Citrus Sinensis ID: 005680

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680---
Protein Sequence
MGLSFMIPSAGKSRTAVSGSYFVHHHMPDYCELFIICGGKLVSLKGENDEGIMEDDQGVKFAKMRERVNFGNLWTKMFSGNGRNPNRLSICSRGPDADSPYSRSTWENCVQEIEIYFQHLASFNLDDASNSEDGDEILQTRAIEPNAAEQIDSNMSVAERTEFMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFCKEKDAIGMVIRSSELSCAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKADGLADKRESEVVTDRCANKEDSNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNKQSSVHS
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHccccccEEEEEEcccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccccccHHHHHHHHHcccccccccccccccEEEEEEEcccEEEEEEccccccHHHHHHHHHHHHcccccccccccccccccccEEEEccccccHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHcccccccccHHHHHHHHHHHHHccccccHHHHHHHHccccHHHHcccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccccccccHHccccccccccccccccccccccHHcccccccccccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccEEEccccccccccccEEEEEEccccccEEEEEEEccEEEEEcccccccccccccccEEEcccccccHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccEcccccccccccccccccccHHHHccHHHcccHHHHHHHHcccccHHccHHHHHHHHHHccccccHHcccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEcHHHHHHHHccccHHccEcccccccEEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHHcHcHHHEEEccccccEEEEEEcccccHHHHHcccccHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccEEEccccHcHEEcccccccHHcHHcHHHccccccHHHHHHHHHHHHHHHccccccccHcccccHHcccHHHHccHcHccccHHHHHHHHHHHHHHHHccHcccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHccccEccccccHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mglsfmipsagksrtavsgsyfvhhhmpdycELFIICGgklvslkgendegimeddqgVKFAKMRERVNFGNLWTKmfsgngrnpnrlsicsrgpdadspysrstwENCVQEIEIYFQHLAsfnlddasnsedgdeilqtraiepnaaeqidsnmsVAERTEFMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFCKEKDAIGMVIRSSELSCAFREYAAEDIRLATEDFSERFRLKCagdwtnvyrGRLNHASVAIKTLnnglseedFQAKVSFLTAVRHPHLVAVMGCCSELKCIVfeympngnlrdkLFTSQRNYKNCSRARALRWLDRIHIAHEVCLglsflhsteprpivhgsltpssillDRNLVAKISglglnicdqlnvrSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVldgnagiwpLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKADgladkresevvtdrcankedsndvpsvficpifqevmktphvaadgFSYELEAMEEWlgmghdtspmtnlrlkhkyltpnhTLRSLIQEWHNKQSSVHS
Flexible Loop (DISEMBL)
mglsfmipsagksrTAVSGSYFVHHHMPDYCELFIICGGKLVSLKGENDEGIMEDDQGVKFAKMRERVNFGNLWTKMFSGNGRNPNRLSICSRGPDADSPYSRSTWENCVQEIEIYFQHLASFNLDDASNSEDGDEILQTraiepnaaeqidsnmsvaERTEFMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIqrdldslkeqscEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRiefckekdaigmviRSSELSCAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDevrkkadgladkresevvtdrcankedsndvpsVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEwhnkqssvhs
Low Complexity Region (SEG)
MGLSFMIPSAGKSRTAVSGSYFVHHHMPDYCELFIICGGKLVSLKGENDEGIMEDDQGVKFAKMRERVNFGNLWTKMFSGNGRNPNRLSICSRGPDADSPYSRSTWENCVQEIEIYFQHLASFNLDDASNSEDGDEILQTRAIEPNAAEQIDSNMSVAERTEFMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRlsslielqselsNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFCKEKDAIGMVIRSSELSCAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKADGLADKRESEVVTDRCANKEDSNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNKQSSVHS
Disordered region (IsUnstruct)
****************VSGSYFVHHHMPDYCELFIICGGKLVSLKGENDEGIMEDDQGVKFAKMRERVNFGNLWTKMFSG***********************STWENCVQEIEIYFQHLASFNL***************************************************************CAKAKWAICLCNSR**********************************************************************LEKAVIARAEIVKDIEELRRQRDVLHRRIEFCKEKDAIGMVIRSSELSCAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVM**********************************VPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEW*********
Disordered Region (DISOPRED)
**********************VHHHMPDYCELFIICGGKLVSL**************************************************************************************************************************************************************************************************************************************KAVIARAEIVKDIEE**********************************REYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIK**N******DFQ*KVSFLTAVRHPHLVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNY**CSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSA****NRD**IAGVMKELDE********************************************TPHVAADGFSYELEAMEEWLGM*H*TSPMTNLRLKHKYLTPNHTLRSLIQ***********
Disordered Region (DISEMBL)
MGLSFMIPSAGKSRTAVSGSYFVHHHMPDYCELFIICGGKLVSLKGENDEGIMEDDQGVKFAKMRERVNFGNLWTKMFSGNGRNPNRLSICSRG*********STWENCVQEIEIYFQHLASFNLDDASNSEDGDEILQTRAIEPNAAEQIDSNMSVAERTEFMKSKINEAREMIRLKKK********CAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFCKEKDAIGMVIRSSELSCAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDE*******************RCANKEDSNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEW*********
Disordered Region (DISPRO)
***********KSRTAVSGSYFVHHHMPDYCELFIICGGKLVSLKGENDEGIMEDDQGVKFAKMRERVNFGNLWTKMFSG*********************SRSTWENCVQEIEIYFQHLASFNLDD*******D*ILQTR***PNAAEQIDSNMSVAERTEFMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRD************************SCAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRN****SRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDE*******************************SVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNK******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLSFMIPSAGKSRTAVSGSYFVHHHMPDYCELFIICGGKLVSLKGENDEGIMEDDQGVKFAKMRERVNFGNLWTKMFSGNGRNPNRLSICSRGPDADSPYSRSTWENCVQEIEIYFQHLASFNLDDASNSEDGDEILQTRAIEPNAAEQIDSNMSVAERTEFMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDxxxxxxxxxxxxxxxxxxxxxLQLSTMAKGHAEAQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDAIGMVIRSSELSCAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRxxxxxxxxxxxxxxxxxxxxxRESEVVTDRCANKEDSNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNKQSSVHS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	683	2.2.26 [Sep-21-2011]
Q9FGD7	765	Putative U-box domain-con	yes	no	0.941	0.840	0.510	0.0
Q8GUH1	834	U-box domain-containing p	no	no	0.903	0.739	0.295	3e-69
Q94A51	805	U-box domain-containing p	no	no	0.490	0.416	0.398	2e-67
Q9SW11	835	U-box domain-containing p	no	no	0.528	0.432	0.338	2e-59
Q9FKG5	796	U-box domain-containing p	no	no	0.493	0.423	0.349	5e-59
Q9FKG6	845	U-box domain-containing p	no	no	0.651	0.526	0.320	7e-59
Q8S8S7	801	U-box domain-containing p	no	no	0.609	0.519	0.321	1e-58
Q9LU47	819	Putative U-box domain-con	no	no	0.551	0.460	0.325	7e-58
Q0DR28	518	U-box domain-containing p	no	no	0.486	0.640	0.340	2e-50
P0C6E7	568	Putative U-box domain-con	no	no	0.103	0.125	0.661	2e-23

>sp|Q9FGD7|PUB50_ARATH Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana GN=PUB50 PE=3 SV=1

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/672 (51%), Positives = 465/672 (69%), Gaps = 29/672 (4%)

Query: 11  GKSRTAVSGSYFVHHHMPDYCELFIICGGKLVSLKGENDEGIMEDDQGVKFAKMRERVNF 70
           GKS++A+SGS++V+ + P++CE +IICGGK+VSLK         +D     + +R  +  
Sbjct: 117 GKSKSAISGSFYVYQNKPEFCEFYIICGGKMVSLK---------NDVNNNNSNIRSWIG- 166

Query: 71  GNLWTKMFSGNGRNPNRLSICSRGPDADSPYSRSTWENCVQEIEIYFQHLASFNLDDASN 130
                KMF   GRN +R    S G + D   S S+W+  +QEIE YFQ L S NL   + 
Sbjct: 167 -----KMFHDPGRNLDR----SSGNNDDPTASGSSWDKNLQEIENYFQQLLSLNL---AE 214

Query: 131 SEDGDEILQTRAIEPNAAEQIDSNMSVAERTEFMKSKINEAREMIRLKKKETKDDAERCA 190
            E  + + + +  + + A  +  +M VAE+ E+++ K+NEA+ MI  K +E K +AER  
Sbjct: 215 EETENVVEEEQEDDDDVALNVLQHMDVAEKLEYVRRKVNEAKLMIDEKSREVKVNAERSN 274

Query: 191 KAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIE 250
           +A+WAI LCNSR  + E+  KE+   R ++Q  LDS KE   E    VE+ K +L SL E
Sbjct: 275 RAEWAISLCNSRIGEFEAWIKEESERREKLQATLDSDKECIEEAKNYVEKGKTKLHSLAE 334

Query: 251 LQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFCKEKDAI 310
           LQ  LS+K++    AK  AE +LE+ V+ R E++ +IE+LR QRDV +RRIEFCKE++ I
Sbjct: 335 LQEVLSSKVKTMMEAKSQAEVELERVVLQRGEMITEIEKLRSQRDVFNRRIEFCKEREVI 394

Query: 311 GMVIRSSELSCAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNN 370
           G V +  E+ C +REY AEDIRLATE +S+R RLK  G+WTNVYRGR+ H +VA+K + +
Sbjct: 395 GSVSKE-EVKCGYREYVAEDIRLATETYSDRLRLKSGGNWTNVYRGRIKHTTVAVKVIGD 453

Query: 371 GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSEL-KCIVFEYMPNGNLRDKLFTSQRNYKNC 429
            LS+E F AKV  L  +RHP+LVA+ G CS+  KC++FEYM NGNLRD LFTSQR  +  
Sbjct: 454 SLSDEAFGAKVKLLNEIRHPNLVAIAGFCSQRPKCLLFEYMHNGNLRDNLFTSQRKSR-- 511

Query: 430 SRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNI 489
            R++ L+W DRI IAH+VC GL FLHS +P+PIVHG LTPS ILLDRNLV KI+G GL +
Sbjct: 512 -RSKILKWHDRIRIAHQVCSGLGFLHSVKPKPIVHGRLTPSKILLDRNLVPKITGFGLIM 570

Query: 490 -CDQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE 548
             DQ + + D+ AFG LLLHLLTGRNW GL+ KAM+++QT++++ LD  AG WPL+LA+E
Sbjct: 571 HSDQSDTKPDVMAFGVLLLHLLTGRNWHGLL-KAMSMNQTSILRDLDQTAGKWPLELAKE 629

Query: 549 LAGIALKCLSADQDANRDLRIAGVMKELDEVRKKADGLADKRESEVVTDRCANKEDSNDV 608
              +A+KC S ++  N D     +M+EL ++R+KAD    K   E  T+   ++ D ND+
Sbjct: 630 FGALAVKCSSVNRGGNMDFSTKEIMEELGKIREKADEFKTKGGYEEATNSNMDEGDPNDI 689

Query: 609 PSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLR 668
           PSVF+CPI QEVMK PHVAADGFSYELEA++EWL MGHDTSPMTNLRL ++ LTPNHTLR
Sbjct: 690 PSVFMCPILQEVMKNPHVAADGFSYELEAIQEWLSMGHDTSPMTNLRLDYQMLTPNHTLR 749

Query: 669 SLIQEWHNKQSS 680
           SLIQ+WH+K+++
Sbjct: 750 SLIQDWHSKRAA 761

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q8GUH1|PUB33_ARATH U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2

 Score =  263 bits (672), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 207/700 (29%), Positives = 324/700 (46%), Gaps = 83/700 (11%)

Query: 12  KSRTAVSGSYFVHHHMPDYCELFIICGGKLVSLKGENDEGIMEDDQGVKFAKMRERVNFG 71
           KSR A+    FV    P  C+++  C G L+  +    E  M+D +  ++A  R  ++  
Sbjct: 176 KSRKAI----FVRREAPTLCQIWFTCKGYLIHTR----EATMDDTES-EYASPRPSISAS 226

Query: 72  NLWTKMFSGNGRNPNRLSICSRGPDADSPYSRSTWENCVQEIEIYFQHLASFNLDDASNS 131
           +L     +    + +     SR    DS     +  +  ++         S N D+    
Sbjct: 227 DLLQTFSTPESEHQH----ISRVQSTDSVQQLVSNGSSTEQSGRVSD--GSLNTDEEERE 280

Query: 132 EDGDEILQTRAI-------EPNAAEQIDSNMSVAERTEFMKSKINEAREMIRLKKKETKD 184
            DG E+  +  +         +  + +D + +V         KI +A       K+E   
Sbjct: 281 SDGSEVTGSATVMSSGHSSPSSFPDGVDDSFNV---------KIRKATSEAHSSKQEAFA 331

Query: 185 DAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNR 244
           +  R  KA+        RA Q ES   E++  R + +  +   KE+   +  + E     
Sbjct: 332 ETLRRQKAEKNALDAIRRAKQSESAYSEELKRRKDTEIAVAKEKERFITIKNEQEVIMEE 391

Query: 245 LSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFC 304
           L S +  ++ L +++  S         +L+ AV    ++  + EEL+ +RD   R  E  
Sbjct: 392 LQSAMAQKAMLESQIAKSDGTMEKLNQKLDIAVKLLQKLRDEREELQTERDRALREAEEL 451

Query: 305 KEKDAIGMVIRSSELSCAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVA 364
           +       +    +L   F +++  +I  AT  F    ++   G + ++Y G L H  VA
Sbjct: 452 RSHAETSTL----QLPQYFTDFSFSEIEEATNHFDSTLKIG-EGGYGSIYVGLLRHTQVA 506

Query: 365 IKTLNNGLSEE--DFQAKVSFLTAVRHPHLVAVMGCCSELKCIVFEYMPNGNLRDKLFTS 422
           IK LN   S+   ++Q +V  L+ +RHP+++ ++G C E   +V+EY+P G+L D+L T 
Sbjct: 507 IKMLNPNSSQGPVEYQQEVDVLSKMRHPNIITLIGACPEGWSLVYEYLPGGSLEDRL-TC 565

Query: 423 QRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKI 482
           + N      +  L W +R+ IA E+C  L FLHS +   +VHG L P++ILLD NLV+K+
Sbjct: 566 KDN------SPPLSWQNRVRIATEICAALVFLHSNKAHSLVHGDLKPANILLDSNLVSKL 619

Query: 483 SGLGL---------------------------NICDQLNVRSDIRAFGTLLLHLLTGRNW 515
           S  G                            +   +L  +SD+ +FG +LL LLTGR  
Sbjct: 620 SDFGTCSLLHPNGSKSVRTDVTGTVAYLDPEASSSGELTPKSDVYSFGIILLRLLTGRPA 679

Query: 516 AGLV-EKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK 574
             +  E   ALD  TL  +LD  AG WP   AE+LA +AL+C     +   DL    V +
Sbjct: 680 LRISNEVKYALDNGTLNDLLDPLAGDWPFVQAEQLARLALRCCETVSENRPDLGTE-VWR 738

Query: 575 ELDEVRKKADGLADKRESEVVTDRCANKEDSNDVPSVFICPIFQEVMKTPHVAADGFSYE 634
            L+ +R  + G +              + +    P  FICPIFQEVM+ PHVAADGF+YE
Sbjct: 739 VLEPMRASSGGSSSFH---------LGRNEHRIAPPYFICPIFQEVMQDPHVAADGFTYE 789

Query: 635 LEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEW 674
            EA+  WL   HDTSPMTN++L H  L  NH LRS IQEW
Sbjct: 790 AEAIRAWLDSEHDTSPMTNVKLSHTSLIANHALRSAIQEW 829

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q94A51|PUB32_ARATH U-box domain-containing protein 32 OS=Arabidopsis thaliana GN=PUB32 PE=2 SV=1

 Score =  257 bits (657), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 150/376 (39%), Positives = 216/376 (57%), Gaps = 41/376 (10%)

Query: 325 EYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNN--GLSEEDFQAKVS 382
           +Y+  +I  AT +F   ++L   G + +VY+G L H  VA+K L +   L+  +F+ +V 
Sbjct: 447 DYSFMEINEATNEFDPSWKLG-EGKYGSVYKGNLQHLQVAVKMLPSYGSLNHFEFERRVE 505

Query: 383 FLTAVRHPHLVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIH 442
            L+ VRHP+LV +MG C E + ++++Y+PNG+L D  F+S+ N        AL W  RI 
Sbjct: 506 ILSRVRHPNLVTLMGACPESRSLIYQYIPNGSLED-CFSSENN------VPALSWESRIR 558

Query: 443 IAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN-------------- 488
           IA E+C  L FLHS  P  I+HG+L PS ILLD NLV KI+  G++              
Sbjct: 559 IASEICSALLFLHSNIP-CIIHGNLKPSKILLDSNLVTKINDYGISQLIPIDGLDKSDPH 617

Query: 489 ------ICDQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAM-ALDQTTLMQVLDGNAGIW 541
                 +  ++ + SDI AFG +LL LLT R  +G++     AL+   +  VLD +AG W
Sbjct: 618 VDPHYFVSREMTLESDIYAFGIILLQLLTRRPVSGILRDVKCALENDNISAVLDNSAGDW 677

Query: 542 PLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKADGLADKRESEVVTDRCAN 601
           P+   ++LA +A++C   +     DL  A V++ +D  R KA  +         T   AN
Sbjct: 678 PVARGKKLANVAIRCCKKNPMNRPDL--AVVLRFID--RMKAPEVPSSE-----TSSYAN 728

Query: 602 KEDSNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYL 661
           +      PS ++CPIFQEVMK P +AADGF+YE EA+ EWL  GHDTSPMTNL+++   L
Sbjct: 729 QNVPRRPPSHYLCPIFQEVMKDPLIAADGFTYEAEAIREWLANGHDTSPMTNLKMEDCNL 788

Query: 662 TPNHTLRSLIQEWHNK 677
            PNH L   IQ+W N+
Sbjct: 789 IPNHALHLAIQDWQNQ 804

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SW11|PUB35_ARATH U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2

 Score =  230 bits (587), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 145/428 (33%), Positives = 222/428 (51%), Gaps = 67/428 (15%)

Query: 289 ELRRQRDVLHRRIEFCKEKDAIGMVIRSSELSCAFREYAAEDIRLATEDFSERFRLKCAG 348
           E+ ++R+   +     KEK+ +   + S +L   ++ +A E+I  AT  FSE  ++   G
Sbjct: 433 EIAQRREAERKSARDTKEKEKLEGTLGSPQLQ--YQHFAWEEIMAATSSFSEELKIGM-G 489

Query: 349 DWTNVYRGRLNHASVAIKTLN---NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELKCI 405
            +  VY+  L+H +  +K L    N LS++ FQ ++  L+ +RHPHLV ++G C E   +
Sbjct: 490 AYGAVYKCNLHHTTAVVKVLQSAENQLSKQ-FQQELEILSKIRHPHLVLLLGACPEQGAL 548

Query: 406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHG 465
           V+EYM NG+L D+LF         + +  L W +R  IA EV   L FLH ++P+PI+H 
Sbjct: 549 VYEYMENGSLEDRLF-------QVNNSPPLPWFERFRIAWEVAAALVFLHKSKPKPIIHR 601

Query: 466 SLTPSSILLDRNLVAKISGLGLNICDQ--------------------------------L 493
            L P++ILLD N V+K+  +GL+   Q                                +
Sbjct: 602 DLKPANILLDHNFVSKVGDVGLSTMVQVDPLSTKFTIYKQTSPVGTLCYIDPEYQRTGRI 661

Query: 494 NVRSDIRAFGTLLLHLLTGRNWAGL---VEKAMALDQTTLMQVLDGNAGIWPLDLAEELA 550
           + +SDI +FG +LL LLT +    L   VE AM  +    +++LD  AG WP++   ELA
Sbjct: 662 SSKSDIYSFGMILLQLLTAKPAIALTHFVESAMDSNDE-FLKILDQKAGNWPIEETRELA 720

Query: 551 GIALKCLSADQDANRDLR--IAGVMKELDEVRKKADGLADKRESEVVTDRCANKEDSNDV 608
            +AL C         DL+  I   ++ L +V +KA              R +    S   
Sbjct: 721 ALALCCTELRGKDRPDLKDQILPALENLKKVAEKA--------------RNSFSGVSTQP 766

Query: 609 PSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLR 668
           P+ FICP+ ++VM  P VAADG++Y+  A+EEWL   H+TSPMT+  L  K L PN+TL 
Sbjct: 767 PTHFICPLLKDVMNEPCVAADGYTYDRHAIEEWLK-EHNTSPMTDSPLHSKNLLPNYTLY 825

Query: 669 SLIQEWHN 676
           + I EW +
Sbjct: 826 TAIMEWRS 833

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9FKG5|PUB51_ARATH U-box domain-containing protein 51 OS=Arabidopsis thaliana GN=PUB51 PE=2 SV=2

 Score =  229 bits (584), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 139/398 (34%), Positives = 208/398 (52%), Gaps = 61/398 (15%)

Query: 323 FREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSE--EDFQAK 380
           + ++  E+I  AT  FS+  ++   G + +VYR  L+H +VA+K L++  S   + F  +
Sbjct: 414 YMKFEWEEIVEATSSFSDELKIGVGG-YGSVYRCNLHHTTVAVKVLHSDKSSLTKQFHQE 472

Query: 381 VSFLTAVRHPHLVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDR 440
           +  L+ +RHPHL+ ++G C E   +V+EYM NG+L ++L   + N  +  +   LRW +R
Sbjct: 473 LEILSKIRHPHLLLLLGACPERGSLVYEYMHNGSLEERLMKRRPNV-DTPQPPPLRWFER 531

Query: 441 IHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLN------ 494
             IA E+   L FLH+ EPRPIVH  L P++ILLDRN V+KI  +GL+    L+      
Sbjct: 532 FRIAWEIASALYFLHTNEPRPIVHRDLKPANILLDRNNVSKIGDVGLSKMVNLDPSHAST 591

Query: 495 -------------------------VRSDIRAFGTLLLHLLTGRNWAGL---VEKAMALD 526
                                      SDI AFG +LL L+T R+  GL   +EKA+   
Sbjct: 592 VFNETGPVGTFFYIDPEYQRTGVVTPESDIYAFGIILLQLVTARSAMGLAHSIEKALRDQ 651

Query: 527 QTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDL--RIAGVMKELDEVRKK-- 582
                ++LD  AG WP+  A+E+  I L+C    +    DL   I  V++ L EV     
Sbjct: 652 TGKFTEILDKTAGDWPVKEAKEMVMIGLRCAEMRKRDRPDLGKEILPVLERLKEVASIAR 711

Query: 583 ---ADGLADKRESEVVTDRCANKEDSNDVPSVFICPIFQEVMKTPHVAADGFSYELEAME 639
              AD L D                 ++ P+ F CPI ++VM+ P VA+DG++YE  A++
Sbjct: 712 NMFADNLIDHH---------------HNAPTHFYCPITKDVMENPCVASDGYTYEKRAIK 756

Query: 640 EWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNK 677
           EWL   H  SPMT+L      L PNH+L S I+EW ++
Sbjct: 757 EWLQKNH-KSPMTDLPFPSDSLLPNHSLLSAIKEWRSQ 793

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9FKG6|PUB52_ARATH U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52 PE=2 SV=1

 Score =  229 bits (583), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 168/524 (32%), Positives = 264/524 (50%), Gaps = 79/524 (15%)

Query: 206 LESLTKEDVASRMEIQR---DLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKL--- 259
           + S+T   V    EI++   +L  ++E       +   +  +L+ L + + E S KL   
Sbjct: 349 VHSITDNQVNLNFEIEKLRAELKHVQEMYAMAQTETVGASKKLTELNQRRFEESEKLVEL 408

Query: 260 -QLSTMAKGHA--EAQLEKAVIARAEIVKDIEELRRQRDVLHRR-IEFCKEKDAIGM-VI 314
            +   +AK  A  E Q  +  +  AE VK++      ++ LHRR  EF  E+DA     +
Sbjct: 409 KEKEEVAKDTASKEKQRYEEAMKEAEKVKEL----MMKEALHRREAEFKAERDAREKDKL 464

Query: 315 RSSELS--CAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGL 372
           ++S +S    ++ Y  E+I  AT DF+E  ++   G + +VY+  L+H + A+K L+ G 
Sbjct: 465 QASLVSPGVQYQHYTWEEIAAATSDFAENLKIGI-GAYGSVYKCNLHHTTGAVKVLHAGE 523

Query: 373 SE--EDFQAKVSFLTAVRHPHLVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCS 430
           ++  + F  ++  L+ +RHPHLV ++G C E  C+V+EYM NG+L D+L          +
Sbjct: 524 TQLSKQFDQELEILSKIRHPHLVLLLGACPERGCLVYEYMDNGSLDDRLML-------VN 576

Query: 431 RARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN-I 489
               + W +R  IA EV   L FLH ++PRPI+H  L P +ILLD N V+K+  +GL+ +
Sbjct: 577 DTPPIPWFERFRIALEVASALVFLHKSKPRPIIHRDLKPGNILLDHNFVSKLGDVGLSTM 636

Query: 490 CDQLNV------------------------------RSDIRAFGTLLLHLLTGRNWAG-- 517
            +Q +V                              +SD+ + G ++L L+T +      
Sbjct: 637 VNQDDVSSRTIFKQTSPVGTLCYIDPEYQRTGIISPKSDVYSLGVVILQLITAKPAIAIT 696

Query: 518 -LVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLR--IAGVMK 574
            +VE+A+  D    M +LD  AG WP+    ELA + L C    +    DL+  I   ++
Sbjct: 697 HMVEEAIG-DDAEFMAILDKKAGSWPISDTRELAALGLCCTEMRRRDRPDLKDQIIPALE 755

Query: 575 ELDEVRKKADGLADKRESEVVTDRCANKEDSNDVPSVFICPIFQEVMKTPHVAADGFSYE 634
            L +V  KA  L  +  S                PS FICP+ + VM  P VAADG++Y+
Sbjct: 756 RLRKVADKAQNLLSRTPS--------------GPPSHFICPLLKGVMNEPCVAADGYTYD 801

Query: 635 LEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNKQ 678
            EA+EEWL    DTSP+TNL L +K L  N+TL S I EW + +
Sbjct: 802 REAIEEWLRQ-KDTSPVTNLPLPNKNLIANYTLYSAIMEWKSNK 844

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q8S8S7|PUB34_ARATH U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=3 SV=1

 Score =  228 bits (582), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 160/497 (32%), Positives = 252/497 (50%), Gaps = 81/497 (16%)

Query: 229 EQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIE 288
           +Q+CE   ++  ++N++  L    +E  N+ +    A    E Q   A + +   +K ++
Sbjct: 330 KQACE---ELFSTQNKVKML---STEYLNESKRVNNAVEKEELQRNTAALEKERYMKAVK 383

Query: 289 ELRRQRDVLHRRIEFCK----EKDAIGMVIRSSEL-------SCAFREYAAEDIRLATED 337
           E+   + +L R  EFC+    E +A+   +   ++          +R+Y  E+I  ATE 
Sbjct: 384 EVETAKALLAR--EFCQRQIAEVNALRTYLEKKKVIDQLLGTDHRYRKYTIEEIVTATEG 441

Query: 338 FSERFRLKCAGDWTNVYRGRLNHASVAIKT--LNNGLSEEDFQAKVSFLTAVRHPHLVAV 395
           FS   ++   G +  VY+  L+    A+K   L+    +++F  +V  L+ +RHPH+V +
Sbjct: 442 FSPE-KVIGEGGYGKVYQCSLDSTPAAVKVVRLDTPEKKQEFLKEVEVLSQLRHPHVVLL 500

Query: 396 MGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLH 455
           +G C E  C+V+EY+ NG+L + +F    + KN      L W  R  +  EV  GL+FLH
Sbjct: 501 LGACPENGCLVYEYLENGSLEEYIF----HRKN---KPPLPWFIRFRVIFEVACGLAFLH 553

Query: 456 STEPRPIVHGSLTPSSILLDRNLVAKISGLGL----------NI---------------- 489
           S++P PIVH  L P +ILL+RN V+KI+ +GL          N+                
Sbjct: 554 SSKPEPIVHRDLKPGNILLNRNYVSKIADVGLAKLVTDVAPDNVTMYRNSVLAGTLHYID 613

Query: 490 -----CDQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKA-MALDQTTLMQVLDGNAGIWPL 543
                   +  +SD+ AFG ++L LLT RN +G+V     A+ + TL ++LD +   WPL
Sbjct: 614 PEYHRTGTIRPKSDLYAFGIIILQLLTARNPSGIVPAVENAVKKGTLTEMLDKSVTDWPL 673

Query: 544 DLAEELAGIALKCLSADQDANRDLR--IAGVMKELDEVRKKADGLADKRESEVVTDRCAN 601
              EELA I LKC         DL+  +  V+K L E                  +    
Sbjct: 674 AETEELARIGLKCAEFRCRDRPDLKSEVIPVLKRLVE----------------TANSKVK 717

Query: 602 KEDSN-DVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKY 660
           KE SN   PS + CPI +E+M+ P +AADGF+YE +A+  WL   H+ SP+T  +L H  
Sbjct: 718 KEGSNLRAPSHYFCPILREIMEEPEIAADGFTYERKAILAWLE-KHNISPVTRQKLDHFK 776

Query: 661 LTPNHTLRSLIQEWHNK 677
           LTPNHTLRS I++W ++
Sbjct: 777 LTPNHTLRSAIRDWKSR 793

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LU47|PUB53_ARATH Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana GN=PUB53 PE=3 SV=1

 Score =  226 bits (575), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 145/446 (32%), Positives = 226/446 (50%), Gaps = 69/446 (15%)

Query: 278 IARAEIVKDIEELRRQRDVLHRR-IEFCKEKDAIGMVIRSSELSCA----FREYAAEDIR 332
           IA+ E  K  ++ R +R+   RR  E     +A            A    ++E+  E+I 
Sbjct: 395 IAKKETEKFEQKRREEREAAQRREAEMKATHEAKEKEKLEESSLVAPKLQYQEFTWEEII 454

Query: 333 LATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSE--EDFQAKVSFLTAVRHP 390
            AT  FSE  ++   G + +VY+  L+H   A+K L++  S   + F  ++  L+ +RHP
Sbjct: 455 NATSSFSEDLKIGM-GAYGDVYKCNLHHTIAAVKVLHSAESSLSKQFDQELEILSKIRHP 513

Query: 391 HLVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLG 450
           HLV ++G C +   +V+EYM NG+L D+LF         + ++ + W  R+ IA EV   
Sbjct: 514 HLVLLLGACPDHGALVYEYMENGSLEDRLF-------QVNDSQPIPWFVRLRIAWEVASA 566

Query: 451 LSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQ------------------ 492
           L FLH ++P PI+H  L P++ILL+ N V+K+  +GL+   Q                  
Sbjct: 567 LVFLHKSKPTPIIHRDLKPANILLNHNFVSKVGDVGLSTMIQAADPLSTKFTMYKQTSPV 626

Query: 493 ---------------LNVRSDIRAFGTLLLHLLTGRNWAGL---VEKAMALDQ-TTLMQV 533
                          ++ +SD+ AFG ++L LLTG+    L   VE AM  +    L+Q+
Sbjct: 627 GTLCYIDPEYQRTGRISPKSDVYAFGMIILQLLTGQQAMALTYTVETAMENNNDDELIQI 686

Query: 534 LDGNAGIWPLDLAEELAGIALKCLSADQDANRDL--RIAGVMKELDEVRKKADGLADKRE 591
           LD  AG WP++   +LA +AL+C         DL  +I  V++ L +V  KA        
Sbjct: 687 LDEKAGNWPIEETRQLAALALQCTELRSKDRPDLEDQILPVLESLKKVADKA-------- 738

Query: 592 SEVVTDRCANKEDSNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPM 651
                 R +     +  PS F CP+ ++VMK P +AADG++Y+  A+EEW+   H TSP+
Sbjct: 739 ------RNSLSAAPSQPPSHFFCPLLKDVMKEPCIAADGYTYDRRAIEEWME-NHRTSPV 791

Query: 652 TNLRLKHKYLTPNHTLRSLIQEWHNK 677
           TN  L++  L PNHTL + I EW N+
Sbjct: 792 TNSPLQNVNLLPNHTLYAAIVEWRNR 817

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q0DR28|PUB57_ORYSJ U-box domain-containing protein 57 OS=Oryza sativa subsp. japonica GN=PUB57 PE=2 SV=1

 Score =  200 bits (509), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 130/382 (34%), Positives = 193/382 (50%), Gaps = 50/382 (13%)

Query: 325 EYAAEDIRLATEDFSERFRLKCAGD--WTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVS 382
           +++ +D+  ATE F      +  GD  + + Y+G +++  V IK  +   S++ FQ +VS
Sbjct: 146 DFSRKDMEQATEHFKNA---REVGDTEYGHTYKGMIHNMKVLIKLSS---SQKLFQQEVS 199

Query: 383 FLTAVRHPHLVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIH 442
            L   RHP+++  +G CSE+  +V+E++PNGNL D++  +       + +  L W +R  
Sbjct: 200 ILRQWRHPNIITFIGVCSEVSALVYEWLPNGNLEDRIICT-------NNSAPLSWYNRTQ 252

Query: 443 IAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL--------------- 487
           I  E+C  L FLHS +   +VHG L P +IL+D N  +KI   G+               
Sbjct: 253 IIGEICCALLFLHSNKSTALVHGDLRPCNILIDANYRSKICNFGMSNLFLQLGTFPPNLT 312

Query: 488 ----------NICDQLNVRSDIRAFGTLLLHLLTGRNWAGLVEK-AMALDQTTLMQVLDG 536
                     N   +L   SD+ + G ++L LLTG     L EK A AL   +L  ++D 
Sbjct: 313 ARLPYMDPEFNTTGELTTLSDVYSLGVIILRLLTGMPPLTLSEKVAEALGSDSLHLLIDK 372

Query: 537 NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKADGLADKRESEVVT 596
           +AG WP   A++LA I L C    +    DL        L+EV    + L  K  +    
Sbjct: 373 SAGDWPYIEAKQLALIGLSCTGMTRKKRPDL--------LNEVWIVIEPLTRKPPAATWP 424

Query: 597 DRCANKEDSNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRL 656
              +   DS+ VP+ FICPI  E+MK P VA+DGF+YE EA+  W   G   SPMTNL L
Sbjct: 425 YLQSASGDSS-VPAAFICPISMEIMKDPQVASDGFTYEAEAIRCWFDRGISRSPMTNLAL 483

Query: 657 KHKYLTPNHTLRSLIQEWHNKQ 678
            +  L PN  LRS I  +  +Q
Sbjct: 484 PNLNLVPNRVLRSFIHGYLQQQ 505

Possesses E3 ubiquitin-protein ligase in vitro. May be involved in cell death signaling.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P0C6E7|PUB55_ARATH Putative U-box domain-containing protein 55 OS=Arabidopsis thaliana GN=PUB55 PE=3 SV=1

 Score =  111 bits (278), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 47/71 (66%), Positives = 54/71 (76%)

Query: 609 PSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLR 668
           PS FICPI QEVM+ P VAADGF+YE E++ EWL  GH+TSPMTNL+L H  L PNH LR
Sbjct: 498 PSYFICPISQEVMREPRVAADGFTYEAESLREWLDNGHETSPMTNLKLAHNNLVPNHALR 557

Query: 669 SLIQEWHNKQS 679
           S IQEW  + S
Sbjct: 558 SAIQEWLQRNS 568

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	683
255586647	724	ATP binding protein, putative [Ricinus c	0.944	0.890	0.572	0.0
356497691	803	PREDICTED: putative U-box domain-contain	0.982	0.835	0.558	0.0
356529687	802	PREDICTED: putative U-box domain-contain	0.982	0.836	0.546	0.0
357485505	808	U-box domain-containing protein [Medicag	0.978	0.826	0.539	0.0
224094967	718	predicted protein [Populus trichocarpa]	0.915	0.870	0.556	0.0
297797581	767	kinase family protein [Arabidopsis lyrat	0.944	0.840	0.515	0.0
75333799	765	RecName: Full=Putative U-box domain-cont	0.941	0.840	0.510	0.0
449451595	806	PREDICTED: putative U-box domain-contain	0.983	0.833	0.493	0.0
240256481	791	U-box domain-containing protein kinase f	0.947	0.817	0.502	0.0
449499876	775	PREDICTED: putative U-box domain-contain	0.938	0.827	0.460	1e-165

>gi|255586647|ref|XP_002533954.1| ATP binding protein, putative [Ricinus communis] gi|223526067|gb|EEF28423.1| ATP binding protein, putative [Ricinus communis]

 Score =  756 bits (1953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/674 (57%), Positives = 506/674 (75%), Gaps = 29/674 (4%)

Query: 12  KSRTAVSGSYFVHHHMPDYCELFIICGGKLVSLKGENDEGIMEDDQGVKFAKMRERVNFG 71
           +S+ A+SGS+++H H P +CE FI+CGGKLV L+GEN++ IMED+QG+   +   + N  
Sbjct: 70  RSKNAISGSFYIHQHKPSFCEFFIVCGGKLVILRGENEDVIMEDNQGLTVER---KGNLK 126

Query: 72  NLWTKMFSGNGRNPNRLSICSRGPDADSPYSRSTWENCVQEIEIYFQHLASFNLDDASNS 131
           +   KMF+ +     R +  S+    DS   ++ WENC  EI+ Y++HL S NLD+ +  
Sbjct: 127 SWLGKMFNEHYSLARRSTASSKS--LDSLNEQNQWENCTIEIQNYYEHLLSLNLDEENCE 184

Query: 132 EDGDEILQTRAIEPNAAEQIDSNMSVAERTEFMKSKINEAREMIRLKKKETKDDAERCAK 191
           E+        ++E    E  +S MSVA ++E+M+SKI++A+++IRLKK+E K +AER AK
Sbjct: 185 EE-----NDDSLEGGVPETTES-MSVAAKSEYMRSKIDDAQKIIRLKKEEAKANAERSAK 238

Query: 192 AKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIEL 251
           A+WA+CLCN+RA+ LE+  KE+VA+R+EI++ LD  +EQ  E+  D+ E+KNRL SL+ L
Sbjct: 239 AEWAVCLCNTRAEDLEAKIKEEVANRIEIKKALDGEREQIQEMRSDIAENKNRLKSLVVL 298

Query: 252 QSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFCKEKDAIG 311
           QSEL++KLQLST+A+ H EAQLEKAVIARAE+V+DIE+LR QRDVL RR+EFCKEKDAIG
Sbjct: 299 QSELTSKLQLSTLARSHGEAQLEKAVIARAEMVRDIEKLRGQRDVLQRRVEFCKEKDAIG 358

Query: 312 MVIRSSELSCAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLN-- 369
            V + +EL+C +REY+AEDIRLAT+ FSE  R K   DWTNVYRGR+++A+VAIK LN  
Sbjct: 359 TVKKLTELTCGYREYSAEDIRLATDGFSETLRFKSGRDWTNVYRGRIHNAAVAIKMLNPD 418

Query: 370 NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNC 429
           + LS EDF AKV  L  +RHPH++A++G CSE K I+FEYM NG+LR+ LF+SQRN++  
Sbjct: 419 HALSREDFLAKVKLLNNIRHPHVIAIVGFCSEPKSIIFEYMHNGSLREILFSSQRNHRK- 477

Query: 430 SRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNI 489
            R RAL W DRI IA E+C GL +LH   PRPI+HG LT SSILLDR+LVAKISGLGLN 
Sbjct: 478 -RNRALTWHDRIRIAQELCSGLGYLHLANPRPIIHGHLTTSSILLDRHLVAKISGLGLNQ 536

Query: 490 CDQLN--VRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAE 547
           C   N   R DIRAFG LL HLLTG+NWAGLVE+   +D+T L+ VLD  AG WPLDLAE
Sbjct: 537 CYDANNDTRPDIRAFGVLLFHLLTGKNWAGLVEETTKIDRTALVGVLDELAGQWPLDLAE 596

Query: 548 ELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKADGLADK--RESEVVTDRCANKEDS 605
           EL GIA+KC+S +   +RD  +A VM+ LD VRKKA+ +  K  R+++       +KE+S
Sbjct: 597 ELVGIAMKCMSIN---SRDFTLAEVMEGLDTVRKKANEIVAKGGRQAD-------DKENS 646

Query: 606 NDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNH 665
           ++VP +F+CPIFQ+VMK PHVAADGFSYELEA+EEWL  G DTSPMTNLRL+H +LTPNH
Sbjct: 647 SEVPGIFLCPIFQDVMKNPHVAADGFSYELEAIEEWLKTGRDTSPMTNLRLEHTFLTPNH 706

Query: 666 TLRSLIQEWHNKQS 679
           TLR+LIQ+WH K+S
Sbjct: 707 TLRTLIQDWHQKKS 720

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497691|ref|XP_003517693.1| PREDICTED: putative U-box domain-containing protein 50-like [Glycine max]

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/687 (55%), Positives = 498/687 (72%), Gaps = 16/687 (2%)

Query: 1   MGLSFMIPSA-GKSRTAVSGSYFVHHHMPDYCELFIICGGKLVSLKGENDEGIMEDDQGV 59
           MG SFM PS   KS+ A++G + VH   P +CELF+ICGGK V L+G+NDE IMEDDQGV
Sbjct: 126 MGFSFMKPSMYWKSKGAINGLFHVHEQKPSFCELFVICGGKQVFLRGKNDEKIMEDDQGV 185

Query: 60  KFAKMRERVNFGNLWTKMFSGNGRNPNRLSICSRGPDADSPYSRSTWENCVQEIEIYFQH 119
             A+MR+++ F +   K F     +           + +SP +R+ WE  +QEIE Y+Q 
Sbjct: 186 MVARMRDKITFKDWLDKWFKDKTNDSQDRIASLSSSNLESPVNRNQWEFYLQEIENYYQE 245

Query: 120 LASFNLDDASNSEDGDEILQTRAIEPNAAEQIDSNMSVAERTEFMKSKINEAREMIRLKK 179
           L S   ++ S  ++ D+  Q   IEP+  EQ + NMS AE+ E +K+K+NE ++ I+LK+
Sbjct: 246 LLSSKPEEGSCVQENDDS-QIGPIEPHVTEQNNYNMSTAEKIEILKNKLNEGQKTIQLKR 304

Query: 180 KETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVE 239
           KE KD+ ER  KA+WAICLCNSRA++LES  +E+V++R E++++ D+ KEQ+ E+  +VE
Sbjct: 305 KEAKDNIERHTKAEWAICLCNSRAEELESRIREEVSAREELKKESDAEKEQTEEMRTEVE 364

Query: 240 ESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHR 299
           E K RLSSL E+QSELSN+LQ+ T+AK  AE QLEKAV  R E+ ++IEELRRQRDVL+R
Sbjct: 365 ERKRRLSSLTEVQSELSNRLQIWTLAKIRAETQLEKAVGERREMGREIEELRRQRDVLNR 424

Query: 300 RIEFCKEKDAIGMVIRSSELS-CAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRL 358
           RIEFCK+KDAIGM  R +E + CAFREY  E++RLAT++FSER RLK  GDWTNVYRGR 
Sbjct: 425 RIEFCKQKDAIGMAARLAETTFCAFREYTEEELRLATDNFSERLRLKSGGDWTNVYRGRF 484

Query: 359 NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELKCIVFEYMPNGNLRDK 418
           NH++VAIK L + LS + FQ+KV  L  +R PHLVA++G CSE KCIV EYM NG+LRD 
Sbjct: 485 NHSTVAIKMLPS-LSPQHFQSKVRLLGDIRQPHLVAMVGFCSEPKCIVLEYMRNGSLRDM 543

Query: 419 LFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL 478
           LF+ +RN       R LRW DRI IA EVC GL FL+  EPRP +H  LTPS ILLDR+L
Sbjct: 544 LFSRRRN-------RTLRWHDRIRIATEVCSGLGFLNVAEPRPAIHCHLTPSKILLDRHL 596

Query: 479 VAKISGLGLNIC--DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMA--LDQTTLMQVL 534
           +AKI+G GL+ C  +  N+ SD+RA G LL+HLLTGRNWAGLVE+ M   +D+  L  VL
Sbjct: 597 IAKITGFGLHECHDEHCNIESDLRAIGALLMHLLTGRNWAGLVEEVMTVDIDREALGGVL 656

Query: 535 DGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKADGLADK-RESE 593
           D  AG WPLDLA ELAG+A++C+S   + N +L IA V++EL+E+R+K D +  + R   
Sbjct: 657 DEMAGQWPLDLARELAGLAMRCMSIKSEPNLELSIARVLEELNEIRRKGDEIVGRERRKT 716

Query: 594 VVTDRCANKEDSNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTN 653
            +   C N+E S+DVPSVF+CPI QEVMK PHVAADGFSYELEA+E WL  G DTSP+TN
Sbjct: 717 NINGGCINREGSSDVPSVFLCPILQEVMKNPHVAADGFSYELEAIEHWLQSGRDTSPVTN 776

Query: 654 LRLKHKYLTPNHTLRSLIQEWHNKQSS 680
           LRLKH +LTPNHTLRSLI++W   +S+
Sbjct: 777 LRLKHTFLTPNHTLRSLIEDWQTNKST 803

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529687|ref|XP_003533420.1| PREDICTED: putative U-box domain-containing protein 50-like [Glycine max]

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/686 (54%), Positives = 495/686 (72%), Gaps = 15/686 (2%)

Query: 1   MGLSFMIPSA-GKSRTAVSGSYFVHHHMPDYCELFIICGGKLVSLKGENDEGIMEDDQGV 59
           MG SFM PS   KS+ A+SG ++VH H P +CELFIICGGK V L+G+NDE IMEDD+GV
Sbjct: 126 MGFSFMKPSMYWKSKGAISGLFYVHQHKPSFCELFIICGGKQVFLRGKNDEKIMEDDRGV 185

Query: 60  KFAKMRERVNFGNLWTKMFSGNGRNPNRLSICSRGPDADSPYSRSTWENCVQEIEIYFQH 119
             A+MR++V F +   K F+    +    S      + +SP +++ WE  +QEIE Y+Q 
Sbjct: 186 MSARMRDKVTFKDWLDKWFNDKTNDSQDRSTSLSSTNLESPLNQNQWEFYLQEIEKYYQE 245

Query: 120 LASFNLDDASNSEDGDEILQTRAIEPNAAEQIDSNMSVAERTEFMKSKINEAREMIRLKK 179
           L S NL++ +   + D+  Q   IEP+  E  + +MS A++ E +K+K+NEA+++I+LK+
Sbjct: 246 LLSSNLEEGNCVLENDDS-QIGPIEPHVTEHNNYDMSAADKIEILKNKLNEAQKIIQLKR 304

Query: 180 KETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVE 239
           KE KD+ ER  KA+WAICLCNSRA++LES  +E+ ++R E++++ D+ KEQ+ E+  ++E
Sbjct: 305 KEAKDNIERHTKAEWAICLCNSRAEELESRIREEASAREELKKESDAEKEQTVEMKTELE 364

Query: 240 ESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHR 299
           E K  L SL E+QSELSN+LQ+ T+AK  AE QLEKAV  R+E+V++IEELRRQRDV +R
Sbjct: 365 ERKRSLRSLTEVQSELSNRLQIWTLAKTRAETQLEKAVGERSEMVREIEELRRQRDVFNR 424

Query: 300 RIEFCKEKDAIGMVIRSSELS-CAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRL 358
           RIEFCKEKDAIGM    +E++ CAFREY  E++RLAT++FS+R R K  GDWTNVYRGR 
Sbjct: 425 RIEFCKEKDAIGMAASLAEMTCCAFREYTEEELRLATDNFSDRLRFKSGGDWTNVYRGRF 484

Query: 359 NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELKCIVFEYMPNGNLRDK 418
           NH+SVAIK L + LS + FQ+KV  L  +R PHLVA++G CSE KCIV EYM NG+LRD 
Sbjct: 485 NHSSVAIKMLPS-LSHQHFQSKVRLLGDIRQPHLVAMVGFCSEPKCIVLEYMGNGSLRDM 543

Query: 419 LFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL 478
           LF+ +RN       R LRW DRI IA EVC GL FL++ E RP +H  L+ S ILLDRNL
Sbjct: 544 LFSRRRN-------RVLRWHDRIRIATEVCSGLGFLNAAELRPAIHCHLSSSKILLDRNL 596

Query: 479 VAKISGLGLNIC--DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMA--LDQTTLMQVL 534
           VAKI+G GL  C  +Q NV SD++A G LL+HLLTGRNWAGLVE+ M   +D+  L  VL
Sbjct: 597 VAKITGFGLLECHDEQCNVESDLQAIGVLLIHLLTGRNWAGLVEEVMTVDMDRKALGSVL 656

Query: 535 DGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKADGLADKRESEV 594
           D  AG WPLDLA ELA +A++C+S     N +L IA V++EL+E+R+  D + ++   + 
Sbjct: 657 DEMAGQWPLDLARELAALAMRCMSIKAKPNSELSIARVLEELNEIRRNGDEIVEREGPKT 716

Query: 595 VTDRCANKEDSNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNL 654
           +   C ++  S+D+PSVF+CPI QE M  PHVAADGFSYELEA+E WL  G DTSPMTNL
Sbjct: 717 IIGGCIDRAGSSDMPSVFLCPILQEAMTNPHVAADGFSYELEAIEHWLQSGRDTSPMTNL 776

Query: 655 RLKHKYLTPNHTLRSLIQEWHNKQSS 680
           RLKH +LTPNHTLRSLIQ+W   +S+
Sbjct: 777 RLKHTFLTPNHTLRSLIQDWQTNKST 802

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485505|ref|XP_003613040.1| U-box domain-containing protein [Medicago truncatula] gi|355514375|gb|AES95998.1| U-box domain-containing protein [Medicago truncatula]

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/691 (53%), Positives = 498/691 (72%), Gaps = 23/691 (3%)

Query: 1   MGLSFMIPSAGKSRTAVSGSYFVHHHMPDYCELFIICGGKLVSLKGENDEGIMEDDQGVK 60
           MG SFM PS  KS+ A+SG ++VH H P  CELFIICGGK V L+G NDE IMEDD GV 
Sbjct: 126 MGFSFMKPSL-KSKGAISGLFYVHQHKPSLCELFIICGGKQVFLRGNNDEKIMEDDSGVM 184

Query: 61  FAKMRERVNFGNLWTKMFS--GNGRNPNRLSICSRGPDADSPYSRSTWENCVQEIEIYFQ 118
            AKMR++V F +   KMFS   N  + NRLS       + +   ++ WE  +Q+IE Y+Q
Sbjct: 185 VAKMRDKVTFKDWLDKMFSDKTNYYSQNRLS----ASPSSTNLVQNQWEFYLQDIENYYQ 240

Query: 119 HLASFNLDDASNSEDGDEILQTRAIEPNAAEQIDSNMSVAERTEFMKSKINEAREMIRLK 178
            L S NL++ S  ++ D +      EP+  +  +SN S AE+ E +K+K+NEAR+ I LK
Sbjct: 241 ELLSSNLEEGSYVQENDGLHVCPKFEPHVTDLNNSNKSTAEKIEMLKNKLNEARKTIELK 300

Query: 179 KKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDV 238
           +KE K++ ER  KA+WAI LCNSRA+++E   +E+V+++  + ++L   KEQ  E+  ++
Sbjct: 301 RKEAKENIERRTKAEWAISLCNSRAEEIEGRIREEVSTKENLNKELQLEKEQREEMRTEI 360

Query: 239 EESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLH 298
           +E K R++SL+ELQSELSNKLQLSTMA+  AE Q+E+AV  R E+V++IEELR+QRDVL+
Sbjct: 361 KEKKQRMNSLVELQSELSNKLQLSTMARSRAETQVERAVRERTEMVREIEELRKQRDVLN 420

Query: 299 RRIEFCKEKDAIGMVIRSSE--LSCAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRG 356
           RRIEFCK+KDAIGM  R S+   S   REY+ E++RLAT++FSER RLK   DWTNVYRG
Sbjct: 421 RRIEFCKQKDAIGMAARLSDNITSIGMREYSEEELRLATDNFSERLRLKSGRDWTNVYRG 480

Query: 357 RLNHASVAIKTLN--NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELKCIVFEYMPNGN 414
           R NH++VAIK ++  + LS+E+FQ KV FL  +R PH+VA++G CS+ KCI+ EYM NG+
Sbjct: 481 RFNHSTVAIKMMSSFHSLSQEEFQTKVRFLGDIRQPHVVAMVGFCSKPKCIILEYMGNGS 540

Query: 415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL 474
           L+D LF+ +RN       R LRW DRI IA EVC GL+FL+S+  RPIVH  L+P+ +LL
Sbjct: 541 LQDMLFSRRRN-------RGLRWHDRIRIAAEVCSGLAFLNSSSQRPIVHCHLSPAHVLL 593

Query: 475 DRNLVAKISGLGLNICD---QLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAM--ALDQTT 529
           DRNLVAKI+G GL  CD   + NV SD+RA G LL+ LLTGRNWAG V++ M   +D+ T
Sbjct: 594 DRNLVAKITGFGLQECDDDKECNVESDLRALGILLMQLLTGRNWAGPVDEPMTVGMDRET 653

Query: 530 LMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKADGLADK 589
           L+ +LD  AG WPLDLA+EL G+A+  +S     N +L I  V++EL+++R+K D +  K
Sbjct: 654 LVNILDDMAGQWPLDLAKELVGLAMISISVKSKPNPNLSIGRVLEELNKIRRKGDEIVAK 713

Query: 590 RESEVVTDRCANKEDSNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTS 649
            + +V+   C ++E S+DVPSVF+CPI QEVMK PHVAADGFSYELEA+E+WL  GHDTS
Sbjct: 714 EDRKVIIGGCIDREGSSDVPSVFLCPILQEVMKNPHVAADGFSYELEAIEQWLHSGHDTS 773

Query: 650 PMTNLRLKHKYLTPNHTLRSLIQEWHNKQSS 680
           PMTNLRLKH  LTPNH LRS ++EW +K+S+
Sbjct: 774 PMTNLRLKHTSLTPNHILRSFLEEWQSKKSA 804

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094967|ref|XP_002310308.1| predicted protein [Populus trichocarpa] gi|222853211|gb|EEE90758.1| predicted protein [Populus trichocarpa]

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/647 (55%), Positives = 465/647 (71%), Gaps = 22/647 (3%)

Query: 41  LVSLKGENDEGIMEDDQGVKFAKMRERVNFGNLWTKMFSGNGRNPNRLSICSRGPDADSP 100
           LV LKGE +EG MEDDQGV  AK   + NF +   KMF+ N  + ++L   S+  + ++ 
Sbjct: 85  LVFLKGEKEEGFMEDDQGVMVAK---KANFRSWLGKMFTDNSHDSHQLPATSKALENEN- 140

Query: 101 YSRSTWENCVQEIEIYFQHLASFNLDDASNSEDGDEILQTRAIEPNAAEQIDSNM--SVA 158
                WEN  QEIE YF+HL S NLD+    E+ D ILQ  + EP  AE   S M  SVA
Sbjct: 141 ----QWENYAQEIENYFEHLLSLNLDEEICKEEND-ILQADSTEPGVAEDAVSTMAMSVA 195

Query: 159 ERTEFMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRM 218
            +   M+ ++   ++MI++K++E+K ++ERCAKA+WA CLCNSR ++LE+  +E+V +R+
Sbjct: 196 AKMASMRRRMEGTQKMIQMKREESKVNSERCAKAEWAKCLCNSRVEELEAKIQEEVLNRL 255

Query: 219 EIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVI 278
           ++ + LD+ KEQ  E+ RD++ESK RLSSL+EL+SE+ +KLQ STMA+ H E QLEKAVI
Sbjct: 256 DLSKSLDAEKEQIQEIRRDIQESKKRLSSLVELRSEVYSKLQTSTMARSHVEVQLEKAVI 315

Query: 279 ARAEIVKDIEELRRQRDVLHRRIEFCKEKDAIGMVIRSSELSCAFREYAAEDIRLATEDF 338
           ARA++V++IEELR+QRD+L RRIEFCKEKDA+G V + +EL C +REY  +DIR AT++F
Sbjct: 316 ARAQMVREIEELRKQRDILRRRIEFCKEKDAVGTVAKLNELCCGYREYTTKDIRSATDNF 375

Query: 339 SERFRLKCAGDWTNVYRGRLNHASVAIKTL--NNGLSEEDFQAKVSFLTAVRHPHLVAVM 396
           SE  RLK  G WTNVYRGR+NH +VAIK L  +NGLS+E F AKV  L ++RHPHLVA++
Sbjct: 376 SESLRLKSGGHWTNVYRGRINHTTVAIKMLSFDNGLSQEAFLAKVKALNSIRHPHLVAII 435

Query: 397 GCCSELKCIVFEYMPNGNLRDKLF-TSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLH 455
           G CSE +CI+FEYM NG+LRD LF +SQRN+    R RA RW  RI +AHE+C GLSFLH
Sbjct: 436 GSCSEPRCIIFEYMHNGSLRDILFSSSQRNHGK--RNRAFRWNHRIRVAHEICSGLSFLH 493

Query: 456 STEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLN-VRSDIRAFGTLLLHLLTGRN 514
              PRP     LT S++LLDRNLVAKI G  L      N    +I+AFG LL  LLTGRN
Sbjct: 494 LARPRPFAQVHLTASNVLLDRNLVAKIGGFRLTQSPDANETLPNIQAFGVLLFQLLTGRN 553

Query: 515 WAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK 574
             GLVE+AMA+D+T L+ VLD  AG WPLDLA EL GIA +CL    +   D  +A   +
Sbjct: 554 RTGLVEEAMAMDKTALLTVLDERAGKWPLDLAYELVGIATRCL----ECKVDFSLAKTRE 609

Query: 575 ELDEVRKKADGLADKRESEVVTD-RCANKEDSNDVPSVFICPIFQEVMKTPHVAADGFSY 633
           EL+++ +KAD L  K   EVV +    ++EDS++ PS+F+CPI QEVMK PHVAADGFSY
Sbjct: 610 ELEKITRKADDLVAKSGCEVVVNGSIDDREDSSEAPSIFLCPILQEVMKNPHVAADGFSY 669

Query: 634 ELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNKQSS 680
           ELEA+EEWL    DTSPMTNLRLKHK+LTPNHTLRSLIQEW+ ++S+
Sbjct: 670 ELEAIEEWLNTQRDTSPMTNLRLKHKFLTPNHTLRSLIQEWNRRKST 716

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797581|ref|XP_002866675.1| kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297312510|gb|EFH42934.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/673 (51%), Positives = 468/673 (69%), Gaps = 28/673 (4%)

Query: 10  AGKSRTAVSGSYFVHHHMPDYCELFIICGGKLVSLKGENDEGIMEDDQGVKFAKMRERVN 69
           +GKS++A+SGS++V+ + P++CEL+IICGGK+VSLK +ND              +    N
Sbjct: 117 SGKSKSAISGSFYVYQNKPEFCELYIICGGKMVSLKRDND--------------VNNNSN 162

Query: 70  FGNLWTKMFSGNGRNPNRLSICSRGPDADSPYSRSTWENCVQEIEIYFQHLASFNLDDAS 129
             +   KMF   GRN +     S G + D   S S+W+  + EIEIYF+ L S NL++  
Sbjct: 163 IRSWIGKMFHDPGRNLD----SSSGNNDDPTSSGSSWDKNLHEIEIYFEQLLSLNLEEEV 218

Query: 130 NSEDGDEILQTRAIEPNAAEQIDSNMSVAERTEFMKSKINEAREMIRLKKKETKDDAERC 189
           N    +E  +      + A  +  +M+VAE+ E+++ K+NEA+ MI  K+ E K +AER 
Sbjct: 219 NENVVEEEHEEDN---DVALNVLQHMNVAEKLEYVRRKVNEAKLMIDEKRLEVKVNAERS 275

Query: 190 AKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLI 249
            KA+WAI LC+SR ++LE+  KE+   R ++Q  LDS KE   E    VE+ K +L SL 
Sbjct: 276 DKAEWAISLCSSRIEELEAWIKEESERREKLQVTLDSDKECIEEAKNYVEKGKTKLHSLA 335

Query: 250 ELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFCKEKDA 309
           ELQ ELS+K++    AK   E +LE+ V+ R E++ +IE+LR QRDV +RRIEFCK+K+A
Sbjct: 336 ELQEELSSKVKTMMEAKSQTEVELERVVLQRGEMIMEIEKLRNQRDVFNRRIEFCKKKEA 395

Query: 310 IGMVIRSSELSCAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLN 369
           IG V +  E+ C +REY AEDIRLATE +S+R RLK  G+WTNVYRGR+ H +VA+K + 
Sbjct: 396 IGSVSKE-EVKCGYREYVAEDIRLATESYSDRLRLKSGGNWTNVYRGRIEHTTVAVKVIG 454

Query: 370 NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMPNGNLRDKLFTSQRNYKN 428
           + LS+EDF AKV  L  +RHP+LVA+ G CS+  KCI+FEYM NGNLRD LFTSQR  + 
Sbjct: 455 DCLSDEDFGAKVKLLNEIRHPNLVAIAGFCSQRPKCILFEYMHNGNLRDNLFTSQRKSR- 513

Query: 429 CSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
             R++ L+W DRI IAH+VC GL FLHS +P+PIVHG LTPS ILLDRNLV KI+G G  
Sbjct: 514 --RSKILKWHDRIRIAHQVCSGLGFLHSVKPKPIVHGRLTPSKILLDRNLVPKITGFGFI 571

Query: 489 I-CDQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAE 547
           +  DQ + + D+ AFG LLLHLLTGRNW GL+ KAM+++QT++++ LD  AG WPL+LA+
Sbjct: 572 MHSDQSDTKPDVMAFGVLLLHLLTGRNWPGLL-KAMSMNQTSILRDLDQTAGKWPLELAK 630

Query: 548 ELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKADGLADKRESEVVTDRCANKEDSND 607
           E   +A+KC S ++  N D     +M+EL ++R+KAD        E  T+   ++ D ND
Sbjct: 631 EFGALAVKCSSVNRGGNTDFSTKEIMEELGKIREKADEFKTTGGYEEATNSSIDEGDPND 690

Query: 608 VPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTL 667
           +PSVF+CPI QEVMK PHVAADGFSYELEA+EEWL MGHDTSPMTNLRL ++ LTPNHTL
Sbjct: 691 IPSVFMCPILQEVMKNPHVAADGFSYELEAIEEWLSMGHDTSPMTNLRLDYQMLTPNHTL 750

Query: 668 RSLIQEWHNKQSS 680
           RSLIQ+WH+K+++
Sbjct: 751 RSLIQDWHSKRAA 763

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75333799|sp|Q9FGD7.1|PUB50_ARATH RecName: Full=Putative U-box domain-containing protein 50; AltName: Full=Plant U-box protein 50 gi|10257488|dbj|BAB11278.1| unnamed protein product [Arabidopsis thaliana]

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/672 (51%), Positives = 465/672 (69%), Gaps = 29/672 (4%)

Query: 11  GKSRTAVSGSYFVHHHMPDYCELFIICGGKLVSLKGENDEGIMEDDQGVKFAKMRERVNF 70
           GKS++A+SGS++V+ + P++CE +IICGGK+VSLK         +D     + +R  +  
Sbjct: 117 GKSKSAISGSFYVYQNKPEFCEFYIICGGKMVSLK---------NDVNNNNSNIRSWIG- 166

Query: 71  GNLWTKMFSGNGRNPNRLSICSRGPDADSPYSRSTWENCVQEIEIYFQHLASFNLDDASN 130
                KMF   GRN +R    S G + D   S S+W+  +QEIE YFQ L S NL   + 
Sbjct: 167 -----KMFHDPGRNLDR----SSGNNDDPTASGSSWDKNLQEIENYFQQLLSLNL---AE 214

Query: 131 SEDGDEILQTRAIEPNAAEQIDSNMSVAERTEFMKSKINEAREMIRLKKKETKDDAERCA 190
            E  + + + +  + + A  +  +M VAE+ E+++ K+NEA+ MI  K +E K +AER  
Sbjct: 215 EETENVVEEEQEDDDDVALNVLQHMDVAEKLEYVRRKVNEAKLMIDEKSREVKVNAERSN 274

Query: 191 KAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIE 250
           +A+WAI LCNSR  + E+  KE+   R ++Q  LDS KE   E    VE+ K +L SL E
Sbjct: 275 RAEWAISLCNSRIGEFEAWIKEESERREKLQATLDSDKECIEEAKNYVEKGKTKLHSLAE 334

Query: 251 LQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFCKEKDAI 310
           LQ  LS+K++    AK  AE +LE+ V+ R E++ +IE+LR QRDV +RRIEFCKE++ I
Sbjct: 335 LQEVLSSKVKTMMEAKSQAEVELERVVLQRGEMITEIEKLRSQRDVFNRRIEFCKEREVI 394

Query: 311 GMVIRSSELSCAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNN 370
           G V +  E+ C +REY AEDIRLATE +S+R RLK  G+WTNVYRGR+ H +VA+K + +
Sbjct: 395 GSVSKE-EVKCGYREYVAEDIRLATETYSDRLRLKSGGNWTNVYRGRIKHTTVAVKVIGD 453

Query: 371 GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSEL-KCIVFEYMPNGNLRDKLFTSQRNYKNC 429
            LS+E F AKV  L  +RHP+LVA+ G CS+  KC++FEYM NGNLRD LFTSQR  +  
Sbjct: 454 SLSDEAFGAKVKLLNEIRHPNLVAIAGFCSQRPKCLLFEYMHNGNLRDNLFTSQRKSR-- 511

Query: 430 SRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNI 489
            R++ L+W DRI IAH+VC GL FLHS +P+PIVHG LTPS ILLDRNLV KI+G GL +
Sbjct: 512 -RSKILKWHDRIRIAHQVCSGLGFLHSVKPKPIVHGRLTPSKILLDRNLVPKITGFGLIM 570

Query: 490 -CDQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE 548
             DQ + + D+ AFG LLLHLLTGRNW GL+ KAM+++QT++++ LD  AG WPL+LA+E
Sbjct: 571 HSDQSDTKPDVMAFGVLLLHLLTGRNWHGLL-KAMSMNQTSILRDLDQTAGKWPLELAKE 629

Query: 549 LAGIALKCLSADQDANRDLRIAGVMKELDEVRKKADGLADKRESEVVTDRCANKEDSNDV 608
              +A+KC S ++  N D     +M+EL ++R+KAD    K   E  T+   ++ D ND+
Sbjct: 630 FGALAVKCSSVNRGGNMDFSTKEIMEELGKIREKADEFKTKGGYEEATNSNMDEGDPNDI 689

Query: 609 PSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLR 668
           PSVF+CPI QEVMK PHVAADGFSYELEA++EWL MGHDTSPMTNLRL ++ LTPNHTLR
Sbjct: 690 PSVFMCPILQEVMKNPHVAADGFSYELEAIQEWLSMGHDTSPMTNLRLDYQMLTPNHTLR 749

Query: 669 SLIQEWHNKQSS 680
           SLIQ+WH+K+++
Sbjct: 750 SLIQDWHSKRAA 761

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451595|ref|XP_004143547.1| PREDICTED: putative U-box domain-containing protein 50-like [Cucumis sativus]

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/691 (49%), Positives = 484/691 (70%), Gaps = 19/691 (2%)

Query: 1   MGLSFMIPSAGKSRTAVSGSYFVHHHMPDYCELFIICGGKLVSLKGENDEGIMEDDQGVK 60
           +G +FM  S+ K + A+SGS++++ +   +CEL++I GGK V L+   DE IMEDD+GV+
Sbjct: 125 IGFTFMKSSSWKPKNAISGSFYIYRNKAHFCELYVIWGGKQVFLR---DERIMEDDRGVR 181

Query: 61  FAKMRERVNFGNLWTKMFSGNG---RNPNRLSICSRGPDADSPYSRSTWENCVQEIEIYF 117
            +K+  + +      KMF  +     + N     S   +++S  SR+ W++ VQE+E Y+
Sbjct: 182 ISKISTKHSLRGWLGKMFMEDPTYSSDRNLSLSSSSPRNSNSMSSRNYWDHNVQELENYY 241

Query: 118 QHLASFNLDDASNSE-DGDEILQTR-AIEPNAAEQIDSNMSVAERTEFMKSKINEAREMI 175
           + L S N+ +  + E D D +L+   + + N  + +DSN +  ER E +++KI EAR+ I
Sbjct: 242 EELLSLNVQEEEDCEQDQDGVLENSCSTQFNILDYLDSNTNPEERIEHLRTKIEEARKSI 301

Query: 176 RLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVI 235
           +L + ETK  +ER AKA+WAI LC+ R D+LE+  KE+V  R E+Q++L S KE   E++
Sbjct: 302 QLMRDETKGSSERQAKAEWAINLCSQRTDELEAKIKEEVTIREELQKELGSAKEYILEIV 361

Query: 236 RDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRD 295
            +++ESK RLSSL+ELQ+ELS+KLQ+ST  K   EAQLEK    +  + ++IEELRRQR+
Sbjct: 362 AEIKESKIRLSSLLELQAELSSKLQISTAEKLRLEAQLEKTAKTKKGMEREIEELRRQRE 421

Query: 296 VLHRRIEFCKEKDAIGMVIRSSELSCAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYR 355
           +LHRRIEFCK+KDAIGM  RS+E+SC+ R Y  E+I LAT++FSE+ RL      + VYR
Sbjct: 422 ILHRRIEFCKDKDAIGMGERSTEVSCSTRVYTVEEISLATDNFSEQMRLS-----SRVYR 476

Query: 356 GRLNHASVAIKTLNNG--LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELKCIVFEYMPNG 413
           GR+NH SVAI+ + +G  LSE+DFQ+KV  L+ +RHPHL+A++G C ELKCIVF+YM NG
Sbjct: 477 GRINHMSVAIQMIASGNRLSEDDFQSKVELLSNIRHPHLIAMIGFCPELKCIVFDYMHNG 536

Query: 414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSIL 473
           +L D+L  S  N ++   +  L W +RI IA EVC GLSFLH  +P+PI HG LT S IL
Sbjct: 537 SLSDRLLPSNSNKRSKKISHPLMWNERIRIASEVCSGLSFLHQAQPQPISHGKLTLSKIL 596

Query: 474 LDRNLVAKISGLGLNICDQLN-VRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQ 532
           LD+NL AK++G GL+  D+ +    DIRAFG LLLH++TGR WAG +E+A+++ +  L+Q
Sbjct: 597 LDQNLAAKVTGFGLDELDESSGTELDIRAFGALLLHIVTGRTWAGQIEEALSMGKVGLVQ 656

Query: 533 VLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKADGL--ADKR 590
           +LD  AG WPL L + L G+AL+C +A    + D+++   M+E+DE+++KAD L   + +
Sbjct: 657 ILDDKAGQWPLSLVDGLLGLALRC-AAPNGPSPDVKLGTAMEEIDEIKRKADDLVMGNGK 715

Query: 591 ESEVVTDRCANKEDSNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSP 650
             E +    A  ED +DVP +FICPI QEVMK PHVAADGFSYELEA+E+W+  GH+TSP
Sbjct: 716 NVEDIEGADAANEDVDDVPRIFICPILQEVMKNPHVAADGFSYELEAIEQWIRAGHETSP 775

Query: 651 MTNLRLKHKYLTPNHTLRSLIQEWHNKQSSV 681
           MTNL+L+H YLTPNHTLRSLIQ+W N+ S+V
Sbjct: 776 MTNLKLQHPYLTPNHTLRSLIQDWQNENSNV 806

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256481|ref|NP_201353.4| U-box domain-containing protein kinase family protein [Arabidopsis thaliana] gi|332010681|gb|AED98064.1| U-box domain-containing protein kinase family protein [Arabidopsis thaliana]

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/683 (50%), Positives = 462/683 (67%), Gaps = 36/683 (5%)

Query: 1   MGLSFM-IPSAGKSRTAVSGSYFVHHHMPDYCELFIICGGKLVSLKGENDEGIMEDDQGV 59
           MG++FM   S+ KS++A+SGS++V+ + P++CE +IICGGK+VSLK         +D   
Sbjct: 138 MGITFMRSSSSWKSKSAISGSFYVYQNKPEFCEFYIICGGKMVSLK---------NDVNN 188

Query: 60  KFAKMRERVNFGNLWTKMFSGNGRNPNRLSICSRGPDADSPYSRSTWENCVQEIEIYFQH 119
             + +R  +       KMF   GRN +R    S G + D   S S+W+  +QEIE YFQ 
Sbjct: 189 NNSNIRSWIG------KMFHDPGRNLDR----SSGNNDDPTASGSSWDKNLQEIENYFQQ 238

Query: 120 LASFNLDDASNSEDGDEILQTRAIEPNAAEQIDSNMSVAERTEFMKSKINEAREMIRLKK 179
           L S NL +               +E    +  D  ++V +    +  K+NEA+ MI  K 
Sbjct: 239 LLSLNLAEEE---------TENVVEEEQEDDDDVALNVLQHMVKILRKVNEAKLMIDEKS 289

Query: 180 KETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVE 239
           +E K +AER  +A+WAI LCNSR  + E+  KE+   R ++Q  LDS KE   E    VE
Sbjct: 290 REVKVNAERSNRAEWAISLCNSRIGEFEAWIKEESERREKLQATLDSDKECIEEAKNYVE 349

Query: 240 ESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHR 299
           + K +L SL ELQ  LS+K++    AK  AE +LE+ V+ R E++ +IE+LR QRDV +R
Sbjct: 350 KGKTKLHSLAELQEVLSSKVKTMMEAKSQAEVELERVVLQRGEMITEIEKLRSQRDVFNR 409

Query: 300 RIEFCKEKDAIGMVIRSSELSCAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLN 359
           RIEFCKE++ IG V +  E+ C +REY AEDIRLATE +S+R RLK  G+WTNVYRGR+ 
Sbjct: 410 RIEFCKEREVIGSVSKE-EVKCGYREYVAEDIRLATETYSDRLRLKSGGNWTNVYRGRIK 468

Query: 360 HASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSEL-KCIVFEYMPNGNLRDK 418
           H +VA+K + + LS+E F AKV  L  +RHP+LVA+ G CS+  KC++FEYM NGNLRD 
Sbjct: 469 HTTVAVKVIGDSLSDEAFGAKVKLLNEIRHPNLVAIAGFCSQRPKCLLFEYMHNGNLRDN 528

Query: 419 LFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL 478
           LFTSQR  +   R++ L+W DRI IAH+VC GL FLHS +P+PIVHG LTPS ILLDRNL
Sbjct: 529 LFTSQRKSR---RSKILKWHDRIRIAHQVCSGLGFLHSVKPKPIVHGRLTPSKILLDRNL 585

Query: 479 VAKISGLGLNI-CDQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGN 537
           V KI+G GL +  DQ + + D+ AFG LLLHLLTGRNW GL+ KAM+++QT++++ LD  
Sbjct: 586 VPKITGFGLIMHSDQSDTKPDVMAFGVLLLHLLTGRNWHGLL-KAMSMNQTSILRDLDQT 644

Query: 538 AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKADGLADKRESEVVTD 597
           AG WPL+LA+E   +A+KC S ++  N D     +M+EL ++R+KAD    K   E  T+
Sbjct: 645 AGKWPLELAKEFGALAVKCSSVNRGGNMDFSTKEIMEELGKIREKADEFKTKGGYEEATN 704

Query: 598 RCANKEDSNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLK 657
              ++ D ND+PSVF+CPI QEVMK PHVAADGFSYELEA++EWL MGHDTSPMTNLRL 
Sbjct: 705 SNMDEGDPNDIPSVFMCPILQEVMKNPHVAADGFSYELEAIQEWLSMGHDTSPMTNLRLD 764

Query: 658 HKYLTPNHTLRSLIQEWHNKQSS 680
           ++ LTPNHTLRSLIQ+WH+K+++
Sbjct: 765 YQMLTPNHTLRSLIQDWHSKRAA 787

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499876|ref|XP_004160941.1| PREDICTED: putative U-box domain-containing protein 50-like [Cucumis sativus]

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 318/691 (46%), Positives = 455/691 (65%), Gaps = 50/691 (7%)

Query: 1   MGLSFMIPSAGKSRTAVSGSYFVHHHMPDYCELFIICGGKLVSLKGENDEGIMEDDQGVK 60
           +G +FM  S+ K + A+SGS++++ +   +CEL++I GGK V L+   DE IMEDD+GV+
Sbjct: 125 IGFTFMKSSSWKPKNAISGSFYIYRNKAHFCELYVIWGGKQVFLR---DERIMEDDRGVR 181

Query: 61  FAKMRERVNFGNLWTKMFSGN---GRNPNRLSICSRGPDADSPYSRSTWENCVQEIEIYF 117
            +K+  + +      KMF  +     + N     S   +++S  SR+ W++ VQE+E Y+
Sbjct: 182 ISKISTKHSLRGWLGKMFMEDPTYSSDRNLSLSSSSPRNSNSMSSRNYWDHNVQELENYY 241

Query: 118 QHLASFNLDDASNSE-DGDEILQTR-AIEPNAAEQIDSNMSVAERTEFMKSKINEAREMI 175
           + L S N+ +  + E D D +L+   + + N  + +DSN +  ER E +++KI EAR+ I
Sbjct: 242 EELLSLNVQEEEDCEQDQDGVLENSCSTQFNILDYLDSNTNPEERIEHLRTKIEEARKSI 301

Query: 176 RLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVI 235
           +L + ETK  +ER AKA+WAI LC+ R D+LE+  KE+V  R E+Q++L S         
Sbjct: 302 QLMRDETKGSSERQAKAEWAINLCSQRTDELEAKIKEEVTIREELQKELGS--------- 352

Query: 236 RDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRD 295
               ++ N  S  I  +  +      S   KG               + ++IEELRRQR+
Sbjct: 353 ----QATNFHSRKIAFRGSIGED---SKNKKG---------------MEREIEELRRQRE 390

Query: 296 VLHRRIEFCKEKDAIGMVIRSSELSCAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYR 355
           +LHRRIEFCK+KDAIGM  RS+E+SC+ R Y  E+I LAT++FSE+ RL      + VYR
Sbjct: 391 ILHRRIEFCKDKDAIGMGERSTEVSCSTRVYTVEEISLATDNFSEQMRLS-----SRVYR 445

Query: 356 GRLNHASVAIKTLNNG--LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELKCIVFEYMPNG 413
           GR+NH SVAI+ + +G  LSE+DFQ+KV  L+ +RHPHL+A++G C ELKCIVF+YM NG
Sbjct: 446 GRINHMSVAIQMIASGNRLSEDDFQSKVELLSNIRHPHLIAMIGFCPELKCIVFDYMHNG 505

Query: 414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSIL 473
           +L D+L  S  N ++   +  L W +RI IA EVC GLSFLH  +P+PI HG LT S IL
Sbjct: 506 SLSDRLLPSNSNKRSKKISHPLMWNERIRIASEVCSGLSFLHQAQPQPISHGKLTLSKIL 565

Query: 474 LDRNLVAKISGLGLNICDQLN-VRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQ 532
           LD+NL AK++G GL+  D+ +    DIRAFG LLLH++TGR WAG +E+A+++ +  L+Q
Sbjct: 566 LDQNLAAKVTGFGLDELDESSGTELDIRAFGALLLHIVTGRTWAGQIEEALSMGKVGLVQ 625

Query: 533 VLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKADGL--ADKR 590
           +LD  AG WPL L + L G+AL+C +A    + D+++   M+E+DE+++KAD L   + +
Sbjct: 626 ILDDKAGQWPLSLVDGLLGLALRC-AAPNGPSPDVKLGTAMEEIDEIKRKADDLVMGNGK 684

Query: 591 ESEVVTDRCANKEDSNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSP 650
             E +    A  ED +DVP +FICPI QEVMK PHVAADGFSYELEA+E+W+  GH+TSP
Sbjct: 685 NVEDIEGADAANEDVDDVPRIFICPILQEVMKNPHVAADGFSYELEAIEQWIRAGHETSP 744

Query: 651 MTNLRLKHKYLTPNHTLRSLIQEWHNKQSSV 681
           MTNL+L+H YLTPNHTLRSLIQ+W N+ S+V
Sbjct: 745 MTNLKLQHPYLTPNHTLRSLIQDWQNENSNV 775

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	683
TAIR|locus:2101353	805	AT3G49060 [Arabidopsis thalian	0.919	0.780	0.299	7.2e-68
TAIR|locus:2050669	834	AT2G45910 [Arabidopsis thalian	0.253	0.207	0.445	5.4e-61
TAIR|locus:504954932	789	AT5G57035 [Arabidopsis thalian	0.370	0.320	0.333	5.7e-54
TAIR|locus:2151641	796	AT5G61560 [Arabidopsis thalian	0.301	0.258	0.370	1.1e-52
TAIR|locus:2117343	835	AT4G25160 [Arabidopsis thalian	0.644	0.526	0.262	2.2e-52
TAIR|locus:2047605	801	AT2G19410 [Arabidopsis thalian	0.385	0.328	0.293	3.5e-51
TAIR|locus:2176177	819	AT5G51270 [Arabidopsis thalian	0.292	0.244	0.348	7.6e-50
TAIR|locus:2061012	788	AT2G24370 [Arabidopsis thalian	0.464	0.402	0.289	2.2e-40
TAIR|locus:2180677	703	AT5G26150 [Arabidopsis thalian	0.382	0.371	0.332	7.4e-39
TAIR|locus:2030245	697	AT1G72760 [Arabidopsis thalian	0.313	0.307	0.357	1.7e-38

TAIR|locus:2101353 AT3G49060 [Arabidopsis thaliana (taxid:3702)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 209/697 (29%), Positives = 336/697 (48%)

Query:    12 KSRTAVSGSYFVHHHMPDYCELFIICGGKLVSLKGENDEGIMEDDQGVKFAKMRERVNFG 71
             KS+ A+    FV    PD C ++ +C G L+  +  ND+    + Q +      +  N  
Sbjct:   146 KSKKAI----FVCKKAPDSCHIWFLCKGYLIFTRASNDDS--NNRQTMPPLVQLDSDNET 199

Query:    72 NLWTKMFSGNGRNPNRLSICSRGPDADSPYSRSTWENCVQEIEIYFQHLASFNLDDASNS 131
                 K+ S   R   R        D +    +   E         F   +S +  +    
Sbjct:   200 RKSEKLESSYMRRRLRYWRSLLEQDGEKDTGQLEREKVEPRAPPLFSSGSSSSFGEPVGP 259

Query:   132 ED-GDEILQTRAIEPNAAEQIDSNMSVAERTEFMKSKINEAREMIRLKKKETKDDAERCA 190
             E    E++ +  +  +  E+ +    VA +       +++  +  R    E     E  A
Sbjct:   260 EPVSPELVDSDTLNTSNVEEKEREGDVARKVHRYDKAMHDIGQSDRTVYGEAGKKWEEDA 319

Query:   191 KAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEES----KNRXX 246
                 A+C    +A  LE L  ++ + R  ++   + L+++  EV   +E++    K    
Sbjct:   320 STTEALC----KAKALEGLCIKESSQRKRLE---ELLEKEKLEVKMVIEQNNGFMKELQM 372

Query:   247 XXXXXXXXXXNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFCKE 306
                          +L  + K H E + + A+    E++K   + R +  + H      KE
Sbjct:   373 VQGRNLKLESQMRKLQDLEKEHGE-KFDTAM----ELLKSFRQKRDEIRIDHENA--VKE 425

Query:   307 KDAIGMVIR--SSELSCA-FREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASV 363
              +A+  +++  + E S +   +Y+  +I  AT +F   ++L   G + +VY+G L H  V
Sbjct:   426 VNALRRLVKGETGESSGSEMLDYSFMEINEATNEFDPSWKLG-EGKYGSVYKGNLQHLQV 484

Query:   364 AIKTLNN--GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELKCIVFEYMPNGNLRDKLFT 421
             A+K L +   L+  +F+ +V  L+ VRHP+LV +MG C E + ++++Y+PNG+L D  F+
Sbjct:   485 AVKMLPSYGSLNHFEFERRVEILSRVRHPNLVTLMGACPESRSLIYQYIPNGSLED-CFS 543

Query:   422 SQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAK 481
             S+ N        AL W  RI IA E+C  L FLHS  P  I+HG+L PS ILLD NLV K
Sbjct:   544 SENNVP------ALSWESRIRIASEICSALLFLHSNIPC-IIHGNLKPSKILLDSNLVTK 596

Query:   482 ISGLGLN--------------------ICDQLNVRSDIRAFGTLLLHLLTGRNWAGLVEK 521
             I+  G++                    +  ++ + SDI AFG +LL LLT R  +G++  
Sbjct:   597 INDYGISQLIPIDGLDKSDPHVDPHYFVSREMTLESDIYAFGIILLQLLTRRPVSGILRD 656

Query:   522 AM-ALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVR 580
                AL+   +  VLD +AG WP+   ++LA +A++C   +     DL +  V++ +D  R
Sbjct:   657 VKCALENDNISAVLDNSAGDWPVARGKKLANVAIRCCKKNPMNRPDLAV--VLRFID--R 712

Query:   581 KKADGLADKRESEVVTDRCANKEDSNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEE 640
              KA  +     SE  T   AN+      PS ++CPIFQEVMK P +AADGF+YE EA+ E
Sbjct:   713 MKAPEVPS---SE--TSSYANQNVPRRPPSHYLCPIFQEVMKDPLIAADGFTYEAEAIRE 767

Query:   641 WLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNK 677
             WL  GHDTSPMTNL+++   L PNH L   IQ+W N+
Sbjct:   768 WLANGHDTSPMTNLKMEDCNLIPNHALHLAIQDWQNQ 804

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2050669 AT2G45910 [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 5.4e-61, Sum P(2) = 5.4e-61
 Identities = 82/184 (44%), Positives = 105/184 (57%)

Query:   492 QLNVRSDIRAFGTLLLHLLTGRNWAGLV-EKAMALDQTTLMQVLDGNAGIWPLDLAEELA 550
             +L  +SD+ +FG +LL LLTGR    +  E   ALD  TL  +LD  AG WP   AE+LA
Sbjct:   656 ELTPKSDVYSFGIILLRLLTGRPALRISNEVKYALDNGTLNDLLDPLAGDWPFVQAEQLA 715

Query:   551 GIALKCLSADQDANRDLRIAGVMKELDEVRKKADGLADKRESEVVTDRCANKEDSNDVPS 610
              +AL+C     +   DL    V + L+ +R  + G +              + +    P 
Sbjct:   716 RLALRCCETVSENRPDLGTE-VWRVLEPMRASSGGSSSFH---------LGRNEHRIAPP 765

Query:   611 VFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSL 670
              FICPIFQEVM+ PHVAADGF+YE EA+  WL   HDTSPMTN++L H  L  NH LRS 
Sbjct:   766 YFICPIFQEVMQDPHVAADGFTYEAEAIRAWLDSEHDTSPMTNVKLSHTSLIANHALRSA 825

Query:   671 IQEW 674
             IQEW
Sbjct:   826 IQEW 829

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:504954932 AT5G57035 [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 5.7e-54, Sum P(3) = 5.7e-54
 Identities = 95/285 (33%), Positives = 150/285 (52%)

Query:   217 RMEIQRDLDSLKEQSCE-VIRDVEESKNRXXXXXXXXXXXXNKLQLSTMAKGHAEAQLEK 275
             R E+Q  L S+ +Q+CE ++    + ++               L+   M +  A  + EK
Sbjct:   302 RKEVQTTL-SMYKQACEELVHKQTQVQSLSSECIKETERVITALEKEEMRRKAAAEEKEK 360

Query:   276 AVIARAEIVKDIEELRRQRDVLHRRIEFCK----EKDAIGMVIRSSEL-------SCAFR 324
              + A    VK++EE +    +L +  EFC+    E DA+   I   ++          +R
Sbjct:   361 HLKA----VKEVEEAK---SMLAK--EFCERQLAELDALKQSIEKQKVIEQLFLRDGRYR 411

Query:   325 EYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSE--EDFQAKVS 382
             +Y  E+I  AT++FS R ++   G +  VY+  L+H  VA+K L     E  E+F  ++S
Sbjct:   412 KYTKEEIAAATDNFSSR-KIIGEGGYGKVYKCSLDHTPVALKVLKPDSVEKKEEFLKEIS 470

Query:   383 FLTAVRHPHLVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIH 442
              L+ +RHPH+V ++G C E  C+V+EYM NG+L   +  S +  K      +L W  R  
Sbjct:   471 VLSQLRHPHVVLLLGACPENGCLVYEYMENGSLDCHI--SPKKGKP-----SLSWFIRFR 523

Query:   443 IAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
             I +E   GL+FLH+++P PIVH  L P +ILLDRN V+KI  +GL
Sbjct:   524 IIYETACGLAFLHNSKPEPIVHRDLKPGNILLDRNFVSKIGDVGL 568

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2151641 AT5G61560 [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 1.1e-52, Sum P(3) = 1.1e-52
 Identities = 79/213 (37%), Positives = 124/213 (58%)

Query:   281 AEIVKD-IEELRRQR-DVLHRRIEFCKEKDAIGMVIRSSELSCA-FREYAAEDIRLATED 337
             AE+V++ IE    +R +   R  E  KEK  +   +    L    + ++  E+I  AT  
Sbjct:   369 AELVRECIERETEERLEAEARAEEVRKEKQRLEDALEGGPLQRQQYMKFEWEEIVEATSS 428

Query:   338 FSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSE--EDFQAKVSFLTAVRHPHLVAV 395
             FS+  ++   G + +VYR  L+H +VA+K L++  S   + F  ++  L+ +RHPHL+ +
Sbjct:   429 FSDELKIGVGG-YGSVYRCNLHHTTVAVKVLHSDKSSLTKQFHQELEILSKIRHPHLLLL 487

Query:   396 MGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLH 455
             +G C E   +V+EYM NG+L ++L   + N  +  +   LRW +R  IA E+   L FLH
Sbjct:   488 LGACPERGSLVYEYMHNGSLEERLMKRRPNV-DTPQPPPLRWFERFRIAWEIASALYFLH 546

Query:   456 STEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
             + EPRPIVH  L P++ILLDRN V+KI  +GL+
Sbjct:   547 TNEPRPIVHRDLKPANILLDRNNVSKIGDVGLS 579

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0002238 "response to molecule of fungal origin" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2117343 AT4G25160 [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 2.2e-52, Sum P(2) = 2.2e-52
 Identities = 131/499 (26%), Positives = 225/499 (45%)

Query:    27 MPDYCELFIICGGKLVSLKGENDEGIMEDDQGVKFAKMRERVNFGNLWTKMFSGN-GRNP 85
             MP++C ++++  GKL  ++  + +G          A +RE    G+  T   SG+ G   
Sbjct:   160 MPNFCTVYVVSKGKLSCVRPSDSDGN---------ATIRED---GSERTNSSSGSSGPTS 207

Query:    86 NRLSICSRGPDADS-PYSRSTWENCVQEIEIYFQHLASFNLDDASNSEDGDEILQTRAIE 144
             +   + S   D+ S P S       +Q         AS  ++ +S   D    +   A E
Sbjct:   208 DSSDVMSSAHDSQSRPLSLPVRR--MQHFPAIAGQ-ASVPMETSSVGSDETRCMSLDAEE 264

Query:   145 PNAAEQID-SNMSVAERTEFMKSKINEAREMIRLKK--KETKDDAERCAKAKWAICLCNS 201
                   I+ S+     R    +    E +E +      +E  +   R + +   +   +S
Sbjct:   265 ARDVSSINRSSTDTTSRWTPRRRDYEERKEAMSSSSSNREYGNFGTRFSWSGMGVDTTHS 324

Query:   202 RADQL----------ESLTKEDVASRMEIQR---DLDSLKEQSCEVIRDVEESKNRXXXX 248
             RA Q           +S T   V    E+++   +L  ++E       +  ++  +    
Sbjct:   325 RASQQASNMSDALSEQSYTDNQVNLNFEVEKLRAELRHVQEMYAVAQTETFDASRKLGEL 384

Query:   249 XXXXXXXXNKLQLSTMAKGHAE--AQLEKAVIARAEIVKDIEELRR--QRDVLHRR---- 300
                      KL+   + +  A   A+ EK    +A   +D E +R   +R++  RR    
Sbjct:   385 NQRRLEEAIKLEELKLKEYEARELAEKEKQNFEKAR--RDAESMRERAEREIAQRREAER 442

Query:   301 --IEFCKEKDAIGMVIRSSELSCAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRL 358
                   KEK+ +   + S +L   ++ +A E+I  AT  FSE  ++   G +  VY+  L
Sbjct:   443 KSARDTKEKEKLEGTLGSPQLQ--YQHFAWEEIMAATSSFSEELKIGM-GAYGAVYKCNL 499

Query:   359 NHASVAIKTLN---NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELKCIVFEYMPNGNL 415
             +H +  +K L    N LS++ FQ ++  L+ +RHPHLV ++G C E   +V+EYM NG+L
Sbjct:   500 HHTTAVVKVLQSAENQLSKQ-FQQELEILSKIRHPHLVLLLGACPEQGALVYEYMENGSL 558

Query:   416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD 475
              D+LF  Q N      +  L W +R  IA EV   L FLH ++P+PI+H  L P++ILLD
Sbjct:   559 EDRLF--QVN-----NSPPLPWFERFRIAWEVAAALVFLHKSKPKPIIHRDLKPANILLD 611

Query:   476 RNLVAKISGLGLNICDQLN 494
              N V+K+  +GL+   Q++
Sbjct:   612 HNFVSKVGDVGLSTMVQVD 630

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0002238 "response to molecule of fungal origin" evidence=RCA

TAIR|locus:2047605 AT2G19410 [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 3.5e-51, Sum P(3) = 3.5e-51
 Identities = 85/290 (29%), Positives = 147/290 (50%)

Query:   215 ASRMEIQRDLDSLKEQSCEVI----RDVEESKNRXXXXXXXXXXXXNKLQLSTMAKGHAE 270
             + ++EI+ +++ LK +    +    +  EE  +             N+ +    A    E
Sbjct:   306 SKKVEIEEEVERLKNELQSTVFKYKQACEELFSTQNKVKMLSTEYLNESKRVNNAVEKEE 365

Query:   271 AQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFCK----EKDAIGMVIRSSEL------- 319
              Q   A + +   +K ++E+   + +L R  EFC+    E +A+   +   ++       
Sbjct:   366 LQRNTAALEKERYMKAVKEVETAKALLAR--EFCQRQIAEVNALRTYLEKKKVIDQLLGT 423

Query:   320 SCAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKT--LNNGLSEEDF 377
                +R+Y  E+I  ATE FS   ++   G +  VY+  L+    A+K   L+    +++F
Sbjct:   424 DHRYRKYTIEEIVTATEGFSPE-KVIGEGGYGKVYQCSLDSTPAAVKVVRLDTPEKKQEF 482

Query:   378 QAKVSFLTAVRHPHLVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRW 437
               +V  L+ +RHPH+V ++G C E  C+V+EY+ NG+L + +F    + KN      L W
Sbjct:   483 LKEVEVLSQLRHPHVVLLLGACPENGCLVYEYLENGSLEEYIF----HRKN---KPPLPW 535

Query:   438 LDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
               R  +  EV  GL+FLHS++P PIVH  L P +ILL+RN V+KI+ +GL
Sbjct:   536 FIRFRVIFEVACGLAFLHSSKPEPIVHRDLKPGNILLNRNYVSKIADVGL 585

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2176177 AT5G51270 [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 7.6e-50, Sum P(2) = 7.6e-50
 Identities = 77/221 (34%), Positives = 125/221 (56%)

Query:   278 IARAEIVKDIEELRRQRDVLHRR-IEF-----CKEKDAIGMVIRSSELS--CAFREYAAE 329
             IA+ E  K  ++ R +R+   RR  E       KEK+ +     SS ++    ++E+  E
Sbjct:   395 IAKKETEKFEQKRREEREAAQRREAEMKATHEAKEKEKLE---ESSLVAPKLQYQEFTWE 451

Query:   330 DIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSE--EDFQAKVSFLTAV 387
             +I  AT  FSE  ++   G + +VY+  L+H   A+K L++  S   + F  ++  L+ +
Sbjct:   452 EIINATSSFSEDLKIGM-GAYGDVYKCNLHHTIAAVKVLHSAESSLSKQFDQELEILSKI 510

Query:   388 RHPHLVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEV 447
             RHPHLV ++G C +   +V+EYM NG+L D+LF  Q N      ++ + W  R+ IA EV
Sbjct:   511 RHPHLVLLLGACPDHGALVYEYMENGSLEDRLF--QVN-----DSQPIPWFVRLRIAWEV 563

Query:   448 CLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
                L FLH ++P PI+H  L P++ILL+ N V+K+  +GL+
Sbjct:   564 ASALVFLHKSKPTPIIHRDLKPANILLNHNFVSKVGDVGLS 604

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2061012 AT2G24370 [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 2.2e-40, Sum P(3) = 2.2e-40
 Identities = 98/338 (28%), Positives = 173/338 (51%)

Query:   153 SNMSVAERTEFMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKE 212
             SN S  + +  +    N  R  + +    T  ++ER + A  +I    +   +L+   K+
Sbjct:   304 SNFSDMDYSSSLDQSSNYGRRSVDMNSP-TDFESERFSSASQSIDDVEAEMRRLKLELKQ 362

Query:   213 DVASRMEIQRDLDSLKEQSCEVIR-DVEESKNRXXXXXXXXXXXXNKLQLSTMAKGHAEA 271
              +       ++  + K+++ E+ R  +EE +                L ++   K  ++A
Sbjct:   363 TMEMYSTACKEALTAKQKATELQRWKLEEERKLEEARNAEEAA----LAIAEKEKAKSKA 418

Query:   272 QLEKAVIARAEIVKDIEELRRQRDVLHRRIEFCKEKDAIGMVIRSSELSCAFREYAAEDI 331
              +E A  A+   + ++E  +R    + + ++  +EK      + +S++   +R+Y+ EDI
Sbjct:   419 AMEAAEAAQR--IAELEAKKRVNAEM-KALKESEEKTKALTALANSDVR--YRKYSIEDI 473

Query:   332 RLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSE--EDFQAKVSFLTAVRH 389
              LATE F+E++++   G +  VY+  L+H  VA+K L    ++    FQ +V  L+ +RH
Sbjct:   474 ELATEFFAEKYKIG-EGGYGPVYKCYLDHTPVAVKVLRPDAAQGRSQFQQEVEVLSCIRH 532

Query:   390 PHLVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCL 449
             P++V ++G C E  C+V+E+M NG+L D+LF           +  L W  R  IA E+  
Sbjct:   533 PNMVLLLGACPECGCLVYEFMANGSLEDRLF-------RLGNSPPLSWQMRFRIAAEIGT 585

Query:   450 GLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
             GL FLH  +P P+VH  L P +ILLDRN V+KIS +GL
Sbjct:   586 GLLFLHQAKPEPLVHRDLKPGNILLDRNFVSKISDVGL 623

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002238 "response to molecule of fungal origin" evidence=RCA

TAIR|locus:2180677 AT5G26150 [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 7.4e-39, Sum P(3) = 7.4e-39
 Identities = 92/277 (33%), Positives = 143/277 (51%)

Query:   217 RMEIQRDLDSLKEQSCEVIRDVEESKNRXXXXXXXXXXXXNKLQLSTMAKGHAEAQLEKA 276
             ++E+++ +D +   +C+     +   N              K +LS  A   A A++EKA
Sbjct:   299 KLELKQTMD-MYSSACKEALTAKRKANELNQWKIEEARKFEKARLSEEA-ALAVAEIEKA 356

Query:   277 ----VIARAEIVKDIEELRRQRDVLHRRIEFCKEKDAIGMVIRSSELSCAFREYAAEDIR 332
                  +  AE  + + EL  QR          +EKD    V   +     +R+Y+ E+I 
Sbjct:   357 KCRTAVEAAEKAQRMAELEGQRRKQAEMKAVSEEKDKDRAVSALAHNDVRYRKYSIEEIE 416

Query:   333 LATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSE--EDFQAKVSFLTAVRHP 390
              ATE F+   ++   G +  VY G L+H  VAIK L    ++  + FQ +V  L ++RHP
Sbjct:   417 EATERFANHRKIG-EGGYGPVYNGELDHTPVAIKVLRPDAAQGKKQFQQEVEVLCSIRHP 475

Query:   391 HLVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLG 450
             H+V ++G C E  C+V+E+M NG+L D+LF +         +  L W  R  IA E+   
Sbjct:   476 HMVLLLGACPEYGCLVYEFMENGSLEDRLFRT-------GNSPPLSWRKRFEIAAEIATA 528

Query:   451 LSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
             LSFLH  +P P+VH  L P++ILLD+N V+KIS +GL
Sbjct:   529 LSFLHQAKPEPLVHRDLKPANILLDKNYVSKISDVGL 565

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2030245 AT1G72760 [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.7e-38, Sum P(3) = 1.7e-38
 Identities = 83/232 (35%), Positives = 126/232 (54%)

Query:   258 KLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFCKEKDAIGMVIRSS 317
             K++L          + + A    AEI K I ++  Q+    R +E     D   M    S
Sbjct:   310 KIELPRALSDRETQKTQSAAFQAAEIAKRIAKMESQK---RRLLEMQANLDKQMMFTTVS 366

Query:   318 ELSCAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSE--E 375
                  +R Y+ +D+  AT  FS+  ++   G +  VY+  L++ SVAIK L +G++E  +
Sbjct:   367 -----YRRYSIKDVEDATYGFSDALKIG-EGGYGPVYKAVLDYTSVAIKILKSGITEGLK 420

Query:   376 DFQAKVSFLTAVRHPHLVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARAL 435
              FQ ++  L+++RHP++V ++G C E  C+V+EYM NG L D+LF      KN      L
Sbjct:   421 QFQQEIEVLSSMRHPNMVILLGACPEYGCLVYEYMENGTLEDRLFC-----KN--NTPPL 473

Query:   436 RWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
              W  R  IA E+  GL FLH  +P P+VH  L P++ILLD++L  KIS +GL
Sbjct:   474 SWRARFRIASEIATGLLFLHQAKPEPLVHRDLKPANILLDKHLTCKISDVGL 525

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FGD7	PUB50_ARATH	6, ., 3, ., 2, ., -	0.5104	0.9414	0.8405	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00011816001 SubName- Full=Chromosome undetermined scaffold_340, whole genome shotgun sequence; (802 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	683
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	6e-27
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	3e-26
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	4e-22
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	4e-22
smart00504	63	smart00504, Ubox, Modified RING finger domain	9e-22
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	5e-20
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	1e-15
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	7e-15
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	8e-15
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	2e-14
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	2e-14
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	6e-14
pfam04564	73	pfam04564, U-box, U-box domain	3e-12
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	4e-12
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	5e-12
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	2e-11
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	2e-11
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	1e-10
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	2e-10
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	3e-10
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	4e-10
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	1e-09
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	1e-09
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	2e-09
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	2e-09
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	3e-09
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	4e-09
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	4e-09
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	8e-09
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	9e-09
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	1e-08
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	1e-08
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	1e-08
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	1e-08
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	2e-08
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	2e-08
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	4e-08
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	6e-08
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	7e-08
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	9e-08
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	1e-07
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	2e-07
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	2e-07
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	3e-07
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	3e-07
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	4e-07
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	5e-07
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	6e-07
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	6e-07
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	7e-07
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	1e-06
cd05037	259	cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) dom	2e-06
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	2e-06
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	2e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-06
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	3e-06
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	3e-06
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	5e-06
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	7e-06
cd05091	283	cd05091, PTKc_Ror2, Catalytic domain of the Protei	8e-06
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	8e-06
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	9e-06
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	1e-05
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	1e-05
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	1e-05
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	1e-05
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	1e-05
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	2e-05
cd05115	257	cd05115, PTKc_Zap-70, Catalytic domain of the Prot	2e-05
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	3e-05
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	4e-05
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	5e-05
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	5e-05
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	5e-05
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	5e-05
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	8e-05
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	8e-05
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	1e-04
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	1e-04
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	2e-04
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	2e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	2e-04
PHA02988	283	PHA02988, PHA02988, hypothetical protein; Provisio	2e-04
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	2e-04
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	2e-04
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	4e-04
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	5e-04
COG4487	438	COG4487, COG4487, Uncharacterized protein conserve	5e-04
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	6e-04
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	7e-04
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	7e-04
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	8e-04
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	0.001
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	0.001
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	0.001
cd05087	269	cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of t	0.002
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	0.002
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	0.004
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score =  109 bits (276), Expect = 6e-27
 Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 14/145 (9%)

Query: 353 VYRGRLNHAS-----VAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCSELK- 403
           VY+G+L         VA+KTL    SE   +DF  +   +  + HP++V ++G C+E + 
Sbjct: 11  VYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEP 70

Query: 404 -CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             +V EYM  G+L D L    R          L   D +  A ++  G+ +L S   +  
Sbjct: 71  LYLVLEYMEGGDLLDYL-RKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLAS---KKF 126

Query: 463 VHGSLTPSSILLDRNLVAKISGLGL 487
           VH  L   + L+  +LV KIS  GL
Sbjct: 127 VHRDLAARNCLVGEDLVVKISDFGL 151

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score =  107 bits (271), Expect = 3e-26
 Identities = 50/152 (32%), Positives = 74/152 (48%), Gaps = 23/152 (15%)

Query: 347 AGDWTNVYRGRLNHAS------VAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMG 397
            G +  VY+G L          VA+KTL  G SE   E+F  + S +  + HP++V ++G
Sbjct: 9   EGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPNIVRLLG 68

Query: 398 CCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLH 455
            C++ +   IV EYMP G+L D L    R          L   D + +A ++  G+ +L 
Sbjct: 69  VCTQGEPLYIVTEYMPGGDLLDFL----RK-----HGEKLTLKDLLQMALQIAKGMEYLE 119

Query: 456 STEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
           S   +  VH  L   + L+  NLV KIS  GL
Sbjct: 120 S---KNFVHRDLAARNCLVTENLVVKISDFGL 148

Length = 258

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 96.1 bits (240), Expect = 4e-22
 Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 22/146 (15%)

Query: 353 VYRGRLNHAS------VAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           VY+G L          VA+KTL    SE   E+F  +   +  + HP++V ++G C+E +
Sbjct: 15  VYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEE 74

Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              IV EYMP G+L D L    R  +     + L   D +  A ++  G+ +L S   + 
Sbjct: 75  PLMIVMEYMPGGDLLDYL----RKNRP----KELSLSDLLSFALQIARGMEYLES---KN 123

Query: 462 IVHGSLTPSSILLDRNLVAKISGLGL 487
            +H  L   + L+  NLV KIS  GL
Sbjct: 124 FIHRDLAARNCLVGENLVVKISDFGL 149

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 96.1 bits (240), Expect = 4e-22
 Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 23/146 (15%)

Query: 353 VYRGRLNHAS------VAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCC--SE 401
           VY+G+L          VA+KTL    SE   E+F  +   +  + HP++V ++G C   E
Sbjct: 15  VYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNVVKLLGVCTEEE 74

Query: 402 LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              IV EYM  G+L   L    R  +       L   D +  A ++  G+ +L S   + 
Sbjct: 75  PLYIVMEYMEGGDLLSYL----RKNRP-----KLSLSDLLSFALQIARGMEYLES---KN 122

Query: 462 IVHGSLTPSSILLDRNLVAKISGLGL 487
            +H  L   + L+  NLV KIS  GL
Sbjct: 123 FIHRDLAARNCLVGENLVVKISDFGL 148

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain

 Score = 88.8 bits (221), Expect = 9e-22
 Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 612 FICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLI 671
           F+CPI  EVMK P +   G +YE  A+E+WL + H T P+T   L H+ L PN  L+S I
Sbjct: 2   FLCPISLEVMKDPVILPSGQTYERSAIEKWL-LSHGTDPVTGQPLTHEDLIPNLALKSAI 60

Query: 672 QEW 674
           QEW
Sbjct: 61  QEW 63

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 88.8 bits (221), Expect = 5e-20
 Identities = 42/161 (26%), Positives = 65/161 (40%), Gaps = 20/161 (12%)

Query: 353 VYRGR--LNHASVAIKTLNNGLSEEDFQAK---VSFLTAVRHPHLVAVMGCCSELK--CI 405
           VY  R       VAIK +    S    +     +  L  + HP++V + G   +     +
Sbjct: 9   VYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYL 68

Query: 406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHG 465
           V EY   G+L+D L   + N    S        + + I  ++  GL +LHS     I+H 
Sbjct: 69  VMEYCEGGSLKDLL---KENEGKLS------EDEILRILLQILEGLEYLHS---NGIIHR 116

Query: 466 SLTPSSILLD-RNLVAKISGLGLNICDQLNVRSDIRAFGTL 505
            L P +ILLD  N   K++  GL+     +        GT 
Sbjct: 117 DLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTP 157

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 77.5 bits (191), Expect = 1e-15
 Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 21/158 (13%)

Query: 348 GDWTNVYRG-------RLNHASVAIKTL---NNGLSEEDFQAKVSFLTAVRHPHLVAVMG 397
           G +  VY+G       RL+  SVAIKTL        +++F+ +   ++ ++HP++V ++G
Sbjct: 16  GAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLG 75

Query: 398 CC--SELKCIVFEYMPNGNLRDKLFTSQRN------YKNCSRARALRWLDRIHIAHEVCL 449
            C   +  C++FEY+ +G+L + L  +  +        + +   +L   D +HIA ++  
Sbjct: 76  VCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAA 135

Query: 450 GLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
           G+ +L S      VH  L   + L+   L  KIS  GL
Sbjct: 136 GMEYLSS---HHFVHRDLAARNCLVGEGLTVKISDFGL 170

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 74.7 bits (184), Expect = 7e-15
 Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 16/145 (11%)

Query: 347 AGDWTNVYRGRLNHASVAIKTL-NNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK-- 403
            G++ +V  G      VA+K L ++  + + F A+ S +T +RHP+LV ++G   +    
Sbjct: 16  KGEFGDVMLGDYRGQKVAVKCLKDDSTAAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPL 75

Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWL-DRIHIAHEVCLGLSFLHSTEPRPI 462
            IV EYM  G+L D L    R     SR RA+  L  ++  A +VC G+ +L   E +  
Sbjct: 76  YIVTEYMAKGSLVDYL----R-----SRGRAVITLAQQLGFALDVCEGMEYL---EEKNF 123

Query: 463 VHGSLTPSSILLDRNLVAKISGLGL 487
           VH  L   ++L+  +LVAK+S  GL
Sbjct: 124 VHRDLAARNVLVSEDLVAKVSDFGL 148

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 74.5 bits (184), Expect = 8e-15
 Identities = 45/192 (23%), Positives = 69/192 (35%), Gaps = 44/192 (22%)

Query: 353 VYRGR--LNHASVAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCSELK--CI 405
           VY  R       VAIK +     +   E    ++  L  ++HP++V +     +     +
Sbjct: 15  VYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIVRLYDVFEDEDKLYL 74

Query: 406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHG 465
           V EY   G+L D L    +     S   A           ++   L +LHS   + IVH 
Sbjct: 75  VMEYCEGGDLFDLL----KKRGRLSEDEA------RFYLRQILSALEYLHS---KGIVHR 121

Query: 466 SLTPSSILLDRNLVAKISGLGL-----------NIC-------------DQLNVRSDIRA 501
            L P +ILLD +   K++  GL                                  DI +
Sbjct: 122 DLKPENILLDEDGHVKLADFGLARQLDPGEKLTTFVGTPEYMAPEVLLGKGYGKAVDIWS 181

Query: 502 FGTLLLHLLTGR 513
            G +L  LLTG+
Sbjct: 182 LGVILYELLTGK 193

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 64/256 (25%), Positives = 110/256 (42%), Gaps = 48/256 (18%)

Query: 340 ERFRLK---CAGDWTNVYRGR-LNHASVAIKTL--NNGLSEEDFQAKVSFLTAVRHPHLV 393
           E F L+    +G +  V+ G   N   VAIK L  ++ L ++DFQ +V  L  +RH HL+
Sbjct: 6   EEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLI 65

Query: 394 AVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGL 451
           ++   CS  +   I+ E M  G+L   L + +         + L     I +A +V  G+
Sbjct: 66  SLFAVCSVGEPVYIITELMEKGSLLAFLRSPE--------GQVLPVASLIDMACQVAEGM 117

Query: 452 SFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN--ICDQL---------------- 493
           ++L   E +  +H  L   +IL+  +LV K++  GL   I + +                
Sbjct: 118 AYL---EEQNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLSSDKKIPYKWTAPE 174

Query: 494 -------NVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLA 546
                  + +SD+ +FG LL  + T     G V      +     Q+  G     P    
Sbjct: 175 AASHGTFSTKSDVWSFGILLYEMFT----YGQVPYPGMNNHEVYDQITAGYRMPCPAKCP 230

Query: 547 EELAGIALKCLSADQD 562
           +E+  I L+C +A+ +
Sbjct: 231 QEIYKIMLECWAAEPE 246

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 73.4 bits (181), Expect = 2e-14
 Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 21/143 (14%)

Query: 353 VYRGRLNHAS--VAIKTLNN-GLSEEDFQAK---VSFLTAVRHPHLVAVMGCCSELK--C 404
           VY+ +       VA+K L       +  Q     +  L  + HP++V ++    +     
Sbjct: 15  VYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNIVRLIDAFEDKDHLY 74

Query: 405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVH 464
           +V EY   G+L D L          SR   L   +   IA ++  GL +LHS     I+H
Sbjct: 75  LVMEYCEGGDLFDYL----------SRGGPLSEDEAKKIALQILRGLEYLHS---NGIIH 121

Query: 465 GSLTPSSILLDRNLVAKISGLGL 487
             L P +ILLD N V KI+  GL
Sbjct: 122 RDLKPENILLDENGVVKIADFGL 144

Length = 260

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 72.0 bits (177), Expect = 6e-14
 Identities = 54/194 (27%), Positives = 84/194 (43%), Gaps = 44/194 (22%)

Query: 350 WTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIV 406
           W   + G      VA+KTL  G +S E F  +   +  +RH  LV +   CSE +   IV
Sbjct: 23  WMGTWNG---TTKVAVKTLKPGTMSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIV 79

Query: 407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGS 466
            EYM  G+L D L + +         + LR    + +A ++  G+++L   E R  +H  
Sbjct: 80  TEYMSKGSLLDFLKSGE--------GKKLRLPQLVDMAAQIAEGMAYL---ESRNYIHRD 128

Query: 467 LTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNVRSDIR 500
           L   +IL+  NLV KI+  GL                              +  ++SD+ 
Sbjct: 129 LAARNILVGENLVCKIADFGLARLIEDDEYTAREGAKFPIKWTAPEAANYGRFTIKSDVW 188

Query: 501 AFGTLLLHLLT-GR 513
           +FG LL  ++T GR
Sbjct: 189 SFGILLTEIVTYGR 202

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|203049 pfam04564, U-box, U-box domain

 Score = 61.9 bits (151), Expect = 3e-12
 Identities = 23/67 (34%), Positives = 31/67 (46%)

Query: 608 VPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTL 667
           +P  F+ PI  E+MK P +   G +Y+   +E  L     T P T   L H  L PN  L
Sbjct: 1   IPDEFLDPITLELMKDPVILPSGITYDRSTIERHLLSVDPTDPFTREPLTHDQLIPNLEL 60

Query: 668 RSLIQEW 674
           +  I  W
Sbjct: 61  KEKIDAW 67

This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 66.5 bits (162), Expect = 4e-12
 Identities = 50/162 (30%), Positives = 77/162 (47%), Gaps = 22/162 (13%)

Query: 329 EDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSFLTAV 387
            ++ L  E  S +F L   G W       L    VAIKT+  G +SEEDF  +   +  +
Sbjct: 4   SELTLVQEIGSGQFGLVWLGYW-------LEKRKVAIKTIREGAMSEEDFIEEAQVMMKL 56

Query: 388 RHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAH 445
            HP LV + G C+E    C+VFE+M +G L D L    R  +       L     + +  
Sbjct: 57  SHPKLVQLYGVCTERSPICLVFEFMEHGCLSDYL----RAQRGKFSQETL-----LGMCL 107

Query: 446 EVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
           +VC G+++L S+    ++H  L   + L+  N V K+S  G+
Sbjct: 108 DVCEGMAYLESSN---VIHRDLAARNCLVGENQVVKVSDFGM 146

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 66.7 bits (163), Expect = 5e-12
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 25/153 (16%)

Query: 348 GDWTNVYRGRLNH------ASVAIKTLN---NGLSEEDFQAKVSFLTAVRHPHLVAVMGC 398
           G +  V   R +         VA+K+LN         DF+ ++  L  + H ++V   G 
Sbjct: 15  GHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGV 74

Query: 399 CSELK----CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFL 454
           C +       ++ EY+P+G+LRD L   QR+    +  R L +      + ++C G+ +L
Sbjct: 75  CEKPGGRSLRLIMEYLPSGSLRDYL---QRHRDQINLKRLLLF------SSQICKGMDYL 125

Query: 455 HSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
            S   +  +H  L   +IL++   + KIS  GL
Sbjct: 126 GS---QRYIHRDLAARNILVESEDLVKISDFGL 155

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 67/248 (27%), Positives = 109/248 (43%), Gaps = 49/248 (19%)

Query: 347 AGDWTNVYRGRLNHA-SVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCS--EL 402
           AG +  V+ G  N+   VA+KTL  G +  +DF A+   +  +RHP L+ +   C+  E 
Sbjct: 16  AGQFGEVWEGLWNNTTPVAVKTLKPGTMDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEP 75

Query: 403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             IV E M  G+L + L   Q         RAL+    I +A +V  G+++L   E +  
Sbjct: 76  IYIVTELMKYGSLLEYL---QGG-----AGRALKLPQLIDMAAQVASGMAYL---EAQNY 124

Query: 463 VHGSLTPSSILLDRNLVAKISGLGL------NI--------------------CDQLNVR 496
           +H  L   ++L+  N + K++  GL      +I                     ++ +++
Sbjct: 125 IHRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAALYNRFSIK 184

Query: 497 SDIRAFGTLLLHLLT-GR-NWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIAL 554
           SD+ +FG LL  ++T GR  + G+    +      L QV  G     P    +EL  I L
Sbjct: 185 SDVWSFGILLTEIVTYGRMPYPGMTNAEV------LQQVDQGYRMPCPPGCPKELYDIML 238

Query: 555 KCLSADQD 562
            C   D D
Sbjct: 239 DCWKEDPD 246

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 16/139 (11%)

Query: 353 VYRGR-LNHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFE 408
           V+ G+      VAIK +  G +SE+DF  +   +  + HP+LV + G C++ +   IV E
Sbjct: 20  VHLGKWRGKIDVAIKMIREGAMSEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTE 79

Query: 409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLT 468
           YM NG L + L    R  K       L     + +  +VC  + +L   E    +H  L 
Sbjct: 80  YMANGCLLNYL----RERKGKLGTEWL-----LDMCSDVCEAMEYL---ESNGFIHRDLA 127

Query: 469 PSSILLDRNLVAKISGLGL 487
             + L+  + V K+S  GL
Sbjct: 128 ARNCLVGEDNVVKVSDFGL 146

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 62.3 bits (151), Expect = 1e-10
 Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 21/154 (13%)

Query: 353 VYRGRL-----NHAS-VAIKTL---NNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           +Y+G L     +HA  VAIKTL   NN     +FQ + S +  + HP++V ++G  ++ +
Sbjct: 21  IYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQ 80

Query: 404 --CIVFEYMPNGNLRDKLFT-SQRNYKNCSR------ARALRWLDRIHIAHEVCLGLSFL 454
             C++FEY+  G+L + L   S  +   CS         +L   D +HIA ++  G+ +L
Sbjct: 81  PVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYL 140

Query: 455 HSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
            S      VH  L   +IL+   L  KIS LGL+
Sbjct: 141 SS---HFFVHKDLAARNILIGEQLHVKISDLGLS 171

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 19/151 (12%)

Query: 353 VYRGRLNHAS-------VAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSEL 402
           V+ G   H         VA+KTL    S    +DF+ +   LT  +H ++V   G C+E 
Sbjct: 21  VFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEG 80

Query: 403 K--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARA----LRWLDRIHIAHEVCLGLSFLHS 456
               +VFEYM +G+L   L +   +        +    L     + IA ++  G+ +L S
Sbjct: 81  DPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLAS 140

Query: 457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
                 VH  L   + L+  +LV KI   G+
Sbjct: 141 QH---FVHRDLATRNCLVGYDLVVKIGDFGM 168

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 61.2 bits (148), Expect = 3e-10
 Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 16/144 (11%)

Query: 348 GDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELKC--- 404
           G++ +V  G      VA+K + N  + + F A+ S +T +RH +LV ++G   E K    
Sbjct: 17  GEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLY 76

Query: 405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDR-IHIAHEVCLGLSFLHSTEPRPIV 463
           IV EYM  G+L D L          SR R++   D  +  + +VC  + +L   E    V
Sbjct: 77  IVTEYMAKGSLVDYLR---------SRGRSVLGGDCLLKFSLDVCEAMEYL---EANNFV 124

Query: 464 HGSLTPSSILLDRNLVAKISGLGL 487
           H  L   ++L+  + VAK+S  GL
Sbjct: 125 HRDLAARNVLVSEDNVAKVSDFGL 148

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 22/151 (14%)

Query: 347 AGDWTNVYRGRLNHAS-----VAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGC 398
            G++  V RGRL         VAIKTL  G S++   DF  + S +    HP+++ + G 
Sbjct: 14  GGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGV 73

Query: 399 CSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
            ++ +   I+ EYM NG+L DK                      + +   +  G+ +L  
Sbjct: 74  VTKSRPVMIITEYMENGSL-DKFLRENDGK--------FTVGQLVGMLRGIASGMKYLSE 124

Query: 457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
                 VH  L   +IL++ NLV K+S  GL
Sbjct: 125 ---MNYVHRDLAARNILVNSNLVCKVSDFGL 152

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 60.5 bits (145), Expect = 1e-09
 Identities = 51/209 (24%), Positives = 77/209 (36%), Gaps = 54/209 (25%)

Query: 348 GDWTNVYRGRLNHASVAIKTLNNGLS-----EEDFQAKVSFLTAVRHP-HLVAVMGCC-- 399
           G +  VY  R +   VA+K L   L       E F  ++  L ++ HP ++V +      
Sbjct: 11  GSFGEVYLAR-DRKLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQD 69

Query: 400 SELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEP 459
                +V EY+  G+L D L       K   R   L   + + I  ++   L +LHS   
Sbjct: 70  EGSLYLVMEYVDGGSLEDLL-------KKIGRKGPLSESEALFILAQILSALEYLHS--- 119

Query: 460 RPIVHGSLTPSSILLDRNL-VAKISGLGL------------------------------- 487
           + I+H  + P +ILLDR+  V K+   GL                               
Sbjct: 120 KGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEV 179

Query: 488 ---NICDQLNVRSDIRAFGTLLLHLLTGR 513
                    +  SDI + G  L  LLTG 
Sbjct: 180 LLGLSLAYASSSSDIWSLGITLYELLTGL 208

Length = 384

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 59.5 bits (145), Expect = 1e-09
 Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 23/145 (15%)

Query: 353 VYRGRLNH--ASVAIKTLN-NGLSEEDFQA---KVSFLTAVRHPHLVAVMGCC-SELK-- 403
           VY          +A+K++  +G SEE+ +A   ++  L++++HP++V   G    E K  
Sbjct: 16  VYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNT 75

Query: 404 -CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             I  EY+  G+L   L    + +         ++        ++  GL++LHS     I
Sbjct: 76  LNIFLEYVSGGSLSSLL----KKFGKLPEPVIRKY------TRQILEGLAYLHS---NGI 122

Query: 463 VHGSLTPSSILLDRNLVAKISGLGL 487
           VH  +  ++IL+D + V K++  G 
Sbjct: 123 VHRDIKGANILVDSDGVVKLADFGC 147

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 58.8 bits (142), Expect = 2e-09
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 21/132 (15%)

Query: 363 VAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE----LKCIVFEYMPNGNL 415
           VA+KTL           ++ +++ L  + H ++V   GCCSE       ++ EY+P G+L
Sbjct: 36  VAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLIMEYVPLGSL 95

Query: 416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD 475
           RD L    ++  N ++         +  A ++C G+++LHS   +  +H  L   ++LLD
Sbjct: 96  RDYL---PKHKLNLAQL--------LLFAQQICEGMAYLHS---QHYIHRDLAARNVLLD 141

Query: 476 RNLVAKISGLGL 487
            + + KI   GL
Sbjct: 142 NDRLVKIGDFGL 153

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 9/132 (6%)

Query: 363 VAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRD 417
           VA+K L    S+   EDF  +V  L+ +  P++  ++G C+     C++ EYM NG+L  
Sbjct: 49  VAVKVLRPDASDNAREDFLKEVKILSRLSDPNIARLLGVCTVDPPLCMIMEYMENGDLNQ 108

Query: 418 KLFTSQ-RNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR 476
            L             +++L +   +++A ++  G+ +L S      VH  L   + L+ +
Sbjct: 109 FLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLES---LNFVHRDLATRNCLVGK 165

Query: 477 NLVAKISGLGLN 488
           N   KI+  G++
Sbjct: 166 NYTIKIADFGMS 177

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 58.3 bits (141), Expect = 3e-09
 Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 22/144 (15%)

Query: 363 VAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRD 417
           VA+K L    S +   DFQ + + +    HP++V ++G C+  K  C++FEYM  G+L +
Sbjct: 38  VAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKPMCLLFEYMAYGDLNE 97

Query: 418 KLFTSQRNYKNCSRAR-------------ALRWLDRIHIAHEVCLGLSFLHSTEPRPIVH 464
            L   +     CS +               L   +++ IA +V  G+++L     R  VH
Sbjct: 98  FL-RHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSE---RKFVH 153

Query: 465 GSLTPSSILLDRNLVAKISGLGLN 488
             L   + L+  N+V KI+  GL+
Sbjct: 154 RDLATRNCLVGENMVVKIADFGLS 177

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 57.9 bits (140), Expect = 4e-09
 Identities = 45/195 (23%), Positives = 87/195 (44%), Gaps = 42/195 (21%)

Query: 348 GDWTNVYRG--RLNHASVAIKTLN-NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK- 403
           G +  VY G  +    +VA+KTL  + +  E+F  + + +  ++HP+LV ++G C+    
Sbjct: 17  GQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP 76

Query: 404 -CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             I+ E+M  GNL D L   +   +    A  L     +++A ++   + +L   E +  
Sbjct: 77  FYIITEFMTYGNLLDYL---RECNRQEVNAVVL-----LYMATQISSAMEYL---EKKNF 125

Query: 463 VHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNVR 496
           +H  L   + L+  N + K++  GL+                            ++ +++
Sbjct: 126 IHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIK 185

Query: 497 SDIRAFGTLLLHLLT 511
           SD+ AFG LL  + T
Sbjct: 186 SDVWAFGVLLWEIAT 200

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 57.7 bits (139), Expect = 4e-09
 Identities = 65/244 (26%), Positives = 102/244 (41%), Gaps = 44/244 (18%)

Query: 348 GDWTNVYRGRLN-HASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELKC- 404
           G +  V+ G  N +  VA+KTL  G +S E F  +   +  +RH  LV +    SE    
Sbjct: 17  GQFGEVWMGTWNGNTKVAVKTLKPGTMSPESFLEEAQIMKKLRHDKLVQLYAVVSEEPIY 76

Query: 405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVH 464
           IV EYM  G+L D L   +         RAL+  + + +A +V  G++++   E    +H
Sbjct: 77  IVTEYMSKGSLLDFLKDGE--------GRALKLPNLVDMAAQVAAGMAYI---ERMNYIH 125

Query: 465 GSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNVRSD 498
             L  ++IL+   LV KI+  GL                           +  +  ++SD
Sbjct: 126 RDLRSANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSD 185

Query: 499 IRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLS 558
           + +FG LL  L+T     G V      ++  L QV  G     P D    L  + L+C  
Sbjct: 186 VWSFGILLTELVT----KGRVPYPGMNNREVLEQVERGYRMPCPQDCPISLHELMLQCWK 241

Query: 559 ADQD 562
            D +
Sbjct: 242 KDPE 245

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 56.8 bits (137), Expect = 8e-09
 Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 22/163 (13%)

Query: 329 EDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSFLTAV 387
           +D+    E  + +F +   G W    RG+ +   VAIK +  G +SE++F  +   +  +
Sbjct: 4   KDLTFLKELGTGQFGVVKYGKW----RGQYD---VAIKMIKEGSMSEDEFIEEAKVMMKL 56

Query: 388 RHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAH 445
            H  LV + G C++ +   IV EYM NG L + L    + ++             + +  
Sbjct: 57  SHEKLVQLYGVCTKQRPIYIVTEYMSNGCLLNYLREHGKRFQP---------SQLLEMCK 107

Query: 446 EVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
           +VC G+++L S +    +H  L   + L+D     K+S  GL+
Sbjct: 108 DVCEGMAYLESKQ---FIHRDLAARNCLVDDQGCVKVSDFGLS 147

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 56.6 bits (136), Expect = 9e-09
 Identities = 67/249 (26%), Positives = 102/249 (40%), Gaps = 47/249 (18%)

Query: 340 ERFRLKCA---GDWTNVYRGRLNHAS-VAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVA 394
           E  RL+     G +  V+ G  N  + VAIKTL  G +S E F  +   +  +RH  LV 
Sbjct: 6   ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQ 65

Query: 395 VMGCCSELKC-IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSF 453
           +    SE    IV EYM  G+L D L      Y        LR    + +A ++  G+++
Sbjct: 66  LYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKY--------LRLPQLVDMAAQIASGMAY 117

Query: 454 LHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN------------------------- 488
           +   E    VH  L  ++IL+  NLV K++  GL                          
Sbjct: 118 V---ERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEA 174

Query: 489 -ICDQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAE 547
            +  +  ++SD+ +FG LL  L T     G V     +++  L QV  G     P +  E
Sbjct: 175 ALYGRFTIKSDVWSFGILLTELTT----KGRVPYPGMVNREVLDQVERGYRMPCPPECPE 230

Query: 548 ELAGIALKC 556
            L  +  +C
Sbjct: 231 SLHDLMCQC 239

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 52/193 (26%), Positives = 85/193 (44%), Gaps = 43/193 (22%)

Query: 350 WTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCS-ELKCIVF 407
           W   Y     H  VAIK+L  G +S E F A+ + +  ++HP LV +    + E   I+ 
Sbjct: 23  WMGYYN---GHTKVAIKSLKQGSMSPEAFLAEANLMKQLQHPRLVRLYAVVTQEPIYIIT 79

Query: 408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSL 467
           EYM NG+L D L T +      ++         I +A ++  G++F+   E +  +H  L
Sbjct: 80  EYMENGSLVDFLKTPEGIKLTINKL--------IDMAAQIAEGMAFI---ERKNYIHRDL 128

Query: 468 TPSSILLDRNLVAKISGLGLNICDQLN--------------------------VRSDIRA 501
             ++IL+   L  KI+  GL    + N                          ++SD+ +
Sbjct: 129 RAANILVSETLCCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWS 188

Query: 502 FGTLLLHLLT-GR 513
           FG LL  ++T GR
Sbjct: 189 FGILLTEIVTYGR 201

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 20/158 (12%)

Query: 340 ERFRLKCA---GDWTNVYRGRLNHAS------VAIKTLNNGLSEED---FQAKVSFLTAV 387
           +R  L      G +  ++ G L          V +KT+ +  SE        +   L  +
Sbjct: 6   DRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGL 65

Query: 388 RHPHLVAVMGCCSELK---CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIA 444
            H +++ ++  C E      +++ YM  GNL  KLF  Q      +  +AL     +H+A
Sbjct: 66  SHQNILPILHVCIEDGEPPFVLYPYMNWGNL--KLFLQQCRLGEANNPQALSTQQLVHMA 123

Query: 445 HEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKI 482
            ++  G+S+LH      ++H  +   + ++D  L  KI
Sbjct: 124 IQIACGMSYLHKRG---VIHKDIAARNCVIDEELQVKI 158

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 15/131 (11%)

Query: 360 HASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLR 416
              VAIK +N G +SEEDF  +   +  + HP LV + G C++ K   IV E+M NG L 
Sbjct: 28  QIKVAIKAINEGAMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMENGCLL 87

Query: 417 DKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR 476
           + L   ++     S+   L       +  +VC G+ +L   E    +H  L   + L+  
Sbjct: 88  NYL---RQRQGKLSKDMLLS------MCQDVCEGMEYL---ERNSFIHRDLAARNCLVSS 135

Query: 477 NLVAKISGLGL 487
             V K+S  G+
Sbjct: 136 TGVVKVSDFGM 146

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 14/142 (9%)

Query: 348 GDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELKC-IV 406
           G++  V +G      VA+K +   ++ + F  + + +T + H +LV ++G        IV
Sbjct: 17  GEFGAVLQGEYTGQKVAVKNIKCDVTAQAFLEETAVMTKLHHKNLVRLLGVILHNGLYIV 76

Query: 407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDR-IHIAHEVCLGLSFLHSTEPRPIVHG 465
            E M  GNL + L T         R RAL  + + +  + +V  G+ +L   E + +VH 
Sbjct: 77  MELMSKGNLVNFLRT---------RGRALVSVIQLLQFSLDVAEGMEYL---ESKKLVHR 124

Query: 466 SLTPSSILLDRNLVAKISGLGL 487
            L   +IL+  + VAK+S  GL
Sbjct: 125 DLAARNILVSEDGVAKVSDFGL 146

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 31/135 (22%), Positives = 68/135 (50%), Gaps = 14/135 (10%)

Query: 363 VAIKTLN---NGLSEEDFQAKVSFLTAVRHPHLVAVMGCC--SELKCIVFEYMPNGNLRD 417
           VA+K L       +  DF  ++  ++ +++P+++ ++G C   +  C++ EYM NG+L  
Sbjct: 47  VAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLGVCVSDDPLCMITEYMENGDL-- 104

Query: 418 KLFTSQR----NYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSIL 473
             F SQR     + + +   ++   + +++A ++  G+ +L S      VH  L   + L
Sbjct: 105 NQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLN---FVHRDLATRNCL 161

Query: 474 LDRNLVAKISGLGLN 488
           +  +   KI+  G++
Sbjct: 162 VGNHYTIKIADFGMS 176

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 22/152 (14%)

Query: 347 AGDWTNVYRGRLNHAS-----VAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGC 398
           AG++  V RGRL         VAIKTL +G +E+   DF ++ S +    HP+++ + G 
Sbjct: 14  AGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGV 73

Query: 399 CSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
            ++ +   I+ E+M NG L   L  +   +        LR          +  G+ +L  
Sbjct: 74  VTKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLR---------GIAAGMKYLSE 124

Query: 457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
                 VH  L   +IL++ NLV K+S  GL+
Sbjct: 125 MN---YVHRDLAARNILVNSNLVCKVSDFGLS 153

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 54.4 bits (132), Expect = 4e-08
 Identities = 49/196 (25%), Positives = 78/196 (39%), Gaps = 46/196 (23%)

Query: 363 VAIKTLN-NGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLR 416
             +K ++ + +SE   ED   +V  L  + HP+++       E    CIV EY   G+L 
Sbjct: 28  YVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEYADGGDLS 87

Query: 417 DKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR 476
            K+   ++  K     + L W  ++      CL L +LHS   R I+H  + P +I L  
Sbjct: 88  QKIKKQKKEGKPFPEEQILDWFVQL------CLALKYLHS---RKILHRDIKPQNIFLTS 138

Query: 477 NLVAKISGLGLN-----------------------IC--DQLNVRSDIRAFGTLLLHLLT 511
           N + K+   G++                       +C     N +SDI + G +L  L T
Sbjct: 139 NGLVKLGDFGISKVLSSTVDLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCT 198

Query: 512 ------GRNWAGLVEK 521
                 G N   L  K
Sbjct: 199 LKHPFEGENLLELALK 214

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 54.0 bits (130), Expect = 6e-08
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 18/146 (12%)

Query: 348 GDWTNVYRGRLN-HASVAIKTLNNGLSEED---FQAKVSFLTAVRHPHLVAVMGCCSELK 403
           G++ +VY+G L  +  VA+KT  + L  +    F  +   L    HP++V ++G C + +
Sbjct: 6   GNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQ 65

Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              IV E +P G+L   L    R  KN    + L     + ++ +   G+ +L   E + 
Sbjct: 66  PIYIVMELVPGGSLLTFL----RKKKNRLTVKKL-----LQMSLDAAAGMEYL---ESKN 113

Query: 462 IVHGSLTPSSILLDRNLVAKISGLGL 487
            +H  L   + L+  N V KIS  G+
Sbjct: 114 CIHRDLAARNCLVGENNVLKISDFGM 139

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 54.2 bits (130), Expect = 7e-08
 Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 12/135 (8%)

Query: 363 VAIKTLN--NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRDK 418
           VA+K L   +  + +DFQ +   LT ++H H+V   G C+E     +VFEYM +G+L   
Sbjct: 38  VAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLLMVFEYMRHGDLNRF 97

Query: 419 LFTSQRNYKNCSRARA-----LRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSIL 473
           L +   + K  +         L     + IA ++  G+ +L S      VH  L   + L
Sbjct: 98  LRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLH---FVHRDLATRNCL 154

Query: 474 LDRNLVAKISGLGLN 488
           + + LV KI   G++
Sbjct: 155 VGQGLVVKIGDFGMS 169

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 53.5 bits (128), Expect = 9e-08
 Identities = 67/267 (25%), Positives = 102/267 (38%), Gaps = 54/267 (20%)

Query: 324 REYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVS 382
           RE    D++L    F E         W   + G      VAIKTL  G +  E F  +  
Sbjct: 5   RESLRLDVKLGQGCFGEV--------WMGTWNGT---TKVAIKTLKPGTMMPEAFLQEAQ 53

Query: 383 FLTAVRHPHLVAVMGCCSELKC-IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRI 441
            +  +RH  LV +    SE    IV E+M  G+L D L      Y        L+    +
Sbjct: 54  IMKKLRHDKLVPLYAVVSEEPIYIVTEFMGKGSLLDFLKEGDGKY--------LKLPQLV 105

Query: 442 HIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN------------- 488
            +A ++  G++++   E    +H  L  ++IL+  NLV KI+  GL              
Sbjct: 106 DMAAQIADGMAYI---ERMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTARQG 162

Query: 489 -------------ICDQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLD 535
                        +  +  ++SD+ +FG LL  L+T     G V     +++  L QV  
Sbjct: 163 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVT----KGRVPYPGMVNREVLEQVER 218

Query: 536 GNAGIWPLDLAEELAGIALKCLSADQD 562
           G     P    E L  +   C   D D
Sbjct: 219 GYRMPCPQGCPESLHELMKLCWKKDPD 245

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 53.8 bits (129), Expect = 1e-07
 Identities = 65/274 (23%), Positives = 114/274 (41%), Gaps = 61/274 (22%)

Query: 355 RGRLNHASVAIKTLNNGLSEEDFQAKVS---FLTAVRHPHLVAVMGCCS--ELKCIVFEY 409
           +GR  + +VA+K L    S  + +  +S    L  V HPH++ + G CS      ++ EY
Sbjct: 25  KGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLLIVEY 84

Query: 410 MPNGNLRDKLFTSQR--------------NYKNCSRARALRWLDRIHIAHEVCLGLSFLH 455
              G+LR  L  S++              +Y +    RAL   D I  A ++  G+ +L 
Sbjct: 85  AKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLA 144

Query: 456 STEPRPIVHGSLTPSSILLDRNLVAKISGLGL--------------------------NI 489
             +   +VH  L   ++L+      KIS  GL                          ++
Sbjct: 145 EMK---LVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESL 201

Query: 490 CDQL-NVRSDIRAFGTLLLHLLT--GRNWAGLV-EKAMALDQTTLMQVLDGNAGIWPLDL 545
            D +   +SD+ +FG LL  ++T  G  + G+  E+   L +T       G     P + 
Sbjct: 202 FDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPERLFNLLKT-------GYRMERPENC 254

Query: 546 AEELAGIALKCLSADQDANRDLRIAGVMKELDEV 579
           +EE+  + L C    Q+ ++    A + KEL+++
Sbjct: 255 SEEMYNLMLTCWK--QEPDKRPTFADISKELEKM 286

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 20/138 (14%)

Query: 363 VAIKTLNNGL--SEEDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLR-- 416
           VA+KTL +    + +DF  +   LT ++H H+V   G C E     +VFEYM +G+L   
Sbjct: 38  VAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKF 97

Query: 417 ------DKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPS 470
                 D +  ++ N         L     +HIA ++  G+ +L S      VH  L   
Sbjct: 98  LRAHGPDAVLMAEGNRPA-----ELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATR 149

Query: 471 SILLDRNLVAKISGLGLN 488
           + L+  NL+ KI   G++
Sbjct: 150 NCLVGENLLVKIGDFGMS 167

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 42/199 (21%), Positives = 75/199 (37%), Gaps = 54/199 (27%)

Query: 352 NVYRG--RLNHASVAIKTLNNGLSEEDFQ----AKVSFLTAVRHPHLVAVMG--CCSELK 403
            VY+   +      A+K ++    +E+F+     ++  L +   P++V   G        
Sbjct: 16  VVYKVRHKPTGKIYALKKIH-VDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEI 74

Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRI--HIAHEVCLGLSFLHSTEPRP 461
            IV EYM  G+L D L             +  +  + +  +IA ++  GL +LH+   R 
Sbjct: 75  SIVLEYMDGGSLADLL------------KKVGKIPEPVLAYIARQILKGLDYLHTK--RH 120

Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVR------------------------- 496
           I+H  + PS++L++     KI+  G  I   L                            
Sbjct: 121 IIHRDIKPSNLLINSKGEVKIADFG--ISKVLENTLDQCNTFVGTVTYMSPERIQGESYS 178

Query: 497 --SDIRAFGTLLLHLLTGR 513
             +DI + G  LL    G+
Sbjct: 179 YAADIWSLGLTLLECALGK 197

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 22/152 (14%)

Query: 347 AGDWTNVYRGRL-----NHASVAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGC 398
           AG++  V+RG L        +VAIKTL  G +E+   DF ++ S +    H +++ + G 
Sbjct: 15  AGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGV 74

Query: 399 CSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
            ++ K   I+ EYM NG L   L      + +      LR          +  G+ +L  
Sbjct: 75  VTKFKPAMIITEYMENGALDKYLRDHDGEFSSYQLVGMLR---------GIAAGMKYLSD 125

Query: 457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
                 VH  L   +IL++ NL  K+S  GL+
Sbjct: 126 MN---YVHRDLAARNILVNSNLECKVSDFGLS 154

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 52.1 bits (126), Expect = 3e-07
 Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 21/143 (14%)

Query: 353 VYRGR--LNHASVAIKTLNNGLSEEDFQA----KVSFLTAVRHPHLVAVMG-CCSELKC- 404
           VY+ R       VA+K +     EE   +    ++S L  ++HP++V ++    +E K  
Sbjct: 15  VYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLY 74

Query: 405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVH 464
           +VFEY    +L+  L              +   +    I +++  GL++ HS     I+H
Sbjct: 75  LVFEYCDM-DLKKYL-------DKRPGPLSPNLIK--SIMYQLLRGLAYCHS---HRILH 121

Query: 465 GSLTPSSILLDRNLVAKISGLGL 487
             L P +IL++R+ V K++  GL
Sbjct: 122 RDLKPQNILINRDGVLKLADFGL 144

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 22/152 (14%)

Query: 347 AGDWTNVYRGRLN-----HASVAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGC 398
           AG++  V  GRL         VAIKTL  G +E+   DF ++ S +    HP+++ + G 
Sbjct: 14  AGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGV 73

Query: 399 CSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
            ++ K   IV EYM NG+L   L      +        LR          +  G+ +L  
Sbjct: 74  VTKSKPVMIVTEYMENGSLDAFLRKHDGQFTVIQLVGMLR---------GIASGMKYLSD 124

Query: 457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
                 VH  L   +IL++ NLV K+S  GL+
Sbjct: 125 MG---YVHRDLAARNILVNSNLVCKVSDFGLS 153

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 51.3 bits (123), Expect = 5e-07
 Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 21/148 (14%)

Query: 353 VYRGRLNHAS---VAIKTL---NNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSEL--KC 404
           +YRGR   A    VA+KTL    +   E DF  +   ++   H ++V ++G   E   + 
Sbjct: 26  LYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLPRF 85

Query: 405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVH 464
           I+ E M  G+L+  L   + N     R  +L   D +  A +V  G  +L   E    +H
Sbjct: 86  ILLELMAGGDLKSFL---RENRPRPERPSSLTMKDLLFCARDVAKGCKYL---EENHFIH 139

Query: 465 GSLTPSSILL-----DRNLVAKISGLGL 487
             +   + LL      R  VAKI+  G+
Sbjct: 140 RDIAARNCLLTCKGPGR--VAKIADFGM 165

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 51.1 bits (123), Expect = 6e-07
 Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 50/196 (25%)

Query: 353 VYRGR--LNHASVAIKTLN--NGLSEEDFQAKVSFLTAVRHPHLVAVMGCC---SELKCI 405
           VY+ R       VAIK +   +   +E    ++  L   +HP++V   G      EL  I
Sbjct: 16  VYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELW-I 74

Query: 406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIA---HEVCLGLSFLHSTEPRPI 462
           V E+   G+L+D L       K+ ++      L    IA    E+  GL +LHS     I
Sbjct: 75  VMEFCSGGSLKDLL-------KSTNQT-----LTESQIAYVCKELLKGLEYLHSNG---I 119

Query: 463 VHGSLTPSSILLDRNLVAKISGLGLNI------------------------CDQLNVRSD 498
           +H  +  ++ILL  +   K+   GL+                             + ++D
Sbjct: 120 IHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVINGKPYDYKAD 179

Query: 499 IRAFGTLLLHLLTGRN 514
           I + G   + L  G+ 
Sbjct: 180 IWSLGITAIELAEGKP 195

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 27/153 (17%)

Query: 353 VYRGRLNHAS-------VAIKTLNNGLSEED---FQAKVSFLTAVRHPHLVAVMGCCSEL 402
           VY G             VAIKT+N   S  +   F  + S +      H+V ++G  S  
Sbjct: 22  VYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTG 81

Query: 403 K--CIVFEYMPNGNLRDKLFTSQRNYKNC------SRARALRWLDRIHIAHEVCLGLSFL 454
           +   +V E M  G+L+  L + +   +N       +  + ++       A E+  G+++L
Sbjct: 82  QPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQM------AAEIADGMAYL 135

Query: 455 HSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
            +   +  VH  L   + ++  +L  KI   G+
Sbjct: 136 AA---KKFVHRDLAARNCMVAEDLTVKIGDFGM 165

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 51.3 bits (123), Expect = 7e-07
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 20/132 (15%)

Query: 363 VAIKTLNNGLSE--EDFQAKVSFLTAVRHPHLVAVMGCC-----SELKCIVFEYMPNGNL 415
           VA+K L +  +E   DF+ ++  L +++H ++V   G C       L+ +V EY+P G+L
Sbjct: 36  VAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLR-LVMEYLPYGSL 94

Query: 416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD 475
           RD L   Q++ +     + L        A ++C G+ +L S   +  VH  L   +IL++
Sbjct: 95  RDYL---QKHRERLDHRKLL------LYASQICKGMEYLGS---KRYVHRDLATRNILVE 142

Query: 476 RNLVAKISGLGL 487
                KI   GL
Sbjct: 143 SENRVKIGDFGL 154

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 17/129 (13%)

Query: 363 VAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCC-SELKCIVFEYMPNGNLRDK 418
           VA+KTL        +++F  + S +  + HP +V ++G C  E   +V E  P G L   
Sbjct: 26  VAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCKGEPLMLVMELAPLGPLLKY 85

Query: 419 LFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL 478
           L    +  +    +           AH+V +G+++L   E +  VH  L   ++LL    
Sbjct: 86  L----KKRREIPVSDLKEL------AHQVAMGMAYL---ESKHFVHRDLAARNVLLVNRH 132

Query: 479 VAKISGLGL 487
            AKIS  G+
Sbjct: 133 QAKISDFGM 141

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 33/164 (20%)

Query: 348 GDWTNVYRGRLNHAS------------VAIKTLN-NGLSEEDFQAKVSFLTAVRHPHLVA 394
           G +TN+Y+G L   S            V +K L  +      F    S ++ + H HLV 
Sbjct: 6   GTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQLSHKHLVK 65

Query: 395 VMGCCSELKCI-VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSF 453
           + G C   + I V EY+  G L D     ++N  +      L W   + +A ++   L +
Sbjct: 66  LYGVCVRDENIMVEEYVKFGPL-DVFLHREKNNVS------LHWK--LDVAKQLASALHY 116

Query: 454 LHSTEPRPIVHGSLTPSSILLDRN-------LVAKISGLGLNIC 490
           L   E + +VHG++   +IL+ R           K+S  G+ I 
Sbjct: 117 L---EDKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPIT 157

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 259

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 19/151 (12%)

Query: 352 NVYRGRLNHASVAIKTLN---NGLSEEDFQAKVSFLTAVRHPHLVAVMGCC--SELKCIV 406
           NV +GR     VA+K L    N  +  DF  +V  L+ ++ P+++ ++G C   +  C++
Sbjct: 40  NVRKGR--PLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRLLGVCVDEDPLCMI 97

Query: 407 FEYMPNGNLRDKLFTSQRNYKNCSRARA---------LRWLDRIHIAHEVCLGLSFLHST 457
            EYM NG+L   L +   + K  +   A         + +   +H+A ++  G+ +L S 
Sbjct: 98  TEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSL 157

Query: 458 EPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
                VH  L   + L+  NL  KI+  G++
Sbjct: 158 N---FVHRDLATRNCLVGENLTIKIADFGMS 185

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 17/138 (12%)

Query: 363 VAIKTLN--NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLR-- 416
           VA+K L      + +DFQ +   LT ++H H+V   G C +     +VFEYM +G+L   
Sbjct: 38  VAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKF 97

Query: 417 ------DKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPS 470
                 D +       +       L  +  +HIA ++  G+ +L S      VH  L   
Sbjct: 98  LRAHGPDAMILVDGQPRQAKGELGLSQM--LHIASQIASGMVYLASQH---FVHRDLATR 152

Query: 471 SILLDRNLVAKISGLGLN 488
           + L+  NL+ KI   G++
Sbjct: 153 NCLVGANLLVKIGDFGMS 170

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.0 bits (122), Expect = 2e-06
 Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 35/156 (22%)

Query: 381 VSFLTAVRHPHLVAVMGCCSELKC--IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWL 438
           ++ +  ++HP++V ++G C   K   ++ EY+   NL + L             R L W 
Sbjct: 734 IADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVL-------------RNLSWE 780

Query: 439 DRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAK-ISGLGLNIC------- 490
            R  IA  +   L FLH      +V G+L+P  I++D          L   +C       
Sbjct: 781 RRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLRLSLPGLLCTDTKCFI 840

Query: 491 ------------DQLNVRSDIRAFGTLLLHLLTGRN 514
                         +  +SDI  FG +L+ LLTG++
Sbjct: 841 SSAYVAPETRETKDITEKSDIYGFGLILIELLTGKS 876

Length = 968

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 40/138 (28%), Positives = 57/138 (41%), Gaps = 32/138 (23%)

Query: 364 AIKTLNNG--LSEEDFQA----KVSFLTA--VRHPHLVAVMGC--CSELKCIVFEYMPNG 413
           AIK L  G  ++ ++ ++    K  F TA   RHP LV +  C    +  C V EY   G
Sbjct: 28  AIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFVMEYAAGG 87

Query: 414 NL----RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTP 469
           +L       +F+  R                +  A  V LGL +LH      IV+  L  
Sbjct: 88  DLMMHIHTDVFSEPRA---------------VFYAACVVLGLQYLHE---NKIVYRDLKL 129

Query: 470 SSILLDRNLVAKISGLGL 487
            ++LLD     KI+  GL
Sbjct: 130 DNLLLDTEGFVKIADFGL 147

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 20/145 (13%)

Query: 348 GDWTNVYRGRLNHASVAIKTLNNG-LSE--EDFQAKVSFLTAVRHPHLVAVMGCC--SEL 402
           G+W+      +    VA+K L +  LS+  +DF  + + + ++ H +L+ + G      L
Sbjct: 14  GEWSTSGGKVIP---VAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLTHPL 70

Query: 403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             +V E  P G+L D+L       K+      +  L     A ++  G+ +L S   +  
Sbjct: 71  M-MVTELAPLGSLLDRL------RKDALGHFLISTL--CDYAVQIANGMRYLES---KRF 118

Query: 463 VHGSLTPSSILLDRNLVAKISGLGL 487
           +H  L   +ILL  +   KI   GL
Sbjct: 119 IHRDLAARNILLASDDKVKIGDFGL 143

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 48.3 bits (116), Expect = 5e-06
 Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 36/157 (22%)

Query: 348 GDWTNVYRGRLNHAS--VAIKTLNNGLSEE-----DFQA--KVSFLTAVRHPH---LVAV 395
           G +  VY+ R       VAIK +  G  +E     +F A  ++  L  ++HP+   L+ V
Sbjct: 11  GTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDV 70

Query: 396 MGCCSELKCIVFEYMPNGNL----RDK-LFTSQRNYKNCSRARALRWLDRIHIAHEVCLG 450
            G  S +  +VFE+M   +L    +DK +  +  + K+        ++           G
Sbjct: 71  FGHKSNI-NLVFEFME-TDLEKVIKDKSIVLTPADIKS--------YMLMT------LRG 114

Query: 451 LSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
           L +LHS     I+H  L P+++L+  + V K++  GL
Sbjct: 115 LEYLHS---NWILHRDLKPNNLLIASDGVLKLADFGL 148

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 47.9 bits (115), Expect = 7e-06
 Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 31/150 (20%)

Query: 352 NVYRGR--LNHASVAIKTLNNGLSEEDF--QAK--VSFLTAVRHPHLVAVMG-CCSELKC 404
            VY+ R       VA+K +     +E F   A   +  L  +RHP++V +     S+ K 
Sbjct: 14  QVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKG 73

Query: 405 ---IVFEYMP---NGNLRDKLFT-SQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHST 457
              +VFEYM     G L       ++   K                  ++  GL +LHS 
Sbjct: 74  SIYMVFEYMDHDLTGLLDSPEVKFTESQIK--------------CYMKQLLEGLQYLHS- 118

Query: 458 EPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
               I+H  +  S+IL++ + V K++  GL
Sbjct: 119 --NGILHRDIKGSNILINNDGVLKLADFGL 146

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

 Score = 47.7 bits (113), Expect = 8e-06
 Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 24/176 (13%)

Query: 330 DIRLATEDFSERFRLKCAGDWTNVYRGRL-------NHASVAIKTLNN---GLSEEDFQA 379
           +I L+T  F E       G    VY+G L          +VAIKTL +   G   E+F+ 
Sbjct: 1   EINLSTVRFMEELGEDRFG---KVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKH 57

Query: 380 KVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSR------ 431
           +    + ++HP++V ++G  ++ +   ++F Y  + +L + L     +    S       
Sbjct: 58  EAMMRSRLQHPNIVCLLGVVTKEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTV 117

Query: 432 ARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
              L   D +HI  ++  G+ FL S     +VH  L   ++L+   L  KIS LGL
Sbjct: 118 KSTLEPADFVHIVTQIAAGMEFLSSHH---VVHKDLATRNVLVFDKLNVKISDLGL 170

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror2 plays important roles in skeletal and heart formation. Ror2-deficient mice show widespread bone abnormalities, ventricular defects in the heart, and respiratory dysfunction. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Ror2 is also implicated in neural development. Length = 283

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 27/130 (20%), Positives = 55/130 (42%), Gaps = 9/130 (6%)

Query: 363 VAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRD 417
           V +K L     E    +F+ ++     + H ++V ++G C E +   ++ EY   G+L+ 
Sbjct: 38  VLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPHYMILEYTDLGDLKQ 97

Query: 418 KLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN 477
            L  ++       +   L    ++ +  ++ LG+  L +      VH  L   + L+   
Sbjct: 98  FLRATKSK-DEKLKPPPLSTKQKVALCTQIALGMDHLSNAR---FVHRDLAARNCLVSSQ 153

Query: 478 LVAKISGLGL 487
              K+S L L
Sbjct: 154 REVKVSLLSL 163

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 47.5 bits (113), Expect = 9e-06
 Identities = 54/223 (24%), Positives = 86/223 (38%), Gaps = 50/223 (22%)

Query: 340 ERFRLKCAGDWTNVY--RGRLNHASVAIKTLN-NGLSEEDFQA---KVSFLTAVRHPHLV 393
           E+ R+   G +  V+  R + +   V IK +    +++++  A   +   L  + HP+++
Sbjct: 3   EKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNII 62

Query: 394 AVMGCCSELKC--IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGL 451
                  E K   IV EY P G L +     + N            LD   I H     L
Sbjct: 63  EYYENFLEDKALMIVMEYAPGGTLAE-YIQKRCN----------SLLDEDTILHFFVQIL 111

Query: 452 SFLHSTEPRPIVHGSLTPSSILLDRN-LVAKISGLGLN---------------------- 488
             LH    + I+H  L   +ILLD++ +V KI   G++                      
Sbjct: 112 LALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSKAYTVVGTPCYISPE 171

Query: 489 ICDQ--LNVRSDIRAFGTLLLHLLT------GRNWAGLVEKAM 523
           +C+    N +SDI A G +L  L +        N   LV K M
Sbjct: 172 LCEGKPYNQKSDIWALGCVLYELASLKRAFEAANLPALVLKIM 214

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 23/151 (15%)

Query: 348 GDWTNVYRGRLN--HASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVA-----VM 396
           G + +VY+ +    +   A+K ++ G       ED   ++  L +V HP++++     + 
Sbjct: 11  GSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLD 70

Query: 397 GCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
           G      CIV EY P G+L   +  S+R  K         W  RI I  ++  GL  LH 
Sbjct: 71  GN---KLCIVMEYAPFGDLSKAI--SKRKKKRKLIPEQEIW--RIFI--QLLRGLQALHE 121

Query: 457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
              + I+H  L  ++ILL  N + KI  LG+
Sbjct: 122 ---QKILHRDLKSANILLVANDLVKIGDLGI 149

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 26/115 (22%)

Query: 353 VYRGRLNHAS--VAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCC---SELKC 404
           VY+      +  VAIK ++   +E   ED Q ++ FL+  R P++    G     S+L  
Sbjct: 17  VYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKL-W 75

Query: 405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIA---HEVCLGLSFLHS 456
           I+ EY   G+  D L    +  K          LD  +IA    EV LGL +LH 
Sbjct: 76  IIMEYCGGGSCLDLL----KPGK----------LDETYIAFILREVLLGLEYLHE 116

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 32/134 (23%), Positives = 65/134 (48%), Gaps = 13/134 (9%)

Query: 363 VAIKTLN---NGLSEEDFQAKVSFLTAVRHPHLVAVMGCC--SELKCIVFEYMPNGNLRD 417
           VA+K L    N  +  DF  ++  ++ ++ P+++ ++  C  S+  C++ EYM NG+L  
Sbjct: 49  VAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRLLAVCITSDPLCMITEYMENGDLNQ 108

Query: 418 KLFTSQRNYKNC---SRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL 474
             F S+   +     +    + +   I +A ++  G+ +L S      VH  L   + L+
Sbjct: 109 --FLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLN---FVHRDLATRNCLV 163

Query: 475 DRNLVAKISGLGLN 488
            +N   KI+  G++
Sbjct: 164 GKNYTIKIADFGMS 177

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 15/150 (10%)

Query: 359 NHASVAIKTLNNGLSE---EDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVFEYMPN 412
              + AIK L    SE    DF  ++  L  +  HP+++ ++G C       I  EY P 
Sbjct: 28  LKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIAIEYAPY 87

Query: 413 GNLRDKLFTSQRNYKNCSRAR------ALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGS 466
           GNL D L  S+    + + A+       L     +  A +V  G+ +L   +    +H  
Sbjct: 88  GNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEKQ---FIHRD 144

Query: 467 LTPSSILLDRNLVAKISGLGLNICDQLNVR 496
           L   ++L+  NL +KI+  GL+  +++ V+
Sbjct: 145 LAARNVLVGENLASKIADFGLSRGEEVYVK 174

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 61/243 (25%), Positives = 108/243 (44%), Gaps = 52/243 (21%)

Query: 347 AGDWTNVYRGRLN-HASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCS-ELK 403
           AG +  V+    N H  VA+KT+  G +S E F A+ + +  ++H  LV +    + E  
Sbjct: 16  AGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPI 75

Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
            I+ E+M  G+L D L + + + +   +         I  + ++  G++F+   E R  +
Sbjct: 76  YIITEFMAKGSLLDFLKSDEGSKQPLPKL--------IDFSAQIAEGMAFI---EQRNYI 124

Query: 464 HGSLTPSSILLDRNLVAKISGLGLN--ICDQ------------------------LNVRS 497
           H  L  ++IL+  +LV KI+  GL   I D                           ++S
Sbjct: 125 HRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKS 184

Query: 498 DIRAFGTLLLHLLT-GRN-WAGLV--EKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIA 553
           D+ +FG LL+ ++T GR  + G+   E   AL++   M   +        +  EEL  I 
Sbjct: 185 DVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPE--------NCPEELYNIM 236

Query: 554 LKC 556
           ++C
Sbjct: 237 MRC 239

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 37/159 (23%), Positives = 75/159 (47%), Gaps = 26/159 (16%)

Query: 341 RFRLKCA---GDWTNVYRGRLNHAS---VAIKTL-NNGLSEE---DFQAKVSFLTAVRHP 390
            ++L      G +  VY+G LN  +   VAIK +    + EE       ++  L  ++HP
Sbjct: 1   NYQLGDLIGRGAFGVVYKG-LNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHP 59

Query: 391 HLVAVMGCC--SELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVC 448
           ++V  +G    S+   I+ EY  NG+LR  +    + +     +    ++      ++V 
Sbjct: 60  NIVKYIGSIETSDSLYIILEYAENGSLRQII----KKFGPFPESLVAVYV------YQVL 109

Query: 449 LGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
            GL++LH    + ++H  +  ++IL  ++ V K++  G+
Sbjct: 110 QGLAYLHE---QGVIHRDIKAANILTTKDGVVKLADFGV 145

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 16/140 (11%)

Query: 353 VYRGRLNHASVAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCC-SELKCIVFE 408
           VY+ R     VAIK L N   +   ++   +   +  + +P++V ++G C +E   +V E
Sbjct: 15  VYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCEAEALMLVME 74

Query: 409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLT 468
               G L +K  + +++    S          + + H+V +G+ +L   E +  VH  L 
Sbjct: 75  MASGGPL-NKFLSGKKDEITVSNV--------VELMHQVSMGMKYL---EGKNFVHRDLA 122

Query: 469 PSSILLDRNLVAKISGLGLN 488
             ++LL     AKIS  GL+
Sbjct: 123 ARNVLLVNQHYAKISDFGLS 142

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its phosphorylation and activation. It then phosphorylates target proteins, which propagate the signals to downstream pathways. Zap-70 is hardly detected in normal peripheral B-cells, but is present in some B-cell malignancies. It is used as a diagnostic marker for chronic lymphocytic leukemia (CLL) as it is associated with the more aggressive subtype of the disease. Length = 257

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 18/130 (13%)

Query: 363 VAIKTLNNGLSEEDFQAKVSFLTAV---RHPHLVAVMGCC--SELKCIVFEYMPNGNLRD 417
           VAIKT+ +    + FQ     + A+    H ++V ++G C  + L+ +V +  P G+L D
Sbjct: 39  VAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICPGASLQ-LVTQLSPLGSLLD 97

Query: 418 KLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN 477
            +   +++  +    R L W   + IA     G+ +L   E   +VH +L   +ILL  +
Sbjct: 98  HV---RQHRDSLDPQRLLNWC--VQIAK----GMYYL---EEHRMVHRNLAARNILLKSD 145

Query: 478 LVAKISGLGL 487
            + +I+  G+
Sbjct: 146 SIVQIADFGV 155

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 19/112 (16%)

Query: 382 SFLTAVRHPHLVAVMGCC-----SELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALR 436
               + + P++V   G       S +  I  EY   G+L          YK   + R  R
Sbjct: 51  EINKSCKSPYIVKYYGAFLDESSSSIG-IAMEYCEGGSL-------DSIYKKV-KKRGGR 101

Query: 437 WLDRI--HIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG 486
             +++   IA  V  GLS+LHS   R I+H  + PS+ILL R    K+   G
Sbjct: 102 IGEKVLGKIAESVLKGLSYLHS---RKIIHRDIKPSNILLTRKGQVKLCDFG 150

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 14/143 (9%)

Query: 353 VYRGRLNHASVAIKTLNNGLSEED---FQAKVSFLTAVRHPHLVAVMGCCSELK--CIVF 407
            +RG ++ A V +K L    + ++   F  +V     + HP+++  +G C E     +V 
Sbjct: 16  AHRG-MSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVL 74

Query: 408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSL 467
           E+ P G+L++ L +++      ++   L+      +A EV  GL +LH  +    +H  L
Sbjct: 75  EFCPLGDLKNYLRSNRGMVAQMAQKDVLQ-----RMACEVASGLLWLHQAD---FIHSDL 126

Query: 468 TPSSILLDRNLVAKISGLGLNIC 490
              +  L  +L  KI   GL + 
Sbjct: 127 ALRNCQLTADLSVKIGDYGLALE 149

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 46/187 (24%), Positives = 77/187 (41%), Gaps = 45/187 (24%)

Query: 363 VAIKTLNNGLSEED---FQAKVSFLTAVRHPHLVAVMGCC--SELKCIVFEYMPNGNLRD 417
           VA+KTL  G ++++   F  +   ++   HP++V ++G C  +E + I+ E M  G+L  
Sbjct: 29  VAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMELMEGGDLLS 88

Query: 418 KLFTSQRNYKNCSRARALRWL-DRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL-- 474
            L    R+ +       L  L + + I  +V  G  +L        +H  L   + L+  
Sbjct: 89  YL----RDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMH---FIHRDLAARNCLVSE 141

Query: 475 ---DRNLVAKISGLGL--NICDQ----------LNVR---------------SDIRAFGT 504
              D + V KI   GL  +I             L VR               SD+ +FG 
Sbjct: 142 KGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGV 201

Query: 505 LLLHLLT 511
           L+  +LT
Sbjct: 202 LMWEILT 208

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 20/138 (14%)

Query: 356 GRLNHASVAIKTLNNGLSEEDFQA---KVSFLTAVRHPHLVAVMGCC-SELKCIVFEYMP 411
           G      VAIK L    S +  +    +   + +V HPH+V ++G C S    ++ + MP
Sbjct: 32  GEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLSSQVQLITQLMP 91

Query: 412 NGNLRDKLFTSQRNYKNCSRARA-LRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPS 470
            G L D +    RN+K+   ++  L W   + IA     G+S+L   E + +VH  L   
Sbjct: 92  LGCLLDYV----RNHKDNIGSQYLLNW--CVQIAK----GMSYL---EEKRLVHRDLAAR 138

Query: 471 SILLD-RNLVAKISGLGL 487
           ++L+     V KI+  GL
Sbjct: 139 NVLVKTPQHV-KITDFGL 155

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 45.0 bits (106), Expect = 5e-05
 Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 24/150 (16%)

Query: 348 GDWTNVYRGRL-NHASVAIKTLNNGLSEEDFQAKVSFLTAVR------HPHLVAVMGCCS 400
           G++  V++G L +   VA+KT    L +E    K+ FL+  R      HP++V ++G C+
Sbjct: 6   GNFGEVFKGTLKDKTPVAVKTCKEDLPQE---LKIKFLSEARILKQYDHPNIVKLIGVCT 62

Query: 401 ELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTE 458
           + +   IV E +P G+    L    R  K+  + + L     +  A +   G+++L   E
Sbjct: 63  QRQPIYIVMELVPGGDFLSFL----RKKKDELKTKQL-----VKFALDAAAGMAYL---E 110

Query: 459 PRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
            +  +H  L   + L+  N V KIS  G++
Sbjct: 111 SKNCIHRDLAARNCLVGENNVLKISDFGMS 140

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 45.0 bits (106), Expect = 8e-05
 Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 19/165 (11%)

Query: 348 GDWTNVYRGRLN----HASVAIKTLNNGLSEED---FQAKVSFLTAV-RHPHLVAVMGCC 399
           G++  V + R+         AIK +    S++D   F  ++  L  +  HP+++ ++G C
Sbjct: 18  GNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGAC 77

Query: 400 SE--LKCIVFEYMPNGNLRDKLFTSQRNYKNC------SRARALRWLDRIHIAHEVCLGL 451
                  +  EY P+GNL D L  S+    +       S A  L     +H A +V  G+
Sbjct: 78  EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGM 137

Query: 452 SFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVR 496
            +L   +    +H  L   +IL+  N VAKI+  GL+   ++ V+
Sbjct: 138 DYLSQKQ---FIHRDLAARNILVGENYVAKIADFGLSRGQEVYVK 179

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 19/131 (14%)

Query: 363 VAIKTLNNGLSEEDFQAKV----SFLTAVRHPHLVAVMGCCSELKCI--VFEYMPNGNLR 416
           VA+K +     E     +       L A +HP++V ++           V EYMP+  L 
Sbjct: 28  VALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEYMPSD-LS 86

Query: 417 DKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR 476
           + L       ++  R      +        +  G++++H+     I+H  L P+++L+  
Sbjct: 87  EVL-------RDEERPLPEAQVKSY--MRMLLKGVAYMHANG---IMHRDLKPANLLISA 134

Query: 477 NLVAKISGLGL 487
           + V KI+  GL
Sbjct: 135 DGVLKIADFGL 145

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 15/109 (13%)

Query: 380 KVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRW 437
           ++  L  ++H  +V   GC  + +   I  EYMP G+++D+L       +  +R    + 
Sbjct: 54  EIQLLKNLQHERIVQYYGCLRDDETLSIFMEYMPGGSVKDQLKAYGALTETVTRKYTRQI 113

Query: 438 LDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG 486
           L+          G+ +LHS     IVH  +  ++IL D     K+   G
Sbjct: 114 LE----------GVEYLHSNM---IVHRDIKGANILRDSAGNVKLGDFG 149

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 42/197 (21%), Positives = 72/197 (36%), Gaps = 48/197 (24%)

Query: 364 AIKTLN----NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRD 417
           A+K ++    N    E+   +   L  +   +++       +     IV EY  NG+L  
Sbjct: 29  AMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEYAENGDLHK 88

Query: 418 KLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN 477
            L    +  +         W  R  I  ++ LGL+ LHS   + I+H  +   ++ LD  
Sbjct: 89  LL----KMQRGRPLPEDQVW--RFFI--QILLGLAHLHS---KKILHRDIKSLNLFLDAY 137

Query: 478 LVAKISGLGL-----------------------NICDQ--LNVRSDIRAFGTLLLHLLTG 512
              KI  LG+                        +C+    N +SD+ A G +L    TG
Sbjct: 138 DNVKIGDLGVAKLLSDNTNFANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTG 197

Query: 513 R------NWAGLVEKAM 523
           +      N   L+ K +
Sbjct: 198 KHPFDANNQGALILKII 214

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 16/130 (12%)

Query: 362 SVAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCSELKC-IVFEYMPNGNLRD 417
           +VA+KT  N  S    E F  +   +    HPH+V ++G  +E    IV E  P G LR 
Sbjct: 36  AVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITENPVWIVMELAPLGELRS 95

Query: 418 KLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN 477
            L   Q N  +   A  + +      ++++   L++L S      VH  +   ++L+   
Sbjct: 96  YL---QVNKYSLDLASLILY------SYQLSTALAYLESKR---FVHRDIAARNVLVSSP 143

Query: 478 LVAKISGLGL 487
              K+   GL
Sbjct: 144 DCVKLGDFGL 153

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 17/138 (12%)

Query: 363 VAIKTLNNGLSEEDFQAKVS----FLTAVRHPHLVAVMGCCSE---LKCIVFEYMPNGNL 415
           VA+K L +  +E+D    VS         +H +++ ++G C++   L  +V EY  +GNL
Sbjct: 45  VAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEGPLYVVV-EYAAHGNL 103

Query: 416 RDKLFTSQRNYKNCSR------ARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTP 469
           RD L   +   +  S          L   D +  A++V  G+ FL S   +  +H  L  
Sbjct: 104 RDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLAS---KKCIHRDLAA 160

Query: 470 SSILLDRNLVAKISGLGL 487
            ++L+  + V KI+  GL
Sbjct: 161 RNVLVTEDHVMKIADFGL 178

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 44.6 bits (106), Expect = 2e-04
 Identities = 38/187 (20%), Positives = 82/187 (43%), Gaps = 14/187 (7%)

Query: 125 LDDASNSEDGDEILQTRAIEPNAAEQIDSNMSVAERTEFMKSKINEAREMIRLKKKETKD 184
            +D   +ED  E L+ R    +  E I       E       ++ E    +  + +E ++
Sbjct: 501 AEDLVEAEDRIERLEERR--EDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKRE 558

Query: 185 DA----ERCAKAKWAICLCNSR----ADQLESLTK--EDVASRMEIQRDLDSLKEQSCEV 234
            A    E   +A+  +   NS+     +++ESL +    +A+  + + +++ L+E+   +
Sbjct: 559 AAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREAL 618

Query: 235 IRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQR 294
               +E + RL+   E + EL  +   + + +  A    E+A     ++ + ++ELR +R
Sbjct: 619 AELNDERRERLAEKRERKRELEAEFDEARIEE--AREDKERAEEYLEQVEEKLDELREER 676

Query: 295 DVLHRRI 301
           D L   I
Sbjct: 677 DDLQAEI 683

Length = 880

>gnl|CDD|165291 PHA02988, PHA02988, hypothetical protein; Provisional

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 50/250 (20%), Positives = 94/250 (37%), Gaps = 51/250 (20%)

Query: 348 GDWTNVYRGRLNHASVAIKTL-----NNGLSEEDFQAKVSFLTAVRHPHLVAVMG----C 398
            D  ++Y+G  N+  V I+T       + +  +  + ++  L  +   +++ + G     
Sbjct: 31  NDQNSIYKGIFNNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDI 90

Query: 399 CSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
             +L    ++ EY   G LR+ L       K+ S    L       +A + C GL  L+ 
Sbjct: 91  VDDLPRLSLILEYCTRGYLREVL----DKEKDLSFKTKLD------MAIDCCKGLYNLYK 140

Query: 457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGL------------------------NICDQ 492
              +P  + +LT  S L+  N   KI   GL                        +I  +
Sbjct: 141 YTNKP--YKNLTSVSFLVTENYKLKIICHGLEKILSSPPFKNVNFMVYFSYKMLNDIFSE 198

Query: 493 LNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGI 552
             ++ DI + G +L  + TG+    +  + +   +   + +   N+   PLD   E+  I
Sbjct: 199 YTIKDDIYSLGVVLWEIFTGK----IPFENLTTKEIYDLIINKNNSLKLPLDCPLEIKCI 254

Query: 553 ALKCLSADQD 562
              C S D  
Sbjct: 255 VEACTSHDSI 264

Length = 283

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 15/147 (10%)

Query: 362 SVAIKTLNNGLSE---EDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVFEYMPNGNL 415
             AIK +    S+    DF  ++  L  +  HP+++ ++G C       +  EY P+GNL
Sbjct: 24  DAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNL 83

Query: 416 RDKLFTSQRNYKNCSRAR------ALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTP 469
            D L  S+    + + A        L     +H A +V  G+ +L   +    +H  L  
Sbjct: 84  LDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ---FIHRDLAA 140

Query: 470 SSILLDRNLVAKISGLGLNICDQLNVR 496
            +IL+  N VAKI+  GL+   ++ V+
Sbjct: 141 RNILVGENYVAKIADFGLSRGQEVYVK 167

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 47/195 (24%), Positives = 87/195 (44%), Gaps = 41/195 (21%)

Query: 347 AGDWTNVYRGRLNHAS-VAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCS--EL 402
           AG +  V+ G  N+++ VA+KTL  G +S + F  + + +  ++H  LV +    +  E 
Sbjct: 16  AGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEP 75

Query: 403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             I+ EYM  G+L D L  S    K       +     I  + ++  G++++   E +  
Sbjct: 76  IYIITEYMAKGSLLDFL-KSDEGGK-------VLLPKLIDFSAQIAEGMAYI---ERKNY 124

Query: 463 VHGSLTPSSILLDRNLVAKISGLGLN--ICDQ------------------------LNVR 496
           +H  L  +++L+  +L+ KI+  GL   I D                           ++
Sbjct: 125 IHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIK 184

Query: 497 SDIRAFGTLLLHLLT 511
           SD+ +FG LL  ++T
Sbjct: 185 SDVWSFGILLYEIVT 199

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 32/160 (20%), Positives = 72/160 (45%), Gaps = 28/160 (17%)

Query: 348 GDWTNVYRGRLNH-----ASVAIKTL---NNGLSE-EDFQAKVSFLTAVRHPHLVAVMGC 398
           G++ +V  G+L+        VA+KT+    +  SE E+F ++ + +    HP+++ ++G 
Sbjct: 10  GEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGV 69

Query: 399 CSELK--------CIVFEYMPNGNLRDKLFTSQ--RNYKNCSRARALRWLDRIHIAHEVC 448
           C E           ++  +M +G+L   L  S+     +       L++        ++ 
Sbjct: 70  CFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKF------MVDIA 123

Query: 449 LGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
           LG+ +L +   R  +H  L   + +L  ++   ++  GL+
Sbjct: 124 LGMEYLSN---RNFIHRDLAARNCMLREDMTVCVADFGLS 160

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 21/133 (15%)

Query: 363 VAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGCCSE-----LKCIVFEYMPNGN 414
           VA+K+L          D + ++  L  + H ++V   G C+E     +K I+ E++P+G+
Sbjct: 36  VAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIM-EFLPSGS 94

Query: 415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL 474
           L++ L    RN    +  + L++      A ++C G+ +L S   R  VH  L   ++L+
Sbjct: 95  LKEYL---PRNKNKINLKQQLKY------AVQICKGMDYLGS---RQYVHRDLAARNVLV 142

Query: 475 DRNLVAKISGLGL 487
           +     KI   GL
Sbjct: 143 ESEHQVKIGDFGL 155

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 39/212 (18%), Positives = 67/212 (31%), Gaps = 16/212 (7%)

Query: 107 ENCVQEIEI----YFQHLASFNLDDASNSEDGDEILQTRAIEPNAAEQIDSNMSVAERTE 162
               +   I                    ED   IL T       A +  +    A++ E
Sbjct: 7   PIQTKPFTIPKCEDSIKGEQARYK-QIEQEDQSRILNTLEEFEKEANEKRAQYRSAKKKE 65

Query: 163 -------FMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVA 215
                   +  K  +        K+      +  AK +    L   +  +LE L KE   
Sbjct: 66  LSQLEEQLINQKKEQKNLFNEQIKQFELALQDEIAKLEALELLNLEKDKELELLEKELDE 125

Query: 216 SRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEK 275
              E+Q+ L +   +  E  R+  +++ RL    E + E S +L+     +   EA L+ 
Sbjct: 126 LSKELQKQLQN-TAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDL 184

Query: 276 AVIARAEIVKDIEELRRQRDVLHRRIEFCKEK 307
                 E  +  E        L RR E   ++
Sbjct: 185 EF---KENEEQRESKWAILKKLKRRAELGSQQ 213

Length = 438

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 50/209 (23%), Positives = 81/209 (38%), Gaps = 62/209 (29%)

Query: 348 GDWTNVYRGRL-----NHASVAIKTLNNGLSEEDFQAKVSFLT------AVRHPHLVAVM 396
           G +  VY G L          A+K+LN      D +    FL          HP++++++
Sbjct: 6   GHFGCVYHGTLIDSDGQKIHCAVKSLNR---ITDLEEVEQFLKEGIIMKDFSHPNVLSLL 62

Query: 397 GCC--SE-LKCIVFEYMPNGNLRDKLFTSQRN--YKNCSRARALRWLDRIHIAHEVCLGL 451
           G C  SE    +V  YM +G+LR+ + +   N   K           D I    +V  G+
Sbjct: 63  GICLPSEGSPLVVLPYMKHGDLRNFIRSETHNPTVK-----------DLIGFGLQVAKGM 111

Query: 452 SFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL--NICDQ----------------- 492
            +L S   +  VH  L   + +LD +   K++  GL  +I D+                 
Sbjct: 112 EYLAS---KKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKW 168

Query: 493 ----------LNVRSDIRAFGTLLLHLLT 511
                        +SD+ +FG LL  L+T
Sbjct: 169 MALESLQTQKFTTKSDVWSFGVLLWELMT 197

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 41.8 bits (99), Expect = 7e-04
 Identities = 36/156 (23%), Positives = 54/156 (34%), Gaps = 45/156 (28%)

Query: 348 GDWTNVYRGRLNHAS--VAIKTLNNGLSEEDFQAKVSFLTAVRHPHLV----AVMGCCSE 401
           G ++ V   +    +   AIK L+              L   +    V     V+   + 
Sbjct: 12  GSFSTVVLAKEKETNKEYAIKILDK-----------RQLIKEKKVKYVKIEKEVLTRLNG 60

Query: 402 LKCI---------------VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHE 446
              I               V EY PNG L   +    R Y +               A E
Sbjct: 61  HPGIIKLYYTFQDEENLYFVLEYAPNGELLQYI----RKYGSLDEKCTR------FYAAE 110

Query: 447 VCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKI 482
           + L L +LHS   + I+H  L P +ILLD+++  KI
Sbjct: 111 ILLALEYLHS---KGIIHRDLKPENILLDKDMHIKI 143

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 42.0 bits (98), Expect = 7e-04
 Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 22/167 (13%)

Query: 331 IRLATEDFSERFRLKCAGDWTNVYRG------RLNHASVAIKTLNNGLSEE---DFQAKV 381
           +R+  E   +R ++  +G +  VY+G            VAIK LN     +   +F  + 
Sbjct: 1   LRILKETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEA 60

Query: 382 SFLTAVRHPHLVAVMGCC-SELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDR 440
             + ++ HPHLV ++G C S    +V + MP+G L D +     +  N      L W   
Sbjct: 61  LIMASMDHPHLVRLLGVCLSPTIQLVTQLMPHGCLLDYV---HEHKDNIGSQLLLNWC-- 115

Query: 441 IHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
           + IA     G+ +L   E R +VH  L   ++L+      KI+  GL
Sbjct: 116 VQIAK----GMMYL---EERRLVHRDLAARNVLVKSPNHVKITDFGL 155

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 41.4 bits (98), Expect = 8e-04
 Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 17/108 (15%)

Query: 384 LTAVRHPHLVAVMGCC--SELK-CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDR 440
           L+ + HP +V  +     +E K  +V EY P G    +LF+        S  RA  +   
Sbjct: 47  LSRINHPFIVK-LHYAFQTEEKLYLVLEYAPGG----ELFSHLSKEGRFSEERARFY--- 98

Query: 441 IHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
              A E+ L L +LHS     I++  L P +ILLD +   K++  GL 
Sbjct: 99  ---AAEIVLALEYLHS---LGIIYRDLKPENILLDADGHIKLTDFGLA 140

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 48/185 (25%), Positives = 72/185 (38%), Gaps = 50/185 (27%)

Query: 364 AIKTLNNG--LSEEDFQA----KVSFLTAVRHPHLVAVMGCCSELK---CIVFEYMPNGN 414
           A+K L     L ++D +     K     A +HP L   +  C + K     V EY+  G+
Sbjct: 24  AVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQ-LHSCFQTKDRLFFVMEYVNGGD 82

Query: 415 LRDKLFTSQRNYK-NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSIL 473
           L   +F  QR+ + +  RAR          A E+ LGL FLH    R I++  L   ++L
Sbjct: 83  L---MFHIQRSGRFDEPRAR--------FYAAEIVLGLQFLHE---RGIIYRDLKLDNVL 128

Query: 474 LDRNLVAKISGLGL---NICDQLNVRS----------------------DIRAFGTLLLH 508
           LD     KI+  G+    I   +   +                      D  A G LL  
Sbjct: 129 LDSEGHIKIADFGMCKEGILGGVTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYE 188

Query: 509 LLTGR 513
           +L G+
Sbjct: 189 MLAGQ 193

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 21/103 (20%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 375 EDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRA 432
           E  + ++  +  + HPH++ ++G   E     +  E+M  G++   L      Y     A
Sbjct: 48  EALRKEIRLMARLNHPHIIRMLGATCEDSHFNLFVEWMAGGSVSHLL----SKYGAFKEA 103

Query: 433 RALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD 475
             + +        ++  GLS+LH      I+H  +  +++L+D
Sbjct: 104 VIINYT------EQLLRGLSYLHE---NQIIHRDVKGANLLID 137

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 13/84 (15%)

Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
            +V EY+P G+L   L     N  +     A     RI+IA E+ L L +LHS     I+
Sbjct: 69  YLVMEYLPGGDLASLL----ENVGSLDEDVA-----RIYIA-EIVLALEYLHSNG---II 115

Query: 464 HGSLTPSSILLDRNLVAKISGLGL 487
           H  L P +IL+D N   K++  GL
Sbjct: 116 HRDLKPDNILIDSNGHLKLTDFGL 139

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 13/138 (9%)

Query: 358 LNHASVAIKTLNNGLSEED---FQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPN 412
              A V +K L    S ++   F  +     +++H +L+  +G C+E+    +V E+ P 
Sbjct: 20  YTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPL 79

Query: 413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSI 472
           G+L+  L  S R  +          L R+  A E+ LGL  LH       +H  L   + 
Sbjct: 80  GDLKGYL-RSCRKAELM--TPDPTTLQRM--ACEIALGLLHLHKNN---FIHSDLALRNC 131

Query: 473 LLDRNLVAKISGLGLNIC 490
           LL  +L  KI   GL+  
Sbjct: 132 LLTADLTVKIGDYGLSHN 149

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells. Aatyk1 has been implicated in neural differentiation, and is a regulator of the Na-K-2Cl cotransporter, a membrane protein involved in cell proliferation and survival, epithelial transport, and blood pressure control. The function of Aatyk3 is still unknown. Length = 269

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 17/139 (12%)

Query: 362 SVAIKTLNNGLSEEDFQAKVSFLTAV----RHPHLVAVMGCCSE---LKCIVFEYMPNGN 414
           +VA+K L +  +E+D    VS +  +    +H +++ ++G C++   L  IV EY   GN
Sbjct: 49  TVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIV-EYASKGN 107

Query: 415 LRDKLFTSQ---RNYK-NCSRA--RALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLT 468
           LR+ L   +     Y  + +R     + + D +   ++V  G+ +L S +    +H  L 
Sbjct: 108 LREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQK---CIHRDLA 164

Query: 469 PSSILLDRNLVAKISGLGL 487
             ++L+  N V KI+  GL
Sbjct: 165 ARNVLVTENNVMKIADFGL 183

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 23/132 (17%)

Query: 363 VAIKTLNNGLSEEDFQAK----VSFLTAVRHPHLVAVMGCC-SELKC-IVFEYMPNGNLR 416
           VAIK       +ED +      V  L  +RH ++V +      + +  +VFEY+    L 
Sbjct: 29  VAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFEYVER-TLL 87

Query: 417 DKLFTSQRNYKNCSRA--RALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL 474
           + L   + +         R+  W        ++   +++ HS     I+H  + P +IL+
Sbjct: 88  ELL---EASPGGLPPDAVRSYIW--------QLLQAIAYCHSHN---IIHRDIKPENILV 133

Query: 475 DRNLVAKISGLG 486
             + V K+   G
Sbjct: 134 SESGVLKLCDFG 145

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 1/155 (0%)

Query: 149 EQIDSNMSVAE-RTEFMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLE 207
           E++ + +   E + E ++ +++E  E I   +KE    A   ++ +    +   R   LE
Sbjct: 256 EELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE 315

Query: 208 SLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKG 267
              +E  A   E++  LD L E+  E+   +EE K  L SL     EL  +L+       
Sbjct: 316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE 375

Query: 268 HAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIE 302
             E QLE      A++   I  L  + + L  R+E
Sbjct: 376 ELEEQLETLRSKVAQLELQIASLNNEIERLEARLE 410

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 17/116 (14%)

Query: 374 EEDFQAKVSFLTAVRHPHLVAVMGCCSELKC---IVFEYMPNGNLRDKLFTSQRNYKNCS 430
           E+    +   L  V HP ++  +      +    ++ EY+P G    +LF+  RN    S
Sbjct: 45  EQHVHNEKRVLKEVSHPFIIR-LFWTEHDQRFLYMLMEYVPGG----ELFSYLRNSGRFS 99

Query: 431 RARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG 486
            +  L +      A E+   L +LHS E   IV+  L P +ILLD+    K++  G
Sbjct: 100 NSTGLFY------ASEIVCALEYLHSKE---IVYRDLKPENILLDKEGHIKLTDFG 146

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 39/178 (21%), Positives = 81/178 (45%), Gaps = 7/178 (3%)

Query: 136 EILQTRAIEPNAAEQIDSNMSVAERTEFMKSKINEAREMIRLKKKETKDDAERCAKAKWA 195
           E+ +         E+++      +  E +KS++ E RE +   ++E  +  E   + +  
Sbjct: 247 ELSRLEEELEELQEELEEA---EKEIEELKSELEELREELEELQEELLELKEEIEELEGE 303

Query: 196 ICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQ---SCEVIRDVEESKNRLSSLI-EL 251
           I L   R ++LE+  +E      E++  +++LKE+      ++ ++E+    L     EL
Sbjct: 304 ISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEEL 363

Query: 252 QSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFCKEKDA 309
           + +LS  L+           +L +     AEI  ++EEL+R+ + L  R+E   E+  
Sbjct: 364 EEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLE 421

Length = 1163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	683
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	100.0
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	100.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	100.0
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.98
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.98
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.98
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.98
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.98
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.98
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.98
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.98
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.98
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.98
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.98
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.98
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.98
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.98
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.98
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.98
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.98
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.98
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.98
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.98
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.98
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.98
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.98
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.98
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.98
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.98
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.98
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.98
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.98
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.98
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.98
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.98
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.98
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.98
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.98
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.98
KOG0610	459	consensus Putative serine/threonine protein kinase	99.98
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.97
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.97
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.97
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.97
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.97
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.97
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.97
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.97
PTZ00284	467	protein kinase; Provisional	99.97
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.97
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.97
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.97
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.97
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.97
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.97
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.97
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.97
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.97
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.97
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.97
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.97
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.97
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.97
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.97
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.97
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.97
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.97
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.97
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.97
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.97
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.97
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.97
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.97
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.97
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.97
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.97
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.97
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.97
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.97
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.97
PHA03209	357	serine/threonine kinase US3; Provisional	99.97
PHA03207	392	serine/threonine kinase US3; Provisional	99.97
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.97
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.97
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.97
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.97
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.97
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.97
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.97
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.97
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.97
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.97
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.97
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.97
KOG0584	632	consensus Serine/threonine protein kinase [General	99.97
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.97
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.97
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.97
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.97
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.97
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.97
PHA03211	461	serine/threonine kinase US3; Provisional	99.97
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.97
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.97
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.97
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.97
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.97
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.97
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.97
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.97
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.97
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.97
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.97
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.97
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.97
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.97
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.97
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.97
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.97
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.97
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.97
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.97
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.97
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.97
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.97
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.97
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.97
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.97
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.97
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.97
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.97
PLN00009	294	cyclin-dependent kinase A; Provisional	99.97
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.97
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.97
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.96
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.96
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.96
PHA02882	294	putative serine/threonine kinase; Provisional	99.96
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.96
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.96
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.96
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.96
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.96
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.96
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.96
KOG0586	596	consensus Serine/threonine protein kinase [General	99.96
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.96
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.96
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.96
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.96
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.96
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.96
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.96
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.96
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.96
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.96
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.96
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.96
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.96
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.96
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.96
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.96
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.96
PHA03210	501	serine/threonine kinase US3; Provisional	99.96
KOG3653	534	consensus Transforming growth factor beta/activin	99.96
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.96
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.95
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.95
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.95
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.95
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.95
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.94
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.94
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.94
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.94
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.94
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.94
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.94
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.94
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.93
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.93
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.93
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.93
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.92
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.92
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.92
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.92
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.91
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.9
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.89
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.88
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.88
KOG1152	772	consensus Signal transduction serine/threonine kin	99.88
PLN00181	793	protein SPA1-RELATED; Provisional	99.86
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.85
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.84
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.83
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.83
PRK09188	365	serine/threonine protein kinase; Provisional	99.81
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.8
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.8
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.8
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.77
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.76
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.76
PRK12274	218	serine/threonine protein kinase; Provisional	99.75
PRK14879	211	serine/threonine protein kinase; Provisional	99.74
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.73
PRK10345	210	hypothetical protein; Provisional	99.72
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.71
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.71
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.7
smart00090	237	RIO RIO-like kinase.	99.69
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.68
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.67
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.66
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.65
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.65
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.63
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.61
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.6
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.59
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.57
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.57
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.49
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.37
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.37
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.29
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.22
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.17
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	99.14
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.13
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.12
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.05
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	99.05
KOG3087	229	consensus Serine/threonine protein kinase [General	99.0
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.99
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.97
KOG1243	690	consensus Protein kinase [General function predict	98.95
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.86
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.77
KOG0606	1205	consensus Microtubule-associated serine/threonine	98.73
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.67
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.67
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.55
COG4248	637	Uncharacterized protein with protein kinase and he	98.45
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.43
PRK09902	216	hypothetical protein; Provisional	98.38
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	98.32
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	98.26
KOG1235	538	consensus Predicted unusual protein kinase [Genera	98.21
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.17
PF01636	239	APH: Phosphotransferase enzyme family This family	98.11
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	98.06
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.05
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	97.95
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	97.89
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	97.88
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	97.87
PLN02876	822	acyl-CoA dehydrogenase	97.86
PRK10593	297	hypothetical protein; Provisional	97.82
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	97.8
PRK05231	319	homoserine kinase; Provisional	97.69
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	97.68
KOG2042	943	consensus Ubiquitin fusion degradation protein-2 [	97.66
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	97.65
PRK09550	401	mtnK methylthioribose kinase; Reviewed	97.6
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	97.57
COG5113	929	UFD2 Ubiquitin fusion degradation protein 2 [Postt	97.56
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	97.19
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	97.08
PLN02756	418	S-methyl-5-thioribose kinase	97.06
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	97.02
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	96.92
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	96.8
KOG0576	829	consensus Mitogen-activated protein kinase kinase	96.69
COG2334	331	Putative homoserine kinase type II (protein kinase	96.59
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	96.58
PRK06148	1013	hypothetical protein; Provisional	96.53
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.51
PLN02236	344	choline kinase	96.48
PRK12396	409	5-methylribose kinase; Reviewed	96.42
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	96.41
KOG2270	520	consensus Serine/threonine protein kinase involved	96.3
KOG1093	725	consensus Predicted protein kinase (contains TBC a	96.3
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	96.12
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	96.05
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	95.96
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	95.85
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	95.79
PRK11768	325	serine/threonine protein kinase; Provisional	95.7
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	95.62

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-45  Score=397.10  Aligned_cols=248  Identities=37%  Similarity=0.651  Sum_probs=210.3

Q ss_pred             cccccCHHHHHHhhcCccccccccccCCceEEEEEEEC-CeeEEEEEcCCCCC--HHHHHHHHHHHHhcCCCCccceecc
Q 005680          322 AFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLN-HASVAIKTLNNGLS--EEDFQAKVSFLTAVRHPHLVAVMGC  398 (683)
Q Consensus       322 ~~~~~s~~ei~~at~~F~~~~~liG~G~fG~Vykg~~~-g~~VAvK~l~~~~~--~~~~~~Ev~iL~~l~HpnIV~l~g~  398 (683)
                      ..+.|++.+|..||+||+..+.+ |+|+||.||+|.+. |..||||++.....  ..+|.+|+.+|++++|||||+|+||
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~i-g~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGy  139 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLI-GEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGY  139 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcce-ecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEE
Confidence            67889999999999999988654 68889999999994 58999999984443  4679999999999999999999999


Q ss_pred             ccc--c-eeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccccc
Q 005680          399 CSE--L-KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD  475 (683)
Q Consensus       399 ~~~--~-~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld  475 (683)
                      |.+  . .+||||||++|||.++|+..       ... +|+|..+++|+.++|.||+|||..++++||||||||+|||||
T Consensus       140 C~e~~~~~~LVYEym~nGsL~d~L~~~-------~~~-~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD  211 (361)
T KOG1187|consen  140 CLEGGEHRLLVYEYMPNGSLEDHLHGK-------KGE-PLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLD  211 (361)
T ss_pred             EecCCceEEEEEEccCCCCHHHHhCCC-------CCC-CCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeEC
Confidence            976  3 89999999999999999754       122 899999999999999999999998877999999999999999


Q ss_pred             CCCcEEEecCCCccc--------------------------cCCCcccccccHHHHHHHHhhCCCCchh---------hH
Q 005680          476 RNLVAKISGLGLNIC--------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGL---------VE  520 (683)
Q Consensus       476 ~~~~~KL~DFGla~~--------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~---------~~  520 (683)
                      .++.+||+|||+|+.                          +..+.|+|||||||+|+||+||++|.+.         +.
T Consensus       212 ~~~~aKlsDFGLa~~~~~~~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~  291 (361)
T KOG1187|consen  212 EDFNAKLSDFGLAKLGPEGDTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVE  291 (361)
T ss_pred             CCCCEEccCccCcccCCccccceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHH
Confidence            999999999998643                          2356799999999999999999987652         23


Q ss_pred             HHh-hhhHHHHHHHhcCCC--CCCCh-hhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          521 KAM-ALDQTTLMQVLDGNA--GIWPL-DLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       521 ~~~-~~~~~~~~~ild~~~--~~~p~-~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      |.. ......+..++|+..  ..++. .....+..++.+|++.+  |..||+|.+|++.|+.+.
T Consensus       292 w~~~~~~~~~~~eiiD~~l~~~~~~~~~~~~~~~~~a~~C~~~~--~~~RP~m~~Vv~~L~~~~  353 (361)
T KOG1187|consen  292 WAKPLLEEGKLREIVDPRLKEGEYPDEKEVKKLAELALRCLRPD--PKERPTMSQVVKELEGIL  353 (361)
T ss_pred             HHHHHHHCcchhheeCCCccCCCCChHHHHHHHHHHHHHHcCcC--CCcCcCHHHHHHHHHhhc
Confidence            321 222336778888864  45554 56777999999999999  789999999999996654

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-41  Score=354.10  Aligned_cols=221  Identities=24%  Similarity=0.329  Sum_probs=191.7

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcC---CCCCHHHHHHHHHHHHhcCCCCccceeccccc--c-eeEEEeecCC
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLN---NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--L-KCIVFEYMPN  412 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~---~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~-~~LV~Ey~~g  412 (683)
                      ....+|.|..|+||++.+  +++.+|+|++.   ......++.+|++++..++|||||.+||+|..  . .+|+||||++
T Consensus        83 ~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mEYMDg  162 (364)
T KOG0581|consen   83 RLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICMEYMDG  162 (364)
T ss_pred             hhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehhhcCC
Confidence            346779999999999999  68999999996   33345789999999999999999999999965  3 8999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |||++++          ...+.+++....+|+.+|++||.|||..  ++||||||||+||||+..|.+||||||.++.  
T Consensus       163 GSLd~~~----------k~~g~i~E~~L~~ia~~VL~GL~YLh~~--~~IIHRDIKPsNlLvNskGeVKicDFGVS~~lv  230 (364)
T KOG0581|consen  163 GSLDDIL----------KRVGRIPEPVLGKIARAVLRGLSYLHEE--RKIIHRDIKPSNLLVNSKGEVKICDFGVSGILV  230 (364)
T ss_pred             CCHHHHH----------hhcCCCCHHHHHHHHHHHHHHHHHHhhc--cCeeeccCCHHHeeeccCCCEEeccccccHHhh
Confidence            9999999          4557799999999999999999999952  5699999999999999999999999998753  


Q ss_pred             ---------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChh-hHHH
Q 005680          491 ---------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLD-LAEE  548 (683)
Q Consensus       491 ---------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~-~~~~  548 (683)
                                           ..|+.++||||||++++||.+|+.||..........-..+..+++...+..|.. ++++
T Consensus       231 nS~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~~~~~~Ll~~Iv~~ppP~lP~~~fS~e  310 (364)
T KOG0581|consen  231 NSIANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPYLDIFELLCAIVDEPPPRLPEGEFSPE  310 (364)
T ss_pred             hhhcccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCCCCCCHHHHHHHHhcCCCCCCCcccCCHH
Confidence                                 468999999999999999999999986531111123455677888777888886 9999


Q ss_pred             HHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          549 LAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      +++++..||++|  |+.|||+.+++..
T Consensus       311 f~~FV~~CL~Kd--p~~R~s~~qLl~H  335 (364)
T KOG0581|consen  311 FRSFVSCCLRKD--PSERPSAKQLLQH  335 (364)
T ss_pred             HHHHHHHHhcCC--cccCCCHHHHhcC
Confidence            999999999999  8899999998865

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=1e-40  Score=360.74  Aligned_cols=224  Identities=29%  Similarity=0.504  Sum_probs=193.0

Q ss_pred             cccCCceEEEEEEECCee-EEEEEcCCC-CC---HHHHHHHHHHHHhcCCCCccceecccccc---eeEEEeecCCCCch
Q 005680          345 KCAGDWTNVYRGRLNHAS-VAIKTLNNG-LS---EEDFQAKVSFLTAVRHPHLVAVMGCCSEL---KCIVFEYMPNGNLR  416 (683)
Q Consensus       345 iG~G~fG~Vykg~~~g~~-VAvK~l~~~-~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~~---~~LV~Ey~~ggsL~  416 (683)
                      +|.|+||+||+|.+.|.. ||||++... ..   ...|.+|+.+|++++|||||+++|+|.+.   .+|||||+++|+|.
T Consensus        49 iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~~GsL~  128 (362)
T KOG0192|consen   49 LGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYMPGGSLS  128 (362)
T ss_pred             cccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeCCCCcHH
Confidence            789999999999999988 999999732 12   45899999999999999999999999873   78999999999999


Q ss_pred             hhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCC-cEEEecCCCccc-----
Q 005680          417 DKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL-VAKISGLGLNIC-----  490 (683)
Q Consensus       417 ~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~-~~KL~DFGla~~-----  490 (683)
                      ++|+..        ....+++..++.|+.|||.||.|||+.+|  ||||||||+||||+.++ ++||+|||+++.     
T Consensus       129 ~~l~~~--------~~~~l~~~~~l~~aldiArGm~YLH~~~~--iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~  198 (362)
T KOG0192|consen  129 VLLHKK--------RKRKLPLKVRLRIALDIARGMEYLHSEGP--IIHRDLKSDNILVDLKGKTLKIADFGLSREKVISK  198 (362)
T ss_pred             HHHhhc--------ccCCCCHHHHHHHHHHHHHHHHHHhcCCC--eeecccChhhEEEcCCCCEEEECCCccceeecccc
Confidence            999632        35789999999999999999999999553  99999999999999998 999999999853     


Q ss_pred             -------------------c---CCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHH
Q 005680          491 -------------------D---QLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE  548 (683)
Q Consensus       491 -------------------~---~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~  548 (683)
                                         +   .|+.|+|||||||+||||+||+.||......    ......+....++..|..+++.
T Consensus       199 ~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~~----~~~~~v~~~~~Rp~~p~~~~~~  274 (362)
T KOG0192|consen  199 TSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAPV----QVASAVVVGGLRPPIPKECPPH  274 (362)
T ss_pred             ccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCHH----HHHHHHHhcCCCCCCCccCCHH
Confidence                               2   3899999999999999999999999764321    1122223355677778889999


Q ss_pred             HHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhcc
Q 005680          549 LAGIALKCLSADQDANRDLRIAGVMKELDEVRKKAD  584 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~~  584 (683)
                      +..|+.+||..|  |..||++.+++..|+.+.....
T Consensus       275 l~~l~~~CW~~d--p~~RP~f~ei~~~l~~~~~~~~  308 (362)
T KOG0192|consen  275 LSSLMERCWLVD--PSRRPSFLEIVSRLESIMSHIS  308 (362)
T ss_pred             HHHHHHHhCCCC--CCcCCCHHHHHHHHHHHHHhhc
Confidence            999999999999  8899999999999999987544

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-40  Score=360.63  Aligned_cols=221  Identities=29%  Similarity=0.458  Sum_probs=196.8

Q ss_pred             cccccCCceEEEEEEECCe-eEEEEEcCC-CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCchhh
Q 005680          343 RLKCAGDWTNVYRGRLNHA-SVAIKTLNN-GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRDK  418 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g~-~VAvK~l~~-~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~~  418 (683)
                      +-+|+|-||.||.|.++|. .||+|.++. ....+.|.+|+.+|.+|+|+|||+++|+|..  +.|||||||+.|||.++
T Consensus       212 ~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m~~GsLl~y  291 (468)
T KOG0197|consen  212 RELGSGQFGEVWLGKWNGSTKVAVKTIKEGSMSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYMPKGSLLDY  291 (468)
T ss_pred             HHhcCCccceEEEEEEcCCCcccceEEeccccChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEecccCcHHHH
Confidence            4468999999999999876 999999984 5566899999999999999999999999976  68999999999999999


Q ss_pred             hhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--------
Q 005680          419 LFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--------  490 (683)
Q Consensus       419 L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--------  490 (683)
                      |...        ....+...+.+.++.|||.|++||++   +++|||||...||||++++.+||+|||||+.        
T Consensus       292 Lr~~--------~~~~l~~~~Ll~~a~qIaeGM~YLes---~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y~~  360 (468)
T KOG0197|consen  292 LRTR--------EGGLLNLPQLLDFAAQIAEGMAYLES---KNYIHRDLAARNILVDEDLVVKISDFGLARLIGDDEYTA  360 (468)
T ss_pred             hhhc--------CCCccchHHHHHHHHHHHHHHHHHHh---CCccchhhhhhheeeccCceEEEcccccccccCCCceee
Confidence            9642        45678999999999999999999999   7799999999999999999999999999975        


Q ss_pred             ------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHH
Q 005680          491 ------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAG  551 (683)
Q Consensus       491 ------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~  551 (683)
                                        +.++.|||||||||+||||+| |+.||....     ....+..+-.+.+.+.|..||+.+.+
T Consensus       361 ~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~ms-----n~ev~~~le~GyRlp~P~~CP~~vY~  435 (468)
T KOG0197|consen  361 SEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMS-----NEEVLELLERGYRLPRPEGCPDEVYE  435 (468)
T ss_pred             cCCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCCC-----HHHHHHHHhccCcCCCCCCCCHHHHH
Confidence                              457899999999999999999 999987543     23445556667888899999999999


Q ss_pred             HHHHhhhcCCCccccccHHHHHHHHHHHHH
Q 005680          552 IALKCLSADQDANRDLRIAGVMKELDEVRK  581 (683)
Q Consensus       552 Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~  581 (683)
                      |+..||+.+  |++|||+..+...|+.+..
T Consensus       436 lM~~CW~~~--P~~RPtF~~L~~~l~~~~~  463 (468)
T KOG0197|consen  436 LMKSCWHED--PEDRPTFETLREVLEDFFT  463 (468)
T ss_pred             HHHHHhhCC--cccCCCHHHHHHHHHHhhh
Confidence            999999999  8899999999999988764

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=6.9e-40  Score=358.79  Aligned_cols=218  Identities=22%  Similarity=0.316  Sum_probs=191.0

Q ss_pred             CccccccccccCCceEEEEEEE--CCeeEEEEEcC-----CCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEE
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN-----NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVF  407 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~-----~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~  407 (683)
                      .++...+++|+|||+.||.++.  +|..||+|++.     .....+.+.+||+|.+.|+|||||+++++|+|  +.|||+
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivL   97 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVL   97 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEE
Confidence            4566778999999999999998  79999999997     34556789999999999999999999999988  899999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCC
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL  487 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGl  487 (683)
                      |+|++|+|..++          +...++++.+++.|+.||+.||.|||+   .+|||||||..|+||+++.++||+||||
T Consensus        98 ELC~~~sL~el~----------Krrk~ltEpEary~l~QIv~GlkYLH~---~~IiHRDLKLGNlfL~~~~~VKIgDFGL  164 (592)
T KOG0575|consen   98 ELCHRGSLMELL----------KRRKPLTEPEARYFLRQIVEGLKYLHS---LGIIHRDLKLGNLFLNENMNVKIGDFGL  164 (592)
T ss_pred             EecCCccHHHHH----------HhcCCCCcHHHHHHHHHHHHHHHHHHh---cCceecccchhheeecCcCcEEecccce
Confidence            999999999999          567899999999999999999999999   6799999999999999999999999999


Q ss_pred             ccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCC
Q 005680          488 NIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWP  542 (683)
Q Consensus       488 a~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p  542 (683)
                      |..                         ..++..+||||+|||||-||+|+|||....     -...+..+. .....+|
T Consensus       165 At~le~~~Erk~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~-----vkety~~Ik-~~~Y~~P  238 (592)
T KOG0575|consen  165 ATQLEYDGERKKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKT-----VKETYNKIK-LNEYSMP  238 (592)
T ss_pred             eeeecCcccccceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccch-----HHHHHHHHH-hcCcccc
Confidence            854                         346789999999999999999999997521     123333332 3344567


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ..++.+..+||.++|..|  |.+|||+++|+..
T Consensus       239 ~~ls~~A~dLI~~lL~~~--P~~Rpsl~~vL~h  269 (592)
T KOG0575|consen  239 SHLSAEAKDLIRKLLRPN--PSERPSLDEVLDH  269 (592)
T ss_pred             cccCHHHHHHHHHHhcCC--cccCCCHHHHhcC
Confidence            789999999999999999  8899999999864

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=1e-38  Score=344.75  Aligned_cols=275  Identities=21%  Similarity=0.293  Sum_probs=214.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 005680          230 QSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFCKEKDA  309 (683)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~e~l~~~r~~~~~~~e~~~~~~~  309 (683)
                      ....+++.+........++.+++..++.++.......+++...+.      ....+|.+.||.+|..             
T Consensus        77 ~k~~ien~Y~~~~~~~~~R~er~~~le~~l~~~~~s~~~~~~~~~------~~~~kEte~lR~~R~r-------------  137 (550)
T KOG0605|consen   77 AKQYIENHYSSQIKYLNERKERRKELEEKLASEDVSEEEQNELLK------SLLSKETEYLRLRRTR-------------  137 (550)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH------HHhhHHHHHHHhcccc-------------
Confidence            344466667777777788888888888887776544444333322      2233355555544321             


Q ss_pred             ccchhhhccccccccccCHHHHHHhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHH
Q 005680          310 IGMVIRSSELSCAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVS  382 (683)
Q Consensus       310 ~~~~~~~~~~~~~~~~~s~~ei~~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~  382 (683)
                                             ...++|. .+++||+|+||.||+|+-  +|..+|+|+++.     ......+..|-.
T Consensus       138 -----------------------~~~~DFe-~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERd  193 (550)
T KOG0605|consen  138 -----------------------LSLDDFE-LLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERD  193 (550)
T ss_pred             -----------------------CCcccch-hheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHH
Confidence                                   1345564 457889999999999986  799999999983     234577899999


Q ss_pred             HHHhcCCCCccceeccccc--ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCC
Q 005680          383 FLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPR  460 (683)
Q Consensus       383 iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~  460 (683)
                      +|....+|+||+||..|++  .+||||||+|||++..+|          .....|++..+..++.+++.|+..||.   .
T Consensus       194 iL~~~ds~~vVKLyYsFQD~~~LYLiMEylPGGD~mTLL----------~~~~~L~e~~arfYiaE~vlAI~~iH~---~  260 (550)
T KOG0605|consen  194 ILAEVDSPWVVKLYYSFQDKEYLYLIMEYLPGGDMMTLL----------MRKDTLTEDWARFYIAETVLAIESIHQ---L  260 (550)
T ss_pred             HhhhcCCCcEEEEEEEecCCCeeEEEEEecCCccHHHHH----------HhcCcCchHHHHHHHHHHHHHHHHHHH---c
Confidence            9999999999999999988  899999999999999999          577899999999999999999999999   6


Q ss_pred             cEEeccCCCCcccccCCCcEEEecCCCccc--------------------------------------------------
Q 005680          461 PIVHGSLTPSSILLDRNLVAKISGLGLNIC--------------------------------------------------  490 (683)
Q Consensus       461 ~IiHrDLKP~NILld~~~~~KL~DFGla~~--------------------------------------------------  490 (683)
                      |||||||||+|+|||..|++||+|||||..                                                  
T Consensus       261 gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~n  340 (550)
T KOG0605|consen  261 GYIHRDIKPDNLLIDAKGHIKLSDFGLSTGLDKKHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRN  340 (550)
T ss_pred             CcccccCChhheeecCCCCEeeccccccchhhhhhhhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhh
Confidence            799999999999999999999999999842                                                  


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC-CCCCCC--hhh
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG-NAGIWP--LDL  545 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~-~~~~~p--~~~  545 (683)
                                            ..|+..+|+||||||+||||.|.|||.....     ..++..++.- ....+|  ..+
T Consensus       341 rr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG~ImyEmLvGyPPF~s~tp-----~~T~rkI~nwr~~l~fP~~~~~  415 (550)
T KOG0605|consen  341 RRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLGCIMYEMLVGYPPFCSETP-----QETYRKIVNWRETLKFPEEVDL  415 (550)
T ss_pred             hhhhhhcccCCccccchHHHhcCCCCccccHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHHHHHhhhccCCCcCcc
Confidence                                  2478899999999999999999999975322     3333344332 112233  346


Q ss_pred             HHHHHHHHHHhhhcCCCcccccc
Q 005680          546 AEELAGIALKCLSADQDANRDLR  568 (683)
Q Consensus       546 ~~~l~~Li~~CL~~dP~p~~RPs  568 (683)
                      +.+..+||.+||. |  |..|..
T Consensus       416 s~eA~DLI~rll~-d--~~~RLG  435 (550)
T KOG0605|consen  416 SDEAKDLITRLLC-D--PENRLG  435 (550)
T ss_pred             cHHHHHHHHHHhc-C--HHHhcC
Confidence            7999999999998 8  678875

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=8.4e-40  Score=343.15  Aligned_cols=224  Identities=23%  Similarity=0.297  Sum_probs=186.2

Q ss_pred             HhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC---------CHHHHHHHHHHHHhcCCCCccceeccccc
Q 005680          333 LATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL---------SEEDFQAKVSFLTAVRHPHLVAVMGCCSE  401 (683)
Q Consensus       333 ~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~---------~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~  401 (683)
                      .+.++|+...+.+|+|+||.|-+|..  +|+.||||+++...         ....+.+|+++|++|+|||||+++++|.+
T Consensus       168 ks~~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~  247 (475)
T KOG0615|consen  168 KSFNDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEV  247 (475)
T ss_pred             chhcceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeec
Confidence            44678888888999999999999987  79999999998211         22346799999999999999999999966


Q ss_pred             --ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC--
Q 005680          402 --LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN--  477 (683)
Q Consensus       402 --~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~--  477 (683)
                        ..||||||+.||+|.+++          -....+.+..-..++.|++.|+.|||+   +||+||||||+|||+..+  
T Consensus       248 ~ds~YmVlE~v~GGeLfd~v----------v~nk~l~ed~~K~~f~Qll~avkYLH~---~GI~HRDiKPeNILl~~~~e  314 (475)
T KOG0615|consen  248 PDSSYMVLEYVEGGELFDKV----------VANKYLREDLGKLLFKQLLTAVKYLHS---QGIIHRDIKPENILLSNDAE  314 (475)
T ss_pred             CCceEEEEEEecCccHHHHH----------HhccccccchhHHHHHHHHHHHHHHHH---cCcccccCCcceEEeccCCc
Confidence              779999999999999999          456678888889999999999999999   779999999999999766  


Q ss_pred             -CcEEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHH
Q 005680          478 -LVAKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTT  529 (683)
Q Consensus       478 -~~~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~  529 (683)
                       ..+||+|||+|+.                           ..+..++|+||+|||||-+++|.+||....    .+...
T Consensus       315 ~~llKItDFGlAK~~g~~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~----~~~sl  390 (475)
T KOG0615|consen  315 DCLLKITDFGLAKVSGEGSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEY----TDPSL  390 (475)
T ss_pred             ceEEEecccchhhccccceehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCccccc----CCccH
Confidence             7899999999975                           124458999999999999999999997421    11223


Q ss_pred             HHHHhcCCCCCCC---hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          530 LMQVLDGNAGIWP---LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       530 ~~~ild~~~~~~p---~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ..++..+.....|   ..++++..+||.+||..|  |..|||+.+++..
T Consensus       391 ~eQI~~G~y~f~p~~w~~Iseea~dlI~~mL~Vd--P~~R~s~~eaL~h  437 (475)
T KOG0615|consen  391 KEQILKGRYAFGPLQWDRISEEALDLINWMLVVD--PENRPSADEALNH  437 (475)
T ss_pred             HHHHhcCcccccChhhhhhhHHHHHHHHHhhEeC--cccCcCHHHHhcC
Confidence            3445554332222   368999999999999999  7799999998764

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=8.2e-38  Score=328.66  Aligned_cols=217  Identities=24%  Similarity=0.435  Sum_probs=177.2

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVF  407 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~  407 (683)
                      .+|....+ +|.|+||+||+|++  ++..||||.+....    ..+.+..|+.+|+.++|||||.+++++.+  ..||||
T Consensus        10 ~~y~~~~~-iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVM   88 (429)
T KOG0595|consen   10 GDYELSRE-IGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVM   88 (429)
T ss_pred             ccceehhh-ccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEE
Confidence            45555445 68999999999998  68999999997332    34668899999999999999999999965  889999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC------CcEE
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN------LVAK  481 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~------~~~K  481 (683)
                      |||.||+|.++|          ...+.+++..+..++.|||.||++||+   ++||||||||.||||+..      -.+|
T Consensus        89 EyC~gGDLs~yi----------~~~~~l~e~t~r~Fm~QLA~alq~L~~---~~IiHRDLKPQNiLLs~~~~~~~~~~LK  155 (429)
T KOG0595|consen   89 EYCNGGDLSDYI----------RRRGRLPEATARHFMQQLASALQFLHE---NNIIHRDLKPQNILLSTTARNDTSPVLK  155 (429)
T ss_pred             EeCCCCCHHHHH----------HHcCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCCcceEEeccCCCCCCCceEE
Confidence            999999999999          455689999999999999999999999   779999999999999765      5689


Q ss_pred             EecCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhc--
Q 005680          482 ISGLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLD--  535 (683)
Q Consensus       482 L~DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild--  535 (683)
                      |+|||+|+.                        ..|+.|+|+||+|+|||+|++|++||......     ..+..+-.  
T Consensus       156 IADFGfAR~L~~~~~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~t~~-----eL~~~~~k~~  230 (429)
T KOG0595|consen  156 IADFGFARFLQPGSMAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAETPK-----ELLLYIKKGN  230 (429)
T ss_pred             ecccchhhhCCchhHHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCccccCHH-----HHHHHHhccc
Confidence            999999975                        57999999999999999999999999743221     11111111  


Q ss_pred             CCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHH
Q 005680          536 GNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVM  573 (683)
Q Consensus       536 ~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl  573 (683)
                      ...+..+...+..+.+|+...+..+  +..|.+..+..
T Consensus       231 ~~~~~~~~~~s~~~~~Ll~~ll~~~--~~~~~~~~~~~  266 (429)
T KOG0595|consen  231 EIVPVLPAELSNPLRELLISLLQRN--PKDRISFEDFF  266 (429)
T ss_pred             cccCchhhhccCchhhhhhHHHhcC--ccccCchHHhh
Confidence            1334445566777889999999998  66777755543

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.2e-38  Score=320.36  Aligned_cols=223  Identities=21%  Similarity=0.320  Sum_probs=184.5

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcC----CCCCHHHHHHHHHHHHhcCCCCccceec-cccc---ceeEEEeec
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLN----NGLSEEDFQAKVSFLTAVRHPHLVAVMG-CCSE---LKCIVFEYM  410 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~----~~~~~~~~~~Ev~iL~~l~HpnIV~l~g-~~~~---~~~LV~Ey~  410 (683)
                      ..+.+|+|+||.||++..  +|..||.|.++    +....+.+..|+.+|++|+|||||++++ .+.+   .++||||||
T Consensus        23 Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlnivmE~c  102 (375)
T KOG0591|consen   23 ILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIVMELC  102 (375)
T ss_pred             HHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHHHHhh
Confidence            346678999999999987  89999999998    2223467889999999999999999999 4433   479999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCC-cEEeccCCCCcccccCCCcEEEecCCCcc
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPR-PIVHGSLTPSSILLDRNLVAKISGLGLNI  489 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~-~IiHrDLKP~NILld~~~~~KL~DFGla~  489 (683)
                      .+|+|..++....      .....+++..+++++.|++.||..+|+.-|+ .|+||||||.||+|+.+|.+||+||||++
T Consensus       103 ~~GDLsqmIk~~K------~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r  176 (375)
T KOG0591|consen  103 DAGDLSQMIKHFK------KQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLGR  176 (375)
T ss_pred             cccCHHHHHHHHH------hccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccchhHh
Confidence            9999999997653      4667899999999999999999999995533 38999999999999999999999999986


Q ss_pred             c-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCC-h
Q 005680          490 C-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWP-L  543 (683)
Q Consensus       490 ~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p-~  543 (683)
                      .                         .+|+.||||||+||++|||+.-++||.....     -.....+-.+..++.| .
T Consensus       177 ~l~s~~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~n~-----~~L~~KI~qgd~~~~p~~  251 (375)
T KOG0591|consen  177 FLSSKTTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGDNL-----LSLCKKIEQGDYPPLPDE  251 (375)
T ss_pred             HhcchhHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccccH-----HHHHHHHHcCCCCCCcHH
Confidence            5                         5799999999999999999999999976321     1112234444455566 6


Q ss_pred             hhHHHHHHHHHHhhhcCCCccccccHHHHHHHH
Q 005680          544 DLAEELAGIALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       544 ~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                      .++..+..||..|+..|  |+.||+...++..+
T Consensus       252 ~YS~~l~~li~~ci~vd--~~~RP~t~~~v~di  282 (375)
T KOG0591|consen  252 HYSTDLRELINMCIAVD--PEQRPDTVPYVQDI  282 (375)
T ss_pred             HhhhHHHHHHHHHccCC--cccCCCcchHHHHH
Confidence            78999999999999999  88999864444443

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-38  Score=327.94  Aligned_cols=213  Identities=24%  Similarity=0.346  Sum_probs=184.5

Q ss_pred             hcCccccccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeE
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCI  405 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~L  405 (683)
                      .++|. ..+++|+|+||+||.++.  +++.+|+|+++.     ........+|..||.+++||.||+++..|++  .+||
T Consensus        24 ~~dF~-~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLyl  102 (357)
T KOG0598|consen   24 PDDFE-ILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYL  102 (357)
T ss_pred             hhhee-eeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEE
Confidence            45554 457889999999999987  689999999982     2345678999999999999999999999987  8999


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecC
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGL  485 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DF  485 (683)
                      |++|+.||.|..+|          .+.+.+++..+..++.+|+.||.|||+   ++||||||||+|||||.+|+++|+||
T Consensus       103 Vld~~~GGeLf~hL----------~~eg~F~E~~arfYlaEi~lAL~~LH~---~gIiyRDlKPENILLd~~GHi~LtDF  169 (357)
T KOG0598|consen  103 VLDYLNGGELFYHL----------QREGRFSEDRARFYLAEIVLALGYLHS---KGIIYRDLKPENILLDEQGHIKLTDF  169 (357)
T ss_pred             EEeccCCccHHHHH----------HhcCCcchhHHHHHHHHHHHHHHHHHh---CCeeeccCCHHHeeecCCCcEEEecc
Confidence            99999999999999          567889999999999999999999999   78999999999999999999999999


Q ss_pred             CCccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCC
Q 005680          486 GLNIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGI  540 (683)
Q Consensus       486 Gla~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~  540 (683)
                      |||+.                         ..|+..+|+|||||++|+|++|.+||.....     ......++......
T Consensus       170 gL~k~~~~~~~~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~~~-----~~~~~~I~~~k~~~  244 (357)
T KOG0598|consen  170 GLCKEDLKDGDATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAEDV-----KKMYDKILKGKLPL  244 (357)
T ss_pred             ccchhcccCCCccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCccH-----HHHHHHHhcCcCCC
Confidence            99964                         4689999999999999999999999975322     33344555555455


Q ss_pred             CChhhHHHHHHHHHHhhhcCCCcccccc
Q 005680          541 WPLDLAEELAGIALKCLSADQDANRDLR  568 (683)
Q Consensus       541 ~p~~~~~~l~~Li~~CL~~dP~p~~RPs  568 (683)
                      .|...+.+.++++.++|..|  |+.|..
T Consensus       245 ~p~~ls~~ardll~~LL~rd--p~~RLg  270 (357)
T KOG0598|consen  245 PPGYLSEEARDLLKKLLKRD--PRQRLG  270 (357)
T ss_pred             CCccCCHHHHHHHHHHhccC--HHHhcC
Confidence            56668999999999999999  778863

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=7.3e-37  Score=321.20  Aligned_cols=234  Identities=21%  Similarity=0.313  Sum_probs=190.5

Q ss_pred             cccccCHHHHHHhhcCccccccccccCCceEEEEEEECCeeEEEEEcCCCC-C----HHHHHHHHHHHHhcCCCCcccee
Q 005680          322 AFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGL-S----EEDFQAKVSFLTAVRHPHLVAVM  396 (683)
Q Consensus       322 ~~~~~s~~ei~~at~~F~~~~~liG~G~fG~Vykg~~~g~~VAvK~l~~~~-~----~~~~~~Ev~iL~~l~HpnIV~l~  396 (683)
                      ..+.++.++|.     +.. ..++|+|++|.||+|.++|+.||||++.... .    .+.|.+|+.+|.+++|||||+++
T Consensus        11 ~~~~i~~~~i~-----~~~-~~~i~~g~~~~v~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~   84 (283)
T PHA02988         11 DIKCIESDDID-----KYT-SVLIKENDQNSIYKGIFNNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIY   84 (283)
T ss_pred             cceecCHHHcC-----CCC-CeEEeeCCceEEEEEEECCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            34556666662     221 2356889999999999999999999997322 1    35677999999999999999999


Q ss_pred             ccccc------ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCC
Q 005680          397 GCCSE------LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPS  470 (683)
Q Consensus       397 g~~~~------~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~  470 (683)
                      |++.+      ..++||||+++|+|.+++.          ....+++.....++.+++.||.|||+.  .+++||||||+
T Consensus        85 g~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~----------~~~~~~~~~~~~i~~~i~~~l~~lH~~--~~~~Hrdlkp~  152 (283)
T PHA02988         85 GFIIDIVDDLPRLSLILEYCTRGYLREVLD----------KEKDLSFKTKLDMAIDCCKGLYNLYKY--TNKPYKNLTSV  152 (283)
T ss_pred             eeEEecccCCCceEEEEEeCCCCcHHHHHh----------hCCCCChhHHHHHHHHHHHHHHHHHhc--CCCCCCcCChh
Confidence            98854      5689999999999999994          445789999999999999999999973  25789999999


Q ss_pred             cccccCCCcEEEecCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh
Q 005680          471 SILLDRNLVAKISGLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD  526 (683)
Q Consensus       471 NILld~~~~~KL~DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~  526 (683)
                      |||++.++.+||+|||+++.                        ..++.++|||||||++|||+||+.||.....     
T Consensus       153 nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~-----  227 (283)
T PHA02988        153 SFLVTENYKLKIICHGLEKILSSPPFKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTT-----  227 (283)
T ss_pred             hEEECCCCcEEEcccchHhhhccccccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCCH-----
Confidence            99999999999999998752                        2578899999999999999999999975322     


Q ss_pred             HHHHHHHhc-CCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          527 QTTLMQVLD-GNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       527 ~~~~~~ild-~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      ......+.. ......|..+++.+.+|+.+||+.|  |..|||+.+++..|+.+.
T Consensus       228 ~~~~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~d--p~~Rps~~ell~~l~~~~  280 (283)
T PHA02988        228 KEIYDLIINKNNSLKLPLDCPLEIKCIVEACTSHD--SIKRPNIKEILYNLSLYK  280 (283)
T ss_pred             HHHHHHHHhcCCCCCCCCcCcHHHHHHHHHHhcCC--cccCcCHHHHHHHHHHHH
Confidence            122222322 2334455578899999999999999  889999999999998875

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-37  Score=334.19  Aligned_cols=220  Identities=24%  Similarity=0.309  Sum_probs=186.3

Q ss_pred             hhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhc-CCCCccceeccccc--ce
Q 005680          334 ATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LK  403 (683)
Q Consensus       334 at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~  403 (683)
                      ..++|.- .+++|.|+|++||+|+.  +++.||||++...     .-.+-+..|-.+|.+| .||.||+||..|.|  .+
T Consensus        71 ~~~DF~F-g~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~sL  149 (604)
T KOG0592|consen   71 TPNDFKF-GKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEESL  149 (604)
T ss_pred             Chhhcch-hheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccce
Confidence            3445533 36789999999999998  7899999999732     2234577899999999 89999999999988  89


Q ss_pred             eEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEe
Q 005680          404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKIS  483 (683)
Q Consensus       404 ~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~  483 (683)
                      |+|+||++||+|.++|          ...+.|++..++.++.+|+.||.|||+   .|||||||||+|||||.+|++||+
T Consensus       150 YFvLe~A~nGdll~~i----------~K~Gsfde~caR~YAAeIldAleylH~---~GIIHRDlKPENILLd~dmhikIT  216 (604)
T KOG0592|consen  150 YFVLEYAPNGDLLDLI----------KKYGSFDETCARFYAAEILDALEYLHS---NGIIHRDLKPENILLDKDGHIKIT  216 (604)
T ss_pred             EEEEEecCCCcHHHHH----------HHhCcchHHHHHHHHHHHHHHHHHHHh---cCceeccCChhheeEcCCCcEEEe
Confidence            9999999999999999          566889999999999999999999999   679999999999999999999999


Q ss_pred             cCCCccc--------------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhh
Q 005680          484 GLGLNIC--------------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMAL  525 (683)
Q Consensus       484 DFGla~~--------------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~  525 (683)
                      |||.|+.                                      ...++.+|+|+||||||+|+.|.|||......   
T Consensus       217 DFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~Ney---  293 (604)
T KOG0592|consen  217 DFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANEY---  293 (604)
T ss_pred             eccccccCChhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccHH---
Confidence            9999864                                      23568999999999999999999999764432   


Q ss_pred             hHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          526 DQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       526 ~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                        ..+..++ .....||+..++.+.+||.+.|..|  |++|+|+.++.+.
T Consensus       294 --liFqkI~-~l~y~fp~~fp~~a~dLv~KLLv~d--p~~Rlt~~qIk~H  338 (604)
T KOG0592|consen  294 --LIFQKIQ-ALDYEFPEGFPEDARDLIKKLLVRD--PSDRLTSQQIKAH  338 (604)
T ss_pred             --HHHHHHH-HhcccCCCCCCHHHHHHHHHHHccC--ccccccHHHHhhC
Confidence              2233333 2445788888999999999999999  8899998776543

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-37  Score=350.66  Aligned_cols=230  Identities=25%  Similarity=0.439  Sum_probs=198.3

Q ss_pred             ccccCCceEEEEEEECC-------eeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          344 LKCAGDWTNVYRGRLNH-------ASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       344 liG~G~fG~Vykg~~~g-------~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      -+|+|+||+||+|...|       ..||||.+++..+   ..+|++|+++|..++|||||+|+|+|.+  +.|+|+|||.
T Consensus       493 eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P~~MvFEYm~  572 (774)
T KOG1026|consen  493 ELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREGDPLCMVFEYMD  572 (774)
T ss_pred             hhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCCeeEEEEEecc
Confidence            45899999999999732       5699999985443   4789999999999999999999999976  8899999999


Q ss_pred             CCCchhhhhhcccccccccc----cccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCC
Q 005680          412 NGNLRDKLFTSQRNYKNCSR----ARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL  487 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~----~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGl  487 (683)
                      .|||.++|............    ..+|+..+.+.|+.|||.|+.||-+   ..+|||||-..|+||.++..|||+|||+
T Consensus       573 ~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~---~~FVHRDLATRNCLVge~l~VKIsDfGL  649 (774)
T KOG1026|consen  573 HGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSS---HHFVHRDLATRNCLVGENLVVKISDFGL  649 (774)
T ss_pred             cccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh---CcccccchhhhhceeccceEEEeccccc
Confidence            99999999765433222112    4459999999999999999999999   5699999999999999999999999999


Q ss_pred             ccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCC
Q 005680          488 NIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAG  539 (683)
Q Consensus       488 a~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~  539 (683)
                      ++.                           +.+|++||||||||+|||++| |+.|+...     .++..+..+.++...
T Consensus       650 sRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~gl-----Sn~EVIe~i~~g~lL  724 (774)
T KOG1026|consen  650 SRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGL-----SNQEVIECIRAGQLL  724 (774)
T ss_pred             chhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCccccc-----chHHHHHHHHcCCcc
Confidence            964                           578999999999999999999 88887654     334556667777778


Q ss_pred             CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          540 IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       540 ~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      +.|.++|.++..|+..||+.+  |.+||++++|-..|+......
T Consensus       725 ~~Pe~CP~~vY~LM~~CW~~~--P~~RPsF~eI~~~L~~~~~~s  766 (774)
T KOG1026|consen  725 SCPENCPTEVYSLMLECWNEN--PKRRPSFKEIHSRLQAWAQAS  766 (774)
T ss_pred             cCCCCCCHHHHHHHHHHhhcC--cccCCCHHHHHHHHHHHHhcC
Confidence            889999999999999999999  789999999999999876543

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=5.7e-37  Score=323.36  Aligned_cols=219  Identities=24%  Similarity=0.331  Sum_probs=180.9

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcCCCC--CHHHHHHHHHHHHhcCCCCccceeccc--cc--ceeEEEeecCC
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL--SEEDFQAKVSFLTAVRHPHLVAVMGCC--SE--LKCIVFEYMPN  412 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~--~~~~~~~Ev~iL~~l~HpnIV~l~g~~--~~--~~~LV~Ey~~g  412 (683)
                      ..+++|+|+||.||++..  +|...|||.+....  ..+.+.+|+.+|++++|||||+++|..  .+  .++|+|||+++
T Consensus        21 ~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~mEy~~~  100 (313)
T KOG0198|consen   21 KGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFMEYAPG  100 (313)
T ss_pred             hhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeeeeccCC
Confidence            346789999999999998  47999999986321  145689999999999999999999964  33  48899999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC-CCcEEEecCCCccc-
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR-NLVAKISGLGLNIC-  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~-~~~~KL~DFGla~~-  490 (683)
                      |||.+++...        . ..|++..+.+++.||+.||.|||+   ++||||||||+||||+. ++.+||+|||+++. 
T Consensus       101 GsL~~~~~~~--------g-~~l~E~~v~~ytr~iL~GL~ylHs---~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~  168 (313)
T KOG0198|consen  101 GSLSDLIKRY--------G-GKLPEPLVRRYTRQILEGLAYLHS---KGIVHCDIKPANILLDPSNGDVKLADFGLAKKL  168 (313)
T ss_pred             CcHHHHHHHc--------C-CCCCHHHHHHHHHHHHHHHHHHHh---CCEeccCcccceEEEeCCCCeEEeccCcccccc
Confidence            9999999533        1 279999999999999999999999   77999999999999999 79999999998752 


Q ss_pred             --------------------------cCCC--cccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCC
Q 005680          491 --------------------------DQLN--VRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWP  542 (683)
Q Consensus       491 --------------------------~~~t--~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p  542 (683)
                                                ....  +++|||||||+++||+||++||....   ......+........+.+|
T Consensus       169 ~~~~~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~~---~~~~~~~~ig~~~~~P~ip  245 (313)
T KOG0198|consen  169 ESKGTKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEFF---EEAEALLLIGREDSLPEIP  245 (313)
T ss_pred             ccccccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhhc---chHHHHHHHhccCCCCCCC
Confidence                                      1222  38999999999999999999987530   0112222233333456888


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHHHH
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                      ..++.+..+++.+|+..|  |..|||+.+++...
T Consensus       246 ~~ls~~a~~Fl~~C~~~~--p~~Rpta~eLL~hp  277 (313)
T KOG0198|consen  246 DSLSDEAKDFLRKCFKRD--PEKRPTAEELLEHP  277 (313)
T ss_pred             cccCHHHHHHHHHHhhcC--cccCcCHHHHhhCh
Confidence            899999999999999999  88999999998765

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=1.5e-36  Score=325.75  Aligned_cols=231  Identities=23%  Similarity=0.376  Sum_probs=183.8

Q ss_pred             ccccccCCceEEEEEEE-------CCeeEEEEEcCCCCC---HHHHHHHHHHHHhc-CCCCccceeccccc---ceeEEE
Q 005680          342 FRLKCAGDWTNVYRGRL-------NHASVAIKTLNNGLS---EEDFQAKVSFLTAV-RHPHLVAVMGCCSE---LKCIVF  407 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~-------~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~---~~~LV~  407 (683)
                      .+.+|.|+||.||+|.+       ++..||||++.....   ...+.+|+.++..+ +|||||+++|+|..   ..++||
T Consensus        12 ~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~~lv~   91 (338)
T cd05102          12 GKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPNGPLMVIV   91 (338)
T ss_pred             eeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCCCceEEEE
Confidence            46678999999999974       246799999974322   35688999999999 89999999998864   578999


Q ss_pred             eecCCCCchhhhhhcccccc----------------------------------------------------cccccccC
Q 005680          408 EYMPNGNLRDKLFTSQRNYK----------------------------------------------------NCSRARAL  435 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~----------------------------------------------------~~~~~~~L  435 (683)
                      ||+++|+|.+++........                                                    ......++
T Consensus        92 ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  171 (338)
T cd05102          92 EFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDDLWKSPL  171 (338)
T ss_pred             ecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhccccccCCC
Confidence            99999999999964321000                                                    00012458


Q ss_pred             CHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-------------------------
Q 005680          436 RWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-------------------------  490 (683)
Q Consensus       436 ~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-------------------------  490 (683)
                      ++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++.                         
T Consensus       172 ~~~~~~~~~~qi~~aL~~LH~---~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~  248 (338)
T cd05102         172 TMEDLICYSFQVARGMEFLAS---RKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESI  248 (338)
T ss_pred             CHHHHHHHHHHHHHHHHHHHH---CCEECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccccCcHHh
Confidence            899999999999999999999   7799999999999999999999999998742                         


Q ss_pred             --cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccc
Q 005680          491 --DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDL  567 (683)
Q Consensus       491 --~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RP  567 (683)
                        ..++.++|||||||++|||++ |.+||.....    .......+.++.....|..+++.+.+|+.+||+.|  |..||
T Consensus       249 ~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~d--p~~RP  322 (338)
T cd05102         249 FDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQI----NEEFCQRLKDGTRMRAPENATPEIYRIMLACWQGD--PKERP  322 (338)
T ss_pred             hcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCc----cHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHccCC--hhhCc
Confidence              236789999999999999997 9999864321    11122233333334456677889999999999999  88999


Q ss_pred             cHHHHHHHHHHHHH
Q 005680          568 RIAGVMKELDEVRK  581 (683)
Q Consensus       568 s~~eVl~~L~~l~~  581 (683)
                      |+.+|++.|+.+..
T Consensus       323 s~~el~~~l~~~~~  336 (338)
T cd05102         323 TFSALVEILGDLLQ  336 (338)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998764

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=5.2e-37  Score=334.72  Aligned_cols=223  Identities=24%  Similarity=0.409  Sum_probs=186.1

Q ss_pred             ccccccccCCceEEEEEEECCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecCCCC
Q 005680          340 ERFRLKCAGDWTNVYRGRLNHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMPNGN  414 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~ggs  414 (683)
                      .....||+|+||+||+|.|.|. ||||+++..    ...+.|..||.++++-+|.||+-++|+|.+ ...||+-+|.|-|
T Consensus       395 ~l~~rIGsGsFGtV~Rg~whGd-VAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~~AIiTqwCeGsS  473 (678)
T KOG0193|consen  395 LLGERIGSGSFGTVYRGRWHGD-VAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNPPLAIITQWCEGSS  473 (678)
T ss_pred             hccceeccccccceeecccccc-eEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCCceeeeehhccCch
Confidence            3445679999999999999774 999999822    234679999999999999999999999977 6689999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |+.+|+         .....|.....+.|+.|||.|+.|||.   ++|||||||..||+|.++++|||+||||+..    
T Consensus       474 LY~hlH---------v~etkfdm~~~idIAqQiaqGM~YLHA---K~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk~~w  541 (678)
T KOG0193|consen  474 LYTHLH---------VQETKFDMNTTIDIAQQIAQGMDYLHA---KNIIHRDLKSNNIFLHEDLKVKIGDFGLATVKTRW  541 (678)
T ss_pred             hhhhcc---------chhhhhhHHHHHHHHHHHHHhhhhhhh---hhhhhhhccccceEEccCCcEEEecccceeeeeee
Confidence            999996         345779999999999999999999999   8899999999999999999999999999853    


Q ss_pred             --------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC----CCCC
Q 005680          491 --------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG----NAGI  540 (683)
Q Consensus       491 --------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~----~~~~  540 (683)
                                                ..|++.+|||||||++|||+||..||.. ...    ...+..+-.+    ....
T Consensus       542 ~g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi-~~~----dqIifmVGrG~l~pd~s~  616 (678)
T KOG0193|consen  542 SGEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSI-QNR----DQIIFMVGRGYLMPDLSK  616 (678)
T ss_pred             ccccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCC-CCh----hheEEEecccccCccchh
Confidence                                      4689999999999999999999999973 211    1111111111    1112


Q ss_pred             CChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          541 WPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       541 ~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      ...+++.++.+|+..||.++  +.+||.+.+|+..|+.+.+.
T Consensus       617 ~~s~~pk~mk~Ll~~C~~~~--~~eRP~F~~il~~l~~l~~~  656 (678)
T KOG0193|consen  617 IRSNCPKAMKRLLSDCWKFD--REERPLFPQLLSKLEELLPS  656 (678)
T ss_pred             hhccCHHHHHHHHHHHHhcC--cccCccHHHHHHHHHHhhhc
Confidence            23467889999999999999  78999999999998888654

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=3.9e-36  Score=304.84  Aligned_cols=219  Identities=20%  Similarity=0.239  Sum_probs=172.7

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcCCCCC----HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLS----EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~----~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      .+..+|+|+||+||+|+.  +|+.||||++....+    .+-.++|+.+|++++|||+|.++.+|..  .++||+|||+.
T Consensus         6 ~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE~~dh   85 (396)
T KOG0593|consen    6 KLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFEYCDH   85 (396)
T ss_pred             hhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEeeecch
Confidence            344568999999999998  799999999973332    2457899999999999999999999966  78999999986


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      .-|..+-          .....++...+..|+.|++.|+.|+|+   .++|||||||+||||+.+|.+||||||+|+.  
T Consensus        86 TvL~eLe----------~~p~G~~~~~vk~~l~Q~l~ai~~cHk---~n~IHRDIKPENILit~~gvvKLCDFGFAR~L~  152 (396)
T KOG0593|consen   86 TVLHELE----------RYPNGVPSELVKKYLYQLLKAIHFCHK---NNCIHRDIKPENILITQNGVVKLCDFGFARTLS  152 (396)
T ss_pred             HHHHHHH----------hccCCCCHHHHHHHHHHHHHHhhhhhh---cCeecccCChhheEEecCCcEEeccchhhHhhc
Confidence            5444433          345678999999999999999999999   5699999999999999999999999999864  


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhh--hH-------HHHHHHhcCC
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMAL--DQ-------TTLMQVLDGN  537 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~--~~-------~~~~~ild~~  537 (683)
                                              ..|++.+||||+||++.||++|.|.|....+....  -.       .....+....
T Consensus       153 ~pgd~YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N  232 (396)
T KOG0593|consen  153 APGDNYTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFSSN  232 (396)
T ss_pred             CCcchhhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHHHhccC
Confidence                                    36899999999999999999999987543331100  00       0111111110


Q ss_pred             ------CCCC----------ChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          538 ------AGIW----------PLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       538 ------~~~~----------p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                            ..+-          -+.++.-+.+|+..||..|  |.+|++-++++.
T Consensus       233 ~~F~Gv~lP~~~~~epLe~k~p~~s~~~ld~~k~cL~~d--P~~R~sc~qll~  283 (396)
T KOG0593|consen  233 PFFHGVRLPEPEHPEPLERKYPKISNVLLDLLKKCLKMD--PDDRLSCEQLLH  283 (396)
T ss_pred             CceeeeecCCCCCccchhhhcccchHHHHHHHHHHhcCC--ccccccHHHHhc
Confidence                  0000          1245678999999999999  779999999874

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=6.4e-36  Score=319.73  Aligned_cols=211  Identities=22%  Similarity=0.269  Sum_probs=176.0

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      +++|+|+||.||+|..  +|+.||||++...     .....+.+|+.++.+++||||+++++++.+  ..||||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~   80 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCC
Confidence            3578999999999987  6899999998732     223467889999999999999999998865  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++.          ....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++.   
T Consensus        81 ~L~~~l~----------~~~~~~~~~~~~~~~qi~~~L~~lH~---~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~  147 (323)
T cd05571          81 ELFFHLS----------RERVFSEDRARFYGAEIVSALGYLHS---CDVVYRDLKLENLMLDKDGHIKITDFGLCKEGIS  147 (323)
T ss_pred             cHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHh---CCeEeCCCCHHHEEECCCCCEEEeeCCCCccccc
Confidence            9999983          44678999999999999999999999   6799999999999999999999999998752   


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE  548 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~  548 (683)
                                            ..++.++|||||||++|+|+||+.||.....      ......+......+|..++..
T Consensus       148 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~------~~~~~~~~~~~~~~p~~~~~~  221 (323)
T cd05571         148 DGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH------EKLFELILMEEIRFPRTLSPE  221 (323)
T ss_pred             CCCcccceecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCCCH------HHHHHHHHcCCCCCCCCCCHH
Confidence                                  2467899999999999999999999964221      112222222334566778899


Q ss_pred             HHHHHHHhhhcCCCccccc-----cHHHHHH
Q 005680          549 LAGIALKCLSADQDANRDL-----RIAGVMK  574 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RP-----s~~eVl~  574 (683)
                      +.+|+.+||+.|  |..||     ++.++++
T Consensus       222 ~~~li~~~L~~d--P~~R~~~~~~~~~~ll~  250 (323)
T cd05571         222 AKSLLAGLLKKD--PKQRLGGGPEDAKEIME  250 (323)
T ss_pred             HHHHHHHHccCC--HHHcCCCCCCCHHHHHc
Confidence            999999999999  88999     6777654

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-36  Score=325.92  Aligned_cols=225  Identities=22%  Similarity=0.380  Sum_probs=189.7

Q ss_pred             cccccCHHHHHHhhcCccccccccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccccc
Q 005680          322 AFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE  401 (683)
Q Consensus       322 ~~~~~s~~ei~~at~~F~~~~~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~  401 (683)
                      ..+++.|++|.        .+.-+|.|+.|.||+|++.++.||||+++.     .-..+|.-|++|+||||+.|.|+|..
T Consensus       117 e~WeiPFe~Is--------ELeWlGSGaQGAVF~Grl~netVAVKKV~e-----lkETdIKHLRkLkH~NII~FkGVCtq  183 (904)
T KOG4721|consen  117 ELWEIPFEEIS--------ELEWLGSGAQGAVFLGRLHNETVAVKKVRE-----LKETDIKHLRKLKHPNIITFKGVCTQ  183 (904)
T ss_pred             hhccCCHHHhh--------hhhhhccCcccceeeeeccCceehhHHHhh-----hhhhhHHHHHhccCcceeeEeeeecC
Confidence            45677788773        346789999999999999999999999862     22457888999999999999999987


Q ss_pred             --ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc
Q 005680          402 --LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV  479 (683)
Q Consensus       402 --~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~  479 (683)
                        .+|||||||+.|-|..+|          +...+++......+..+||.|+.|||.++   |||||||.-||||+.+..
T Consensus       184 sPcyCIiMEfCa~GqL~~VL----------ka~~~itp~llv~Wsk~IA~GM~YLH~hK---IIHRDLKSPNiLIs~~d~  250 (904)
T KOG4721|consen  184 SPCYCIIMEFCAQGQLYEVL----------KAGRPITPSLLVDWSKGIAGGMNYLHLHK---IIHRDLKSPNILISYDDV  250 (904)
T ss_pred             CceeEEeeeccccccHHHHH----------hccCccCHHHHHHHHHHhhhhhHHHHHhh---HhhhccCCCceEeeccce
Confidence              678999999999999999          56678888899999999999999999954   999999999999999999


Q ss_pred             EEEecCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHh-
Q 005680          480 AKISGLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVL-  534 (683)
Q Consensus       480 ~KL~DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~il-  534 (683)
                      +||+|||.++.                        ...+.|+|||||||||||||||.-||..+...     ..+..+- 
T Consensus       251 VKIsDFGTS~e~~~~STkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdss-----AIIwGVGs  325 (904)
T KOG4721|consen  251 VKISDFGTSKELSDKSTKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSS-----AIIWGVGS  325 (904)
T ss_pred             EEeccccchHhhhhhhhhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccchh-----eeEEeccC
Confidence            99999998754                        46789999999999999999999998754431     0011111 


Q ss_pred             cCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          535 DGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       535 d~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                      +....+.|..+|..+.-|+.+||+..  ||.||++.+++..|+-.
T Consensus       326 NsL~LpvPstcP~GfklL~Kqcw~sK--pRNRPSFrqil~HldIa  368 (904)
T KOG4721|consen  326 NSLHLPVPSTCPDGFKLLLKQCWNSK--PRNRPSFRQILLHLDIA  368 (904)
T ss_pred             CcccccCcccCchHHHHHHHHHHhcC--CCCCccHHHHHHHHhhc
Confidence            11345667889999999999999999  99999999999998644

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9.5e-36  Score=347.77  Aligned_cols=232  Identities=26%  Similarity=0.409  Sum_probs=200.1

Q ss_pred             cccccccCCceEEEEEEE---CCe----eEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEe
Q 005680          341 RFRLKCAGDWTNVYRGRL---NHA----SVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFE  408 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~---~g~----~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~E  408 (683)
                      ...++|+|.||.||.|.+   +|.    .||||.+....   ...+|.+|..+|+.++|||||+++|+|.+  ..+|++|
T Consensus       696 l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~~i~le  775 (1025)
T KOG1095|consen  696 LLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPPLILLE  775 (1025)
T ss_pred             eeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCcEEEeh
Confidence            356889999999999998   343    49999998443   34689999999999999999999999977  7899999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCc
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN  488 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla  488 (683)
                      ||.||+|..+|...+...   -....|+..+.+.|+.|||+|+.||++   +++|||||..+|+||+...++||+|||+|
T Consensus       776 yM~gGDL~sflr~~r~~~---~~~~~L~~~dLl~~a~dvA~G~~YLe~---~~fvHRDLAaRNCLL~~~r~VKIaDFGlA  849 (1025)
T KOG1095|consen  776 YMEGGDLLSFLRESRPAP---FQPSNLSMRDLLAFALDVAKGMNYLES---KHFVHRDLAARNCLLDERRVVKIADFGLA  849 (1025)
T ss_pred             hcccCcHHHHHHhccccc---CCCCCCCHHHHHHHHHHHhhhhHHHHh---CCCcCcchhhhheeecccCcEEEcccchh
Confidence            999999999997664322   236679999999999999999999999   77999999999999999999999999999


Q ss_pred             cc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCC
Q 005680          489 IC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGI  540 (683)
Q Consensus       489 ~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~  540 (683)
                      +.                           +.+|.|+|||||||+|||++| |..||+....     ...+..++.+.+.+
T Consensus       850 rDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n-----~~v~~~~~~ggRL~  924 (1025)
T KOG1095|consen  850 RDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSN-----FEVLLDVLEGGRLD  924 (1025)
T ss_pred             HhhhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcch-----HHHHHHHHhCCccC
Confidence            73                           458999999999999999999 9999986433     33444466666788


Q ss_pred             CChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhccc
Q 005680          541 WPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKADG  585 (683)
Q Consensus       541 ~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~~~  585 (683)
                      .|..|+..+.+|+..||+.+  |.+||++..+++.+..+......
T Consensus       925 ~P~~CP~~ly~lM~~CW~~~--pe~RP~F~~i~~q~~~i~~~~~~  967 (1025)
T KOG1095|consen  925 PPSYCPEKLYQLMLQCWKHD--PEDRPSFRTIVEQDPAISNAALG  967 (1025)
T ss_pred             CCCCCChHHHHHHHHHccCC--hhhCccHHHHHhhhhhhhhhhcc
Confidence            89999999999999999999  88999999999999888765544

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=3.2e-35  Score=314.53  Aligned_cols=211  Identities=23%  Similarity=0.276  Sum_probs=174.6

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      +++|+|+||.||++..  +|..||+|++...     .....+.+|+.++..++||||++++++|.+  ..||||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCC
Confidence            3578999999999997  6899999998722     223467789999999999999999998865  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|..++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..   
T Consensus        81 ~L~~~l~----------~~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~  147 (323)
T cd05595          81 ELFFHLS----------RERVFTEERARFYGAEIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGLCKEGIS  147 (323)
T ss_pred             cHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHEEEcCCCCEEecccHHhccccC
Confidence            9998883          44578999999999999999999999   6799999999999999999999999998642   


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE  548 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~  548 (683)
                                            ..++.++|||||||++|+|++|+.||.....     ......+. .....+|..+++.
T Consensus       148 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~-----~~~~~~~~-~~~~~~p~~~~~~  221 (323)
T cd05595         148 DGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH-----ERLFELIL-MEEIRFPRTLSPE  221 (323)
T ss_pred             CCCccccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCCH-----HHHHHHHh-cCCCCCCCCCCHH
Confidence                                  2467889999999999999999999864221     11112222 2233456678899


Q ss_pred             HHHHHHHhhhcCCCccccc-----cHHHHHH
Q 005680          549 LAGIALKCLSADQDANRDL-----RIAGVMK  574 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RP-----s~~eVl~  574 (683)
                      +.+|+.+||..|  |..||     ++.++++
T Consensus       222 ~~~li~~~L~~d--P~~R~~~~~~~~~~~l~  250 (323)
T cd05595         222 AKSLLAGLLKKD--PKQRLGGGPSDAKEVME  250 (323)
T ss_pred             HHHHHHHHccCC--HHHhCCCCCCCHHHHHc
Confidence            999999999999  88998     6777765

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=6.3e-36  Score=322.67  Aligned_cols=212  Identities=22%  Similarity=0.334  Sum_probs=184.4

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      +..+|+|+||.||||+.  +...||||.+.+.    .....+.+|++|+++++|||||.++++|+.  ..|+|+||+.| 
T Consensus         7 ~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte~a~g-   85 (808)
T KOG0597|consen    7 YEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTEYAVG-   85 (808)
T ss_pred             HHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEehhhhh-
Confidence            35679999999999997  6789999999732    233568999999999999999999999977  89999999985 


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|..+|          .....|+++.+..|+.+++.||.|||+   .+|+|||+||.||||+.+|++|+||||+|+.   
T Consensus        86 ~L~~il----------~~d~~lpEe~v~~~a~~LVsaL~yLhs---~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~  152 (808)
T KOG0597|consen   86 DLFTIL----------EQDGKLPEEQVRAIAYDLVSALYYLHS---NRILHRDMKPQNILLEKGGTLKLCDFGLARAMST  152 (808)
T ss_pred             hHHHHH----------HhccCCCHHHHHHHHHHHHHHHHHHHh---cCcccccCCcceeeecCCCceeechhhhhhhccc
Confidence            999999          566789999999999999999999999   6699999999999999999999999999864   


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE  548 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~  548 (683)
                                            ..|+..+|+||+|||+|||.+|+|||....-      ..+...+-.....||...+..
T Consensus       153 ~t~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~si------~~Lv~~I~~d~v~~p~~~S~~  226 (808)
T KOG0597|consen  153 NTSVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYARSI------TQLVKSILKDPVKPPSTASSS  226 (808)
T ss_pred             CceeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHHHH------HHHHHHHhcCCCCCcccccHH
Confidence                                  4688999999999999999999999975222      222333444556788899999


Q ss_pred             HHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          549 LAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      +.+++...|.+|  |..|.|..+++..
T Consensus       227 f~nfl~gLL~kd--P~~RltW~~Ll~H  251 (808)
T KOG0597|consen  227 FVNFLQGLLIKD--PAQRLTWTDLLGH  251 (808)
T ss_pred             HHHHHHHHhhcC--hhhcccHHHHhcC
Confidence            999999999999  8899999998754

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=4.9e-35  Score=311.30  Aligned_cols=222  Identities=20%  Similarity=0.362  Sum_probs=182.3

Q ss_pred             ccccccCCceEEEEEEE--CCe----eEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHA----SVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMP  411 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~----~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~  411 (683)
                      .+.+|+|+||.||+|.+  +|.    .||||.+....   ....+..|+.+++.++||||++++|+|.. ..++|++|++
T Consensus        12 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~~~~~v~e~~~   91 (316)
T cd05108          12 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMP   91 (316)
T ss_pred             eeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCCCceeeeecCC
Confidence            35678999999999987  343    49999987332   24678899999999999999999999966 7789999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      +|+|.+++..         ....+++..++.++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++. 
T Consensus        92 ~g~l~~~l~~---------~~~~~~~~~~~~~~~qi~~~L~~LH~---~~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~  159 (316)
T cd05108          92 FGCLLDYVRE---------HKDNIGSQYLLNWCVQIAKGMNYLEE---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLL  159 (316)
T ss_pred             CCCHHHHHHh---------ccccCCHHHHHHHHHHHHHHHHHHHh---cCeeccccchhheEecCCCcEEEccccccccc
Confidence            9999999952         23468899999999999999999999   7799999999999999999999999999853 


Q ss_pred             --------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHh-cCCCCCCC
Q 005680          491 --------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVL-DGNAGIWP  542 (683)
Q Consensus       491 --------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~il-d~~~~~~p  542 (683)
                                                ..++.++|||||||++|+|++ |.+||.....      ..+..++ .......+
T Consensus       160 ~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~~------~~~~~~~~~~~~~~~~  233 (316)
T cd05108         160 GADEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA------SEISSILEKGERLPQP  233 (316)
T ss_pred             cCCCcceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCH------HHHHHHHhCCCCCCCC
Confidence                                      235678999999999999998 9999865322      1122222 22333445


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      ..++..+.+++.+||..+  |..||++.+++..|..+.+..
T Consensus       234 ~~~~~~~~~li~~cl~~~--p~~Rps~~~l~~~l~~~~~~~  272 (316)
T cd05108         234 PICTIDVYMIMVKCWMID--ADSRPKFRELIIEFSKMARDP  272 (316)
T ss_pred             CCCCHHHHHHHHHHccCC--hhhCcCHHHHHHHHHHHHcCC
Confidence            567788999999999999  789999999999998886543

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=7.4e-35  Score=301.92  Aligned_cols=219  Identities=25%  Similarity=0.339  Sum_probs=181.1

Q ss_pred             ccccccCCceEEEEEEE-----CCeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          342 FRLKCAGDWTNVYRGRL-----NHASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~-----~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      ..++|+|+||.||+|.+     .+..||+|.++....   ...+.+|+.++.+++||||++++|++..  ..++||||++
T Consensus        10 ~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   89 (266)
T cd05064          10 ERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMIVTEYMS   89 (266)
T ss_pred             eeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEEEEEeCC
Confidence            35678999999999986     257899999984432   3468899999999999999999999865  7899999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      +|+|.+++..         ....+++..++.++.||+.||.|||+   .+++||||||+|||++.++.+|++|||.+.. 
T Consensus        90 ~~~L~~~l~~---------~~~~l~~~~~~~~~~~i~~al~~lH~---~~iiH~dikp~nili~~~~~~~l~dfg~~~~~  157 (266)
T cd05064          90 NGALDSFLRK---------HEGQLVAGQLMGMLPGLASGMKYLSE---MGYVHKGLAAHKVLVNSDLVCKISGFRRLQED  157 (266)
T ss_pred             CCcHHHHHHh---------CCCCCCHHHHHHHHHHHHHHHHHHHH---CCEeeccccHhhEEEcCCCcEEECCCcccccc
Confidence            9999999942         23468999999999999999999999   6799999999999999999999999997532 


Q ss_pred             -------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChh
Q 005680          491 -------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLD  544 (683)
Q Consensus       491 -------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~  544 (683)
                                               ..++.++|||||||++|++++ |.+||.....     ...+..+.+....+.|..
T Consensus       158 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~  232 (266)
T cd05064         158 KSEAIYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSG-----QDVIKAVEDGFRLPAPRN  232 (266)
T ss_pred             cccchhcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCH-----HHHHHHHHCCCCCCCCCC
Confidence                                     335778999999999999775 9999864322     122223333334455667


Q ss_pred             hHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          545 LAEELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                      ++..+.+++.+||+.+  |..||++.++++.|..+
T Consensus       233 ~~~~~~~li~~c~~~~--p~~RP~~~~i~~~l~~~  265 (266)
T cd05064         233 CPNLLHQLMLDCWQKE--RGERPRFSQIHSILSKM  265 (266)
T ss_pred             CCHHHHHHHHHHcCCC--chhCCCHHHHHHHHHhh
Confidence            8899999999999999  78999999999988764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.2e-35  Score=310.55  Aligned_cols=212  Identities=23%  Similarity=0.272  Sum_probs=176.1

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      .+.+|+|+||.||+|..  +|+.||||++...     .....+.+|+.++++++||||+++++++.+  ..|+||||+++
T Consensus         6 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   85 (291)
T cd05612           6 IKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLMEYVPG   85 (291)
T ss_pred             eeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEEeCCCC
Confidence            35678999999999998  5899999998621     223568899999999999999999999876  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..  
T Consensus        86 ~~L~~~~~----------~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~  152 (291)
T cd05612          86 GELFSYLR----------NSGRFSNSTGLFYASEIVCALEYLHS---KEIVYRDLKPENILLDKEGHIKLTDFGFAKKLR  152 (291)
T ss_pred             CCHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHeEECCCCCEEEEecCcchhcc
Confidence            99999993          44578999999999999999999999   6799999999999999999999999998753  


Q ss_pred             --------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHH
Q 005680          491 --------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELA  550 (683)
Q Consensus       491 --------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~  550 (683)
                                          ..++.++|||||||++|+|++|++||.....     ......+.. ....+|..++..+.
T Consensus       153 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~-----~~~~~~i~~-~~~~~~~~~~~~~~  226 (291)
T cd05612         153 DRTWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNP-----FGIYEKILA-GKLEFPRHLDLYAK  226 (291)
T ss_pred             CCcccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHHHh-CCcCCCccCCHHHH
Confidence                                2367889999999999999999999965321     112222222 23456667788999


Q ss_pred             HHHHHhhhcCCCcccccc-----HHHHHH
Q 005680          551 GIALKCLSADQDANRDLR-----IAGVMK  574 (683)
Q Consensus       551 ~Li~~CL~~dP~p~~RPs-----~~eVl~  574 (683)
                      +|+.+||+.|  |.+||+     +.+++.
T Consensus       227 ~li~~~l~~d--p~~R~~~~~~~~~~~l~  253 (291)
T cd05612         227 DLIKKLLVVD--RTRRLGNMKNGADDVKN  253 (291)
T ss_pred             HHHHHHcCCC--HHHccCCccCCHHHHhc
Confidence            9999999999  889995     666654

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.3e-35  Score=316.35  Aligned_cols=220  Identities=21%  Similarity=0.271  Sum_probs=174.8

Q ss_pred             ccccccccCCceEEEEEEE--CCeeEEEEEcCC----CCCHHHHHHHHHHHHhcCCCCccceeccccc----ceeEEEee
Q 005680          340 ERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE----LKCIVFEY  409 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----~~~LV~Ey  409 (683)
                      +....||+|.||.||+++.  +|+.||+|+++-    ........+||.||++|+|||||+|.+...+    .+|||+||
T Consensus       120 eki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYlVFeY  199 (560)
T KOG0600|consen  120 EKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYLVFEY  199 (560)
T ss_pred             HHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEEEEec
Confidence            3346678999999999998  799999999982    3345567899999999999999999998754    68999999


Q ss_pred             cCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCcc
Q 005680          410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNI  489 (683)
Q Consensus       410 ~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~  489 (683)
                      |+ -+|.-++.         ...-.++..++..|+.|++.||.|+|+   ++|+|||||.+|||||.+|.+||+|||||+
T Consensus       200 Md-hDL~GLl~---------~p~vkft~~qIKc~mkQLl~Gl~~cH~---~gvlHRDIK~SNiLidn~G~LKiaDFGLAr  266 (560)
T KOG0600|consen  200 MD-HDLSGLLS---------SPGVKFTEPQIKCYMKQLLEGLEYCHS---RGVLHRDIKGSNILIDNNGVLKIADFGLAR  266 (560)
T ss_pred             cc-chhhhhhc---------CCCcccChHHHHHHHHHHHHHHHHHhh---cCeeeccccccceEEcCCCCEEecccccee
Confidence            98 48888884         345679999999999999999999999   779999999999999999999999999997


Q ss_pred             c---------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh---------HHHHHHH
Q 005680          490 C---------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD---------QTTLMQV  533 (683)
Q Consensus       490 ~---------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~---------~~~~~~i  533 (683)
                      .                           ..|++++|+||.||||.||++|+|.|..-.....+.         .......
T Consensus       267 ~y~~~~~~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~kIfklcGSP~e~~W~~  346 (560)
T KOG0600|consen  267 FYTPSGSAPYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVEQLHKIFKLCGSPTEDYWPV  346 (560)
T ss_pred             eccCCCCcccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHHHHHHHHHHhCCCChhcccc
Confidence            4                           368999999999999999999999986432211010         0000010


Q ss_pred             hc-C----CC--CCCC-------hhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          534 LD-G----NA--GIWP-------LDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       534 ld-~----~~--~~~p-------~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .+ +    ..  ..+.       ...+....+|+..+|..|  |.+|.|+.+++.
T Consensus       347 ~kLP~~~~~kp~~~y~r~l~E~~~~~~~~~l~Ll~~lL~ld--P~kR~tA~~aL~  399 (560)
T KOG0600|consen  347 SKLPHATIFKPQQPYKRRLRETFKDFPASALDLLEKLLSLD--PDKRGTASSALQ  399 (560)
T ss_pred             ccCCcccccCCCCcccchHHHHhccCCHHHHHHHHHHhccC--ccccccHHHHhc
Confidence            00 0    00  0001       134667889999999999  779999988874

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.6e-35  Score=313.33  Aligned_cols=207  Identities=21%  Similarity=0.237  Sum_probs=172.0

Q ss_pred             cccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCc
Q 005680          345 KCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNL  415 (683)
Q Consensus       345 iG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL  415 (683)
                      +|+|+||.||+|..  ++..||||++..     ......+.+|+.++.+++|||||++++++.+  ..|+||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L   80 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGEL   80 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcH
Confidence            47899999999998  578999999862     2233567889999999999999999998865  78999999999999


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-----
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-----  490 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-----  490 (683)
                      .+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++.     
T Consensus        81 ~~~l~----------~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~  147 (312)
T cd05585          81 FHHLQ----------REGRFDLSRARFYTAELLCALENLHK---FNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDD  147 (312)
T ss_pred             HHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHh---CCeEeCCCCHHHeEECCCCcEEEEECcccccCccCC
Confidence            99993          44568999999999999999999999   7799999999999999999999999998753     


Q ss_pred             --------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHH
Q 005680          491 --------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELA  550 (683)
Q Consensus       491 --------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~  550 (683)
                                          ..++.++|||||||++|+|+||++||.....     ......++. ....+|..+++.+.
T Consensus       148 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~  221 (312)
T cd05585         148 DKTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENV-----NEMYRKILQ-EPLRFPDGFDRDAK  221 (312)
T ss_pred             CccccccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCCCH-----HHHHHHHHc-CCCCCCCcCCHHHH
Confidence                                2367899999999999999999999964221     111222222 33456667889999


Q ss_pred             HHHHHhhhcCCCccccccHHHH
Q 005680          551 GIALKCLSADQDANRDLRIAGV  572 (683)
Q Consensus       551 ~Li~~CL~~dP~p~~RPs~~eV  572 (683)
                      +|+.+||+.|  |.+||++..+
T Consensus       222 ~li~~~L~~d--p~~R~~~~~~  241 (312)
T cd05585         222 DLLIGLLSRD--PTRRLGYNGA  241 (312)
T ss_pred             HHHHHHcCCC--HHHcCCCCCH
Confidence            9999999999  8899865443

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=4.1e-35  Score=307.39  Aligned_cols=218  Identities=21%  Similarity=0.315  Sum_probs=176.2

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      .+++|+|+||.||+|..  +|..||||.+...     .....+.+|+.++..++|+||+++++++.+  ..++||||+++
T Consensus         5 ~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e~~~~   84 (285)
T cd05631           5 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLTIMNG   84 (285)
T ss_pred             EEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEEecCC
Confidence            46778999999999987  6899999998622     122457889999999999999999998865  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++...        ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..  
T Consensus        85 g~L~~~~~~~--------~~~~~~~~~~~~~~~qi~~~l~~lH~---~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~  153 (285)
T cd05631          85 GDLKFHIYNM--------GNPGFDEQRAIFYAAELCCGLEDLQR---ERIVYRDLKPENILLDDRGHIRISDLGLAVQIP  153 (285)
T ss_pred             CcHHHHHHhh--------CCCCCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCCCHHHEEECCCCCEEEeeCCCcEEcC
Confidence            9999888432        23468999999999999999999999   7799999999999999999999999998742  


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE  548 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~  548 (683)
                                            ..++.++|||||||++|+|++|++||......  .....+...+......++..++..
T Consensus       154 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~  231 (285)
T cd05631         154 EGETVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKER--VKREEVDRRVKEDQEEYSEKFSED  231 (285)
T ss_pred             CCCeecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcc--hhHHHHHHHhhcccccCCccCCHH
Confidence                                  24678999999999999999999999743221  011112222222333456678889


Q ss_pred             HHHHHHHhhhcCCCcccccc-----HHHHHH
Q 005680          549 LAGIALKCLSADQDANRDLR-----IAGVMK  574 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs-----~~eVl~  574 (683)
                      +.+|+.+||+.|  |..||+     +.++++
T Consensus       232 ~~~li~~~l~~~--P~~R~~~~~~~~~~~~~  260 (285)
T cd05631         232 AKSICRMLLTKN--PKERLGCRGNGAAGVKQ  260 (285)
T ss_pred             HHHHHHHHhhcC--HHHhcCCCCCCHHHHhc
Confidence            999999999999  889997     666664

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=2.2e-35  Score=305.46  Aligned_cols=216  Identities=31%  Similarity=0.531  Sum_probs=177.5

Q ss_pred             cccccCCceEEEEEEEC------CeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          343 RLKCAGDWTNVYRGRLN------HASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~------g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      +.+|.|+||.||+|.+.      +..|+||.+.....   .+.|.+|+.++++++||||++++|+|.+  ..++||||++
T Consensus         5 ~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~~~   84 (259)
T PF07714_consen    5 KQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEYCP   84 (259)
T ss_dssp             EEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE--T
T ss_pred             eEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccccccccccccccccccccccccccccc
Confidence            56789999999999996      68899999974333   4689999999999999999999999975  7899999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      +|+|.++|...        ....+++..+..|+.||+.||.|||+   .+|+|+||+|+|||++.++.+||+|||++.. 
T Consensus        85 ~g~L~~~L~~~--------~~~~~~~~~~~~i~~~i~~~l~~Lh~---~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~  153 (259)
T PF07714_consen   85 GGSLDDYLKSK--------NKEPLSEQQRLSIAIQIAEALSYLHS---NNIIHGNLSPSNILLDSNGQVKLSDFGLSRPI  153 (259)
T ss_dssp             TEBHHHHHHHT--------CTTTSBHHHHHHHHHHHHHHHHHHHH---TTEEEST-SGGGEEEETTTEEEEESTTTGEET
T ss_pred             ccccccccccc--------cccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccc
Confidence            99999999533        24679999999999999999999999   6799999999999999999999999998743 


Q ss_pred             --------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCCh
Q 005680          491 --------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPL  543 (683)
Q Consensus       491 --------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~  543 (683)
                                                ..++.++||||||+++|||+| |+.||....     .......+.+......+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~-----~~~~~~~~~~~~~~~~~~  228 (259)
T PF07714_consen  154 SEKSKYKNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDYD-----NEEIIEKLKQGQRLPIPD  228 (259)
T ss_dssp             TTSSSEEESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTSC-----HHHHHHHHHTTEETTSBT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccceecc
Confidence                                      236789999999999999999 778875431     222334445555556677


Q ss_pred             hhHHHHHHHHHHhhhcCCCccccccHHHHHHHH
Q 005680          544 DLAEELAGIALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       544 ~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                      .++..+.+++..||+.|  |..|||+.++++.|
T Consensus       229 ~~~~~~~~li~~C~~~~--p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  229 NCPKDIYSLIQQCWSHD--PEKRPSFQEILQEL  259 (259)
T ss_dssp             TSBHHHHHHHHHHT-SS--GGGS--HHHHHHHH
T ss_pred             chhHHHHHHHHHHcCCC--hhhCcCHHHHHhcC
Confidence            78999999999999999  88999999999876

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=4e-35  Score=314.57  Aligned_cols=212  Identities=22%  Similarity=0.278  Sum_probs=176.4

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      +++|+|+||.||++..  +|..||||++...     .....+.+|+.+++.++||||+++++++.+  ..||||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g   80 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGG   80 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCC
Confidence            3578999999999987  6899999998732     223567889999999999999999998865  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++.   
T Consensus        81 ~L~~~l~----------~~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~  147 (328)
T cd05593          81 ELFFHLS----------RERVFSEDRTRFYGAEIVSALDYLHS---GKIVYRDLKLENLMLDKDGHIKITDFGLCKEGIT  147 (328)
T ss_pred             CHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHh---CCeEecccCHHHeEECCCCcEEEecCcCCccCCC
Confidence            9999883          44579999999999999999999999   6799999999999999999999999998742   


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE  548 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~  548 (683)
                                            ..++.++|||||||++|+|++|+.||.....      ......+......+|..++..
T Consensus       148 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~------~~~~~~~~~~~~~~p~~~~~~  221 (328)
T cd05593         148 DAATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH------EKLFELILMEDIKFPRTLSAD  221 (328)
T ss_pred             cccccccccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCCCH------HHHHHHhccCCccCCCCCCHH
Confidence                                  2467899999999999999999999964221      111222222334566778899


Q ss_pred             HHHHHHHhhhcCCCccccc-----cHHHHHHH
Q 005680          549 LAGIALKCLSADQDANRDL-----RIAGVMKE  575 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RP-----s~~eVl~~  575 (683)
                      +.+|+.+||..|  |..||     ++.++++.
T Consensus       222 ~~~li~~~L~~d--P~~R~~~~~~~~~~il~h  251 (328)
T cd05593         222 AKSLLSGLLIKD--PNKRLGGGPDDAKEIMRH  251 (328)
T ss_pred             HHHHHHHHcCCC--HHHcCCCCCCCHHHHhcC
Confidence            999999999999  77997     77777654

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-35  Score=300.29  Aligned_cols=205  Identities=25%  Similarity=0.330  Sum_probs=178.5

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      ..+.+|.|+||.|.+++.  +|..+|+|++...     ...+...+|..+|+.+.||.+|++++.|.+  ..||||||++
T Consensus        48 ~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymvmeyv~  127 (355)
T KOG0616|consen   48 RLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMVMEYVP  127 (355)
T ss_pred             heeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEEEEeccC
Confidence            346779999999999998  6899999999832     234678899999999999999999999977  8899999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      ||.|..+|          .+.+.+++..++.++.||+.||.|||+   .+|++|||||+|||||.+|.+||+|||+|+. 
T Consensus       128 GGElFS~L----------rk~~rF~e~~arFYAAeivlAleylH~---~~iiYRDLKPENiLlD~~G~iKitDFGFAK~v  194 (355)
T KOG0616|consen  128 GGELFSYL----------RKSGRFSEPHARFYAAEIVLALEYLHS---LDIIYRDLKPENLLLDQNGHIKITDFGFAKRV  194 (355)
T ss_pred             CccHHHHH----------HhcCCCCchhHHHHHHHHHHHHHHHHh---cCeeeccCChHHeeeccCCcEEEEeccceEEe
Confidence            99999999          466789999999999999999999999   6799999999999999999999999999964 


Q ss_pred             ---------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHH
Q 005680          491 ---------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEEL  549 (683)
Q Consensus       491 ---------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l  549 (683)
                                           .+|+.++|+|||||++|||+.|.+||.....     -..+..++. ....+|...+..+
T Consensus       195 ~~rT~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~-----~~iY~KI~~-~~v~fP~~fs~~~  268 (355)
T KOG0616|consen  195 SGRTWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNP-----IQIYEKILE-GKVKFPSYFSSDA  268 (355)
T ss_pred             cCcEEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCCh-----HHHHHHHHh-CcccCCcccCHHH
Confidence                                 4688999999999999999999999975322     233444444 3456788899999


Q ss_pred             HHHHHHhhhcCCCcccc
Q 005680          550 AGIALKCLSADQDANRD  566 (683)
Q Consensus       550 ~~Li~~CL~~dP~p~~R  566 (683)
                      .+|+..+|+.|  -..|
T Consensus       269 kdLl~~LL~vD--~t~R  283 (355)
T KOG0616|consen  269 KDLLKKLLQVD--LTKR  283 (355)
T ss_pred             HHHHHHHHhhh--hHhh
Confidence            99999999999  5666

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=4.5e-35  Score=314.11  Aligned_cols=206  Identities=20%  Similarity=0.232  Sum_probs=172.9

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      .+.+|.|+||.||+|..  +|+.||||++...     .....+.+|+.++.+++|||||++++++.+  ..|+||||+++
T Consensus        23 ~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  102 (329)
T PTZ00263         23 GETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLLEFVVG  102 (329)
T ss_pred             EEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEEcCCCC
Confidence            35678999999999998  5789999998622     234568899999999999999999999865  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..  
T Consensus       103 ~~L~~~l~----------~~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~  169 (329)
T PTZ00263        103 GELFTHLR----------KAGRFPNDVAKFYHAELVLAFEYLHS---KDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVP  169 (329)
T ss_pred             ChHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHEEECCCCCEEEeeccCceEcC
Confidence            99999993          44578999999999999999999999   6799999999999999999999999998753  


Q ss_pred             --------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHH
Q 005680          491 --------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELA  550 (683)
Q Consensus       491 --------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~  550 (683)
                                          ..++.++|||||||++|+|++|.+||.....     ......+... ...+|..++..+.
T Consensus       170 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~-----~~~~~~i~~~-~~~~p~~~~~~~~  243 (329)
T PTZ00263        170 DRTFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTP-----FRIYEKILAG-RLKFPNWFDGRAR  243 (329)
T ss_pred             CCcceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCCH-----HHHHHHHhcC-CcCCCCCCCHHHH
Confidence                                2467899999999999999999999964221     1122233332 3445666788999


Q ss_pred             HHHHHhhhcCCCcccccc
Q 005680          551 GIALKCLSADQDANRDLR  568 (683)
Q Consensus       551 ~Li~~CL~~dP~p~~RPs  568 (683)
                      +|+.+||+.|  |.+||+
T Consensus       244 ~li~~~L~~d--P~~R~~  259 (329)
T PTZ00263        244 DLVKGLLQTD--HTKRLG  259 (329)
T ss_pred             HHHHHHhhcC--HHHcCC
Confidence            9999999999  889987

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=7.9e-35  Score=299.60  Aligned_cols=216  Identities=21%  Similarity=0.336  Sum_probs=180.0

Q ss_pred             ccccCCceEEEEEEE----CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecCCCC
Q 005680          344 LKCAGDWTNVYRGRL----NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMPNGN  414 (683)
Q Consensus       344 liG~G~fG~Vykg~~----~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~ggs  414 (683)
                      .+|+|+||.||+|.+    ++..||+|++....    ..+.+..|+.++..++||||++++|++.+ ..++||||+++|+
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~~   81 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICEAESWMLVMELAELGP   81 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCcEEEEecCCCCc
Confidence            368999999999975    46889999987322    23578899999999999999999999866 7789999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++.          ....+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||++..    
T Consensus        82 L~~~l~----------~~~~~~~~~~~~i~~qi~~al~~lH~---~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~  148 (257)
T cd05116          82 LNKFLQ----------KNKHVTEKNITELVHQVSMGMKYLEE---TNFVHRDLAARNVLLVTQHYAKISDFGLSKALGAD  148 (257)
T ss_pred             HHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccchhhEEEcCCCeEEECCCccccccCCC
Confidence            999993          44568999999999999999999999   6799999999999999999999999998742    


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhh
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDL  545 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~  545 (683)
                                              ..++.++|||||||++|||++ |.+||.....     ......+........|..+
T Consensus       149 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~-----~~~~~~i~~~~~~~~~~~~  223 (257)
T cd05116         149 ENYYKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKG-----NEVTQMIESGERMECPQRC  223 (257)
T ss_pred             CCeeeecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCH-----HHHHHHHHCCCCCCCCCCC
Confidence                                    124568999999999999998 9999864221     1222223333445567778


Q ss_pred             HHHHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          546 AEELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       546 ~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                      ++.+.+||.+||+.|  |..||++.+|...|+..
T Consensus       224 ~~~l~~li~~~~~~~--p~~Rp~~~~i~~~l~~~  255 (257)
T cd05116         224 PPEMYDLMKLCWTYG--VDERPGFAVVELRLRNY  255 (257)
T ss_pred             CHHHHHHHHHHhccC--chhCcCHHHHHHHHhcc
Confidence            999999999999999  88999999999998753

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-35  Score=325.43  Aligned_cols=223  Identities=23%  Similarity=0.417  Sum_probs=191.0

Q ss_pred             cccccCCceEEEEEEE--C-C---eeEEEEEcCC-C-C---CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEee
Q 005680          343 RLKCAGDWTNVYRGRL--N-H---ASVAIKTLNN-G-L---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEY  409 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~-g---~~VAvK~l~~-~-~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey  409 (683)
                      +.+|+|+||.||+|.+  . +   ..||||.... . .   ...+|.+|+++++.++|||||++||++..  +++||||+
T Consensus       163 kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~Pl~ivmEl  242 (474)
T KOG0194|consen  163 KKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEEPLMLVMEL  242 (474)
T ss_pred             ceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCccEEEEEe
Confidence            5779999999999998  2 2   2389999873 1 2   24679999999999999999999999865  89999999


Q ss_pred             cCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCcc
Q 005680          410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNI  489 (683)
Q Consensus       410 ~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~  489 (683)
                      |+||+|.++|..         ....++..+++.++.+.|.||+|||+   +++|||||-.+|+|++.++.+||+|||+++
T Consensus       243 ~~gGsL~~~L~k---------~~~~v~~~ek~~~~~~AA~Gl~YLh~---k~~IHRDIAARNcL~~~~~~vKISDFGLs~  310 (474)
T KOG0194|consen  243 CNGGSLDDYLKK---------NKKSLPTLEKLRFCYDAARGLEYLHS---KNCIHRDIAARNCLYSKKGVVKISDFGLSR  310 (474)
T ss_pred             cCCCcHHHHHHh---------CCCCCCHHHHHHHHHHHHhHHHHHHH---CCCcchhHhHHHheecCCCeEEeCcccccc
Confidence            999999999952         23369999999999999999999999   779999999999999999999999999986


Q ss_pred             c-------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHH-hcCCCCCCC
Q 005680          490 C-------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQV-LDGNAGIWP  542 (683)
Q Consensus       490 ~-------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~i-ld~~~~~~p  542 (683)
                      .                         +.|++++|||||||++||+++ |..||......     .....+ ..+.....|
T Consensus       311 ~~~~~~~~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~-----~v~~kI~~~~~r~~~~  385 (474)
T KOG0194|consen  311 AGSQYVMKKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMKNY-----EVKAKIVKNGYRMPIP  385 (474)
T ss_pred             CCcceeeccccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCCHH-----HHHHHHHhcCccCCCC
Confidence            5                         357899999999999999999 88888764432     223344 445666777


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhcc
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKAD  584 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~~  584 (683)
                      ...|..+..++.+||..+  |..||+|.++.+.|+.+.....
T Consensus       386 ~~~p~~~~~~~~~c~~~~--p~~R~tm~~i~~~l~~~~~~~~  425 (474)
T KOG0194|consen  386 SKTPKELAKVMKQCWKKD--PEDRPTMSTIKKKLEALEKKKE  425 (474)
T ss_pred             CCCHHHHHHHHHHhccCC--hhhccCHHHHHHHHHHHHhccc
Confidence            788999999999999999  8899999999999999987654

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.9e-35  Score=317.35  Aligned_cols=222  Identities=25%  Similarity=0.317  Sum_probs=185.7

Q ss_pred             ccccccccccCCceEEEEEEE--CCeeEEEEEcCCC-------CCHHHHHHHHHHHHhcC-CCCccceeccccc--ceeE
Q 005680          338 FSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-------LSEEDFQAKVSFLTAVR-HPHLVAVMGCCSE--LKCI  405 (683)
Q Consensus       338 F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-------~~~~~~~~Ev~iL~~l~-HpnIV~l~g~~~~--~~~L  405 (683)
                      .+...+.+|.|+||+||.|..  +|..||||++...       ...+.+.+|+.++++++ ||||++++.++..  ..|+
T Consensus        18 ~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~~~~i   97 (370)
T KOG0583|consen   18 KYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPTKIYI   97 (370)
T ss_pred             ceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCCeEEE
Confidence            345557789999999999987  7899999977632       12456778999999999 9999999999865  7899


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC-CcEEEec
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN-LVAKISG  484 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~-~~~KL~D  484 (683)
                      ||||+.||+|.+++.          ...++.+..+..++.|++.|+.|||+   ++|+||||||+|||+|.+ +++||+|
T Consensus        98 vmEy~~gGdL~~~i~----------~~g~l~E~~ar~~F~Qlisav~y~H~---~gi~HRDLK~ENilld~~~~~~Kl~D  164 (370)
T KOG0583|consen   98 VMEYCSGGDLFDYIV----------NKGRLKEDEARKYFRQLISAVAYCHS---RGIVHRDLKPENILLDGNEGNLKLSD  164 (370)
T ss_pred             EEEecCCccHHHHHH----------HcCCCChHHHHHHHHHHHHHHHHHHh---CCEeeCCCCHHHEEecCCCCCEEEec
Confidence            999999999999994          46789999999999999999999999   779999999999999999 9999999


Q ss_pred             CCCccc-------------------------cC-C-CcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCC
Q 005680          485 LGLNIC-------------------------DQ-L-NVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGN  537 (683)
Q Consensus       485 FGla~~-------------------------~~-~-t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~  537 (683)
                      ||++..                         .. | +.++||||+||+||-|++|+.||.....      ..+...+...
T Consensus       165 FG~s~~~~~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~~------~~l~~ki~~~  238 (370)
T KOG0583|consen  165 FGLSAISPGEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSNV------PNLYRKIRKG  238 (370)
T ss_pred             cccccccCCCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCccH------HHHHHHHhcC
Confidence            999853                         12 4 5899999999999999999999986221      1122224444


Q ss_pred             CCCCChhh-HHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHH
Q 005680          538 AGIWPLDL-AEELAGIALKCLSADQDANRDLRIAGVMKELDEVRK  581 (683)
Q Consensus       538 ~~~~p~~~-~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~  581 (683)
                      ...+|..+ +.++..|+.+||..|  |..|+|+.+++ .-.-++.
T Consensus       239 ~~~~p~~~~S~~~~~Li~~mL~~~--P~~R~t~~~i~-~h~w~~~  280 (370)
T KOG0583|consen  239 EFKIPSYLLSPEARSLIEKMLVPD--PSTRITLLEIL-EHPWFQK  280 (370)
T ss_pred             CccCCCCcCCHHHHHHHHHHcCCC--cccCCCHHHHh-hChhhcc
Confidence            55667677 999999999999999  77999999998 5555554

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=2e-34  Score=297.70  Aligned_cols=219  Identities=21%  Similarity=0.394  Sum_probs=182.4

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC-CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCchh
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRD  417 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~  417 (683)
                      +.+|+|+||.||+|.+  ++..||+|.+... .....+.+|+.++..++||||++++++|..  ..++||||+++++|.+
T Consensus        12 ~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~   91 (263)
T cd05052          12 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD   91 (263)
T ss_pred             eecCCcccceEEEEEEecCCceEEEEEecCCchHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEeCCCCcHHH
Confidence            4567899999999998  5789999998733 234678999999999999999999999865  7889999999999999


Q ss_pred             hhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-------
Q 005680          418 KLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-------  490 (683)
Q Consensus       418 ~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-------  490 (683)
                      ++...        ....+++..++.++.|++.||.|||+   .+++||||||+|||++.++.+||+|||++..       
T Consensus        92 ~~~~~--------~~~~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~~  160 (263)
T cd05052          92 YLREC--------NRQEVNAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT  160 (263)
T ss_pred             HHHhC--------CCCCCCHHHHHHHHHHHHHHHHHHHh---CCEeecccCcceEEEcCCCcEEeCCCccccccccceee
Confidence            98432        23568999999999999999999999   6799999999999999999999999998643       


Q ss_pred             -------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHH
Q 005680          491 -------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELA  550 (683)
Q Consensus       491 -------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~  550 (683)
                                         ..++.++|||||||++|+|++ |.+||.....     ......+........|..++..+.
T Consensus       161 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  235 (263)
T cd05052         161 AHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL-----SQVYELLEKGYRMERPEGCPPKVY  235 (263)
T ss_pred             ccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCH-----HHHHHHHHCCCCCCCCCCCCHHHH
Confidence                               235678999999999999998 9999864221     111222233334556667889999


Q ss_pred             HHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          551 GIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       551 ~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                      +++.+||..|  |..|||+.++++.|+.+
T Consensus       236 ~li~~cl~~~--p~~Rp~~~~l~~~l~~~  262 (263)
T cd05052         236 ELMRACWQWN--PSDRPSFAEIHQAFETM  262 (263)
T ss_pred             HHHHHHccCC--cccCCCHHHHHHHHHhh
Confidence            9999999999  88999999999999865

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=9.9e-35  Score=306.79  Aligned_cols=230  Identities=23%  Similarity=0.372  Sum_probs=176.0

Q ss_pred             cccccCCceEEEEEEEC------------------CeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc
Q 005680          343 RLKCAGDWTNVYRGRLN------------------HASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE  401 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~------------------g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~  401 (683)
                      +.+|+|+||.||+|.+.                  +..||||.+.....   ...|.+|+.++.+++|||||++++++.+
T Consensus        11 ~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~   90 (304)
T cd05096          11 EKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRLLGVCVD   90 (304)
T ss_pred             eEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEec
Confidence            46789999999999752                  34699999874332   3568899999999999999999999865


Q ss_pred             --ceeEEEeecCCCCchhhhhhccccccc---------ccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCC
Q 005680          402 --LKCIVFEYMPNGNLRDKLFTSQRNYKN---------CSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPS  470 (683)
Q Consensus       402 --~~~LV~Ey~~ggsL~~~L~~~~~~~~~---------~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~  470 (683)
                        ..+|||||+++|+|.+++.........         ......+++..+..|+.||+.||.|||+   .+|+||||||+
T Consensus        91 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~---~~ivH~dlkp~  167 (304)
T cd05096          91 EDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSS---LNFVHRDLATR  167 (304)
T ss_pred             CCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH---CCccccCcchh
Confidence              789999999999999998543210000         0123468999999999999999999999   67999999999


Q ss_pred             cccccCCCcEEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh--CCCCchhhHH
Q 005680          471 SILLDRNLVAKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT--GRNWAGLVEK  521 (683)
Q Consensus       471 NILld~~~~~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt--G~~Pf~~~~~  521 (683)
                      |||++.++.+||+|||+++.                           ..++.++|||||||++|+|++  |..||.....
T Consensus       168 Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~  247 (304)
T cd05096         168 NCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQPYGELTD  247 (304)
T ss_pred             heEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCCCCCcCCH
Confidence            99999999999999998742                           246788999999999999987  4567754322


Q ss_pred             HhhhhH--HHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHH
Q 005680          522 AMALDQ--TTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELD  577 (683)
Q Consensus       522 ~~~~~~--~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~  577 (683)
                      ......  ..+...........|+.++..+.+|+.+||+.|  |..|||+.+|...|+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~--p~~RPs~~~i~~~l~  303 (304)
T cd05096         248 EQVIENAGEFFRDQGRQVYLFRPPPCPQGLYELMLQCWSRD--CRERPSFSDIHAFLT  303 (304)
T ss_pred             HHHHHHHHHHhhhccccccccCCCCCCHHHHHHHHHHccCC--chhCcCHHHHHHHHh
Confidence            110100  001111111122334567889999999999999  889999999988875

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=2e-34  Score=307.53  Aligned_cols=205  Identities=24%  Similarity=0.315  Sum_probs=170.9

Q ss_pred             ccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEEeecCCC
Q 005680          344 LKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       344 liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      ++|.|+||.||+|.+  ++..||||++...     .....+..|..++..+ +||||+++++++.+  ..|+||||++||
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~   81 (318)
T cd05570           2 VLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNGG   81 (318)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCCC
Confidence            578999999999998  5789999998722     2335677899999888 79999999998865  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++.   
T Consensus        82 ~L~~~~~----------~~~~l~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~  148 (318)
T cd05570          82 DLMFHIQ----------RSGRFDEPRARFYAAEIVLGLQFLHE---RGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGIL  148 (318)
T ss_pred             CHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHh---CCeEccCCCHHHeEECCCCcEEecccCCCeecCc
Confidence            9999883          44579999999999999999999999   7799999999999999999999999998742   


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE  548 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~  548 (683)
                                            ..++.++|||||||++|+|++|+.||.....      ..+...+......+|..++..
T Consensus       149 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~------~~~~~~i~~~~~~~~~~~~~~  222 (318)
T cd05570         149 GGVTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDE------DELFQSILEDEVRYPRWLSKE  222 (318)
T ss_pred             CCCcccceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCH------HHHHHHHHcCCCCCCCcCCHH
Confidence                                  2467899999999999999999999964322      111122222333456678899


Q ss_pred             HHHHHHHhhhcCCCccccccH
Q 005680          549 LAGIALKCLSADQDANRDLRI  569 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs~  569 (683)
                      +.+|+.+||..|  |..|||+
T Consensus       223 ~~~li~~~l~~d--P~~R~s~  241 (318)
T cd05570         223 AKSILKSFLTKN--PEKRLGC  241 (318)
T ss_pred             HHHHHHHHccCC--HHHcCCC
Confidence            999999999999  8899998

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=1.1e-34  Score=317.24  Aligned_cols=228  Identities=22%  Similarity=0.321  Sum_probs=179.7

Q ss_pred             ccccccCCceEEEEEEE-------CCeeEEEEEcCCCC---CHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEEe
Q 005680          342 FRLKCAGDWTNVYRGRL-------NHASVAIKTLNNGL---SEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVFE  408 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~-------~g~~VAvK~l~~~~---~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~E  408 (683)
                      .+.+|+|+||.||+|.+       ++..||||+++...   ..+.+.+|+.+|..+ +|||||+++|+|.+  ..++|||
T Consensus        40 ~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~~~~lv~E  119 (375)
T cd05104          40 GKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVGGPTLVITE  119 (375)
T ss_pred             hheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCCcceeeeh
Confidence            36778999999999974       34689999997332   235688999999999 89999999999966  7899999


Q ss_pred             ecCCCCchhhhhhcccccc-------------------------------------------------------------
Q 005680          409 YMPNGNLRDKLFTSQRNYK-------------------------------------------------------------  427 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~-------------------------------------------------------------  427 (683)
                      |+++|+|.+++........                                                             
T Consensus       120 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (375)
T cd05104         120 YCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSGSYIDQDV  199 (375)
T ss_pred             hccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccccccceeccccc
Confidence            9999999999964321000                                                             


Q ss_pred             ----cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-------------
Q 005680          428 ----NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-------------  490 (683)
Q Consensus       428 ----~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-------------  490 (683)
                          .......+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++.             
T Consensus       200 ~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~  276 (375)
T cd05104         200 TSEILEEDELALDTEDLLSFSYQVAKGMSFLAS---KNCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVKGNA  276 (375)
T ss_pred             HHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCchhhEEEECCCcEEEecCccceeccCcccccccCCC
Confidence                00012358999999999999999999999   6799999999999999999999999998742             


Q ss_pred             --------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHH
Q 005680          491 --------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALK  555 (683)
Q Consensus       491 --------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~  555 (683)
                                    ..++.++|||||||++|+|++ |.+||.....    .......+........|...+.++.+|+.+
T Consensus       277 ~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  352 (375)
T cd05104         277 RLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPV----DSKFYKMIKEGYRMLSPECAPSEMYDIMKS  352 (375)
T ss_pred             CCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCc----hHHHHHHHHhCccCCCCCCCCHHHHHHHHH
Confidence                          246789999999999999998 8888864321    111112222223333445567899999999


Q ss_pred             hhhcCCCccccccHHHHHHHHHH
Q 005680          556 CLSADQDANRDLRIAGVMKELDE  578 (683)
Q Consensus       556 CL~~dP~p~~RPs~~eVl~~L~~  578 (683)
                      ||+.|  |..|||+.+|++.|+.
T Consensus       353 cl~~d--P~~RPs~~eil~~l~~  373 (375)
T cd05104         353 CWDAD--PLKRPTFKQIVQLIEQ  373 (375)
T ss_pred             HccCC--hhHCcCHHHHHHHHHh
Confidence            99999  8899999999999985

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=100.00  E-value=7.2e-36  Score=332.09  Aligned_cols=244  Identities=26%  Similarity=0.434  Sum_probs=209.0

Q ss_pred             ccCHHHHHHhhcCcc--------ccccccccCCceEEEEEEE--CC---eeEEEEEcCCCCC---HHHHHHHHHHHHhcC
Q 005680          325 EYAAEDIRLATEDFS--------ERFRLKCAGDWTNVYRGRL--NH---ASVAIKTLNNGLS---EEDFQAKVSFLTAVR  388 (683)
Q Consensus       325 ~~s~~ei~~at~~F~--------~~~~liG~G~fG~Vykg~~--~g---~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~  388 (683)
                      .++|++-..|...|.        ...++||.|.||.||+|++  .|   ..||||.|+....   ..+|+.|+.||.+++
T Consensus       609 P~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFd  688 (996)
T KOG0196|consen  609 PHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFD  688 (996)
T ss_pred             CccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCC
Confidence            456665555544443        3347899999999999998  33   6799999995443   467999999999999


Q ss_pred             CCCccceeccccc--ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEecc
Q 005680          389 HPHLVAVMGCCSE--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGS  466 (683)
Q Consensus       389 HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrD  466 (683)
                      ||||++|.|+...  ..+||+|||+||+|+.+|+..         .+.+++-+...++.+|+.|+.||-+   .++||||
T Consensus       689 HPNIIrLEGVVTks~PvMIiTEyMENGsLDsFLR~~---------DGqftviQLVgMLrGIAsGMkYLsd---m~YVHRD  756 (996)
T KOG0196|consen  689 HPNIIRLEGVVTKSKPVMIITEYMENGSLDSFLRQN---------DGQFTVIQLVGMLRGIASGMKYLSD---MNYVHRD  756 (996)
T ss_pred             CCcEEEEEEEEecCceeEEEhhhhhCCcHHHHHhhc---------CCceEeehHHHHHHHHHHHhHHHhh---cCchhhh
Confidence            9999999999966  789999999999999999643         4569999999999999999999999   7799999


Q ss_pred             CCCCcccccCCCcEEEecCCCccc----------------------------cCCCcccccccHHHHHHHHhh-CCCCch
Q 005680          467 LTPSSILLDRNLVAKISGLGLNIC----------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAG  517 (683)
Q Consensus       467 LKP~NILld~~~~~KL~DFGla~~----------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~  517 (683)
                      |...|||++.+..+|++||||++.                            ..+|.+||||||||++||.++ |..||-
T Consensus       757 LAARNILVNsnLvCKVsDFGLSRvledd~~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYW  836 (996)
T KOG0196|consen  757 LAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYW  836 (996)
T ss_pred             hhhhheeeccceEEEeccccceeecccCCCccccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCccc
Confidence            999999999999999999999964                            357899999999999999888 888875


Q ss_pred             hhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhccccc
Q 005680          518 LVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKADGLA  587 (683)
Q Consensus       518 ~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~~~~~  587 (683)
                      ..     .+++.+..+-++.+.+.|.+||..|..|++.||++|  ...||.+.+++..|+++.+...++.
T Consensus       837 dm-----SNQdVIkaIe~gyRLPpPmDCP~aL~qLMldCWqkd--R~~RP~F~qiV~~lDklIrnP~SLk  899 (996)
T KOG0196|consen  837 DM-----SNQDVIKAIEQGYRLPPPMDCPAALYQLMLDCWQKD--RNRRPKFAQIVSTLDKLIRNPNSLK  899 (996)
T ss_pred             cc-----chHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHH--hhcCCCHHHHHHHHHHHhcCchhhc
Confidence            32     446667788888888999999999999999999999  7899999999999999987655443

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=2.1e-34  Score=296.01  Aligned_cols=218  Identities=25%  Similarity=0.375  Sum_probs=182.6

Q ss_pred             cccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccccc---ceeEEEeecCCCCchhhh
Q 005680          343 RLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE---LKCIVFEYMPNGNLRDKL  419 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~---~~~LV~Ey~~ggsL~~~L  419 (683)
                      +++|+|+||.||+|...|..||+|.+......+.+.+|+.++++++|+||+++++++..   ..++||||+++|+|.+++
T Consensus        12 ~~lg~g~~~~v~~~~~~~~~~~~k~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~   91 (256)
T cd05082          12 QTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYL   91 (256)
T ss_pred             eeecccCCCeEEEEEEcCCcEEEEEeCCCchHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEECCCCCcHHHHH
Confidence            56789999999999999999999999866666789999999999999999999997632   689999999999999998


Q ss_pred             hhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---------
Q 005680          420 FTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---------  490 (683)
Q Consensus       420 ~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---------  490 (683)
                      ...        ....+++..+..++.||+.||.|||+   .+|+||||||+||+++.++.+||+|||++..         
T Consensus        92 ~~~--------~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~  160 (256)
T cd05082          92 RSR--------GRSVLGGDCLLKFSLDVCEAMEYLEA---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGK  160 (256)
T ss_pred             Hhc--------CCCCCCHHHHHHHHHHHHHHHHHHHh---CCEeccccchheEEEcCCCcEEecCCccceeccccCCCCc
Confidence            532        23458999999999999999999999   6799999999999999999999999998753         


Q ss_pred             -------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHh
Q 005680          491 -------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKC  556 (683)
Q Consensus       491 -------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~C  556 (683)
                                   ..++.++|||||||++|+|++ |+.||.....     ......+........+..+++.+.+++.+|
T Consensus       161 ~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  235 (256)
T cd05082         161 LPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL-----KDVVPRVEKGYKMDAPDGCPPVVYDVMKQC  235 (256)
T ss_pred             cceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCCH-----HHHHHHHhcCCCCCCCCCCCHHHHHHHHHH
Confidence                         246778999999999999998 9999864221     111122222233445567788999999999


Q ss_pred             hhcCCCccccccHHHHHHHHHH
Q 005680          557 LSADQDANRDLRIAGVMKELDE  578 (683)
Q Consensus       557 L~~dP~p~~RPs~~eVl~~L~~  578 (683)
                      |+.+  |..|||+.++++.|+.
T Consensus       236 l~~~--p~~Rpt~~~l~~~l~~  255 (256)
T cd05082         236 WHLD--AATRPSFLQLREQLEH  255 (256)
T ss_pred             hcCC--hhhCcCHHHHHHHHhc
Confidence            9999  8899999999998875

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=1.6e-34  Score=295.86  Aligned_cols=215  Identities=24%  Similarity=0.391  Sum_probs=177.9

Q ss_pred             ccccCCceEEEEEEE--CCeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCch
Q 005680          344 LKCAGDWTNVYRGRL--NHASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLR  416 (683)
Q Consensus       344 liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~  416 (683)
                      .+|.|+||.||+|.+  +|+.||+|.+.....   ...+.+|+.+++.++||||++++++|.+  ..++||||+++++|.
T Consensus         2 ~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   81 (252)
T cd05084           2 RIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFL   81 (252)
T ss_pred             ccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcHH
Confidence            468999999999998  689999998863322   3568999999999999999999999865  789999999999999


Q ss_pred             hhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc------
Q 005680          417 DKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC------  490 (683)
Q Consensus       417 ~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~------  490 (683)
                      +++..         ....+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||++..      
T Consensus        82 ~~~~~---------~~~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~  149 (252)
T cd05084          82 TFLRT---------EGPRLKVKELIQMVENAAAGMEYLES---KHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVY  149 (252)
T ss_pred             HHHHh---------CCCCCCHHHHHHHHHHHHHHHHHHHh---CCccccccchheEEEcCCCcEEECccccCcccccccc
Confidence            99842         23468999999999999999999999   6799999999999999999999999998642      


Q ss_pred             ---------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHH
Q 005680          491 ---------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE  548 (683)
Q Consensus       491 ---------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~  548 (683)
                                           ..++.++|||||||++|+|++ |.+||.....     ......+........+..++..
T Consensus       150 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  224 (252)
T cd05084         150 ASTGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSN-----QQTREAIEQGVRLPCPELCPDA  224 (252)
T ss_pred             cccCCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCH-----HHHHHHHHcCCCCCCcccCCHH
Confidence                                 234667999999999999998 8888864322     1111222222334556677889


Q ss_pred             HHHHHHHhhhcCCCccccccHHHHHHHHH
Q 005680          549 LAGIALKCLSADQDANRDLRIAGVMKELD  577 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs~~eVl~~L~  577 (683)
                      +.+|+.+||+.+  |..|||+.+|++.|+
T Consensus       225 ~~~li~~~l~~~--p~~Rps~~~~~~~l~  251 (252)
T cd05084         225 VYRLMERCWEYD--PGQRPSFSTVHQELQ  251 (252)
T ss_pred             HHHHHHHHcCCC--hhhCcCHHHHHHHHh
Confidence            999999999999  889999999998875

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=2.5e-34  Score=295.42  Aligned_cols=215  Identities=23%  Similarity=0.388  Sum_probs=179.0

Q ss_pred             cccccCCceEEEEEEE-CCeeEEEEEcCC-CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCchhh
Q 005680          343 RLKCAGDWTNVYRGRL-NHASVAIKTLNN-GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRDK  418 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~-~g~~VAvK~l~~-~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~~  418 (683)
                      +.+|+|+||.||++.+ ++..||+|.+.. ......+.+|+.++++++||||++++++|.+  ..++||||+++|+|.++
T Consensus        10 ~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~~~L~~~   89 (256)
T cd05114          10 KELGSGQFGVVHLGKWRAQIKVAIKAINEGAMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMENGCLLNY   89 (256)
T ss_pred             eEecCCcCceEEEEEeccCceEEEEecccCCccHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcCCCCcHHHH
Confidence            5678999999999998 456899999873 3446789999999999999999999999866  78999999999999999


Q ss_pred             hhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--------
Q 005680          419 LFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--------  490 (683)
Q Consensus       419 L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--------  490 (683)
                      +...         ...+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||+++.        
T Consensus        90 ~~~~---------~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~~  157 (256)
T cd05114          90 LRQR---------QGKLSKDMLLSMCQDVCEGMEYLER---NSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTS  157 (256)
T ss_pred             HHhC---------ccCCCHHHHHHHHHHHHHHHHHHHH---CCccccccCcceEEEcCCCeEEECCCCCccccCCCceec
Confidence            8522         2458999999999999999999999   6799999999999999999999999998742        


Q ss_pred             ------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHH
Q 005680          491 ------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAG  551 (683)
Q Consensus       491 ------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~  551 (683)
                                        ..++.++||||||+++|+|++ |++||.....     ...+..+........|...+..+.+
T Consensus       158 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~  232 (256)
T cd05114         158 SSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSN-----YEVVEMISRGFRLYRPKLASMTVYE  232 (256)
T ss_pred             cCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCH-----HHHHHHHHCCCCCCCCCCCCHHHHH
Confidence                              234678999999999999999 8999864321     2223333333333445556788999


Q ss_pred             HHHHhhhcCCCccccccHHHHHHHH
Q 005680          552 IALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       552 Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                      ++.+||..+  |..||++.+++..|
T Consensus       233 li~~c~~~~--p~~Rps~~~l~~~l  255 (256)
T cd05114         233 VMYSCWHEK--PEGRPTFAELLRAI  255 (256)
T ss_pred             HHHHHccCC--cccCcCHHHHHHhh
Confidence            999999999  78999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=2.5e-34  Score=296.73  Aligned_cols=216  Identities=20%  Similarity=0.361  Sum_probs=180.0

Q ss_pred             cccCCceEEEEEEE----CCeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecCCCCch
Q 005680          345 KCAGDWTNVYRGRL----NHASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMPNGNLR  416 (683)
Q Consensus       345 iG~G~fG~Vykg~~----~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~ggsL~  416 (683)
                      +|+|+||.||+|.+    ++..||+|++.....   .+.+.+|+.++++++||||++++++|.. ..++||||+++|+|.
T Consensus         3 ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~lv~e~~~~~~L~   82 (257)
T cd05115           3 LGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCEAEALMLVMEMASGGPLN   82 (257)
T ss_pred             cCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcCCCeEEEEEeCCCCCHH
Confidence            57899999999986    245799999974322   3568899999999999999999999865 789999999999999


Q ss_pred             hhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc------
Q 005680          417 DKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC------  490 (683)
Q Consensus       417 ~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~------  490 (683)
                      +++..         ....+++..++.++.||+.||.|||+   .+++||||||+|||++.++.+||+|||++..      
T Consensus        83 ~~l~~---------~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~  150 (257)
T cd05115          83 KFLSG---------KKDEITVSNVVELMHQVSMGMKYLEG---KNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDS  150 (257)
T ss_pred             HHHHh---------CCCCCCHHHHHHHHHHHHHHHHHHHh---cCeeecccchheEEEcCCCcEEeccCCccccccCCcc
Confidence            99842         24568999999999999999999999   6799999999999999999999999998742      


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAE  547 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~  547 (683)
                                            ..++.++|||||||++|+|++ |.+||.....     ......+........|..+++
T Consensus       151 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  225 (257)
T cd05115         151 YYKARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKG-----PEVMSFIEQGKRLDCPAECPP  225 (257)
T ss_pred             ceeccCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCH-----HHHHHHHHCCCCCCCCCCCCH
Confidence                                  234668999999999999996 9999864322     122223333444566777889


Q ss_pred             HHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          548 ELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       548 ~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                      ++.+++.+||..+  |.+||++.+|++.|+.+
T Consensus       226 ~l~~li~~c~~~~--~~~Rp~~~~i~~~l~~~  255 (257)
T cd05115         226 EMYALMKDCWIYK--WEDRPNFAKVEERMRTY  255 (257)
T ss_pred             HHHHHHHHHcCCC--hhhCcCHHHHHHHHhhh
Confidence            9999999999999  78999999999988764

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-33  Score=297.39  Aligned_cols=284  Identities=20%  Similarity=0.279  Sum_probs=219.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhccccccccccCHHHHHHhhcC
Q 005680          258 KLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFCKEKDAIGMVIRSSELSCAFREYAAEDIRLATED  337 (683)
Q Consensus       258 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~e~l~~~r~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~s~~ei~~at~~  337 (683)
                      .++++-...+.....++....+.+++..|.++|++.|....|+++.....+.           +.|...     .. .++
T Consensus       401 tlaEYhEqeEIfKLRlgHLkKEEaeiqaElERLErvrnlHiRELKRi~NEdn-----------SQFkDH-----pt-Ln~  463 (775)
T KOG1151|consen  401 TLAEYHEQEEIFKLRLGHLKKEEAEIQAELERLERVRNLHIRELKRIHNEDN-----------SQFKDH-----PT-LND  463 (775)
T ss_pred             cHHHHHhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccch-----------hhhccC-----cc-hHH
Confidence            3466777777777778888888899999999999999988888775543321           111111     11 122


Q ss_pred             ccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC---------CHHHHHHHHHHHHhcCCCCccceecccc---cce
Q 005680          338 FSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL---------SEEDFQAKVSFLTAVRHPHLVAVMGCCS---ELK  403 (683)
Q Consensus       338 F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~---------~~~~~~~Ev~iL~~l~HpnIV~l~g~~~---~~~  403 (683)
                      -+-.+.++|+|||+.||++.+  ..+.||||+-.-..         ..+...+|..|.+.|.||.||++|++|.   +.+
T Consensus       464 RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtdsF  543 (775)
T KOG1151|consen  464 RYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDSF  543 (775)
T ss_pred             HHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccccc
Confidence            223456889999999999997  67899999865111         1245778999999999999999999993   388


Q ss_pred             eEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccccc---CCCcE
Q 005680          404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD---RNLVA  480 (683)
Q Consensus       404 ~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld---~~~~~  480 (683)
                      |-|+|||+|.+|.-+|          +....+++..+..|+.||+.||.||..-. .||||.||||.||||-   ..|.+
T Consensus       544 CTVLEYceGNDLDFYL----------KQhklmSEKEARSIiMQiVnAL~YLNEik-pPIIHYDLKPgNILLv~GtacGeI  612 (775)
T KOG1151|consen  544 CTVLEYCEGNDLDFYL----------KQHKLMSEKEARSIIMQIVNALKYLNEIK-PPIIHYDLKPGNILLVNGTACGEI  612 (775)
T ss_pred             eeeeeecCCCchhHHH----------HhhhhhhHHHHHHHHHHHHHHHHHHhccC-CCeeeeccCCccEEEecCccccee
Confidence            9999999999999999          56778999999999999999999999977 7899999999999994   35889


Q ss_pred             EEecCCCccc------------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhh
Q 005680          481 KISGLGLNIC------------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMA  524 (683)
Q Consensus       481 KL~DFGla~~------------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~  524 (683)
                      ||+||||++.                                    ..++.|+||||+|||+|+++.|+.||+.......
T Consensus       613 KITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQQd  692 (775)
T KOG1151|consen  613 KITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQQD  692 (775)
T ss_pred             EeeecchhhhccCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchhHHH
Confidence            9999999864                                    2367899999999999999999999986433211


Q ss_pred             hhHHHHHHHhcCCCCCCC--hhhHHHHHHHHHHhhhcCCCccccccHHHHH
Q 005680          525 LDQTTLMQVLDGNAGIWP--LDLAEELAGIALKCLSADQDANRDLRIAGVM  573 (683)
Q Consensus       525 ~~~~~~~~ild~~~~~~p--~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl  573 (683)
                      .-  ....++......+|  +.++.+..++|++||++.  .++|....++.
T Consensus       693 IL--qeNTIlkAtEVqFP~KPvVsseAkaFIRRCLaYR--KeDR~DV~qLA  739 (775)
T KOG1151|consen  693 IL--QENTILKATEVQFPPKPVVSSEAKAFIRRCLAYR--KEDRIDVQQLA  739 (775)
T ss_pred             HH--hhhchhcceeccCCCCCccCHHHHHHHHHHHHhh--hhhhhhHHHHc
Confidence            11  11123333333343  367899999999999999  77887765554

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-34  Score=328.73  Aligned_cols=223  Identities=20%  Similarity=0.268  Sum_probs=186.3

Q ss_pred             ccccccCCceEEEEEEE-C-CeeEEEEEcC--CCCCHHHHHHHHHHHHhcC-CCCccceecccc-c--------ceeEEE
Q 005680          342 FRLKCAGDWTNVYRGRL-N-HASVAIKTLN--NGLSEEDFQAKVSFLTAVR-HPHLVAVMGCCS-E--------LKCIVF  407 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~-~-g~~VAvK~l~--~~~~~~~~~~Ev~iL~~l~-HpnIV~l~g~~~-~--------~~~LV~  407 (683)
                      .++|.+|||+.||.+.+ . |..||+|++-  +......+.+||.+|++|. |+|||.|++... .        ..+|.|
T Consensus        42 ~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~EvllLm  121 (738)
T KOG1989|consen   42 EKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVWEVLLLM  121 (738)
T ss_pred             EEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCceeEEEeeh
Confidence            46778999999999999 3 4899999986  2333467889999999996 999999999431 1        467999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCC
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL  487 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGl  487 (683)
                      |||.||+|-|++...        ....|++.++++|+.+++.|+++||... .+|||||||-+||||+.+|..||||||.
T Consensus       122 EyC~gg~Lvd~mn~R--------lq~~lte~eVLkIf~dv~~AVa~mH~~~-pPiIHRDLKiENvLls~~g~~KLCDFGS  192 (738)
T KOG1989|consen  122 EYCKGGSLVDFMNTR--------LQTRLTEDEVLKIFYDVCEAVAAMHYLK-PPIIHRDLKIENVLLSADGNYKLCDFGS  192 (738)
T ss_pred             hhccCCcHHHHHHHH--------HhccCChHHHHHHHHHHHHHHHHHhcCC-CccchhhhhhhheEEcCCCCEEeCcccc
Confidence            999999999999644        2344999999999999999999999987 7899999999999999999999999998


Q ss_pred             ccc-------------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHH
Q 005680          488 NIC-------------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTL  530 (683)
Q Consensus       488 a~~-------------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~  530 (683)
                      +..                                     ..+++|+|||+|||+||-|+....||+....         
T Consensus       193 att~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~---------  263 (738)
T KOG1989|consen  193 ATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGK---------  263 (738)
T ss_pred             cccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcc---------
Confidence            743                                     3578999999999999999999999975321         


Q ss_pred             HHHhcCCC-CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhcc
Q 005680          531 MQVLDGNA-GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKAD  584 (683)
Q Consensus       531 ~~ild~~~-~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~~  584 (683)
                      ..|+++.. .+..+.++..+.+||..||+.|  |..||++.+|+..+-.|.....
T Consensus       264 laIlng~Y~~P~~p~ys~~l~~LI~~mL~~n--P~~RPnI~Qv~~~~~~l~~~~~  316 (738)
T KOG1989|consen  264 LAILNGNYSFPPFPNYSDRLKDLIRTMLQPN--PDERPNIYQVLEEIFELANKPC  316 (738)
T ss_pred             eeEEeccccCCCCccHHHHHHHHHHHHhccC--cccCCCHHHHHHHHHHHhcCCC
Confidence            14444422 2222479999999999999999  8899999999999998876543

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.6e-35  Score=317.49  Aligned_cols=215  Identities=22%  Similarity=0.340  Sum_probs=181.2

Q ss_pred             ccccccccCCceEEEEEEE--CCeeEEEEEcC--CCCCHHHHHHHHHHHHhcCCCCccceecccc--cceeEEEeecCCC
Q 005680          340 ERFRLKCAGDWTNVYRGRL--NHASVAIKTLN--NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCS--ELKCIVFEYMPNG  413 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~--~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~--~~~~LV~Ey~~gg  413 (683)
                      ...+-+|+|+.|.||.+..  ++..||||++.  .....+-+.+|+.+|+..+|+|||.++..|.  +.+|+|||||+||
T Consensus       276 ~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVMEym~gg  355 (550)
T KOG0578|consen  276 TDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVMEYMEGG  355 (550)
T ss_pred             cchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEeecCCC
Confidence            3345568999999999987  67899999997  2333456889999999999999999999874  4899999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.|.+.           ...+++.++..|+.+++.||.|||.   ++|+|||||.+|||++.+|.+||+|||+|..   
T Consensus       356 sLTDvVt-----------~~~~~E~qIA~Icre~l~aL~fLH~---~gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~  421 (550)
T KOG0578|consen  356 SLTDVVT-----------KTRMTEGQIAAICREILQGLKFLHA---RGIIHRDIKSDNILLTMDGSVKLTDFGFCAQISE  421 (550)
T ss_pred             chhhhhh-----------cccccHHHHHHHHHHHHHHHHHHHh---cceeeeccccceeEeccCCcEEEeeeeeeecccc
Confidence            9999993           3459999999999999999999999   7799999999999999999999999999843   


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC--CCCCCChhhH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG--NAGIWPLDLA  546 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~--~~~~~p~~~~  546 (683)
                                            ..|++|+||||||++++||+-|.|||-....   .  ..+.-+.+.  .....+..++
T Consensus       422 ~~~KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~P---l--rAlyLIa~ng~P~lk~~~klS  496 (550)
T KOG0578|consen  422 EQSKRSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENP---L--RALYLIATNGTPKLKNPEKLS  496 (550)
T ss_pred             ccCccccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCCCh---H--HHHHHHhhcCCCCcCCccccC
Confidence                                  4689999999999999999999999853211   1  112222222  3344567899


Q ss_pred             HHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          547 EELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       547 ~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      +.+.+|+.+||+.|  +..|+++.++|+.
T Consensus       497 ~~~kdFL~~cL~~d--v~~RasA~eLL~H  523 (550)
T KOG0578|consen  497 PELKDFLDRCLVVD--VEQRASAKELLEH  523 (550)
T ss_pred             HHHHHHHHHHhhcc--hhcCCCHHHHhcC
Confidence            99999999999999  7899999999864

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=100.00  E-value=6.7e-35  Score=316.96  Aligned_cols=221  Identities=24%  Similarity=0.422  Sum_probs=194.3

Q ss_pred             ccccccCCceEEEEEEEC----C--eeEEEEEcCCC---CCHHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecC
Q 005680          342 FRLKCAGDWTNVYRGRLN----H--ASVAIKTLNNG---LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMP  411 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~----g--~~VAvK~l~~~---~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~  411 (683)
                      .+++|.|-||.||+|.++    |  -.||||..+.+   .+.+.|..|..+|+.++|||||+++|+|.+ +.|||||+++
T Consensus       394 ~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e~P~WivmEL~~  473 (974)
T KOG4257|consen  394 KRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVEQPMWIVMELAP  473 (974)
T ss_pred             HHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeeccceeEEEeccc
Confidence            357899999999999983    2  35999999843   345789999999999999999999999988 8899999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      -|.|..+|.         .....|+......++.||+.||+|||+   +++|||||...|||+.+.-.+||+|||+++. 
T Consensus       474 ~GELr~yLq---------~nk~sL~l~tL~ly~~Qi~talaYLeS---krfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~  541 (974)
T KOG4257|consen  474 LGELREYLQ---------QNKDSLPLRTLTLYCYQICTALAYLES---KRFVHRDIAARNILVSSPQCVKLADFGLSRYL  541 (974)
T ss_pred             chhHHHHHH---------hccccchHHHHHHHHHHHHHHHHHHHh---hchhhhhhhhhheeecCcceeeecccchhhhc
Confidence            999999995         345678999999999999999999999   7899999999999999999999999999975 


Q ss_pred             -------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChh
Q 005680          491 -------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLD  544 (683)
Q Consensus       491 -------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~  544 (683)
                                               ..+|.+||||-|||.+||++. |..||..+.+     .+.+..+-.+.+.+.|+.
T Consensus       542 ed~~yYkaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkN-----sDVI~~iEnGeRlP~P~n  616 (974)
T KOG4257|consen  542 EDDAYYKASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKN-----SDVIGHIENGERLPCPPN  616 (974)
T ss_pred             cccchhhccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCccccccc-----cceEEEecCCCCCCCCCC
Confidence                                     357899999999999999988 9999987644     233334555678889999


Q ss_pred             hHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHH
Q 005680          545 LAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRK  581 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~  581 (683)
                      ||+.+..|+.+||.++  |.+||.+.++...|..+..
T Consensus       617 CPp~LYslmskcWaye--P~kRPrftei~~~lsdv~q  651 (974)
T KOG4257|consen  617 CPPALYSLMSKCWAYE--PSKRPRFTEIKAILSDVLQ  651 (974)
T ss_pred             CChHHHHHHHHHhccC--cccCCcHHHHHHHHHHHHH
Confidence            9999999999999999  8899999999999988875

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=8.5e-35  Score=311.11  Aligned_cols=213  Identities=22%  Similarity=0.266  Sum_probs=175.6

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      +++|+|+||.||++..  +|..||+|++...     .....+..|+.++..++||||+++++++.+  ..||||||+++|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence            3578999999999987  6899999998732     223567789999999999999999998865  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++.          ....+++..+..++.||+.||.|||+.  .+|+||||||+|||++.++.+||+|||+++.   
T Consensus        81 ~L~~~l~----------~~~~l~~~~~~~~~~qi~~aL~~lH~~--~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~  148 (325)
T cd05594          81 ELFFHLS----------RERVFSEDRARFYGAEIVSALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIK  148 (325)
T ss_pred             cHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHhc--CCEEecCCCCCeEEECCCCCEEEecCCCCeecCC
Confidence            9999883          445799999999999999999999962  4699999999999999999999999998742   


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE  548 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~  548 (683)
                                            ..++.++|||||||++|+|+||+.||.....      ......+......+|..+++.
T Consensus       149 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~------~~~~~~i~~~~~~~p~~~~~~  222 (325)
T cd05594         149 DGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH------EKLFELILMEEIRFPRTLSPE  222 (325)
T ss_pred             CCcccccccCCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCCCH------HHHHHHHhcCCCCCCCCCCHH
Confidence                                  2467899999999999999999999964221      112222223334456678899


Q ss_pred             HHHHHHHhhhcCCCccccc-----cHHHHHHH
Q 005680          549 LAGIALKCLSADQDANRDL-----RIAGVMKE  575 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RP-----s~~eVl~~  575 (683)
                      +.+|+.+||+.|  |..|+     ++.+++..
T Consensus       223 ~~~li~~~L~~d--P~~R~~~~~~~~~~il~h  252 (325)
T cd05594         223 AKSLLSGLLKKD--PKQRLGGGPDDAKEIMQH  252 (325)
T ss_pred             HHHHHHHHhhcC--HHHhCCCCCCCHHHHhcC
Confidence            999999999999  88996     78887653

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=1.2e-34  Score=289.91  Aligned_cols=219  Identities=20%  Similarity=0.274  Sum_probs=177.4

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      ..+.+|+|.||.||+|++  +|+.||||+++..    .-.-...+|+..|+.++||||+.++++|..  ...||+||++ 
T Consensus         6 ~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfEfm~-   84 (318)
T KOG0659|consen    6 KLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFEFMP-   84 (318)
T ss_pred             hhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEEecc-
Confidence            346779999999999998  7999999999832    223567899999999999999999999976  7889999998 


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      .+|+..+.         .....|+..++..++.++++||+|||.   ..|+||||||.|+|++++|.+||+|||+|+.  
T Consensus        85 tdLe~vIk---------d~~i~l~pa~iK~y~~m~LkGl~y~H~---~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~  152 (318)
T KOG0659|consen   85 TDLEVVIK---------DKNIILSPADIKSYMLMTLKGLAYCHS---KWILHRDLKPNNLLISSDGQLKIADFGLARFFG  152 (318)
T ss_pred             ccHHHHhc---------ccccccCHHHHHHHHHHHHHHHHHHHh---hhhhcccCCccceEEcCCCcEEeecccchhccC
Confidence            79999996         456789999999999999999999999   6699999999999999999999999999965  


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCC--------
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNA--------  538 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~--------  538 (683)
                                              ..|+..+||||.|||+.||+-|.|.|....+..... ..+..+--+..        
T Consensus       153 ~p~~~~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDidQL~-~If~~LGTP~~~~WP~~~~  231 (318)
T KOG0659|consen  153 SPNRIQTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDIDQLS-KIFRALGTPTPDQWPEMTS  231 (318)
T ss_pred             CCCcccccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchHHHHH-HHHHHcCCCCcccCccccc
Confidence                                    358999999999999999999998775433211000 00000000011        


Q ss_pred             ---------------CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          539 ---------------GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       539 ---------------~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                                     ...-+..+.++.+|+.++|.+|  |.+|+|+.+++++
T Consensus       232 lpdY~~~~~~P~~~~~~lf~aas~d~ldLl~~m~~yn--P~~Rita~qaL~~  281 (318)
T KOG0659|consen  232 LPDYVKIQQFPKPPLNNLFPAASSDALDLLSKMLTYN--PKKRITASQALKH  281 (318)
T ss_pred             cccHHHHhcCCCCccccccccccHHHHHHHHhhhccC--chhcccHHHHhcc
Confidence                           1112245677899999999999  8899999998764

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=3.2e-34  Score=296.64  Aligned_cols=223  Identities=21%  Similarity=0.370  Sum_probs=179.1

Q ss_pred             cccccCCceEEEEEEEC--C--eeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc--------ceeEE
Q 005680          343 RLKCAGDWTNVYRGRLN--H--ASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--------LKCIV  406 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~--g--~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--------~~~LV  406 (683)
                      +++|+|+||.||+|.+.  +  ..||||.+...    .....+..|+.+++.++||||++++++|..        ..++|
T Consensus         5 ~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v   84 (272)
T cd05075           5 KTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSPVVI   84 (272)
T ss_pred             cccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCcEEE
Confidence            56789999999999983  3  36999998632    223568899999999999999999998632        46899


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      |||+++|+|.+++......    .....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||
T Consensus        85 ~e~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg  157 (272)
T cd05075          85 LPFMKHGDLHSFLLYSRLG----DCPQYLPTQMLVKFMTDIASGMEYLSS---KSFIHRDLAARNCMLNENMNVCVADFG  157 (272)
T ss_pred             EEeCCCCcHHHHHHHhccc----CCcccCCHHHHHHHHHHHHHHHHHHHH---CCeeccccchhheEEcCCCCEEECCCC
Confidence            9999999999988433110    233568999999999999999999999   679999999999999999999999999


Q ss_pred             Cccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCC
Q 005680          487 LNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNA  538 (683)
Q Consensus       487 la~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~  538 (683)
                      +++.                           ..++.++|||||||++|+|++ |.+||.....     ......+.....
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~-----~~~~~~~~~~~~  232 (272)
T cd05075         158 LSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVEN-----SEIYDYLRQGNR  232 (272)
T ss_pred             cccccCcccceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCH-----HHHHHHHHcCCC
Confidence            9752                           225678999999999999999 8899864322     122223333333


Q ss_pred             CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          539 GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       539 ~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                      ...+..++..+.+++.+||+.|  |..|||+.++++.|+.+
T Consensus       233 ~~~~~~~~~~~~~li~~~l~~~--p~~Rps~~~l~~~l~~~  271 (272)
T cd05075         233 LKQPPDCLDGLYSLMSSCWLLN--PKDRPSFETLRCELEKA  271 (272)
T ss_pred             CCCCCCCCHHHHHHHHHHcCCC--cccCcCHHHHHHHHHhh
Confidence            3445677889999999999999  77999999999998864

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=2.8e-34  Score=299.71  Aligned_cols=228  Identities=25%  Similarity=0.434  Sum_probs=181.7

Q ss_pred             CccccccccccCCceEEEEEEE------CCeeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceeccccc----ce
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL------NHASVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE----LK  403 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~------~g~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----~~  403 (683)
                      .|....+++|.|+||.||++.+      ++..||+|.+....   ....+.+|+.+|++++||||++++++|..    ..
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (283)
T cd05080           4 RYLKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGL   83 (283)
T ss_pred             hhceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceE
Confidence            3444557789999999988763      46789999987432   34678899999999999999999998753    47


Q ss_pred             eEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEe
Q 005680          404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKIS  483 (683)
Q Consensus       404 ~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~  483 (683)
                      ++||||+++|+|.+++.           ...+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.+||+
T Consensus        84 ~lv~e~~~~~~l~~~~~-----------~~~l~~~~~~~i~~~l~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~~l~  149 (283)
T cd05080          84 QLIMEYVPLGSLRDYLP-----------KHKLNLAQLLLFAQQICEGMAYLHS---QHYIHRDLAARNVLLDNDRLVKIG  149 (283)
T ss_pred             EEEecCCCCCCHHHHHH-----------HcCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccChheEEEcCCCcEEEe
Confidence            89999999999999983           2358999999999999999999999   679999999999999999999999


Q ss_pred             cCCCccc----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHh---------hhh
Q 005680          484 GLGLNIC----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAM---------ALD  526 (683)
Q Consensus       484 DFGla~~----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~---------~~~  526 (683)
                      |||++..                            ..++.++||||||+++|+|+||..|+.......         ...
T Consensus       150 dfg~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~  229 (283)
T cd05080         150 DFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMT  229 (283)
T ss_pred             ecccccccCCcchhhccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccc
Confidence            9998742                            235678999999999999999998875422100         000


Q ss_pred             HHHHHHHhcC-CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          527 QTTLMQVLDG-NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       527 ~~~~~~ild~-~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      ...+...++. .....+..++..+.+++.+||+.+  |..|||+.+++..|+.+.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~--p~~Rps~~~i~~~l~~~~  282 (283)
T cd05080         230 VVRLIELLERGMRLPCPKNCPQEVYILMKNCWETE--AKFRPTFRSLIPILKEMH  282 (283)
T ss_pred             hhhhhhhhhcCCCCCCCCCCCHHHHHHHHHHhccC--hhhCCCHHHHHHHHHHhh
Confidence            1111122221 222345567889999999999999  889999999999998864

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=3.3e-34  Score=306.29  Aligned_cols=209  Identities=21%  Similarity=0.245  Sum_probs=169.6

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHH-HHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVS-FLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~-iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      +++|+|+||.||+|..  +|..||||++...     .....+..|.. +++.++||||+++++++.+  ..|+||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence            3578999999999998  6899999998621     12234555554 4678999999999998865  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|..++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++.  
T Consensus        81 g~L~~~l~----------~~~~~~~~~~~~~~~qi~~~l~~lH~---~givH~dikp~NIll~~~~~~kl~Dfg~~~~~~  147 (323)
T cd05575          81 GELFFHLQ----------RERSFPEPRARFYAAEIASALGYLHS---LNIIYRDLKPENILLDSQGHVVLTDFGLCKEGI  147 (323)
T ss_pred             CCHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCCHHHeEECCCCcEEEeccCCCcccc
Confidence            99999983          44578999999999999999999999   6799999999999999999999999998742  


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHH
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAE  547 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~  547 (683)
                                             ..++.++|||||||++|+|++|.+||.....     ......++.. ....++.++.
T Consensus       148 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~-----~~~~~~i~~~-~~~~~~~~~~  221 (323)
T cd05575         148 EHSKTTSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDT-----AEMYDNILNK-PLRLKPNISV  221 (323)
T ss_pred             cCCCccccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCCCH-----HHHHHHHHcC-CCCCCCCCCH
Confidence                                   2467899999999999999999999964221     1122233332 2334556788


Q ss_pred             HHHHHHHHhhhcCCCccccccHHHH
Q 005680          548 ELAGIALKCLSADQDANRDLRIAGV  572 (683)
Q Consensus       548 ~l~~Li~~CL~~dP~p~~RPs~~eV  572 (683)
                      .+.+++.+||+.|  |.+||++.+.
T Consensus       222 ~~~~li~~~l~~~--p~~R~~~~~~  244 (323)
T cd05575         222 SARHLLEGLLQKD--RTKRLGAKDD  244 (323)
T ss_pred             HHHHHHHHHhhcC--HHhCCCCCCC
Confidence            9999999999999  8899997643

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=2e-34  Score=311.17  Aligned_cols=217  Identities=21%  Similarity=0.269  Sum_probs=176.7

Q ss_pred             cCccccccccccCCceEEEEEEEC---CeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRLN---HASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCI  405 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~~---g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~L  405 (683)
                      ++|... +.+|+|+||.||+|.+.   +..||+|++..     ......+.+|+.++..++|||||++++++.+  ..|+
T Consensus        30 ~~y~~~-~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~l  108 (340)
T PTZ00426         30 EDFNFI-RTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYL  108 (340)
T ss_pred             hhcEEE-EEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEE
Confidence            345433 56789999999999862   36899999862     2234578899999999999999999999966  6899


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecC
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGL  485 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DF  485 (683)
                      ||||+++|+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+||
T Consensus       109 v~Ey~~~g~L~~~i~----------~~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDLkp~NILl~~~~~ikL~DF  175 (340)
T PTZ00426        109 VLEFVIGGEFFTFLR----------RNKRFPNDVGCFYAAQIVLIFEYLQS---LNIVYRDLKPENLLLDKDGFIKMTDF  175 (340)
T ss_pred             EEeCCCCCcHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCeEccCCCHHHEEECCCCCEEEecC
Confidence            999999999999993          44578999999999999999999999   77999999999999999999999999


Q ss_pred             CCccc----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCCh
Q 005680          486 GLNIC----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPL  543 (683)
Q Consensus       486 Gla~~----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~  543 (683)
                      |++..                      ..++.++|||||||++|+|++|.+||.....     ......+.. ....+|.
T Consensus       176 G~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~-----~~~~~~i~~-~~~~~p~  249 (340)
T PTZ00426        176 GFAKVVDTRTYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEP-----LLIYQKILE-GIIYFPK  249 (340)
T ss_pred             CCCeecCCCcceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCCCH-----HHHHHHHhc-CCCCCCC
Confidence            99853                      2367899999999999999999999975322     112223333 2334566


Q ss_pred             hhHHHHHHHHHHhhhcCCCccccc-----cHHHHHH
Q 005680          544 DLAEELAGIALKCLSADQDANRDL-----RIAGVMK  574 (683)
Q Consensus       544 ~~~~~l~~Li~~CL~~dP~p~~RP-----s~~eVl~  574 (683)
                      .++..+.+++.+||+.|  |..|+     ++.++++
T Consensus       250 ~~~~~~~~li~~~l~~d--p~~R~~~~~~~~~~~~~  283 (340)
T PTZ00426        250 FLDNNCKHLMKKLLSHD--LTKRYGNLKKGAQNVKE  283 (340)
T ss_pred             CCCHHHHHHHHHHcccC--HHHcCCCCCCCHHHHHc
Confidence            77889999999999999  77885     6666653

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=5.9e-34  Score=292.82  Aligned_cols=216  Identities=24%  Similarity=0.404  Sum_probs=180.0

Q ss_pred             ccccCCceEEEEEEE--CC---eeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecCCCC
Q 005680          344 LKCAGDWTNVYRGRL--NH---ASVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMPNGN  414 (683)
Q Consensus       344 liG~G~fG~Vykg~~--~g---~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~ggs  414 (683)
                      .+|+|+||.||+|.+  ++   ..||+|.+....   ....+.+|+.+++.+.|||||++++++.. ..++||||+++|+
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~~~   81 (257)
T cd05060           2 ELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCKGEPLMLVMELAPLGP   81 (257)
T ss_pred             ccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEcCCceEEEEEeCCCCc
Confidence            578999999999987  22   689999998433   24578899999999999999999998865 7899999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++.          ....+++..+..++.|++.||.|||.   .+++|+||||+|||++.++.+||+|||+++.    
T Consensus        82 L~~~l~----------~~~~~~~~~~~~~~~qi~~~l~~lh~---~~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~  148 (257)
T cd05060          82 LLKYLK----------KRREIPVSDLKELAHQVAMGMAYLES---KHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAG  148 (257)
T ss_pred             HHHHHH----------hCCCCCHHHHHHHHHHHHHHHHHHhh---cCeeccCcccceEEEcCCCcEEeccccccceeecC
Confidence            999994          33478999999999999999999999   6799999999999999999999999998742    


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhh
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDL  545 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~  545 (683)
                                              ..++.++|||||||++|+|++ |.+||.....     ......+........|..+
T Consensus       149 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~  223 (257)
T cd05060         149 SDYYRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKG-----AEVIAMLESGERLPRPEEC  223 (257)
T ss_pred             CcccccccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCH-----HHHHHHHHcCCcCCCCCCC
Confidence                                    235668999999999999998 9999864322     1112222222333456677


Q ss_pred             HHHHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          546 AEELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       546 ~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                      +..+.+++.+||..+  |..||++.+|+..|+.+
T Consensus       224 ~~~l~~li~~cl~~~--p~~Rp~~~~l~~~l~~~  255 (257)
T cd05060         224 PQEIYSIMLSCWKYR--PEDRPTFSELESTFRRD  255 (257)
T ss_pred             CHHHHHHHHHHhcCC--hhhCcCHHHHHHHHHhc
Confidence            889999999999999  88999999999999875

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=6.6e-34  Score=303.45  Aligned_cols=207  Identities=22%  Similarity=0.292  Sum_probs=169.7

Q ss_pred             ccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEEeecCCC
Q 005680          344 LKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       344 liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      ++|.|+||.||+|..  ++..||||+++..     .....+..|..++..+ +||||+++++++..  ..|+||||++||
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~gg   81 (316)
T cd05592           2 VLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNGG   81 (316)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCCC
Confidence            578999999999998  5788999998722     2234556677777654 89999999999865  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++.          ....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++.   
T Consensus        82 ~L~~~~~----------~~~~~~~~~~~~~~~qi~~al~~LH~---~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~  148 (316)
T cd05592          82 DLMFHIQ----------SSGRFDEARARFYAAEIICGLQFLHK---KGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMN  148 (316)
T ss_pred             cHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCEEeCCCCHHHeEECCCCCEEEccCcCCeECCC
Confidence            9999983          44568999999999999999999999   6799999999999999999999999998752   


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE  548 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~  548 (683)
                                            ..++.++|||||||++|+|++|+.||.....     ...+.. +....+..|..++..
T Consensus       149 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~-----~~~~~~-i~~~~~~~~~~~~~~  222 (316)
T cd05592         149 GEGKASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDE-----DELFDS-ILNDRPHFPRWISKE  222 (316)
T ss_pred             CCCccccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCCH-----HHHHHH-HHcCCCCCCCCCCHH
Confidence                                  2467899999999999999999999965322     111222 223344566678889


Q ss_pred             HHHHHHHhhhcCCCccccccHHH
Q 005680          549 LAGIALKCLSADQDANRDLRIAG  571 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs~~e  571 (683)
                      +.+|+.+||+.|  |..||++.+
T Consensus       223 ~~~ll~~~l~~~--P~~R~~~~~  243 (316)
T cd05592         223 AKDCLSKLFERD--PTKRLGVDG  243 (316)
T ss_pred             HHHHHHHHccCC--HHHcCCChH
Confidence            999999999999  889998753

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=2e-34  Score=308.11  Aligned_cols=211  Identities=24%  Similarity=0.318  Sum_probs=173.9

Q ss_pred             cccccCCceEEEEEEE-----CCeeEEEEEcCCC------CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEee
Q 005680          343 RLKCAGDWTNVYRGRL-----NHASVAIKTLNNG------LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEY  409 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~-----~g~~VAvK~l~~~------~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey  409 (683)
                      +.+|+|+||.||++..     .++.||||++...      .....+..|+.+|..++||||++++++|.+  ..|+||||
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~   81 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY   81 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence            4678999999999985     4688999998621      223457889999999999999999999865  78999999


Q ss_pred             cCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCcc
Q 005680          410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNI  489 (683)
Q Consensus       410 ~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~  489 (683)
                      +++|+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++
T Consensus        82 ~~~~~L~~~~~----------~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~  148 (323)
T cd05584          82 LSGGELFMHLE----------REGIFMEDTACFYLSEISLALEHLHQ---QGIIYRDLKPENILLDAQGHVKLTDFGLCK  148 (323)
T ss_pred             CCCchHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCCEEEeeCcCCe
Confidence            99999999983          44568899999999999999999999   679999999999999999999999999874


Q ss_pred             c-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChh
Q 005680          490 C-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLD  544 (683)
Q Consensus       490 ~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~  544 (683)
                      .                         ..++.++|||||||++|+|++|++||.....     ...+..+... ....|..
T Consensus       149 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~-----~~~~~~~~~~-~~~~~~~  222 (323)
T cd05584         149 ESIHEGTVTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENR-----KKTIDKILKG-KLNLPPY  222 (323)
T ss_pred             ecccCCCcccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCCH-----HHHHHHHHcC-CCCCCCC
Confidence            2                         2356789999999999999999999975322     1222333332 3355667


Q ss_pred             hHHHHHHHHHHhhhcCCCccccc-----cHHHHHH
Q 005680          545 LAEELAGIALKCLSADQDANRDL-----RIAGVMK  574 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RP-----s~~eVl~  574 (683)
                      +++.+.+|+.+||+.|  |.+||     ++.+++.
T Consensus       223 ~~~~~~~li~~~l~~~--p~~R~~~~~~~~~~l~~  255 (323)
T cd05584         223 LTPEARDLLKKLLKRN--PSSRLGAGPGDAAEVQS  255 (323)
T ss_pred             CCHHHHHHHHHHcccC--HhHcCCCCCCCHHHHhc
Confidence            8899999999999999  88999     6666554

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=4.2e-34  Score=294.28  Aligned_cols=218  Identities=22%  Similarity=0.381  Sum_probs=179.5

Q ss_pred             cccccCCceEEEEEEE-CCeeEEEEEcCC-CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCchhh
Q 005680          343 RLKCAGDWTNVYRGRL-NHASVAIKTLNN-GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRDK  418 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~-~g~~VAvK~l~~-~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~~  418 (683)
                      +.+|.|+||.||+|.. ++..||+|.+.. ....+.+.+|+.+++.++||||+++++++.+  ..++||||+++|+|.++
T Consensus        12 ~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~   91 (261)
T cd05072          12 KKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEYMAKGSLLDF   91 (261)
T ss_pred             eecCCcCCceEEEEEecCCceEEEEEccCCchhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEecCCCCcHHHH
Confidence            4568999999999998 567899999873 3345789999999999999999999998865  78999999999999999


Q ss_pred             hhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--------
Q 005680          419 LFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--------  490 (683)
Q Consensus       419 L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--------  490 (683)
                      +...        ....+++..+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||++..        
T Consensus        92 l~~~--------~~~~~~~~~~~~~~~~l~~~l~~LH~---~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~  160 (261)
T cd05072          92 LKSD--------EGGKVLLPKLIDFSAQIAEGMAYIER---KNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTA  160 (261)
T ss_pred             HHHh--------cCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccchhhEEecCCCcEEECCCccceecCCCceec
Confidence            8532        24568899999999999999999999   6799999999999999999999999999843        


Q ss_pred             ------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHH
Q 005680          491 ------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAG  551 (683)
Q Consensus       491 ------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~  551 (683)
                                        ..++.++|||||||++|+|+| |..||.....     ......+......+.+..++..+.+
T Consensus       161 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  235 (261)
T cd05072         161 REGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSN-----SDVMSALQRGYRMPRMENCPDELYD  235 (261)
T ss_pred             cCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCH-----HHHHHHHHcCCCCCCCCCCCHHHHH
Confidence                              224668999999999999998 9999864221     1122222222223334457789999


Q ss_pred             HHHHhhhcCCCccccccHHHHHHHHHH
Q 005680          552 IALKCLSADQDANRDLRIAGVMKELDE  578 (683)
Q Consensus       552 Li~~CL~~dP~p~~RPs~~eVl~~L~~  578 (683)
                      ++.+||..+  |..||++.++.+.|+.
T Consensus       236 li~~~l~~~--p~~Rp~~~~i~~~l~~  260 (261)
T cd05072         236 IMKTCWKEK--AEERPTFDYLQSVLDD  260 (261)
T ss_pred             HHHHHccCC--cccCcCHHHHHHHHhc
Confidence            999999999  8899999999999875

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-34  Score=304.72  Aligned_cols=218  Identities=21%  Similarity=0.294  Sum_probs=180.1

Q ss_pred             ccccccccCCceEEEEEEE--CCeeEEEEEcCC---CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          340 ERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN---GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~---~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      +....+|.|..++||+|+.  .+..||||++.-   ..+.+.+.+|+..++.++|||||+++..|..  .+|+||.||.+
T Consensus        29 eL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvVmpfMa~  108 (516)
T KOG0582|consen   29 ELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVVMPFMAG  108 (516)
T ss_pred             eEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecceeEEeehhhcC
Confidence            3345778999999999998  689999999982   2235789999999999999999999999854  89999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      ||+.+++...        -...+++..+..|+.++++||.|||.   .|.||||||+.||||+.+|.+||+|||.+-.  
T Consensus       109 GS~ldIik~~--------~~~Gl~E~~Ia~iLre~LkaL~YLH~---~G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~  177 (516)
T KOG0582|consen  109 GSLLDIIKTY--------YPDGLEEASIATILREVLKALDYLHQ---NGHIHRDVKAGNILIDSDGTVKLADFGVSASLF  177 (516)
T ss_pred             CcHHHHHHHH--------ccccccHHHHHHHHHHHHHHHHHHHh---cCceecccccccEEEcCCCcEEEcCceeeeeec
Confidence            9999999655        34559999999999999999999999   6799999999999999999999999987522  


Q ss_pred             -----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCC--
Q 005680          491 -----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG--  539 (683)
Q Consensus       491 -----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~--  539 (683)
                                                   .+|+.|+|||||||+.+||.+|..||...+..     ..+..-+.+..+  
T Consensus       178 ~~G~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPm-----kvLl~tLqn~pp~~  252 (516)
T KOG0582|consen  178 DSGDRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYPPM-----KVLLLTLQNDPPTL  252 (516)
T ss_pred             ccCceeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCChH-----HHHHHHhcCCCCCc
Confidence                                         46999999999999999999999999764431     111122222111  


Q ss_pred             ---CCC----hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          540 ---IWP----LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       540 ---~~p----~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                         ..+    ...+..+..++..||.+|  |++|||++++++.
T Consensus       253 ~t~~~~~d~~k~~~ksf~e~i~~CL~kD--P~kRptAskLlkh  293 (516)
T KOG0582|consen  253 LTSGLDKDEDKKFSKSFREMIALCLVKD--PSKRPTASKLLKH  293 (516)
T ss_pred             ccccCChHHhhhhcHHHHHHHHHHhhcC--cccCCCHHHHhcc
Confidence               111    235678999999999999  8899999999853

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.8e-34  Score=294.75  Aligned_cols=224  Identities=22%  Similarity=0.405  Sum_probs=183.1

Q ss_pred             ccccccCCceEEEEEEEC-----CeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc--------cee
Q 005680          342 FRLKCAGDWTNVYRGRLN-----HASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--------LKC  404 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~-----g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--------~~~  404 (683)
                      .+++|+|+||.||+|.+.     +..||||.+....    ....+.+|+.+++.++||||+++++++..        ..+
T Consensus         4 ~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~   83 (273)
T cd05035           4 GKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIPKPM   83 (273)
T ss_pred             ccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCcccE
Confidence            356799999999999872     3679999987322    23578899999999999999999998743        268


Q ss_pred             EEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEec
Q 005680          405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISG  484 (683)
Q Consensus       405 LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~D  484 (683)
                      +||||+++|+|..++......    .....+++..+..++.|++.||.|||+   .+|+||||||+||++++++.+||+|
T Consensus        84 ~v~e~~~~~~l~~~l~~~~~~----~~~~~~~~~~~~~~~~~i~~aL~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~d  156 (273)
T cd05035          84 VILPFMKHGDLHSFLLYSRLG----GLPEKLPLQTLLKFMVDIALGMEYLSN---RNFIHRDLAARNCMLREDMTVCVAD  156 (273)
T ss_pred             EEEeccCCCCHHHHHHHhhcc----CCcccCCHHHHHHHHHHHHHHHHHHHh---CCeeccccchheEEECCCCeEEECC
Confidence            999999999999998644211    133568999999999999999999999   6799999999999999999999999


Q ss_pred             CCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcC
Q 005680          485 LGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDG  536 (683)
Q Consensus       485 FGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~  536 (683)
                      ||+++.                           ..++.++|||||||++|||++ |.+||.....     ...+..+..+
T Consensus       157 fg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~-----~~~~~~~~~~  231 (273)
T cd05035         157 FGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVEN-----HEIYDYLRHG  231 (273)
T ss_pred             ccceeeccccccccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCH-----HHHHHHHHcC
Confidence            999753                           235678999999999999999 8888864322     2233344444


Q ss_pred             CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          537 NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       537 ~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                      .....|..++..+.+++.+||+.|  |..|||+.++++.|+.+
T Consensus       232 ~~~~~~~~~~~~~~~li~~~l~~~--p~~Rp~~~e~~~~l~~~  272 (273)
T cd05035         232 NRLKQPEDCLDELYDLMYSCWRAD--PKDRPTFTKLREVLENI  272 (273)
T ss_pred             CCCCCCcCCCHHHHHHHHHHcCCC--hhhCcCHHHHHHHHHhh
Confidence            445556678899999999999999  88999999999999875

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=2e-34  Score=315.16  Aligned_cols=234  Identities=21%  Similarity=0.313  Sum_probs=182.9

Q ss_pred             CccccccccccCCceEEEEEEE-------CCeeEEEEEcCCCCC---HHHHHHHHHHHHhc-CCCCccceeccccc--ce
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL-------NHASVAIKTLNNGLS---EEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LK  403 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~-------~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~  403 (683)
                      +|.. .+.+|+|+||.||+|..       ++..||||++.....   ...+.+|+.+++.+ +|||||+++|+|.+  ..
T Consensus        39 ~~~~-~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~~~  117 (374)
T cd05106          39 NLQF-GKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHGGPV  117 (374)
T ss_pred             Hcee-hheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCCCCe
Confidence            4433 35678999999999985       225799999974332   34688999999999 89999999999866  78


Q ss_pred             eEEEeecCCCCchhhhhhccccc---------------------------------------------------------
Q 005680          404 CIVFEYMPNGNLRDKLFTSQRNY---------------------------------------------------------  426 (683)
Q Consensus       404 ~LV~Ey~~ggsL~~~L~~~~~~~---------------------------------------------------------  426 (683)
                      ++||||+++|+|.+++.......                                                         
T Consensus       118 ~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (374)
T cd05106         118 LVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSSDS  197 (374)
T ss_pred             EEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCccccccccccc
Confidence            99999999999999985431100                                                         


Q ss_pred             ---ccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-------------
Q 005680          427 ---KNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-------------  490 (683)
Q Consensus       427 ---~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-------------  490 (683)
                         .......++++..++.|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++.             
T Consensus       198 ~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~---~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~~  274 (374)
T cd05106         198 KDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLAS---KNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNA  274 (374)
T ss_pred             cchhccCCCCCcCHHHHHHHHHHHHHHHHHHHH---CCEEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeeccCC
Confidence               000112358999999999999999999999   7799999999999999999999999998742             


Q ss_pred             --------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHH
Q 005680          491 --------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALK  555 (683)
Q Consensus       491 --------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~  555 (683)
                                    ..++.++|||||||++|+|++ |++||.....    .......+........|..+++++.+++.+
T Consensus       275 ~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  350 (374)
T cd05106         275 RLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILV----NSKFYKMVKRGYQMSRPDFAPPEIYSIMKM  350 (374)
T ss_pred             CCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccc----cHHHHHHHHcccCccCCCCCCHHHHHHHHH
Confidence                          246789999999999999997 9999864321    111111122223334455567899999999


Q ss_pred             hhhcCCCccccccHHHHHHHHHHHH
Q 005680          556 CLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       556 CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      ||+.|  |..|||+.+|++.|+.+.
T Consensus       351 cl~~d--p~~RPs~~~l~~~l~~~~  373 (374)
T cd05106         351 CWNLE--PTERPTFSQISQLIQRQL  373 (374)
T ss_pred             HcCCC--hhhCcCHHHHHHHHHHHh
Confidence            99999  789999999999998863

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=2.4e-34  Score=307.16  Aligned_cols=204  Identities=23%  Similarity=0.325  Sum_probs=168.8

Q ss_pred             ccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEEeecCCC
Q 005680          344 LKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       344 liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      ++|+|+||.||+|..  +|..||||++...     .....+..|..++..+ +||||+++++++.+  ..||||||+++|
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~   81 (321)
T cd05591           2 VLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNGG   81 (321)
T ss_pred             ccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCCC
Confidence            578999999999998  4789999998732     2234577889998876 79999999999865  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|..++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..   
T Consensus        82 ~L~~~l~----------~~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~  148 (321)
T cd05591          82 DLMFQIQ----------RSRKFDEPRSRFYAAEVTLALMFLHR---HGVIYRDLKLDNILLDAEGHCKLADFGMCKEGIL  148 (321)
T ss_pred             cHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHeEECCCCCEEEeecccceeccc
Confidence            9999983          44568999999999999999999999   6799999999999999999999999998742   


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE  548 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~  548 (683)
                                            ..++.++|||||||++|+|+||++||.....     ...+..+.. .....|..++.+
T Consensus       149 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~-----~~~~~~i~~-~~~~~p~~~~~~  222 (321)
T cd05591         149 NGVTTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNE-----DDLFESILH-DDVLYPVWLSKE  222 (321)
T ss_pred             CCccccccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCCCH-----HHHHHHHHc-CCCCCCCCCCHH
Confidence                                  2467899999999999999999999975322     122222322 223445567889


Q ss_pred             HHHHHHHhhhcCCCcccccc
Q 005680          549 LAGIALKCLSADQDANRDLR  568 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs  568 (683)
                      +.+++.+||+.|  |..||+
T Consensus       223 ~~~ll~~~L~~d--p~~R~~  240 (321)
T cd05591         223 AVSILKAFMTKN--PNKRLG  240 (321)
T ss_pred             HHHHHHHHhccC--HHHcCC
Confidence            999999999999  889993

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=6.3e-35  Score=288.27  Aligned_cols=217  Identities=20%  Similarity=0.304  Sum_probs=185.4

Q ss_pred             ccccccccCCceEEEEEEE--CCeeEEEEEcC-----CCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeec
Q 005680          340 ERFRLKCAGDWTNVYRGRL--NHASVAIKTLN-----NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYM  410 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~-----~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~  410 (683)
                      +..+++|+|-||.||.|+.  ++-.||+|++.     ......++.+|++|-+.|+||||+++||+|-+  ..||++||.
T Consensus        25 eigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyLilEya  104 (281)
T KOG0580|consen   25 EIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYLILEYA  104 (281)
T ss_pred             cccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEEEEEec
Confidence            3457889999999999998  57899999986     23345789999999999999999999999977  789999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~  490 (683)
                      ++|+|...|...        ....+++.....++.|+|.||.|+|.   ++||||||||+|+|++..+..||+|||-+..
T Consensus       105 ~~gel~k~L~~~--------~~~~f~e~~~a~Yi~q~A~Al~y~h~---k~VIhRdiKpenlLlg~~~~lkiAdfGwsV~  173 (281)
T KOG0580|consen  105 PRGELYKDLQEG--------RMKRFDEQRAATYIKQLANALLYCHL---KRVIHRDIKPENLLLGSAGELKIADFGWSVH  173 (281)
T ss_pred             CCchHHHHHHhc--------ccccccccchhHHHHHHHHHHHHhcc---CCcccCCCCHHHhccCCCCCeeccCCCceee
Confidence            999999999543        45668888899999999999999999   7899999999999999999999999998643


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHH
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAE  547 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~  547 (683)
                                             ..++..+|+|++|++.||++.|.+||....     ....+ .-+......+|..++.
T Consensus       174 ~p~~kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~-----~~etY-krI~k~~~~~p~~is~  247 (281)
T KOG0580|consen  174 APSNKRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQS-----HSETY-KRIRKVDLKFPSTISG  247 (281)
T ss_pred             cCCCCceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhh-----hHHHH-HHHHHccccCCcccCh
Confidence                                   357889999999999999999999997532     12223 3333345566788999


Q ss_pred             HHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          548 ELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       548 ~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .+.++|.+|+..+  |..|.+..+++..
T Consensus       248 ~a~dlI~~ll~~~--p~~r~~l~~v~~h  273 (281)
T KOG0580|consen  248 GAADLISRLLVKN--PIERLALTEVMDH  273 (281)
T ss_pred             hHHHHHHHHhccC--ccccccHHHHhhh
Confidence            9999999999999  7799998888764

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=9.8e-35  Score=319.21  Aligned_cols=214  Identities=21%  Similarity=0.290  Sum_probs=186.8

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      .+-+|.|+.|.|..|+.  +|+.+|||++...     .....+.+|+-+|+-|.||||+.+|+++.+  .+|||.||++|
T Consensus        17 gkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvlEyv~g   96 (786)
T KOG0588|consen   17 GKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVLEYVPG   96 (786)
T ss_pred             cccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEEEecCC
Confidence            35568999999999998  8999999999732     335678999999999999999999999977  89999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |-|.++|          -..++|++.++.+++.||+.|+.|+|.   .+|+||||||+|+|||.++.+||+|||+|..  
T Consensus        97 GELFdyl----------v~kG~l~e~eaa~ff~QIi~gv~yCH~---~~icHRDLKpENlLLd~~~nIKIADFGMAsLe~  163 (786)
T KOG0588|consen   97 GELFDYL----------VRKGPLPEREAAHFFRQILDGVSYCHA---FNICHRDLKPENLLLDVKNNIKIADFGMASLEV  163 (786)
T ss_pred             chhHHHH----------HhhCCCCCHHHHHHHHHHHHHHHHHhh---hcceeccCCchhhhhhcccCEeeeccceeeccc
Confidence            9999999          467889999999999999999999999   5699999999999999999999999999854  


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHH
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAE  547 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~  547 (683)
                                             ..-+.++||||.|||||.||||+.||+.      .+-..+..-+.......|..++.
T Consensus       164 ~gklLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdD------dNir~LLlKV~~G~f~MPs~Is~  237 (786)
T KOG0588|consen  164 PGKLLETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDD------DNIRVLLLKVQRGVFEMPSNISS  237 (786)
T ss_pred             CCccccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCC------ccHHHHHHHHHcCcccCCCcCCH
Confidence                                   1236899999999999999999999984      22233333444456677889999


Q ss_pred             HHHHHHHHhhhcCCCccccccHHHHHHHH
Q 005680          548 ELAGIALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       548 ~l~~Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                      ++++|+.+||..|  |..|.|+.+|++.-
T Consensus       238 eaQdLLr~ml~VD--p~~RiT~~eI~kHP  264 (786)
T KOG0588|consen  238 EAQDLLRRMLDVD--PSTRITTEEILKHP  264 (786)
T ss_pred             HHHHHHHHHhccC--ccccccHHHHhhCc
Confidence            9999999999999  88999999998763

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=2.2e-34  Score=307.62  Aligned_cols=207  Identities=21%  Similarity=0.279  Sum_probs=171.5

Q ss_pred             ccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEEeecCCC
Q 005680          344 LKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       344 liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      ++|+|+||.||+|..  +++.||||++..     ......+..|..++..+ +||||+++++++.+  ..|+||||+++|
T Consensus         2 ~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~g   81 (320)
T cd05590           2 VLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNGG   81 (320)
T ss_pred             eeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCCc
Confidence            578999999999998  578999999862     22345677888888877 69999999999865  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++.   
T Consensus        82 ~L~~~i~----------~~~~l~~~~~~~~~~ql~~~L~~lH~---~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~  148 (320)
T cd05590          82 DLMFHIQ----------KSRRFDEARARFYAAEITSALMFLHD---KGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIF  148 (320)
T ss_pred             hHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCCHHHeEECCCCcEEEeeCCCCeecCc
Confidence            9999883          44568999999999999999999999   6799999999999999999999999998642   


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE  548 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~  548 (683)
                                            ..++.++|||||||++|+|++|++||.....     ...+..+. ......|..++..
T Consensus       149 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~-----~~~~~~i~-~~~~~~~~~~~~~  222 (320)
T cd05590         149 NGKTTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENE-----DDLFEAIL-NDEVVYPTWLSQD  222 (320)
T ss_pred             CCCcccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCCH-----HHHHHHHh-cCCCCCCCCCCHH
Confidence                                  2357789999999999999999999975322     11222222 2333456667889


Q ss_pred             HHHHHHHhhhcCCCccccccHHH
Q 005680          549 LAGIALKCLSADQDANRDLRIAG  571 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs~~e  571 (683)
                      +.+++.+||+.|  |..||++.+
T Consensus       223 ~~~li~~~L~~d--P~~R~~~~~  243 (320)
T cd05590         223 AVDILKAFMTKN--PTMRLGSLT  243 (320)
T ss_pred             HHHHHHHHcccC--HHHCCCCCC
Confidence            999999999999  889999744

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=2.2e-34  Score=308.82  Aligned_cols=212  Identities=23%  Similarity=0.312  Sum_probs=172.7

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEEeecCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      +++|+|+||.||+|..  ++..||||+++..     .....+..|..++..+ +||||++++++|.+  ..||||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~   80 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG   80 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            3578999999999998  5789999999732     2234578899999998 79999999999865  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++.          ....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++.  
T Consensus        81 g~L~~~~~----------~~~~l~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~  147 (329)
T cd05588          81 GDLMFHMQ----------RQRKLPEEHARFYSAEISLALNFLHE---RGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGI  147 (329)
T ss_pred             CCHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHeEECCCCCEEECcCccccccc
Confidence            99998883          44579999999999999999999999   7799999999999999999999999998742  


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHH---hhhhHHHHHHHhcCCCCCCChh
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKA---MALDQTTLMQVLDGNAGIWPLD  544 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~---~~~~~~~~~~ild~~~~~~p~~  544 (683)
                                             ..++.++|||||||++|+|+||+.||......   ...........+.......|..
T Consensus       148 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  227 (329)
T cd05588         148 RPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILEKQIRIPRS  227 (329)
T ss_pred             cCCCccccccCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCcccccccccccccchHHHHHHHHcCCCCCCCC
Confidence                                   24678999999999999999999999642110   0011112222233334456667


Q ss_pred             hHHHHHHHHHHhhhcCCCccccccH
Q 005680          545 LAEELAGIALKCLSADQDANRDLRI  569 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RPs~  569 (683)
                      ++..+.+++.+||+.|  |..||++
T Consensus       228 ~~~~~~~li~~~L~~d--P~~R~~~  250 (329)
T cd05588         228 LSVKASSVLKGFLNKD--PKERLGC  250 (329)
T ss_pred             CCHHHHHHHHHHhccC--HHHcCCC
Confidence            8889999999999999  8899983

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=2.6e-34  Score=299.30  Aligned_cols=226  Identities=25%  Similarity=0.468  Sum_probs=182.3

Q ss_pred             cccccCCceEEEEEEEC--C-----eeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeec
Q 005680          343 RLKCAGDWTNVYRGRLN--H-----ASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYM  410 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~--g-----~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~  410 (683)
                      +.+|+|+||.||+|...  +     ..||+|.+.....   ...|.+|+.++..++||||+++++++.+  ..+++|||+
T Consensus        11 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~   90 (283)
T cd05048          11 EELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTCMLFEYL   90 (283)
T ss_pred             hcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCceEEEEecC
Confidence            56789999999999873  2     5799999873332   3568899999999999999999999865  789999999


Q ss_pred             CCCCchhhhhhccccccc------ccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEec
Q 005680          411 PNGNLRDKLFTSQRNYKN------CSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISG  484 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~------~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~D  484 (683)
                      ++|+|.+++.........      ......+++..++.++.||+.||.|||+   .+|+||||||+|||++.++.+||+|
T Consensus        91 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~---~~i~H~dlkp~Nil~~~~~~~~L~d  167 (283)
T cd05048          91 AHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSS---HHFVHRDLAARNCLVGEGLTVKISD  167 (283)
T ss_pred             CCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccccccceEEEcCCCcEEECC
Confidence            999999999643211000      0112568999999999999999999999   6799999999999999999999999


Q ss_pred             CCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcC
Q 005680          485 LGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDG  536 (683)
Q Consensus       485 FGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~  536 (683)
                      ||++..                           ..++.++|||||||++|||++ |..||.....     ......+...
T Consensus       168 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~-----~~~~~~i~~~  242 (283)
T cd05048         168 FGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSN-----QEVIEMIRSR  242 (283)
T ss_pred             CcceeeccccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCH-----HHHHHHHHcC
Confidence            998742                           245778999999999999998 9999864322     1222233344


Q ss_pred             CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHH
Q 005680          537 NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDE  578 (683)
Q Consensus       537 ~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~  578 (683)
                      .....|..++..+.+|+.+||+.|  |..||++.+|++.|+.
T Consensus       243 ~~~~~~~~~~~~~~~l~~~c~~~~--p~~Rp~~~~i~~~l~~  282 (283)
T cd05048         243 QLLPCPEDCPARVYALMIECWNEI--PARRPRFKDIHTRLRS  282 (283)
T ss_pred             CcCCCcccCCHHHHHHHHHHccCC--hhhCcCHHHHHHHHhc
Confidence            445556778999999999999999  8899999999999875

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.1e-34  Score=314.50  Aligned_cols=215  Identities=17%  Similarity=0.239  Sum_probs=172.0

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      .+.+|.|+||.||++..  +|..||||++...     .....+.+|+.++..++|||||++++++.+  ..||||||++|
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~E~~~g   85 (377)
T cd05629           6 VKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIMEFLPG   85 (377)
T ss_pred             eEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEEeCCCC
Confidence            35678999999999987  6899999998621     123567889999999999999999999976  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++.          ....+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||+++.  
T Consensus        86 g~L~~~l~----------~~~~~~~~~~~~~~~ql~~aL~~LH~---~givHrDlkp~NIll~~~~~~kl~DfGla~~~~  152 (377)
T cd05629          86 GDLMTMLI----------KYDTFSEDVTRFYMAECVLAIEAVHK---LGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFH  152 (377)
T ss_pred             CcHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHEEECCCCCEEEeecccccccc
Confidence            99999993          44578999999999999999999999   6799999999999999999999999998730  


Q ss_pred             ----------------------------------------------------------------------cCCCcccccc
Q 005680          491 ----------------------------------------------------------------------DQLNVRSDIR  500 (683)
Q Consensus       491 ----------------------------------------------------------------------~~~t~ksDVw  500 (683)
                                                                                            ..++.++|||
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Diw  232 (377)
T cd05629         153 KQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWW  232 (377)
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeE
Confidence                                                                                  2367889999


Q ss_pred             cHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC-CCCCCCh--hhHHHHHHHHHHhhhcCCCcc-ccccHHHHHHH
Q 005680          501 AFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG-NAGIWPL--DLAEELAGIALKCLSADQDAN-RDLRIAGVMKE  575 (683)
Q Consensus       501 SlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~-~~~~~p~--~~~~~l~~Li~~CL~~dP~p~-~RPs~~eVl~~  575 (683)
                      ||||++|+|+||.+||.....     ...+..+... ....+|.  .++.++.+|+.+||. +|..+ .|+++.+++..
T Consensus       233 SlGvil~elltG~~Pf~~~~~-----~~~~~~i~~~~~~~~~p~~~~~s~~~~dli~~lL~-~~~~r~~r~~~~~~l~h  305 (377)
T cd05629         233 SLGAIMFECLIGWPPFCSENS-----HETYRKIINWRETLYFPDDIHLSVEAEDLIRRLIT-NAENRLGRGGAHEIKSH  305 (377)
T ss_pred             ecchhhhhhhcCCCCCCCCCH-----HHHHHHHHccCCccCCCCCCCCCHHHHHHHHHHhc-CHhhcCCCCCHHHHhcC
Confidence            999999999999999964222     1112222221 1122232  467889999999997 63322 26798888764

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=6.6e-34  Score=293.93  Aligned_cols=224  Identities=26%  Similarity=0.423  Sum_probs=183.0

Q ss_pred             cCccccccccccCCceEEEEEEEC-----CeeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceeccccc--ceeE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRLN-----HASVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCI  405 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~~-----g~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~L  405 (683)
                      ++|... +.+|+|+||.||+|.+.     ...||||.++...   ....|.+|+.++.+++||||+++++++.+  ..++
T Consensus         4 ~~~~~~-~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~i   82 (266)
T cd05033           4 SYVTIE-KVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMI   82 (266)
T ss_pred             HHceee-eEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEE
Confidence            345443 56689999999999972     3579999987432   23568899999999999999999998865  7899


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecC
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGL  485 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DF  485 (683)
                      ||||+++|+|.+++..         ....+++..+..++.|++.||.|||+   .+|+|+||||+|||++.++.++|+||
T Consensus        83 v~e~~~~~~L~~~~~~---------~~~~~~~~~~~~~~~~l~~~l~~Lh~---~~i~H~di~p~nili~~~~~~~l~df  150 (266)
T cd05033          83 ITEYMENGSLDKFLRE---------NDGKFTVGQLVGMLRGIASGMKYLSE---MNYVHRDLAARNILVNSNLVCKVSDF  150 (266)
T ss_pred             EEEcCCCCCHHHHHHh---------ccCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCcceEEEcCCCCEEECcc
Confidence            9999999999999952         23478999999999999999999999   67999999999999999999999999


Q ss_pred             CCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCC
Q 005680          486 GLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGN  537 (683)
Q Consensus       486 Gla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~  537 (683)
                      |++..                           ..++.++||||||+++|+|++ |..||.....     ......+....
T Consensus       151 g~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~-----~~~~~~~~~~~  225 (266)
T cd05033         151 GLSRRLEDSEATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMSN-----QDVIKAVEDGY  225 (266)
T ss_pred             chhhcccccccceeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCCH-----HHHHHHHHcCC
Confidence            98743                           235678999999999999998 9999854221     12223333333


Q ss_pred             CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          538 AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       538 ~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                      ..+.+..++..+.+|+.+||+.+  |..||++.+|++.|..+
T Consensus       226 ~~~~~~~~~~~l~~li~~cl~~~--p~~Rp~~~ei~~~l~~~  265 (266)
T cd05033         226 RLPPPMDCPSALYQLMLDCWQKD--RNERPTFSQIVSTLDKM  265 (266)
T ss_pred             CCCCCCCCCHHHHHHHHHHcCCC--cccCcCHHHHHHHHHhh
Confidence            44455677889999999999999  88999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=8e-34  Score=303.49  Aligned_cols=206  Identities=24%  Similarity=0.356  Sum_probs=167.9

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHH---HhcCCCCccceeccccc--ceeEEEee
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFL---TAVRHPHLVAVMGCCSE--LKCIVFEY  409 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL---~~l~HpnIV~l~g~~~~--~~~LV~Ey  409 (683)
                      .+.+|.|+||.||+|.+  +|..||||+++..     ...+.+..|+.++   +.++||||+++++++.+  ..|+||||
T Consensus         4 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv~E~   83 (324)
T cd05589           4 LAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFVMEY   83 (324)
T ss_pred             EEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEEEcC
Confidence            45778999999999998  5899999998721     2234567776665   56689999999999865  78999999


Q ss_pred             cCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCcc
Q 005680          410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNI  489 (683)
Q Consensus       410 ~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~  489 (683)
                      +++|+|..++.           ...+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++
T Consensus        84 ~~~~~L~~~~~-----------~~~l~~~~~~~~~~qi~~al~~lH~---~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~  149 (324)
T cd05589          84 AAGGDLMMHIH-----------TDVFSEPRAVFYAACVVLGLQYLHE---NKIVYRDLKLDNLLLDTEGFVKIADFGLCK  149 (324)
T ss_pred             CCCCcHHHHhh-----------cCCCCHHHHHHHHHHHHHHHHHHHh---CCeEecCCCHHHeEECCCCcEEeCcccCCc
Confidence            99999988872           3468999999999999999999999   679999999999999999999999999874


Q ss_pred             c-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChh
Q 005680          490 C-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLD  544 (683)
Q Consensus       490 ~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~  544 (683)
                      .                         ..++.++|||||||++|+|++|++||.....     ......+.. ....+|..
T Consensus       150 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~-----~~~~~~i~~-~~~~~p~~  223 (324)
T cd05589         150 EGMGFGDRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDE-----EEVFDSIVN-DEVRYPRF  223 (324)
T ss_pred             cCCCCCCcccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCCH-----HHHHHHHHh-CCCCCCCC
Confidence            2                         2467789999999999999999999964322     112222222 23345667


Q ss_pred             hHHHHHHHHHHhhhcCCCccccccH
Q 005680          545 LAEELAGIALKCLSADQDANRDLRI  569 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RPs~  569 (683)
                      ++..+.+++.+||+.|  |..||++
T Consensus       224 ~~~~~~~li~~~L~~d--P~~R~~~  246 (324)
T cd05589         224 LSREAISIMRRLLRRN--PERRLGS  246 (324)
T ss_pred             CCHHHHHHHHHHhhcC--HhHcCCC
Confidence            8899999999999999  7899953

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=5.8e-34  Score=303.93  Aligned_cols=206  Identities=21%  Similarity=0.257  Sum_probs=167.7

Q ss_pred             ccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHH-HHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          344 LKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVS-FLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       344 liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~-iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      ++|+|+||.||+|..  +|..||||++...     .....+..|.. +++.++|||||++++++.+  ..|+||||+++|
T Consensus         2 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~   81 (321)
T cd05603           2 VIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNGG   81 (321)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCCC
Confidence            578999999999998  5789999998621     12234555654 5788999999999998865  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|..++.          ....+++..+..++.||+.||.|||+   .+|+||||||+||||+.++.+||+|||+++.   
T Consensus        82 ~L~~~l~----------~~~~~~~~~~~~~~~qi~~~L~~lH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~  148 (321)
T cd05603          82 ELFFHLQ----------RERCFLEPRARFYAAEVASAIGYLHS---LNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVE  148 (321)
T ss_pred             CHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeEECCCCCEEEccCCCCccCCC
Confidence            9998883          44568899999999999999999999   6799999999999999999999999998742   


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE  548 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~  548 (683)
                                            ..++.++|||||||++|+|++|.+||.....     ......+.. .....|...+..
T Consensus       149 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-----~~~~~~i~~-~~~~~~~~~~~~  222 (321)
T cd05603         149 PEETTSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDV-----SQMYDNILH-KPLQLPGGKTVA  222 (321)
T ss_pred             CCCccccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCCH-----HHHHHHHhc-CCCCCCCCCCHH
Confidence                                  2467899999999999999999999964321     111222222 234456677889


Q ss_pred             HHHHHHHhhhcCCCccccccHH
Q 005680          549 LAGIALKCLSADQDANRDLRIA  570 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs~~  570 (683)
                      +.+++.+||+.|  |.+||++.
T Consensus       223 ~~~li~~~l~~~--p~~R~~~~  242 (321)
T cd05603         223 ACDLLVGLLHKD--QRRRLGAK  242 (321)
T ss_pred             HHHHHHHHccCC--HhhcCCCC
Confidence            999999999999  78999864

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=8.6e-34  Score=296.25  Aligned_cols=219  Identities=19%  Similarity=0.320  Sum_probs=178.9

Q ss_pred             cccccCCceEEEEEEE--CCe----eEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHA----SVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMPN  412 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~----~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~g  412 (683)
                      +.+|.|+||.||+|.+  +|.    .|++|.+.....   ...+..|+.++++++|||||+++|++.. ..++|+||+++
T Consensus        13 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~~~~~~i~e~~~~   92 (279)
T cd05111          13 KLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICPGASLQLVTQLSPL   92 (279)
T ss_pred             cccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEECCCccEEEEEeCCC
Confidence            5678999999999998  454    588888863322   2467778889999999999999999866 67899999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++..         ....+++..+..|+.||+.||.|||+   .+++||||||+|||++.++.+||+|||+++.  
T Consensus        93 gsL~~~l~~---------~~~~~~~~~~~~i~~qi~~~l~~lH~---~~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~  160 (279)
T cd05111          93 GSLLDHVRQ---------HRDSLDPQRLLNWCVQIAKGMYYLEE---HRMVHRNLAARNILLKSDSIVQIADFGVADLLY  160 (279)
T ss_pred             CcHHHHHHh---------cccCCCHHHHHHHHHHHHHHHHHHHH---CCEeccccCcceEEEcCCCcEEEcCCccceecc
Confidence            999999952         23568999999999999999999999   6799999999999999999999999998742  


Q ss_pred             -------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhc-CCCCCCCh
Q 005680          491 -------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLD-GNAGIWPL  543 (683)
Q Consensus       491 -------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild-~~~~~~p~  543 (683)
                                               ..++.++|||||||++|||++ |..||.....      ..+..++. ......+.
T Consensus       161 ~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~------~~~~~~~~~~~~~~~~~  234 (279)
T cd05111         161 PDDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRP------HEVPDLLEKGERLAQPQ  234 (279)
T ss_pred             CCCcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCH------HHHHHHHHCCCcCCCCC
Confidence                                     236778999999999999998 9999864321      11222222 22333344


Q ss_pred             hhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHH
Q 005680          544 DLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRK  581 (683)
Q Consensus       544 ~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~  581 (683)
                      .++..+..++.+||..|  |..|||+.+++..|..+.+
T Consensus       235 ~~~~~~~~li~~c~~~~--p~~Rps~~el~~~l~~~~~  270 (279)
T cd05111         235 ICTIDVYMVMVKCWMID--ENVRPTFKELANEFTRMAR  270 (279)
T ss_pred             CCCHHHHHHHHHHcCCC--cccCcCHHHHHHHHHHHHh
Confidence            56778999999999999  8899999999999988765

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=6.3e-34  Score=296.46  Aligned_cols=222  Identities=21%  Similarity=0.353  Sum_probs=181.5

Q ss_pred             ccccccCCceEEEEEEE--CCe----eEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHA----SVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMP  411 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~----~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~  411 (683)
                      .+.+|.|+||.||+|.+  +|.    .||+|++.....   ...+.+|+.++..+.||||++++++|.. ..+++|+|++
T Consensus        12 ~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~l~~~~~~   91 (279)
T cd05109          12 VKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLTSTVQLVTQLMP   91 (279)
T ss_pred             eeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCCCcEEEEEcCC
Confidence            35678999999999986  444    589999873322   3568899999999999999999999966 7789999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      +|+|.+++..         ....+++..++.++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++. 
T Consensus        92 ~g~l~~~l~~---------~~~~~~~~~~~~~~~qi~~~L~~lH~---~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~  159 (279)
T cd05109          92 YGCLLDYVRE---------NKDRIGSQDLLNWCVQIAKGMSYLEE---VRLVHRDLAARNVLVKSPNHVKITDFGLARLL  159 (279)
T ss_pred             CCCHHHHHhh---------ccCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccccceEEEcCCCcEEECCCCceeec
Confidence            9999999842         23468999999999999999999999   7799999999999999999999999998742 


Q ss_pred             --------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhc-CCCCCCC
Q 005680          491 --------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLD-GNAGIWP  542 (683)
Q Consensus       491 --------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild-~~~~~~p  542 (683)
                                                ..++.++|||||||++|||++ |.+||.....      ..+...+. ......+
T Consensus       160 ~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~------~~~~~~~~~~~~~~~~  233 (279)
T cd05109         160 DIDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPA------REIPDLLEKGERLPQP  233 (279)
T ss_pred             ccccceeecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCH------HHHHHHHHCCCcCCCC
Confidence                                      235678999999999999998 8999864221      11222222 2233445


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      ..++..+.+++.+||..|  |..||++.+++..|..+.+..
T Consensus       234 ~~~~~~~~~li~~~l~~d--p~~Rp~~~~l~~~l~~~~~~~  272 (279)
T cd05109         234 PICTIDVYMIMVKCWMID--SECRPRFRELVDEFSRMARDP  272 (279)
T ss_pred             ccCCHHHHHHHHHHcCCC--hhhCcCHHHHHHHHHHhhcCC
Confidence            567889999999999999  789999999999998886543

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=6.9e-34  Score=292.98  Aligned_cols=218  Identities=28%  Similarity=0.465  Sum_probs=180.5

Q ss_pred             cccccCCceEEEEEEE-CCeeEEEEEcCC-CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCchhh
Q 005680          343 RLKCAGDWTNVYRGRL-NHASVAIKTLNN-GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRDK  418 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~-~g~~VAvK~l~~-~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~~  418 (683)
                      +.+|.|+||.||+|.+ ++..||||.++. ......+.+|+.++++++||||+++++++..  ..++||||+++++|.++
T Consensus        12 ~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~   91 (261)
T cd05068          12 RKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTMDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTELMKYGSLLEY   91 (261)
T ss_pred             EEecccCCccEEEEEecCCeEEEEEeeCCCcccHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeeecccCCcHHHH
Confidence            5678999999999998 567899999873 3345789999999999999999999998865  78999999999999999


Q ss_pred             hhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--------
Q 005680          419 LFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--------  490 (683)
Q Consensus       419 L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--------  490 (683)
                      +...        ....+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||++..        
T Consensus        92 ~~~~--------~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~  160 (261)
T cd05068          92 LQGG--------AGRALKLPQLIDMAAQVASGMAYLEA---QNYIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEA  160 (261)
T ss_pred             Hhcc--------CCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCCcceEEEcCCCCEEECCcceEEEccCCcccc
Confidence            9432        23468999999999999999999999   6799999999999999999999999998742        


Q ss_pred             ------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHH
Q 005680          491 ------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAG  551 (683)
Q Consensus       491 ------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~  551 (683)
                                        ..++.++||||||+++|+|+| |+.||.....     ...+..+........+..++..+.+
T Consensus       161 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  235 (261)
T cd05068         161 REGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTN-----AEVLQQVDQGYRMPCPPGCPKELYD  235 (261)
T ss_pred             cCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH-----HHHHHHHHcCCCCCCCCcCCHHHHH
Confidence                              134678999999999999999 9999864221     1112222222223345567889999


Q ss_pred             HHHHhhhcCCCccccccHHHHHHHHHH
Q 005680          552 IALKCLSADQDANRDLRIAGVMKELDE  578 (683)
Q Consensus       552 Li~~CL~~dP~p~~RPs~~eVl~~L~~  578 (683)
                      ++.+||+.+  |..||++.+++..|+.
T Consensus       236 li~~~l~~~--P~~Rp~~~~l~~~l~~  260 (261)
T cd05068         236 IMLDCWKED--PDDRPTFETLQWKLED  260 (261)
T ss_pred             HHHHHhhcC--cccCCCHHHHHHHHhc
Confidence            999999999  8899999999999875

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=3.3e-34  Score=313.76  Aligned_cols=218  Identities=18%  Similarity=0.241  Sum_probs=175.2

Q ss_pred             ccccccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeec
Q 005680          340 ERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYM  410 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~  410 (683)
                      ...+.+|+|+||.||+|..  ++..||||++...     .....+.+|+.++..++|||||++++++.+  ..|+||||+
T Consensus         4 ~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E~~   83 (381)
T cd05626           4 VKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYI   83 (381)
T ss_pred             eEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEecC
Confidence            3456789999999999998  6789999999632     123568899999999999999999999966  789999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~  490 (683)
                      +||+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+||||+.++++||+|||++..
T Consensus        84 ~gg~L~~~l~----------~~~~~~e~~~~~~~~qi~~aL~~LH~---~givHrDlKp~Nili~~~~~~kL~DFGl~~~  150 (381)
T cd05626          84 PGGDMMSLLI----------RMEVFPEVLARFYIAELTLAIESVHK---MGFIHRDIKPDNILIDLDGHIKLTDFGLCTG  150 (381)
T ss_pred             CCCcHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCcHHHEEECCCCCEEEeeCcCCcc
Confidence            9999999993          44568999999999999999999999   6799999999999999999999999998520


Q ss_pred             ------------------------------------------------------------------------cCCCcccc
Q 005680          491 ------------------------------------------------------------------------DQLNVRSD  498 (683)
Q Consensus       491 ------------------------------------------------------------------------~~~t~ksD  498 (683)
                                                                                              ..++.++|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~D  230 (381)
T cd05626         151 FRWTHNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCD  230 (381)
T ss_pred             cccccccccccccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccc
Confidence                                                                                    24678999


Q ss_pred             cccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC-CCCCCC--hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          499 IRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG-NAGIWP--LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       499 VwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~-~~~~~p--~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ||||||++|||+||.+||.....     ......++.. .....|  ..+++++.+|+.+|+..++++..||++.+++..
T Consensus       231 iwSlG~il~elltG~~Pf~~~~~-----~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~~ll~~~~~~~~R~~~~~~l~h  305 (381)
T cd05626         231 WWSVGVILFEMLVGQPPFLAPTP-----TETQLKVINWENTLHIPPQVKLSPEAVDLITKLCCSAEERLGRNGADDIKAH  305 (381)
T ss_pred             eeehhhHHHHHHhCCCCCcCCCH-----HHHHHHHHccccccCCCCCCCCCHHHHHHHHHHccCcccccCCCCHHHHhcC
Confidence            99999999999999999965322     1111222221 112222  256889999999966555556679999998764

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=6.9e-34  Score=292.99  Aligned_cols=216  Identities=24%  Similarity=0.421  Sum_probs=178.7

Q ss_pred             cccccCCceEEEEEEECC-eeEEEEEcCC-CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCchhh
Q 005680          343 RLKCAGDWTNVYRGRLNH-ASVAIKTLNN-GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRDK  418 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g-~~VAvK~l~~-~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~~  418 (683)
                      +.+|+|+||.||+|.+.+ ..||||.+.. ......+.+|+.++.+++||||++++++|.+  ..++||||+++|+|.++
T Consensus        10 ~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~   89 (256)
T cd05113          10 KELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSNGCLLNY   89 (256)
T ss_pred             eEecCcccceEEEEEecCCCcEEEEEcCCCcccHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcCCCCcHHHH
Confidence            456899999999998854 5699999873 3345789999999999999999999999865  67999999999999999


Q ss_pred             hhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--------
Q 005680          419 LFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--------  490 (683)
Q Consensus       419 L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--------  490 (683)
                      +...         ...+++..++.++.||+.||.|||+   .+++|+||||+|||++.++.+||+|||+++.        
T Consensus        90 i~~~---------~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~  157 (256)
T cd05113          90 LREH---------GKRFQPSQLLEMCKDVCEGMAYLES---KQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTS  157 (256)
T ss_pred             HHhc---------CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccccCcceEEEcCCCCEEECCCccceecCCCceee
Confidence            8422         2368999999999999999999999   6799999999999999999999999998642        


Q ss_pred             ------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHH
Q 005680          491 ------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAG  551 (683)
Q Consensus       491 ------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~  551 (683)
                                        ..++.++|||||||++|+|++ |..||.....     ......+........+...+..+.+
T Consensus       158 ~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  232 (256)
T cd05113         158 SVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNN-----SETVEKVSQGLRLYRPHLASEKVYA  232 (256)
T ss_pred             cCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCH-----HHHHHHHhcCCCCCCCCCCCHHHHH
Confidence                              235778999999999999999 9999864322     1122233333333445556789999


Q ss_pred             HHHHhhhcCCCccccccHHHHHHHHH
Q 005680          552 IALKCLSADQDANRDLRIAGVMKELD  577 (683)
Q Consensus       552 Li~~CL~~dP~p~~RPs~~eVl~~L~  577 (683)
                      ++.+||+.+  |..||++.+++..|+
T Consensus       233 li~~cl~~~--p~~Rp~~~~ll~~~~  256 (256)
T cd05113         233 IMYSCWHEK--AEERPTFQQLLSSIE  256 (256)
T ss_pred             HHHHHcCCC--cccCCCHHHHHHhhC
Confidence            999999999  889999999988763

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=8.2e-34  Score=308.46  Aligned_cols=215  Identities=17%  Similarity=0.253  Sum_probs=171.5

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      .+.+|.|+||.||+|..  +++.||||++...     .....+..|+.++..++||||+++++++.+  ..||||||++|
T Consensus         6 ~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~E~~~g   85 (363)
T cd05628           6 LKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIMEFLPG   85 (363)
T ss_pred             eEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEEcCCCC
Confidence            46778999999999988  5889999998632     223567889999999999999999999876  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++.  
T Consensus        86 g~L~~~l~----------~~~~l~~~~~~~~~~qi~~aL~~lH~---~givHrDlKp~NILi~~~~~vkL~DFGla~~~~  152 (363)
T cd05628          86 GDMMTLLM----------KKDTLTEEETQFYIAETVLAIDSIHQ---LGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLK  152 (363)
T ss_pred             CcHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHh---CCeEecCCCHHHeEECCCCCEEEeeccCccccc
Confidence            99999993          44679999999999999999999999   7799999999999999999999999998631  


Q ss_pred             ----------------------------------------------------------cCCCcccccccHHHHHHHHhhC
Q 005680          491 ----------------------------------------------------------DQLNVRSDIRAFGTLLLHLLTG  512 (683)
Q Consensus       491 ----------------------------------------------------------~~~t~ksDVwSlGviL~eLltG  512 (683)
                                                                                ..++.++|||||||++|+|++|
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G  232 (363)
T cd05628         153 KAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIG  232 (363)
T ss_pred             ccccccccccccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhC
Confidence                                                                      2367889999999999999999


Q ss_pred             CCCchhhHHHhhhhHHHHHHHhcC-CCCCCCh--hhHHHHHHHHHHhhhcCCCc-cccccHHHHHHH
Q 005680          513 RNWAGLVEKAMALDQTTLMQVLDG-NAGIWPL--DLAEELAGIALKCLSADQDA-NRDLRIAGVMKE  575 (683)
Q Consensus       513 ~~Pf~~~~~~~~~~~~~~~~ild~-~~~~~p~--~~~~~l~~Li~~CL~~dP~p-~~RPs~~eVl~~  575 (683)
                      ++||.....     ......+... ....+|.  .+++.+.+++.+++. +|.. ..||++.+++..
T Consensus       233 ~~Pf~~~~~-----~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~~-~~~~r~~r~~~~ei~~h  293 (363)
T cd05628         233 YPPFCSETP-----QETYKKVMNWKETLIFPPEVPISEKAKDLILRFCC-EWEHRIGAPGVEEIKTN  293 (363)
T ss_pred             CCCCCCCCH-----HHHHHHHHcCcCcccCCCcCCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhCC
Confidence            999964321     1222223221 1112222  357889999988664 3222 257899998765

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-34  Score=314.12  Aligned_cols=232  Identities=22%  Similarity=0.408  Sum_probs=195.8

Q ss_pred             HHHHHhhcCccccccccccCCceEEEEEEEC--CeeEEEEEcCC-CCCHHHHHHHHHHHHhcCCCCccceeccccc--ce
Q 005680          329 EDIRLATEDFSERFRLKCAGDWTNVYRGRLN--HASVAIKTLNN-GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LK  403 (683)
Q Consensus       329 ~ei~~at~~F~~~~~liG~G~fG~Vykg~~~--g~~VAvK~l~~-~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~  403 (683)
                      +++.....+..-..+++ +|-||.||.|.|.  ...||||.++. ....++|+.|..+|+.|+|||+|+|+|+|..  .+
T Consensus       260 DkWEmeRtdItMkhKLG-GGQYGeVYeGvWKkyslTvAVKtLKEDtMeveEFLkEAAvMKeikHpNLVqLLGVCT~EpPF  338 (1157)
T KOG4278|consen  260 DKWEMERTDITMKHKLG-GGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPF  338 (1157)
T ss_pred             chhhccchheeeeeccC-CCcccceeeeeeeccceeeehhhhhhcchhHHHHHHHHHHHHhhcCccHHHHhhhhccCCCe
Confidence            33444444444455564 6889999999994  57899999984 4456899999999999999999999999966  88


Q ss_pred             eEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEe
Q 005680          404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKIS  483 (683)
Q Consensus       404 ~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~  483 (683)
                      |||+|||.+|+|.+||...        ....++--..+.++.||+.|+.||..   +++|||||...|+|+..+..+||+
T Consensus       339 YIiTEfM~yGNLLdYLRec--------nr~ev~avvLlyMAtQIsSaMeYLEk---knFIHRDLAARNCLVgEnhiVKvA  407 (1157)
T KOG4278|consen  339 YIITEFMCYGNLLDYLREC--------NRSEVPAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHIVKVA  407 (1157)
T ss_pred             EEEEecccCccHHHHHHHh--------chhhcchhHHHHHHHHHHHHHHHHHH---hhhhhhhhhhhhccccccceEEee
Confidence            9999999999999999654        44556777788899999999999999   889999999999999999999999


Q ss_pred             cCCCccc--------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhc-
Q 005680          484 GLGLNIC--------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLD-  535 (683)
Q Consensus       484 DFGla~~--------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild-  535 (683)
                      ||||++.                          +.++.|+|||+|||+|||+.| |..||..++      ...+..++. 
T Consensus       408 DFGLsRlMtgDTYTAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGid------lSqVY~LLEk  481 (1157)
T KOG4278|consen  408 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGID------LSQVYGLLEK  481 (1157)
T ss_pred             ccchhhhhcCCceecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCcc------HHHHHHHHhc
Confidence            9999875                          346789999999999999999 888887643      333444444 


Q ss_pred             CCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          536 GNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       536 ~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      +.+..-|..|++.+..|++.||+.+  |.+||+++++...++.+.
T Consensus       482 gyRM~~PeGCPpkVYeLMraCW~Ws--PsDRPsFaeiHqafEtmf  524 (1157)
T KOG4278|consen  482 GYRMDGPEGCPPKVYELMRACWNWS--PSDRPSFAEIHQAFETMF  524 (1157)
T ss_pred             cccccCCCCCCHHHHHHHHHHhcCC--cccCccHHHHHHHHHHHh
Confidence            4677788899999999999999999  889999999999998774

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=1.3e-34  Score=308.55  Aligned_cols=208  Identities=21%  Similarity=0.272  Sum_probs=172.8

Q ss_pred             cccccCCceEEEEEEE-----CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          343 RLKCAGDWTNVYRGRL-----NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~-----~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      +.+|+|+||.||++..     +|..||+|++...    .....+..|+.+|.+++||||+++++++.+  ..|+||||++
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~   81 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLR   81 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCC
Confidence            4678999999999875     4789999998722    223457789999999999999999999865  7899999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      +|+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++.. 
T Consensus        82 ~~~L~~~l~----------~~~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~  148 (318)
T cd05582          82 GGDLFTRLS----------KEVMFTEEDVKFYLAELALALDHLHS---LGIIYRDLKPENILLDEEGHIKLTDFGLSKES  148 (318)
T ss_pred             CCcHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHeEECCCCcEEEeeccCCccc
Confidence            999999983          44568999999999999999999999   6799999999999999999999999998743 


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhH
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLA  546 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~  546 (683)
                                              ..++.++|||||||++|+|+||+.||.....     ...+..+. ......|..++
T Consensus       149 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~-----~~~~~~i~-~~~~~~p~~~~  222 (318)
T cd05582         149 IDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDR-----KETMTMIL-KAKLGMPQFLS  222 (318)
T ss_pred             CCCCCceecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCCCH-----HHHHHHHH-cCCCCCCCCCC
Confidence                                    2357899999999999999999999964322     11222222 22334566788


Q ss_pred             HHHHHHHHHhhhcCCCccccccHHH
Q 005680          547 EELAGIALKCLSADQDANRDLRIAG  571 (683)
Q Consensus       547 ~~l~~Li~~CL~~dP~p~~RPs~~e  571 (683)
                      +.+.+|+.+||+.|  |..||++.+
T Consensus       223 ~~~~~li~~~l~~~--P~~R~~a~~  245 (318)
T cd05582         223 PEAQSLLRALFKRN--PANRLGAGP  245 (318)
T ss_pred             HHHHHHHHHHhhcC--HhHcCCCCC
Confidence            99999999999999  889999655

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=3.3e-34  Score=307.66  Aligned_cols=212  Identities=24%  Similarity=0.322  Sum_probs=172.0

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEEeecCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      +++|+|+||.||+|..  ++..||+|++...     .....+..|+.++.++ +|||||++++++.+  ..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~   80 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG   80 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence            3679999999999998  5789999998732     1234577899888877 89999999999865  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|..++.          ....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++.  
T Consensus        81 ~~L~~~~~----------~~~~l~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~  147 (329)
T cd05618          81 GDLMFHMQ----------RQRKLPEEHARFYSAEISLALNYLHE---RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGL  147 (329)
T ss_pred             CCHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEECCCCCEEEeeCCcccccc
Confidence            99998883          44579999999999999999999999   6799999999999999999999999998742  


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHH---hhhhHHHHHHHhcCCCCCCChh
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKA---MALDQTTLMQVLDGNAGIWPLD  544 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~---~~~~~~~~~~ild~~~~~~p~~  544 (683)
                                             ..++.++|||||||++|+|++|+.||......   .......+...+.......|..
T Consensus       148 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~  227 (329)
T cd05618         148 RPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRS  227 (329)
T ss_pred             CCCCccccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHhcCCCCCCCC
Confidence                                   23578999999999999999999999532111   0011122223333334456777


Q ss_pred             hHHHHHHHHHHhhhcCCCccccccH
Q 005680          545 LAEELAGIALKCLSADQDANRDLRI  569 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RPs~  569 (683)
                      ++..+.+|+.+||+.|  |..||++
T Consensus       228 ~~~~~~~ll~~~L~~d--P~~R~~~  250 (329)
T cd05618         228 LSVKAASVLKSFLNKD--PKERLGC  250 (329)
T ss_pred             CCHHHHHHHHHHhcCC--HHHcCCC
Confidence            8899999999999999  8899984

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=7.8e-34  Score=292.04  Aligned_cols=215  Identities=24%  Similarity=0.395  Sum_probs=178.8

Q ss_pred             cccccCCceEEEEEEE-CCeeEEEEEcCC-CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCchhh
Q 005680          343 RLKCAGDWTNVYRGRL-NHASVAIKTLNN-GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRDK  418 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~-~g~~VAvK~l~~-~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~~  418 (683)
                      +.+|+|+||.||+|.+ .+..+|+|.+.. ......+.+|+.+++.++||||+++++++.+  ..++||||+++++|.++
T Consensus        10 ~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~   89 (256)
T cd05059          10 KELGSGQFGVVHLGKWRGKIDVAIKMIREGAMSEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMANGCLLNY   89 (256)
T ss_pred             hhhccCCCceEEEeEecCCccEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecCCCCCHHHH
Confidence            4678999999999988 456899999873 3445678999999999999999999999865  78999999999999999


Q ss_pred             hhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--------
Q 005680          419 LFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--------  490 (683)
Q Consensus       419 L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--------  490 (683)
                      +...         ...+++..+..++.||+.||.|||+   .+|+||||||+||+++.++.+||+|||+++.        
T Consensus        90 l~~~---------~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~~  157 (256)
T cd05059          90 LRER---------KGKLGTEWLLDMCSDVCEAMEYLES---NGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTS  157 (256)
T ss_pred             HHhc---------ccCCCHHHHHHHHHHHHHHHHHHHH---CCcccccccHhhEEECCCCcEEECCcccceecccccccc
Confidence            9522         3468999999999999999999999   6799999999999999999999999998742        


Q ss_pred             ------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHH
Q 005680          491 ------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAG  551 (683)
Q Consensus       491 ------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~  551 (683)
                                        ..++.++||||||+++|+|++ |.+||.....     ......+........|..++..+.+
T Consensus       158 ~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  232 (256)
T cd05059         158 SQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSN-----SEVVESVSAGYRLYRPKLAPTEVYT  232 (256)
T ss_pred             cCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCH-----HHHHHHHHcCCcCCCCCCCCHHHHH
Confidence                              245678999999999999999 8899864322     1122223223334455668899999


Q ss_pred             HHHHhhhcCCCccccccHHHHHHHH
Q 005680          552 IALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       552 Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                      ++.+||..+  |..|||+.++++.|
T Consensus       233 li~~cl~~~--p~~Rpt~~~~l~~l  255 (256)
T cd05059         233 IMYSCWHEK--PEDRPAFKKLLSQL  255 (256)
T ss_pred             HHHHHhcCC--hhhCcCHHHHHHHh
Confidence            999999999  77999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=6.9e-34  Score=291.80  Aligned_cols=218  Identities=22%  Similarity=0.356  Sum_probs=182.5

Q ss_pred             ccccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecCCCCchhhhh
Q 005680          342 FRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMPNGNLRDKLF  420 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~ggsL~~~L~  420 (683)
                      .+++|.|+||.||+|..++..||+|.+........+.+|+.++++++||||+++++++.. ..++||||+++|+|.+++.
T Consensus        11 ~~~lg~g~~g~v~~~~~~~~~~~iK~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~v~e~~~~~~L~~~l~   90 (254)
T cd05083          11 GEIIGEGEFGAVLQGEYTGQKVAVKNIKCDVTAQAFLEETAVMTKLHHKNLVRLLGVILHNGLYIVMELMSKGNLVNFLR   90 (254)
T ss_pred             eeeeccCCCCceEecccCCCceEEEeecCcchHHHHHHHHHHHHhCCCCCcCeEEEEEcCCCcEEEEECCCCCCHHHHHH
Confidence            356789999999999999999999999865566789999999999999999999999866 7899999999999999995


Q ss_pred             hcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----------
Q 005680          421 TSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----------  490 (683)
Q Consensus       421 ~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----------  490 (683)
                      ..        ....+++..+..++.|++.||.|||+   .+++||||||+|||++.++.+||+|||++..          
T Consensus        91 ~~--------~~~~~~~~~~~~~~~qi~~al~~lH~---~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~  159 (254)
T cd05083          91 TR--------GRALVSVIQLLQFSLDVAEGMEYLES---KKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDNSKL  159 (254)
T ss_pred             hc--------CcCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccccCcceEEEcCCCcEEECCCccceeccccCCCCCC
Confidence            32        23468999999999999999999999   6799999999999999999999999998753          


Q ss_pred             ------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhh
Q 005680          491 ------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCL  557 (683)
Q Consensus       491 ------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL  557 (683)
                                  ..++.++|||||||++|+|++ |++||......     .....+........+..++..+.+++.+||
T Consensus       160 ~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  234 (254)
T cd05083         160 PVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSLK-----EVKECVEKGYRMEPPEGCPADVYVLMTSCW  234 (254)
T ss_pred             CceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCHH-----HHHHHHhCCCCCCCCCcCCHHHHHHHHHHc
Confidence                        346678999999999999998 99998643221     111222222333445567889999999999


Q ss_pred             hcCCCccccccHHHHHHHHH
Q 005680          558 SADQDANRDLRIAGVMKELD  577 (683)
Q Consensus       558 ~~dP~p~~RPs~~eVl~~L~  577 (683)
                      +.+  |..||++.+++..|+
T Consensus       235 ~~~--p~~Rp~~~~l~~~l~  252 (254)
T cd05083         235 ETE--PKKRPSFHKLREKLE  252 (254)
T ss_pred             CCC--hhhCcCHHHHHHHHc
Confidence            999  779999999998875

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.5e-34  Score=307.21  Aligned_cols=214  Identities=17%  Similarity=0.242  Sum_probs=174.6

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      .+.+|.|+||.||+|..  +|..||||++...     .....+..|+.++..++||||+++++++.+  ..||||||++|
T Consensus         6 ~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~g   85 (333)
T cd05600           6 LTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAMEYVPG   85 (333)
T ss_pred             EEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEEeCCCC
Confidence            35678999999999998  5789999998722     223568899999999999999999999866  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..  
T Consensus        86 ~~L~~~l~----------~~~~l~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~  152 (333)
T cd05600          86 GDFRTLLN----------NLGVLSEDHARFYMAEMFEAVDALHE---LGYIHRDLKPENFLIDASGHIKLTDFGLSKGIV  152 (333)
T ss_pred             CCHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEECCCCCEEEEeCcCCcccc
Confidence            99999993          44578999999999999999999999   6799999999999999999999999998853  


Q ss_pred             --------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhc---C-CCCCCC---h
Q 005680          491 --------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLD---G-NAGIWP---L  543 (683)
Q Consensus       491 --------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild---~-~~~~~p---~  543 (683)
                                          ..++.++|||||||++|+|++|.+||......     ..+..+..   . ..+.+.   .
T Consensus       153 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~  227 (333)
T cd05600         153 TYANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPN-----ETWENLKYWKETLQRPVYDDPRF  227 (333)
T ss_pred             cccCCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCHH-----HHHHHHHhccccccCCCCCcccc
Confidence                                34688999999999999999999999643221     11111111   0 011111   2


Q ss_pred             hhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          544 DLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       544 ~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .++.++.+|+.+||..+  |.+||++.+++..
T Consensus       228 ~~s~~~~~li~~~l~~~--~~rr~s~~~ll~h  257 (333)
T cd05600         228 NLSDEAWDLITKLINDP--SRRFGSLEDIKNH  257 (333)
T ss_pred             ccCHHHHHHHHHHhhCh--hhhcCCHHHHHhC
Confidence            45789999999999987  7899999988764

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=6.5e-34  Score=292.50  Aligned_cols=218  Identities=28%  Similarity=0.443  Sum_probs=183.3

Q ss_pred             cccccCCceEEEEEEE-CCeeEEEEEcCCCC--CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCchh
Q 005680          343 RLKCAGDWTNVYRGRL-NHASVAIKTLNNGL--SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRD  417 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~-~g~~VAvK~l~~~~--~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~  417 (683)
                      +.+|.|+||.||+|.+ .+..||+|.+....  ....+..|+.+++.++||||+++++++.+  ..++||||+++|+|.+
T Consensus        12 ~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~   91 (261)
T cd05148          12 RKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITELMEKGSLLA   91 (261)
T ss_pred             hhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEeecccCCHHH
Confidence            5668999999999998 57899999997333  35678999999999999999999999866  7899999999999999


Q ss_pred             hhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-------
Q 005680          418 KLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-------  490 (683)
Q Consensus       418 ~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-------  490 (683)
                      ++...        ....+++..+..++.||+.||.|||+   .+|+|+||||+||+++.++.+||+|||++..       
T Consensus        92 ~~~~~--------~~~~~~~~~~~~~~~~i~~al~~lH~---~~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~~  160 (261)
T cd05148          92 FLRSP--------EGQVLPVASLIDMACQVAEGMAYLEE---QNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYL  160 (261)
T ss_pred             HHhcC--------CCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccCcceEEEcCCceEEEccccchhhcCCcccc
Confidence            99533        33568999999999999999999999   6799999999999999999999999998742       


Q ss_pred             ------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHH
Q 005680          491 ------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAG  551 (683)
Q Consensus       491 ------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~  551 (683)
                                        ..++.++||||||+++|+|++ |+.||.....     ...+..+........+..+++.+.+
T Consensus       161 ~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  235 (261)
T cd05148         161 SSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNN-----HEVYDQITAGYRMPCPAKCPQEIYK  235 (261)
T ss_pred             ccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCH-----HHHHHHHHhCCcCCCCCCCCHHHHH
Confidence                              235678999999999999998 8999864321     2223333344444556678899999


Q ss_pred             HHHHhhhcCCCccccccHHHHHHHHHH
Q 005680          552 IALKCLSADQDANRDLRIAGVMKELDE  578 (683)
Q Consensus       552 Li~~CL~~dP~p~~RPs~~eVl~~L~~  578 (683)
                      ++.+||..|  |..|||+.++++.|+.
T Consensus       236 ~i~~~l~~~--p~~Rpt~~~l~~~L~~  260 (261)
T cd05148         236 IMLECWAAE--PEDRPSFKALREELDN  260 (261)
T ss_pred             HHHHHcCCC--chhCcCHHHHHHHHhc
Confidence            999999999  7799999999999975

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=7.6e-34  Score=291.50  Aligned_cols=218  Identities=26%  Similarity=0.424  Sum_probs=182.1

Q ss_pred             cccccCCceEEEEEEECCeeEEEEEcCCCCC-HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCchhhh
Q 005680          343 RLKCAGDWTNVYRGRLNHASVAIKTLNNGLS-EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRDKL  419 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~-~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~~L  419 (683)
                      +.+|.|+||.||+|...|+.||||.+..... ...+.+|+.+++.++|+||+++++++.+  ..++||||+++++|.+++
T Consensus        12 ~~ig~g~~g~v~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~   91 (256)
T cd05039          12 ATIGKGEFGDVMLGDYRGQKVAVKCLKDDSTAAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYL   91 (256)
T ss_pred             eeeecCCCceEEEEEecCcEEEEEEeccchhHHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEecCCCcHHHHH
Confidence            5678999999999999999999999984433 5789999999999999999999999864  789999999999999999


Q ss_pred             hhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---------
Q 005680          420 FTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---------  490 (683)
Q Consensus       420 ~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---------  490 (683)
                      ...        ....+++..+..++.|++.||.|||+   .+|+|+||||+||+++.++.+||+|||++..         
T Consensus        92 ~~~--------~~~~~~~~~~~~~~~qi~~~l~~lh~---~~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~~~~  160 (256)
T cd05039          92 RSR--------GRAVITLAQQLGFALDVCEGMEYLEE---KNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDSGK  160 (256)
T ss_pred             Hhc--------CCCCCCHHHHHHHHHHHHHHHHHHHh---CCccchhcccceEEEeCCCCEEEcccccccccccccccCC
Confidence            432        22368999999999999999999999   6799999999999999999999999998753         


Q ss_pred             -------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHh
Q 005680          491 -------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKC  556 (683)
Q Consensus       491 -------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~C  556 (683)
                                   ..++.++||||||+++|+|++ |..||.....     ......+........+..+++.+.+++.+|
T Consensus       161 ~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  235 (256)
T cd05039         161 LPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL-----KDVVPHVEKGYRMEAPEGCPPEVYKVMKDC  235 (256)
T ss_pred             CcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCH-----HHHHHHHhcCCCCCCccCCCHHHHHHHHHH
Confidence                         245678999999999999997 9999864322     111112222223344556788999999999


Q ss_pred             hhcCCCccccccHHHHHHHHHH
Q 005680          557 LSADQDANRDLRIAGVMKELDE  578 (683)
Q Consensus       557 L~~dP~p~~RPs~~eVl~~L~~  578 (683)
                      |..+  |..|||+.+++..|+.
T Consensus       236 l~~~--p~~Rp~~~~l~~~l~~  255 (256)
T cd05039         236 WELD--PAKRPTFKQLREQLAL  255 (256)
T ss_pred             hccC--hhhCcCHHHHHHHHhc
Confidence            9999  7799999999999875

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=5.2e-34  Score=298.26  Aligned_cols=212  Identities=20%  Similarity=0.293  Sum_probs=169.8

Q ss_pred             cccCCceEEEEEEE--CCeeEEEEEcCCCC-----CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCc
Q 005680          345 KCAGDWTNVYRGRL--NHASVAIKTLNNGL-----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNL  415 (683)
Q Consensus       345 iG~G~fG~Vykg~~--~g~~VAvK~l~~~~-----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL  415 (683)
                      +|.|+||+||+|..  +|+.||||.+....     ....+..|+.+++.++||||+++++++..  ..|+||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L   80 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDL   80 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCH
Confidence            47899999999987  68899999986221     22457789999999999999999998865  78999999999999


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-----
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-----  490 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-----  490 (683)
                      .+++....      .....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..     
T Consensus        81 ~~~~~~~~------~~~~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~  151 (280)
T cd05608          81 RYHIYNVD------EENPGFPEPRACFYTAQIISGLEHLHQ---RRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQ  151 (280)
T ss_pred             HHHHHhcc------ccCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEeeCccceecCCCC
Confidence            98885331      234579999999999999999999999   6799999999999999999999999998742     


Q ss_pred             --------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHH
Q 005680          491 --------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELA  550 (683)
Q Consensus       491 --------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~  550 (683)
                                          ..++.++|||||||++|+|++|+.||....... ........+.. ....++..++..+.
T Consensus       152 ~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~  229 (280)
T cd05608         152 SKTKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKV-ENKELKQRILN-DSVTYPDKFSPASK  229 (280)
T ss_pred             ccccccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcch-hHHHHHHhhcc-cCCCCcccCCHHHH
Confidence                                245679999999999999999999996422110 01111112222 22345567888999


Q ss_pred             HHHHHhhhcCCCccccccH
Q 005680          551 GIALKCLSADQDANRDLRI  569 (683)
Q Consensus       551 ~Li~~CL~~dP~p~~RPs~  569 (683)
                      +++.+||+.|  |..||++
T Consensus       230 ~li~~~l~~~--P~~R~~~  246 (280)
T cd05608         230 SFCEALLAKD--PEKRLGF  246 (280)
T ss_pred             HHHHHHhcCC--HHHhcCC
Confidence            9999999999  8899943

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=5.3e-34  Score=304.31  Aligned_cols=206  Identities=25%  Similarity=0.331  Sum_probs=170.0

Q ss_pred             ccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEEeecCCC
Q 005680          344 LKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       344 liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      .+|+|+||.||+|..  ++..||||+++..     .....+..|..++..+ +||||+++++++.+  ..+|||||+++|
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~g   81 (316)
T cd05619           2 MLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNGG   81 (316)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCCC
Confidence            578999999999998  5789999998732     2335567788888764 89999999999865  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..   
T Consensus        82 ~L~~~l~----------~~~~~~~~~~~~~~~qi~~al~~LH~---~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~  148 (316)
T cd05619          82 DLMFHIQ----------SCHKFDLPRATFYAAEIICGLQFLHS---KGIVYRDLKLDNILLDTDGHIKIADFGMCKENML  148 (316)
T ss_pred             cHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHh---CCeEeCCCCHHHEEECCCCCEEEccCCcceECCC
Confidence            9999983          44568999999999999999999999   6799999999999999999999999998742   


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE  548 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~  548 (683)
                                            ..++.++|||||||++|+|++|..||.....      ..+...+......+|..++..
T Consensus       149 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~------~~~~~~i~~~~~~~~~~~~~~  222 (316)
T cd05619         149 GDAKTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDE------EELFQSIRMDNPCYPRWLTRE  222 (316)
T ss_pred             CCCceeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCH------HHHHHHHHhCCCCCCccCCHH
Confidence                                  2467899999999999999999999964322      111122222233455567889


Q ss_pred             HHHHHHHhhhcCCCccccccHH
Q 005680          549 LAGIALKCLSADQDANRDLRIA  570 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs~~  570 (683)
                      +.+++.+||+.|  |..||++.
T Consensus       223 ~~~li~~~l~~~--P~~R~~~~  242 (316)
T cd05619         223 AKDILVKLFVRE--PERRLGVK  242 (316)
T ss_pred             HHHHHHHHhccC--HhhcCCCh
Confidence            999999999999  88999986

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=8.2e-34  Score=296.49  Aligned_cols=218  Identities=16%  Similarity=0.179  Sum_probs=170.3

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      .+.+|.|+||.||+|..  ++..||||++...    .....+.+|+.+++.++||||+++++++.+  ..++||||++++
T Consensus         6 ~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~   85 (287)
T cd07848           6 LGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFEYVEKN   85 (287)
T ss_pred             EEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEecCCCC
Confidence            45678999999999998  5789999998732    234578899999999999999999999865  789999999988


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|..+.          .....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..   
T Consensus        86 ~l~~~~----------~~~~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~  152 (287)
T cd07848          86 MLELLE----------EMPNGVPPEKVRSYIYQLIKAIHWCHK---NDIVHRDIKPENLLISHNDVLKLCDFGFARNLSE  152 (287)
T ss_pred             HHHHHH----------hcCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCcEEEeeccCcccccc
Confidence            776554          234568999999999999999999999   6799999999999999999999999998742   


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh----------HHHHHHHh-cC
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD----------QTTLMQVL-DG  536 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~----------~~~~~~il-d~  536 (683)
                                             ..++.++|||||||++|+|++|++||..........          ........ ++
T Consensus       153 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (287)
T cd07848         153 GSNANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPAEQMKLFYSNP  232 (287)
T ss_pred             cccccccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhCCCCHHHHHhhhccc
Confidence                                   246788999999999999999999996422110000          00000000 00


Q ss_pred             --CCC-------------CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          537 --NAG-------------IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       537 --~~~-------------~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                        ...             .+...++..+.+|+.+||+.|  |.+|||+.++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~--P~~R~s~~~~l~  283 (287)
T cd07848         233 RFHGLRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLN--PTDRYLTEQCLN  283 (287)
T ss_pred             hhcccccCcccCcccHHHhhhcccCHHHHHHHHHHccCC--cccCCCHHHHhc
Confidence              000             011235678999999999999  889999998875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=1.4e-33  Score=295.77  Aligned_cols=230  Identities=25%  Similarity=0.427  Sum_probs=184.3

Q ss_pred             cccccCCceEEEEEEE-------CCeeEEEEEcCCCC--CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          343 RLKCAGDWTNVYRGRL-------NHASVAIKTLNNGL--SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~-------~g~~VAvK~l~~~~--~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      +.+|.|+||.||++..       ++..||+|.+....  ....+.+|+.++.+++||||++++++|.+  ..++||||++
T Consensus        11 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   90 (288)
T cd05093          11 RELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMK   90 (288)
T ss_pred             cccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEcCC
Confidence            4568999999999985       24569999987332  24578999999999999999999999865  7899999999


Q ss_pred             CCCchhhhhhcccccc---cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCc
Q 005680          412 NGNLRDKLFTSQRNYK---NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN  488 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~---~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla  488 (683)
                      +++|.+++........   .......+++..+..++.||+.||.|||+   .+++||||||+|||++.++.+||+|||++
T Consensus        91 ~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~---~~i~H~dlkp~Nili~~~~~~kl~dfg~~  167 (288)
T cd05093          91 HGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLVGENLLVKIGDFGMS  167 (288)
T ss_pred             CCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecccCcceEEEccCCcEEeccCCcc
Confidence            9999999964321000   00123459999999999999999999999   67999999999999999999999999987


Q ss_pred             cc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCC
Q 005680          489 IC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGI  540 (683)
Q Consensus       489 ~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~  540 (683)
                      ..                           ..++.++|||||||++|+|+| |.+||.....     ......+.......
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~-----~~~~~~i~~~~~~~  242 (288)
T cd05093         168 RDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN-----NEVIECITQGRVLQ  242 (288)
T ss_pred             ccccCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH-----HHHHHHHHcCCcCC
Confidence            42                           235778999999999999998 8999864322     12223333333334


Q ss_pred             CChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          541 WPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       541 ~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      .+..++..+.+|+.+||+.|  |..|||+.+|+..|+.+...
T Consensus       243 ~~~~~~~~l~~li~~~l~~~--p~~Rpt~~~v~~~l~~~~~~  282 (288)
T cd05093         243 RPRTCPKEVYDLMLGCWQRE--PHMRLNIKEIHSLLQNLAKA  282 (288)
T ss_pred             CCCCCCHHHHHHHHHHccCC--hhhCCCHHHHHHHHHHHHHh
Confidence            45567789999999999999  88999999999999998754

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=7.5e-34  Score=302.47  Aligned_cols=223  Identities=21%  Similarity=0.269  Sum_probs=178.2

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC----------------CCHHHHHHHHHHHHhcCCCCccceec
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----------------LSEEDFQAKVSFLTAVRHPHLVAVMG  397 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----------------~~~~~~~~Ev~iL~~l~HpnIV~l~g  397 (683)
                      +.| +..+-+|+|.||.|-+|+.  +++.||||++...                ...+.+.+||.||++++|||||+|+.
T Consensus        97 Nqy-~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~LiE  175 (576)
T KOG0585|consen   97 NQY-ELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKLIE  175 (576)
T ss_pred             hhe-ehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEEEE
Confidence            444 3345568999999999998  7899999999711                11257899999999999999999999


Q ss_pred             cccc----ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccc
Q 005680          398 CCSE----LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSIL  473 (683)
Q Consensus       398 ~~~~----~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NIL  473 (683)
                      +..+    .+|||+|||..|.+...=          .....|+..+++.|+.+++.||.|||.   ++||||||||+|+|
T Consensus       176 vLDDP~s~~~YlVley~s~G~v~w~p----------~d~~els~~~Ar~ylrDvv~GLEYLH~---QgiiHRDIKPsNLL  242 (576)
T KOG0585|consen  176 VLDDPESDKLYLVLEYCSKGEVKWCP----------PDKPELSEQQARKYLRDVVLGLEYLHY---QGIIHRDIKPSNLL  242 (576)
T ss_pred             eecCcccCceEEEEEeccCCccccCC----------CCcccccHHHHHHHHHHHHHHHHHHHh---cCeeccccchhheE
Confidence            9865    789999999988876543          222339999999999999999999999   77999999999999


Q ss_pred             ccCCCcEEEecCCCccc----------------------------------cCCCcccccccHHHHHHHHhhCCCCchhh
Q 005680          474 LDRNLVAKISGLGLNIC----------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLV  519 (683)
Q Consensus       474 ld~~~~~KL~DFGla~~----------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~  519 (683)
                      |+++|++||+|||.+..                                  ...+.+.||||+||+||.|+.|+.||...
T Consensus       243 l~~~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~  322 (576)
T KOG0585|consen  243 LSSDGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDD  322 (576)
T ss_pred             EcCCCcEEeeccceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccc
Confidence            99999999999998742                                  12357889999999999999999999642


Q ss_pred             HHHhhhhHHHHHHHhcC-CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          520 EKAMALDQTTLMQVLDG-NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       520 ~~~~~~~~~~~~~ild~-~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                      .     ....+..++.. ...+..+++.+.+.+||.++|.+|  |..|.++.+|....-..
T Consensus       323 ~-----~~~l~~KIvn~pL~fP~~pe~~e~~kDli~~lL~Kd--P~~Ri~l~~ik~Hpwvt  376 (576)
T KOG0585|consen  323 F-----ELELFDKIVNDPLEFPENPEINEDLKDLIKRLLEKD--PEQRITLPDIKLHPWVT  376 (576)
T ss_pred             h-----HHHHHHHHhcCcccCCCcccccHHHHHHHHHHhhcC--hhheeehhhheecceec
Confidence            2     22334444443 222222357899999999999999  78999999887665433

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=6.8e-34  Score=303.32  Aligned_cols=207  Identities=22%  Similarity=0.294  Sum_probs=170.6

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEEeecCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      +++|+|+||.||+|..  +|..||||.++..     .....+..|..++..+ +||||+++++++.+  ..|+||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~   80 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence            3578999999999998  6789999998732     2335567788888765 89999999999865  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++.  
T Consensus        81 g~L~~~i~----------~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~  147 (316)
T cd05620          81 GDLMFHIQ----------DKGRFDLYRATFYAAEIVCGLQFLHS---KGIIYRDLKLDNVMLDRDGHIKIADFGMCKENV  147 (316)
T ss_pred             CcHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHeEECCCCCEEeCccCCCeecc
Confidence            99999983          44568999999999999999999999   6799999999999999999999999998742  


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHH
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAE  547 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~  547 (683)
                                             ..++.++|||||||++|+|++|+.||.....      ..+...+.......|..++.
T Consensus       148 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~~------~~~~~~~~~~~~~~~~~~~~  221 (316)
T cd05620         148 FGDNRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDE------DELFESIRVDTPHYPRWITK  221 (316)
T ss_pred             cCCCceeccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH------HHHHHHHHhCCCCCCCCCCH
Confidence                                   2467899999999999999999999964322      11122222233445566788


Q ss_pred             HHHHHHHHhhhcCCCccccccHH
Q 005680          548 ELAGIALKCLSADQDANRDLRIA  570 (683)
Q Consensus       548 ~l~~Li~~CL~~dP~p~~RPs~~  570 (683)
                      ++.+|+.+||+.|  |.+||++.
T Consensus       222 ~~~~li~~~l~~d--P~~R~~~~  242 (316)
T cd05620         222 ESKDILEKLFERD--PTRRLGVV  242 (316)
T ss_pred             HHHHHHHHHccCC--HHHcCCCh
Confidence            9999999999999  88999974

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=2.1e-33  Score=290.41  Aligned_cols=219  Identities=28%  Similarity=0.391  Sum_probs=180.7

Q ss_pred             cccccCCceEEEEEEE-CCeeEEEEEcCC-CCCHHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecCCCCchhhh
Q 005680          343 RLKCAGDWTNVYRGRL-NHASVAIKTLNN-GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMPNGNLRDKL  419 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~-~g~~VAvK~l~~-~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~ggsL~~~L  419 (683)
                      +.+|.|+||.||+|.+ ++..||+|.+.. ......+.+|+.+++.++||||+++++++.+ ..++||||+++|+|.+++
T Consensus        12 ~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~~   91 (262)
T cd05071          12 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFL   91 (262)
T ss_pred             eecCCCCCCcEEEEEecCCceEEEEecccCccCHHHHHHHHHHHHhCCCCCcceEEEEECCCCcEEEEEcCCCCcHHHHH
Confidence            4568899999999988 345799999974 3446789999999999999999999998765 789999999999999999


Q ss_pred             hhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---------
Q 005680          420 FTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---------  490 (683)
Q Consensus       420 ~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---------  490 (683)
                      ...        ....+++..+..++.|++.||.|||+   .+|+|+||||+||+++.++.+||+|||++..         
T Consensus        92 ~~~--------~~~~~~~~~~~~~~~~l~~aL~~lH~---~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~~~  160 (262)
T cd05071          92 KGE--------MGKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTAR  160 (262)
T ss_pred             hhc--------cccCCCHHHHHHHHHHHHHHHHHHHH---CCccccccCcccEEEcCCCcEEeccCCceeeccccccccc
Confidence            532        23468999999999999999999999   6799999999999999999999999998742         


Q ss_pred             -----------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHH
Q 005680          491 -----------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGI  552 (683)
Q Consensus       491 -----------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~L  552 (683)
                                       ..++.++|||||||++|+|+| |.+||.....     ......+........+..++..+.+|
T Consensus       161 ~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~l  235 (262)
T cd05071         161 QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN-----REVLDQVERGYRMPCPPECPESLHDL  235 (262)
T ss_pred             cCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCh-----HHHHHHHhcCCCCCCccccCHHHHHH
Confidence                             235678999999999999999 8888864321     12222233333333455678899999


Q ss_pred             HHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          553 ALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       553 i~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                      +.+||+.|  |..||++.++++.|+..
T Consensus       236 i~~~l~~~--p~~Rp~~~~~~~~l~~~  260 (262)
T cd05071         236 MCQCWRKE--PEERPTFEYLQAFLEDY  260 (262)
T ss_pred             HHHHccCC--cccCCCHHHHHHHHHHh
Confidence            99999999  88999999999998864

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=5.5e-34  Score=308.51  Aligned_cols=213  Identities=18%  Similarity=0.270  Sum_probs=170.6

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      .+.+|.|+||.||+|.+  +|+.||||++.....   ...+.+|+.+++.++|+|||++++++.+  ..++||||+++|+
T Consensus        79 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~  158 (353)
T PLN00034         79 VNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEFMDGGS  158 (353)
T ss_pred             hhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEecCCCCc
Confidence            35678999999999998  589999999863322   3568899999999999999999999866  7899999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+..              .+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..    
T Consensus       159 L~~~~--------------~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~  221 (353)
T PLN00034        159 LEGTH--------------IADEQFLADVARQILSGIAYLHR---RHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQT  221 (353)
T ss_pred             ccccc--------------cCCHHHHHHHHHHHHHHHHHHHH---CCEeecCCCHHHEEEcCCCCEEEcccccceecccc
Confidence            86543              24567788899999999999999   6799999999999999999999999998742    


Q ss_pred             ----------------c----------CCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChh
Q 005680          491 ----------------D----------QLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLD  544 (683)
Q Consensus       491 ----------------~----------~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~  544 (683)
                                      .          ..+.++|||||||++|+|++|+.||......  ........+........+..
T Consensus       222 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~--~~~~~~~~~~~~~~~~~~~~  299 (353)
T PLN00034        222 MDPCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQG--DWASLMCAICMSQPPEAPAT  299 (353)
T ss_pred             cccccccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCc--cHHHHHHHHhccCCCCCCCc
Confidence                            0          1134899999999999999999999732110  00111112222233444557


Q ss_pred             hHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          545 LAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ++..+.+||.+||..|  |..|||+.++++.
T Consensus       300 ~~~~l~~li~~~l~~~--P~~Rpt~~ell~h  328 (353)
T PLN00034        300 ASREFRHFISCCLQRE--PAKRWSAMQLLQH  328 (353)
T ss_pred             cCHHHHHHHHHHccCC--hhhCcCHHHHhcC
Confidence            7889999999999999  8899999998864

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-34  Score=309.03  Aligned_cols=218  Identities=22%  Similarity=0.268  Sum_probs=175.6

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC-CCHH--HHHHHHHHHHhcC-CCCccceeccccc---ceeEEEeecCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG-LSEE--DFQAKVSFLTAVR-HPHLVAVMGCCSE---LKCIVFEYMPNG  413 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-~~~~--~~~~Ev~iL~~l~-HpnIV~l~g~~~~---~~~LV~Ey~~gg  413 (683)
                      +-+|.|+||.||+|+.  +|..||||+++.. ...+  .-.+|+..|++|+ |||||++..++.+   .+|+|||||+ .
T Consensus        16 ~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~fVfE~Md-~   94 (538)
T KOG0661|consen   16 RKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYFVFEFMD-C   94 (538)
T ss_pred             HHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEeeeHHhhh-h
Confidence            3457999999999997  7899999999832 2233  3468999999998 9999999999966   6799999997 7


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|++++.         .+...+++..+..|+.||+.||+|+|.   .|++||||||+|||+..+..+||+|||+|+.   
T Consensus        95 NLYqLmK---------~R~r~fse~~irnim~QilqGL~hiHk---~GfFHRDlKPENiLi~~~~~iKiaDFGLARev~S  162 (538)
T KOG0661|consen   95 NLYQLMK---------DRNRLFSESDIRNIMYQILQGLAHIHK---HGFFHRDLKPENILISGNDVIKIADFGLAREVRS  162 (538)
T ss_pred             hHHHHHh---------hcCCcCCHHHHHHHHHHHHHHHHHHHh---cCcccccCChhheEecccceeEeccccccccccc
Confidence            9999995         346789999999999999999999999   5699999999999999999999999999975   


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh----------------HHHHHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD----------------QTTLMQ  532 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~----------------~~~~~~  532 (683)
                                            +.|+.+.||||+|||++|+.+-+|-|..........                ...+..
T Consensus       163 kpPYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~~~~eg~~La~  242 (538)
T KOG0661|consen  163 KPPYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKICEVLGTPDKDSWPEGYNLAS  242 (538)
T ss_pred             CCCcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhCCCccccchhHHHHHH
Confidence                                  568999999999999999999999886543321100                011111


Q ss_pred             HhcCCCCC--------CChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          533 VLDGNAGI--------WPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       533 ild~~~~~--------~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .+.-..+.        .-+.++.++.+||.+||..|  |..|||+.++++.
T Consensus       243 ~mnf~~P~~~~~~l~~L~p~~s~~~~~li~~ll~WD--P~kRpTA~~al~~  291 (538)
T KOG0661|consen  243 AMNFRFPQVKPSPLKDLLPNASSEAASLIERLLAWD--PDKRPTASQALQH  291 (538)
T ss_pred             HhccCCCcCCCCChHHhCcccCHHHHHHHHHHhcCC--CccCccHHHHhcC
Confidence            11111111        11247789999999999999  7799999999875

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=1.8e-33  Score=300.75  Aligned_cols=207  Identities=22%  Similarity=0.301  Sum_probs=170.3

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCC-Cccceeccccc--ceeEEEeecC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHP-HLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~Hp-nIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      .+.+|.|+||.||+|..  ++..||||++..     ......+..|+.++..+.|+ +|+.+++++.+  ..|+||||++
T Consensus         5 ~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~   84 (324)
T cd05587           5 LMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVN   84 (324)
T ss_pred             EEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEEcCCC
Confidence            45678999999999998  467899999872     22345678899999999765 57888888754  7899999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      +|+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++.. 
T Consensus        85 ~g~L~~~~~----------~~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~  151 (324)
T cd05587          85 GGDLMYHIQ----------QVGKFKEPHAVFYAAEIAIGLFFLHS---KGIIYRDLKLDNVMLDAEGHIKIADFGMCKEN  151 (324)
T ss_pred             CCcHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHeEEcCCCCEEEeecCcceec
Confidence            999999983          44568999999999999999999999   7799999999999999999999999998742 


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhH
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLA  546 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~  546 (683)
                                              ..++.++|||||||++|+|+||++||.....     ...+..+. .....+|..++
T Consensus       152 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~-----~~~~~~i~-~~~~~~~~~~~  225 (324)
T cd05587         152 IFGGKTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDE-----DELFQSIM-EHNVSYPKSLS  225 (324)
T ss_pred             CCCCCceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH-----HHHHHHHH-cCCCCCCCCCC
Confidence                                    2367889999999999999999999964322     11222222 23445666788


Q ss_pred             HHHHHHHHHhhhcCCCccccccH
Q 005680          547 EELAGIALKCLSADQDANRDLRI  569 (683)
Q Consensus       547 ~~l~~Li~~CL~~dP~p~~RPs~  569 (683)
                      ..+.+++.+||..|  |..|++.
T Consensus       226 ~~~~~li~~~l~~~--P~~R~~~  246 (324)
T cd05587         226 KEAVSICKGLLTKH--PAKRLGC  246 (324)
T ss_pred             HHHHHHHHHHhhcC--HHHcCCC
Confidence            99999999999999  8899986

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=1.5e-33  Score=287.98  Aligned_cols=215  Identities=24%  Similarity=0.415  Sum_probs=177.9

Q ss_pred             ccccCCceEEEEEEE-CCeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCchh
Q 005680          344 LKCAGDWTNVYRGRL-NHASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRD  417 (683)
Q Consensus       344 liG~G~fG~Vykg~~-~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~  417 (683)
                      ++|.|+||.||+|.. ++..||+|.+.....   ...+.+|+.+++.++||||++++++|.+  ..++||||+++|+|.+
T Consensus         2 ~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~   81 (250)
T cd05085           2 LLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFLS   81 (250)
T ss_pred             ccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcHHH
Confidence            578999999999987 678899999874432   2468899999999999999999999866  7899999999999999


Q ss_pred             hhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-------
Q 005680          418 KLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-------  490 (683)
Q Consensus       418 ~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-------  490 (683)
                      ++..         ....+++..+..++.+++.||.|||+   .+++||||||+||+++.++.+||+|||++..       
T Consensus        82 ~~~~---------~~~~~~~~~~~~~~~~i~~~l~~lH~---~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~  149 (250)
T cd05085          82 FLRK---------KKDELKTKQLVKFALDAAAGMAYLES---KNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYS  149 (250)
T ss_pred             HHHh---------cCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecccChheEEEcCCCeEEECCCccceeccccccc
Confidence            9842         23458999999999999999999999   6799999999999999999999999998742       


Q ss_pred             -------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHH
Q 005680          491 -------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELA  550 (683)
Q Consensus       491 -------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~  550 (683)
                                         ..++.++||||||+++|+|++ |..||......     .....+........+..++..+.
T Consensus       150 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  224 (250)
T cd05085         150 SSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTNQ-----QAREQVEKGYRMSCPQKCPDDVY  224 (250)
T ss_pred             cCCCCCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCHH-----HHHHHHHcCCCCCCCCCCCHHHH
Confidence                               235678999999999999998 99998643221     11122222333344556789999


Q ss_pred             HHHHHhhhcCCCccccccHHHHHHHHH
Q 005680          551 GIALKCLSADQDANRDLRIAGVMKELD  577 (683)
Q Consensus       551 ~Li~~CL~~dP~p~~RPs~~eVl~~L~  577 (683)
                      +++.+||+.+  |..||++.++++.|.
T Consensus       225 ~li~~~l~~~--p~~Rp~~~~l~~~l~  249 (250)
T cd05085         225 KVMQRCWDYK--PENRPKFSELQKELA  249 (250)
T ss_pred             HHHHHHcccC--cccCCCHHHHHHHhc
Confidence            9999999999  789999999998874

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=1.9e-33  Score=289.49  Aligned_cols=218  Identities=29%  Similarity=0.441  Sum_probs=181.5

Q ss_pred             cccccCCceEEEEEEE-CCeeEEEEEcCC-CCCHHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecCCCCchhhh
Q 005680          343 RLKCAGDWTNVYRGRL-NHASVAIKTLNN-GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMPNGNLRDKL  419 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~-~g~~VAvK~l~~-~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~ggsL~~~L  419 (683)
                      +.+|+|+||.||+|.. .+..||+|.+.. ......+.+|+.++++++||||+++++++.+ ..++||||+++++|.+++
T Consensus        12 ~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~~   91 (260)
T cd05070          12 KKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTMSPESFLEEAQIMKKLRHDKLVQLYAVVSEEPIYIVTEYMSKGSLLDFL   91 (260)
T ss_pred             heeccccCceEEEEEecCCceeEEEEecCCCCCHHHHHHHHHHHHhcCCCceEEEEeEECCCCcEEEEEecCCCcHHHHH
Confidence            5678999999999987 567899999873 3456789999999999999999999998866 789999999999999998


Q ss_pred             hhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---------
Q 005680          420 FTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---------  490 (683)
Q Consensus       420 ~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---------  490 (683)
                      ...        ....+++..+..++.+++.||.|||+   .+|+||||||+||+++.++.++|+|||++..         
T Consensus        92 ~~~--------~~~~~~~~~~~~~~~~l~~al~~lH~---~~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~  160 (260)
T cd05070          92 KDG--------EGRALKLPNLVDMAAQVAAGMAYIER---MNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTAR  160 (260)
T ss_pred             Hhc--------CCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCccceEEEeCCceEEeCCceeeeeccCcccccc
Confidence            532        23468999999999999999999999   6799999999999999999999999998742         


Q ss_pred             -----------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHH
Q 005680          491 -----------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGI  552 (683)
Q Consensus       491 -----------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~L  552 (683)
                                       ..++.++||||||+++|+|++ |.+||.....     ......+......+.+...+..+.+|
T Consensus       161 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l  235 (260)
T cd05070         161 QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNN-----REVLEQVERGYRMPCPQDCPISLHEL  235 (260)
T ss_pred             cCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCCH-----HHHHHHHHcCCCCCCCCcCCHHHHHH
Confidence                             234668999999999999999 8899864221     12222333333445566778899999


Q ss_pred             HHHhhhcCCCccccccHHHHHHHHHH
Q 005680          553 ALKCLSADQDANRDLRIAGVMKELDE  578 (683)
Q Consensus       553 i~~CL~~dP~p~~RPs~~eVl~~L~~  578 (683)
                      +.+||..+  |..|||+.++.+.|+.
T Consensus       236 i~~~l~~~--p~~Rpt~~~l~~~l~~  259 (260)
T cd05070         236 MLQCWKKD--PEERPTFEYLQSFLED  259 (260)
T ss_pred             HHHHcccC--cccCcCHHHHHHHHhc
Confidence            99999999  8899999999988864

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=1.7e-33  Score=289.82  Aligned_cols=218  Identities=27%  Similarity=0.421  Sum_probs=181.2

Q ss_pred             cccccCCceEEEEEEE-CCeeEEEEEcCC-CCCHHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecCCCCchhhh
Q 005680          343 RLKCAGDWTNVYRGRL-NHASVAIKTLNN-GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMPNGNLRDKL  419 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~-~g~~VAvK~l~~-~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~ggsL~~~L  419 (683)
                      +.+|.|+||.||+|.. ++..||+|.+.. ......+.+|+.++++++||||+++++++.+ ..++||||+++|+|.+++
T Consensus        12 ~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~~L~~~~   91 (260)
T cd05067          12 KKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSMSPEAFLAEANLMKQLQHPRLVRLYAVVTQEPIYIITEYMENGSLVDFL   91 (260)
T ss_pred             eeeccCccceEEeeecCCCceEEEEEecCCCCcHHHHHHHHHHHHhcCCcCeeeEEEEEccCCcEEEEEcCCCCCHHHHH
Confidence            5678999999999998 678999999873 4456789999999999999999999998855 789999999999999998


Q ss_pred             hhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---------
Q 005680          420 FTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---------  490 (683)
Q Consensus       420 ~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---------  490 (683)
                      ...        ....+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++..         
T Consensus        92 ~~~--------~~~~~~~~~~~~i~~~i~~al~~LH~---~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~  160 (260)
T cd05067          92 KTP--------EGIKLTINKLIDMAAQIAEGMAFIER---KNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAR  160 (260)
T ss_pred             Hhc--------CCCCCCHHHHHHHHHHHHHHHHHHhc---CCeecccccHHhEEEcCCCCEEEccCcceeecCCCCcccc
Confidence            532        33568999999999999999999999   6799999999999999999999999998742         


Q ss_pred             -----------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHH
Q 005680          491 -----------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGI  552 (683)
Q Consensus       491 -----------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~L  552 (683)
                                       ..++.++||||||+++|+|++ |++||.....     ......+........+...+.++.++
T Consensus       161 ~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l  235 (260)
T cd05067         161 EGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTN-----PEVIQNLERGYRMPRPDNCPEELYEL  235 (260)
T ss_pred             cCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCCh-----HHHHHHHHcCCCCCCCCCCCHHHHHH
Confidence                             234678999999999999999 9999964321     11122222223334455677899999


Q ss_pred             HHHhhhcCCCccccccHHHHHHHHHH
Q 005680          553 ALKCLSADQDANRDLRIAGVMKELDE  578 (683)
Q Consensus       553 i~~CL~~dP~p~~RPs~~eVl~~L~~  578 (683)
                      +.+||..+  |..|||+.+++..|+.
T Consensus       236 i~~~l~~~--p~~Rp~~~~l~~~l~~  259 (260)
T cd05067         236 MRLCWKEK--PEERPTFEYLRSVLED  259 (260)
T ss_pred             HHHHccCC--hhhCCCHHHHHHHhhc
Confidence            99999999  8899999999998864

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=1.8e-33  Score=291.98  Aligned_cols=227  Identities=24%  Similarity=0.411  Sum_probs=179.8

Q ss_pred             ccccCCceEEEEEEE--CC--eeEEEEEcCCCC---CHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEEeecCCC
Q 005680          344 LKCAGDWTNVYRGRL--NH--ASVAIKTLNNGL---SEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       344 liG~G~fG~Vykg~~--~g--~~VAvK~l~~~~---~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      ++|.|+||.||+|.+  ++  ..+|+|.+....   ....+.+|+.++.++ +||||++++++|..  ..++||||+++|
T Consensus         2 ~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~   81 (270)
T cd05047           2 VIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHG   81 (270)
T ss_pred             cCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCCC
Confidence            578999999999998  33  357999887322   235788999999999 79999999999866  689999999999


Q ss_pred             Cchhhhhhcccccc------cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCC
Q 005680          414 NLRDKLFTSQRNYK------NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL  487 (683)
Q Consensus       414 sL~~~L~~~~~~~~------~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGl  487 (683)
                      +|.+++........      .......+++..+..++.|++.||.|||+   .+++||||||+|||++.++.+||+|||+
T Consensus        82 ~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~---~~i~H~dikp~nili~~~~~~kl~dfgl  158 (270)
T cd05047          82 NLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGL  158 (270)
T ss_pred             cHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccccceEEEcCCCeEEECCCCC
Confidence            99999964321000      00122458999999999999999999999   6799999999999999999999999999


Q ss_pred             ccc------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCC
Q 005680          488 NIC------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWP  542 (683)
Q Consensus       488 a~~------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p  542 (683)
                      +..                        ..++.++|||||||++|+|++ |..||.....     ......+........+
T Consensus       159 ~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~-----~~~~~~~~~~~~~~~~  233 (270)
T cd05047         159 SRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC-----AELYEKLPQGYRLEKP  233 (270)
T ss_pred             ccccchhhhccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccCH-----HHHHHHHhCCCCCCCC
Confidence            742                        235678999999999999997 9999854221     1122223232333445


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      ..++..+.+|+.+||..+  |..|||+.+++..|..+.
T Consensus       234 ~~~~~~~~~li~~~l~~~--p~~Rps~~~il~~l~~~~  269 (270)
T cd05047         234 LNCDDEVYDLMRQCWREK--PYERPSFAQILVSLNRML  269 (270)
T ss_pred             CcCCHHHHHHHHHHcccC--hhhCCCHHHHHHHHHHhh
Confidence            567788999999999999  889999999999998764

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.1e-33  Score=296.70  Aligned_cols=218  Identities=20%  Similarity=0.285  Sum_probs=176.3

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      .+++|+|+||.||++..  +++.||||++...     .....+.+|+.+++.++||||+++++++.+  ..++||||+++
T Consensus         5 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~   84 (285)
T cd05605           5 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNG   84 (285)
T ss_pred             EEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEeccCC
Confidence            46778999999999997  5899999998632     122457789999999999999999999865  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++...        ....+++..+..++.|++.||.|||+   .+|+||||||+||++++++.++|+|||++..  
T Consensus        85 ~~L~~~~~~~--------~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~  153 (285)
T cd05605          85 GDLKFHIYNM--------GNPGFDEERAVFYAAEITCGLEDLHR---ERIVYRDLKPENILLDDYGHIRISDLGLAVEIP  153 (285)
T ss_pred             CcHHHHHHhc--------CcCCCCHHHHHHHHHHHHHHHHHHHH---CCcEecCCCHHHEEECCCCCEEEeeCCCceecC
Confidence            9999888532        23468999999999999999999999   6799999999999999999999999998753  


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE  548 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~  548 (683)
                                            ..++.++|||||||++|+|++|..||......  .....+...+......++..++..
T Consensus       154 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  231 (285)
T cd05605         154 EGETIRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEK--VKREEVERRVKEDQEEYSEKFSEA  231 (285)
T ss_pred             CCCccccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchh--hHHHHHHHHhhhcccccCcccCHH
Confidence                                  23567899999999999999999999753221  111122222333334456668889


Q ss_pred             HHHHHHHhhhcCCCccccc-----cHHHHHH
Q 005680          549 LAGIALKCLSADQDANRDL-----RIAGVMK  574 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RP-----s~~eVl~  574 (683)
                      +.+|+.+||..|  |..||     ++.+++.
T Consensus       232 ~~~li~~~l~~~--P~~R~~~~~~~~~~l~~  260 (285)
T cd05605         232 ARSICRQLLTKD--PGFRLGCRGEGAEEVKA  260 (285)
T ss_pred             HHHHHHHHccCC--HHHhcCCCCCCHHHHhc
Confidence            999999999999  88999     6666654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=1.1e-33  Score=294.33  Aligned_cols=233  Identities=21%  Similarity=0.329  Sum_probs=183.4

Q ss_pred             hhcCccccccccccCCceEEEEEEEC-------CeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--
Q 005680          334 ATEDFSERFRLKCAGDWTNVYRGRLN-------HASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--  401 (683)
Q Consensus       334 at~~F~~~~~liG~G~fG~Vykg~~~-------g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--  401 (683)
                      ++++|... ..+|+|+||.||+|.+.       +..||||++.....   ...+.+|+.+++.++||||+++++++.+  
T Consensus         4 ~~~~~~~~-~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~   82 (277)
T cd05062           4 AREKITMS-RELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQ   82 (277)
T ss_pred             cHHHceee-eeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCC
Confidence            34556554 45679999999999863       36799999863322   3468899999999999999999999865  


Q ss_pred             ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEE
Q 005680          402 LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAK  481 (683)
Q Consensus       402 ~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~K  481 (683)
                      ..++||||+++|+|.+++...............+++..+..++.|++.||.|||+   .+++|+||||+|||++.++.++
T Consensus        83 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~~vH~dlkp~Nil~~~~~~~~  159 (277)
T cd05062          83 PTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVK  159 (277)
T ss_pred             CeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCcchheEEEcCCCCEE
Confidence            7899999999999999996432110000113457889999999999999999999   6799999999999999999999


Q ss_pred             EecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHH
Q 005680          482 ISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQV  533 (683)
Q Consensus       482 L~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~i  533 (683)
                      |+|||+++.                           ..++.++|||||||++|+|++ |.+||.....     ......+
T Consensus       160 l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~~-----~~~~~~~  234 (277)
T cd05062         160 IGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSN-----EQVLRFV  234 (277)
T ss_pred             ECCCCCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCH-----HHHHHHH
Confidence            999998742                           235778999999999999999 7888864221     1222233


Q ss_pred             hcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHH
Q 005680          534 LDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELD  577 (683)
Q Consensus       534 ld~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~  577 (683)
                      ........+..++..+.+++.+||+.|  |..|||+.+++..|+
T Consensus       235 ~~~~~~~~~~~~~~~~~~li~~~l~~~--p~~Rps~~e~l~~l~  276 (277)
T cd05062         235 MEGGLLDKPDNCPDMLFELMRMCWQYN--PKMRPSFLEIISSIK  276 (277)
T ss_pred             HcCCcCCCCCCCCHHHHHHHHHHcCCC--hhhCcCHHHHHHHhh
Confidence            333444556677889999999999999  889999999998875

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=9.3e-34  Score=299.48  Aligned_cols=223  Identities=18%  Similarity=0.271  Sum_probs=170.6

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC---CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEe
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG---LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFE  408 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~---~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~E  408 (683)
                      ++|.. .+.+|.|+||.||+|..  +|..||||++...   .....+.+|+.+++.++||||+++++++.+  ..++|||
T Consensus         5 ~~y~~-~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e   83 (303)
T cd07869           5 DSYEK-LEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFE   83 (303)
T ss_pred             ccceE-eeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEE
Confidence            44544 35678999999999998  6889999998722   223467889999999999999999999865  7899999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCc
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN  488 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla  488 (683)
                      |++ ++|.+++..         ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++
T Consensus        84 ~~~-~~l~~~~~~---------~~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~~  150 (303)
T cd07869          84 YVH-TDLCQYMDK---------HPGGLHPENVKLFLFQLLRGLSYIHQ---RYILHRDLKPQNLLISDTGELKLADFGLA  150 (303)
T ss_pred             CCC-cCHHHHHHh---------CCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEECCCCcc
Confidence            996 688887742         33568899999999999999999999   67999999999999999999999999987


Q ss_pred             cc--------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCC--
Q 005680          489 IC--------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGI--  540 (683)
Q Consensus       489 ~~--------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~--  540 (683)
                      ..                          ..++.++|||||||++|+|++|.+||...................+....  
T Consensus       151 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (303)
T cd07869         151 RAKSVPSHTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWP  230 (303)
T ss_pred             eeccCCCccCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhCCCChhhcc
Confidence            42                          13567899999999999999999999653221000000000000000000  


Q ss_pred             ----------------CCh---------hhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          541 ----------------WPL---------DLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       541 ----------------~p~---------~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                                      .+.         ..+..+.+|+.+||+.|  |.+|||+.+++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~d--p~~R~s~~~~l~  287 (303)
T cd07869         231 GVHSLPHFKPERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCF--PKNRLSAQAALS  287 (303)
T ss_pred             chhhccccccccccccCCccHHHHhhccCCChHHHHHHHHHhccC--chhccCHHHHhc
Confidence                            000         13467889999999999  889999998875

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=1.1e-33  Score=303.45  Aligned_cols=226  Identities=20%  Similarity=0.243  Sum_probs=177.4

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEe
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFE  408 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~E  408 (683)
                      ++|.. .+.+|+|+||.||++..  +|..||+|.+.....   ...+.+|+.+|.+++||||+++++++.+  ..++|||
T Consensus         5 ~~y~~-~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   83 (331)
T cd06649           5 DDFER-ISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   83 (331)
T ss_pred             ccceE-EEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEee
Confidence            34443 35678999999999998  588999999874322   3578999999999999999999999865  7899999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCc
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN  488 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla  488 (683)
                      |+++|+|.+++.          ....+++..+..++.|++.||.|||+.  .+|+||||||+|||++.++.+||+|||++
T Consensus        84 ~~~~~~L~~~l~----------~~~~~~~~~~~~~~~~i~~~l~~lH~~--~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~  151 (331)
T cd06649          84 HMDGGSLDQVLK----------EAKRIPEEILGKVSIAVLRGLAYLREK--HQIMHRDVKPSNILVNSRGEIKLCDFGVS  151 (331)
T ss_pred             cCCCCcHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHhhc--CCEEcCCCChhhEEEcCCCcEEEccCccc
Confidence            999999999993          445689999999999999999999982  25999999999999999999999999987


Q ss_pred             cc-----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhh---hh----------------
Q 005680          489 IC-----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMA---LD----------------  526 (683)
Q Consensus       489 ~~-----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~---~~----------------  526 (683)
                      ..                       ..++.++|||||||++|+|+||+.||........   ..                
T Consensus       152 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (331)
T cd06649         152 GQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPDAKELEAIFGRPVVDGEEGEPHSISP  231 (331)
T ss_pred             ccccccccccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccccCCccccCc
Confidence            42                       2467899999999999999999999853211000   00                


Q ss_pred             ----------------------HHHHHHHhcCCCCCCC-hhhHHHHHHHHHHhhhcCCCccccccHHHHHHHH
Q 005680          527 ----------------------QTTLMQVLDGNAGIWP-LDLAEELAGIALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       527 ----------------------~~~~~~ild~~~~~~p-~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                                            ......+.....+..+ ..++.++.+|+.+||+.|  |++|||+.++++..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~~--P~~Rpt~~ell~h~  302 (331)
T cd06649         232 RPRPPGRPVSGHGMDSRPAMAIFELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLIKN--PAERADLKMLMNHT  302 (331)
T ss_pred             ccccccccccccccccccchhHHHHHHHHHhCCCcCCCCccccHHHHHHHHHHccCC--cccCCCHHHHhcCh
Confidence                                  0001111111111221 246788999999999999  88999999998764

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=1.6e-33  Score=295.80  Aligned_cols=229  Identities=26%  Similarity=0.417  Sum_probs=183.8

Q ss_pred             cccccCCceEEEEEEE-------CCeeEEEEEcCCCCC--HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          343 RLKCAGDWTNVYRGRL-------NHASVAIKTLNNGLS--EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~-------~g~~VAvK~l~~~~~--~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      ..+|+|+||.||+|..       ++..|++|.+.....  ...+.+|+.++++++||||+++++++.+  ..++||||++
T Consensus        11 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   90 (291)
T cd05094          11 RELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMK   90 (291)
T ss_pred             eeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceEEEEecCC
Confidence            4678899999999985       245699999874332  3578999999999999999999999966  7899999999


Q ss_pred             CCCchhhhhhcccccc------cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecC
Q 005680          412 NGNLRDKLFTSQRNYK------NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGL  485 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~------~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DF  485 (683)
                      +++|.+++........      .......+++..++.++.||+.||.|||+   .+|+||||||+|||++.++.++|+||
T Consensus        91 ~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~---~~i~H~dlkp~Nil~~~~~~~~l~df  167 (291)
T cd05094          91 HGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLAS---QHFVHRDLATRNCLVGANLLVKIGDF  167 (291)
T ss_pred             CCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecccCcceEEEccCCcEEECCC
Confidence            9999999964321000      00122458999999999999999999999   67999999999999999999999999


Q ss_pred             CCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCC
Q 005680          486 GLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGN  537 (683)
Q Consensus       486 Gla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~  537 (683)
                      |++..                           ..++.++|||||||++|+|+| |++||.....     ......+..+.
T Consensus       168 g~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~-----~~~~~~~~~~~  242 (291)
T cd05094         168 GMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSN-----TEVIECITQGR  242 (291)
T ss_pred             CcccccCCCceeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH-----HHHHHHHhCCC
Confidence            98742                           235678999999999999999 9999864322     11222333334


Q ss_pred             CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHH
Q 005680          538 AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRK  581 (683)
Q Consensus       538 ~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~  581 (683)
                      ....+..++..+.+++.+||+.+  |..|||+.+|++.|+.+..
T Consensus       243 ~~~~~~~~~~~~~~li~~~l~~~--P~~Rpt~~~v~~~l~~~~~  284 (291)
T cd05094         243 VLERPRVCPKEVYDIMLGCWQRE--PQQRLNIKEIYKILHALGK  284 (291)
T ss_pred             CCCCCccCCHHHHHHHHHHcccC--hhhCcCHHHHHHHHHHHHh
Confidence            44445567889999999999999  8899999999999999865

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=1.3e-33  Score=311.70  Aligned_cols=230  Identities=22%  Similarity=0.354  Sum_probs=182.2

Q ss_pred             ccccccCCceEEEEEEEC-------CeeEEEEEcCCCC---CHHHHHHHHHHHHhcC-CCCccceeccccc--ceeEEEe
Q 005680          342 FRLKCAGDWTNVYRGRLN-------HASVAIKTLNNGL---SEEDFQAKVSFLTAVR-HPHLVAVMGCCSE--LKCIVFE  408 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~-------g~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~-HpnIV~l~g~~~~--~~~LV~E  408 (683)
                      .+++|.|+||.||+|.+.       +..||||++....   ..+.+.+|+.+|.++. |||||+++|+|.+  ..|||||
T Consensus        42 ~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E  121 (400)
T cd05105          42 GRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITE  121 (400)
T ss_pred             hheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccCCceEEEEE
Confidence            356789999999999862       2469999997332   2357899999999996 9999999999976  7899999


Q ss_pred             ecCCCCchhhhhhcccccc-------------------------------------------------------------
Q 005680          409 YMPNGNLRDKLFTSQRNYK-------------------------------------------------------------  427 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~-------------------------------------------------------------  427 (683)
                      ||++|+|.++|........                                                             
T Consensus       122 y~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (400)
T cd05105         122 YCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLEIKEASKYS  201 (400)
T ss_pred             ecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchhhhhhhhhhhh
Confidence            9999999999865321000                                                             


Q ss_pred             -------------------------cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEE
Q 005680          428 -------------------------NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKI  482 (683)
Q Consensus       428 -------------------------~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL  482 (683)
                                               .......+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivH~dikp~Nill~~~~~~kL  278 (400)
T cd05105         202 DIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLAS---KNCVHRDLAARNVLLAQGKIVKI  278 (400)
T ss_pred             hcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChHhEEEeCCCEEEE
Confidence                                     00012358999999999999999999999   67999999999999999999999


Q ss_pred             ecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHh
Q 005680          483 SGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVL  534 (683)
Q Consensus       483 ~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~il  534 (683)
                      +|||+++.                           ..++.++|||||||++|+|++ |..||.....    .......+.
T Consensus       279 ~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~----~~~~~~~~~  354 (400)
T cd05105         279 CDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIV----DSTFYNKIK  354 (400)
T ss_pred             EeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccch----hHHHHHHHh
Confidence            99998742                           235789999999999999997 8888864211    111122233


Q ss_pred             cCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          535 DGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       535 d~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      .......+..++..+.+++.+||+.|  |..|||+.+|.+.|+.+.
T Consensus       355 ~~~~~~~~~~~~~~l~~li~~cl~~d--P~~RPt~~~l~~~l~~l~  398 (400)
T cd05105         355 SGYRMAKPDHATQEVYDIMVKCWNSE--PEKRPSFLHLSDIVESLL  398 (400)
T ss_pred             cCCCCCCCccCCHHHHHHHHHHCccC--HhHCcCHHHHHHHHHHHc
Confidence            33344456678889999999999999  789999999999998764

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=2.7e-33  Score=288.66  Aligned_cols=218  Identities=28%  Similarity=0.393  Sum_probs=179.8

Q ss_pred             cccccCCceEEEEEEEC-CeeEEEEEcCC-CCCHHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecCCCCchhhh
Q 005680          343 RLKCAGDWTNVYRGRLN-HASVAIKTLNN-GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMPNGNLRDKL  419 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~-g~~VAvK~l~~-~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~ggsL~~~L  419 (683)
                      ..+|.|+||.||+|.+. +..||+|.+.. ......+.+|+.++++++|||++++++++.+ ..++||||+++|+|.+++
T Consensus        12 ~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~~L~~~~   91 (260)
T cd05069          12 VKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTMMPEAFLQEAQIMKKLRHDKLVPLYAVVSEEPIYIVTEFMGKGSLLDFL   91 (260)
T ss_pred             eeecCcCCCeEEEEEEcCCceEEEEEcccCCccHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCcEEEEEcCCCCCHHHHH
Confidence            45689999999999984 45799999873 3345678999999999999999999998866 788999999999999999


Q ss_pred             hhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---------
Q 005680          420 FTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---------  490 (683)
Q Consensus       420 ~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---------  490 (683)
                      ...        ....+++..+..++.|++.||.|||+   .+|+|+||||+||++++++.++|+|||++..         
T Consensus        92 ~~~--------~~~~~~~~~~~~~~~~l~~al~~lH~---~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~~~~  160 (260)
T cd05069          92 KEG--------DGKYLKLPQLVDMAAQIADGMAYIER---MNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTAR  160 (260)
T ss_pred             hhC--------CCCCCCHHHHHHHHHHHHHHHHHHHh---CCEeecccCcceEEEcCCCeEEECCCccceEccCCccccc
Confidence            532        23458999999999999999999999   6799999999999999999999999998742         


Q ss_pred             -----------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHH
Q 005680          491 -----------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGI  552 (683)
Q Consensus       491 -----------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~L  552 (683)
                                       ..++.++|||||||++|+|+| |..||.....     ......+........+...+..+.++
T Consensus       161 ~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l  235 (260)
T cd05069         161 QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVN-----REVLEQVERGYRMPCPQGCPESLHEL  235 (260)
T ss_pred             CCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCH-----HHHHHHHHcCCCCCCCcccCHHHHHH
Confidence                             224668999999999999999 8999864321     12222333333344556778899999


Q ss_pred             HHHhhhcCCCccccccHHHHHHHHHH
Q 005680          553 ALKCLSADQDANRDLRIAGVMKELDE  578 (683)
Q Consensus       553 i~~CL~~dP~p~~RPs~~eVl~~L~~  578 (683)
                      +.+||..|  |..||++.+|++.|+.
T Consensus       236 i~~~l~~~--p~~Rp~~~~i~~~l~~  259 (260)
T cd05069         236 MKLCWKKD--PDERPTFEYIQSFLED  259 (260)
T ss_pred             HHHHccCC--cccCcCHHHHHHHHhc
Confidence            99999999  8899999999998864

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=7.4e-34  Score=303.79  Aligned_cols=218  Identities=18%  Similarity=0.226  Sum_probs=169.6

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc-------ceeEEEe
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-------LKCIVFE  408 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-------~~~LV~E  408 (683)
                      .+.+|.|+||.||+|..  +|..||||++...    .....+.+|+.+++.++||||+++++++..       ..|+|||
T Consensus         5 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~lv~e   84 (338)
T cd07859           5 QEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYVVFE   84 (338)
T ss_pred             EEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEEEEEe
Confidence            35678999999999997  6899999998622    223568899999999999999999998732       3799999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCc
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN  488 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla  488 (683)
                      |+. ++|.+++          .....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++
T Consensus        85 ~~~-~~L~~~l----------~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIll~~~~~~kL~Dfg~~  150 (338)
T cd07859          85 LME-SDLHQVI----------KANDDLTPEHHQFFLYQLLRALKYIHT---ANVFHRDLKPKNILANADCKLKICDFGLA  150 (338)
T ss_pred             cCC-CCHHHHH----------HhcccCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCcEEEccCccc
Confidence            995 7899988          344569999999999999999999999   67999999999999999999999999987


Q ss_pred             cc------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhh----------h--
Q 005680          489 IC------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMAL----------D--  526 (683)
Q Consensus       489 ~~------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~----------~--  526 (683)
                      +.                              ..++.++|||||||++|+|+||++||.........          .  
T Consensus       151 ~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~  230 (338)
T cd07859         151 RVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPE  230 (338)
T ss_pred             cccccccCccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCCHH
Confidence            42                              23567899999999999999999998532110000          0  


Q ss_pred             ------HHHHHHHhc----CCCCCC---ChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          527 ------QTTLMQVLD----GNAGIW---PLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       527 ------~~~~~~ild----~~~~~~---p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                            .......+.    .....+   .+.+++.+.+++.+||..|  |..|||+.+++..
T Consensus       231 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--P~~Rpt~~e~l~h  290 (338)
T cd07859         231 TISRVRNEKARRYLSSMRKKQPVPFSQKFPNADPLALRLLERLLAFD--PKDRPTAEEALAD  290 (338)
T ss_pred             HHHHhhhhhHHHHHHhhcccCCCchHHhcCCCChHHHHHHHHHcCcC--cccCCCHHHHhcC
Confidence                  000001111    111111   1135677899999999999  8899999998864

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=1.5e-33  Score=291.72  Aligned_cols=217  Identities=23%  Similarity=0.295  Sum_probs=170.6

Q ss_pred             ccccCCceEEEEEEE-C---CeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          344 LKCAGDWTNVYRGRL-N---HASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       344 liG~G~fG~Vykg~~-~---g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      .+|+|+||.||+|.. +   ...||+|.+.....   ...+.+|+.+++.++||||++++++|.+  ..++||||+++|+
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g~   81 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLGD   81 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCCc
Confidence            368999999999976 2   35789998763322   3467899999999999999999999866  7899999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++.....     .....+++.....++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..    
T Consensus        82 L~~~l~~~~~-----~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~  153 (269)
T cd05042          82 LKNYLRSNRG-----MVAQMAQKDVLQRMACEVASGLLWLHQ---ADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPE  153 (269)
T ss_pred             HHHHHHhccc-----cccccccHHHHHHHHHHHHHHHHHHHh---cCEecccccHhheEecCCCcEEEeccccccccccc
Confidence            9999965421     122345788889999999999999999   6799999999999999999999999998742    


Q ss_pred             ------------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcC---
Q 005680          491 ------------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDG---  536 (683)
Q Consensus       491 ------------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~---  536 (683)
                                                    ..++.++|||||||++|+|++ |.+||......     ..+...+..   
T Consensus       154 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~-----~~~~~~~~~~~~  228 (269)
T cd05042         154 DYYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSDE-----QVLKQVVREQDI  228 (269)
T ss_pred             hheeccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCCHH-----HHHHHHhhccCc
Confidence                                          023568999999999999999 78888643221     112222221   


Q ss_pred             --CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHH
Q 005680          537 --NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       537 --~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                        ..+..+..++..+..++..|| .|  |..|||+.+|++.|
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~-~d--p~~Rpt~~~v~~~l  267 (269)
T cd05042         229 KLPKPQLDLKYSDRWYEVMQFCW-LD--PETRPTAEEVHELL  267 (269)
T ss_pred             cCCCCcccccCCHHHHHHHHHHh-cC--cccccCHHHHHHHh
Confidence              122334467788899999999 47  77999999999876

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=1.7e-33  Score=290.84  Aligned_cols=225  Identities=24%  Similarity=0.429  Sum_probs=183.3

Q ss_pred             hcCccccccccccCCceEEEEEEE--CC---eeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceeccccc--cee
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL--NH---ASVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKC  404 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~--~g---~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~  404 (683)
                      +++|.. .+++|+|+||.||+|..  ++   ..||||.+....   ....+..|+.++.+++||||+++++++.+  ..+
T Consensus         4 ~~~~~~-~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   82 (268)
T cd05063           4 PSHITK-QKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAM   82 (268)
T ss_pred             hHHceE-eeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcE
Confidence            345554 36678999999999997  33   379999987432   23568899999999999999999999866  789


Q ss_pred             EEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEec
Q 005680          405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISG  484 (683)
Q Consensus       405 LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~D  484 (683)
                      +||||+++++|.+++..         ....+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.+||+|
T Consensus        83 lv~e~~~~~~L~~~~~~---------~~~~~~~~~~~~~~~~l~~al~~lH~---~~i~H~dlkp~Nili~~~~~~kl~d  150 (268)
T cd05063          83 IITEYMENGALDKYLRD---------HDGEFSSYQLVGMLRGIAAGMKYLSD---MNYVHRDLAARNILVNSNLECKVSD  150 (268)
T ss_pred             EEEEcCCCCCHHHHHHh---------cCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccchhhEEEcCCCcEEECC
Confidence            99999999999999842         23568999999999999999999999   6799999999999999999999999


Q ss_pred             CCCccc----------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhc
Q 005680          485 LGLNIC----------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLD  535 (683)
Q Consensus       485 FGla~~----------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild  535 (683)
                      ||++..                            ..++.++|||||||++|+|++ |+.||.....     ......+..
T Consensus       151 fg~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~-----~~~~~~i~~  225 (268)
T cd05063         151 FGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSN-----HEVMKAIND  225 (268)
T ss_pred             CccceecccccccceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCH-----HHHHHHHhc
Confidence            998742                            234678999999999999998 9999854221     122223333


Q ss_pred             CCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          536 GNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       536 ~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                      ....+.+..++..+.+++.+||..+  |..||++.+|+..|+++
T Consensus       226 ~~~~~~~~~~~~~~~~li~~c~~~~--p~~Rp~~~~i~~~l~~~  267 (268)
T cd05063         226 GFRLPAPMDCPSAVYQLMLQCWQQD--RARRPRFVDIVNLLDKL  267 (268)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHcCCC--cccCcCHHHHHHHHHhh
Confidence            3334445567889999999999999  88999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=1.8e-33  Score=289.46  Aligned_cols=218  Identities=23%  Similarity=0.413  Sum_probs=175.5

Q ss_pred             ccccCCceEEEEEEE-----CCeeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceeccccc---ceeEEEeecCC
Q 005680          344 LKCAGDWTNVYRGRL-----NHASVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE---LKCIVFEYMPN  412 (683)
Q Consensus       344 liG~G~fG~Vykg~~-----~g~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~---~~~LV~Ey~~g  412 (683)
                      ++|+|+||.||+|.+     .+..||||.+....   ....+.+|+.+++.++||||++++++|..   ..++||||+++
T Consensus         2 ~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~   81 (262)
T cd05058           2 VIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMKH   81 (262)
T ss_pred             cccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCCC
Confidence            578999999999986     23579999986322   23578899999999999999999997743   57899999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++..         ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++.  
T Consensus        82 ~~L~~~~~~---------~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~  149 (262)
T cd05058          82 GDLRNFIRS---------ETHNPTVKDLIGFGLQVAKGMEYLAS---KKFVHRDLAARNCMLDESFTVKVADFGLARDIY  149 (262)
T ss_pred             CCHHHHHHh---------cCCCCCHHHHHHHHHHHHHHHHHHHh---CCccccccCcceEEEcCCCcEEECCcccccccc
Confidence            999999942         23446788889999999999999999   6799999999999999999999999998741  


Q ss_pred             ---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCC
Q 005680          491 ---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWP  542 (683)
Q Consensus       491 ---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p  542 (683)
                                                 ..++.++|||||||++|+|++ |.+||.....     ......+........+
T Consensus       150 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  224 (262)
T cd05058         150 DKEYYSVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVDS-----FDITVYLLQGRRLLQP  224 (262)
T ss_pred             CCcceeecccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCCCH-----HHHHHHHhcCCCCCCC
Confidence                                       234678999999999999999 4666653221     1122233333334445


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      ..++..+.+++.+||..+  |..||++.+|+..|+.+.
T Consensus       225 ~~~~~~~~~li~~cl~~~--p~~Rp~~~~il~~l~~~~  260 (262)
T cd05058         225 EYCPDPLYEVMLSCWHPK--PEMRPTFSELVSRIEQIF  260 (262)
T ss_pred             CcCCHHHHHHHHHHcCCC--hhhCCCHHHHHHHHHHHh
Confidence            556789999999999999  779999999999999875

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=8.5e-34  Score=303.88  Aligned_cols=216  Identities=20%  Similarity=0.259  Sum_probs=173.5

Q ss_pred             ccccccCCceEEEEEEE-----CCeeEEEEEcCC------CCCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEE
Q 005680          342 FRLKCAGDWTNVYRGRL-----NHASVAIKTLNN------GLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVF  407 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~-----~g~~VAvK~l~~------~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~  407 (683)
                      .+.+|+|+||.||++..     +|..||+|++..      ......+..|+.++..+ +||||+++++++.+  ..++||
T Consensus         5 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~   84 (332)
T cd05614           5 LKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKLHLIL   84 (332)
T ss_pred             EEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEEEEEE
Confidence            45678999999999876     478999999862      12235678899999999 59999999998865  688999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCC
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL  487 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGl  487 (683)
                      ||+++|+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+
T Consensus        85 e~~~~g~L~~~l~----------~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivHrDlkp~Nili~~~~~~kl~DfG~  151 (332)
T cd05614          85 DYVSGGEMFTHLY----------QRDNFSEDEVRFYSGEIILALEHLHK---LGIVYRDIKLENILLDSEGHVVLTDFGL  151 (332)
T ss_pred             eCCCCCcHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCcEecCCCHHHeEECCCCCEEEeeCcC
Confidence            9999999999993          44568999999999999999999999   6799999999999999999999999998


Q ss_pred             ccc---------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCC
Q 005680          488 NIC---------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGI  540 (683)
Q Consensus       488 a~~---------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~  540 (683)
                      ++.                           ..++.++|||||||++|+|+||+.||......  .....+...+......
T Consensus       152 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~--~~~~~~~~~~~~~~~~  229 (332)
T cd05614         152 SKEFLSEEKERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGER--NTQSEVSRRILKCDPP  229 (332)
T ss_pred             CccccccCCCccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCCC--CCHHHHHHHHhcCCCC
Confidence            742                           12567899999999999999999999642211  1111122222223345


Q ss_pred             CChhhHHHHHHHHHHhhhcCCCccccc-----cHHHHHH
Q 005680          541 WPLDLAEELAGIALKCLSADQDANRDL-----RIAGVMK  574 (683)
Q Consensus       541 ~p~~~~~~l~~Li~~CL~~dP~p~~RP-----s~~eVl~  574 (683)
                      +|..++..+.+++.+||+.|  |..||     ++.++++
T Consensus       230 ~~~~~~~~~~~li~~~l~~d--p~~R~~~~~~~~~~~l~  266 (332)
T cd05614         230 FPSFIGPEAQDLLHKLLRKD--PKKRLGAGPQGASEIKE  266 (332)
T ss_pred             CCCCCCHHHHHHHHHHcCCC--HHHcCCCCCCCHHHHHc
Confidence            56678899999999999999  88999     5556554

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=2e-33  Score=291.94  Aligned_cols=225  Identities=26%  Similarity=0.422  Sum_probs=181.8

Q ss_pred             cccccCCceEEEEEEEC-------CeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeec
Q 005680          343 RLKCAGDWTNVYRGRLN-------HASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYM  410 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~-------g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~  410 (683)
                      +.+|+|+||.||+|...       +..||||.+.....   ...+.+|+.++..++||||+++++++.+  ..++||||+
T Consensus        11 ~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   90 (280)
T cd05049          11 RELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPPIMVFEYM   90 (280)
T ss_pred             hhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCeEEEEecC
Confidence            56789999999999862       36899999974332   3679999999999999999999999866  789999999


Q ss_pred             CCCCchhhhhhcccccc----cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          411 PNGNLRDKLFTSQRNYK----NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~----~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      ++|+|.+++........    .......+++..+..++.||+.||.|||+   .+++||||||+|||++.++.+||+|||
T Consensus        91 ~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~---~~i~h~dlkp~nili~~~~~~kl~d~g  167 (280)
T cd05049          91 EHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLAS---QHFVHRDLATRNCLVGYDLVVKIGDFG  167 (280)
T ss_pred             CCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhh---CCeeccccccceEEEcCCCeEEECCcc
Confidence            99999999964421000    00234568999999999999999999999   679999999999999999999999999


Q ss_pred             Cccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCC
Q 005680          487 LNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNA  538 (683)
Q Consensus       487 la~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~  538 (683)
                      ++..                           ..++.++|||||||++|+|++ |..||.....     ......+..+..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~-----~~~~~~~~~~~~  242 (280)
T cd05049         168 MSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSN-----EEVIECITQGRL  242 (280)
T ss_pred             cceecccCcceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCH-----HHHHHHHHcCCc
Confidence            8742                           245778999999999999998 9999854222     122223333334


Q ss_pred             CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHH
Q 005680          539 GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELD  577 (683)
Q Consensus       539 ~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~  577 (683)
                      ...+..++..+.+++.+||..|  |..||++.+|++.|+
T Consensus       243 ~~~~~~~~~~~~~li~~~l~~~--p~~Rp~~~eil~~l~  279 (280)
T cd05049         243 LQRPRTCPSEVYDIMLGCWKRD--PQQRINIKDIHERLQ  279 (280)
T ss_pred             CCCCCCCCHHHHHHHHHHcCCC--cccCCCHHHHHHHhh
Confidence            4445567889999999999999  789999999998875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=2.6e-33  Score=285.99  Aligned_cols=223  Identities=28%  Similarity=0.462  Sum_probs=183.4

Q ss_pred             ccccCCceEEEEEEEC-----CeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          344 LKCAGDWTNVYRGRLN-----HASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       344 liG~G~fG~Vykg~~~-----g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      ++|.|+||.||+|...     +..||+|.+.....   ...+.+|+.++..++|+||+++++++.+  ..++||||++++
T Consensus         2 ~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~   81 (262)
T cd00192           2 KLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEGG   81 (262)
T ss_pred             ccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccCC
Confidence            5789999999999984     78999999984332   4688999999999999999999999866  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++....... .......+++..+..++.|++.||.|||+   .+|+|+||+|+||+++.++.+||+|||.+..   
T Consensus        82 ~L~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~al~~lH~---~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~  157 (262)
T cd00192          82 DLLDYLRKSRPVF-PSPEKSTLSLKDLLSFAIQIAKGMEYLAS---KKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYD  157 (262)
T ss_pred             cHHHHHhhccccc-cccccccCCHHHHHHHHHHHHHHHHHHHc---CCcccCccCcceEEECCCCcEEEccccccccccc
Confidence            9999995331000 00013779999999999999999999999   7799999999999999999999999998743   


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhh
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDL  545 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~  545 (683)
                                              ..++.++|||||||++|+|++ |.+||.....     ......+........|..+
T Consensus       158 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~  232 (262)
T cd00192         158 DDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSN-----EEVLEYLRKGYRLPKPEYC  232 (262)
T ss_pred             ccccccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCCH-----HHHHHHHHcCCCCCCCccC
Confidence                                    245678999999999999999 6999875422     2223334444455566778


Q ss_pred             HHHHHHHHHHhhhcCCCccccccHHHHHHHHH
Q 005680          546 AEELAGIALKCLSADQDANRDLRIAGVMKELD  577 (683)
Q Consensus       546 ~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~  577 (683)
                      +..+.+++.+||..+  |..|||+.+++..|+
T Consensus       233 ~~~~~~li~~~l~~~--p~~Rps~~~l~~~l~  262 (262)
T cd00192         233 PDELYELMLSCWQLD--PEDRPTFSELVERLE  262 (262)
T ss_pred             ChHHHHHHHHHccCC--cccCcCHHHHHHhhC
Confidence            899999999999999  789999999998763

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=2e-33  Score=296.13  Aligned_cols=232  Identities=22%  Similarity=0.375  Sum_probs=184.0

Q ss_pred             cccccCCceEEEEEEE--CC--eeEEEEEcCCCC---CHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEEeecCC
Q 005680          343 RLKCAGDWTNVYRGRL--NH--ASVAIKTLNNGL---SEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g--~~VAvK~l~~~~---~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      .++|.|+||.||+|.+  ++  ..+++|.++...   ....+.+|+.++.++ +||||+++++++.+  ..++||||+++
T Consensus         8 ~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~   87 (297)
T cd05089           8 DVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIAIEYAPY   87 (297)
T ss_pred             eeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEEEEecCC
Confidence            4678999999999987  33  347898887322   235688999999999 79999999999866  68999999999


Q ss_pred             CCchhhhhhcccccc------cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          413 GNLRDKLFTSQRNYK------NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       413 gsL~~~L~~~~~~~~------~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      |+|.+++........      .......+++..++.|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||
T Consensus        88 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~---~~ivH~dlkp~Nill~~~~~~kl~dfg  164 (297)
T cd05089          88 GNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSE---KQFIHRDLAARNVLVGENLASKIADFG  164 (297)
T ss_pred             CcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCcCCcceEEECCCCeEEECCcC
Confidence            999999964321000      00122468999999999999999999999   679999999999999999999999999


Q ss_pred             Cccc------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCC
Q 005680          487 LNIC------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIW  541 (683)
Q Consensus       487 la~~------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~  541 (683)
                      ++..                        ..++.++|||||||++|+|+| |.+||.....     ......+........
T Consensus       165 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~-----~~~~~~~~~~~~~~~  239 (297)
T cd05089         165 LSRGEEVYVKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTC-----AELYEKLPQGYRMEK  239 (297)
T ss_pred             CCccccceeccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCH-----HHHHHHHhcCCCCCC
Confidence            8732                        235789999999999999998 9999854221     112223333333445


Q ss_pred             ChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhcc
Q 005680          542 PLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKAD  584 (683)
Q Consensus       542 p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~~  584 (683)
                      |..++..+.+|+.+||..+  |..||++.+++..|..+.....
T Consensus       240 ~~~~~~~~~~li~~~l~~~--p~~Rp~~~~i~~~l~~~~~~~~  280 (297)
T cd05089         240 PRNCDDEVYELMRQCWRDR--PYERPPFAQISVQLSRMLEARK  280 (297)
T ss_pred             CCCCCHHHHHHHHHHcCCC--hhhCcCHHHHHHHHHHHHHhhc
Confidence            5667889999999999999  8899999999999998876543

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=1.1e-33  Score=319.18  Aligned_cols=219  Identities=16%  Similarity=0.189  Sum_probs=180.3

Q ss_pred             ccccccccCCceEEEEEEE--C-CeeEEEEEcCCCC--CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          340 ERFRLKCAGDWTNVYRGRL--N-HASVAIKTLNNGL--SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~--~-g~~VAvK~l~~~~--~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      ...+++|+|+||.||+|..  + +..||+|.+....  ....+.+|+.+|+.++|||||+++++|.+  ..||||||++|
T Consensus        70 ~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~~~g  149 (478)
T PTZ00267         70 VLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYGSG  149 (478)
T ss_pred             EEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEECCCC
Confidence            3456778999999999987  3 6789999875222  23467889999999999999999999865  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.++|....      ....++++..+..++.||+.||.|||+   .+|+||||||+||||+.++.+||+|||+++.  
T Consensus       150 g~L~~~l~~~~------~~~~~l~~~~~~~i~~qi~~aL~~lH~---~~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~  220 (478)
T PTZ00267        150 GDLNKQIKQRL------KEHLPFQEYEVGLLFYQIVLALDEVHS---RKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYS  220 (478)
T ss_pred             CCHHHHHHHHH------hccCCCCHHHHHHHHHHHHHHHHHHHh---CCEEECCcCHHhEEECCCCcEEEEeCcCceecC
Confidence            99999885431      234578999999999999999999999   7799999999999999999999999998742  


Q ss_pred             -------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhh
Q 005680          491 -------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDL  545 (683)
Q Consensus       491 -------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~  545 (683)
                                               ..++.++|||||||++|+|++|++||.....     ...+..++.+.....|..+
T Consensus       221 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~-----~~~~~~~~~~~~~~~~~~~  295 (478)
T PTZ00267        221 DSVSLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPSQ-----REIMQQVLYGKYDPFPCPV  295 (478)
T ss_pred             CccccccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHHHhCCCCCCCccC
Confidence                                     2367789999999999999999999864221     2233344444444556678


Q ss_pred             HHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          546 AEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       546 ~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +..+.+|+.+||..|  |..||++.+++.
T Consensus       296 s~~~~~li~~~L~~d--P~~Rps~~~~l~  322 (478)
T PTZ00267        296 SSGMKALLDPLLSKN--PALRPTTQQLLH  322 (478)
T ss_pred             CHHHHHHHHHHhccC--hhhCcCHHHHHh
Confidence            889999999999999  889999999875

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=3e-33  Score=287.82  Aligned_cols=229  Identities=20%  Similarity=0.305  Sum_probs=183.5

Q ss_pred             CccccccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEE
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVF  407 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~  407 (683)
                      +|.. .+.+|.|+||.||+|..  +|..||+|.++.     ......+.+|+.++++++|+||+++++++.+  ..++||
T Consensus         3 ~y~~-~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~   81 (267)
T cd08224           3 NFKI-EKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVL   81 (267)
T ss_pred             ceee-eeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence            4443 35678999999999998  689999998862     1224678999999999999999999999865  789999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCC
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL  487 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGl  487 (683)
                      ||+++|+|.+++....      .....+++..+..++.+++.||.|||+   .+|+||||+|+||+++.++.++|+|||+
T Consensus        82 e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~dl~p~nil~~~~~~~~l~d~~~  152 (267)
T cd08224          82 ELADAGDLSRMIKHFK------KQKRLIPERTIWKYFVQLCSALEHMHS---KRIMHRDIKPANVFITATGVVKLGDLGL  152 (267)
T ss_pred             ecCCCCCHHHHHHHhc------ccCCCcCHHHHHHHHHHHHHHHHHHHh---CCEecCCcChhhEEECCCCcEEEeccce
Confidence            9999999999985431      234568999999999999999999999   6799999999999999999999999998


Q ss_pred             ccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCC
Q 005680          488 NIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWP  542 (683)
Q Consensus       488 a~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p  542 (683)
                      +..                         ..++.++|||||||++|+|++|+.||.....   ........+........|
T Consensus       153 ~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~---~~~~~~~~~~~~~~~~~~  229 (267)
T cd08224         153 GRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKM---NLYSLCKKIEKCDYPPLP  229 (267)
T ss_pred             eeeccCCCcccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCCc---cHHHHHhhhhcCCCCCCC
Confidence            642                         2356789999999999999999999853211   001111122222233333


Q ss_pred             h-hhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          543 L-DLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       543 ~-~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      . ..+..+.+++.+||..+  |..|||+.+|++.|+.+.
T Consensus       230 ~~~~~~~~~~~i~~cl~~~--p~~Rp~~~~il~~~~~~~  266 (267)
T cd08224         230 ADHYSEELRDLVSRCINPD--PEKRPDISYVLQVAKEMH  266 (267)
T ss_pred             hhhcCHHHHHHHHHHcCCC--cccCCCHHHHHHHHHHhc
Confidence            3 56788999999999999  889999999999998874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1e-33  Score=313.56  Aligned_cols=214  Identities=24%  Similarity=0.351  Sum_probs=181.6

Q ss_pred             HhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhc-CCCCccceeccccc--c
Q 005680          333 LATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--L  402 (683)
Q Consensus       333 ~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~  402 (683)
                      ...++|.- .+++|+|+||+|+++.+  ++..+|||++++     ....+....|..|+... +||.++.++.+|+.  +
T Consensus       365 ~~l~~F~~-l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~  443 (694)
T KOG0694|consen  365 LTLDDFRL-LAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEH  443 (694)
T ss_pred             ccccceEE-EEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCe
Confidence            44456643 47889999999999999  678999999983     34457788999998888 59999999999976  8


Q ss_pred             eeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEE
Q 005680          403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKI  482 (683)
Q Consensus       403 ~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL  482 (683)
                      +|.||||+.||++..+.           ....+++..+..|++.|+.||.|||.   .+||+||||.+|||||.+|++||
T Consensus       444 l~fvmey~~Ggdm~~~~-----------~~~~F~e~rarfyaAev~l~L~fLH~---~~IIYRDlKLdNiLLD~eGh~ki  509 (694)
T KOG0694|consen  444 LFFVMEYVAGGDLMHHI-----------HTDVFSEPRARFYAAEVVLGLQFLHE---NGIIYRDLKLDNLLLDTEGHVKI  509 (694)
T ss_pred             EEEEEEecCCCcEEEEE-----------ecccccHHHHHHHHHHHHHHHHHHHh---cCceeeecchhheEEcccCcEEe
Confidence            99999999999965554           45679999999999999999999999   66999999999999999999999


Q ss_pred             ecCCCccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCC
Q 005680          483 SGLGLNIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGN  537 (683)
Q Consensus       483 ~DFGla~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~  537 (683)
                      +|||+++.                         ..|+.++|+|||||+|||||+|.+||...+.     ...+..++ ..
T Consensus       510 ADFGlcKe~m~~g~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddE-----ee~FdsI~-~d  583 (694)
T KOG0694|consen  510 ADFGLCKEGMGQGDRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDE-----EEVFDSIV-ND  583 (694)
T ss_pred             cccccccccCCCCCccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCCH-----HHHHHHHh-cC
Confidence            99999965                         4689999999999999999999999975322     23333333 34


Q ss_pred             CCCCChhhHHHHHHHHHHhhhcCCCccccccH
Q 005680          538 AGIWPLDLAEELAGIALKCLSADQDANRDLRI  569 (683)
Q Consensus       538 ~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~  569 (683)
                      ...+|..++.+..+|+.++|.++  |.+|..+
T Consensus       584 ~~~yP~~ls~ea~~il~~ll~k~--p~kRLG~  613 (694)
T KOG0694|consen  584 EVRYPRFLSKEAIAIMRRLLRKN--PEKRLGS  613 (694)
T ss_pred             CCCCCCcccHHHHHHHHHHhccC--cccccCC
Confidence            55678889999999999999999  7799876

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=6.2e-34  Score=304.45  Aligned_cols=212  Identities=22%  Similarity=0.248  Sum_probs=170.6

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHH-HHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVS-FLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~-iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      +++|.|+||.||+|..  +|..||||++...     .....+..|.. +++.++||||+++++++.+  ..|+||||++|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG   80 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence            3578999999999998  6899999998622     22245556655 4677899999999998865  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|..++          .....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++.  
T Consensus        81 ~~L~~~l----------~~~~~~~~~~~~~~~~qi~~al~~lH~---~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~  147 (325)
T cd05604          81 GELFFHL----------QRERSFPEPRARFYAAEIASALGYLHS---INIVYRDLKPENILLDSQGHVVLTDFGLCKEGI  147 (325)
T ss_pred             CCHHHHH----------HHcCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHeEECCCCCEEEeecCCcccCC
Confidence            9999888          345678999999999999999999999   6799999999999999999999999998742  


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHH
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAE  547 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~  547 (683)
                                             ..++.++|||||||++|+|++|.+||.....     ......++.. ....++..+.
T Consensus       148 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~-----~~~~~~~~~~-~~~~~~~~~~  221 (325)
T cd05604         148 AQSDTTTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDV-----AEMYDNILHK-PLVLRPGASL  221 (325)
T ss_pred             CCCCCcccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCCCH-----HHHHHHHHcC-CccCCCCCCH
Confidence                                   2467899999999999999999999964321     1122223322 2233446788


Q ss_pred             HHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          548 ELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       548 ~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .+.+++.+||..+  |.+||++.+.+..
T Consensus       222 ~~~~ll~~ll~~~--p~~R~~~~~~~~~  247 (325)
T cd05604         222 TAWSILEELLEKD--RQRRLGAKEDFLE  247 (325)
T ss_pred             HHHHHHHHHhccC--HHhcCCCCCCHHH
Confidence            8999999999999  8899998654443

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=1.7e-33  Score=293.98  Aligned_cols=218  Identities=20%  Similarity=0.270  Sum_probs=172.5

Q ss_pred             cccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCc
Q 005680          345 KCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNL  415 (683)
Q Consensus       345 iG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL  415 (683)
                      +|+|+||.||++..  +|..||+|.+...     .....+..|+.++.+++||||+++++++.+  ..++||||++||+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L   80 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDL   80 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCH
Confidence            47899999999987  5899999998621     123345679999999999999999998865  78999999999999


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-----
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-----  490 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-----  490 (683)
                      .+++...        ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.++|+|||++..     
T Consensus        81 ~~~~~~~--------~~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~  149 (277)
T cd05607          81 KYHIYNV--------GERGLEMERVIHYSAQITCGILHLHS---MDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGK  149 (277)
T ss_pred             HHHHHhc--------cccCCCHHHHHHHHHHHHHHHHHHHH---CCEEEccCChHhEEEcCCCCEEEeeceeeeecCCCc
Confidence            9888532        33458999999999999999999999   7799999999999999999999999998742     


Q ss_pred             -------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHH
Q 005680          491 -------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAG  551 (683)
Q Consensus       491 -------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~  551 (683)
                                         ..++.++|||||||++|+|++|++||....... .........+..........++.++.+
T Consensus       150 ~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (277)
T cd05607         150 TITQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKV-AKEELKRRTLEDEVKFEHQNFTEESKD  228 (277)
T ss_pred             eeeccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchh-hHHHHHHHhhccccccccccCCHHHHH
Confidence                               246789999999999999999999986422110 111111222222221122356788999


Q ss_pred             HHHHhhhcCCCccccccHHHHHHHH
Q 005680          552 IALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       552 Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                      |+.+||+.|  |..||++.+++..+
T Consensus       229 li~~~L~~~--P~~R~~~~~~~~~~  251 (277)
T cd05607         229 ICRLFLAKK--PEDRLGSREKNDDP  251 (277)
T ss_pred             HHHHHhccC--HhhCCCCccchhhh
Confidence            999999999  88999998776433

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.1e-33  Score=299.26  Aligned_cols=217  Identities=15%  Similarity=0.170  Sum_probs=173.3

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      .+.+|+|+||.||++..  ++..||||++..     ......+..|+.++..++||||+++++++.+  ..|+||||++|
T Consensus         6 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~g   85 (331)
T cd05597           6 LKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVMDYYVG   85 (331)
T ss_pred             EEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEEecCCC
Confidence            35678999999999998  588999999862     1223568899999999999999999999866  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++..         ....+++..+..++.||+.||.|||+   ++|+||||||+|||++.++.+||+|||++..  
T Consensus        86 ~~L~~~l~~---------~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~  153 (331)
T cd05597          86 GDLLTLLSK---------FEDRLPEDMARFYLAEMVLAIDSVHQ---LGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLL  153 (331)
T ss_pred             CcHHHHHHH---------hcCCCCHHHHHHHHHHHHHHHHHHHh---CCeEECCCCHHHEEECCCCCEEEEECCceeecC
Confidence            999999942         23568999999999999999999999   7799999999999999999999999998632  


Q ss_pred             -----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC-C---
Q 005680          491 -----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG-N---  537 (683)
Q Consensus       491 -----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~-~---  537 (683)
                                                   ..++.++|||||||++|+|++|+.||......     .....+... .   
T Consensus       154 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~-----~~~~~i~~~~~~~~  228 (331)
T cd05597         154 ADGTVQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLV-----ETYGKIMNHKEHFQ  228 (331)
T ss_pred             CCCCccccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCCCHH-----HHHHHHHcCCCccc
Confidence                                         12456899999999999999999999643211     111222221 1   


Q ss_pred             CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          538 AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       538 ~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .+.....++..+.+++.+||..++.+..||++.+++..
T Consensus       229 ~~~~~~~~~~~~~~li~~ll~~~~~r~~r~~~~~~l~h  266 (331)
T cd05597         229 FPPDVTDVSEEAKDLIRRLICSPETRLGRNGLQDFKDH  266 (331)
T ss_pred             CCCccCCCCHHHHHHHHHHccCcccccCCCCHHHHhcC
Confidence            11122346889999999999776555568898888766

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=1.3e-33  Score=296.43  Aligned_cols=218  Identities=19%  Similarity=0.271  Sum_probs=169.7

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC---CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG---LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~---~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      .+.+|.|+||.||+|..  ++..||+|++...   .....+.+|+.++++++||||+++++++.+  ..++||||++ |+
T Consensus        10 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~-~~   88 (288)
T cd07871          10 LDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFEYLD-SD   88 (288)
T ss_pred             eeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEeCCC-cC
Confidence            35678999999999988  6789999998722   234567899999999999999999999866  6789999998 58


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++..         ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++.    
T Consensus        89 l~~~l~~---------~~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~  156 (288)
T cd07871          89 LKQYLDN---------CGNLMSMHNVKIFMFQLLRGLSYCHK---RKILHRDLKPQNLLINEKGELKLADFGLARAKSVP  156 (288)
T ss_pred             HHHHHHh---------cCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEECCCCCEEECcCcceeeccCC
Confidence            9988842         23457899999999999999999999   6799999999999999999999999998742    


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh----------HHHHHHH-----
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD----------QTTLMQV-----  533 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~----------~~~~~~i-----  533 (683)
                                            ..++.++|||||||++|+|+||++||..........          ......+     
T Consensus       157 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (288)
T cd07871         157 TKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVKEELHLIFRLLGTPTEETWPGITSNEE  236 (288)
T ss_pred             CccccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhccccchh
Confidence                                  236778999999999999999999995422110000          0000000     


Q ss_pred             ----hcCCC-----CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          534 ----LDGNA-----GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       534 ----ld~~~-----~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                          ..+..     ....+.++.++.+|+.+||..|  |.+|||+.++++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~d--p~~R~t~~~~l~  284 (288)
T cd07871         237 FRSYLFPQYRAQPLINHAPRLDTDGIDLLSSLLLYE--TKSRISAEAALR  284 (288)
T ss_pred             hhccccCccCCCchHHhCCCCCHHHHHHHHHhcCcC--cccCCCHHHHhc
Confidence                00000     0001235678999999999999  889999999874

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=3.8e-33  Score=295.08  Aligned_cols=222  Identities=23%  Similarity=0.395  Sum_probs=179.4

Q ss_pred             cccccccCCceEEEEEEE--CCe----eEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeec
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHA----SVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYM  410 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~----~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~  410 (683)
                      ..+++|.|+||.||+|.+  +|.    .||+|.+.....   ...+.+|+.+++.++||||++++|+|.. ..++|+||+
T Consensus        11 ~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~v~e~~   90 (303)
T cd05110          11 RVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPTIQLVTQLM   90 (303)
T ss_pred             eccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCCCceeeehhc
Confidence            346789999999999987  443    579998874332   2368899999999999999999999866 678999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~  490 (683)
                      ++|+|.+++..         ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++.
T Consensus        91 ~~g~l~~~~~~---------~~~~~~~~~~~~~~~qi~~~L~~LH~---~~ivH~dikp~Nill~~~~~~kL~Dfg~~~~  158 (303)
T cd05110          91 PHGCLLDYVHE---------HKDNIGSQLLLNWCVQIAKGMMYLEE---RRLVHRDLAARNVLVKSPNHVKITDFGLARL  158 (303)
T ss_pred             CCCCHHHHHHh---------cccCCCHHHHHHHHHHHHHHHHHHhh---cCeeccccccceeeecCCCceEEcccccccc
Confidence            99999999842         23468999999999999999999999   6799999999999999999999999998852


Q ss_pred             ---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhc-CCCCCC
Q 005680          491 ---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLD-GNAGIW  541 (683)
Q Consensus       491 ---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild-~~~~~~  541 (683)
                                                 ..++.++|||||||++|+|++ |..||.....      .....++. ......
T Consensus       159 ~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~~------~~~~~~~~~~~~~~~  232 (303)
T cd05110         159 LEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPT------REIPDLLEKGERLPQ  232 (303)
T ss_pred             ccCcccccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCH------HHHHHHHHCCCCCCC
Confidence                                       234678999999999999997 8888854211      11112222 222333


Q ss_pred             ChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          542 PLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       542 p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      +..++..+.+++..||..+  |..||++.+++..|+.+...
T Consensus       233 ~~~~~~~~~~li~~c~~~~--p~~Rp~~~~l~~~l~~~~~~  271 (303)
T cd05110         233 PPICTIDVYMVMVKCWMID--ADSRPKFKELAAEFSRMARD  271 (303)
T ss_pred             CCCCCHHHHHHHHHHcCCC--hhhCcCHHHHHHHHHHHHhc
Confidence            4456788999999999999  88999999999999987644

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=1.8e-33  Score=293.48  Aligned_cols=224  Identities=24%  Similarity=0.397  Sum_probs=177.5

Q ss_pred             ccccccCCceEEEEEEE------CCeeEEEEEcCCCC--CHHHHHHHHHHHHhcCCCCccceeccccc----ceeEEEee
Q 005680          342 FRLKCAGDWTNVYRGRL------NHASVAIKTLNNGL--SEEDFQAKVSFLTAVRHPHLVAVMGCCSE----LKCIVFEY  409 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~------~g~~VAvK~l~~~~--~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----~~~LV~Ey  409 (683)
                      .+.+|.|+||.||+|.+      ++..||||.+....  ....+.+|+.+++.++||||+++++++..    ..++||||
T Consensus         9 ~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~   88 (284)
T cd05081           9 IQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLRLVMEY   88 (284)
T ss_pred             eeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCceEEEEEe
Confidence            35678999999999974      46889999987332  23578899999999999999999997632    57899999


Q ss_pred             cCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCcc
Q 005680          410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNI  489 (683)
Q Consensus       410 ~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~  489 (683)
                      +++|+|.+++..         ....+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||++.
T Consensus        89 ~~~~~L~~~l~~---------~~~~l~~~~~~~~~~~l~~aL~~LH~---~~i~H~dlkp~nili~~~~~~~l~dfg~~~  156 (284)
T cd05081          89 LPYGSLRDYLQK---------HRERLDHRKLLLYASQICKGMEYLGS---KRYVHRDLATRNILVESENRVKIGDFGLTK  156 (284)
T ss_pred             cCCCCHHHHHHh---------cCcCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCCHhhEEECCCCeEEECCCcccc
Confidence            999999999942         23468999999999999999999999   679999999999999999999999999875


Q ss_pred             c----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHh-----h-----hhHHHHH
Q 005680          490 C----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAM-----A-----LDQTTLM  531 (683)
Q Consensus       490 ~----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~-----~-----~~~~~~~  531 (683)
                      .                            ..++.++|||||||++|||++|..|+.......     .     .....+.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (284)
T cd05081         157 VLPQDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYHLI  236 (284)
T ss_pred             cccCCCcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcchhhhhhcccccccccchHHHH
Confidence            2                            235678999999999999999876653221100     0     0001111


Q ss_pred             HHhc-CCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          532 QVLD-GNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       532 ~ild-~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                      ..+. ......+..++..+.+|+.+||..+  |..|||+.+|+..|+.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~li~~cl~~~--p~~Rpt~~ei~~~l~~~  283 (284)
T cd05081         237 ELLKNNGRLPAPPGCPAEIYAIMKECWNND--PSQRPSFSELALQVEAI  283 (284)
T ss_pred             HHHhcCCcCCCCCCCCHHHHHHHHHHccCC--hhhCCCHHHHHHHHHhc
Confidence            2222 2233344567889999999999999  88999999999999865

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=1.9e-33  Score=306.85  Aligned_cols=222  Identities=18%  Similarity=0.238  Sum_probs=177.4

Q ss_pred             hhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc--cee
Q 005680          334 ATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKC  404 (683)
Q Consensus       334 at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~  404 (683)
                      ..++|... +++|.|+||.||++..  ++..||||++..     ......+..|+.+++.++||||+++++++.+  ..|
T Consensus        41 ~~~~y~~~-~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~  119 (370)
T cd05596          41 KAEDFDVI-KVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLY  119 (370)
T ss_pred             CHHHcEEE-EEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEE
Confidence            34556544 5678999999999998  588999999862     1233457889999999999999999998866  689


Q ss_pred             EEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEec
Q 005680          405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISG  484 (683)
Q Consensus       405 LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~D  484 (683)
                      +||||++||+|.+++.           ...++...+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|
T Consensus       120 lv~Ey~~gg~L~~~l~-----------~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDLkp~NILl~~~~~~kL~D  185 (370)
T cd05596         120 MVMEYMPGGDLVNLMS-----------NYDIPEKWARFYTAEVVLALDAIHS---MGFIHRDVKPDNMLLDKSGHLKLAD  185 (370)
T ss_pred             EEEcCCCCCcHHHHHH-----------hcCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEEcCCCCEEEEe
Confidence            9999999999999883           2347888899999999999999999   6799999999999999999999999


Q ss_pred             CCCccc------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHh
Q 005680          485 LGLNIC------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVL  534 (683)
Q Consensus       485 FGla~~------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~il  534 (683)
                      ||++..                              ..++.++|||||||++|+|++|++||.....     ...+..+.
T Consensus       186 fG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~-----~~~~~~i~  260 (370)
T cd05596         186 FGTCMKMDANGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSL-----VGTYSKIM  260 (370)
T ss_pred             ccceeeccCCCcccCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCCH-----HHHHHHHH
Confidence            998732                              1256789999999999999999999975322     12233343


Q ss_pred             cC-CCCCCCh--hhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          535 DG-NAGIWPL--DLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       535 d~-~~~~~p~--~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .. ....+|.  .++..+.+|+.+||..+|+...|||+.+++..
T Consensus       261 ~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~r~~R~s~~ell~h  304 (370)
T cd05596         261 DHKNSLTFPDDIEISKQAKDLICAFLTDREVRLGRNGVDEIKSH  304 (370)
T ss_pred             cCCCcCCCCCcCCCCHHHHHHHHHHccChhhccCCCCHHHHhcC
Confidence            32 1223333  46889999999999988443339999998764

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=2.2e-33  Score=290.85  Aligned_cols=222  Identities=22%  Similarity=0.296  Sum_probs=170.7

Q ss_pred             ccccCCceEEEEEEEC----CeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          344 LKCAGDWTNVYRGRLN----HASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       344 liG~G~fG~Vykg~~~----g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      .+|+|+||.||+|.+.    +..+|+|.+.....   ...+.+|+.++++++||||++++|++.+  ..++||||+++|+
T Consensus         2 ~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~   81 (269)
T cd05087           2 EIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLGD   81 (269)
T ss_pred             cccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCCc
Confidence            4689999999999862    36799999874332   2468889999999999999999999876  6789999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++.....     .....+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.+||+|||++..    
T Consensus        82 L~~~l~~~~~-----~~~~~~~~~~~~~~~~qi~~al~~lH~---~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~  153 (269)
T cd05087          82 LKGYLRSCRK-----AELMTPDPTTLQRMACEIALGLLHLHK---NNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKE  153 (269)
T ss_pred             HHHHHHHhhh-----cccccccHHHHHHHHHHHHHHHHHHHH---CCEeccccCcceEEEcCCCcEEECCccccccccCc
Confidence            9999964311     123456788888999999999999999   6799999999999999999999999998742    


Q ss_pred             ------------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHH-hcCCC
Q 005680          491 ------------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQV-LDGNA  538 (683)
Q Consensus       491 ------------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~i-ld~~~  538 (683)
                                                    ..++.++||||||+++|+|++ |.+||.......... ...... .....
T Consensus       154 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~-~~~~~~~~~~~~  232 (269)
T cd05087         154 DYYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDEQVLT-YTVREQQLKLPK  232 (269)
T ss_pred             ceeecCCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCChHHHHH-HHhhcccCCCCC
Confidence                                          013678999999999999996 999986432211000 000000 00111


Q ss_pred             CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHH
Q 005680          539 GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELD  577 (683)
Q Consensus       539 ~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~  577 (683)
                      +......+..+.+++..|| .+  |.+|||+.+|+..|.
T Consensus       233 ~~~~~~~~~~~~~l~~~c~-~~--P~~Rpt~~~l~~~l~  268 (269)
T cd05087         233 PRLKLPLSDRWYEVMQFCW-LQ--PEQRPSAEEVHLLLS  268 (269)
T ss_pred             CccCCCCChHHHHHHHHHh-cC--cccCCCHHHHHHHhc
Confidence            2222345678999999998 57  789999999998764

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=3.1e-33  Score=291.57  Aligned_cols=226  Identities=23%  Similarity=0.380  Sum_probs=182.2

Q ss_pred             cccccCCceEEEEEEEC-------CeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeec
Q 005680          343 RLKCAGDWTNVYRGRLN-------HASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYM  410 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~-------g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~  410 (683)
                      +.+|.|+||.||+|...       +..||||++.....   ...+.+|+.++..++|||||++++++.+  ..++++||+
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~~~e~~   90 (283)
T cd05091          11 EELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLSMIFSYC   90 (283)
T ss_pred             HHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceEEEEEcC
Confidence            45688999999999872       37899999974332   2568899999999999999999999865  788999999


Q ss_pred             CCCCchhhhhhcccccc------cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEec
Q 005680          411 PNGNLRDKLFTSQRNYK------NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISG  484 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~------~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~D  484 (683)
                      ++++|.+++........      .......+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|
T Consensus        91 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~---~gi~H~dlkp~Nil~~~~~~~kl~D  167 (283)
T cd05091          91 SHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSS---HHVVHKDLATRNVLVFDKLNVKISD  167 (283)
T ss_pred             CCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHH---cCccccccchhheEecCCCceEecc
Confidence            99999999853211000      00123468999999999999999999999   6799999999999999999999999


Q ss_pred             CCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcC
Q 005680          485 LGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDG  536 (683)
Q Consensus       485 FGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~  536 (683)
                      ||+++.                           +.++.++|||||||++|||++ |.+||....     .......+...
T Consensus       168 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~-----~~~~~~~i~~~  242 (283)
T cd05091         168 LGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS-----NQDVIEMIRNR  242 (283)
T ss_pred             cccccccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCC-----HHHHHHHHHcC
Confidence            998642                           245778999999999999998 888875421     12334444555


Q ss_pred             CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHH
Q 005680          537 NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDE  578 (683)
Q Consensus       537 ~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~  578 (683)
                      .....+..++..+.+|+.+||+.+  |..||++.+|+..|+.
T Consensus       243 ~~~~~~~~~~~~~~~li~~cl~~~--p~~RP~~~~i~~~l~~  282 (283)
T cd05091         243 QVLPCPDDCPAWVYTLMLECWNEF--PSRRPRFKDIHSRLRT  282 (283)
T ss_pred             CcCCCCCCCCHHHHHHHHHHhCCC--cccCCCHHHHHHHhhC
Confidence            555567788999999999999999  8899999999998863

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.3e-33  Score=302.04  Aligned_cols=213  Identities=20%  Similarity=0.250  Sum_probs=175.0

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      .+.+|.|+||.||+|..  +|..||||++...     .....+..|+.++..++||||+++++++.+  ..|+||||+++
T Consensus         6 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   85 (350)
T cd05573           6 IKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVMEYMPG   85 (350)
T ss_pred             EEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEEcCCCC
Confidence            35678999999999998  5899999998721     334578899999999999999999999866  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+||||+.++.+||+|||++..  
T Consensus        86 ~~L~~~l~----------~~~~l~~~~~~~i~~qi~~aL~~LH~---~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~  152 (350)
T cd05573          86 GDLMNLLI----------RKDVFPEETARFYIAELVLALDSVHK---LGFIHRDIKPDNILIDADGHIKLADFGLCKKMN  152 (350)
T ss_pred             CCHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHeEECCCCCEEeecCCCCccCc
Confidence            99999993          34679999999999999999999999   7799999999999999999999999998742  


Q ss_pred             ----------------------------------------------------cCCCcccccccHHHHHHHHhhCCCCchh
Q 005680          491 ----------------------------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGL  518 (683)
Q Consensus       491 ----------------------------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~  518 (683)
                                                                          ..++.++|||||||++|+|++|++||..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~  232 (350)
T cd05573         153 KAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYS  232 (350)
T ss_pred             ccCcccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCC
Confidence                                                                2357799999999999999999999975


Q ss_pred             hHHHhhhhHHHHHHHhc---CCCCCCChhhHHHHHHHHHHhhhcCCCcccccc-HHHHHHH
Q 005680          519 VEKAMALDQTTLMQVLD---GNAGIWPLDLAEELAGIALKCLSADQDANRDLR-IAGVMKE  575 (683)
Q Consensus       519 ~~~~~~~~~~~~~~ild---~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs-~~eVl~~  575 (683)
                      ...     ......+..   ....+....+++.+.+|+.+||. |  |..||+ +.+++..
T Consensus       233 ~~~-----~~~~~~i~~~~~~~~~p~~~~~~~~~~~li~~ll~-d--p~~R~~s~~~ll~h  285 (350)
T cd05573         233 DTL-----QETYNKIINWKESLRFPPDPPVSPEAIDLICRLLC-D--PEDRLGSFEEIKSH  285 (350)
T ss_pred             CCH-----HHHHHHHhccCCcccCCCCCCCCHHHHHHHHHHcc-C--hhhcCCCHHHHhcC
Confidence            332     111222222   11111122368899999999997 8  789999 9999864

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=2.7e-33  Score=296.47  Aligned_cols=231  Identities=23%  Similarity=0.406  Sum_probs=181.8

Q ss_pred             cccccCCceEEEEEEE--CCe--eEEEEEcCCCC---CHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEEeecCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHA--SVAIKTLNNGL---SEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~--~VAvK~l~~~~---~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      ..+|+|+||.||+|.+  +|.  .+|+|.+....   ....+.+|+.++.++ +||||+++++++.+  ..|+||||+++
T Consensus        13 ~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~   92 (303)
T cd05088          13 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPH   92 (303)
T ss_pred             eeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEEEEeCCC
Confidence            5678999999999997  443  46888876322   235688999999999 89999999999866  78999999999


Q ss_pred             CCchhhhhhcccccc------cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          413 GNLRDKLFTSQRNYK------NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       413 gsL~~~L~~~~~~~~------~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      |+|.+++........      .......+++..++.++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||
T Consensus        93 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~---~gi~H~dlkp~Nili~~~~~~kl~dfg  169 (303)
T cd05088          93 GNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFG  169 (303)
T ss_pred             CcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHh---CCccccccchheEEecCCCcEEeCccc
Confidence            999999964421000      00123468999999999999999999999   779999999999999999999999999


Q ss_pred             Cccc------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCC
Q 005680          487 LNIC------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIW  541 (683)
Q Consensus       487 la~~------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~  541 (683)
                      ++..                        ..++.++|||||||++|+|+| |.+||.....     ......+........
T Consensus       170 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~-----~~~~~~~~~~~~~~~  244 (303)
T cd05088         170 LSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC-----AELYEKLPQGYRLEK  244 (303)
T ss_pred             cCcccchhhhcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCCh-----HHHHHHHhcCCcCCC
Confidence            8742                        235789999999999999998 9999854221     111222222223334


Q ss_pred             ChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          542 PLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       542 p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      +..++..+.+|+.+||+.+  |..||++.+++..|..+...-
T Consensus       245 ~~~~~~~~~~li~~~l~~~--p~~Rp~~~~il~~l~~~~~~~  284 (303)
T cd05088         245 PLNCDDEVYDLMRQCWREK--PYERPSFAQILVSLNRMLEER  284 (303)
T ss_pred             CCCCCHHHHHHHHHHcCCC--hhhCcCHHHHHHHHHHHHHhh
Confidence            4557788999999999999  779999999999998886543

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=3e-33  Score=291.99  Aligned_cols=226  Identities=25%  Similarity=0.406  Sum_probs=179.4

Q ss_pred             cccccCCceEEEEEEE------CCeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          343 RLKCAGDWTNVYRGRL------NHASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~------~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      +.+|+|+||.||+|.+      .+..||+|.+.....   ...+.+|+.+++.++||||+++++++..  ..|+||||++
T Consensus        11 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~   90 (283)
T cd05090          11 EELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCMLFEYLN   90 (283)
T ss_pred             eeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceEEEEEcCC
Confidence            4678999999999985      347899999974332   2468899999999999999999999865  7899999999


Q ss_pred             CCCchhhhhhcccccc-------cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEec
Q 005680          412 NGNLRDKLFTSQRNYK-------NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISG  484 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~-------~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~D  484 (683)
                      +|+|.+++........       .......+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|
T Consensus        91 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~---~~i~H~dlkp~nili~~~~~~kl~d  167 (283)
T cd05090          91 QGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSS---HFFVHKDLAARNILIGEQLHVKISD  167 (283)
T ss_pred             CCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHh---cCeehhccccceEEEcCCCcEEecc
Confidence            9999999853321000       00113458999999999999999999999   6799999999999999999999999


Q ss_pred             CCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcC
Q 005680          485 LGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDG  536 (683)
Q Consensus       485 FGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~  536 (683)
                      ||+++.                           ..++.++|||||||++|+|++ |.+||.....     ......+...
T Consensus       168 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~~-----~~~~~~~~~~  242 (283)
T cd05090         168 LGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSN-----QEVIEMVRKR  242 (283)
T ss_pred             ccccccccCCcceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCH-----HHHHHHHHcC
Confidence            998842                           235789999999999999998 9999854221     1112222222


Q ss_pred             CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHH
Q 005680          537 NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDE  578 (683)
Q Consensus       537 ~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~  578 (683)
                      .....+..++..+.+++.+||+.|  |..||++.+|++.|..
T Consensus       243 ~~~~~~~~~~~~~~~li~~cl~~~--p~~Rp~~~~i~~~l~~  282 (283)
T cd05090         243 QLLPCSEDCPPRMYSLMTECWQEG--PSRRPRFKDIHTRLRS  282 (283)
T ss_pred             CcCCCCCCCCHHHHHHHHHHcccC--cccCcCHHHHHHHhhc
Confidence            334455677889999999999999  8899999999988753

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=5.4e-34  Score=297.44  Aligned_cols=213  Identities=21%  Similarity=0.291  Sum_probs=178.5

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      .+.+|+|.||.|-+++.  .|+.||||.++.+     .+.-.+.+|++||+.|+||||+.+|.+|.+  ...|||||..+
T Consensus        58 ~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivMEYaS~  137 (668)
T KOG0611|consen   58 TETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVMEYASG  137 (668)
T ss_pred             HHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEEEecCC
Confidence            34568999999999987  6999999999832     233468899999999999999999999977  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |.|+||+          ...+.|++..+..|+.||++|+.|+|.   .+++|||||.+|||||.|+++||+||||+..  
T Consensus       138 GeLYDYi----------Ser~~LsErEaRhfFRQIvSAVhYCHk---nrVvHRDLKLENILLD~N~NiKIADFGLSNly~  204 (668)
T KOG0611|consen  138 GELYDYI----------SERGSLSEREARHFFRQIVSAVHYCHK---NRVVHRDLKLENILLDQNNNIKIADFGLSNLYA  204 (668)
T ss_pred             ccHHHHH----------HHhccccHHHHHHHHHHHHHHHHHHhh---ccceecccchhheeecCCCCeeeeccchhhhhc
Confidence            9999999          566789999999999999999999999   5699999999999999999999999999843  


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHH
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAE  547 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~  547 (683)
                                             ..-++.+|.|||||+||-|+.|..||+..+.     ...+.++-.+.. . .+..+.
T Consensus       205 ~~kfLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~Dh-----k~lvrQIs~GaY-r-EP~~PS  277 (668)
T KOG0611|consen  205 DKKFLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRDH-----KRLVRQISRGAY-R-EPETPS  277 (668)
T ss_pred             cccHHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCchH-----HHHHHHhhcccc-c-CCCCCc
Confidence                                   1236899999999999999999999987433     122223333321 1 224466


Q ss_pred             HHHHHHHHhhhcCCCccccccHHHHHHHH
Q 005680          548 ELAGIALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       548 ~l~~Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                      ....||.+||..|  |.+|.|+.+|....
T Consensus       278 dA~gLIRwmLmVN--P~RRATieDiAsHW  304 (668)
T KOG0611|consen  278 DASGLIRWMLMVN--PERRATIEDIASHW  304 (668)
T ss_pred             hHHHHHHHHHhcC--cccchhHHHHhhhh
Confidence            7889999999999  77999999987664

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=2.8e-33  Score=293.53  Aligned_cols=228  Identities=27%  Similarity=0.422  Sum_probs=182.1

Q ss_pred             cccccCCceEEEEEEEC-------CeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeec
Q 005680          343 RLKCAGDWTNVYRGRLN-------HASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYM  410 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~-------g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~  410 (683)
                      +++|+|+||.||+|...       ...||+|.+.....   ...+.+|+.+++.++||||++++++|..  ..++||||+
T Consensus         6 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   85 (290)
T cd05045           6 KTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLLIVEYA   85 (290)
T ss_pred             ccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEEEEEec
Confidence            56789999999999862       25699999874433   3568899999999999999999999865  789999999


Q ss_pred             CCCCchhhhhhccccc--------------ccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC
Q 005680          411 PNGNLRDKLFTSQRNY--------------KNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR  476 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~--------------~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~  476 (683)
                      ++|+|.+++.......              ........+++..++.++.|++.||.|||+   .+|+||||||+|||+++
T Consensus        86 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~---~~ivH~dikp~nill~~  162 (290)
T cd05045          86 KYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAE---MKLVHRDLAARNVLVAE  162 (290)
T ss_pred             CCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHH---CCeehhhhhhheEEEcC
Confidence            9999999986432100              000123468999999999999999999999   67999999999999999


Q ss_pred             CCcEEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHH
Q 005680          477 NLVAKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQT  528 (683)
Q Consensus       477 ~~~~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~  528 (683)
                      ++.+||+|||+++.                           ..++.++||||||+++|+|+| |..||.....      .
T Consensus       163 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~------~  236 (290)
T cd05045         163 GRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAP------E  236 (290)
T ss_pred             CCcEEeccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCCH------H
Confidence            99999999999742                           125678999999999999999 9999864221      1


Q ss_pred             HHHHHhc-CCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHH
Q 005680          529 TLMQVLD-GNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRK  581 (683)
Q Consensus       529 ~~~~ild-~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~  581 (683)
                      .+...+. ......|..++..+.+++.+||+.+  |.+||++.+++..|+.+..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~--P~~Rp~~~~i~~~l~~~~~  288 (290)
T cd05045         237 RLFNLLKTGYRMERPENCSEEMYNLMLTCWKQE--PDKRPTFADISKELEKMMV  288 (290)
T ss_pred             HHHHHHhCCCCCCCCCCCCHHHHHHHHHHccCC--cccCCCHHHHHHHHHHHHh
Confidence            2222222 2333445667889999999999999  7899999999999998854

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=1.1e-33  Score=303.27  Aligned_cols=212  Identities=23%  Similarity=0.324  Sum_probs=172.5

Q ss_pred             ccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEEeecCCC
Q 005680          344 LKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       344 liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      ++|+|+||.||+|..  ++..||||++...     .....+..|+.++.++ +||||+.+++++.+  ..|+||||+++|
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~   81 (327)
T cd05617           2 VIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNGG   81 (327)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCCC
Confidence            578999999999998  5789999999732     2234578899999888 69999999998865  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|..++.          ....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++.   
T Consensus        82 ~L~~~~~----------~~~~l~~~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~  148 (327)
T cd05617          82 DLMFHMQ----------RQRKLPEEHARFYAAEICIALNFLHE---RGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLG  148 (327)
T ss_pred             cHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEEeCCCCEEEeccccceeccC
Confidence            9999883          44579999999999999999999999   6799999999999999999999999998742   


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHh-hhhHHHHHHHhcCCCCCCChhhHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAM-ALDQTTLMQVLDGNAGIWPLDLAE  547 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~-~~~~~~~~~ild~~~~~~p~~~~~  547 (683)
                                            ..++.++|||||||++|+|++|++||....... ......+...+.......|..++.
T Consensus       149 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  228 (327)
T cd05617         149 PGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILEKPIRIPRFLSV  228 (327)
T ss_pred             CCCceecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHHHHhCCCCCCCCCCH
Confidence                                  246789999999999999999999996422110 011112222333334456667888


Q ss_pred             HHHHHHHHhhhcCCCccccccHH
Q 005680          548 ELAGIALKCLSADQDANRDLRIA  570 (683)
Q Consensus       548 ~l~~Li~~CL~~dP~p~~RPs~~  570 (683)
                      .+.+++.+||+.|  |..|+++.
T Consensus       229 ~~~~li~~~L~~d--P~~R~~~~  249 (327)
T cd05617         229 KASHVLKGFLNKD--PKERLGCQ  249 (327)
T ss_pred             HHHHHHHHHhccC--HHHcCCCC
Confidence            9999999999999  88999854

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=3.2e-33  Score=299.97  Aligned_cols=217  Identities=16%  Similarity=0.198  Sum_probs=174.5

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      .+.+|+|+||.||++..  ++..||+|++..     ......+..|+.++..++|+||+++++++.+  ..||||||+++
T Consensus         6 ~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~ey~~~   85 (332)
T cd05623           6 LKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVMDYYVG   85 (332)
T ss_pred             EEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEEeccCC
Confidence            35678999999999998  468899999862     1223457889999999999999999999866  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++..         ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..  
T Consensus        86 g~L~~~l~~---------~~~~l~~~~~~~~~~qi~~al~~lH~---~~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~  153 (332)
T cd05623          86 GDLLTLLSK---------FEDRLPEDMARFYLAEMVIAIDSVHQ---LHYVHRDIKPDNILMDMNGHIRLADFGSCLKLM  153 (332)
T ss_pred             CcHHHHHHH---------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHEEECCCCCEEEeecchheecc
Confidence            999999952         23468999999999999999999999   7799999999999999999999999998632  


Q ss_pred             -----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC-CCCC
Q 005680          491 -----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG-NAGI  540 (683)
Q Consensus       491 -----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~-~~~~  540 (683)
                                                   ..++.++|||||||++|+|++|++||.....     ...+..+... ....
T Consensus       154 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~~~-----~~~~~~i~~~~~~~~  228 (332)
T cd05623         154 EDGTVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAESL-----VETYGKIMNHKERFQ  228 (332)
T ss_pred             cCCcceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCCCH-----HHHHHHHhCCCcccc
Confidence                                         1256789999999999999999999964322     1122223222 1112


Q ss_pred             CC---hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          541 WP---LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       541 ~p---~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      +|   ..++..+.+|+.+||..++++..|+++.+++..
T Consensus       229 ~p~~~~~~s~~~~~li~~ll~~~~~r~~r~~~~~~~~h  266 (332)
T cd05623         229 FPAQVTDVSEDAKDLIRRLICSREHRLGQNGIEDFKQH  266 (332)
T ss_pred             CCCccccCCHHHHHHHHHHccChhhhcCCCCHHHHhCC
Confidence            22   356889999999999877666668899888766

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=1.9e-33  Score=303.01  Aligned_cols=231  Identities=23%  Similarity=0.364  Sum_probs=181.0

Q ss_pred             ccccccCCceEEEEEEE-------CCeeEEEEEcCCCCC---HHHHHHHHHHHHhc-CCCCccceeccccc---ceeEEE
Q 005680          342 FRLKCAGDWTNVYRGRL-------NHASVAIKTLNNGLS---EEDFQAKVSFLTAV-RHPHLVAVMGCCSE---LKCIVF  407 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~-------~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~---~~~LV~  407 (683)
                      .+++|.|+||.||+|..       +++.||+|++.....   ...+..|+.++.++ +||||++++++|..   ..++||
T Consensus        12 ~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~~~~~v~   91 (337)
T cd05054          12 GKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPGGPLMVIV   91 (337)
T ss_pred             hcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCCCCEEEEE
Confidence            46789999999999975       236899999874332   24577899999999 89999999998854   678999


Q ss_pred             eecCCCCchhhhhhcccccc---------------------------------------------------cccccccCC
Q 005680          408 EYMPNGNLRDKLFTSQRNYK---------------------------------------------------NCSRARALR  436 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~---------------------------------------------------~~~~~~~L~  436 (683)
                      ||+++|+|.++|........                                                   .......++
T Consensus        92 ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  171 (337)
T cd05054          92 EYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDELYKEPLT  171 (337)
T ss_pred             ecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhHHhhcCCC
Confidence            99999999999854321000                                                   000123789


Q ss_pred             HHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--------------------------
Q 005680          437 WLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--------------------------  490 (683)
Q Consensus       437 ~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--------------------------  490 (683)
                      +..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..                          
T Consensus       172 ~~~~~~~~~qi~~aL~~lH~---~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~  248 (337)
T cd05054         172 LEDLISYSFQVARGMEFLAS---RKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIF  248 (337)
T ss_pred             HHHHHHHHHHHHHHHHHHHh---CCeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccccCcHHhc
Confidence            99999999999999999999   6799999999999999999999999998742                          


Q ss_pred             -cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCcccccc
Q 005680          491 -DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLR  568 (683)
Q Consensus       491 -~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs  568 (683)
                       ..++.++|||||||++|+|++ |.+||.....    .......+........|...++.+.+++.+||+.+  |..||+
T Consensus       249 ~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~--p~~RPs  322 (337)
T cd05054         249 DKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQI----DEEFCRRLKEGTRMRAPEYATPEIYSIMLDCWHNN--PEDRPT  322 (337)
T ss_pred             CCCCCccccHHHHHHHHHHHHHcCCCCCCCCCc----cHHHHHHHhccCCCCCCccCCHHHHHHHHHHccCC--hhhCcC
Confidence             235778999999999999998 9999854211    11111122222333345567789999999999999  779999


Q ss_pred             HHHHHHHHHHHHH
Q 005680          569 IAGVMKELDEVRK  581 (683)
Q Consensus       569 ~~eVl~~L~~l~~  581 (683)
                      +.+|++.|+.+..
T Consensus       323 ~~ell~~l~~~~~  335 (337)
T cd05054         323 FSELVEILGDLLQ  335 (337)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998764

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=2.8e-33  Score=305.70  Aligned_cols=227  Identities=20%  Similarity=0.276  Sum_probs=178.6

Q ss_pred             HHHHhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc-
Q 005680          330 DIRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-  401 (683)
Q Consensus       330 ei~~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-  401 (683)
                      ++....++|... +.+|+|+||.||+|..  ++..||+|++..     ......+.+|+.++..++||||+++++++.+ 
T Consensus        37 ~~~~~~~~y~i~-~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~  115 (371)
T cd05622          37 DLRMKAEDYEVV-KVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDD  115 (371)
T ss_pred             hcCcchhhcEEE-EEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcC
Confidence            344555677665 5678999999999998  578999999862     1223457889999999999999999999866 


Q ss_pred             -ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcE
Q 005680          402 -LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVA  480 (683)
Q Consensus       402 -~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~  480 (683)
                       ..|+||||++||+|.+++.           ...++...+..++.||+.||.|||+   .+|+||||||+|||++.++.+
T Consensus       116 ~~~~lv~Ey~~gg~L~~~~~-----------~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDLkp~NIll~~~~~i  181 (371)
T cd05622         116 RYLYMVMEYMPGGDLVNLMS-----------NYDVPEKWARFYTAEVVLALDAIHS---MGFIHRDVKPDNMLLDKSGHL  181 (371)
T ss_pred             CEEEEEEcCCCCCcHHHHHH-----------hcCCCHHHHHHHHHHHHHHHHHHHH---CCEEeCCCCHHHEEECCCCCE
Confidence             6899999999999999983           2347888899999999999999999   779999999999999999999


Q ss_pred             EEecCCCccc------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHH
Q 005680          481 KISGLGLNIC------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTL  530 (683)
Q Consensus       481 KL~DFGla~~------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~  530 (683)
                      ||+|||++..                              ..++.++|||||||++|+|++|.+||.....     ...+
T Consensus       182 kL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~-----~~~~  256 (371)
T cd05622         182 KLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSL-----VGTY  256 (371)
T ss_pred             EEEeCCceeEcCcCCcccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCCCH-----HHHH
Confidence            9999998742                              0167899999999999999999999975322     1223


Q ss_pred             HHHhcC-CCCCCC--hhhHHHHHHHHHHhhhcCCCccccccHHHHHHHH
Q 005680          531 MQVLDG-NAGIWP--LDLAEELAGIALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       531 ~~ild~-~~~~~p--~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                      ..+... ....+|  ..++..+.+++..||..++.+..|+++.++++..
T Consensus       257 ~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~~~r~~r~~~~ei~~h~  305 (371)
T cd05622         257 SKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHL  305 (371)
T ss_pred             HHHHcCCCcccCCCcCCCCHHHHHHHHHHcCChhhhcCCCCHHHHhcCc
Confidence            333332 112223  3578899999999998443323478888887653

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.5e-33  Score=290.68  Aligned_cols=226  Identities=23%  Similarity=0.355  Sum_probs=181.7

Q ss_pred             ccccccCCceEEEEEEEC-------CeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEee
Q 005680          342 FRLKCAGDWTNVYRGRLN-------HASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEY  409 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~-------g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey  409 (683)
                      ...+|.|+||.||+|...       +..||+|.+.....   ...+.+|+.++..++||||+++++++.+  ..++||||
T Consensus        11 ~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~   90 (277)
T cd05032          11 IRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPTLVVMEL   90 (277)
T ss_pred             EeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCcEEEEec
Confidence            356789999999999873       26799999874332   3468899999999999999999999866  78999999


Q ss_pred             cCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCcc
Q 005680          410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNI  489 (683)
Q Consensus       410 ~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~  489 (683)
                      +++|+|.+++...............+++..++.++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++
T Consensus        91 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~di~p~nill~~~~~~kl~dfg~~~  167 (277)
T cd05032          91 MAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAA---KKFVHRDLAARNCMVAEDLTVKIGDFGMTR  167 (277)
T ss_pred             CCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHh---CCccccccChheEEEcCCCCEEECCcccch
Confidence            99999999996542111000123458999999999999999999999   679999999999999999999999999864


Q ss_pred             c---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCC
Q 005680          490 C---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIW  541 (683)
Q Consensus       490 ~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~  541 (683)
                      .                           ..++.++|||||||++|+|+| |.+||.....     ......+........
T Consensus       168 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~-----~~~~~~~~~~~~~~~  242 (277)
T cd05032         168 DIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSN-----EEVLKFVIDGGHLDL  242 (277)
T ss_pred             hhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCCH-----HHHHHHHhcCCCCCC
Confidence            2                           346788999999999999998 9999854221     122223333444455


Q ss_pred             ChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHH
Q 005680          542 PLDLAEELAGIALKCLSADQDANRDLRIAGVMKELD  577 (683)
Q Consensus       542 p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~  577 (683)
                      |..++..+.+++.+||+.+  |..|||+.+++..|+
T Consensus       243 ~~~~~~~~~~li~~~l~~~--p~~Rpt~~~l~~~l~  276 (277)
T cd05032         243 PENCPDKLLELMRMCWQYN--PKMRPTFLEIVSSLK  276 (277)
T ss_pred             CCCCCHHHHHHHHHHcCCC--hhhCCCHHHHHHHhc
Confidence            6677899999999999999  889999999998875

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=3e-33  Score=292.38  Aligned_cols=229  Identities=22%  Similarity=0.384  Sum_probs=180.9

Q ss_pred             CccccccccccCCceEEEEEEE------CCeeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceeccccc----ce
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL------NHASVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE----LK  403 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~------~g~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----~~  403 (683)
                      .|....+.+|+|+||.||++.+      ++..||+|.+....   ....+.+|+.+++.++||||+++++++.+    ..
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (284)
T cd05079           4 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI   83 (284)
T ss_pred             hhhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCce
Confidence            3455667789999999999974      46889999987332   23578899999999999999999998854    57


Q ss_pred             eEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEe
Q 005680          404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKIS  483 (683)
Q Consensus       404 ~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~  483 (683)
                      ++||||++|++|.+++..         ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+
T Consensus        84 ~lv~e~~~g~~L~~~l~~---------~~~~~~~~~~~~i~~~i~~aL~~lH~---~gi~H~dlkp~Nil~~~~~~~~l~  151 (284)
T cd05079          84 KLIMEFLPSGSLKEYLPR---------NKNKINLKQQLKYAVQICKGMDYLGS---RQYVHRDLAARNVLVESEHQVKIG  151 (284)
T ss_pred             EEEEEccCCCCHHHHHHh---------ccCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecccchheEEEcCCCCEEEC
Confidence            899999999999999842         22468999999999999999999999   779999999999999999999999


Q ss_pred             cCCCccc----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHH---------hhhh
Q 005680          484 GLGLNIC----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKA---------MALD  526 (683)
Q Consensus       484 DFGla~~----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~---------~~~~  526 (683)
                      |||++..                            ..++.++|||||||++|+|+|++.|+......         ....
T Consensus       152 dfg~~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~  231 (284)
T cd05079         152 DFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMT  231 (284)
T ss_pred             CCccccccccCccceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccchhhhhccccccccc
Confidence            9998742                            23567899999999999999987664321100         0000


Q ss_pred             -HHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          527 -QTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       527 -~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                       ......+......+.+..++..+.+|+.+||+.+  |..|||+.+++..|+.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--p~~Rpt~~~il~~l~~~  283 (284)
T cd05079         232 VTRLVRVLEEGKRLPRPPNCPEEVYQLMRKCWEFQ--PSKRTTFQNLIEGFEAI  283 (284)
T ss_pred             HHHHHHHHHcCccCCCCCCCCHHHHHHHHHHccCC--cccCcCHHHHHHHHHhh
Confidence             0111112222233335567889999999999999  78999999999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=1.4e-33  Score=301.74  Aligned_cols=210  Identities=21%  Similarity=0.245  Sum_probs=168.8

Q ss_pred             ccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHH-HHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          344 LKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVS-FLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       344 liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~-iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      ++|.|+||.||+|..  ++..||+|++...     .....+..|.. +++.++||||+++++++.+  ..|+||||+++|
T Consensus         2 ~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~~   81 (325)
T cd05602           2 VIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYINGG   81 (325)
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCCC
Confidence            578999999999998  5788999998621     12234445544 5678899999999999865  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++.   
T Consensus        82 ~L~~~~~----------~~~~~~~~~~~~~~~qi~~~L~~lH~---~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~  148 (325)
T cd05602          82 ELFYHLQ----------RERCFLEPRARFYAAEIASALGYLHS---LNIVYRDLKPENILLDSQGHIVLTDFGLCKENIE  148 (325)
T ss_pred             cHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHeEECCCCCEEEccCCCCccccc
Confidence            9999993          44568888999999999999999999   6799999999999999999999999998742   


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE  548 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~  548 (683)
                                            ..++.++|||||||++|+|++|.+||.....     ...+..+... ....++.++..
T Consensus       149 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-----~~~~~~i~~~-~~~~~~~~~~~  222 (325)
T cd05602         149 HNGTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNT-----AEMYDNILNK-PLQLKPNITNS  222 (325)
T ss_pred             CCCCcccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCCH-----HHHHHHHHhC-CcCCCCCCCHH
Confidence                                  2467899999999999999999999964322     1112222222 23345577889


Q ss_pred             HHHHHHHhhhcCCCccccccHHHHHH
Q 005680          549 LAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +.+++.+||+.|  |..||++.+.+.
T Consensus       223 ~~~li~~~l~~~--p~~R~~~~~~~~  246 (325)
T cd05602         223 ARHLLEGLLQKD--RTKRLGAKDDFM  246 (325)
T ss_pred             HHHHHHHHcccC--HHHCCCCCCCHH
Confidence            999999999999  889999876543

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=3e-33  Score=288.57  Aligned_cols=225  Identities=19%  Similarity=0.269  Sum_probs=179.6

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCC--C---CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNN--G---LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~--~---~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      .+.+|.|+||.||+|..  ++..||||.+..  .   .....+.+|+.+++.++||||+++++++.+  ..++||||+++
T Consensus         7 ~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~   86 (267)
T cd08228           7 EKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVLELADA   86 (267)
T ss_pred             eeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEEEecCC
Confidence            35678999999999997  689999998752  1   123468899999999999999999998865  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++....      .....++...+..++.||+.||.|||+   .+++|+||||+|||++.++.++|+|||++..  
T Consensus        87 ~~L~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~  157 (267)
T cd08228          87 GDLSQMIKYFK------KQKRLIPERTVWKYFVQLCSAVEHMHS---RRVMHRDIKPANVFITATGVVKLGDLGLGRFFS  157 (267)
T ss_pred             CcHHHHHHHhh------hccCCCCHHHHHHHHHHHHHHHHHHhh---CCeeCCCCCHHHEEEcCCCCEEECccccceecc
Confidence            99999885331      234568999999999999999999999   6799999999999999999999999998642  


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCC-ChhhH
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIW-PLDLA  546 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~-p~~~~  546 (683)
                                             ..++.++||||||+++|+|++|+.||.....   ........+.....+.. +..++
T Consensus       158 ~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  234 (267)
T cd08228         158 SKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKM---NLFSLCQKIEQCDYPPLPTEHYS  234 (267)
T ss_pred             chhHHHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccccc---cHHHHHHHHhcCCCCCCChhhcC
Confidence                                   2356789999999999999999999853211   00111111211122222 23567


Q ss_pred             HHHHHHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          547 EELAGIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       547 ~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      ..+.+++.+||..+  |..||++.+|++.|+.++
T Consensus       235 ~~~~~li~~cl~~~--p~~Rp~~~~vl~~~~~~~  266 (267)
T cd08228         235 EKLRELVSMCIYPD--PDQRPDIGYVHQIAKQMH  266 (267)
T ss_pred             HHHHHHHHHHCCCC--cccCcCHHHHHHHHHHhc
Confidence            88999999999999  889999999999998874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=3.9e-33  Score=288.84  Aligned_cols=220  Identities=24%  Similarity=0.385  Sum_probs=182.0

Q ss_pred             cccccCCceEEEEEEEC-----CeeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecCCC
Q 005680          343 RLKCAGDWTNVYRGRLN-----HASVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMPNG  413 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~-----g~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~gg  413 (683)
                      +.+|.|+||.||+|.+.     ...||||......   ..+.+.+|+.++++++||||++++++|.+ ..++||||+++|
T Consensus        12 ~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~lv~e~~~~~   91 (270)
T cd05056          12 RCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITENPVWIVMELAPLG   91 (270)
T ss_pred             eeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcCCCcEEEEEcCCCC
Confidence            56789999999999872     2469999987433   23578999999999999999999999876 788999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++..         ....+++..+..++.+++.||.|||+   .+++|+||||+|||++.++.+||+|||++..   
T Consensus        92 ~L~~~l~~---------~~~~~~~~~~~~~~~~l~~~l~~lH~---~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~  159 (270)
T cd05056          92 ELRSYLQV---------NKYSLDLASLILYSYQLSTALAYLES---KRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLED  159 (270)
T ss_pred             cHHHHHHh---------CCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccccChheEEEecCCCeEEccCceeeeccc
Confidence            99999942         23458999999999999999999999   6799999999999999999999999998742   


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhH
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLA  546 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~  546 (683)
                                             ..++.++|||||||++|+|++ |.+||.....     ......+........|..++
T Consensus       160 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~-----~~~~~~~~~~~~~~~~~~~~  234 (270)
T cd05056         160 ESYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKN-----NDVIGRIENGERLPMPPNCP  234 (270)
T ss_pred             ccceecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCH-----HHHHHHHHcCCcCCCCCCCC
Confidence                                   235678999999999999996 9999865322     11222233333334556788


Q ss_pred             HHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHH
Q 005680          547 EELAGIALKCLSADQDANRDLRIAGVMKELDEVRK  581 (683)
Q Consensus       547 ~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~  581 (683)
                      ..+.+++.+||..+  |..|||+.+++..|+.++.
T Consensus       235 ~~~~~li~~~l~~~--P~~Rpt~~~~~~~l~~~~~  267 (270)
T cd05056         235 PTLYSLMTKCWAYD--PSKRPRFTELKAQLSDILQ  267 (270)
T ss_pred             HHHHHHHHHHcCCC--hhhCcCHHHHHHHHHHHHh
Confidence            89999999999999  7799999999999999864

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.3e-33  Score=306.31  Aligned_cols=212  Identities=18%  Similarity=0.286  Sum_probs=171.7

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      .+++|.|+||.||+|..  +|+.||||++...     .....+.+|+.++..++||||+++++++.+  ..||||||++|
T Consensus         6 ~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~   85 (364)
T cd05599           6 IKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIMEYLPG   85 (364)
T ss_pred             EEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEECCCCC
Confidence            46778999999999998  6899999999621     223467889999999999999999999866  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++.          ....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..  
T Consensus        86 g~L~~~l~----------~~~~l~~~~~~~~~~qi~~aL~~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~  152 (364)
T cd05599          86 GDMMTLLM----------KKDTFTEEETRFYIAETILAIDSIHK---LGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLK  152 (364)
T ss_pred             cHHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeEECCCCCEEEeecccceecc
Confidence            99999994          44569999999999999999999999   6799999999999999999999999998631  


Q ss_pred             -------------------------------------------------------------cCCCcccccccHHHHHHHH
Q 005680          491 -------------------------------------------------------------DQLNVRSDIRAFGTLLLHL  509 (683)
Q Consensus       491 -------------------------------------------------------------~~~t~ksDVwSlGviL~eL  509 (683)
                                                                                   ..++.++|||||||++|+|
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el  232 (364)
T cd05599         153 KSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEM  232 (364)
T ss_pred             ccccccccccccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHh
Confidence                                                                         2357789999999999999


Q ss_pred             hhCCCCchhhHHHhhhhHHHHHHHhcC-CCCCCC--hhhHHHHHHHHHHhhhcCCCcccccc---HHHHHH
Q 005680          510 LTGRNWAGLVEKAMALDQTTLMQVLDG-NAGIWP--LDLAEELAGIALKCLSADQDANRDLR---IAGVMK  574 (683)
Q Consensus       510 ltG~~Pf~~~~~~~~~~~~~~~~ild~-~~~~~p--~~~~~~l~~Li~~CL~~dP~p~~RPs---~~eVl~  574 (683)
                      ++|.+||.....     ......+... .....|  ..+++.+.+|+.+|+. +  |..|++   +.+++.
T Consensus       233 ~~G~~Pf~~~~~-----~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~ll~-~--p~~R~~~~~~~~ll~  295 (364)
T cd05599         233 LVGYPPFCSDNP-----QETYRKIINWKETLQFPDEVPLSPEAKDLIKRLCC-E--AERRLGNNGVNEIKS  295 (364)
T ss_pred             hcCCCCCCCCCH-----HHHHHHHHcCCCccCCCCCCCCCHHHHHHHHHHcc-C--HhhcCCCCCHHHHhc
Confidence            999999965322     1112222221 111122  2467899999999996 7  668887   777765

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=1.8e-33  Score=300.58  Aligned_cols=207  Identities=21%  Similarity=0.312  Sum_probs=170.5

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEEeecC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      .+.+|+|+||.||+|..  ++..||||++...     .....+..|..++..+ +||+|+.+++++.+  ..||||||++
T Consensus         5 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~   84 (323)
T cd05616           5 LMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVMEYVN   84 (323)
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEEcCCC
Confidence            35678999999999998  5689999998732     1234567788888877 58999999998865  7899999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      +|+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++. 
T Consensus        85 ~g~L~~~~~----------~~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~  151 (323)
T cd05616          85 GGDLMYQIQ----------QVGRFKEPHAVFYAAEIAIGLFFLHS---KGIIYRDLKLDNVMLDSEGHIKIADFGMCKEN  151 (323)
T ss_pred             CCCHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCEEecCCCHHHeEECCCCcEEEccCCCceec
Confidence            999999983          44568999999999999999999999   6799999999999999999999999998752 


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhH
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLA  546 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~  546 (683)
                                              ..++.++|||||||++|+|+||++||.....     ...+..+.. ....+|..++
T Consensus       152 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~-----~~~~~~i~~-~~~~~p~~~s  225 (323)
T cd05616         152 MWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE-----DELFQSIME-HNVAYPKSMS  225 (323)
T ss_pred             CCCCCccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCCH-----HHHHHHHHh-CCCCCCCcCC
Confidence                                    3467899999999999999999999975322     122222332 3345667788


Q ss_pred             HHHHHHHHHhhhcCCCccccccH
Q 005680          547 EELAGIALKCLSADQDANRDLRI  569 (683)
Q Consensus       547 ~~l~~Li~~CL~~dP~p~~RPs~  569 (683)
                      .++.+|+.+||+.|  |..|++.
T Consensus       226 ~~~~~li~~~l~~~--p~~R~~~  246 (323)
T cd05616         226 KEAVAICKGLMTKH--PGKRLGC  246 (323)
T ss_pred             HHHHHHHHHHcccC--HHhcCCC
Confidence            99999999999999  7899984

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=3.6e-33  Score=290.71  Aligned_cols=229  Identities=22%  Similarity=0.336  Sum_probs=182.4

Q ss_pred             hcCccccccccccCCceEEEEEEEC-------CeeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceeccccc--c
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRLN-------HASVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--L  402 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~~-------g~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~  402 (683)
                      +++|... +++|+|+||.||+|.+.       +..||+|.+....   ....|..|+.+++.++||||+++++++.+  .
T Consensus         5 ~~~~~~~-~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   83 (277)
T cd05036           5 RDSITLL-RALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLP   83 (277)
T ss_pred             HHHcEee-eECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCC
Confidence            3455443 56789999999999983       4679999987332   23568999999999999999999998865  7


Q ss_pred             eeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCC---c
Q 005680          403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL---V  479 (683)
Q Consensus       403 ~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~---~  479 (683)
                      .++||||++||+|.+++.......   .....+++..++.++.||+.||.|||+   .+++||||||+|||++.++   .
T Consensus        84 ~~lv~e~~~g~~L~~~i~~~~~~~---~~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~nil~~~~~~~~~  157 (277)
T cd05036          84 RFILLELMAGGDLKSFLRENRPRP---ERPSSLTMKDLLFCARDVAKGCKYLEE---NHFIHRDIAARNCLLTCKGPGRV  157 (277)
T ss_pred             cEEEEecCCCCCHHHHHHHhCCCC---CCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccchheEEEeccCCCcc
Confidence            899999999999999996542110   122468999999999999999999999   6799999999999998765   6


Q ss_pred             EEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHH
Q 005680          480 AKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLM  531 (683)
Q Consensus       480 ~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~  531 (683)
                      +||+|||+++.                           ..++.++|||||||++|+|++ |..||.....     .....
T Consensus       158 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~-----~~~~~  232 (277)
T cd05036         158 AKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTN-----QEVME  232 (277)
T ss_pred             eEeccCccccccCCccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCH-----HHHHH
Confidence            99999998742                           236789999999999999997 9999864221     11222


Q ss_pred             HHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHH
Q 005680          532 QVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELD  577 (683)
Q Consensus       532 ~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~  577 (683)
                      .+........|..++..+.+++.+||+.+  |..|||+.+|++.|.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~i~~cl~~~--p~~Rps~~~vl~~l~  276 (277)
T cd05036         233 FVTGGGRLDPPKGCPGPVYRIMTDCWQHT--PEDRPNFATILERIQ  276 (277)
T ss_pred             HHHcCCcCCCCCCCCHHHHHHHHHHcCCC--cccCcCHHHHHHHhh
Confidence            23333344556778899999999999999  779999999998875

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=4.4e-33  Score=284.81  Aligned_cols=214  Identities=21%  Similarity=0.288  Sum_probs=178.7

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCC----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNN----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      +.+|.|+||.||+|..  +|..|++|.+..    ......+.+|+.+++.++||||+++++++.+  ..++||||+++++
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   85 (256)
T cd08529           6 NKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEYAENGD   85 (256)
T ss_pred             EEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEeCCCCc
Confidence            4568999999999998  689999999862    2234678899999999999999999999866  6899999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++...        ....+++..+..++.+++.||.|||+   .+|+|+||||+||+++.++.++|+|||+++.    
T Consensus        86 L~~~l~~~--------~~~~~~~~~~~~i~~~l~~al~~lH~---~~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~  154 (256)
T cd08529          86 LHKLLKMQ--------RGRPLPEDQVWRFFIQILLGLAHLHS---KKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDN  154 (256)
T ss_pred             HHHHHHHh--------cCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcceEEEeCCCCEEEcccccceeccCc
Confidence            99999532        24578999999999999999999999   6799999999999999999999999998643    


Q ss_pred             ---------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHH
Q 005680          491 ---------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEEL  549 (683)
Q Consensus       491 ---------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l  549 (683)
                                           ..++.++|||||||++|+|++|+.||.....     ......+........+..++..+
T Consensus       155 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  229 (256)
T cd08529         155 TNFANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQ-----GALILKIIRGVFPPVSQMYSQQL  229 (256)
T ss_pred             cchhhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHHHcCCCCCCccccCHHH
Confidence                                 2356789999999999999999999975332     12223333344444455678899


Q ss_pred             HHHHHHhhhcCCCccccccHHHHHH
Q 005680          550 AGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       550 ~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .+++.+||+.+  |..||++.++++
T Consensus       230 ~~~i~~~l~~~--p~~Rp~~~~ll~  252 (256)
T cd08529         230 AQLIDQCLTKD--YRQRPDTFQLLR  252 (256)
T ss_pred             HHHHHHHccCC--cccCcCHHHHhh
Confidence            99999999999  889999999875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7.2e-34  Score=311.35  Aligned_cols=216  Identities=21%  Similarity=0.321  Sum_probs=179.5

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC--CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCch
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG--LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLR  416 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~--~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~  416 (683)
                      .++|+|.||+||-|++  +...+|||-+...  ...+-+..|+.+.+.|+|.|||+++|+|.+  .+-|.||-+|||||.
T Consensus       581 vVLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSLS  660 (1226)
T KOG4279|consen  581 VVLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSLS  660 (1226)
T ss_pred             EEeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcHH
Confidence            4789999999999998  4567999999733  334568899999999999999999999977  556899999999999


Q ss_pred             hhhhhcccccccccccccC--CHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccccc-CCCcEEEecCCCccc---
Q 005680          417 DKLFTSQRNYKNCSRARAL--RWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD-RNLVAKISGLGLNIC---  490 (683)
Q Consensus       417 ~~L~~~~~~~~~~~~~~~L--~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld-~~~~~KL~DFGla~~---  490 (683)
                      ++|...         -++|  .+...-.+..||+.||.|||.   ..|||||||-+||||+ -.|.+||+|||.++.   
T Consensus       661 sLLrsk---------WGPlKDNEstm~fYtkQILeGLkYLHe---n~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAg  728 (1226)
T KOG4279|consen  661 SLLRSK---------WGPLKDNESTMNFYTKQILEGLKYLHE---NKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAG  728 (1226)
T ss_pred             HHHHhc---------cCCCccchhHHHHHHHHHHHHhhhhhh---cceeeccccCCcEEEeeccceEEecccccchhhcc
Confidence            999643         3455  778888899999999999999   5599999999999996 579999999998853   


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhH
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLA  546 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~  546 (683)
                                              .+|+.++|||||||++.||.||+|||......   ....+.--....-++.|..++
T Consensus       729 inP~TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~Elgsp---qAAMFkVGmyKvHP~iPeels  805 (1226)
T KOG4279|consen  729 INPCTETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSP---QAAMFKVGMYKVHPPIPEELS  805 (1226)
T ss_pred             CCccccccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCCh---hHhhhhhcceecCCCCcHHHH
Confidence                                    46899999999999999999999999643221   011111112234577889999


Q ss_pred             HHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          547 EELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       547 ~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .+...+|++|+.+|  |..||++.+++..
T Consensus       806 aeak~FilrcFepd--~~~R~sA~~LL~D  832 (1226)
T KOG4279|consen  806 AEAKNFILRCFEPD--PCDRPSAKDLLQD  832 (1226)
T ss_pred             HHHHHHHHHHcCCC--cccCccHHHhccC
Confidence            99999999999998  8899999999863

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=4.7e-33  Score=288.01  Aligned_cols=219  Identities=26%  Similarity=0.446  Sum_probs=179.9

Q ss_pred             ccccccCCceEEEEEEE--C---CeeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          342 FRLKCAGDWTNVYRGRL--N---HASVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~---g~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      .+.+|.|+||.||+|..  +   +..||+|.+....   ....+..|+.++.+++||||+++++++.+  ..++||||++
T Consensus         9 ~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   88 (267)
T cd05066           9 EKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYME   88 (267)
T ss_pred             eeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEcCC
Confidence            35678999999999987  2   3479999987432   23578899999999999999999999865  7899999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      +|+|.+++..         ....+++..+..|+.|++.||.|||+   .+++||||||+|||++.++.++|+|||++.. 
T Consensus        89 ~~~L~~~~~~---------~~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~h~dlkp~nili~~~~~~~l~dfg~~~~~  156 (267)
T cd05066          89 NGSLDAFLRK---------HDGQFTVIQLVGMLRGIASGMKYLSD---MGYVHRDLAARNILVNSNLVCKVSDFGLSRVL  156 (267)
T ss_pred             CCCHHHHHHh---------cCCCCCHHHHHHHHHHHHHHHHHHHH---CCEeehhhchhcEEECCCCeEEeCCCCccccc
Confidence            9999999942         23468999999999999999999999   7799999999999999999999999998642 


Q ss_pred             ---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCC
Q 005680          491 ---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWP  542 (683)
Q Consensus       491 ---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p  542 (683)
                                                 ..++.++|||||||++|++++ |..||.....     ......+.+....+.+
T Consensus       157 ~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~  231 (267)
T cd05066         157 EDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSN-----QDVIKAIEEGYRLPAP  231 (267)
T ss_pred             ccccceeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCCH-----HHHHHHHhCCCcCCCC
Confidence                                       235678999999999999886 9999854321     1122233333334445


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                      ..++..+.+++.+||+.+  |..||++.++++.|+.+
T Consensus       232 ~~~~~~~~~li~~~l~~~--p~~Rp~~~~i~~~l~~~  266 (267)
T cd05066         232 MDCPAALHQLMLDCWQKD--RNERPKFEQIVSILDKL  266 (267)
T ss_pred             CCCCHHHHHHHHHHcccC--chhCCCHHHHHHHHHhh
Confidence            567889999999999999  88999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=2.3e-33  Score=290.18  Aligned_cols=226  Identities=20%  Similarity=0.307  Sum_probs=180.8

Q ss_pred             HHHhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC--CHHHHHHHHHHHHhcCCCCccceeccccc--cee
Q 005680          331 IRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL--SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKC  404 (683)
Q Consensus       331 i~~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~--~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~  404 (683)
                      +..+++++.... ++|+|+||.||+|.+  ++..||+|.+....  ....+.+|+.+++.++||||+++++++..  ..+
T Consensus         3 ~~~~~~~~~~~~-~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~   81 (268)
T cd06624           3 YEYEYDENGERV-VLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFK   81 (268)
T ss_pred             cccccccCCceE-EEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEE
Confidence            456778887764 667899999999997  56889999987332  34578999999999999999999999865  789


Q ss_pred             EEEeecCCCCchhhhhhcccccccccccccC--CHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC-CCcEE
Q 005680          405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARAL--RWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR-NLVAK  481 (683)
Q Consensus       405 LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L--~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~-~~~~K  481 (683)
                      +|+||+++++|.+++...         ...+  ++..+..++.||+.||.|||+   .+|+||||||+||+++. ++.++
T Consensus        82 lv~e~~~~~~L~~~l~~~---------~~~~~~~~~~~~~~~~qi~~al~~lH~---~~i~h~dl~p~nil~~~~~~~~~  149 (268)
T cd06624          82 IFMEQVPGGSLSALLRSK---------WGPLKDNEQTIIFYTKQILEGLKYLHD---NQIVHRDIKGDNVLVNTYSGVVK  149 (268)
T ss_pred             EEEecCCCCCHHHHHHHh---------cccCCCcHHHHHHHHHHHHHHHHHHHH---CCEeecCCCHHHEEEcCCCCeEE
Confidence            999999999999999532         2334  788889999999999999999   77999999999999976 67999


Q ss_pred             EecCCCccc---------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHh
Q 005680          482 ISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVL  534 (683)
Q Consensus       482 L~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~il  534 (683)
                      |+|||++..                           ..++.++||||||+++|+|++|++||......   .........
T Consensus       150 l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~---~~~~~~~~~  226 (268)
T cd06624         150 ISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEP---QAAMFKVGM  226 (268)
T ss_pred             EecchhheecccCCCccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccCh---hhhHhhhhh
Confidence            999998632                           12567899999999999999999998643211   011111111


Q ss_pred             cCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          535 DGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       535 d~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ....+..|..+++.+.+++.+||..+  |.+|||+.+++.
T Consensus       227 ~~~~~~~~~~~~~~~~~li~~~l~~~--p~~Rpt~~~ll~  264 (268)
T cd06624         227 FKIHPEIPESLSAEAKNFILRCFEPD--PDKRASAHDLLQ  264 (268)
T ss_pred             hccCCCCCcccCHHHHHHHHHHcCCC--chhCCCHHHHHh
Confidence            22334556678889999999999999  789999999875

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=3.9e-33  Score=291.86  Aligned_cols=213  Identities=20%  Similarity=0.299  Sum_probs=166.6

Q ss_pred             cccccCCceEEEEEEE---CCeeEEEEEcCCC----CCHHHHHHHHHHHHhc---CCCCccceecccc-------cceeE
Q 005680          343 RLKCAGDWTNVYRGRL---NHASVAIKTLNNG----LSEEDFQAKVSFLTAV---RHPHLVAVMGCCS-------ELKCI  405 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~---~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l---~HpnIV~l~g~~~-------~~~~L  405 (683)
                      +.+|+|+||.||+|..   .|..||||.+...    .....+.+|+.++..+   +||||++++++|.       ...++
T Consensus         7 ~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~~~~~l   86 (290)
T cd07862           7 AEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTL   86 (290)
T ss_pred             eEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCCCcEEE
Confidence            5678999999999987   3688999998722    2234567788887766   6999999999873       15799


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecC
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGL  485 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DF  485 (683)
                      ||||++ ++|.+++...        ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+||
T Consensus        87 v~e~~~-~~l~~~~~~~--------~~~~~~~~~~~~i~~qi~~aL~~lH~---~~iiH~dlkp~Nil~~~~~~~kl~Df  154 (290)
T cd07862          87 VFEHVD-QDLTTYLDKV--------PEPGVPTETIKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLADF  154 (290)
T ss_pred             EEccCC-CCHHHHHHhC--------CCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEEcCCCCEEEccc
Confidence            999997 6999988532        23458999999999999999999999   67999999999999999999999999


Q ss_pred             CCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC-----
Q 005680          486 GLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG-----  536 (683)
Q Consensus       486 Gla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~-----  536 (683)
                      |++..                        ..++.++|||||||++|+|++|++||......     ..+..+++.     
T Consensus       155 g~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~-----~~~~~i~~~~~~~~  229 (290)
T cd07862         155 GLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDV-----DQLGKILDVIGLPG  229 (290)
T ss_pred             cceEeccCCcccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCHH-----HHHHHHHHHhCCCC
Confidence            98742                        24678899999999999999999999643221     111111110     


Q ss_pred             -----------------CCC----CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          537 -----------------NAG----IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       537 -----------------~~~----~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                                       ...    ...+.++..+.+|+.+||+.|  |.+|||+.++++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--P~~R~s~~~~l~  286 (290)
T cd07862         230 EEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFN--PAKRISAYSALS  286 (290)
T ss_pred             hhhchhhhcccchhccCCCCCCHHHHccCCCHHHHHHHHHHhccC--chhcCCHHHHhc
Confidence                             000    011245678899999999999  889999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=3.2e-33  Score=305.29  Aligned_cols=221  Identities=19%  Similarity=0.261  Sum_probs=176.6

Q ss_pred             hcCccccccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeE
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCI  405 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~L  405 (683)
                      .++|.. .+++|+|+||.||++..  ++..||+|++..     ......+.+|+.+++.++||||+++++++.+  ..|+
T Consensus        42 ~~~y~~-~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~l  120 (370)
T cd05621          42 AEDYDV-VKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLYM  120 (370)
T ss_pred             HHHCeE-EEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEE
Confidence            345544 35678999999999998  578999999862     1233567899999999999999999999866  7899


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecC
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGL  485 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DF  485 (683)
                      ||||++||+|.+++.           ...+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+||
T Consensus       121 v~Ey~~gg~L~~~l~-----------~~~~~~~~~~~~~~qil~aL~~LH~---~~IvHrDLKp~NILl~~~~~~kL~DF  186 (370)
T cd05621         121 VMEYMPGGDLVNLMS-----------NYDVPEKWAKFYTAEVVLALDAIHS---MGLIHRDVKPDNMLLDKHGHLKLADF  186 (370)
T ss_pred             EEcCCCCCcHHHHHH-----------hcCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHEEECCCCCEEEEec
Confidence            999999999999983           2347889999999999999999999   77999999999999999999999999


Q ss_pred             CCccc------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhc
Q 005680          486 GLNIC------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLD  535 (683)
Q Consensus       486 Gla~~------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild  535 (683)
                      |+|..                              ..++.++|||||||++|+|++|++||.....     ...+..+..
T Consensus       187 G~a~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~~~-----~~~~~~i~~  261 (370)
T cd05621         187 GTCMKMDETGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSL-----VGTYSKIMD  261 (370)
T ss_pred             ccceecccCCceecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCCCH-----HHHHHHHHh
Confidence            98742                              0156799999999999999999999964322     222334443


Q ss_pred             C-CCCCCCh--hhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          536 G-NAGIWPL--DLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       536 ~-~~~~~p~--~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      . ....+|.  .++..+.+++..||..++.+..|+++.++++.
T Consensus       262 ~~~~~~~p~~~~~s~~~~~li~~~L~~~~~r~~R~~~~e~l~h  304 (370)
T cd05621         262 HKNSLNFPEDVEISKHAKNLICAFLTDREVRLGRNGVEEIKQH  304 (370)
T ss_pred             CCcccCCCCcccCCHHHHHHHHHHccCchhccCCCCHHHHhcC
Confidence            2 2223333  46888999999999866443458999888764

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=3.5e-33  Score=289.98  Aligned_cols=223  Identities=24%  Similarity=0.417  Sum_probs=179.9

Q ss_pred             cccccCCceEEEEEEEC------CeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc----ceeEEEee
Q 005680          343 RLKCAGDWTNVYRGRLN------HASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE----LKCIVFEY  409 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~------g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----~~~LV~Ey  409 (683)
                      +.+|+|+||.||+|.++      +..||||.+.....   ...|.+|+.+++.+.||||+++++++..    ..++||||
T Consensus        10 ~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~   89 (284)
T cd05038          10 KQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSLRLIMEY   89 (284)
T ss_pred             eeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCceEEEEec
Confidence            56789999999999863      67899999984433   5679999999999999999999998855    67999999


Q ss_pred             cCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCcc
Q 005680          410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNI  489 (683)
Q Consensus       410 ~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~  489 (683)
                      +++++|.+++...         ...+++..+..++.|++.||.|||+   .+|+|+||||+||+++.++.++|+|||++.
T Consensus        90 ~~~~~l~~~l~~~---------~~~~~~~~~~~~~~~l~~aL~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~  157 (284)
T cd05038          90 LPSGSLRDYLQRH---------RDQINLKRLLLFSSQICKGMDYLGS---QRYIHRDLAARNILVESEDLVKISDFGLAK  157 (284)
T ss_pred             CCCCCHHHHHHhC---------ccccCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHhEEEcCCCCEEEccccccc
Confidence            9999999999522         2369999999999999999999999   679999999999999999999999999874


Q ss_pred             c----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHh-h--------hhHHHHHH
Q 005680          490 C----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAM-A--------LDQTTLMQ  532 (683)
Q Consensus       490 ~----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~-~--------~~~~~~~~  532 (683)
                      .                            ..++.++||||||+++|+|+||..|+....... .        .....+..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (284)
T cd05038         158 VLPEDKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLE  237 (284)
T ss_pred             ccccCCcceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhccccccccccccHHHHHH
Confidence            3                            224567999999999999999998875422110 0        00111222


Q ss_pred             Hhc-CCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          533 VLD-GNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       533 ild-~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                      .+. ......+..++..+.+|+.+||+.+  |..|||+.+|+++|+.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~li~~cl~~~--p~~Rpt~~ei~~~l~~i  283 (284)
T cd05038         238 LLKEGERLPRPPSCPDEVYDLMKLCWEAE--PQDRPSFADLILIVDRL  283 (284)
T ss_pred             HHHcCCcCCCCccCCHHHHHHHHHHhccC--hhhCCCHHHHHHHHhhc
Confidence            222 2223334566789999999999999  88999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=6.6e-33  Score=288.62  Aligned_cols=233  Identities=21%  Similarity=0.362  Sum_probs=185.7

Q ss_pred             cCccccccccccCCceEEEEEEE-C-----CeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc---ce
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL-N-----HASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE---LK  403 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~-~-----g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~---~~  403 (683)
                      ++|.. ..++|+|+||.||+|.+ .     +..||+|++.....   ...+.+|+.++.+++||||+++++++.+   ..
T Consensus         6 ~~~~~-~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~   84 (280)
T cd05043           6 DRVTL-SDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEPP   84 (280)
T ss_pred             hheEE-eeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCC
Confidence            44443 36778999999999998 3     58899999874322   3568899999999999999999998754   68


Q ss_pred             eEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEe
Q 005680          404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKIS  483 (683)
Q Consensus       404 ~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~  483 (683)
                      +++++|+++|+|.+++.......  ......+++..++.++.||+.||.|||+   .+++|+||||+|||++.++.+||+
T Consensus        85 ~~~~~~~~~~~L~~~l~~~~~~~--~~~~~~l~~~~~~~i~~~i~~~l~~LH~---~~i~H~di~p~nil~~~~~~~kl~  159 (280)
T cd05043          85 FVLYPYMNWGNLKLFLQQCRLGE--ANNPQALSTQQLVHMAIQIACGMSYLHK---RGVIHKDIAARNCVIDEELQVKIT  159 (280)
T ss_pred             EEEEEcCCCCcHHHHHHhccccc--cccccCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccCHhhEEEcCCCcEEEC
Confidence            89999999999999985432100  0122569999999999999999999999   679999999999999999999999


Q ss_pred             cCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhc
Q 005680          484 GLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLD  535 (683)
Q Consensus       484 DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild  535 (683)
                      |||+++.                           ..++.++|||||||++|++++ |++||.....     ......+..
T Consensus       160 d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~-----~~~~~~~~~  234 (280)
T cd05043         160 DNALSRDLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDP-----FEMAAYLKD  234 (280)
T ss_pred             CCCCcccccCCceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCH-----HHHHHHHHc
Confidence            9999852                           235678999999999999999 9999864321     111112222


Q ss_pred             CCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHH
Q 005680          536 GNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRK  581 (683)
Q Consensus       536 ~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~  581 (683)
                      ......+..+++.+.+++.+||..|  |..|||+.+++..|..+..
T Consensus       235 ~~~~~~~~~~~~~~~~li~~~l~~~--p~~Rps~~~~~~~l~~~~~  278 (280)
T cd05043         235 GYRLAQPINCPDELFAVMACCWALD--PEERPSFSQLVQCLTDFHA  278 (280)
T ss_pred             CCCCCCCCcCCHHHHHHHHHHcCCC--hhhCCCHHHHHHHHHHHHh
Confidence            3333345567889999999999999  7899999999999998864

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=2.4e-33  Score=306.74  Aligned_cols=213  Identities=19%  Similarity=0.217  Sum_probs=170.7

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      ..+.+|+|+||.||+|..  ++..||||++...     .....+.+|+.+++.++|||||+++++|.+  ..|||||||+
T Consensus         5 ~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E~~~   84 (382)
T cd05625           5 KIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMDYIP   84 (382)
T ss_pred             EEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEeCCC
Confidence            446788999999999998  6789999998732     123568899999999999999999999966  7899999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      +|+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++.. 
T Consensus        85 gg~L~~~l~----------~~~~~~e~~~~~~~~qi~~al~~lH~---~~ivHrDlKp~NILl~~~g~~kL~DFGla~~~  151 (382)
T cd05625          85 GGDMMSLLI----------RMGIFPEDLARFYIAELTCAVESVHK---MGFIHRDIKPDNILIDRDGHIKLTDFGLCTGF  151 (382)
T ss_pred             CCcHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEEeECCCCccc
Confidence            999999983          34568999999999999999999999   6799999999999999999999999998520 


Q ss_pred             -----------------------------------------------------------------------cCCCccccc
Q 005680          491 -----------------------------------------------------------------------DQLNVRSDI  499 (683)
Q Consensus       491 -----------------------------------------------------------------------~~~t~ksDV  499 (683)
                                                                                             ..++.++||
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~Di  231 (382)
T cd05625         152 RWTHDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDW  231 (382)
T ss_pred             cccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeE
Confidence                                                                                   246788999


Q ss_pred             ccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC---CCCCCChhhHHHHHHHHHHhhhcCCCcccccc---HHHHH
Q 005680          500 RAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG---NAGIWPLDLAEELAGIALKCLSADQDANRDLR---IAGVM  573 (683)
Q Consensus       500 wSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~---~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs---~~eVl  573 (683)
                      |||||++|||++|++||.....     ......++..   ...+....+++++.+++.+|+ .+  |.+|++   +.+++
T Consensus       232 wSlGvil~elltG~~Pf~~~~~-----~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~-~~--p~~R~~~~~~~ei~  303 (382)
T cd05625         232 WSVGVILYEMLVGQPPFLAQTP-----LETQMKVINWQTSLHIPPQAKLSPEASDLIIKLC-RG--PEDRLGKNGADEIK  303 (382)
T ss_pred             EechHHHHHHHhCCCCCCCCCH-----HHHHHHHHccCCCcCCCCcccCCHHHHHHHHHHc-cC--HhHcCCCCCHHHHh
Confidence            9999999999999999975322     1112222221   111222356788999998876 47  778887   66665


Q ss_pred             H
Q 005680          574 K  574 (683)
Q Consensus       574 ~  574 (683)
                      .
T Consensus       304 ~  304 (382)
T cd05625         304 A  304 (382)
T ss_pred             c
Confidence            4

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=100.00  E-value=5.6e-33  Score=291.14  Aligned_cols=234  Identities=21%  Similarity=0.336  Sum_probs=184.2

Q ss_pred             hcCccccccccccCCceEEEEEEEC-------CeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--c
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRLN-------HASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--L  402 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~~-------g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~  402 (683)
                      +++|... +.+|+|+||.||+|...       +..||+|.+.....   ...+.+|+.+++.++||||+++++++.+  .
T Consensus         5 ~~~~~i~-~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   83 (288)
T cd05061           5 REKITLL-RELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQP   83 (288)
T ss_pred             HHHceee-eeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC
Confidence            3444443 56789999999999752       45899999873332   2457889999999999999999998865  7


Q ss_pred             eeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEE
Q 005680          403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKI  482 (683)
Q Consensus       403 ~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL  482 (683)
                      .++||||+++|+|.+++...............+++..+..++.||+.||.|||+   ++|+||||||+|||++.++.++|
T Consensus        84 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~i~H~dikp~nili~~~~~~~L  160 (288)
T cd05061          84 TLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNA---KKFVHRDLAARNCMVAHDFTVKI  160 (288)
T ss_pred             cEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCCcCCCCChheEEEcCCCcEEE
Confidence            899999999999999996532111111123556788899999999999999999   67999999999999999999999


Q ss_pred             ecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHh
Q 005680          483 SGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVL  534 (683)
Q Consensus       483 ~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~il  534 (683)
                      +|||+++.                           ..++.++|||||||++|+|++ |.+||.....     ......+.
T Consensus       161 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~~-----~~~~~~~~  235 (288)
T cd05061         161 GDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSN-----EQVLKFVM  235 (288)
T ss_pred             CcCCccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCCH-----HHHHHHHH
Confidence            99998741                           245788999999999999999 7888864221     12223344


Q ss_pred             cCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          535 DGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       535 d~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                      +......+..++..+.+++.+||+.|  |..|||+.++++.|+..
T Consensus       236 ~~~~~~~~~~~~~~~~~li~~~l~~~--p~~Rps~~~ll~~l~~~  278 (288)
T cd05061         236 DGGYLDQPDNCPERVTDLMRMCWQFN--PKMRPTFLEIVNLLKDD  278 (288)
T ss_pred             cCCCCCCCCCCCHHHHHHHHHHcCCC--hhHCcCHHHHHHHHHhh
Confidence            44444455667889999999999999  88999999999888775

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=7.2e-33  Score=297.33  Aligned_cols=217  Identities=17%  Similarity=0.201  Sum_probs=171.9

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      .+.+|+|+||.||++..  +++.||||++..     ......+..|+.++..++|+||+.+++++.+  ..||||||++|
T Consensus         6 ~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~Ey~~g   85 (331)
T cd05624           6 IKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVMDYYVG   85 (331)
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEeCCCC
Confidence            35678999999999998  578999999862     1223457889999999999999999999865  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++..         ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..  
T Consensus        86 g~L~~~l~~---------~~~~l~~~~~~~~~~qi~~~L~~lH~---~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~  153 (331)
T cd05624          86 GDLLTLLSK---------FEDRLPEDMARFYIAEMVLAIHSIHQ---LHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMN  153 (331)
T ss_pred             CcHHHHHHH---------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCchHHEEEcCCCCEEEEeccceeecc
Confidence            999999952         23568999999999999999999999   7799999999999999999999999998632  


Q ss_pred             -----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC-CCCC
Q 005680          491 -----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG-NAGI  540 (683)
Q Consensus       491 -----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~-~~~~  540 (683)
                                                   ..++.++|||||||++|+|++|+.||.....     ...+..+... ....
T Consensus       154 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~-----~~~~~~i~~~~~~~~  228 (331)
T cd05624         154 QDGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESL-----VETYGKIMNHEERFQ  228 (331)
T ss_pred             CCCceeeccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCCCH-----HHHHHHHHcCCCccc
Confidence                                         1256789999999999999999999964322     1122223222 1122


Q ss_pred             CC---hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          541 WP---LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       541 ~p---~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      +|   ..++..+.+++.+||..++++..|+++.+++..
T Consensus       229 ~p~~~~~~~~~~~~li~~ll~~~~~~~~~~~~~~~~~h  266 (331)
T cd05624         229 FPSHITDVSEEAKDLIQRLICSRERRLGQNGIEDFKKH  266 (331)
T ss_pred             CCCccccCCHHHHHHHHHHccCchhhcCCCCHHHHhcC
Confidence            22   246789999999999876444446788777654

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=5.3e-33  Score=291.26  Aligned_cols=234  Identities=21%  Similarity=0.356  Sum_probs=184.9

Q ss_pred             cCccccccccccCCceEEEEEEEC-------CeeEEEEEcCCCCC---HHHHHHHHHHHHhc-CCCCccceeccccc--c
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRLN-------HASVAIKTLNNGLS---EEDFQAKVSFLTAV-RHPHLVAVMGCCSE--L  402 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~~-------g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~  402 (683)
                      ++|.. .+.+|+|+||.||++...       ...||+|.+.....   ...+.+|+.++.++ +||||++++++|.+  .
T Consensus        12 ~~~~~-~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~   90 (293)
T cd05053          12 DRLTL-GKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEGP   90 (293)
T ss_pred             hHeEE-eeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCCCC
Confidence            44543 357789999999999873       26799999874332   24588899999999 89999999999866  7


Q ss_pred             eeEEEeecCCCCchhhhhhcccccc------cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC
Q 005680          403 KCIVFEYMPNGNLRDKLFTSQRNYK------NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR  476 (683)
Q Consensus       403 ~~LV~Ey~~ggsL~~~L~~~~~~~~------~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~  476 (683)
                      .++||||+++|+|.+++........      .......+++..++.++.||+.||.|||+   .+|+||||||+|||++.
T Consensus        91 ~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~---~~ivH~dlkp~Nil~~~  167 (293)
T cd05053          91 LYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLAS---KKCIHRDLAARNVLVTE  167 (293)
T ss_pred             eEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHH---CCccccccceeeEEEcC
Confidence            8999999999999999964311000      00124568999999999999999999999   67999999999999999


Q ss_pred             CCcEEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHH
Q 005680          477 NLVAKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQT  528 (683)
Q Consensus       477 ~~~~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~  528 (683)
                      ++.+||+|||+++.                           ..++.++|||||||++|+|++ |..||.....     ..
T Consensus       168 ~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~-----~~  242 (293)
T cd05053         168 DHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPV-----EE  242 (293)
T ss_pred             CCeEEeCccccccccccccceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCCH-----HH
Confidence            99999999998742                           235678999999999999998 8888864221     11


Q ss_pred             HHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          529 TLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       529 ~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      ....+........|..++..+.+|+.+||..|  |..|||+.++++.|+.+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--p~~Rps~~eil~~l~~~~  292 (293)
T cd05053         243 LFKLLKEGYRMEKPQNCTQELYHLMRDCWHEV--PSQRPTFKQLVEDLDRML  292 (293)
T ss_pred             HHHHHHcCCcCCCCCCCCHHHHHHHHHHcccC--cccCcCHHHHHHHHHHhh
Confidence            12222333344556677889999999999999  779999999999998864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=8e-33  Score=284.42  Aligned_cols=218  Identities=31%  Similarity=0.481  Sum_probs=182.0

Q ss_pred             cccccCCceEEEEEEE-CCeeEEEEEcCC-CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCchhh
Q 005680          343 RLKCAGDWTNVYRGRL-NHASVAIKTLNN-GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRDK  418 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~-~g~~VAvK~l~~-~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~~  418 (683)
                      +.+|.|+||.||+|.. ++..||||.+.. ......+.+|+.++++++||||+++++++.+  ..++||||+++++|.++
T Consensus        12 ~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~   91 (261)
T cd05034          12 RKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEYMSKGSLLDF   91 (261)
T ss_pred             eeeccCcceEEEEEEEcCCceEEEEEecCCccCHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEeccCCCCHHHH
Confidence            5678999999999998 457899999873 4456789999999999999999999999865  78999999999999999


Q ss_pred             hhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--------
Q 005680          419 LFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--------  490 (683)
Q Consensus       419 L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--------  490 (683)
                      +...        ....+++..+..++.+|+.||.|||+   .+++|+||||+||+++.++.+||+|||++..        
T Consensus        92 i~~~--------~~~~~~~~~~~~~~~~i~~al~~lh~---~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~  160 (261)
T cd05034          92 LKSG--------EGKKLRLPQLVDMAAQIAEGMAYLES---RNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTA  160 (261)
T ss_pred             Hhcc--------ccCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCcchheEEEcCCCCEEECccccceeccchhhhh
Confidence            9532        23468999999999999999999999   6799999999999999999999999998642        


Q ss_pred             ------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHH
Q 005680          491 ------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAG  551 (683)
Q Consensus       491 ------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~  551 (683)
                                        ..++.++|||||||++|+|+| |+.||.....     ...+..+........+...+..+.+
T Consensus       161 ~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  235 (261)
T cd05034         161 REGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTN-----REVLEQVERGYRMPRPPNCPEELYD  235 (261)
T ss_pred             hhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCH-----HHHHHHHHcCCCCCCCCCCCHHHHH
Confidence                              235778999999999999999 9999854221     2223333333334445567889999


Q ss_pred             HHHHhhhcCCCccccccHHHHHHHHHH
Q 005680          552 IALKCLSADQDANRDLRIAGVMKELDE  578 (683)
Q Consensus       552 Li~~CL~~dP~p~~RPs~~eVl~~L~~  578 (683)
                      ++.+||..+  |..||++.++...|+.
T Consensus       236 ~i~~~l~~~--p~~Rp~~~~l~~~l~~  260 (261)
T cd05034         236 LMLQCWDKD--PEERPTFEYLQSFLED  260 (261)
T ss_pred             HHHHHcccC--cccCCCHHHHHHHHhc
Confidence            999999999  7799999999988864

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=7.4e-33  Score=286.55  Aligned_cols=219  Identities=25%  Similarity=0.426  Sum_probs=178.7

Q ss_pred             ccccccCCceEEEEEEE--CC---eeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          342 FRLKCAGDWTNVYRGRL--NH---ASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g---~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      .+.+|+|+||.||+|.+  ++   ..||||.+.....   ...|..|+.+++.++||||+++++++.+  ..++||||++
T Consensus         9 ~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e~~~   88 (269)
T cd05065           9 EEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMIITEFME   88 (269)
T ss_pred             EeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEEEecCC
Confidence            35678999999999997  23   3699999874322   3578999999999999999999999866  7799999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      +|+|.+++..         ....+++..++.++.|++.||.|||+   .+++|+||||+|||++.++.+||+|||++.. 
T Consensus        89 ~~~L~~~l~~---------~~~~~~~~~~~~i~~~l~~al~~lH~---~g~~H~dl~p~nili~~~~~~kl~dfg~~~~~  156 (269)
T cd05065          89 NGALDSFLRQ---------NDGQFTVIQLVGMLRGIAAGMKYLSE---MNYVHRDLAARNILVNSNLVCKVSDFGLSRFL  156 (269)
T ss_pred             CCcHHHHHhh---------CCCCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccChheEEEcCCCcEEECCCcccccc
Confidence            9999999842         23468999999999999999999999   6799999999999999999999999998632 


Q ss_pred             -----------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCC
Q 005680          491 -----------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGI  540 (683)
Q Consensus       491 -----------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~  540 (683)
                                                   ..++.++|||||||++|||++ |.+||.....     ......+......+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~-----~~~~~~i~~~~~~~  231 (269)
T cd05065         157 EDDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSN-----QDVINAIEQDYRLP  231 (269)
T ss_pred             ccCccccccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCH-----HHHHHHHHcCCcCC
Confidence                                         234678999999999999886 9999864322     11122222223334


Q ss_pred             CChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          541 WPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       541 ~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                      .+..++..+.+++.+||..+  |..||++.+|+..|+.+
T Consensus       232 ~~~~~~~~~~~li~~~l~~~--p~~Rp~~~~i~~~l~~~  268 (269)
T cd05065         232 PPMDCPTALHQLMLDCWQKD--RNARPKFGQIVSTLDKM  268 (269)
T ss_pred             CcccCCHHHHHHHHHHcCCC--hhhCcCHHHHHHHHHhh
Confidence            45567889999999999999  88999999999988764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=4.6e-33  Score=290.61  Aligned_cols=225  Identities=25%  Similarity=0.399  Sum_probs=180.1

Q ss_pred             cccccCCceEEEEEEE-------CCeeEEEEEcCCCC--CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          343 RLKCAGDWTNVYRGRL-------NHASVAIKTLNNGL--SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~-------~g~~VAvK~l~~~~--~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      ..+|+|+||.||++..       ++..||+|.+....  ....+.+|+.+++.++||||+++++++.+  ..++||||++
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   90 (280)
T cd05092          11 WELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLLMVFEYMR   90 (280)
T ss_pred             cccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceEEEEecCC
Confidence            4567899999999964       35689999986322  24579999999999999999999999865  7899999999


Q ss_pred             CCCchhhhhhcccccc-----cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          412 NGNLRDKLFTSQRNYK-----NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~-----~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      +|+|.+++........     .......+++..+..++.||+.||.|||+   .+|+||||||+|||+++++.+||+|||
T Consensus        91 ~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~---~~i~H~dlkp~nil~~~~~~~kL~dfg  167 (280)
T cd05092          91 HGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLAS---LHFVHRDLATRNCLVGQGLVVKIGDFG  167 (280)
T ss_pred             CCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHH---CCeecccccHhhEEEcCCCCEEECCCC
Confidence            9999999964321000     00112458999999999999999999999   679999999999999999999999999


Q ss_pred             Cccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCC
Q 005680          487 LNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNA  538 (683)
Q Consensus       487 la~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~  538 (683)
                      ++..                           ..++.++|||||||++|+|++ |.+||.....     ......+.....
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~-----~~~~~~~~~~~~  242 (280)
T cd05092         168 MSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSN-----TEAIECITQGRE  242 (280)
T ss_pred             ceeEcCCCceeecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCCH-----HHHHHHHHcCcc
Confidence            8741                           235778999999999999998 8999854222     222333444444


Q ss_pred             CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHH
Q 005680          539 GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELD  577 (683)
Q Consensus       539 ~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~  577 (683)
                      ...+..+++.+.+|+.+||+.|  |..||++.+|+..|+
T Consensus       243 ~~~~~~~~~~~~~li~~cl~~~--P~~Rp~~~~l~~~l~  279 (280)
T cd05092         243 LERPRTCPPEVYAIMQGCWQRE--PQQRMVIKDIHSRLQ  279 (280)
T ss_pred             CCCCCCCCHHHHHHHHHHccCC--hhhCCCHHHHHHHHh
Confidence            4455677889999999999999  889999999998875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.5e-33  Score=285.07  Aligned_cols=220  Identities=18%  Similarity=0.294  Sum_probs=178.8

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC-------CHHHHHHHHHHHHhcCCCCccceeccccc--cee
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-------SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKC  404 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-------~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~  404 (683)
                      ++|.. .+++|.|+||.||+|..  ++..||+|.+....       ....+.+|+.++.+++||||+++++++.+  ..+
T Consensus         2 ~~~~~-~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   80 (263)
T cd06625           2 TNWRR-GKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLS   80 (263)
T ss_pred             Ccccc-cceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEE
Confidence            34544 35678999999999987  68999999986221       12468889999999999999999999866  789


Q ss_pred             EEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEec
Q 005680          405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISG  484 (683)
Q Consensus       405 LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~D  484 (683)
                      +||||+++++|.+++.          ....+++..+..++.|++.||.|||+   .+|+|+||+|+||+++.++.++|+|
T Consensus        81 ~v~e~~~~~~l~~~~~----------~~~~~~~~~~~~~~~~l~~~l~~lH~---~~i~H~dl~p~nilv~~~~~~~l~d  147 (263)
T cd06625          81 IFMEYMPGGSVKDQLK----------AYGALTETVTRKYTRQILEGVEYLHS---NMIVHRDIKGANILRDSAGNVKLGD  147 (263)
T ss_pred             EEEEECCCCcHHHHHH----------HhCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEee
Confidence            9999999999999983          44568999999999999999999999   6799999999999999999999999


Q ss_pred             CCCccc----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC
Q 005680          485 LGLNIC----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG  536 (683)
Q Consensus       485 FGla~~----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~  536 (683)
                      ||++..                            ..++.++||||||+++|+|++|++||......    ..........
T Consensus       148 fg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~----~~~~~~~~~~  223 (263)
T cd06625         148 FGASKRLQTICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFEAM----AAIFKIATQP  223 (263)
T ss_pred             cccceeccccccccccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccchH----HHHHHHhccC
Confidence            998742                            12467899999999999999999998643221    1111111222


Q ss_pred             CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          537 NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       537 ~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .....|..++..+.+++.+||..+  |..|||+.+++..
T Consensus       224 ~~~~~~~~~~~~~~~li~~~l~~~--p~~Rpt~~~ll~~  260 (263)
T cd06625         224 TNPQLPSHVSPDARNFLRRTFVEN--AKKRPSAEELLRH  260 (263)
T ss_pred             CCCCCCccCCHHHHHHHHHHhhcC--cccCCCHHHHhhC
Confidence            344566678889999999999999  7899999998764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=3.3e-33  Score=316.47  Aligned_cols=228  Identities=19%  Similarity=0.284  Sum_probs=185.1

Q ss_pred             HHHhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC-C---CHHHHHHHHHHHHhcCCCCccceeccccc---
Q 005680          331 IRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-L---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE---  401 (683)
Q Consensus       331 i~~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~---  401 (683)
                      +....++|... +++|.|+||.||+|..  +|..||||++... .   ....+.+|+.++..++|+||+++++.+..   
T Consensus        27 ~~~~~~rY~i~-~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~  105 (496)
T PTZ00283         27 AKEQAKKYWIS-RVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDP  105 (496)
T ss_pred             ccccCCCEEEE-EEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccc
Confidence            33445566544 5678999999999987  6899999998632 1   23467889999999999999999876632   


Q ss_pred             -------ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccc
Q 005680          402 -------LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL  474 (683)
Q Consensus       402 -------~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILl  474 (683)
                             ..++||||+++|+|.++|....      .....+++..+..|+.|++.||.|||+   .+|+||||||+|||+
T Consensus       106 ~~~~~~~~i~lV~Ey~~~gsL~~~l~~~~------~~~~~l~e~~~~~i~~qll~aL~~lH~---~~IiHrDLKP~NILl  176 (496)
T PTZ00283        106 RNPENVLMIALVLDYANAGDLRQEIKSRA------KTNRTFREHEAGLLFIQVLLAVHHVHS---KHMIHRDIKSANILL  176 (496)
T ss_pred             cCcccceEEEEEEeCCCCCcHHHHHHHhh------ccCCCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEE
Confidence                   2579999999999999996432      234579999999999999999999999   779999999999999


Q ss_pred             cCCCcEEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhH
Q 005680          475 DRNLVAKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQ  527 (683)
Q Consensus       475 d~~~~~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~  527 (683)
                      +.++.+||+|||+++.                           ..++.++|||||||++|+|++|++||.....     .
T Consensus       177 ~~~~~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~~-----~  251 (496)
T PTZ00283        177 CSNGLVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGENM-----E  251 (496)
T ss_pred             eCCCCEEEEecccCeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCH-----H
Confidence            9999999999998742                           2467899999999999999999999964221     2


Q ss_pred             HHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          528 TTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       528 ~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ..+..++.......|..+++.+.+|+.+||+.|  |..||++.+++..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d--P~~RPs~~ell~~  297 (496)
T PTZ00283        252 EVMHKTLAGRYDPLPPSISPEMQEIVTALLSSD--PKRRPSSSKLLNM  297 (496)
T ss_pred             HHHHHHhcCCCCCCCCCCCHHHHHHHHHHcccC--hhhCcCHHHHHhC
Confidence            223344444445567788899999999999999  7899999999864

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=5.8e-33  Score=286.41  Aligned_cols=224  Identities=20%  Similarity=0.278  Sum_probs=179.6

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      +.+|.|+||.||+|..  +|..||||.+...     .....+.+|+.+++.++||||+++++++.+  ..++||||++++
T Consensus         8 ~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~~   87 (267)
T cd08229           8 KKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAG   87 (267)
T ss_pred             hhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEEEecCCC
Confidence            5678999999999997  7899999987621     123578899999999999999999999865  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++....      .....+++..++.++.||+.||.|||+   .+++|+||||+||+++.++.++|+|||++..   
T Consensus        88 ~L~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~  158 (267)
T cd08229          88 DLSRMIKHFK------KQKRLIPEKTVWKYFVQLCSALEHMHS---RRVMHRDIKPANVFITATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             CHHHHHHHhh------ccCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCCEEECcchhhhcccc
Confidence            9999985331      234578999999999999999999999   6799999999999999999999999997632   


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCC-ChhhHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIW-PLDLAE  547 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~-p~~~~~  547 (683)
                                            ..++.++||||||+++|+|++|..||......   .......+.....+.. +..++.
T Consensus       159 ~~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  235 (267)
T cd08229         159 KTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN---LYSLCKKIEQCDYPPLPSDHYSE  235 (267)
T ss_pred             CCcccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccch---HHHHhhhhhcCCCCCCCcccccH
Confidence                                  23567899999999999999999998532110   0111112222111222 235778


Q ss_pred             HHHHHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          548 ELAGIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       548 ~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      .+.+++.+||..|  |..|||+.+|++.+.++.
T Consensus       236 ~~~~li~~~l~~~--p~~Rpt~~~i~~~~~~~~  266 (267)
T cd08229         236 ELRQLVNMCINPD--PEKRPDITYVYDVAKRMH  266 (267)
T ss_pred             HHHHHHHHhcCCC--cccCCCHHHHHHHHhhhc
Confidence            9999999999999  789999999999998763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=5.9e-33  Score=298.43  Aligned_cols=225  Identities=20%  Similarity=0.247  Sum_probs=175.4

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEe
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFE  408 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~E  408 (683)
                      ++|.. .+.+|.|+||.||++.+  +|..||+|.+.....   ...+.+|+.++..++|||||+++++|.+  ..+||||
T Consensus         5 ~~y~~-~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   83 (333)
T cd06650           5 DDFEK-ISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   83 (333)
T ss_pred             hhhhe-eccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEe
Confidence            44544 35678999999999998  578999999874322   3568899999999999999999999865  7899999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCc
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN  488 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla  488 (683)
                      |+++|+|.+++.          ....+++..+..++.+++.||.|||+.  .+|+||||||+|||++.++.+||+|||++
T Consensus        84 ~~~~~~L~~~l~----------~~~~~~~~~~~~~~~~l~~~l~~lH~~--~~ivH~dlkp~Nili~~~~~~kL~Dfg~~  151 (333)
T cd06650          84 HMDGGSLDQVLK----------KAGRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVS  151 (333)
T ss_pred             cCCCCcHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHhc--CCEEecCCChhhEEEcCCCCEEEeeCCcc
Confidence            999999999993          445689999999999999999999972  25999999999999999999999999987


Q ss_pred             cc-----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh-------------------
Q 005680          489 IC-----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD-------------------  526 (683)
Q Consensus       489 ~~-----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~-------------------  526 (683)
                      ..                       ..++.++|||||||++|+|++|+.||..........                   
T Consensus       152 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (333)
T cd06650         152 GQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPDAKELELMFGCPVEGDPAESETSPRP  231 (333)
T ss_pred             hhhhhhccccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcchhHHHHHhcCcccCCccccccCccc
Confidence            42                       246788999999999999999999986422100000                   


Q ss_pred             --------------------HHHHHHHhcCCCCCCCh-hhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          527 --------------------QTTLMQVLDGNAGIWPL-DLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       527 --------------------~~~~~~ild~~~~~~p~-~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                                          ......++....+..+. ..+.++.+|+.+||+.|  |.+|||+.+++..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~--P~~Rpt~~ell~h  299 (333)
T cd06650         232 RPPGRPLSSYGPDSRPPMAIFELLDYIVNEPPPKLPSGVFGAEFQDFVNKCLIKN--PAERADLKQLMVH  299 (333)
T ss_pred             CCccchhhhhcccccccccHHHHHHHHhcCCCccCCCCCcCHHHHHHHHHhccCC--cccCcCHHHHhhC
Confidence                                00001111111111111 25678999999999999  8899999999754

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=5.9e-33  Score=289.61  Aligned_cols=218  Identities=17%  Similarity=0.289  Sum_probs=175.7

Q ss_pred             ccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC--CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          338 FSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL--SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       338 F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~--~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      |.+..+.+|.|+||.||+|..  ++..||+|.+....  ....+.+|+.+++.++||||++++++|..  ..++||||++
T Consensus         6 ~~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~   85 (282)
T cd06643           6 FWEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCA   85 (282)
T ss_pred             HHHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecC
Confidence            444456688999999999998  57889999986332  24568899999999999999999998865  7899999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      +|+|..++..         ...++++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++.. 
T Consensus        86 ~~~l~~~~~~---------~~~~l~~~~~~~~~~qi~~~L~~LH~---~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~  153 (282)
T cd06643          86 GGAVDAVMLE---------LERPLTEPQIRVVCKQTLEALNYLHE---NKIIHRDLKAGNILFTLDGDIKLADFGVSAKN  153 (282)
T ss_pred             CCcHHHHHHh---------cCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCcccEEEccCCCEEEccccccccc
Confidence            9999988742         23569999999999999999999999   6799999999999999999999999998732 


Q ss_pred             -----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC--CCC
Q 005680          491 -----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG--NAG  539 (683)
Q Consensus       491 -----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~--~~~  539 (683)
                                                   ..++.++|||||||++|+|++|++||.....     ......+...  ...
T Consensus       154 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~-----~~~~~~~~~~~~~~~  228 (282)
T cd06643         154 TRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELNP-----MRVLLKIAKSEPPTL  228 (282)
T ss_pred             cccccccccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccCH-----HHHHHHHhhcCCCCC
Confidence                                         1245689999999999999999999865322     1111122211  122


Q ss_pred             CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          540 IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       540 ~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ..|..++..+.+|+.+||+.|  |..||++.+++.
T Consensus       229 ~~~~~~~~~~~~li~~~l~~~--p~~Rp~~~~il~  261 (282)
T cd06643         229 AQPSRWSSEFKDFLKKCLEKN--VDARWTTTQLLQ  261 (282)
T ss_pred             CCccccCHHHHHHHHHHccCC--hhhCcCHHHHhc
Confidence            234457789999999999999  889999988764

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-34  Score=304.99  Aligned_cols=212  Identities=21%  Similarity=0.316  Sum_probs=178.5

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcC---CCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCc
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLN---NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNL  415 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~---~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL  415 (683)
                      ..+|+|+||.||+|.+  +++.||||++.   .....+++.+|+.+|+.++++||.++||.+..  .++++||||.||++
T Consensus        19 ~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey~~gGsv   98 (467)
T KOG0201|consen   19 ELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEYCGGGSV   98 (467)
T ss_pred             hhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHHhcCcch
Confidence            6789999999999998  68999999998   23345789999999999999999999998855  78999999999999


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-----
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-----  490 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-----  490 (683)
                      .+.|          .....+.+..+.-|+.+++.||.|||+   .+.+|||||+.|||+..+|.+||+|||.+..     
T Consensus        99 ~~lL----------~~~~~~~E~~i~~ilre~l~~l~ylH~---~~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~  165 (467)
T KOG0201|consen   99 LDLL----------KSGNILDEFEIAVILREVLKGLDYLHS---EKKIHRDIKAANILLSESGDVKLADFGVAGQLTNTV  165 (467)
T ss_pred             hhhh----------ccCCCCccceeeeehHHHHHHhhhhhh---cceecccccccceeEeccCcEEEEecceeeeeechh
Confidence            9999          455666888888899999999999999   6699999999999999999999999998732     


Q ss_pred             --------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC-CCCCCChhhHHHH
Q 005680          491 --------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG-NAGIWPLDLAEEL  549 (683)
Q Consensus       491 --------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~-~~~~~p~~~~~~l  549 (683)
                                          ..|+.|+||||||++.+||++|.||+.....      ..+.-++.. ..+.....+++.+
T Consensus       166 ~rr~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hP------mrvlflIpk~~PP~L~~~~S~~~  239 (467)
T KOG0201|consen  166 KRRKTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHP------MRVLFLIPKSAPPRLDGDFSPPF  239 (467)
T ss_pred             hccccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCc------ceEEEeccCCCCCccccccCHHH
Confidence                                4799999999999999999999999865322      111111111 2233334678899


Q ss_pred             HHHHHHhhhcCCCccccccHHHHHHH
Q 005680          550 AGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       550 ~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ++|+..||.+|  |..||++.++++.
T Consensus       240 kEFV~~CL~k~--P~~RpsA~~LLKh  263 (467)
T KOG0201|consen  240 KEFVEACLDKN--PEFRPSAKELLKH  263 (467)
T ss_pred             HHHHHHHhhcC--cccCcCHHHHhhh
Confidence            99999999999  8899999998863

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=8.1e-33  Score=305.32  Aligned_cols=230  Identities=21%  Similarity=0.338  Sum_probs=182.0

Q ss_pred             ccccccCCceEEEEEEEC-------CeeEEEEEcCCCCC---HHHHHHHHHHHHhcC-CCCccceeccccc--ceeEEEe
Q 005680          342 FRLKCAGDWTNVYRGRLN-------HASVAIKTLNNGLS---EEDFQAKVSFLTAVR-HPHLVAVMGCCSE--LKCIVFE  408 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~-------g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~-HpnIV~l~g~~~~--~~~LV~E  408 (683)
                      .+.+|+|+||.||+|.+.       +..||||++.....   ...+.+|+.+|.++. |||||+++|+|..  ..++|||
T Consensus        42 ~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~~~~~iv~E  121 (401)
T cd05107          42 GRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKGGPIYIITE  121 (401)
T ss_pred             hhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCCCcEEEEe
Confidence            367789999999999863       35799999974322   246889999999997 9999999999976  7899999


Q ss_pred             ecCCCCchhhhhhcccccc-------------------------------------------------------------
Q 005680          409 YMPNGNLRDKLFTSQRNYK-------------------------------------------------------------  427 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~-------------------------------------------------------------  427 (683)
                      |+++|+|.++|........                                                             
T Consensus       122 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (401)
T cd05107         122 YCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQDMKGTVKY  201 (401)
T ss_pred             ccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCccchhcchhhhhh
Confidence            9999999999965321000                                                             


Q ss_pred             ---------------------------cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcE
Q 005680          428 ---------------------------NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVA  480 (683)
Q Consensus       428 ---------------------------~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~  480 (683)
                                                 .......+++..++.|+.||+.||.|||+   .+|+||||||+|||++.++.+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrdlkp~NiLl~~~~~~  278 (401)
T cd05107         202 ADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLAS---KNCVHRDLAARNVLICEGKLV  278 (401)
T ss_pred             hhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcCcccCCcceEEEeCCCEE
Confidence                                       00122457889999999999999999999   779999999999999999999


Q ss_pred             EEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHH
Q 005680          481 KISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQ  532 (683)
Q Consensus       481 KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~  532 (683)
                      ||+|||+++.                           ..++.++|||||||++|||++ |..||......    ......
T Consensus       279 kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~----~~~~~~  354 (401)
T cd05107         279 KICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMN----EQFYNA  354 (401)
T ss_pred             EEEecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCch----HHHHHH
Confidence            9999999752                           124678999999999999998 88888643211    111112


Q ss_pred             HhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          533 VLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       533 ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      +........|..++..+.+|+.+||..+  |..||++.+|+..|+.+.
T Consensus       355 ~~~~~~~~~p~~~~~~l~~li~~cl~~~--P~~RPs~~ell~~L~~~~  400 (401)
T cd05107         355 IKRGYRMAKPAHASDEIYEIMQKCWEEK--FEIRPDFSQLVHLVGDLL  400 (401)
T ss_pred             HHcCCCCCCCCCCCHHHHHHHHHHcCCC--hhHCcCHHHHHHHHHHHh
Confidence            2223334456677899999999999999  889999999999998763

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=2.6e-33  Score=287.67  Aligned_cols=222  Identities=23%  Similarity=0.288  Sum_probs=173.5

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCC----HHHHHHHHHHHHhcCCCCccceeccc----ccceeE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLS----EEDFQAKVSFLTAVRHPHLVAVMGCC----SELKCI  405 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~----~~~~~~Ev~iL~~l~HpnIV~l~g~~----~~~~~L  405 (683)
                      ++|...++ |++|+||.||+|++  ++..||+|+++....    .-.-.+||.+|.+++|||||.+-.+.    .+..||
T Consensus        76 ~efe~lnr-I~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy~  154 (419)
T KOG0663|consen   76 EEFEKLNR-IEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIYI  154 (419)
T ss_pred             HHHHHHhh-cccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceeee
Confidence            34444444 46899999999998  689999999983332    23468999999999999999986554    448999


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecC
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGL  485 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DF  485 (683)
                      |||||+ -+|..++.         ....++...++..++.|++.||.|||.   ..|+||||||+|+|++..|.+||+||
T Consensus       155 VMe~~E-hDLksl~d---------~m~q~F~~~evK~L~~QlL~glk~lH~---~wilHRDLK~SNLLm~~~G~lKiaDF  221 (419)
T KOG0663|consen  155 VMEYVE-HDLKSLME---------TMKQPFLPGEVKTLMLQLLRGLKHLHD---NWILHRDLKTSNLLLSHKGILKIADF  221 (419)
T ss_pred             eHHHHH-hhHHHHHH---------hccCCCchHHHHHHHHHHHHHHHHHhh---ceeEecccchhheeeccCCcEEeccc
Confidence            999998 58999985         234689999999999999999999999   56999999999999999999999999


Q ss_pred             CCccc--------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhc-CC-
Q 005680          486 GLNIC--------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLD-GN-  537 (683)
Q Consensus       486 Gla~~--------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild-~~-  537 (683)
                      |+|+.                          ..|++.+|+||+|||+.||++++|-|.........+  .+...+- +. 
T Consensus       222 GLAR~ygsp~k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQl~--~If~llGtPte  299 (419)
T KOG0663|consen  222 GLAREYGSPLKPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQLD--KIFKLLGTPSE  299 (419)
T ss_pred             chhhhhcCCcccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCchHHHHH--HHHHHhCCCcc
Confidence            99975                          468999999999999999999999885432211111  0111110 00 


Q ss_pred             -------------------------CCCCChh-hHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          538 -------------------------AGIWPLD-LAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       538 -------------------------~~~~p~~-~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                                               ...++.. +++.-.+|+..+|.+|  |.+|.|+.+.++.
T Consensus       300 ~iwpg~~~lp~~k~~~f~~~pyn~lr~kF~~~~lse~g~~Lln~llt~d--P~kR~tA~~~L~h  361 (419)
T KOG0663|consen  300 AIWPGYSELPAVKKMTFSEHPYNNLRKKFGALSLSEQGFDLLNKLLTYD--PGKRITAEDGLKH  361 (419)
T ss_pred             ccCCCccccchhhccccCCCCchhhhhhccccccchhHHHHHHHHhccC--ccccccHHHhhcc
Confidence                                     1112222 5578899999999999  8899999987653

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=6.9e-33  Score=293.39  Aligned_cols=232  Identities=21%  Similarity=0.326  Sum_probs=183.6

Q ss_pred             cccccccCCceEEEEEEEC---------CeeEEEEEcCCCCC---HHHHHHHHHHHHhc-CCCCccceeccccc--ceeE
Q 005680          341 RFRLKCAGDWTNVYRGRLN---------HASVAIKTLNNGLS---EEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCI  405 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~~---------g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~L  405 (683)
                      ..+.+|+|+||.||++...         +..||+|.+.....   ...+..|+.++..+ +||||++++++|.+  ..|+
T Consensus        22 i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~l  101 (307)
T cd05098          22 LGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYV  101 (307)
T ss_pred             EeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEE
Confidence            3456789999999999862         24699999974322   34688899999999 79999999999865  7899


Q ss_pred             EEeecCCCCchhhhhhcccccc------cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYK------NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV  479 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~------~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~  479 (683)
                      ||||+++|+|.+++........      .......+++..++.++.||+.||.|||+   .+++||||||+|||++.++.
T Consensus       102 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~---~gi~H~dlkp~Nill~~~~~  178 (307)
T cd05098         102 IVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNV  178 (307)
T ss_pred             EEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHH---CCcccccccHHheEEcCCCc
Confidence            9999999999999965421000      00122468999999999999999999999   67999999999999999999


Q ss_pred             EEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHH
Q 005680          480 AKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLM  531 (683)
Q Consensus       480 ~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~  531 (683)
                      +||+|||++..                           ..++.++|||||||++|+|++ |.+||.....     .....
T Consensus       179 ~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~~-----~~~~~  253 (307)
T cd05098         179 MKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPV-----EELFK  253 (307)
T ss_pred             EEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCCH-----HHHHH
Confidence            99999998742                           235678999999999999998 8888864221     11111


Q ss_pred             HHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          532 QVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       532 ~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      .+........|..++..+.+|+.+||..+  |..|||+.+|++.|+.+...
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~li~~~l~~~--p~~Rps~~evl~~l~~~~~~  302 (307)
T cd05098         254 LLKEGHRMDKPSNCTNELYMMMRDCWHAV--PSQRPTFKQLVEDLDRILAL  302 (307)
T ss_pred             HHHcCCCCCCCCcCCHHHHHHHHHHcccC--hhhCcCHHHHHHHHHHHHHH
Confidence            22222334556677889999999999999  88999999999999998764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=7.9e-33  Score=298.47  Aligned_cols=231  Identities=23%  Similarity=0.357  Sum_probs=180.7

Q ss_pred             ccccccCCceEEEEEEE-------CCeeEEEEEcCCCCC---HHHHHHHHHHHHhc-CCCCccceeccccc---ceeEEE
Q 005680          342 FRLKCAGDWTNVYRGRL-------NHASVAIKTLNNGLS---EEDFQAKVSFLTAV-RHPHLVAVMGCCSE---LKCIVF  407 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~-------~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~---~~~LV~  407 (683)
                      .+.+|.|+||.||+|.+       +++.||||+++....   ...+.+|+.++.++ +|||||+++++|..   ..++||
T Consensus        12 ~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~~lv~   91 (343)
T cd05103          12 GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIV   91 (343)
T ss_pred             cccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCCceEEEE
Confidence            45678999999999974       467899999974322   34688999999999 68999999998854   578999


Q ss_pred             eecCCCCchhhhhhccccccc---------------------------------------------------------cc
Q 005680          408 EYMPNGNLRDKLFTSQRNYKN---------------------------------------------------------CS  430 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~---------------------------------------------------------~~  430 (683)
                      ||+++|+|.+++.........                                                         ..
T Consensus        92 ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (343)
T cd05103          92 EFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAEQEDL  171 (343)
T ss_pred             eccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhhhhhhhhh
Confidence            999999999998643210000                                                         00


Q ss_pred             ccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--------------------
Q 005680          431 RARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--------------------  490 (683)
Q Consensus       431 ~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--------------------  490 (683)
                      ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..                    
T Consensus       172 ~~~~~~~~~~~~~~~qi~~al~~lH~---~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~  248 (343)
T cd05103         172 YKKVLTLEDLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWM  248 (343)
T ss_pred             hhccCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCCCCcceE
Confidence            12357899999999999999999999   7799999999999999999999999998742                    


Q ss_pred             -------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCC
Q 005680          491 -------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQD  562 (683)
Q Consensus       491 -------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~  562 (683)
                             ..++.++|||||||++|+|++ |..||.....    .......+........|...++.+.+++..||+.|  
T Consensus       249 aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~~~--  322 (343)
T cd05103         249 APETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI----DEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGE--  322 (343)
T ss_pred             CcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccc----cHHHHHHHhccCCCCCCCCCCHHHHHHHHHHccCC--
Confidence                   235678999999999999997 8888854221    11112222233333444456778999999999999  


Q ss_pred             ccccccHHHHHHHHHHHHH
Q 005680          563 ANRDLRIAGVMKELDEVRK  581 (683)
Q Consensus       563 p~~RPs~~eVl~~L~~l~~  581 (683)
                      |..|||+.+|++.|+.+.+
T Consensus       323 p~~Rps~~eil~~l~~~~~  341 (343)
T cd05103         323 PSQRPTFSELVEHLGNLLQ  341 (343)
T ss_pred             hhhCcCHHHHHHHHHHHHh
Confidence            7899999999999998864

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=5.6e-33  Score=287.33  Aligned_cols=223  Identities=19%  Similarity=0.318  Sum_probs=177.4

Q ss_pred             HhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcC-CCCCHHHHHHHHHHHHhc-CCCCccceeccccc-------
Q 005680          333 LATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN-NGLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE-------  401 (683)
Q Consensus       333 ~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~-~~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~-------  401 (683)
                      .+++.|... +.+|.|+||.||+|..  +++.||+|.+. .......+..|+.++.++ +||||++++++|..       
T Consensus         3 ~~~~~y~~~-~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~   81 (272)
T cd06637           3 DPAGIFELV-ELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMD   81 (272)
T ss_pred             ChhhhhhHH-HheeecCCeEEEEEEEcCCCcEEEEEEEEcCCccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCC
Confidence            345566554 4568899999999998  67899999987 333456789999999999 79999999999843       


Q ss_pred             -ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcE
Q 005680          402 -LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVA  480 (683)
Q Consensus       402 -~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~  480 (683)
                       ..|+||||+++|+|.+++...        ....+++..+..++.|++.||.|||+   .+|+|+||||+||+++.++.+
T Consensus        82 ~~~~iv~e~~~~~~L~~~l~~~--------~~~~l~~~~~~~~~~qi~~~l~~LH~---~~ivh~dl~~~nili~~~~~~  150 (272)
T cd06637          82 DQLWLVMEFCGAGSVTDLIKNT--------KGNTLKEEWIAYICREILRGLSHLHQ---HKVIHRDIKGQNVLLTENAEV  150 (272)
T ss_pred             cEEEEEEEcCCCCcHHHHHHhc--------cCCCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCCHHHEEECCCCCE
Confidence             478999999999999999532        23568999999999999999999999   679999999999999999999


Q ss_pred             EEecCCCccc------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHH
Q 005680          481 KISGLGLNIC------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTL  530 (683)
Q Consensus       481 KL~DFGla~~------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~  530 (683)
                      ||+|||++..                              ..++.++|||||||++|+|++|.+||......     ...
T Consensus       151 ~l~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~~-----~~~  225 (272)
T cd06637         151 KLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPM-----RAL  225 (272)
T ss_pred             EEccCCCceecccccccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccCHH-----HHH
Confidence            9999999742                              12556899999999999999999998643221     111


Q ss_pred             HHHh-cCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          531 MQVL-DGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       531 ~~il-d~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .... .......+..++..+.+|+.+||..+  |..|||+.++++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--p~~Rpt~~~il~  268 (272)
T cd06637         226 FLIPRNPAPRLKSKKWSKKFQSFIESCLVKN--HSQRPTTEQLMK  268 (272)
T ss_pred             HHHhcCCCCCCCCCCcCHHHHHHHHHHcCCC--hhhCCCHHHHhh
Confidence            1111 11122223356788999999999999  889999999875

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=9.6e-33  Score=291.64  Aligned_cols=231  Identities=20%  Similarity=0.335  Sum_probs=183.0

Q ss_pred             ccccccCCceEEEEEEE---------CCeeEEEEEcCCCC---CHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEE
Q 005680          342 FRLKCAGDWTNVYRGRL---------NHASVAIKTLNNGL---SEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~---------~g~~VAvK~l~~~~---~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV  406 (683)
                      .+.+|.|+||.||+|..         ++..||+|.+....   ....+.+|+.++..+ +||||+++++++..  ..++|
T Consensus        20 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv   99 (304)
T cd05101          20 GKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVI   99 (304)
T ss_pred             cceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecCCceEEE
Confidence            35678999999999974         23579999987432   235688999999999 89999999999866  78999


Q ss_pred             EeecCCCCchhhhhhccccccc------ccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcE
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKN------CSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVA  480 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~------~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~  480 (683)
                      |||+++|+|.+++.........      ......+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+
T Consensus       100 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~---~givH~dlkp~Nili~~~~~~  176 (304)
T cd05101         100 VEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLAS---QKCIHRDLAARNVLVTENNVM  176 (304)
T ss_pred             EecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHH---CCeeecccccceEEEcCCCcE
Confidence            9999999999999654211000      0123468999999999999999999999   679999999999999999999


Q ss_pred             EEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHH
Q 005680          481 KISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQ  532 (683)
Q Consensus       481 KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~  532 (683)
                      ||+|||+++.                           ..++.++||||||+++|+|++ |..||.....     ......
T Consensus       177 kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~-----~~~~~~  251 (304)
T cd05101         177 KIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV-----EELFKL  251 (304)
T ss_pred             EECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCH-----HHHHHH
Confidence            9999998742                           235778999999999999998 7888754221     111222


Q ss_pred             HhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          533 VLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       533 ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      +........+..++..+.+|+.+||..+  |..|||+.+|++.|+++...
T Consensus       252 ~~~~~~~~~~~~~~~~~~~li~~cl~~~--p~~Rps~~e~l~~l~~~~~~  299 (304)
T cd05101         252 LKEGHRMDKPANCTNELYMMMRDCWHAI--PSHRPTFKQLVEDLDRILTL  299 (304)
T ss_pred             HHcCCcCCCCCCCCHHHHHHHHHHcccC--hhhCCCHHHHHHHHHHHHHh
Confidence            2233333445677889999999999999  88999999999999988653

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=2.7e-33  Score=305.52  Aligned_cols=213  Identities=19%  Similarity=0.230  Sum_probs=171.0

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      .+.+|.|+||.||++..  +++.||||++..     ......+.+|+.+|..++||||+++++++.+  ..||||||+++
T Consensus         6 ~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~   85 (376)
T cd05598           6 IKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPG   85 (376)
T ss_pred             EEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEEeCCCC
Confidence            46678999999999997  589999999862     1234568899999999999999999999865  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCcc---
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNI---  489 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~---  489 (683)
                      |+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+|.   
T Consensus        86 g~L~~~i~----------~~~~~~~~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~  152 (376)
T cd05598          86 GDMMSLLI----------RLGIFEEDLARFYIAELTCAIESVHK---MGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFR  152 (376)
T ss_pred             CcHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCCHHHEEECCCCCEEEEeCCCCcccc
Confidence            99999993          44568999999999999999999999   679999999999999999999999999852   


Q ss_pred             ----------------------------------------------------c-------------cCCCcccccccHHH
Q 005680          490 ----------------------------------------------------C-------------DQLNVRSDIRAFGT  504 (683)
Q Consensus       490 ----------------------------------------------------~-------------~~~t~ksDVwSlGv  504 (683)
                                                                          .             ..++.++|||||||
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGv  232 (376)
T cd05598         153 WTHDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGV  232 (376)
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccc
Confidence                                                                0             23677899999999


Q ss_pred             HHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC---CCCCCChhhHHHHHHHHHHhhhcCCCccccc---cHHHHHHH
Q 005680          505 LLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG---NAGIWPLDLAEELAGIALKCLSADQDANRDL---RIAGVMKE  575 (683)
Q Consensus       505 iL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~---~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RP---s~~eVl~~  575 (683)
                      ++|+|++|++||......     .....+...   ........+++.+.+++.+|+ .+  |.+|+   ++.+++..
T Consensus       233 ilyell~G~~Pf~~~~~~-----~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~l~-~~--p~~R~~~~t~~ell~h  301 (376)
T cd05598         233 ILYEMLVGQPPFLADTPA-----ETQLKVINWETTLHIPSQAKLSREASDLILRLC-CG--AEDRLGKNGADEIKAH  301 (376)
T ss_pred             eeeehhhCCCCCCCCCHH-----HHHHHHhccCccccCCCCCCCCHHHHHHHHHHh-cC--HhhcCCCCCHHHHhCC
Confidence            999999999999753221     111122211   111222356788999999976 47  77888   77777654

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=1.2e-32  Score=282.56  Aligned_cols=216  Identities=22%  Similarity=0.319  Sum_probs=176.5

Q ss_pred             ccccCCceEEEEEEEC---C--eeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecCCCC
Q 005680          344 LKCAGDWTNVYRGRLN---H--ASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMPNGN  414 (683)
Q Consensus       344 liG~G~fG~Vykg~~~---g--~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~ggs  414 (683)
                      ++|.|+||.||+|.+.   +  ..||||.+.....   ...+.+|+.++++++|||||++++++.+ ..++||||+++|+
T Consensus         2 ~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~~~   81 (257)
T cd05040           2 KLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLTHPLMMVTELAPLGS   81 (257)
T ss_pred             cCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcCCeEEEEEEecCCCc
Confidence            5689999999999872   2  3699999984433   4678999999999999999999998876 7789999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++...       .. ..+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.+||+|||++..    
T Consensus        82 L~~~l~~~-------~~-~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~  150 (257)
T cd05040          82 LLDRLRKD-------AL-GHFLISTLCDYAVQIANGMRYLES---KRFIHRDLAARNILLASDDKVKIGDFGLMRALPQN  150 (257)
T ss_pred             HHHHHHhc-------cc-ccCcHHHHHHHHHHHHHHHHHHHh---CCccccccCcccEEEecCCEEEecccccccccccc
Confidence            99999533       11 568999999999999999999999   6799999999999999999999999998642    


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHh-cCCCCCCChh
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVL-DGNAGIWPLD  544 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~il-d~~~~~~p~~  544 (683)
                                              ..++.++|||||||++|+|++ |.+||......     .....+. .......+..
T Consensus       151 ~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~  225 (257)
T cd05040         151 EDHYVMEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGS-----QILKKIDKEGERLERPEA  225 (257)
T ss_pred             ccceecccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCHH-----HHHHHHHhcCCcCCCCcc
Confidence                                    245678999999999999999 99998543221     1111111 2223334456


Q ss_pred             hHHHHHHHHHHhhhcCCCccccccHHHHHHHHH
Q 005680          545 LAEELAGIALKCLSADQDANRDLRIAGVMKELD  577 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~  577 (683)
                      .+..+.+++.+||+.+  |..|||+.+++..|.
T Consensus       226 ~~~~~~~li~~~l~~~--p~~Rps~~~~~~~l~  256 (257)
T cd05040         226 CPQDIYNVMLQCWAHN--PADRPTFAALREFLP  256 (257)
T ss_pred             CCHHHHHHHHHHCCCC--cccCCCHHHHHHHhc
Confidence            7789999999999999  889999999998774

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=6.7e-33  Score=290.83  Aligned_cols=219  Identities=21%  Similarity=0.313  Sum_probs=176.1

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCCC-----CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      .+++|+|+||.||++..  +++.||||.+....     ....+..|+.++.+++|+||+.+++.+.+  ..++||||++|
T Consensus         5 ~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~g   84 (285)
T cd05630           5 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNG   84 (285)
T ss_pred             eEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEecCC
Confidence            46789999999999998  67899999986221     12457789999999999999999998865  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++...        ....+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.++|+|||++..  
T Consensus        85 ~~L~~~l~~~--------~~~~l~~~~~~~~~~qi~~~l~~lH~---~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~  153 (285)
T cd05630          85 GDLKFHIYHM--------GEAGFEEGRAVFYAAEICCGLEDLHQ---ERIVYRDLKPENILLDDHGHIRISDLGLAVHVP  153 (285)
T ss_pred             CcHHHHHHHh--------cccCCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCCCHHHEEECCCCCEEEeeccceeecC
Confidence            9999988432        33468999999999999999999999   7799999999999999999999999998742  


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE  548 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~  548 (683)
                                            ..++.++|||||||++|+|++|++||......  .................+..+++.
T Consensus       154 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  231 (285)
T cd05630         154 EGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKK--IKREEVERLVKEVQEEYSEKFSPD  231 (285)
T ss_pred             CCccccCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCcc--chHHHHHhhhhhhhhhcCccCCHH
Confidence                                  23677899999999999999999999743211  111122222222223345567788


Q ss_pred             HHHHHHHhhhcCCCcccccc-----HHHHHHH
Q 005680          549 LAGIALKCLSADQDANRDLR-----IAGVMKE  575 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs-----~~eVl~~  575 (683)
                      +.+|+.+||+.|  |..|||     +.+++..
T Consensus       232 ~~~li~~~l~~~--p~~R~s~~~~~~~~~~~h  261 (285)
T cd05630         232 ARSLCKMLLCKD--PKERLGCQGGGAREVKEH  261 (285)
T ss_pred             HHHHHHHHhhcC--HHHccCCCCCchHHHHcC
Confidence            999999999999  889999     6777753

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=6.4e-33  Score=296.73  Aligned_cols=208  Identities=21%  Similarity=0.301  Sum_probs=170.7

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcC-CCCccceeccccc--ceeEEEeecC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVR-HPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~-HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      .+++|.|+||.||+|..  +|..||||++..     ......+..|..++..+. |++|+++++++.+  ..|+||||++
T Consensus         5 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~Ey~~   84 (323)
T cd05615           5 LMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVMEYVN   84 (323)
T ss_pred             EEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEEcCCC
Confidence            36789999999999998  588999999872     222356778999998886 5778888888755  7899999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      ||+|.+++.          ....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++. 
T Consensus        85 ~g~L~~~i~----------~~~~l~~~~~~~i~~qi~~al~~lH~---~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~  151 (323)
T cd05615          85 GGDLMYHIQ----------QVGKFKEPQAVFYAAEISVGLFFLHR---RGIIYRDLKLDNVMLDSEGHIKIADFGMCKEH  151 (323)
T ss_pred             CCcHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHeEECCCCCEEEecccccccc
Confidence            999999983          44579999999999999999999999   6799999999999999999999999998742 


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhH
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLA  546 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~  546 (683)
                                              ..++.++|||||||++|+|+||++||.....     ......+.. ....+|..++
T Consensus       152 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~-----~~~~~~i~~-~~~~~p~~~~  225 (323)
T cd05615         152 MVDGVTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDE-----DELFQSIME-HNVSYPKSLS  225 (323)
T ss_pred             CCCCccccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCH-----HHHHHHHHh-CCCCCCccCC
Confidence                                    2367899999999999999999999975322     122223332 2334566788


Q ss_pred             HHHHHHHHHhhhcCCCccccccHH
Q 005680          547 EELAGIALKCLSADQDANRDLRIA  570 (683)
Q Consensus       547 ~~l~~Li~~CL~~dP~p~~RPs~~  570 (683)
                      ..+.+++.+||+.+  |..|++..
T Consensus       226 ~~~~~li~~~l~~~--p~~R~~~~  247 (323)
T cd05615         226 KEAVSICKGLMTKH--PSKRLGCG  247 (323)
T ss_pred             HHHHHHHHHHcccC--HhhCCCCC
Confidence            89999999999999  78999854

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=1.2e-32  Score=291.49  Aligned_cols=225  Identities=21%  Similarity=0.343  Sum_probs=180.1

Q ss_pred             cCccccccccccCCceEEEEEEE-------CCeeEEEEEcCCCCC---HHHHHHHHHHHHhc-CCCCccceeccccc--c
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL-------NHASVAIKTLNNGLS---EEDFQAKVSFLTAV-RHPHLVAVMGCCSE--L  402 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~-------~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~  402 (683)
                      ++|... +.+|.|+||.||+|..       .+..||||.++....   .+.+.+|+.+++++ +||||++++++|..  .
T Consensus        35 ~~~~~~-~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~  113 (302)
T cd05055          35 NNLSFG-KTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGP  113 (302)
T ss_pred             HHeEEc-ceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCCc
Confidence            455443 5668999999999975       245799999873322   35688999999999 79999999999865  7


Q ss_pred             eeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEE
Q 005680          403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKI  482 (683)
Q Consensus       403 ~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL  482 (683)
                      .++||||+++|+|.+++...        ....+++..+..|+.+|+.||.|||+   .+|+|+||||+|||++.++.++|
T Consensus       114 ~~lv~e~~~~~~L~~~i~~~--------~~~~l~~~~~~~i~~~i~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~~l  182 (302)
T cd05055         114 ILVITEYCCYGDLLNFLRRK--------RESFLTLEDLLSFSYQVAKGMAFLAS---KNCIHRDLAARNVLLTHGKIVKI  182 (302)
T ss_pred             eEEEEEcCCCCcHHHHHHhC--------CCCCCCHHHHHHHHHHHHHHHHHHHH---CCeehhhhccceEEEcCCCeEEE
Confidence            89999999999999999532        22348999999999999999999999   67999999999999999999999


Q ss_pred             ecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHh
Q 005680          483 SGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVL  534 (683)
Q Consensus       483 ~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~il  534 (683)
                      +|||++..                           ..++.++|||||||++|+|++ |.+||.....     ...+...+
T Consensus       183 ~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~-----~~~~~~~~  257 (302)
T cd05055         183 CDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPV-----DSKFYKLI  257 (302)
T ss_pred             CCCcccccccCCCceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCc-----hHHHHHHH
Confidence            99998752                           124678999999999999998 9999864221     11112222


Q ss_pred             c-CCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          535 D-GNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       535 d-~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                      . ......+...+..+.+++.+||..+  |..|||+.+|+..|+.+
T Consensus       258 ~~~~~~~~~~~~~~~~~~li~~cl~~~--p~~Rpt~~ell~~l~~~  301 (302)
T cd05055         258 KEGYRMAQPEHAPAEIYDIMKTCWDAD--PLKRPTFKQIVQLIGKQ  301 (302)
T ss_pred             HcCCcCCCCCCCCHHHHHHHHHHcCCC--chhCcCHHHHHHHHHhh
Confidence            2 2223334456789999999999999  78999999999999864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=100.00  E-value=1.6e-32  Score=283.00  Aligned_cols=219  Identities=25%  Similarity=0.409  Sum_probs=179.1

Q ss_pred             ccccccCCceEEEEEEE-CCeeEEEEEcCCCC-CHHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecCCCCchhh
Q 005680          342 FRLKCAGDWTNVYRGRL-NHASVAIKTLNNGL-SEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMPNGNLRDK  418 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~-~g~~VAvK~l~~~~-~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~ggsL~~~  418 (683)
                      .+.+|+|+||.||+|.+ .+..||+|.+.... ....+.+|+.++++++|+||+++++++.+ ..++||||+++|+|.++
T Consensus        11 ~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~v~e~~~~~~L~~~   90 (260)
T cd05073          11 EKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFMAKGSLLDF   90 (260)
T ss_pred             EeEecCccceEEEEEEecCCccEEEEecCCChhHHHHHHHHHHHHHhcCCCCcceEEEEEcCCCeEEEEEeCCCCcHHHH
Confidence            35678999999999987 56789999987432 34678999999999999999999998876 77999999999999999


Q ss_pred             hhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--------
Q 005680          419 LFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--------  490 (683)
Q Consensus       419 L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--------  490 (683)
                      +...        ....+++..+..++.+++.||.|||+   .+++|+||||+||+++.++.+||+|||++..        
T Consensus        91 ~~~~--------~~~~~~~~~~~~~~~~l~~aL~~lH~---~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~  159 (260)
T cd05073          91 LKSD--------EGSKQPLPKLIDFSAQIAEGMAFIEQ---RNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTA  159 (260)
T ss_pred             HHhC--------CccccCHHHHHHHHHHHHHHHHHHHh---CCccccccCcceEEEcCCCcEEECCCcceeeccCCCccc
Confidence            9532        23568899999999999999999999   6799999999999999999999999997642        


Q ss_pred             ------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHH
Q 005680          491 ------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAG  551 (683)
Q Consensus       491 ------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~  551 (683)
                                        ..++.++|||||||++|+++| |.+||.....     ......+........+...+..+.+
T Consensus       160 ~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  234 (260)
T cd05073         160 REGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSN-----PEVIRALERGYRMPRPENCPEELYN  234 (260)
T ss_pred             ccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCCH-----HHHHHHHhCCCCCCCcccCCHHHHH
Confidence                              234678999999999999999 9999864322     1111122222233344567789999


Q ss_pred             HHHHhhhcCCCccccccHHHHHHHHHH
Q 005680          552 IALKCLSADQDANRDLRIAGVMKELDE  578 (683)
Q Consensus       552 Li~~CL~~dP~p~~RPs~~eVl~~L~~  578 (683)
                      ++.+||..+  |..||++.+++..|+.
T Consensus       235 ~i~~~l~~~--p~~Rp~~~~l~~~L~~  259 (260)
T cd05073         235 IMMRCWKNR--PEERPTFEYIQSVLDD  259 (260)
T ss_pred             HHHHHcccC--cccCcCHHHHHHHHhc
Confidence            999999999  8899999999998874

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=100.00  E-value=1.5e-32  Score=284.87  Aligned_cols=216  Identities=20%  Similarity=0.307  Sum_probs=168.3

Q ss_pred             ccccCCceEEEEEEE-CC---eeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          344 LKCAGDWTNVYRGRL-NH---ASVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       344 liG~G~fG~Vykg~~-~g---~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      .+|+|+||.||+|.. ++   ..+++|.+....   ....+.+|+.+++.++||||++++++|.+  ..|+||||+++|+
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   81 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELGD   81 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCCc
Confidence            468999999999976 32   356777766322   34679999999999999999999999976  7899999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++....      .....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..    
T Consensus        82 L~~~l~~~~------~~~~~~~~~~~~~~~~~i~~al~~lH~---~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~  152 (268)
T cd05086          82 LKSYLSQEQ------WHRRNSQLLLLQRMACEIAAGVTHMHK---HNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKE  152 (268)
T ss_pred             HHHHHHhhh------cccccccHHHHHHHHHHHHHHHHHHHH---CCeeccCCccceEEEcCCccEEecccccccccCcc
Confidence            999996431      123456778888999999999999999   6799999999999999999999999998631    


Q ss_pred             ------------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcC---
Q 005680          491 ------------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDG---  536 (683)
Q Consensus       491 ------------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~---  536 (683)
                                                    ..++.++|||||||++|+|++ |.+||......     ..+..++..   
T Consensus       153 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~-----~~~~~~~~~~~~  227 (268)
T cd05086         153 DYIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLSDR-----EVLNHVIKDQQV  227 (268)
T ss_pred             hhhhcccCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCHH-----HHHHHHHhhccc
Confidence                                          012568999999999999997 56787543221     111111111   


Q ss_pred             --CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHH
Q 005680          537 --NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       537 --~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                        ..+..+...++.+.+++..|| .+  |..||++.+|++.|
T Consensus       228 ~~~~~~~~~~~~~~~~~l~~~c~-~~--P~~Rp~~~~i~~~l  266 (268)
T cd05086         228 KLFKPQLELPYSERWYEVLQFCW-LS--PEKRATAEEVHRLL  266 (268)
T ss_pred             ccCCCccCCCCcHHHHHHHHHHh-hC--cccCCCHHHHHHHh
Confidence              123334457788999999999 67  77999999998876

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=2.8e-33  Score=299.57  Aligned_cols=212  Identities=17%  Similarity=0.210  Sum_probs=172.5

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      +.+|.|+||.||++..  +|..||||+++..     .....+..|+.++..++||||+++++++.+  ..||||||+++|
T Consensus         7 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~   86 (330)
T cd05601           7 SLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVMEYQPGG   86 (330)
T ss_pred             EEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEECCCCCC
Confidence            5668999999999998  6899999998732     133568889999999999999999998865  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++..         ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..   
T Consensus        87 ~L~~~l~~---------~~~~l~~~~~~~~~~qi~~aL~~lH~---~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~  154 (330)
T cd05601          87 DLLSLLNR---------YEDQFDEDMAQFYLAELVLAIHSVHQ---MGYVHRDIKPENVLIDRTGHIKLADFGSAARLTA  154 (330)
T ss_pred             CHHHHHHH---------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCeEcccCchHheEECCCCCEEeccCCCCeECCC
Confidence            99999942         23579999999999999999999999   7799999999999999999999999998742   


Q ss_pred             -----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC-CCCC
Q 005680          491 -----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG-NAGI  540 (683)
Q Consensus       491 -----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~-~~~~  540 (683)
                                                   ..++.++|||||||++|+|++|+.||.....     ...+..++.. ....
T Consensus       155 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~-----~~~~~~i~~~~~~~~  229 (330)
T cd05601         155 NKMVNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTS-----AKTYNNIMNFQRFLK  229 (330)
T ss_pred             CCceeeecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCCH-----HHHHHHHHcCCCccC
Confidence                                         1245789999999999999999999964322     1122233322 1112


Q ss_pred             C--ChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          541 W--PLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       541 ~--p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +  ...++..+.+|+..||. +  |.+|||+.+++.
T Consensus       230 ~~~~~~~~~~~~~li~~ll~-~--p~~R~t~~~l~~  262 (330)
T cd05601         230 FPEDPKVSSDFLDLIQSLLC-G--QKERLGYEGLCC  262 (330)
T ss_pred             CCCCCCCCHHHHHHHHHHcc-C--hhhCCCHHHHhC
Confidence            2  23578899999999997 8  789999988764

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=1.7e-32  Score=291.49  Aligned_cols=231  Identities=22%  Similarity=0.352  Sum_probs=183.8

Q ss_pred             ccccccCCceEEEEEEE---------CCeeEEEEEcCCCCC---HHHHHHHHHHHHhc-CCCCccceeccccc--ceeEE
Q 005680          342 FRLKCAGDWTNVYRGRL---------NHASVAIKTLNNGLS---EEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~---------~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV  406 (683)
                      .+.+|+|+||.||+|..         ....||+|.+.....   ...+..|+.++.++ +||||++++++|.+  ..++|
T Consensus        17 ~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv   96 (314)
T cd05099          17 GKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQEGPLYVI   96 (314)
T ss_pred             eeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccCCceEEE
Confidence            35678999999999975         235799999874332   34688999999999 69999999999865  68999


Q ss_pred             EeecCCCCchhhhhhcccccc------cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcE
Q 005680          407 FEYMPNGNLRDKLFTSQRNYK------NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVA  480 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~------~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~  480 (683)
                      |||+++|+|.+++........      .......+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+
T Consensus        97 ~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~---~gi~H~dlkp~Nill~~~~~~  173 (314)
T cd05099          97 VEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLES---RRCIHRDLAARNVLVTEDNVM  173 (314)
T ss_pred             EecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHH---CCeeeccccceeEEEcCCCcE
Confidence            999999999999965321000      00123468999999999999999999999   679999999999999999999


Q ss_pred             EEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHH
Q 005680          481 KISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQ  532 (683)
Q Consensus       481 KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~  532 (683)
                      ||+|||+++.                           ..++.++|||||||++|+|++ |..||.....     ...+..
T Consensus       174 kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~-----~~~~~~  248 (314)
T cd05099         174 KIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPV-----EELFKL  248 (314)
T ss_pred             EEccccccccccccccccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCCH-----HHHHHH
Confidence            9999999852                           235678999999999999999 8888864321     112222


Q ss_pred             HhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          533 VLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       533 ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      +........+..++..+.+++.+||..+  |..|||+.+++..|..+...
T Consensus       249 ~~~~~~~~~~~~~~~~l~~li~~cl~~~--p~~Rps~~~ll~~l~~~~~~  296 (314)
T cd05099         249 LREGHRMDKPSNCTHELYMLMRECWHAV--PTQRPTFKQLVEALDKVLAA  296 (314)
T ss_pred             HHcCCCCCCCCCCCHHHHHHHHHHcCCC--cccCcCHHHHHHHHHHHHHH
Confidence            2333334456677889999999999999  78999999999999998754

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=9.5e-33  Score=287.28  Aligned_cols=213  Identities=20%  Similarity=0.294  Sum_probs=175.6

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      .+.+|.|+||.||+|.+  ++..||+|.+....   ....+.+|+.++++++||||+++++++.+  ..++||||+++++
T Consensus         9 ~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   88 (277)
T cd06642           9 LERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYLGGGS   88 (277)
T ss_pred             HHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEccCCCc
Confidence            35678999999999987  57899999987332   23568899999999999999999999866  7899999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++.           ...+++..+..++.||+.||.|||+   .+++|+||+|+||+++.++.++|+|||++..    
T Consensus        89 L~~~~~-----------~~~~~~~~~~~~~~~i~~~l~~lH~---~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~  154 (277)
T cd06642          89 ALDLLK-----------PGPLEETYIATILREILKGLDYLHS---ERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDT  154 (277)
T ss_pred             HHHHhh-----------cCCCCHHHHHHHHHHHHHHHHHHhc---CCeeccCCChheEEEeCCCCEEEccccccccccCc
Confidence            999882           2468999999999999999999999   6799999999999999999999999998742    


Q ss_pred             ---------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHH
Q 005680          491 ---------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEEL  549 (683)
Q Consensus       491 ---------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l  549 (683)
                                           ..++.++|||||||++|+|+||++||.....     ......+........+..++..+
T Consensus       155 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  229 (277)
T cd06642         155 QIKRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHP-----MRVLFLIPKNSPPTLEGQYSKPF  229 (277)
T ss_pred             chhhhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccch-----hhHHhhhhcCCCCCCCcccCHHH
Confidence                                 2356789999999999999999999864221     11111222223333444677889


Q ss_pred             HHHHHHhhhcCCCccccccHHHHHHH
Q 005680          550 AGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       550 ~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .+++.+||..+  |..||++.+++..
T Consensus       230 ~~li~~~l~~~--p~~Rp~~~~il~~  253 (277)
T cd06642         230 KEFVEACLNKD--PRFRPTAKELLKH  253 (277)
T ss_pred             HHHHHHHccCC--cccCcCHHHHHHh
Confidence            99999999999  7799999999974

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=1.7e-32  Score=291.27  Aligned_cols=172  Identities=17%  Similarity=0.262  Sum_probs=141.5

Q ss_pred             cccccccCCceEEEEEEE----CCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccccc----ceeEEEeecCC
Q 005680          341 RFRLKCAGDWTNVYRGRL----NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE----LKCIVFEYMPN  412 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~----~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----~~~LV~Ey~~g  412 (683)
                      ..+.+|+|+||.||+|..    ++..||+|.+........+.+|+.+|++++|||||++++++.+    ..|+||||+. 
T Consensus         5 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~-   83 (317)
T cd07868           5 EGCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE-   83 (317)
T ss_pred             cccccccCCCeEEEEEEEccCCCCceEEEEEECCCCCcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccC-
Confidence            345678999999999986    3578999999755555678899999999999999999998743    5789999996 


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccc----cCCCcEEEecCCCc
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL----DRNLVAKISGLGLN  488 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILl----d~~~~~KL~DFGla  488 (683)
                      ++|.+++........ ......+++..+..|+.||+.||.|||+   .+|+||||||+|||+    +.++.+||+|||++
T Consensus        84 ~~l~~~~~~~~~~~~-~~~~~~l~~~~~~~i~~qi~~al~~LH~---~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a  159 (317)
T cd07868          84 HDLWHIIKFHRASKA-NKKPVQLPRGMVKSLLYQILDGIHYLHA---NWVLHRDLKPANILVMGEGPERGRVKIADMGFA  159 (317)
T ss_pred             CCHHHHHHhcccccc-cCCcccCCHHHHHHHHHHHHHHHHHHHh---CCEEcCCCCHHHEEEecCCCCcCcEEEeecCce
Confidence            588888753321100 0123468999999999999999999999   679999999999999    45689999999987


Q ss_pred             cc-----------------------------cCCCcccccccHHHHHHHHhhCCCCch
Q 005680          489 IC-----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAG  517 (683)
Q Consensus       489 ~~-----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~  517 (683)
                      +.                             ..++.++|||||||++|+|++|++||.
T Consensus       160 ~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~  217 (317)
T cd07868         160 RLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFH  217 (317)
T ss_pred             eccCCCCccccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCcc
Confidence            42                             136778999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=100.00  E-value=1.2e-32  Score=288.68  Aligned_cols=213  Identities=20%  Similarity=0.285  Sum_probs=171.7

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      .+++|.|+||+||+|.+  +++.||+|.+...     .....+.+|+.++..++|+||+.+++++.+  ..++||||+++
T Consensus         5 ~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~   84 (285)
T cd05632           5 YRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTIMNG   84 (285)
T ss_pred             EEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEeccC
Confidence            36688999999999998  5889999998632     123457889999999999999999988755  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++...        ....+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||++..  
T Consensus        85 ~~L~~~~~~~--------~~~~~~~~~~~~~~~ql~~~l~~lH~---~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~  153 (285)
T cd05632          85 GDLKFHIYNM--------GNPGFEEERALFYAAEILCGLEDLHR---ENTVYRDLKPENILLDDYGHIRISDLGLAVKIP  153 (285)
T ss_pred             ccHHHHHHHh--------cCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCCHHHEEECCCCCEEEecCCcceecC
Confidence            9999888532        23469999999999999999999999   6799999999999999999999999998732  


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE  548 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~  548 (683)
                                            ..++.++|+|||||++|+|++|..||.......  ....+...+......++..++..
T Consensus       154 ~~~~~~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  231 (285)
T cd05632         154 EGESIRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKV--KREEVDRRVLETEEVYSAKFSEE  231 (285)
T ss_pred             CCCcccCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHH--HHHHHHHhhhccccccCccCCHH
Confidence                                  236788999999999999999999996432210  11111122222223445567888


Q ss_pred             HHHHHHHhhhcCCCccccccH
Q 005680          549 LAGIALKCLSADQDANRDLRI  569 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs~  569 (683)
                      +.+|+..||+.|  |..||++
T Consensus       232 ~~~li~~~l~~~--P~~R~~~  250 (285)
T cd05632         232 AKSICKMLLTKD--PKQRLGC  250 (285)
T ss_pred             HHHHHHHHccCC--HhHcCCC
Confidence            999999999999  7899993

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=4.7e-33  Score=290.34  Aligned_cols=212  Identities=25%  Similarity=0.377  Sum_probs=167.1

Q ss_pred             ccccCCceEEEEEEEC--------------------------CeeEEEEEcCCCCC--HHHHHHHHHHHHhcCCCCccce
Q 005680          344 LKCAGDWTNVYRGRLN--------------------------HASVAIKTLNNGLS--EEDFQAKVSFLTAVRHPHLVAV  395 (683)
Q Consensus       344 liG~G~fG~Vykg~~~--------------------------g~~VAvK~l~~~~~--~~~~~~Ev~iL~~l~HpnIV~l  395 (683)
                      .+|+|+||.||+|.+.                          ...||+|++.....  ...+.+|+.+++.++||||+++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~   81 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV   81 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence            4789999999999751                          13589999863222  3468889999999999999999


Q ss_pred             eccccc--ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccc
Q 005680          396 MGCCSE--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSIL  473 (683)
Q Consensus       396 ~g~~~~--~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NIL  473 (683)
                      +|+|.+  ..++||||+++|+|..++..         ....+++..+..++.||+.||.|||+   ++|+||||||+|||
T Consensus        82 ~~~~~~~~~~~lv~ey~~~g~L~~~l~~---------~~~~~~~~~~~~i~~qi~~~l~~lH~---~~iiH~dlkp~Nil  149 (274)
T cd05076          82 HGVCVRGSENIMVEEFVEHGPLDVCLRK---------EKGRVPVAWKITVAQQLASALSYLED---KNLVHGNVCAKNIL  149 (274)
T ss_pred             EEEEEeCCceEEEEecCCCCcHHHHHHh---------cCCCCCHHHHHHHHHHHHHHHHHHHc---CCccCCCCCcccEE
Confidence            999966  78999999999999999842         23568899999999999999999999   77999999999999


Q ss_pred             ccCCC-------cEEEecCCCccc----------------------cCCCcccccccHHHHHHHHh-hCCCCchhhHHHh
Q 005680          474 LDRNL-------VAKISGLGLNIC----------------------DQLNVRSDIRAFGTLLLHLL-TGRNWAGLVEKAM  523 (683)
Q Consensus       474 ld~~~-------~~KL~DFGla~~----------------------~~~t~ksDVwSlGviL~eLl-tG~~Pf~~~~~~~  523 (683)
                      ++..+       .+||+|||++..                      ..++.++|||||||++|+|+ +|.+||...... 
T Consensus       150 l~~~~~~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~-  228 (274)
T cd05076         150 LARLGLAEGTSPFIKLSDPGVSFTALSREERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPS-  228 (274)
T ss_pred             EeccCcccCccceeeecCCccccccccccccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccChH-
Confidence            97643       489999997632                      23678899999999999995 689988643211 


Q ss_pred             hhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHH
Q 005680          524 ALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       524 ~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                           ........ ....|...++.+.+++.+||+.+  |..|||+.+|++.|
T Consensus       229 -----~~~~~~~~-~~~~~~~~~~~~~~li~~cl~~~--p~~Rps~~~il~~L  273 (274)
T cd05076         229 -----EKERFYEK-KHRLPEPSCKELATLISQCLTYE--PTQRPSFRTILRDL  273 (274)
T ss_pred             -----HHHHHHHh-ccCCCCCCChHHHHHHHHHcccC--hhhCcCHHHHHHhh
Confidence                 11111111 11223334567999999999999  77999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.9e-32  Score=285.35  Aligned_cols=221  Identities=21%  Similarity=0.338  Sum_probs=182.4

Q ss_pred             cccccCCceEEEEEEE--CC----eeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecCC
Q 005680          343 RLKCAGDWTNVYRGRL--NH----ASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMPN  412 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g----~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~g  412 (683)
                      +.+|.|+||.||+|.+  +|    ..||+|.+.....   ...+.+|+.++.+++||||++++++|.. ..++||||+++
T Consensus        13 ~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~   92 (279)
T cd05057          13 KVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLSSQVQLITQLMPL   92 (279)
T ss_pred             ceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCceEEEEecCCC
Confidence            5678999999999987  33    3699999874432   3578899999999999999999999876 78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++..         ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++.  
T Consensus        93 g~L~~~l~~---------~~~~~~~~~~~~~~~qi~~~l~~LH~---~~i~H~di~p~nil~~~~~~~kL~dfg~~~~~~  160 (279)
T cd05057          93 GCLLDYVRN---------HKDNIGSQYLLNWCVQIAKGMSYLEE---KRLVHRDLAARNVLVKTPQHVKITDFGLAKLLD  160 (279)
T ss_pred             CcHHHHHHh---------ccCCCCHHHHHHHHHHHHHHHHHHHh---CCEEecccCcceEEEcCCCeEEECCCccccccc
Confidence            999999952         23458999999999999999999999   6799999999999999999999999998742  


Q ss_pred             -------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChh
Q 005680          491 -------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLD  544 (683)
Q Consensus       491 -------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~  544 (683)
                                               ..++.++|||||||++|++++ |++||.....     ......+........|..
T Consensus       161 ~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~  235 (279)
T cd05057         161 VDEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPA-----VEIPDLLEKGERLPQPPI  235 (279)
T ss_pred             CcccceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCCH-----HHHHHHHhCCCCCCCCCC
Confidence                                     235678999999999999999 9999865322     111222333333444556


Q ss_pred             hHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          545 LAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      ++..+.+++.+||..+  |..||++.+++..|..+.+.
T Consensus       236 ~~~~~~~~~~~~l~~~--p~~Rp~~~~l~~~l~~~~~~  271 (279)
T cd05057         236 CTIDVYMVLVKCWMID--AESRPTFKELINEFSKMARD  271 (279)
T ss_pred             CCHHHHHHHHHHcCCC--hhhCCCHHHHHHHHHHHHhC
Confidence            7788999999999999  78999999999999988653

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=4e-33  Score=287.95  Aligned_cols=215  Identities=19%  Similarity=0.217  Sum_probs=172.4

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC--CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCc
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG--LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNL  415 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~--~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL  415 (683)
                      .+.+|.|+||.||+|..  +|..||+|++...  .....+.+|+.++.+++||||+++++++..  ..++||||+++|+|
T Consensus        14 ~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e~~~~~~L   93 (267)
T cd06646          14 IQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICMEYCGGGSL   93 (267)
T ss_pred             hheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEeCCCCCcH
Confidence            35668999999999997  6889999998732  234567899999999999999999999855  78899999999999


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-----
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-----  490 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-----  490 (683)
                      .+++.          ....+++..+..++.|++.||.|||+   .+|+||||+|+||+++.++.+||+|||++..     
T Consensus        94 ~~~~~----------~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~  160 (267)
T cd06646          94 QDIYH----------VTGPLSELQIAYVCRETLQGLAYLHS---KGKMHRDIKGANILLTDNGDVKLADFGVAAKITATI  160 (267)
T ss_pred             HHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEECCCCCEEECcCccceeecccc
Confidence            99983          34568999999999999999999999   6799999999999999999999999998742     


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhc----CCCCCCCh
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLD----GNAGIWPL  543 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild----~~~~~~p~  543 (683)
                                             ..++.++|||||||++|+|++|.+||......     .....+..    ......+.
T Consensus       161 ~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  235 (267)
T cd06646         161 AKRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHPM-----RALFLMSKSNFQPPKLKDKT  235 (267)
T ss_pred             cccCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccchh-----hhheeeecCCCCCCCCcccc
Confidence                                   11456899999999999999999998532211     00001100    11111123


Q ss_pred             hhHHHHHHHHHHhhhcCCCccccccHHHHHHHH
Q 005680          544 DLAEELAGIALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       544 ~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                      .++..+.+++.+||..+  |..|||+.++++.|
T Consensus       236 ~~~~~~~~li~~~l~~~--P~~Rp~~~~il~~l  266 (267)
T cd06646         236 KWSSTFHNFVKISLTKN--PKKRPTAERLLTHL  266 (267)
T ss_pred             ccCHHHHHHHHHHhhCC--hhhCcCHHHHhcCC
Confidence            45788999999999999  88999999988643

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=100.00  E-value=2e-32  Score=280.66  Aligned_cols=215  Identities=24%  Similarity=0.438  Sum_probs=177.1

Q ss_pred             cccccCCceEEEEEEE-CCeeEEEEEcCC-CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCchhh
Q 005680          343 RLKCAGDWTNVYRGRL-NHASVAIKTLNN-GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRDK  418 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~-~g~~VAvK~l~~-~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~~  418 (683)
                      +.+|.|+||.||+|.+ ++..+|+|.+.. ......+.+|+.++++++||||+++++++.+  ..++||||+++|+|.++
T Consensus        10 ~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~   89 (256)
T cd05112          10 QEIGSGQFGLVWLGYWLEKRKVAIKTIREGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFMEHGCLSDY   89 (256)
T ss_pred             eeecCcccceEEEEEEeCCCeEEEEECCCCCCCHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcCCCCcHHHH
Confidence            5678999999999988 478999999873 3445789999999999999999999999865  78999999999999999


Q ss_pred             hhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--------
Q 005680          419 LFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--------  490 (683)
Q Consensus       419 L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--------  490 (683)
                      +..         ....+++..+..++.+++.||.|||+   .+++|+||||+||+++.++.+||+|||++..        
T Consensus        90 ~~~---------~~~~~~~~~~~~~~~~l~~~l~~lH~---~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~  157 (256)
T cd05112          90 LRA---------QRGKFSQETLLGMCLDVCEGMAYLES---SNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTS  157 (256)
T ss_pred             HHh---------CccCCCHHHHHHHHHHHHHHHHHHHH---CCccccccccceEEEcCCCeEEECCCcceeecccCcccc
Confidence            842         23468999999999999999999999   6699999999999999999999999998642        


Q ss_pred             ------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHH
Q 005680          491 ------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAG  551 (683)
Q Consensus       491 ------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~  551 (683)
                                        ..++.++||||||+++|+|++ |.+||.....     ......+........|...+..+.+
T Consensus       158 ~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  232 (256)
T cd05112         158 STGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSN-----SEVVETINAGFRLYKPRLASQSVYE  232 (256)
T ss_pred             cCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCH-----HHHHHHHhCCCCCCCCCCCCHHHHH
Confidence                              235668999999999999998 9999864221     1112222222222334456789999


Q ss_pred             HHHHhhhcCCCccccccHHHHHHHH
Q 005680          552 IALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       552 Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                      |+.+||+.+  |..|||+.+|++.|
T Consensus       233 l~~~~l~~~--p~~Rp~~~~~l~~l  255 (256)
T cd05112         233 LMQHCWKER--PEDRPSFSLLLHQL  255 (256)
T ss_pred             HHHHHcccC--hhhCCCHHHHHHhh
Confidence            999999999  77999999999876

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=2.8e-33  Score=302.87  Aligned_cols=217  Identities=18%  Similarity=0.264  Sum_probs=187.2

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcCC----CCCHHHHHHHHHHHHhcCCCCccceeccccc--c-eeEEEeecC
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLNN----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--L-KCIVFEYMP  411 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~-~~LV~Ey~~  411 (683)
                      ..+.+|+|+||.++.++.  ++..|++|.+.-    ........+|+.++++++|||||.+.+.|.+  . .+|||+||+
T Consensus         8 ~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Ivm~Y~e   87 (426)
T KOG0589|consen    8 VLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIVMEYCE   87 (426)
T ss_pred             hhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEEEeecC
Confidence            346789999999998887  578999999972    2233467899999999999999999999966  4 899999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      ||+|.+.|...        +...++++.+..++.|++.|+.|||+   ..|+|||||+.||+++.++.+||+|||+|+. 
T Consensus        88 Gg~l~~~i~~~--------k~~~f~E~~i~~~~~Q~~~av~ylH~---~~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l  156 (426)
T KOG0589|consen   88 GGDLAQLIKEQ--------KGVLFPEERILKWFVQILLAVNYLHE---NRVLHRDLKCANIFLTKDKKVKLGDFGLAKIL  156 (426)
T ss_pred             CCCHHHHHHHH--------hhccccHHHHHHHHHHHHHHHHHHHh---hhhhcccchhhhhhccccCceeecchhhhhhc
Confidence            99999999644        35679999999999999999999998   6799999999999999999999999999965 


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhH
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLA  546 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~  546 (683)
                                              ..|+.|+|||||||++|||++-+++|...+.     ......+......+.|...+
T Consensus       157 ~~~~~~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~m-----~~Li~ki~~~~~~Plp~~ys  231 (426)
T KOG0589|consen  157 NPEDSLASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASNM-----SELILKINRGLYSPLPSMYS  231 (426)
T ss_pred             CCchhhhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccch-----HHHHHHHhhccCCCCCcccc
Confidence                                    3689999999999999999999999975332     23344555555667788899


Q ss_pred             HHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          547 EELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       547 ~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .++..||..||..+  |+.||++.+++..
T Consensus       232 ~el~~lv~~~l~~~--P~~RPsa~~LL~~  258 (426)
T KOG0589|consen  232 SELRSLVKSMLRKN--PEHRPSALELLRR  258 (426)
T ss_pred             HHHHHHHHHHhhcC--CccCCCHHHHhhC
Confidence            99999999999999  8899999999986

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=1e-32  Score=284.86  Aligned_cols=221  Identities=23%  Similarity=0.403  Sum_probs=178.3

Q ss_pred             ccccCCceEEEEEEECC--------eeEEEEEcCCC---CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeec
Q 005680          344 LKCAGDWTNVYRGRLNH--------ASVAIKTLNNG---LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYM  410 (683)
Q Consensus       344 liG~G~fG~Vykg~~~g--------~~VAvK~l~~~---~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~  410 (683)
                      ++|.|+||.||+|...+        ..||||.+...   .....+.+|+.+++.++||||++++++|.+  ..++||||+
T Consensus         2 ~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~   81 (269)
T cd05044           2 FLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMELM   81 (269)
T ss_pred             ccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEecc
Confidence            57899999999998732        57999988633   234678899999999999999999999865  789999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCC-----cEEEecC
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL-----VAKISGL  485 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~-----~~KL~DF  485 (683)
                      ++|+|.+++.......   .....+++..+..++.||+.||.|||+   .+++|+||||+|||++.++     .++|+||
T Consensus        82 ~~~~L~~~l~~~~~~~---~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~~~~~~~l~df  155 (269)
T cd05044          82 EGGDLLSYLRDARVER---FGPPLLTLKELLDICLDVAKGCVYLEQ---MHFIHRDLAARNCLVSEKGYDADRVVKIGDF  155 (269)
T ss_pred             CCCcHHHHHHHhhhcc---cCCccccHHHHHHHHHHHHHHHHHHHh---CCcccCCCChheEEEecCCCCCCcceEECCc
Confidence            9999999996432100   123458999999999999999999999   6799999999999999877     8999999


Q ss_pred             CCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCC
Q 005680          486 GLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGN  537 (683)
Q Consensus       486 Gla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~  537 (683)
                      |++..                           ..++.++|||||||++|+|+| |..||.....     ......+....
T Consensus       156 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~-----~~~~~~~~~~~  230 (269)
T cd05044         156 GLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNN-----QEVLQHVTAGG  230 (269)
T ss_pred             ccccccccccccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCH-----HHHHHHHhcCC
Confidence            98742                           245778999999999999998 9999864221     11122222233


Q ss_pred             CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHH
Q 005680          538 AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELD  577 (683)
Q Consensus       538 ~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~  577 (683)
                      ....+..++..+.+++.+||..+  |..||++.++++.|+
T Consensus       231 ~~~~~~~~~~~~~~li~~~l~~~--p~~Rp~~~~i~~~l~  268 (269)
T cd05044         231 RLQKPENCPDKIYQLMTNCWAQD--PSERPTFDRIQEILQ  268 (269)
T ss_pred             ccCCcccchHHHHHHHHHHcCCC--cccCCCHHHHHHHHh
Confidence            34455678899999999999999  789999999999885

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.9e-34  Score=296.69  Aligned_cols=226  Identities=22%  Similarity=0.318  Sum_probs=175.1

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccccc-------ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-------LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-------~~~LV~Ey~~g  412 (683)
                      .+++|.|+||.||+|..  ++..||||+.-.+..  --.+|+.+|+.+.|||||++.-+|..       ...||||||| 
T Consensus        29 ~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r--~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlVleymP-  105 (364)
T KOG0658|consen   29 VRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR--YKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLVLEYMP-  105 (364)
T ss_pred             eEEEeecccceEEEEEEcCCCceeEEEEecCCCC--cCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHHHHhch-
Confidence            47889999999999998  578999999863322  23579999999999999999988732       3468999998 


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC-CcEEEecCCCccc-
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN-LVAKISGLGLNIC-  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~-~~~KL~DFGla~~-  490 (683)
                      -+|.+++....      .....++.-.+.-++.||.+||.|||+   .+|+||||||.|+|+|.+ |.+||||||.|+. 
T Consensus       106 ~tL~~~~r~~~------~~~~~mp~~~iKLYt~Qlfrgl~yLh~---~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L  176 (364)
T KOG0658|consen  106 ETLYRVIRHYT------RANQRMPLLEIKLYTYQLFRGLAYLHS---HGICHRDIKPQNLLVDPDTGVLKICDFGSAKVL  176 (364)
T ss_pred             HHHHHHHHHHh------hcCCCCceeeeHHHHHHHHHHHHHHHh---cCcccCCCChheEEEcCCCCeEEeccCCcceee
Confidence            69999996432      245678888888999999999999999   679999999999999976 9999999999865 


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhh----------hHHHHHHHhc-
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMAL----------DQTTLMQVLD-  535 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~----------~~~~~~~ild-  535 (683)
                                              ..|+.+.||||.|||+.||+-|+|-|...+.....          ....+..+.. 
T Consensus       177 ~~~epniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQL~eIik~lG~Pt~e~I~~mn~~  256 (364)
T KOG0658|consen  177 VKGEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQLVEIIKVLGTPTREDIKSMNPN  256 (364)
T ss_pred             ccCCCceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHHHHHHHHHHHhCCCCHHHHhhcCcc
Confidence                                    46899999999999999999999988642221000          0011111100 


Q ss_pred             ------C--CCCC----CChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH--HHHHHH
Q 005680          536 ------G--NAGI----WPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE--LDEVRK  581 (683)
Q Consensus       536 ------~--~~~~----~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~--L~~l~~  581 (683)
                            +  ....    +....++++.+|+.++|.++  |..|.++.+++..  ++.++.
T Consensus       257 y~~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~--P~~R~~~~~~l~h~fFdelr~  314 (364)
T KOG0658|consen  257 YTEFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYS--PSKRLSALEALAHPFFDELRD  314 (364)
T ss_pred             cccccCcccccccceeecccCCCHHHHHHHHHHhccC--hhhcCCHHHHhcchhhHHhhC
Confidence                  0  0111    33457889999999999999  8899999888853  555543

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-33  Score=277.37  Aligned_cols=228  Identities=19%  Similarity=0.250  Sum_probs=186.6

Q ss_pred             cccccccccCCceEEEEEEE--CCeeEEEEEcC--CCCCHHHHHHHHHHHHhcCCCCccceeccccc-------ceeEEE
Q 005680          339 SERFRLKCAGDWTNVYRGRL--NHASVAIKTLN--NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-------LKCIVF  407 (683)
Q Consensus       339 ~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~--~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-------~~~LV~  407 (683)
                      +...+.+|.|||+.||.+..  ++..+|+|++.  ...+.+..++|++..++++||||+++++++..       ..||++
T Consensus        23 yri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~yll~  102 (302)
T KOG2345|consen   23 YRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEAYLLL  102 (302)
T ss_pred             EEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeEEEEe
Confidence            34456778999999999985  78999999987  33456788999999999999999999998732       579999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCC
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL  487 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGl  487 (683)
                      .|...|||.+.+....      .....+++.+.+.|+.+|++||.+||... .+++||||||+|||+.+.+.++|.|||.
T Consensus       103 Pyy~~Gsl~d~i~~~k------~kg~~~sE~~iL~if~gic~gL~~lH~~~-~~yAH~DiKP~NILls~~~~~vl~D~GS  175 (302)
T KOG2345|consen  103 PYYKRGSLLDEIERLK------IKGNFVSEAQILWIFLGICRGLEALHEKE-PPYAHRDIKPANILLSDSGLPVLMDLGS  175 (302)
T ss_pred             ehhccccHHHHHHHHh------hcCCccCHHHHHHHHHHHHHHHHHHhccC-CcccccCCCcceeEecCCCceEEEeccC
Confidence            9999999999996552      34557999999999999999999999977 4799999999999999999999999998


Q ss_pred             ccc-------------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHH
Q 005680          488 NIC-------------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTL  530 (683)
Q Consensus       488 a~~-------------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~  530 (683)
                      +..                                     ...+.++|||||||+||.|+.|..||...-..   .....
T Consensus       176 ~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~---GgSla  252 (302)
T KOG2345|consen  176 ATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQ---GGSLA  252 (302)
T ss_pred             ccccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhc---CCeEE
Confidence            743                                     24688999999999999999999999753221   01111


Q ss_pred             HHHhcCCCCCCC--hhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          531 MQVLDGNAGIWP--LDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       531 ~~ild~~~~~~p--~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                      ..+..+ ...+|  ..+++.+.+||..||+.|  |..||++.+++..++.+
T Consensus       253 LAv~n~-q~s~P~~~~yse~l~~lik~mlqvd--P~qRP~i~~ll~~~d~L  300 (302)
T KOG2345|consen  253 LAVQNA-QISIPNSSRYSEALHQLIKSMLQVD--PNQRPTIPELLSKLDDL  300 (302)
T ss_pred             Eeeecc-ccccCCCCCccHHHHHHHHHHhcCC--cccCCCHHHHHHHHHhh
Confidence            112221 11222  237899999999999999  88999999999988765

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=100.00  E-value=1.8e-32  Score=288.42  Aligned_cols=231  Identities=19%  Similarity=0.314  Sum_probs=176.4

Q ss_pred             ccccccCCceEEEEEEEC------------------CeeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceecccc
Q 005680          342 FRLKCAGDWTNVYRGRLN------------------HASVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCS  400 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~------------------g~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~  400 (683)
                      .+.+|+|+||.||++...                  +..||+|++....   ....+.+|+.+++.++||||+++++++.
T Consensus        10 ~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~   89 (296)
T cd05095          10 KEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRLLAVCI   89 (296)
T ss_pred             eeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEe
Confidence            346789999999998542                  3469999997432   2357899999999999999999999986


Q ss_pred             c--ceeEEEeecCCCCchhhhhhcccccc-cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC
Q 005680          401 E--LKCIVFEYMPNGNLRDKLFTSQRNYK-NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN  477 (683)
Q Consensus       401 ~--~~~LV~Ey~~ggsL~~~L~~~~~~~~-~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~  477 (683)
                      +  ..++||||+++|+|.+++........ .......+++..+..++.||+.||.|||+   .+|+||||||+|||++.+
T Consensus        90 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~---~~i~H~dlkp~Nili~~~  166 (296)
T cd05095          90 TSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSS---LNFVHRDLATRNCLVGKN  166 (296)
T ss_pred             cCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHH---CCeecccCChheEEEcCC
Confidence            5  78999999999999999965421100 01123458899999999999999999999   679999999999999999


Q ss_pred             CcEEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh--CCCCchhhHHHhhhh--
Q 005680          478 LVAKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT--GRNWAGLVEKAMALD--  526 (683)
Q Consensus       478 ~~~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt--G~~Pf~~~~~~~~~~--  526 (683)
                      +.++|+|||++..                           +.++.++|||||||++|||++  |..||..........  
T Consensus       167 ~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~~~~~~~~~  246 (296)
T cd05095         167 YTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLSDEQVIENT  246 (296)
T ss_pred             CCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccccChHHHHHHH
Confidence            9999999998742                           235678999999999999998  667875432211010  


Q ss_pred             HHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHH
Q 005680          527 QTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELD  577 (683)
Q Consensus       527 ~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~  577 (683)
                      .............+.+..++..+.+|+.+||+.|  |..||++.+|++.|+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~--p~~Rp~~~~i~~~l~  295 (296)
T cd05095         247 GEFFRDQGRQVYLPKPALCPDSLYKLMLSCWRRN--AKERPSFQEIHATLL  295 (296)
T ss_pred             HHHHhhccccccCCCCCCCCHHHHHHHHHHcCCC--cccCCCHHHHHHHHh
Confidence            0001111111112234457789999999999999  889999999999885

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=100.00  E-value=1.9e-32  Score=286.68  Aligned_cols=231  Identities=25%  Similarity=0.414  Sum_probs=182.6

Q ss_pred             cCccccccccccCCceEEEEEEE-------CCeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ce
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL-------NHASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LK  403 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~-------~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~  403 (683)
                      ++|.... .+|.|+||.||+|..       ++..||+|.+.....   ...+.+|+.++++++||||++++++|.+  ..
T Consensus         5 ~~~~~~~-~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~~   83 (288)
T cd05050           5 NNIEYVR-DIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKPM   83 (288)
T ss_pred             Hhceecc-cccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCcc
Confidence            4555543 457899999999986       357899999874332   3568899999999999999999999876  78


Q ss_pred             eEEEeecCCCCchhhhhhcccccc------------cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCc
Q 005680          404 CIVFEYMPNGNLRDKLFTSQRNYK------------NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSS  471 (683)
Q Consensus       404 ~LV~Ey~~ggsL~~~L~~~~~~~~------------~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~N  471 (683)
                      ++||||+++|+|.+++........            .......+++..++.++.||+.||.|||+   .+++||||||+|
T Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~---~~i~H~dl~p~n  160 (288)
T cd05050          84 CLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSE---RKFVHRDLATRN  160 (288)
T ss_pred             EEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHh---CCeecccccHhh
Confidence            999999999999999964321000            00122458999999999999999999999   679999999999


Q ss_pred             ccccCCCcEEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHh
Q 005680          472 ILLDRNLVAKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAM  523 (683)
Q Consensus       472 ILld~~~~~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~  523 (683)
                      ||++.++.++|+|||++..                           ..++.++|||||||++|+|++ |..||.....  
T Consensus       161 il~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~~--  238 (288)
T cd05050         161 CLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAH--  238 (288)
T ss_pred             eEecCCCceEECccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCH--
Confidence            9999999999999998642                           235678999999999999998 8878743211  


Q ss_pred             hhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHH
Q 005680          524 ALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELD  577 (683)
Q Consensus       524 ~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~  577 (683)
                         ......+.+......+..++..+.+|+.+||+.|  |..|||+.+++..|+
T Consensus       239 ---~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~--p~~Rpt~~el~~~l~  287 (288)
T cd05050         239 ---EEVIYYVRDGNVLSCPDNCPLELYNLMRLCWSKL--PSDRPSFASINRILQ  287 (288)
T ss_pred             ---HHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcccC--cccCCCHHHHHHHhh
Confidence               1222333334344445667889999999999999  779999999999886

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=100.00  E-value=1.2e-32  Score=282.39  Aligned_cols=216  Identities=19%  Similarity=0.297  Sum_probs=178.5

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC---CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG---LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~---~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      .+.+|.|+||.||++..  ++..||+|.++..   ...+.+..|+.+++.++||||+++++++.+  ..|+||||+++|+
T Consensus         5 ~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   84 (255)
T cd08219           5 LRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYCDGGD   84 (255)
T ss_pred             EEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeCCCCc
Confidence            35678999999999998  6889999998622   234678899999999999999999999865  7899999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++...        ....+++..+..++.||+.||.|||+   .+|+|+||||+||+++.++.++|+|||++..    
T Consensus        85 l~~~~~~~--------~~~~~~~~~~~~~~~~i~~al~~lH~---~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~  153 (255)
T cd08219          85 LMQKIKLQ--------RGKLFPEDTILQWFVQMCLGVQHIHE---KRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSP  153 (255)
T ss_pred             HHHHHHhc--------cCCCCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCcceEEECCCCcEEEcccCcceeeccc
Confidence            99988432        33468899999999999999999999   6799999999999999999999999998742    


Q ss_pred             ---------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHH
Q 005680          491 ---------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEEL  549 (683)
Q Consensus       491 ---------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l  549 (683)
                                           ..++.++||||||+++|+|++|.+||.....     ......+........|..++..+
T Consensus       154 ~~~~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  228 (255)
T cd08219         154 GAYACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANSW-----KNLILKVCQGSYKPLPSHYSYEL  228 (255)
T ss_pred             ccccccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCCH-----HHHHHHHhcCCCCCCCcccCHHH
Confidence                                 2356789999999999999999999974322     11222333333444556678889


Q ss_pred             HHHHHHhhhcCCCccccccHHHHHHH
Q 005680          550 AGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       550 ~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .+|+.+||+.|  |..|||+.+++..
T Consensus       229 ~~li~~~l~~~--P~~Rp~~~~il~~  252 (255)
T cd08219         229 RSLIKQMFKRN--PRSRPSATTILSR  252 (255)
T ss_pred             HHHHHHHHhCC--cccCCCHHHHhhc
Confidence            99999999999  7899999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.3e-32  Score=289.42  Aligned_cols=230  Identities=18%  Similarity=0.323  Sum_probs=174.6

Q ss_pred             cccccCCceEEEEEEECC----------------eeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--
Q 005680          343 RLKCAGDWTNVYRGRLNH----------------ASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--  401 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g----------------~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--  401 (683)
                      +.+|+|+||.||+|...+                ..||||.++....   ...|.+|+.++.+++||||+++++++..  
T Consensus        11 ~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~   90 (295)
T cd05097          11 EKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLGVCVSDD   90 (295)
T ss_pred             hccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEcCCC
Confidence            557899999999987622                3599999874332   3468899999999999999999999865  


Q ss_pred             ceeEEEeecCCCCchhhhhhcccc--cccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc
Q 005680          402 LKCIVFEYMPNGNLRDKLFTSQRN--YKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV  479 (683)
Q Consensus       402 ~~~LV~Ey~~ggsL~~~L~~~~~~--~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~  479 (683)
                      ..++||||+++++|.+++......  .........+++..++.++.|++.||.|||+   .+++||||||+|||++.++.
T Consensus        91 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~---~~i~H~dlkp~Nill~~~~~  167 (295)
T cd05097          91 PLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLAS---LNFVHRDLATRNCLVGNHYT  167 (295)
T ss_pred             ccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHh---cCeeccccChhhEEEcCCCc
Confidence            789999999999999998543100  0000122357899999999999999999999   67999999999999999999


Q ss_pred             EEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh--CCCCchhhHHHhhhhH--H
Q 005680          480 AKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT--GRNWAGLVEKAMALDQ--T  528 (683)
Q Consensus       480 ~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt--G~~Pf~~~~~~~~~~~--~  528 (683)
                      +||+|||++..                           ..++.++|||||||++|+|++  |..||...........  .
T Consensus       168 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~~~~~~~~~~  247 (295)
T cd05097         168 IKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSDEQVIENTGE  247 (295)
T ss_pred             EEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccChHHHHHHHHH
Confidence            99999998742                           235779999999999999998  5677764322110000  0


Q ss_pred             HHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHH
Q 005680          529 TLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELD  577 (683)
Q Consensus       529 ~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~  577 (683)
                      .............+...++.+.+|+.+||+.|  |..|||+.+|++.|+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~--p~~RPs~~~i~~~l~  294 (295)
T cd05097         248 FFRNQGRQIYLSQTPLCPSPVFKLMMRCWSRD--IKDRPTFNKIHHFLR  294 (295)
T ss_pred             hhhhccccccCCCCCCCCHHHHHHHHHHcCCC--chhCcCHHHHHHHHh
Confidence            00000111112234456789999999999999  789999999998875

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.1e-32  Score=278.39  Aligned_cols=215  Identities=25%  Similarity=0.406  Sum_probs=177.2

Q ss_pred             ccccCCceEEEEEEEC-CeeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCchh
Q 005680          344 LKCAGDWTNVYRGRLN-HASVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRD  417 (683)
Q Consensus       344 liG~G~fG~Vykg~~~-g~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~  417 (683)
                      ++|.|+||.||++.+. ++.||+|.+....   ....+.+|+.++++++||||+++++++.+  ..++||||+++++|.+
T Consensus         2 ~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~   81 (251)
T cd05041           2 KIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLLT   81 (251)
T ss_pred             ccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcHHH
Confidence            5789999999999984 8999999987332   23578999999999999999999999866  7899999999999999


Q ss_pred             hhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-------
Q 005680          418 KLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-------  490 (683)
Q Consensus       418 ~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-------  490 (683)
                      ++..         ....+++..+..++.+++.||.|||+   .+++||||||+|||++.++.+||+|||++..       
T Consensus        82 ~l~~---------~~~~~~~~~~~~~~~~~~~~l~~lH~---~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~  149 (251)
T cd05041          82 FLRK---------KKNRLTVKKLLQMSLDAAAGMEYLES---KNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYT  149 (251)
T ss_pred             HHHh---------cCCCCCHHHHHHHHHHHHHHHHHHHh---CCEehhhcCcceEEEcCCCcEEEeeccccccccCCcce
Confidence            9842         23468899999999999999999999   6699999999999999999999999998742       


Q ss_pred             --------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHH
Q 005680          491 --------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEEL  549 (683)
Q Consensus       491 --------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l  549 (683)
                                          ..++.++|||||||++|+|+| |..||......     .....+........|..++..+
T Consensus       150 ~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  224 (251)
T cd05041         150 VSDGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSNQ-----QTRERIESGYRMPAPQLCPEEI  224 (251)
T ss_pred             eccccCcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCCHH-----HHHHHHhcCCCCCCCccCCHHH
Confidence                                235678999999999999999 88888543211     1111122222333455678899


Q ss_pred             HHHHHHhhhcCCCccccccHHHHHHHHH
Q 005680          550 AGIALKCLSADQDANRDLRIAGVMKELD  577 (683)
Q Consensus       550 ~~Li~~CL~~dP~p~~RPs~~eVl~~L~  577 (683)
                      .+++.+||..+  |..|||+.+|+..|+
T Consensus       225 ~~li~~~l~~~--p~~Rp~~~ell~~l~  250 (251)
T cd05041         225 YRLMLQCWAYD--PENRPSFSEIYNELQ  250 (251)
T ss_pred             HHHHHHHhccC--hhhCcCHHHHHHHhh
Confidence            99999999999  779999999999875

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=1.5e-32  Score=284.54  Aligned_cols=212  Identities=25%  Similarity=0.392  Sum_probs=167.0

Q ss_pred             ccccCCceEEEEEEEC--------------CeeEEEEEcCCCC--CHHHHHHHHHHHHhcCCCCccceeccccc--ceeE
Q 005680          344 LKCAGDWTNVYRGRLN--------------HASVAIKTLNNGL--SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCI  405 (683)
Q Consensus       344 liG~G~fG~Vykg~~~--------------g~~VAvK~l~~~~--~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~L  405 (683)
                      .+|.|+||.||+|.+.              ...||+|.+....  ....+..|+.++..++|||||++++++.+  ..++
T Consensus         2 ~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~l   81 (262)
T cd05077           2 HLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVENIM   81 (262)
T ss_pred             ccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCEE
Confidence            4689999999999852              2359999986322  23468889999999999999999999866  6899


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc------
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV------  479 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~------  479 (683)
                      ||||+++|+|..++..         ....+++..++.|+.||+.||.|||+   ++|+||||||+|||++.++.      
T Consensus        82 v~e~~~~~~l~~~~~~---------~~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~Nill~~~~~~~~~~~  149 (262)
T cd05077          82 VEEFVEFGPLDLFMHR---------KSDVLTTPWKFKVAKQLASALSYLED---KDLVHGNVCTKNILLAREGIDGECGP  149 (262)
T ss_pred             EEecccCCCHHHHHHh---------cCCCCCHHHHHHHHHHHHHHHHHhhh---CCeECCCCCcccEEEecCCccCCCCc
Confidence            9999999999988842         23568999999999999999999999   77999999999999987664      


Q ss_pred             -EEEecCCCccc----------------------cCCCcccccccHHHHHHHHh-hCCCCchhhHHHhhhhHHHHHHHhc
Q 005680          480 -AKISGLGLNIC----------------------DQLNVRSDIRAFGTLLLHLL-TGRNWAGLVEKAMALDQTTLMQVLD  535 (683)
Q Consensus       480 -~KL~DFGla~~----------------------~~~t~ksDVwSlGviL~eLl-tG~~Pf~~~~~~~~~~~~~~~~ild  535 (683)
                       ++++|||++..                      ..++.++|||||||++|+|+ +|..||......   .   ......
T Consensus       150 ~~~l~d~g~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~---~---~~~~~~  223 (262)
T cd05077         150 FIKLSDPGIPITVLSRQECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTLA---E---KERFYE  223 (262)
T ss_pred             eeEeCCCCCCccccCcccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcchh---H---HHHHHh
Confidence             89999998742                      23677899999999999998 588887542211   0   111111


Q ss_pred             CCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHH
Q 005680          536 GNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       536 ~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                      .. .......+..+.+|+.+||+.|  |.+||++.+++..|
T Consensus       224 ~~-~~~~~~~~~~~~~li~~cl~~d--p~~Rp~~~~il~~~  261 (262)
T cd05077         224 GQ-CMLVTPSCKELADLMTHCMNYD--PNQRPFFRAIMRDI  261 (262)
T ss_pred             cC-ccCCCCChHHHHHHHHHHcCCC--hhhCcCHHHHHHhc
Confidence            11 1122234578999999999999  88999999998876

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=1.6e-32  Score=286.61  Aligned_cols=221  Identities=21%  Similarity=0.292  Sum_probs=179.8

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      .+.+|.|+||.||++..  +|..||+|.+.....   ...+.+|+.++.+++||||+++++++..  ..++||||+++++
T Consensus         6 ~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~   85 (286)
T cd06622           6 LDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEYMDAGS   85 (286)
T ss_pred             hhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEeecCCCC
Confidence            35678999999999998  589999999873322   3578899999999999999999998865  7899999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |..++...       .....+++..+..++.+|+.||.|||+.  .+|+|+||||+||+++.++.+||+|||++..    
T Consensus        86 l~~~~~~~-------~~~~~~~~~~~~~~~~~i~~~l~~LH~~--~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~  156 (286)
T cd06622          86 LDKLYAGG-------VATEGIPEDVLRRITYAVVKGLKFLKEE--HNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVAS  156 (286)
T ss_pred             HHHHHHhc-------cccCCCCHHHHHHHHHHHHHHHHHHHhc--CCEeeCCCCHHHEEECCCCCEEEeecCCcccccCC
Confidence            99988432       1234789999999999999999999962  3699999999999999999999999998742    


Q ss_pred             -------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhh
Q 005680          491 -------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDL  545 (683)
Q Consensus       491 -------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~  545 (683)
                                               ..++.++|||||||++|+|++|+.||......  .....+..+........|..+
T Consensus       157 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~--~~~~~~~~~~~~~~~~~~~~~  234 (286)
T cd06622         157 LAKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYA--NIFAQLSAIVDGDPPTLPSGY  234 (286)
T ss_pred             ccccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcchh--hHHHHHHHHhhcCCCCCCccc
Confidence                                     01367899999999999999999998642221  111223344444455566678


Q ss_pred             HHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          546 AEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       546 ~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      +.++.+++.+||+.+  |..||++.+++..
T Consensus       235 ~~~~~~li~~~l~~~--p~~Rp~~~~l~~~  262 (286)
T cd06622         235 SDDAQDFVAKCLNKI--PNRRPTYAQLLEH  262 (286)
T ss_pred             CHHHHHHHHHHcccC--cccCCCHHHHhcC
Confidence            899999999999999  7799999988864

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=1.3e-32  Score=281.96  Aligned_cols=212  Identities=25%  Similarity=0.415  Sum_probs=169.6

Q ss_pred             ccccCCceEEEEEEEC--C----------eeEEEEEcCCCCC-HHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEee
Q 005680          344 LKCAGDWTNVYRGRLN--H----------ASVAIKTLNNGLS-EEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEY  409 (683)
Q Consensus       344 liG~G~fG~Vykg~~~--g----------~~VAvK~l~~~~~-~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey  409 (683)
                      .+|+|+||.||+|.+.  +          ..|++|.+..... ...+.+|+.+++.++||||++++|+|.. ..++||||
T Consensus         2 ~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~   81 (259)
T cd05037           2 HLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQLSHKHLVKLYGVCVRDENIMVEEY   81 (259)
T ss_pred             cccccccceEEEEEEeccCCccccCCccceeeeeeccccchhhHHHHHHHHHHHHcCCCcchhheeeEEecCCcEEEEEc
Confidence            5689999999999983  3          2488898763332 6789999999999999999999998864 77999999


Q ss_pred             cCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCC-------cEEE
Q 005680          410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL-------VAKI  482 (683)
Q Consensus       410 ~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~-------~~KL  482 (683)
                      +++|+|.+++...         ...+++..+..++.||+.||.|||+   .+|+||||||+|||++.++       .+||
T Consensus        82 ~~~~~L~~~l~~~---------~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dlkp~Nill~~~~~~~~~~~~~kl  149 (259)
T cd05037          82 VKFGPLDVFLHRE---------KNNVSLHWKLDVAKQLASALHYLED---KKLVHGNVCGKNILVARYGLNEGYVPFIKL  149 (259)
T ss_pred             CCCCcHHHHHHhh---------ccCCCHHHHHHHHHHHHHHHHHHhh---CCeecccCccceEEEecCccccCCceeEEe
Confidence            9999999999532         2278999999999999999999999   7799999999999999887       8999


Q ss_pred             ecCCCccc---------------------c--CCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCC
Q 005680          483 SGLGLNIC---------------------D--QLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNA  538 (683)
Q Consensus       483 ~DFGla~~---------------------~--~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~  538 (683)
                      +|||++..                     .  .++.++|||||||++|+|++ |..||......     .......... 
T Consensus       150 ~Dfg~a~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~~~-----~~~~~~~~~~-  223 (259)
T cd05037         150 SDPGIPITVLSREERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSSS-----EKERFYQDQH-  223 (259)
T ss_pred             CCCCcccccccccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCCch-----hHHHHHhcCC-
Confidence            99998753                     1  46778999999999999999 57777543210     1111111111 


Q ss_pred             CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHH
Q 005680          539 GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       539 ~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                       ..+......+.+++.+||..+  |..|||+.+|++.|
T Consensus       224 -~~~~~~~~~~~~li~~~l~~~--p~~Rpt~~~il~~l  258 (259)
T cd05037         224 -RLPMPDCAELANLINQCWTYD--PTKRPSFRAILRDL  258 (259)
T ss_pred             -CCCCCCchHHHHHHHHHhccC--hhhCCCHHHHHHhc
Confidence             122222378999999999999  88999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=100.00  E-value=2.7e-32  Score=282.39  Aligned_cols=223  Identities=20%  Similarity=0.396  Sum_probs=178.3

Q ss_pred             cccccCCceEEEEEEE-----CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc--------ceeE
Q 005680          343 RLKCAGDWTNVYRGRL-----NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--------LKCI  405 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~-----~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--------~~~L  405 (683)
                      +++|+|+||.||+|.+     ++..||||++....    ..+.+.+|+.+++.++||||+++++++..        ..++
T Consensus         5 ~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~   84 (273)
T cd05074           5 RMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLPIPMV   84 (273)
T ss_pred             hcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCcccceEE
Confidence            5678999999999986     35889999987322    23568899999999999999999998743        2478


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecC
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGL  485 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DF  485 (683)
                      +++|+++|+|.+++......    .....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+||
T Consensus        85 ~~~~~~~~~l~~~~~~~~~~----~~~~~l~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~nili~~~~~~kl~df  157 (273)
T cd05074          85 ILPFMKHGDLHTFLLMSRIG----EEPFTLPLQTLVRFMIDIASGMEYLSS---KNFIHRDLAARNCMLNENMTVCVADF  157 (273)
T ss_pred             EEecCCCCcHHHHHHHhccc----CCCCCCCHHHHHHHHHHHHHHHHHHHh---CCEeecccchhhEEEcCCCCEEECcc
Confidence            99999999999888533110    123458999999999999999999999   67999999999999999999999999


Q ss_pred             CCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCC
Q 005680          486 GLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGN  537 (683)
Q Consensus       486 Gla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~  537 (683)
                      |+++.                           ..++.++|||||||++|+|++ |.+||.....     ......+....
T Consensus       158 g~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~-----~~~~~~~~~~~  232 (273)
T cd05074         158 GLSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVEN-----SEIYNYLIKGN  232 (273)
T ss_pred             cccccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCH-----HHHHHHHHcCC
Confidence            98752                           124678999999999999999 8899864221     11222233333


Q ss_pred             CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          538 AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       538 ~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                      ....+...+..+.+++.+||+.+  |..|||+.+++..|+.+
T Consensus       233 ~~~~~~~~~~~~~~l~~~~l~~~--p~~Rps~~~~~~~l~~~  272 (273)
T cd05074         233 RLKQPPDCLEDVYELMCQCWSPE--PKCRPSFQHLRDQLELI  272 (273)
T ss_pred             cCCCCCCCCHHHHHHHHHHcCCC--hhhCcCHHHHHHHHHhh
Confidence            33445567789999999999999  77999999999999875

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=2.4e-32  Score=281.78  Aligned_cols=212  Identities=22%  Similarity=0.348  Sum_probs=175.8

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCCCC-----------HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEE
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNGLS-----------EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVF  407 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~-----------~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~  407 (683)
                      .++|.|+||.||+|..  ++..||+|.+.....           .+.+.+|+.++++++||||+++++++.+  ..++||
T Consensus         6 ~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   85 (267)
T cd06628           6 ALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADHLNIFL   85 (267)
T ss_pred             ceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCccEEEE
Confidence            4678999999999987  578999998862211           1457889999999999999999999865  788999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCC
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL  487 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGl  487 (683)
                      ||+++++|.+++.          ....+++..+..++.|++.||.|||+   .+++||||+|+||+++.++.+||+|||+
T Consensus        86 e~~~~~~L~~~l~----------~~~~l~~~~~~~~~~~l~~~l~~lH~---~~ivH~di~p~nil~~~~~~~~l~dfg~  152 (267)
T cd06628          86 EYVPGGSVAALLN----------NYGAFEETLVRNFVRQILKGLNYLHN---RGIIHRDIKGANILVDNKGGIKISDFGI  152 (267)
T ss_pred             EecCCCCHHHHHH----------hccCccHHHHHHHHHHHHHHHHHHHh---cCcccccCCHHHEEEcCCCCEEecccCC
Confidence            9999999999993          44568999999999999999999999   6799999999999999999999999997


Q ss_pred             ccc-------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC
Q 005680          488 NIC-------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG  536 (683)
Q Consensus       488 a~~-------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~  536 (683)
                      ++.                               ..++.++|||||||++|+|++|+.||.....     ...+..+...
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~-----~~~~~~~~~~  227 (267)
T cd06628         153 SKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQ-----LQAIFKIGEN  227 (267)
T ss_pred             CcccccccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCccH-----HHHHHHHhcc
Confidence            532                               1245689999999999999999999975322     1122233333


Q ss_pred             CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          537 NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       537 ~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ..+..|..++..+.+++.+||+.|  |..||++.++++
T Consensus       228 ~~~~~~~~~~~~~~~li~~~l~~~--p~~Rp~~~~il~  263 (267)
T cd06628         228 ASPEIPSNISSEAIDFLEKTFEID--HNKRPTAAELLK  263 (267)
T ss_pred             CCCcCCcccCHHHHHHHHHHccCC--chhCcCHHHHhh
Confidence            444556678899999999999999  789999998875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=2e-32  Score=287.06  Aligned_cols=225  Identities=21%  Similarity=0.362  Sum_probs=176.4

Q ss_pred             cccccCCceEEEEEEECC------------------eeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceeccccc
Q 005680          343 RLKCAGDWTNVYRGRLNH------------------ASVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE  401 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g------------------~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~  401 (683)
                      +.+|+|+||.||+|...+                  ..||+|.+....   ....+.+|+.++.+++||||++++++|.+
T Consensus        11 ~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~   90 (296)
T cd05051          11 EKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIARLLGVCTV   90 (296)
T ss_pred             ccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeEEEEEEec
Confidence            567899999999988622                  458999987443   24578899999999999999999999865


Q ss_pred             --ceeEEEeecCCCCchhhhhhccccccc-ccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCC
Q 005680          402 --LKCIVFEYMPNGNLRDKLFTSQRNYKN-CSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL  478 (683)
Q Consensus       402 --~~~LV~Ey~~ggsL~~~L~~~~~~~~~-~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~  478 (683)
                        ..++||||+++++|.+++......... ......+++..++.++.|++.||.|||+   .+|+||||||+||+++.++
T Consensus        91 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~---~~i~H~dlkp~Nili~~~~  167 (296)
T cd05051          91 DPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLES---LNFVHRDLATRNCLVGKNY  167 (296)
T ss_pred             CCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHH---cCccccccchhceeecCCC
Confidence              789999999999999999643210000 0122368999999999999999999999   6799999999999999999


Q ss_pred             cEEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh--CCCCchhhHHHhhhhHHH
Q 005680          479 VAKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT--GRNWAGLVEKAMALDQTT  529 (683)
Q Consensus       479 ~~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt--G~~Pf~~~~~~~~~~~~~  529 (683)
                      .++|+|||++..                           ..++.++|||||||++|+|++  |..||......     ..
T Consensus       168 ~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~-----~~  242 (296)
T cd05051         168 TIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLTDQ-----QV  242 (296)
T ss_pred             ceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcChH-----HH
Confidence            999999998752                           246788999999999999998  66777543221     11


Q ss_pred             HHHHhc-------CCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHH
Q 005680          530 LMQVLD-------GNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELD  577 (683)
Q Consensus       530 ~~~ild-------~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~  577 (683)
                      +.....       ......+..++.++.+++.+||+.|  |..|||+.+|+..|+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~--p~~Rpt~~el~~~L~  295 (296)
T cd05051         243 IENAGHFFRDDGRQIYLPRPPNCPKDIYELMLECWRRD--EEDRPTFREIHLFLQ  295 (296)
T ss_pred             HHHHHhccccccccccCCCccCCCHHHHHHHHHHhccC--hhcCCCHHHHHHHhc
Confidence            111111       1112334456789999999999999  889999999998875

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=1.7e-32  Score=290.66  Aligned_cols=218  Identities=19%  Similarity=0.287  Sum_probs=169.6

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCC---CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNN---GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~---~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      .+.+|.|+||.||+|..  ++..||||.+..   ......+.+|+.++++++||||+++++++.+  ..++||||++ ++
T Consensus        11 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~   89 (309)
T cd07872          11 LEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEYLD-KD   89 (309)
T ss_pred             EEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeCCC-CC
Confidence            45678999999999988  578899999872   2233567899999999999999999999865  7899999998 48


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++..         ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..    
T Consensus        90 l~~~~~~---------~~~~~~~~~~~~~~~qi~~aL~~lH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~  157 (309)
T cd07872          90 LKQYMDD---------CGNIMSMHNVKIFLYQILRGLAYCHR---RKVLHRDLKPQNLLINERGELKLADFGLARAKSVP  157 (309)
T ss_pred             HHHHHHh---------cCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEECccccceecCCC
Confidence            8888742         23458899999999999999999999   6799999999999999999999999998742    


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhh----------hHHHHHHHh----
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMAL----------DQTTLMQVL----  534 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~----------~~~~~~~il----  534 (683)
                                            ..++.++|||||||++|+|+||++||.........          .......+.    
T Consensus       158 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
T cd07872         158 TKTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPTEETWPGISSNDE  237 (309)
T ss_pred             ccccccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhhcchhh
Confidence                                  13577899999999999999999999542210000          000000000    


Q ss_pred             --cCCCC--------CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          535 --DGNAG--------IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       535 --d~~~~--------~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                        +...+        ...+.++.++.+|+.+||+.|  |.+|||+.+++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--p~~R~t~~e~l~  285 (309)
T cd07872         238 FKNYNFPKYKPQPLINHAPRLDTEGIELLTKFLQYE--SKKRISAEEAMK  285 (309)
T ss_pred             hhhhhcCccCCCchhhhccCCCHHHHHHHHHhccCC--hhhCCCHHHHhc
Confidence              00000        011245778999999999999  889999999876

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=1e-32  Score=308.13  Aligned_cols=224  Identities=16%  Similarity=0.260  Sum_probs=169.4

Q ss_pred             CccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccccc----------cee
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE----------LKC  404 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----------~~~  404 (683)
                      +|. ..+++|+|+||.||+|..  ++..||||++....  ....+|+.+|+.++|||||++++++..          ..+
T Consensus        67 ~y~-~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~--~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l~  143 (440)
T PTZ00036         67 SYK-LGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP--QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNIFLN  143 (440)
T ss_pred             eEE-EeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc--chHHHHHHHHHhcCCCCCcceeeeEeecccccCCCceEEE
Confidence            443 346778999999999998  67899999986332  345679999999999999999887521          356


Q ss_pred             EEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCC-cEEEe
Q 005680          405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL-VAKIS  483 (683)
Q Consensus       405 LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~-~~KL~  483 (683)
                      +||||++ ++|.+++....      .....+++..+..|+.||+.||.|||+   .+|+||||||+||||+.++ .+||+
T Consensus       144 lvmE~~~-~~l~~~~~~~~------~~~~~l~~~~~~~~~~qi~~gL~yLH~---~~IiHrDLKp~NILl~~~~~~vkL~  213 (440)
T PTZ00036        144 VVMEFIP-QTVHKYMKHYA------RNNHALPLFLVKLYSYQLCRALAYIHS---KFICHRDLKPQNLLIDPNTHTLKLC  213 (440)
T ss_pred             EEEecCC-ccHHHHHHHHh------hcCCCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCcCHHHEEEcCCCCceeee
Confidence            8999998 57877774321      244679999999999999999999999   7799999999999998664 79999


Q ss_pred             cCCCccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh----------HH
Q 005680          484 GLGLNIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD----------QT  528 (683)
Q Consensus       484 DFGla~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~----------~~  528 (683)
                      |||+|+.                         ..++.++|||||||++|+|+||.+||..........          ..
T Consensus       214 DFGla~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~~~p~~~  293 (440)
T PTZ00036        214 DFGSAKNLLAGQRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQVLGTPTED  293 (440)
T ss_pred             ccccchhccCCCCcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHH
Confidence            9999852                         247789999999999999999999996432110000          00


Q ss_pred             HHHHH----hc---C------CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          529 TLMQV----LD---G------NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       529 ~~~~i----ld---~------~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .+...    .+   +      ....+|...+.++.+|+.+||.+|  |..|||+.+++..
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~d--P~~R~ta~e~l~h  351 (440)
T PTZ00036        294 QLKEMNPNYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYE--PLKRLNPIEALAD  351 (440)
T ss_pred             HHHHhchhhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCC--hhHCcCHHHHhCC
Confidence            00000    00   0      001123346788999999999999  8899999998854

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=2.4e-32  Score=281.82  Aligned_cols=213  Identities=19%  Similarity=0.331  Sum_probs=174.7

Q ss_pred             ccccccCCceEEEEEEE-CCeeEEEEEcCCCC--------CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeec
Q 005680          342 FRLKCAGDWTNVYRGRL-NHASVAIKTLNNGL--------SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYM  410 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~-~g~~VAvK~l~~~~--------~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~  410 (683)
                      .+++|.|+||.||+|.. +|..||||.+....        ....+.+|+.+++.++|+||++++++|.+  ..++||||+
T Consensus         5 ~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   84 (265)
T cd06631           5 GEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIFMEFV   84 (265)
T ss_pred             cceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEEEecC
Confidence            35678999999999987 68899999986221        12458889999999999999999999966  789999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~  490 (683)
                      ++++|.+++.          ....+++..+..++.|++.||.|||+   .+|+|+||+|+||+++.++.++|+|||++..
T Consensus        85 ~~~~L~~~l~----------~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~  151 (265)
T cd06631          85 PGGSISSILN----------RFGPLPEPVFCKYTKQILDGVAYLHN---NCVVHRDIKGNNVMLMPNGIIKLIDFGCARR  151 (265)
T ss_pred             CCCcHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCcCHHhEEECCCCeEEeccchhhHh
Confidence            9999999993          34568999999999999999999999   6799999999999999999999999997632


Q ss_pred             -------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhc--CC
Q 005680          491 -------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLD--GN  537 (683)
Q Consensus       491 -------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild--~~  537 (683)
                                                     ..++.++|||||||++|+|++|..||......     .....+..  ..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~-----~~~~~~~~~~~~  226 (265)
T cd06631         152 LAWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDRL-----AAMFYIGAHRGL  226 (265)
T ss_pred             hhhccccccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCChH-----HHHHHhhhccCC
Confidence                                           23467899999999999999999999643221     11111111  12


Q ss_pred             CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          538 AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       538 ~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .+..+..++..+.+++.+||..+  |..||++.+++.
T Consensus       227 ~~~~~~~~~~~~~~~i~~~l~~~--p~~Rp~~~~~l~  261 (265)
T cd06631         227 MPRLPDSFSAAAIDFVTSCLTRD--QHERPSALQLLR  261 (265)
T ss_pred             CCCCCCCCCHHHHHHHHHHhcCC--cccCCCHHHHhc
Confidence            33455667889999999999999  779999998864

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=6.4e-33  Score=285.85  Aligned_cols=212  Identities=23%  Similarity=0.397  Sum_probs=169.4

Q ss_pred             ccccCCceEEEEEEEC---------CeeEEEEEcCCCC--CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeec
Q 005680          344 LKCAGDWTNVYRGRLN---------HASVAIKTLNNGL--SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYM  410 (683)
Q Consensus       344 liG~G~fG~Vykg~~~---------g~~VAvK~l~~~~--~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~  410 (683)
                      .+|.|+||.||+|...         ...||+|.+....  ..+.+..|+.++..++|||||++++++..  ..++||||+
T Consensus         2 ~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~   81 (258)
T cd05078           2 SLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQEYV   81 (258)
T ss_pred             CCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEecC
Confidence            4689999999999862         2348889886322  23578899999999999999999999865  789999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc--------EEE
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV--------AKI  482 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~--------~KL  482 (683)
                      ++|+|.+++..         ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.        +++
T Consensus        82 ~~g~L~~~l~~---------~~~~~~~~~~~~~~~qi~~~l~~lH~---~~iiH~dlkp~nili~~~~~~~~~~~~~~~l  149 (258)
T cd05078          82 KFGSLDTYLKK---------NKNLINISWKLEVAKQLAWALHFLED---KGLTHGNVCAKNVLLIREEDRKTGNPPFIKL  149 (258)
T ss_pred             CCCcHHHHHhc---------CCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCccceEEEecccccccCCCceEEe
Confidence            99999999952         23468999999999999999999999   77999999999999987765        699


Q ss_pred             ecCCCccc----------------------cCCCcccccccHHHHHHHHhhCC-CCchhhHHHhhhhHHHHHHHhcCCCC
Q 005680          483 SGLGLNIC----------------------DQLNVRSDIRAFGTLLLHLLTGR-NWAGLVEKAMALDQTTLMQVLDGNAG  539 (683)
Q Consensus       483 ~DFGla~~----------------------~~~t~ksDVwSlGviL~eLltG~-~Pf~~~~~~~~~~~~~~~~ild~~~~  539 (683)
                      +|||++..                      ..++.++|||||||++|+|++|. +||......      ....... ...
T Consensus       150 ~d~g~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~~------~~~~~~~-~~~  222 (258)
T cd05078         150 SDPGISITVLPKEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALDSQ------KKLQFYE-DRH  222 (258)
T ss_pred             cccccccccCCchhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhccHH------HHHHHHH-ccc
Confidence            99998742                      13577899999999999999984 666542221      1111111 223


Q ss_pred             CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHH
Q 005680          540 IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       540 ~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                      ..|...+..+.+|+.+||+.|  |..|||+.++++.|
T Consensus       223 ~~~~~~~~~~~~li~~~l~~~--p~~Rps~~~il~~l  257 (258)
T cd05078         223 QLPAPKWTELANLINQCMDYE--PDFRPSFRAIIRDL  257 (258)
T ss_pred             cCCCCCcHHHHHHHHHHhccC--hhhCCCHHHHHHhc
Confidence            445556678999999999999  77999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-32  Score=286.30  Aligned_cols=218  Identities=19%  Similarity=0.270  Sum_probs=175.5

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcC----CCCCHHHHHHHHHHHHhcCCCCccceeccccc-------ceeEEEe
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLN----NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-------LKCIVFE  408 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~----~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-------~~~LV~E  408 (683)
                      .+.+|.|+||.|..+..  +|..||||++.    .....++..+|+.+|+.++|+||+.+++++..       ..|+|+|
T Consensus        27 ~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~DvYiV~e  106 (359)
T KOG0660|consen   27 IEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFNDVYLVFE  106 (359)
T ss_pred             cccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccceeEEehh
Confidence            46679999999999998  78999999987    23345778899999999999999999988732       6799999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCc
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN  488 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla  488 (683)
                      +| +.+|...|          +....|+...+..++.||+.||.|+|+.   +|+||||||+|+|++.+..+||||||+|
T Consensus       107 lM-etDL~~ii----------k~~~~L~d~H~q~f~YQiLrgLKyiHSA---nViHRDLKPsNll~n~~c~lKI~DFGLA  172 (359)
T KOG0660|consen  107 LM-ETDLHQII----------KSQQDLTDDHAQYFLYQILRGLKYIHSA---NVIHRDLKPSNLLLNADCDLKICDFGLA  172 (359)
T ss_pred             HH-hhHHHHHH----------HcCccccHHHHHHHHHHHHHhcchhhcc---cccccccchhheeeccCCCEEeccccce
Confidence            99 48999999          4556699999999999999999999994   5999999999999999999999999998


Q ss_pred             cc----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHH------------------
Q 005680          489 IC----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKA------------------  522 (683)
Q Consensus       489 ~~----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~------------------  522 (683)
                      +.                            ..||.+.||||.|||+.||++|++-|...+..                  
T Consensus       173 R~~~~~~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~e~l  252 (359)
T KOG0660|consen  173 RYLDKFFEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLILELLGTPSEEDL  252 (359)
T ss_pred             eeccccCcccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCHHHH
Confidence            65                            35899999999999999999999988532110                  


Q ss_pred             hhhhHHHHHHHhcC--CCCCCC-----hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          523 MALDQTTLMQVLDG--NAGIWP-----LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       523 ~~~~~~~~~~ild~--~~~~~p-----~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ...........+..  ..+..|     +..++...+|+.+||..|  |.+|+|+++.+..
T Consensus       253 ~~i~s~~ar~yi~slp~~p~~~f~~~fp~a~p~AidLlekmL~fd--P~kRita~eAL~h  310 (359)
T KOG0660|consen  253 QKIRSEKARPYIKSLPQIPKQPFSSIFPNANPLAIDLLEKMLVFD--PKKRITAEEALAH  310 (359)
T ss_pred             HHhccHHHHHHHHhCCCCCCCCHHHHcCCCCHHHHHHHHHHhccC--ccccCCHHHHhcC
Confidence            00011111112221  111111     256788999999999999  8899999988754

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=8.5e-33  Score=296.10  Aligned_cols=206  Identities=20%  Similarity=0.220  Sum_probs=164.4

Q ss_pred             cccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhc---CCCCccceeccccc--ceeEEEeecCC
Q 005680          345 KCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAV---RHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       345 iG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l---~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      +|.|+||.||+|..  +|..||||++...     .....+..|..++..+   .||||+.+++++.+  ..|+||||+++
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~   80 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG   80 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence            48899999999998  5899999998621     1223455677777665   69999999998865  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++.          ....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..  
T Consensus        81 g~L~~~l~----------~~~~~~~~~~~~~~~qil~al~~LH~---~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~  147 (330)
T cd05586          81 GELFWHLQ----------KEGRFSEDRAKFYIAELVLALEHLHK---YDIVYRDLKPENILLDATGHIALCDFGLSKANL  147 (330)
T ss_pred             ChHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeEECCCCCEEEecCCcCcCCC
Confidence            99999983          45678999999999999999999999   6799999999999999999999999998742  


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCC-hhh
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWP-LDL  545 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p-~~~  545 (683)
                                              ..++.++|||||||++|+|+||+.||.....     ...+..+.... ..+| ..+
T Consensus       148 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~~-----~~~~~~i~~~~-~~~~~~~~  221 (330)
T cd05586         148 TDNKTTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDT-----QQMYRNIAFGK-VRFPKNVL  221 (330)
T ss_pred             CCCCCccCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCCCH-----HHHHHHHHcCC-CCCCCccC
Confidence                                    1367889999999999999999999864321     11122222221 2222 246


Q ss_pred             HHHHHHHHHHhhhcCCCccccccHHH
Q 005680          546 AEELAGIALKCLSADQDANRDLRIAG  571 (683)
Q Consensus       546 ~~~l~~Li~~CL~~dP~p~~RPs~~e  571 (683)
                      +..+.+++.+||..|  |..||++.+
T Consensus       222 ~~~~~~li~~~L~~~--P~~R~~~~~  245 (330)
T cd05586         222 SDEGRQFVKGLLNRN--PQHRLGAHR  245 (330)
T ss_pred             CHHHHHHHHHHcCCC--HHHCCCCCC
Confidence            788999999999999  889996443

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=2.5e-32  Score=288.02  Aligned_cols=212  Identities=18%  Similarity=0.263  Sum_probs=173.1

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCC--CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCch
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNN--GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLR  416 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~--~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~  416 (683)
                      +.+|.|+||.||+|..  ++..||+|.+..  ......+.+|+.+++.++||||++++++|.+  ..|+||||+++++|.
T Consensus        26 ~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~~~~~~L~  105 (296)
T cd06654          26 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLT  105 (296)
T ss_pred             EEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeecccCCCCHH
Confidence            4568999999999987  678999999873  2234678899999999999999999998855  789999999999999


Q ss_pred             hhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc------
Q 005680          417 DKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC------  490 (683)
Q Consensus       417 ~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~------  490 (683)
                      +++.           ...+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||++..      
T Consensus       106 ~~~~-----------~~~~~~~~~~~i~~ql~~aL~~LH~---~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~  171 (296)
T cd06654         106 DVVT-----------ETCMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS  171 (296)
T ss_pred             HHHH-----------hcCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEcCCCCEEECccccchhcccccc
Confidence            9983           2357899999999999999999999   6799999999999999999999999998642      


Q ss_pred             -------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC-CCCCCChhhHHHHH
Q 005680          491 -------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG-NAGIWPLDLAEELA  550 (683)
Q Consensus       491 -------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~-~~~~~p~~~~~~l~  550 (683)
                                         ..++.++|||||||++|+|++|++||......    .......... .....+..++..+.
T Consensus       172 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~  247 (296)
T cd06654         172 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPL----RALYLIATNGTPELQNPEKLSAIFR  247 (296)
T ss_pred             ccCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCHH----HhHHHHhcCCCCCCCCccccCHHHH
Confidence                               23568899999999999999999999643221    0111111111 11223456778899


Q ss_pred             HHHHHhhhcCCCccccccHHHHHH
Q 005680          551 GIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       551 ~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +++.+||..+  |..|||+.+++.
T Consensus       248 ~li~~~l~~~--p~~Rpt~~eil~  269 (296)
T cd06654         248 DFLNRCLDMD--VEKRGSAKELLQ  269 (296)
T ss_pred             HHHHHHCcCC--cccCcCHHHHhh
Confidence            9999999999  779999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.6e-32  Score=302.03  Aligned_cols=217  Identities=18%  Similarity=0.265  Sum_probs=168.5

Q ss_pred             CccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      +|. ..+.+|.|+||.||+|..  +++.||||...    ...+.+|+.+|++++|||||++++++..  ..++|||++. 
T Consensus        93 ~y~-~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~----~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~~~-  166 (391)
T PHA03212         93 GFS-ILETFTPGAEGFAFACIDNKTCEHVVIKAGQ----RGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPRYK-  166 (391)
T ss_pred             CcE-EEEEEcCCCCeEEEEEEECCCCCEEEEechh----hhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEecCC-
Confidence            343 446778999999999998  68899999764    2457899999999999999999998855  7799999995 


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      ++|..++.          ....+++..++.|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..  
T Consensus       167 ~~L~~~l~----------~~~~l~~~~~~~i~~qi~~aL~ylH~---~~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~  233 (391)
T PHA03212        167 TDLYCYLA----------AKRNIAICDILAIERSVLRAIQYLHE---NRIIHRDIKAENIFINHPGDVCLGDFGAACFPV  233 (391)
T ss_pred             CCHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChHhEEEcCCCCEEEEeCCcccccc
Confidence            78988883          44568999999999999999999999   6799999999999999999999999999742  


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHH---------h--------------
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKA---------M--------------  523 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~---------~--------------  523 (683)
                                              ..++.++|||||||++|+|+||.+||......         .              
T Consensus       234 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~  313 (391)
T PHA03212        234 DINANKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEF  313 (391)
T ss_pred             cccccccccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhc
Confidence                                    24678999999999999999999776321100         0              


Q ss_pred             h-hhHHHHHHHh----cC---C---CCCCC--hhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          524 A-LDQTTLMQVL----DG---N---AGIWP--LDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       524 ~-~~~~~~~~il----d~---~---~~~~p--~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      . .....+....    ..   .   .+.+.  ..++.++.+|+.+||+.|  |.+|||+.+++.
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~mL~~d--P~~Rpta~elL~  375 (391)
T PHA03212        314 PIDAQANLDEIYIGLAKKSSRKPGSRPLWTNLYELPIDLEYLICKMLAFD--AHHRPSAEALLD  375 (391)
T ss_pred             CcchhHHHHHHHHHHHhccCCCCCCCCCHHHHhhhhhhHHHHHHHHhcCC--hhhCCCHHHHhc
Confidence            0 0000000000    00   0   01111  135678999999999999  889999999875

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.98  E-value=1.6e-32  Score=286.38  Aligned_cols=233  Identities=19%  Similarity=0.267  Sum_probs=184.1

Q ss_pred             cCHHHHHHhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC-CCHHHHHHHHHHHHhc-CCCCccceecccc-
Q 005680          326 YAAEDIRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-LSEEDFQAKVSFLTAV-RHPHLVAVMGCCS-  400 (683)
Q Consensus       326 ~s~~ei~~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~-  400 (683)
                      +.++.+..++++|... +.+|.|+||.||+|..  ++..||+|++... .....+.+|+.++..+ +||||++++++|. 
T Consensus         8 ~~~~~~~~~~~~~~~~-~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   86 (286)
T cd06638           8 IIFDSFPDPSDTWEII-ETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILKALSDHPNVVKFYGMYYK   86 (286)
T ss_pred             EEeecCCCcccceeee-eeeccCCCcEEEEEEECCCCceeEEEeeccccchHHHHHHHHHHHHHHhcCCCeeeeeeeeee
Confidence            4556677788888655 5678999999999988  6789999998632 2346788999999999 6999999999873 


Q ss_pred             ------cceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccc
Q 005680          401 ------ELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL  474 (683)
Q Consensus       401 ------~~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILl  474 (683)
                            +..++||||+++|+|.+++....      .....+++..+..++.|++.||.|||+   .+|+||||||+||++
T Consensus        87 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~nili  157 (286)
T cd06638          87 KDVKNGDQLWLVLELCNGGSVTDLVKGFL------KRGERMEEPIIAYILHEALMGLQHLHV---NKTIHRDVKGNNILL  157 (286)
T ss_pred             cccCCCCeEEEEEeecCCCCHHHHHHHhh------ccCccccHHHHHHHHHHHHHHHHHHHh---CCccccCCCHHhEEE
Confidence                  15799999999999999885321      234568999999999999999999999   679999999999999


Q ss_pred             cCCCcEEEecCCCccc------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhh
Q 005680          475 DRNLVAKISGLGLNIC------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMA  524 (683)
Q Consensus       475 d~~~~~KL~DFGla~~------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~  524 (683)
                      +.++.+||+|||++..                              ..++.++|||||||++|+|++|++||......  
T Consensus       158 ~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~~--  235 (286)
T cd06638         158 TTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLHPM--  235 (286)
T ss_pred             CCCCCEEEccCCceeecccCCCccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCchh--
Confidence            9999999999998742                              11467899999999999999999998643221  


Q ss_pred             hhHHHHHHHhcCC--CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          525 LDQTTLMQVLDGN--AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       525 ~~~~~~~~ild~~--~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                         ..+.......  ....|..++..+.+|+.+||+.|  |..|||+.++++.
T Consensus       236 ---~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--p~~Rps~~ell~~  283 (286)
T cd06638         236 ---RALFKIPRNPPPTLHQPELWSNEFNDFIRKCLTKD--YEKRPTVSDLLQH  283 (286)
T ss_pred             ---HHHhhccccCCCcccCCCCcCHHHHHHHHHHccCC--cccCCCHHHHhhc
Confidence               1111111111  11123345678999999999999  7799999999865

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.98  E-value=3.1e-32  Score=278.62  Aligned_cols=213  Identities=20%  Similarity=0.275  Sum_probs=175.5

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCchhh
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRDK  418 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~~  418 (683)
                      +.+|.|+||.||+|..  ++..||+|.+........+.+|+.++++++||||+++++++.+  ..|+++||+++++|.++
T Consensus         9 ~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~   88 (256)
T cd06612           9 EKLGEGSYGSVYKAIHKETGQVVAIKVVPVEEDLQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEYCGAGSVSDI   88 (256)
T ss_pred             hhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEecCCCCcHHHH
Confidence            4567899999999998  4789999999754446789999999999999999999999866  78999999999999999


Q ss_pred             hhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--------
Q 005680          419 LFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--------  490 (683)
Q Consensus       419 L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--------  490 (683)
                      +..         ....+++..+..++.|++.||.|||+   .+|+|+||+|+||+++.++.+||+|||++..        
T Consensus        89 l~~---------~~~~l~~~~~~~~~~~l~~~l~~lh~---~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~~~  156 (256)
T cd06612          89 MKI---------TNKTLTEEEIAAILYQTLKGLEYLHS---NKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKR  156 (256)
T ss_pred             HHh---------CccCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcceEEECCCCcEEEcccccchhcccCcccc
Confidence            842         34578999999999999999999999   6799999999999999999999999998643        


Q ss_pred             -----------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC--CCCCCChhhHHHHHH
Q 005680          491 -----------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG--NAGIWPLDLAEELAG  551 (683)
Q Consensus       491 -----------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~--~~~~~p~~~~~~l~~  551 (683)
                                       ..++.++|||||||++|+|++|++||......     .....+...  .....+..++..+.+
T Consensus       157 ~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (256)
T cd06612         157 NTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPM-----RAIFMIPNKPPPTLSDPEKWSPEFND  231 (256)
T ss_pred             ccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchh-----hhhhhhccCCCCCCCchhhcCHHHHH
Confidence                             23567899999999999999999998753221     111111111  112223456788999


Q ss_pred             HHHHhhhcCCCccccccHHHHHH
Q 005680          552 IALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       552 Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ++.+||+.|  |..|||+.+|+.
T Consensus       232 ~i~~~l~~~--P~~Rps~~~il~  252 (256)
T cd06612         232 FVKKCLVKD--PEERPSAIQLLQ  252 (256)
T ss_pred             HHHHHHhcC--hhhCcCHHHHhc
Confidence            999999999  779999999875

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.98  E-value=8.6e-33  Score=299.41  Aligned_cols=221  Identities=21%  Similarity=0.358  Sum_probs=183.4

Q ss_pred             ccccCCceEEEEEEECC-eeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCchh
Q 005680          344 LKCAGDWTNVYRGRLNH-ASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRD  417 (683)
Q Consensus       344 liG~G~fG~Vykg~~~g-~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~  417 (683)
                      -+|+|-||.|..|...| ..||||+++....   ...|.+|+.+|.+|+|||||.++|+|..  .+++|+|||++|+|.+
T Consensus       545 kiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~EYmEnGDLnq  624 (807)
T KOG1094|consen  545 KIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITEYMENGDLNQ  624 (807)
T ss_pred             hhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHHHHhcCcHHH
Confidence            45899999999999976 9999999995443   3689999999999999999999999943  8899999999999999


Q ss_pred             hhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-------
Q 005680          418 KLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-------  490 (683)
Q Consensus       418 ~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-------  490 (683)
                      +|....        .+.+.-....+|+.||+.|++||.+   .++|||||.+.|+|+|.++++||+|||+++.       
T Consensus       625 Fl~ahe--------apt~~t~~~vsi~tqiasgmaYLes---~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~yy  693 (807)
T KOG1094|consen  625 FLSAHE--------LPTAETAPGVSICTQIASGMAYLES---LNFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGDYY  693 (807)
T ss_pred             HHHhcc--------CcccccchhHHHHHHHHHHHHHHHh---hchhhccccccceeecCcccEEecCcccccccccCCce
Confidence            996542        1224556667899999999999999   7799999999999999999999999999972       


Q ss_pred             --------------------cCCCcccccccHHHHHHHHhh--CCCCchhhHHHhhhhHHHHHHHhcC----CCCCCChh
Q 005680          491 --------------------DQLNVRSDIRAFGTLLLHLLT--GRNWAGLVEKAMALDQTTLMQVLDG----NAGIWPLD  544 (683)
Q Consensus       491 --------------------~~~t~ksDVwSlGviL~eLlt--G~~Pf~~~~~~~~~~~~~~~~ild~----~~~~~p~~  544 (683)
                                          +.+|.+||||+||+++||+++  ...||+...+...  -.....+++.    .....|+.
T Consensus       694 ~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~v--ven~~~~~~~~~~~~~l~~P~~  771 (807)
T KOG1094|consen  694 RVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQV--VENAGEFFRDQGRQVVLSRPPA  771 (807)
T ss_pred             eeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhHHHH--HHhhhhhcCCCCcceeccCCCc
Confidence                                578999999999999999876  6678876544211  1122233332    23456778


Q ss_pred             hHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          545 LAEELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                      ++..+.+++.+||..+  ..+||++.++...|...
T Consensus       772 cp~~lyelml~Cw~~e--s~~RPsFe~lh~~lq~~  804 (807)
T KOG1094|consen  772 CPQGLYELMLRCWRRE--SEQRPSFEQLHLFLQED  804 (807)
T ss_pred             CcHHHHHHHHHHhchh--hhcCCCHHHHHHHHHHh
Confidence            9999999999999999  78999999999888764

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.98  E-value=1.9e-32  Score=298.66  Aligned_cols=218  Identities=20%  Similarity=0.266  Sum_probs=170.6

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc-------ceeEEEe
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-------LKCIVFE  408 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-------~~~LV~E  408 (683)
                      .+.+|.|+||.||+|..  +|+.||||++...    .....+.+|+.+++.++||||+++++++..       ..|+|||
T Consensus         5 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e   84 (372)
T cd07853           5 DRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIYVVTE   84 (372)
T ss_pred             cceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEEEEee
Confidence            35678999999999997  6899999998632    123578899999999999999999998854       4689999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCc
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN  488 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla  488 (683)
                      |+. ++|.+++          .....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++
T Consensus        85 ~~~-~~l~~~~----------~~~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivH~dlkp~Nili~~~~~~kL~Dfg~a  150 (372)
T cd07853          85 LMQ-SDLHKII----------VSPQPLSSDHVKVFLYQILRGLKYLHS---AGILHRDIKPGNLLVNSNCVLKICDFGLA  150 (372)
T ss_pred             ccc-cCHHHHH----------hcCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChHHEEECCCCCEEeccccce
Confidence            997 6888877          345679999999999999999999999   67999999999999999999999999987


Q ss_pred             cc---------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh---------------
Q 005680          489 IC---------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD---------------  526 (683)
Q Consensus       489 ~~---------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~---------------  526 (683)
                      +.                           ..++.++|||||||++|+|++|++||..........               
T Consensus       151 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~g~~~~~~~~  230 (372)
T cd07853         151 RVEEPDESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLGTPSLEAMR  230 (372)
T ss_pred             eecccCccccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCHHHHH
Confidence            42                           125778999999999999999999995422110000               


Q ss_pred             ---HHHHHHHhcC-CCC-------CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          527 ---QTTLMQVLDG-NAG-------IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       527 ---~~~~~~ild~-~~~-------~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                         ......+... ...       ......++++.+|+.+||+.|  |.+|||+.+++..
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~d--P~~R~t~~e~l~h  288 (372)
T cd07853         231 SACEGARAHILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFD--PDKRISAADALAH  288 (372)
T ss_pred             HhhHHHHHHHHhCCCCCCchHHhcccCCCCCHHHHHHHHHhCCCC--hhhCcCHHHHhcC
Confidence               0000001110 000       112235678999999999999  8899999998764

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.98  E-value=6.4e-32  Score=289.82  Aligned_cols=232  Identities=22%  Similarity=0.326  Sum_probs=184.4

Q ss_pred             cccccccCCceEEEEEEEC---------CeeEEEEEcCCCC---CHHHHHHHHHHHHhc-CCCCccceeccccc--ceeE
Q 005680          341 RFRLKCAGDWTNVYRGRLN---------HASVAIKTLNNGL---SEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCI  405 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~~---------g~~VAvK~l~~~~---~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~L  405 (683)
                      ..+.+|+|+||.||++...         +..||+|.+....   ....+.+|+.++.++ +||||++++++|.+  ..++
T Consensus        16 i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~l   95 (334)
T cd05100          16 LGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYV   95 (334)
T ss_pred             ecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCCceEE
Confidence            3467789999999999751         2369999987432   235788999999999 89999999999866  6899


Q ss_pred             EEeecCCCCchhhhhhcccccc------cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYK------NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV  479 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~------~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~  479 (683)
                      ||||+++|+|.+++........      .......+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.
T Consensus        96 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~---~givH~dlkp~Nill~~~~~  172 (334)
T cd05100          96 LVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLAS---QKCIHRDLAARNVLVTEDNV  172 (334)
T ss_pred             EEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHH---CCeeccccccceEEEcCCCc
Confidence            9999999999999964321000      00123468999999999999999999999   67999999999999999999


Q ss_pred             EEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHH
Q 005680          480 AKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLM  531 (683)
Q Consensus       480 ~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~  531 (683)
                      +||+|||+++.                           ..++.++|||||||++|+|++ |.+||.....     .....
T Consensus       173 ~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~-----~~~~~  247 (334)
T cd05100         173 MKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPV-----EELFK  247 (334)
T ss_pred             EEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCCH-----HHHHH
Confidence            99999998752                           235678999999999999998 8888854221     12222


Q ss_pred             HHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          532 QVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       532 ~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      .+........+..++..+.+|+.+||+.+  |..|||+.+++..|+.+...
T Consensus       248 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~--p~~Rps~~ell~~l~~~~~~  296 (334)
T cd05100         248 LLKEGHRMDKPANCTHELYMIMRECWHAV--PSQRPTFKQLVEDLDRVLTV  296 (334)
T ss_pred             HHHcCCCCCCCCCCCHHHHHHHHHHcccC--hhhCcCHHHHHHHHHHHhhh
Confidence            33333444555667889999999999999  88999999999999998753

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.98  E-value=4.5e-32  Score=287.38  Aligned_cols=171  Identities=18%  Similarity=0.277  Sum_probs=140.6

Q ss_pred             cccccCCceEEEEEEE----CCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccccc----ceeEEEeecCCCC
Q 005680          343 RLKCAGDWTNVYRGRL----NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE----LKCIVFEYMPNGN  414 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~----~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----~~~LV~Ey~~ggs  414 (683)
                      ..+|.|+||.||+|..    ++..||+|.+........+.+|+.+++.++||||+++++++..    ..++||||++ ++
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~-~~   85 (317)
T cd07867           7 CKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAE-HD   85 (317)
T ss_pred             eEeccCCCeeEEEEEecCCCccceEEEEEecCCCCcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeC-Cc
Confidence            4678999999999996    3478999999755555678899999999999999999998732    6789999997 57


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccc----cCCCcEEEecCCCccc
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL----DRNLVAKISGLGLNIC  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILl----d~~~~~KL~DFGla~~  490 (683)
                      |.+++........ ......+++..+..++.||+.||.|||+   .+|+||||||+|||+    +.++.+||+|||+++.
T Consensus        86 l~~~~~~~~~~~~-~~~~~~l~~~~~~~i~~qi~~aL~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~  161 (317)
T cd07867          86 LWHIIKFHRASKA-NKKPMQLPRSMVKSLLYQILDGIHYLHA---NWVLHRDLKPANILVMGEGPERGRVKIADMGFARL  161 (317)
T ss_pred             HHHHHHhhhcccc-CCCCccCCHHHHHHHHHHHHHHHHHHHh---CCEEcCCCCHHHEEEccCCCCCCcEEEeeccceec
Confidence            8887743211100 0123468999999999999999999999   679999999999999    5678999999998742


Q ss_pred             -----------------------------cCCCcccccccHHHHHHHHhhCCCCchh
Q 005680          491 -----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGL  518 (683)
Q Consensus       491 -----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~  518 (683)
                                                   ..++.++|||||||++|+|+||++||..
T Consensus       162 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~  218 (317)
T cd07867         162 FNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHC  218 (317)
T ss_pred             cCCCcccccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCccc
Confidence                                         1257789999999999999999999853

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.98  E-value=5.7e-32  Score=277.13  Aligned_cols=215  Identities=21%  Similarity=0.355  Sum_probs=176.2

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc---ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE---LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~---~~~LV~Ey~~g  412 (683)
                      .+++|.|+||.||++..  ++..||+|.+...    .....+.+|+.++++++||||+++++.+..   ..++||||+++
T Consensus         5 ~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~   84 (257)
T cd08223           5 VRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMGFCEG   84 (257)
T ss_pred             EEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEecccCC
Confidence            46778999999999998  5789999998622    223568899999999999999999988753   46899999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      ++|.+++...        ....+++..+..++.+++.||.|||+   .+|+|+||||+||+++.++.++|+|||++..  
T Consensus        85 ~~l~~~l~~~--------~~~~l~~~~~~~~~~~l~~~l~~lH~---~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~  153 (257)
T cd08223          85 GDLYHKLKEQ--------KGKLLPENQVVEWFVQIAMALQYLHE---KHILHRDLKTQNVFLTRTNIIKVGDLGIARVLE  153 (257)
T ss_pred             CcHHHHHHHh--------cCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCchhEEEecCCcEEEecccceEEec
Confidence            9999999532        23468999999999999999999999   6799999999999999999999999998742  


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHH
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAE  547 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~  547 (683)
                                             ..++.++||||||+++|+|++|+.||.....     ......+.....+..+..++.
T Consensus       154 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  228 (257)
T cd08223         154 NQCDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDM-----NSLVYRIIEGKLPPMPKDYSP  228 (257)
T ss_pred             ccCCccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCH-----HHHHHHHHhcCCCCCccccCH
Confidence                                   2356789999999999999999999864221     111222333333345567888


Q ss_pred             HHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          548 ELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       548 ~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .+.+++.+||+.|  |..|||+.+++.
T Consensus       229 ~~~~li~~~l~~~--p~~Rp~~~~~l~  253 (257)
T cd08223         229 ELGELIATMLSKR--PEKRPSVKSILR  253 (257)
T ss_pred             HHHHHHHHHhccC--cccCCCHHHHhc
Confidence            9999999999999  889999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.98  E-value=4.3e-32  Score=283.61  Aligned_cols=224  Identities=20%  Similarity=0.251  Sum_probs=179.0

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC---CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCc
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG---LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNL  415 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~---~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL  415 (683)
                      +.+|+|+||.||++..  +|..||+|++...   .....+.+|+.++..++||||+++++++.+  ..++||||+++|+|
T Consensus        11 ~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   90 (284)
T cd06620          11 SDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEFMDCGSL   90 (284)
T ss_pred             HHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEecCCCCCH
Confidence            5678999999999998  4889999987632   234678999999999999999999999866  78999999999999


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-----
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-----  490 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-----  490 (683)
                      .+++.          ....+++..+..++.+++.||.|||+.  .+++||||+|+||+++.++.++|+|||++..     
T Consensus        91 ~~~~~----------~~~~~~~~~~~~~~~~i~~~l~~LH~~--~~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~~  158 (284)
T cd06620          91 DRIYK----------KGGPIPVEILGKIAVAVVEGLTYLYNV--HRIMHRDIKPSNILVNSRGQIKLCDFGVSGELINSI  158 (284)
T ss_pred             HHHHH----------hccCCCHHHHHHHHHHHHHHHHHHHHh--cCeeccCCCHHHEEECCCCcEEEccCCcccchhhhc
Confidence            99883          445689999999999999999999962  3699999999999999999999999998642     


Q ss_pred             ------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHh---hh---hHHHHHHHhcCCCCCCCh-hh
Q 005680          491 ------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAM---AL---DQTTLMQVLDGNAGIWPL-DL  545 (683)
Q Consensus       491 ------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~---~~---~~~~~~~ild~~~~~~p~-~~  545 (683)
                                        ..++.++|||||||++|+|+||..||.......   ..   -...+..+........+. .+
T Consensus       159 ~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (284)
T cd06620         159 ADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEPPPRLPSSDF  238 (284)
T ss_pred             cCccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhhccCCCCCchhc
Confidence                              245679999999999999999999997432210   00   011222333332233333 36


Q ss_pred             HHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          546 AEELAGIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       546 ~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      +..+.+|+.+||+.|  |..|||+.+++...--+.
T Consensus       239 ~~~~~~li~~~l~~d--p~~Rpt~~e~~~~~~~~~  271 (284)
T cd06620         239 PEDLRDFVDACLLKD--PTERPTPQQLCAMPPFIQ  271 (284)
T ss_pred             CHHHHHHHHHHhcCC--cccCcCHHHHhcCccccc
Confidence            788999999999999  779999999998754443

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.98  E-value=3.9e-32  Score=284.67  Aligned_cols=232  Identities=19%  Similarity=0.242  Sum_probs=184.9

Q ss_pred             cCHHHHHHhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC-CCHHHHHHHHHHHHhc-CCCCccceeccccc
Q 005680          326 YAAEDIRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-LSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE  401 (683)
Q Consensus       326 ~s~~ei~~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~  401 (683)
                      +.+.++..++++|.... .+|.|+||.||++..  ++..||+|.+... .....+.+|+.++.++ +||||++++++|..
T Consensus        12 ~~~~~~~~~~~~y~~~~-~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~   90 (291)
T cd06639          12 LGLESLGDPTDTWEIIE-TIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEEIEAEYNILQSLPNHPNVVKFYGMFYK   90 (291)
T ss_pred             hhcccCCCCCCCeEEEE-EeecCCCeEEEEEEECCCCCEEEEEEecccccHHHHHHHHHHHHHHhcCCCCeEEEEEEEEe
Confidence            55567777888887764 557899999999998  5889999998743 3346788999999999 89999999998843


Q ss_pred             -------ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccc
Q 005680          402 -------LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL  474 (683)
Q Consensus       402 -------~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILl  474 (683)
                             ..++||||+++|+|.+++....      .....+++..+..++.|++.||.|||+   .+|+|+||||+||++
T Consensus        91 ~~~~~~~~~~lv~ey~~~~sL~~~~~~~~------~~~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dlkp~nili  161 (291)
T cd06639          91 ADKLVGGQLWLVLELCNGGSVTELVKGLL------ICGQRLDEAMISYILYGALLGLQHLHN---NRIIHRDVKGNNILL  161 (291)
T ss_pred             ccccCCCeeEEEEEECCCCcHHHHHHHhh------hcCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHEEE
Confidence                   4799999999999999885321      234568999999999999999999999   679999999999999


Q ss_pred             cCCCcEEEecCCCccc--------------------c----------CCCcccccccHHHHHHHHhhCCCCchhhHHHhh
Q 005680          475 DRNLVAKISGLGLNIC--------------------D----------QLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMA  524 (683)
Q Consensus       475 d~~~~~KL~DFGla~~--------------------~----------~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~  524 (683)
                      +.++.+||+|||++..                    .          .++.++|||||||++|+|++|++||......  
T Consensus       162 ~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~~--  239 (291)
T cd06639         162 TTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHPV--  239 (291)
T ss_pred             cCCCCEEEeecccchhcccccccccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCcHH--
Confidence            9999999999998642                    0          1467899999999999999999998653221  


Q ss_pred             hhHHHHHHHhcCCC--CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          525 LDQTTLMQVLDGNA--GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       525 ~~~~~~~~ild~~~--~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                         ..+..+.....  ...+...+..+.+||.+||+.+  |..||++.+++.
T Consensus       240 ---~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~--p~~Rps~~~il~  286 (291)
T cd06639         240 ---KTLFKIPRNPPPTLLHPEKWCRSFNHFISQCLIKD--FEARPSVTHLLE  286 (291)
T ss_pred             ---HHHHHHhcCCCCCCCcccccCHHHHHHHHHHhhcC--hhhCcCHHHHhc
Confidence               11122221111  1223456678999999999999  779999999875

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.98  E-value=4.9e-32  Score=319.81  Aligned_cols=225  Identities=16%  Similarity=0.254  Sum_probs=175.4

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc----ceeE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE----LKCI  405 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----~~~L  405 (683)
                      ++|.. .+.+|.|+||.||+|..  ++..||+|.+...    .....|..|+.+|..|+|||||+++++|.+    .+||
T Consensus        13 ~~YeI-l~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~lyI   91 (1021)
T PTZ00266         13 NEYEV-IKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKLYI   91 (1021)
T ss_pred             CCEEE-EEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEEEE
Confidence            45543 45678999999999998  5788999998722    223568899999999999999999998743    5799


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCC----CcEEeccCCCCcccccC-----
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEP----RPIVHGSLTPSSILLDR-----  476 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~----~~IiHrDLKP~NILld~-----  476 (683)
                      ||||+++|+|.++|....      .....+++..++.|+.||+.||.|||+.++    .+||||||||+||||+.     
T Consensus        92 VMEY~~gGSL~~lL~k~~------~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~l  165 (1021)
T PTZ00266         92 LMEFCDAGDLSRNIQKCY------KMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHI  165 (1021)
T ss_pred             EEeCCCCCcHHHHHHHHh------hccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCcccc
Confidence            999999999999995431      234579999999999999999999998542    45999999999999964     


Q ss_pred             ------------CCcEEEecCCCccc--------------------------cCCCcccccccHHHHHHHHhhCCCCchh
Q 005680          477 ------------NLVAKISGLGLNIC--------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGL  518 (683)
Q Consensus       477 ------------~~~~KL~DFGla~~--------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~  518 (683)
                                  .+.+||+|||++..                          ..++.++||||||||||+|+||.+||..
T Consensus       166 g~i~~~~~n~ng~~iVKLsDFGlAr~l~~~s~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~  245 (1021)
T PTZ00266        166 GKITAQANNLNGRPIAKIGDFGLSKNIGIESMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHK  245 (1021)
T ss_pred             ccccccccccCCCCceEEccCCccccccccccccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCc
Confidence                        34589999998742                          1367899999999999999999999964


Q ss_pred             hHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          519 VEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       519 ~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ....     ..+...+...........+..+.+||..||..+  |..||++.+++.
T Consensus       246 ~~~~-----~qli~~lk~~p~lpi~~~S~eL~dLI~~~L~~d--PeeRPSa~QlL~  294 (1021)
T PTZ00266        246 ANNF-----SQLISELKRGPDLPIKGKSKELNILIKNLLNLS--AKERPSALQCLG  294 (1021)
T ss_pred             CCcH-----HHHHHHHhcCCCCCcCCCCHHHHHHHHHHhcCC--hhHCcCHHHHhc
Confidence            3221     111122221111112346788999999999999  889999999985

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.98  E-value=1.2e-32  Score=316.56  Aligned_cols=225  Identities=21%  Similarity=0.287  Sum_probs=187.7

Q ss_pred             HHHHHhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc
Q 005680          329 EDIRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE  401 (683)
Q Consensus       329 ~ei~~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~  401 (683)
                      .+++...++|. ..++||+|+||.|..++.  +++.||+|+++.     .....-|..|-.+|.--+.++||.++.+|+|
T Consensus        68 ~~lrl~~~Dfe-ilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD  146 (1317)
T KOG0612|consen   68 KELRLKAEDFE-ILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQD  146 (1317)
T ss_pred             HHHhCCHHhhH-HHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcC
Confidence            34555566774 458999999999999998  689999999983     4455779999999999999999999999988


Q ss_pred             --ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc
Q 005680          402 --LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV  479 (683)
Q Consensus       402 --~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~  479 (683)
                        ++|+|||||+||+|-.++.          ...++++..+..|+.+|+.||.-||+   .|+|||||||+|||||..|+
T Consensus       147 ~~~LYlVMdY~pGGDlltLlS----------k~~~~pE~~ArFY~aEiVlAldslH~---mgyVHRDiKPDNvLld~~GH  213 (1317)
T KOG0612|consen  147 ERYLYLVMDYMPGGDLLTLLS----------KFDRLPEDWARFYTAEIVLALDSLHS---MGYVHRDIKPDNVLLDKSGH  213 (1317)
T ss_pred             ccceEEEEecccCchHHHHHh----------hcCCChHHHHHHHHHHHHHHHHHHHh---ccceeccCCcceeEecccCc
Confidence              8999999999999999993          44589999999999999999999999   78999999999999999999


Q ss_pred             EEEecCCCccc-------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHH
Q 005680          480 AKISGLGLNIC-------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQT  528 (683)
Q Consensus       480 ~KL~DFGla~~-------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~  528 (683)
                      +||+|||.|-.                               +.|++.+|+||+||++|||+.|..||....-     -.
T Consensus       214 ikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYadsl-----ve  288 (1317)
T KOG0612|consen  214 IKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYADSL-----VE  288 (1317)
T ss_pred             EeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHHHH-----HH
Confidence            99999998621                               4689999999999999999999999975322     33


Q ss_pred             HHHHHhcC-CCCCCC--hhhHHHHHHHHHHhhhcCCCcccccc---HHHHHHH
Q 005680          529 TLMQVLDG-NAGIWP--LDLAEELAGIALKCLSADQDANRDLR---IAGVMKE  575 (683)
Q Consensus       529 ~~~~ild~-~~~~~p--~~~~~~l~~Li~~CL~~dP~p~~RPs---~~eVl~~  575 (683)
                      ++..|++. ....+|  ..++++..+||.+.+..   |..|..   +.++-..
T Consensus       289 TY~KIm~hk~~l~FP~~~~VSeeakdLI~~ll~~---~e~RLgrngiedik~H  338 (1317)
T KOG0612|consen  289 TYGKIMNHKESLSFPDETDVSEEAKDLIEALLCD---REVRLGRNGIEDIKNH  338 (1317)
T ss_pred             HHHHHhchhhhcCCCcccccCHHHHHHHHHHhcC---hhhhcccccHHHHHhC
Confidence            44455554 334455  56899999999998864   456777   6666543

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.98  E-value=1.6e-32  Score=297.93  Aligned_cols=206  Identities=18%  Similarity=0.273  Sum_probs=166.8

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      .+++|+|+||.||++..  ++..||||+++.     ......+..|+.++..++||||+++++++.+  ..||||||++|
T Consensus         6 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~E~~~g   85 (360)
T cd05627           6 LKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIMEFLPG   85 (360)
T ss_pred             EEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEeCCCC
Confidence            46778999999999998  589999999862     2234568889999999999999999999866  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..  
T Consensus        86 g~L~~~l~----------~~~~l~~~~~~~~~~qi~~~L~~lH~---~givHrDLkp~NIli~~~~~vkL~DfG~~~~~~  152 (360)
T cd05627          86 GDMMTLLM----------KKDTLSEEATQFYIAETVLAIDAIHQ---LGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLK  152 (360)
T ss_pred             ccHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCeEccCCCHHHEEECCCCCEEEeeccCCcccc
Confidence            99999993          44678999999999999999999999   7799999999999999999999999998631  


Q ss_pred             ----------------------------------------------------------cCCCcccccccHHHHHHHHhhC
Q 005680          491 ----------------------------------------------------------DQLNVRSDIRAFGTLLLHLLTG  512 (683)
Q Consensus       491 ----------------------------------------------------------~~~t~ksDVwSlGviL~eLltG  512 (683)
                                                                                ..++.++|||||||++|+|+||
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG  232 (360)
T cd05627         153 KAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIG  232 (360)
T ss_pred             cccccccccccccCCcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccC
Confidence                                                                      2367889999999999999999


Q ss_pred             CCCchhhHHHhhhhHHHHHHHhcC-CCCCCCh--hhHHHHHHHHHHhhhcCCCcccccc
Q 005680          513 RNWAGLVEKAMALDQTTLMQVLDG-NAGIWPL--DLAEELAGIALKCLSADQDANRDLR  568 (683)
Q Consensus       513 ~~Pf~~~~~~~~~~~~~~~~ild~-~~~~~p~--~~~~~l~~Li~~CL~~dP~p~~RPs  568 (683)
                      ++||.....     ......+... ....+|.  .++..+.+|+.+|+. |  |..|++
T Consensus       233 ~~Pf~~~~~-----~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~~-~--p~~R~~  283 (360)
T cd05627         233 YPPFCSETP-----QETYRKVMNWKETLVFPPEVPISEKAKDLILRFCT-D--SENRIG  283 (360)
T ss_pred             CCCCCCCCH-----HHHHHHHHcCCCceecCCCCCCCHHHHHHHHHhcc-C--hhhcCC
Confidence            999964322     1122223221 1122222  367889999999774 7  667875

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.98  E-value=5.5e-32  Score=282.56  Aligned_cols=216  Identities=20%  Similarity=0.284  Sum_probs=166.7

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhc---CCCCccceeccccc-------ceeEE
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAV---RHPHLVAVMGCCSE-------LKCIV  406 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l---~HpnIV~l~g~~~~-------~~~LV  406 (683)
                      +.+|+|+||.||+|..  +|+.||+|.+...    .....+.+|+.++..+   +||||+++++++.+       ..++|
T Consensus         6 ~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~~~~lv   85 (288)
T cd07863           6 AEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRETKVTLV   85 (288)
T ss_pred             eEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCceEEEE
Confidence            5678999999999998  6889999998732    1234567788887766   69999999998743       46899


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      |||++ ++|.+++...        ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||
T Consensus        86 ~e~~~-~~l~~~~~~~--------~~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dikp~Nili~~~~~~kl~dfg  153 (288)
T cd07863          86 FEHVD-QDLRTYLDKV--------PPPGLPAETIKDLMRQFLRGLDFLHA---NCIVHRDLKPENILVTSGGQVKLADFG  153 (288)
T ss_pred             Ecccc-cCHHHHHHhc--------CCCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEECccC
Confidence            99998 5898888432        23458999999999999999999999   679999999999999999999999999


Q ss_pred             Cccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhc-C-----
Q 005680          487 LNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLD-G-----  536 (683)
Q Consensus       487 la~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild-~-----  536 (683)
                      ++..                        ..++.++|||||||++|+|++|++||.........  ..+..... +     
T Consensus       154 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~~~--~~~~~~~~~~~~~~~  231 (288)
T cd07863         154 LARIYSCQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQL--GKIFDLIGLPPEDDW  231 (288)
T ss_pred             ccccccCcccCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHHHH--HHHHHHhCCCChhhC
Confidence            8742                        24678999999999999999999998543221000  00111000 0     


Q ss_pred             -------------CC----CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          537 -------------NA----GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       537 -------------~~----~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                                   ..    ....+.++..+.+|+.+||+.|  |.+|||+.+++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~R~t~~~~l~  284 (288)
T cd07863         232 PRDVTLPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFN--PHKRISAFRALQ  284 (288)
T ss_pred             cccccccccccCCCCCCchHHhCcCcCHHHHHHHHHHhccC--cccCCCHHHHhc
Confidence                         00    0111245678899999999999  889999998874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.98  E-value=2.6e-32  Score=284.28  Aligned_cols=219  Identities=19%  Similarity=0.261  Sum_probs=170.4

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      +.+|.|+||.||+|..  +|..||||.+...    .....+.+|+.++.+++||||+++++++.+  ..|+||||++ ++
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~-~~   84 (285)
T cd07861           6 EKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEFLS-MD   84 (285)
T ss_pred             eEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEecCC-CC
Confidence            4568999999999998  5889999998622    223578899999999999999999999865  7899999997 68


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++...       .....+++..+..++.||+.||.|||+   .+|+|+||||+|||++.++.+||+|||++..    
T Consensus        85 l~~~~~~~-------~~~~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~  154 (285)
T cd07861          85 LKKYLDSL-------PKGQYMDAELVKSYLYQILQGILFCHS---RRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIP  154 (285)
T ss_pred             HHHHHhcC-------CCCCcCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCCHHHEEEcCCCcEEECcccceeecCCC
Confidence            98888433       233578999999999999999999999   6799999999999999999999999998642    


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhH-------------------HH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQ-------------------TT  529 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~-------------------~~  529 (683)
                                            ..++.++|||||||++|+|+||++||...........                   ..
T Consensus       155 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (285)
T cd07861         155 VRVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSEIDQLFRIFRILGTPTEDVWPGVTSLPD  234 (285)
T ss_pred             cccccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhcchhhHH
Confidence                                  1246789999999999999999999963211000000                   00


Q ss_pred             HHHHhcC----CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          530 LMQVLDG----NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       530 ~~~ild~----~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .......    ........+++++.+++.+||..|  |..|||+.+|+.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~d--P~~Rpt~~~ll~  281 (285)
T cd07861         235 YKNTFPKWKKGSLRSAVKNLDEDGLDLLEKMLIYD--PAKRISAKKALN  281 (285)
T ss_pred             HHhhccccCcchhHHhcCCCCHHHHHHHHHHhcCC--hhhCCCHHHHhc
Confidence            0000000    000112246788999999999999  889999998875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.98  E-value=5.1e-32  Score=282.61  Aligned_cols=215  Identities=19%  Similarity=0.287  Sum_probs=171.3

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      .+++|.|+||.||+|..  ++..||||.+.....   ...+.+|+.++.+++||||++++++|..  ..++||||+++|+
T Consensus         6 ~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   85 (279)
T cd06619           6 QEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEFMDGGS   85 (279)
T ss_pred             eeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEecCCCCC
Confidence            35678999999999997  688999999863322   3568899999999999999999999865  7889999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |..+.              .+++..+..++.|++.||.|||+   .+|+|+||||+|||++.++.++|+|||++..    
T Consensus        86 l~~~~--------------~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~  148 (279)
T cd06619          86 LDVYR--------------KIPEHVLGRIAVAVVKGLTYLWS---LKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNS  148 (279)
T ss_pred             hHHhh--------------cCCHHHHHHHHHHHHHHHHHHHH---CCEeeCCCCHHHEEECCCCCEEEeeCCcceecccc
Confidence            86443              36788889999999999999999   6799999999999999999999999998742    


Q ss_pred             -------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHh--hhhHHHHHHHhcCCCCCC-ChhhHHH
Q 005680          491 -------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAM--ALDQTTLMQVLDGNAGIW-PLDLAEE  548 (683)
Q Consensus       491 -------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~--~~~~~~~~~ild~~~~~~-p~~~~~~  548 (683)
                                         ..++.++|||||||++|+|++|+.||.......  .........+.+...... ....+++
T Consensus       149 ~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (279)
T cd06619         149 IAKTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQCIVDEDPPVLPVGQFSEK  228 (279)
T ss_pred             cccCCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHHHHHHhccCCCCCCCCcCCHH
Confidence                               246788999999999999999999986432110  011111222222222222 2246778


Q ss_pred             HHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          549 LAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      +.+++.+||+.+  |..||++.+++..
T Consensus       229 ~~~li~~~l~~~--P~~Rp~~~eil~~  253 (279)
T cd06619         229 FVHFITQCMRKQ--PKERPAPENLMDH  253 (279)
T ss_pred             HHHHHHHHhhCC--hhhCCCHHHHhcC
Confidence            999999999999  8899999998764

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.98  E-value=4.5e-32  Score=282.49  Aligned_cols=214  Identities=20%  Similarity=0.307  Sum_probs=176.6

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      ..+.+|.|+||.||+|.+  ++..||||.+....   ....+.+|+.+++.++||||+++++++.+  ..++||||++||
T Consensus         8 ~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   87 (277)
T cd06640           8 KLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEYLGGG   87 (277)
T ss_pred             hhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEecCCCC
Confidence            345678999999999997  57899999987332   23578899999999999999999999865  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++.           ...+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++..   
T Consensus        88 ~L~~~i~-----------~~~l~~~~~~~~~~~l~~~l~~lh~---~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~  153 (277)
T cd06640          88 SALDLLR-----------AGPFDEFQIATMLKEILKGLDYLHS---EKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTD  153 (277)
T ss_pred             cHHHHHh-----------cCCCCHHHHHHHHHHHHHHHHHHHh---CCccCcCCChhhEEEcCCCCEEEcccccceeccC
Confidence            9999983           2358899999999999999999999   6799999999999999999999999998732   


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE  548 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~  548 (683)
                                            ..++.++|||||||++|+|+||.+||......     .....+........+..++..
T Consensus       154 ~~~~~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  228 (277)
T cd06640         154 TQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPM-----RVLFLIPKNNPPTLTGEFSKP  228 (277)
T ss_pred             CccccccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChH-----hHhhhhhcCCCCCCchhhhHH
Confidence                                  23567899999999999999999998643221     111111122234445578889


Q ss_pred             HHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          549 LAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      +.+++.+||+.+  |..||++.+++..
T Consensus       229 ~~~li~~~l~~~--p~~Rp~~~~il~~  253 (277)
T cd06640         229 FKEFIDACLNKD--PSFRPTAKELLKH  253 (277)
T ss_pred             HHHHHHHHcccC--cccCcCHHHHHhC
Confidence            999999999999  7799999999776

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.98  E-value=6e-32  Score=277.12  Aligned_cols=216  Identities=20%  Similarity=0.294  Sum_probs=177.9

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCC----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNN----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      .+++|.|+||.||.+..  ++..|++|.+..    ......+.+|+.++++++|+||+++++++.+  ..++||||+++|
T Consensus         5 ~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~~~~~   84 (256)
T cd08221           5 IRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEYANGG   84 (256)
T ss_pred             eeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEecCCC
Confidence            46788999999988887  688999998762    2233568899999999999999999999866  788999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++...        ....+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.+||+|||++..   
T Consensus        85 ~L~~~~~~~--------~~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~  153 (256)
T cd08221          85 TLYDKIVRQ--------KGQLFEEEMVLWYLFQIVSAVSYIHK---AGILHRDIKTLNIFLTKAGLIKLGDFGISKILGS  153 (256)
T ss_pred             cHHHHHHhc--------cccCCCHHHHHHHHHHHHHHHHHHHh---CCccccCCChHhEEEeCCCCEEECcCcceEEccc
Confidence            999999532        24568999999999999999999999   6699999999999999999999999998743   


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE  548 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~  548 (683)
                                            ..++.++||||||+++|+|++|..||.....     ......+..+.....+..++..
T Consensus       154 ~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  228 (256)
T cd08221         154 EYSMAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNP-----LNLVVKIVQGNYTPVVSVYSSE  228 (256)
T ss_pred             ccccccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCCH-----HHHHHHHHcCCCCCCccccCHH
Confidence                                  1246789999999999999999999864221     2222333333333444567889


Q ss_pred             HHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          549 LAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      +.+++.+||..+  |..||++.++++.
T Consensus       229 ~~~~i~~~l~~~--p~~R~s~~~ll~~  253 (256)
T cd08221         229 LISLVHSLLQQD--PEKRPTADEVLDQ  253 (256)
T ss_pred             HHHHHHHHcccC--cccCCCHHHHhhC
Confidence            999999999999  7799999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.98  E-value=3.7e-32  Score=290.81  Aligned_cols=220  Identities=19%  Similarity=0.230  Sum_probs=169.7

Q ss_pred             cccccC--CceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          343 RLKCAG--DWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       343 ~liG~G--~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      .++|+|  +||+||++..  +|..||||++....    ....+.+|+.+++.++|||||+++++|.+  ..++||||+++
T Consensus         4 ~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~   83 (327)
T cd08227           4 TVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAY   83 (327)
T ss_pred             hhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEeccCC
Confidence            467788  6889999998  68999999997332    22457789999999999999999999865  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++...        ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.++++|||.+..  
T Consensus        84 ~~l~~~~~~~--------~~~~l~~~~~~~i~~qi~~~L~~LH~---~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~  152 (327)
T cd08227          84 GSAKDLICTH--------FMDGMSELAIAYILQGVLKALDYIHH---MGYVHRSVKASHILISVDGKVYLSGLRSNLSMI  152 (327)
T ss_pred             CcHHHHHHhh--------ccCCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCChhhEEEecCCcEEEcccchhhccc
Confidence            9999999532        23458999999999999999999999   6799999999999999999999999874210  


Q ss_pred             --------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhH---HHHHHHhc
Q 005680          491 --------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQ---TTLMQVLD  535 (683)
Q Consensus       491 --------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~---~~~~~ild  535 (683)
                                                      ..++.++|||||||++|+|++|++||...........   .......+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~  232 (327)
T cd08227         153 NHGQRLRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLD  232 (327)
T ss_pred             cccccccccccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCcchhHHHHHHhcCCcccccc
Confidence                                            1367899999999999999999999964322100000   00000000


Q ss_pred             C-------------------------------------CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          536 G-------------------------------------NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       536 ~-------------------------------------~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .                                     ........+++.+.+|+.+||+.|  |..|||+.++++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~d--P~~Rpt~~ell~~  307 (327)
T cd08227         233 TTTIPAEELTMKPSRSGANSGLGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRN--PDARPSASTLLNH  307 (327)
T ss_pred             ccchhhhhcccCCcccCCcCCCCcccccCCcCccccCCcccccccccCHHHHHHHHHHHhhC--chhcCCHHHHhcC
Confidence            0                                     000111235678999999999999  8899999999864

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.98  E-value=7.3e-32  Score=275.43  Aligned_cols=216  Identities=28%  Similarity=0.483  Sum_probs=178.1

Q ss_pred             cccccCCceEEEEEEECC------eeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          343 RLKCAGDWTNVYRGRLNH------ASVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g------~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      ..+|.|+||.||+|...+      ..||+|.+....   ....+..|+.++..++||||+++++++.+  ..++||||++
T Consensus         5 ~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~e~~~   84 (258)
T smart00219        5 KKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVMEYME   84 (258)
T ss_pred             ceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEEeccC
Confidence            456899999999999843      889999998443   35688999999999999999999999876  7899999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      +++|.+++...        ....+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++.. 
T Consensus        85 ~~~l~~~~~~~--------~~~~~~~~~~~~~~~ql~~~l~~lh~---~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~  153 (258)
T smart00219       85 GGDLLDYLRKN--------RPKELSLSDLLSFALQIARGMEYLES---KNFIHRDLAARNCLVGENLVVKISDFGLSRDL  153 (258)
T ss_pred             CCCHHHHHHhh--------hhccCCHHHHHHHHHHHHHHHHHHhc---CCeeecccccceEEEccCCeEEEcccCCceec
Confidence            99999999532        11228999999999999999999999   6799999999999999999999999998842 


Q ss_pred             -------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChh
Q 005680          491 -------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLD  544 (683)
Q Consensus       491 -------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~  544 (683)
                                               ..++.++||||||+++|+|++ |.+||.....     ......+........+..
T Consensus       154 ~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~  228 (258)
T smart00219      154 YDDDYYKKKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMSN-----EEVLEYLKKGYRLPKPEN  228 (258)
T ss_pred             ccccccccccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCCH-----HHHHHHHhcCCCCCCCCc
Confidence                                     235678999999999999998 8888864211     122223333334445556


Q ss_pred             hHHHHHHHHHHhhhcCCCccccccHHHHHHHH
Q 005680          545 LAEELAGIALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                      ++..+.+++.+||..|  |..|||+.++++.|
T Consensus       229 ~~~~~~~~i~~~l~~~--p~~Rpt~~~ll~~l  258 (258)
T smart00219      229 CPPEIYKLMLQCWAED--PEDRPTFSELVEIL  258 (258)
T ss_pred             CCHHHHHHHHHHCcCC--hhhCcCHHHHHhhC
Confidence            7889999999999999  88999999998754

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.98  E-value=6.3e-32  Score=279.42  Aligned_cols=217  Identities=20%  Similarity=0.318  Sum_probs=173.5

Q ss_pred             CccccccccccCCceEEEEEEE--CCeeEEEEEcCCC----C---CHHHHHHHHHHHHhcCCCCccceeccccc----ce
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----L---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE----LK  403 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----~~  403 (683)
                      +|... +++|.|+||.||+|..  ++..||+|.+...    .   ....+.+|+.+++.++||||+++++++.+    ..
T Consensus         3 ~~~~~-~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (266)
T cd06651           3 NWRRG-KLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTL   81 (266)
T ss_pred             Ccccc-ceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEE
Confidence            45443 5678999999999987  6889999998622    1   12468889999999999999999998753    56


Q ss_pred             eEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEe
Q 005680          404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKIS  483 (683)
Q Consensus       404 ~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~  483 (683)
                      +++|||+++++|.+++.          ....+++.....++.|++.||.|||+   .+|+||||+|+||+++.++.+||+
T Consensus        82 ~l~~e~~~~~~L~~~l~----------~~~~l~~~~~~~~~~qi~~~l~~LH~---~~i~H~~l~p~nil~~~~~~~~l~  148 (266)
T cd06651          82 TIFMEYMPGGSVKDQLK----------AYGALTESVTRKYTRQILEGMSYLHS---NMIVHRDIKGANILRDSAGNVKLG  148 (266)
T ss_pred             EEEEeCCCCCcHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEECCCCCEEEc
Confidence            89999999999999993          34468999999999999999999999   679999999999999999999999


Q ss_pred             cCCCccc----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhc
Q 005680          484 GLGLNIC----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLD  535 (683)
Q Consensus       484 DFGla~~----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild  535 (683)
                      |||++..                            ..++.++|||||||++|+|++|++||......    .........
T Consensus       149 dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~~~----~~~~~~~~~  224 (266)
T cd06651         149 DFGASKRLQTICMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEAM----AAIFKIATQ  224 (266)
T ss_pred             cCCCccccccccccCCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccccchH----HHHHHHhcC
Confidence            9998742                            12467899999999999999999999753221    111111222


Q ss_pred             CCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          536 GNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       536 ~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ...+..|..+++.+..++ +||..+  |..||++.+|+.
T Consensus       225 ~~~~~~~~~~~~~~~~li-~~~~~~--p~~Rp~~~eil~  260 (266)
T cd06651         225 PTNPQLPSHISEHARDFL-GCIFVE--ARHRPSAEELLR  260 (266)
T ss_pred             CCCCCCchhcCHHHHHHH-HHhcCC--hhhCcCHHHHhc
Confidence            234455666778888888 688888  889999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.98  E-value=5e-32  Score=287.36  Aligned_cols=225  Identities=20%  Similarity=0.241  Sum_probs=174.4

Q ss_pred             CccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEee
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEY  409 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey  409 (683)
                      +|... +.+|.|+||.||++..  +|..||+|.+.....   ...+.+|+.++.+++||||++++++|.+  ..++||||
T Consensus         2 ~~~~~-~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey   80 (308)
T cd06615           2 DFEKL-GELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEH   80 (308)
T ss_pred             CceEE-eeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeec
Confidence            34333 4568999999999998  578899999874322   3468899999999999999999999865  78999999


Q ss_pred             cCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCcc
Q 005680          410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNI  489 (683)
Q Consensus       410 ~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~  489 (683)
                      +++++|.+++.          ....+++..+..++.||+.||.|||+.  .+++|+||||+|||++.++.+||+|||++.
T Consensus        81 ~~~~~L~~~l~----------~~~~~~~~~~~~~~~~i~~~l~~lH~~--~~i~H~dl~p~nil~~~~~~~~l~dfg~~~  148 (308)
T cd06615          81 MDGGSLDQVLK----------KAGRIPENILGKISIAVLRGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSG  148 (308)
T ss_pred             cCCCcHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHhh--CCEEECCCChHHEEEecCCcEEEccCCCcc
Confidence            99999999993          445689999999999999999999972  369999999999999999999999999864


Q ss_pred             c-----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhh---hh-----------------
Q 005680          490 C-----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMA---LD-----------------  526 (683)
Q Consensus       490 ~-----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~---~~-----------------  526 (683)
                      .                       ..++.++|||||||++|+|++|+.||........   ..                 
T Consensus       149 ~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (308)
T cd06615         149 QLIDSMANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDAKELEAMFGRPVSEGEAKESHRPVSG  228 (308)
T ss_pred             cccccccccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcchhhHHHhhcCccccccccCCcccccC
Confidence            2                       2367789999999999999999999853211000   00                 


Q ss_pred             -----------HHHHHHHhcCCCCCCC-hhhHHHHHHHHHHhhhcCCCccccccHHHHHHHH
Q 005680          527 -----------QTTLMQVLDGNAGIWP-LDLAEELAGIALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       527 -----------~~~~~~ild~~~~~~p-~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                                 ......+.....+..| ..++..+.+|+.+||..+  |..|||+.+|+...
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--P~~Rpt~~~ll~~~  288 (308)
T cd06615         229 HPPDSPRPMAIFELLDYIVNEPPPKLPSGAFSDEFQDFVDKCLKKN--PKERADLKELTKHP  288 (308)
T ss_pred             CCCCccchhhHHHHHHHHhcCCCccCcCcccCHHHHHHHHHHccCC--hhhCcCHHHHhcCh
Confidence                       0000011111111111 135678999999999999  77999999988763

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.98  E-value=9.1e-32  Score=279.03  Aligned_cols=224  Identities=19%  Similarity=0.343  Sum_probs=176.9

Q ss_pred             cccccCCceEEEEEEE-------CCeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeec
Q 005680          343 RLKCAGDWTNVYRGRL-------NHASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYM  410 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~-------~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~  410 (683)
                      ..+|.|+||.||+|..       ....||+|.+.....   ...+.+|+.++++++||||+++++++.+  ..++||||+
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   90 (275)
T cd05046          11 TTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPHYMILEYT   90 (275)
T ss_pred             eeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcceEEEEec
Confidence            5568999999999996       236799999874332   3678999999999999999999999976  789999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~  490 (683)
                      ++|+|.+++........ ......+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.++|+|||++..
T Consensus        91 ~~~~L~~~i~~~~~~~~-~~~~~~l~~~~~~~~~~~l~~~l~~LH~---~~i~H~dlkp~Nili~~~~~~~l~~~~~~~~  166 (275)
T cd05046          91 DLGDLKQFLRATKSKDE-KLKPPPLSTKQKVALCTQIALGMDHLSN---ARFVHRDLAARNCLVSSQREVKVSLLSLSKD  166 (275)
T ss_pred             CCCcHHHHHHhcccccc-cccccCCCHHHHHHHHHHHHHHHHHhhh---cCcccCcCccceEEEeCCCcEEEcccccccc
Confidence            99999999964321000 0112369999999999999999999999   6699999999999999999999999998742


Q ss_pred             --------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcC-CCCCCC
Q 005680          491 --------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDG-NAGIWP  542 (683)
Q Consensus       491 --------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~-~~~~~p  542 (683)
                                                ..++.++||||||+++|+|++ |..||.....     ...+...... .....+
T Consensus       167 ~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~~-----~~~~~~~~~~~~~~~~~  241 (275)
T cd05046         167 VYNSEYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSD-----EEVLNRLQAGKLELPVP  241 (275)
T ss_pred             cCcccccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccch-----HHHHHHHHcCCcCCCCC
Confidence                                      234677999999999999999 7888854222     1112222211 112234


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHH
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMKELD  577 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~  577 (683)
                      ..++..+.+++.+||+.+  |..|||+.+++..|.
T Consensus       242 ~~~~~~l~~~i~~~l~~~--p~~Rp~~~~~l~~l~  274 (275)
T cd05046         242 EGCPSRLYKLMTRCWAVN--PKDRPSFSELVSALG  274 (275)
T ss_pred             CCCCHHHHHHHHHHcCCC--cccCCCHHHHHHHhc
Confidence            467789999999999999  779999999998874

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.98  E-value=5.9e-32  Score=285.44  Aligned_cols=216  Identities=17%  Similarity=0.263  Sum_probs=175.5

Q ss_pred             CccccccccccCCceEEEEEEE--CCeeEEEEEcCC--CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeec
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN--GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYM  410 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~--~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~  410 (683)
                      +|... +.+|.|+||.||+|..  +|..||||.+..  ......+.+|+.+++.++||||+++++++.+  ..++|+||+
T Consensus        20 ~y~~~-~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   98 (296)
T cd06655          20 KYTRY-EKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEYL   98 (296)
T ss_pred             eEEEE-EEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEec
Confidence            34443 4567899999999986  689999999862  2234678899999999999999999999865  789999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~  490 (683)
                      ++++|..++.           ...+++..+..++.+++.||.|||+   .+++||||||+||+++.++.+||+|||++..
T Consensus        99 ~~~~L~~~~~-----------~~~l~~~~~~~i~~~l~~al~~LH~---~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~  164 (296)
T cd06655          99 AGGSLTDVVT-----------ETCMDEAQIAAVCRECLQALEFLHA---NQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQ  164 (296)
T ss_pred             CCCcHHHHHH-----------hcCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEccCccchh
Confidence            9999999883           2358999999999999999999999   6799999999999999999999999998642


Q ss_pred             -------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC--CCCCCCh
Q 005680          491 -------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG--NAGIWPL  543 (683)
Q Consensus       491 -------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~--~~~~~p~  543 (683)
                                               ..++.++|||||||++|+|++|++||......     .....+...  .....+.
T Consensus       165 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~-----~~~~~~~~~~~~~~~~~~  239 (296)
T cd06655         165 ITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPL-----RALYLIATNGTPELQNPE  239 (296)
T ss_pred             cccccccCCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-----HHHHHHHhcCCcccCCcc
Confidence                                     23567899999999999999999999653221     111111111  1222345


Q ss_pred             hhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          544 DLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       544 ~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .+++.+.+++.+||..|  |..||++.+++.
T Consensus       240 ~~~~~~~~li~~~l~~d--p~~Rpt~~~il~  268 (296)
T cd06655         240 KLSPIFRDFLNRCLEMD--VEKRGSAKELLQ  268 (296)
T ss_pred             cCCHHHHHHHHHHhhcC--hhhCCCHHHHhh
Confidence            67889999999999999  889999999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=8.1e-32  Score=276.43  Aligned_cols=217  Identities=23%  Similarity=0.263  Sum_probs=173.8

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC--CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCch
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG--LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLR  416 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~--~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~  416 (683)
                      +.+|.|+||.||+|..  ++..+|+|.+...  .....+.+|+.++++++||||+++++++.+  ..|++|||+++++|.
T Consensus         9 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e~~~~~~l~   88 (262)
T cd06613           9 QRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVMEYCGGGSLQ   88 (262)
T ss_pred             EEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEeCCCCCcHH
Confidence            5668999999999998  5788999998732  245678999999999999999999998865  789999999999999


Q ss_pred             hhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc------
Q 005680          417 DKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC------  490 (683)
Q Consensus       417 ~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~------  490 (683)
                      +++..         ....+++..+..++.|++.||.|||+   .+|+|+||+|+||+++.++.+||+|||++..      
T Consensus        89 ~~~~~---------~~~~l~~~~~~~~~~ql~~~l~~lh~---~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~  156 (262)
T cd06613          89 DIYQV---------TRGPLSELQIAYVCRETLKGLAYLHE---TGKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIA  156 (262)
T ss_pred             HHHHh---------hccCCCHHHHHHHHHHHHHHHHHHHh---CCceecCCChhhEEECCCCCEEECccccchhhhhhhh
Confidence            98842         22578999999999999999999999   6799999999999999999999999997632      


Q ss_pred             -------------------c---CCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHH
Q 005680          491 -------------------D---QLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE  548 (683)
Q Consensus       491 -------------------~---~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~  548 (683)
                                         .   .++.++|||||||++|+|+||.+||............ ............+...+..
T Consensus       157 ~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  235 (262)
T cd06613         157 KRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLHPMRALFLI-SKSNFPPPKLKDKEKWSPV  235 (262)
T ss_pred             ccccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHH-HhccCCCccccchhhhhHH
Confidence                               2   4567899999999999999999998643221000000 0000011112223456788


Q ss_pred             HHHHHHHhhhcCCCccccccHHHHHH
Q 005680          549 LAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +.+++.+||..+  |..|||+.+|+.
T Consensus       236 ~~~li~~~l~~~--p~~Rpt~~~il~  259 (262)
T cd06613         236 FHDFIKKCLTKD--PKKRPTATKLLQ  259 (262)
T ss_pred             HHHHHHHHcCCC--hhhCCCHHHHhc
Confidence            999999999999  889999999874

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.98  E-value=5.9e-32  Score=276.85  Aligned_cols=220  Identities=19%  Similarity=0.271  Sum_probs=178.1

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc----ceeEEEeecCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE----LKCIVFEYMPN  412 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----~~~LV~Ey~~g  412 (683)
                      ..+|.|+||.||++..  +|..||+|.+....    ....+..|+.+++.++||||+++++++..    ..+++|||+++
T Consensus         6 ~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~e~~~~   85 (265)
T cd08217           6 ETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVMEYCEG   85 (265)
T ss_pred             eeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEehhccC
Confidence            4568899999999987  67899999986321    23568889999999999999999997743    57899999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCC--CCcEEeccCCCCcccccCCCcEEEecCCCccc
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTE--PRPIVHGSLTPSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~--~~~IiHrDLKP~NILld~~~~~KL~DFGla~~  490 (683)
                      ++|.+++....      .....+++..++.++.+|+.||.|||..+  ..+|+|+||+|+||+++.++.+||+|||++..
T Consensus        86 ~~L~~~l~~~~------~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~  159 (265)
T cd08217          86 GDLAQLIQKCK------KERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKI  159 (265)
T ss_pred             CCHHHHHHHHh------hcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEeccccccc
Confidence            99999995431      23467999999999999999999999221  16799999999999999999999999998753


Q ss_pred             -------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhh
Q 005680          491 -------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDL  545 (683)
Q Consensus       491 -------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~  545 (683)
                                               ..++.++||||||+++|+|++|+.||.....     ......+........+...
T Consensus       160 ~~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~  234 (265)
T cd08217         160 LGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARNQ-----LQLASKIKEGKFRRIPYRY  234 (265)
T ss_pred             ccCCcccccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcCH-----HHHHHHHhcCCCCCCcccc
Confidence                                     1346779999999999999999999875321     1122233334444566678


Q ss_pred             HHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          546 AEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       546 ~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      +..+.+++.+||+.+  |..||++.+|++.
T Consensus       235 ~~~~~~l~~~~l~~~--p~~Rp~~~~il~~  262 (265)
T cd08217         235 SSELNEVIKSMLNVD--PDKRPSTEELLQL  262 (265)
T ss_pred             CHHHHHHHHHHccCC--cccCCCHHHHhhC
Confidence            899999999999999  8899999998763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.98  E-value=7.2e-32  Score=275.85  Aligned_cols=212  Identities=24%  Similarity=0.374  Sum_probs=175.9

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCCC-------CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-------SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-------~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      +.+|.|+||.||+|..  ++..||+|.+....       ....+.+|+.+++.++||||+++++++.+  ..++||||++
T Consensus         6 ~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~   85 (258)
T cd06632           6 ELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIFLELVP   85 (258)
T ss_pred             ceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEEEEecC
Confidence            5678999999999998  58999999986221       23578899999999999999999999866  7899999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      +++|.+++.          ....+++..+..++.||+.||.|||+   .+|+|+||+|+||+++.++.+||+|||++.. 
T Consensus        86 ~~~L~~~~~----------~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~  152 (258)
T cd06632          86 GGSLAKLLK----------KYGSFPEPVIRLYTRQILLGLEYLHD---RNTVHRDIKGANILVDTNGVVKLADFGMAKQV  152 (258)
T ss_pred             CCcHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEccCccceec
Confidence            999999993          34568999999999999999999999   6799999999999999999999999998742 


Q ss_pred             -----------------------cC-CCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhc-CCCCCCChhh
Q 005680          491 -----------------------DQ-LNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLD-GNAGIWPLDL  545 (683)
Q Consensus       491 -----------------------~~-~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild-~~~~~~p~~~  545 (683)
                                             .. ++.++|+|||||++|+|++|.+||.....     ......+.. ......+..+
T Consensus       153 ~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~~-----~~~~~~~~~~~~~~~~~~~~  227 (258)
T cd06632         153 VEFSFAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEG-----VAAVFKIGRSKELPPIPDHL  227 (258)
T ss_pred             cccccccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCcH-----HHHHHHHHhcccCCCcCCCc
Confidence                                   12 67789999999999999999999965332     111112222 2334455667


Q ss_pred             HHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          546 AEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       546 ~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ++.+.+++.+||..+  |..||++.+++.
T Consensus       228 ~~~~~~li~~~l~~~--p~~Rp~~~~~l~  254 (258)
T cd06632         228 SDEAKDFILKCLQRD--PSLRPTAAELLE  254 (258)
T ss_pred             CHHHHHHHHHHhhcC--cccCcCHHHHhc
Confidence            889999999999999  779999999875

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.98  E-value=3.5e-32  Score=303.44  Aligned_cols=224  Identities=21%  Similarity=0.328  Sum_probs=192.3

Q ss_pred             ccccccCCceEEEEEEE--CC----eeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecC
Q 005680          342 FRLKCAGDWTNVYRGRL--NH----ASVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMP  411 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g----~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~  411 (683)
                      .+++|.|+||+||+|.+  .|    -+||||++....   ...++..|+-+|.+++||||++++|+|.. .+.||++|+|
T Consensus       701 ~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~~qlvtq~mP  780 (1177)
T KOG1025|consen  701 DKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLSTLQLVTQLMP  780 (1177)
T ss_pred             hceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccchHHHHHHhcc
Confidence            36789999999999998  33    579999997332   34789999999999999999999999976 7889999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      +|+|.++++..         +..+.....+.|..|||+||.|||.   +.+|||||-..||||..-..+||.|||+++. 
T Consensus       781 ~G~LlDyvr~h---------r~~igsq~lLnw~~QIAkgM~YLe~---qrlVHrdLaaRNVLVksP~hvkitdfgla~ll  848 (1177)
T KOG1025|consen  781 LGCLLDYVREH---------RDNIGSQDLLNWCYQIAKGMKYLEE---QRLVHRDLAARNVLVKSPNHVKITDFGLAKLL  848 (1177)
T ss_pred             cchHHHHHHHh---------hccccHHHHHHHHHHHHHHHHHHHh---cchhhhhhhhhheeecCCCeEEEEecchhhcc
Confidence            99999999643         4568888999999999999999998   7799999999999999999999999999865 


Q ss_pred             --------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHh-cCCCCCCC
Q 005680          491 --------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVL-DGNAGIWP  542 (683)
Q Consensus       491 --------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~il-d~~~~~~p  542 (683)
                                                ..|+.++|||||||++||++| |..|+....      ...+.+++ .+.+...|
T Consensus       849 ~~d~~ey~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~------~~eI~dlle~geRLsqP  922 (1177)
T KOG1025|consen  849 APDEKEYSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIP------AEEIPDLLEKGERLSQP  922 (1177)
T ss_pred             CcccccccccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCC------HHHhhHHHhccccCCCC
Confidence                                      468999999999999999999 888876532      22233333 34567788


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhccc
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKADG  585 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~~~  585 (683)
                      +.++.++..++.+||..|  +..||++.++...+.++.+....
T Consensus       923 piCtiDVy~~mvkCwmid--~~~rp~fkel~~~fs~~ardpqr  963 (1177)
T KOG1025|consen  923 PICTIDVYMVMVKCWMID--ADSRPTFKELAEEFSRMARDPQR  963 (1177)
T ss_pred             CCccHHHHHHHHHHhccC--cccCccHHHHHHHHHHHhcCcce
Confidence            899999999999999999  77999999999999888765444

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=4.1e-32  Score=282.67  Aligned_cols=214  Identities=20%  Similarity=0.306  Sum_probs=174.7

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCCC--CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCch
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNGL--SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLR  416 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~--~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~  416 (683)
                      +.+|.|+||.||+|..  ++..||+|.+....  ....+..|+.++++++||||+++++++.+  ..|+||||+++++|.
T Consensus        11 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   90 (280)
T cd06611          11 GELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIEFCDGGALD   90 (280)
T ss_pred             HHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEeeccCCCcHH
Confidence            4467899999999998  57899999987332  33578899999999999999999999865  789999999999999


Q ss_pred             hhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc------
Q 005680          417 DKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC------  490 (683)
Q Consensus       417 ~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~------  490 (683)
                      +++..         ....+++..+..++.|++.||.|||+   .+|+|+||||+||+++.++.++|+|||++..      
T Consensus        91 ~~~~~---------~~~~l~~~~~~~~~~ql~~~l~~lh~---~~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~  158 (280)
T cd06611          91 SIMLE---------LERGLTEPQIRYVCRQMLEALNFLHS---HKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQ  158 (280)
T ss_pred             HHHHH---------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChhhEEECCCCCEEEccCccchhhccccc
Confidence            99842         23469999999999999999999999   6799999999999999999999999997632      


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCC--CCCCChh
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGN--AGIWPLD  544 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~--~~~~p~~  544 (683)
                                              ..++.++|||||||++|+|++|++||.....     ...+..+....  ....|..
T Consensus       159 ~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~  233 (280)
T cd06611         159 KRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELNP-----MRVLLKILKSEPPTLDQPSK  233 (280)
T ss_pred             ccceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCCH-----HHHHHHHhcCCCCCcCCccc
Confidence                                    1245689999999999999999999965322     11122222221  1223446


Q ss_pred             hHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          545 LAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ++..+.+++.+||..+  |..||++.++++.
T Consensus       234 ~~~~~~~li~~~l~~~--p~~Rps~~~il~~  262 (280)
T cd06611         234 WSSSFNDFLKSCLVKD--PDDRPTAAELLKH  262 (280)
T ss_pred             CCHHHHHHHHHHhccC--hhhCcCHHHHhcC
Confidence            7789999999999999  8899999998764

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.98  E-value=7.4e-32  Score=282.98  Aligned_cols=214  Identities=19%  Similarity=0.284  Sum_probs=173.2

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCCC--CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCc
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL--SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNL  415 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~--~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL  415 (683)
                      .+.+|.|+||.||+|..  ++..||+|.+....  ....+.+|+.+++.++||||+++++++..  ..++||||+++++|
T Consensus        17 ~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l   96 (292)
T cd06644          17 IGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIEFCPGGAV   96 (292)
T ss_pred             hheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEecCCCCcH
Confidence            45678999999999998  57899999987332  23578899999999999999999998754  78999999999999


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-----
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-----  490 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-----  490 (683)
                      ..++..         ....+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||++..     
T Consensus        97 ~~~~~~---------~~~~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~  164 (292)
T cd06644          97 DAIMLE---------LDRGLTEPQIQVICRQMLEALQYLHS---MKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTL  164 (292)
T ss_pred             HHHHHh---------hcCCCCHHHHHHHHHHHHHHHHHHhc---CCeeecCCCcceEEEcCCCCEEEccCccceeccccc
Confidence            888742         23568999999999999999999999   6799999999999999999999999998642     


Q ss_pred             -------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCC--CCCCh
Q 005680          491 -------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNA--GIWPL  543 (683)
Q Consensus       491 -------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~--~~~p~  543 (683)
                                               ..++.++|||||||++|+|++|.+||.....     ......+.....  ...+.
T Consensus       165 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~  239 (292)
T cd06644         165 QRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNP-----MRVLLKIAKSEPPTLSQPS  239 (292)
T ss_pred             cccceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCccccH-----HHHHHHHhcCCCccCCCCc
Confidence                                     1135679999999999999999999864321     111222222211  12244


Q ss_pred             hhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          544 DLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       544 ~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .++..+.+++.+||..+  |..||++.++++
T Consensus       240 ~~~~~~~~li~~~l~~~--p~~Rp~~~~il~  268 (292)
T cd06644         240 KWSMEFRDFLKTALDKH--PETRPSAAQLLE  268 (292)
T ss_pred             ccCHHHHHHHHHHhcCC--cccCcCHHHHhc
Confidence            56788999999999999  779999998865

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.98  E-value=1.1e-31  Score=275.21  Aligned_cols=215  Identities=18%  Similarity=0.300  Sum_probs=179.3

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCC----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNN----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      .+.+|.|+||.||++..  +|..||+|.+..    ......+.+|+.++++++||||+++++++.+  ..++||||++++
T Consensus         5 ~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (256)
T cd08218           5 VKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDYCEGG   84 (256)
T ss_pred             EEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEecCCCC
Confidence            35678999999999988  688999999862    2233578999999999999999999999866  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++...        ....+++..+..++.|++.||.|||+   .+++|+||+|+|||++.++.++|+|||++..   
T Consensus        85 ~l~~~~~~~--------~~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~  153 (256)
T cd08218          85 DLYKKINAQ--------RGVLFPEDQILDWFVQICLALKHVHD---RKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNS  153 (256)
T ss_pred             cHHHHHHhc--------cCCCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEcCCCCEEEeeccceeecCc
Confidence            999988432        23468999999999999999999999   6799999999999999999999999998742   


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE  548 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~  548 (683)
                                            ..++.++|||||||++|+|++|+.||....     .......++.+.....+...+..
T Consensus       154 ~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  228 (256)
T cd08218         154 TVELARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGN-----MKNLVLKIIRGSYPPVSSHYSYD  228 (256)
T ss_pred             chhhhhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCCC-----HHHHHHHHhcCCCCCCcccCCHH
Confidence                                  235678999999999999999999986421     12233344444445556678889


Q ss_pred             HHHHHHHhhhcCCCccccccHHHHHH
Q 005680          549 LAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +.+++.+||+.+  |..||++.+|+.
T Consensus       229 ~~~li~~~l~~~--p~~Rp~~~~vl~  252 (256)
T cd08218         229 LRNLVSQLFKRN--PRDRPSVNSILE  252 (256)
T ss_pred             HHHHHHHHhhCC--hhhCcCHHHHhh
Confidence            999999999999  789999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.98  E-value=5.1e-32  Score=293.65  Aligned_cols=222  Identities=18%  Similarity=0.224  Sum_probs=169.2

Q ss_pred             hcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc-------
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-------  401 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-------  401 (683)
                      .++|.. .+.+|.|+||.||+|..  +|..||||++...    .....+.+|+.+++.++||||+++++++..       
T Consensus        20 ~~~y~~-~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   98 (359)
T cd07876          20 LKRYQQ-LKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEF   98 (359)
T ss_pred             hhceEE-EEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCcccc
Confidence            345543 46778999999999987  6899999998632    234567899999999999999999998743       


Q ss_pred             -ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcE
Q 005680          402 -LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVA  480 (683)
Q Consensus       402 -~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~  480 (683)
                       ..|+||||+++ +|.+.+.            ..+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+
T Consensus        99 ~~~~lv~e~~~~-~l~~~~~------------~~~~~~~~~~~~~qi~~~L~~LH~---~~ivHrDlkp~NIl~~~~~~~  162 (359)
T cd07876          99 QDVYLVMELMDA-NLCQVIH------------MELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTL  162 (359)
T ss_pred             ceeEEEEeCCCc-CHHHHHh------------ccCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEECCCCCE
Confidence             36899999974 6666652            237888999999999999999999   679999999999999999999


Q ss_pred             EEecCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh----------
Q 005680          481 KISGLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD----------  526 (683)
Q Consensus       481 KL~DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~----------  526 (683)
                      ||+|||+++.                        ..++.++|||||||++|+|+||+.||..........          
T Consensus       163 kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~  242 (359)
T cd07876         163 KILDFGLARTACTNFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTPS  242 (359)
T ss_pred             EEecCCCccccccCccCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCc
Confidence            9999998742                        246789999999999999999999996422100000          


Q ss_pred             -------HHHHHHHhcC--CC-----------------CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          527 -------QTTLMQVLDG--NA-----------------GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       527 -------~~~~~~ild~--~~-----------------~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                             ..........  ..                 ...+...+..+.+|+.+||..|  |.+|||+.+++..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~d--P~~R~t~~e~l~h  315 (359)
T cd07876         243 AEFMNRLQPTVRNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVID--PDKRISVDEALRH  315 (359)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCCcchhhhccccccccccccccccchhHHHHHHHHhccC--cccCCCHHHHhcC
Confidence                   0000111110  00                 0011123567899999999999  8899999999864

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.98  E-value=6.6e-32  Score=281.37  Aligned_cols=230  Identities=19%  Similarity=0.283  Sum_probs=181.5

Q ss_pred             cCHHHHHHhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC-CCHHHHHHHHHHHHhc-CCCCccceecccc-
Q 005680          326 YAAEDIRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-LSEEDFQAKVSFLTAV-RHPHLVAVMGCCS-  400 (683)
Q Consensus       326 ~s~~ei~~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~-  400 (683)
                      .++.++..+.+.|... +.+|.|+||.||+|..  ++..||+|++... .....+..|+.++.++ +||||+++++++. 
T Consensus         6 ~~~~~~~~~~~~~~~~-~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   84 (282)
T cd06636           6 IDLSALRDPAGIFELV-EVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRNIATYYGAFIK   84 (282)
T ss_pred             hhhhhhcChhhhhhhh-eeeccCCCeEEEEEEEcCCCcEEEEEEEecChHHHHHHHHHHHHHHHhcCCCcEEEEeeehhc
Confidence            3555666667777655 5668999999999998  6789999998632 3346788999999999 7999999999983 


Q ss_pred             -------cceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccc
Q 005680          401 -------ELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSIL  473 (683)
Q Consensus       401 -------~~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NIL  473 (683)
                             +..|+||||+++|+|.+++...        ....+++..+..++.||+.||.|||+   .+|+|+||+|+||+
T Consensus        85 ~~~~~~~~~~~iv~e~~~~~~L~~~~~~~--------~~~~~~~~~~~~~~~qi~~al~~LH~---~~ivH~dl~~~nil  153 (282)
T cd06636          85 KSPPGHDDQLWLVMEFCGAGSVTDLVKNT--------KGNALKEDWIAYICREILRGLAHLHA---HKVIHRDIKGQNVL  153 (282)
T ss_pred             ccccCCCCEEEEEEEeCCCCcHHHHHHHc--------cCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEE
Confidence                   2578999999999999998533        23458888999999999999999999   67999999999999


Q ss_pred             ccCCCcEEEecCCCccc------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHh
Q 005680          474 LDRNLVAKISGLGLNIC------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAM  523 (683)
Q Consensus       474 ld~~~~~KL~DFGla~~------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~  523 (683)
                      ++.++.++|+|||++..                              ..++.++|||||||++|+|++|.+||...... 
T Consensus       154 i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~~-  232 (282)
T cd06636         154 LTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPM-  232 (282)
T ss_pred             ECCCCCEEEeeCcchhhhhccccCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccCHH-
Confidence            99999999999998642                              12556899999999999999999998643221 


Q ss_pred             hhhHHHHHHHhcCCC-CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          524 ALDQTTLMQVLDGNA-GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       524 ~~~~~~~~~ild~~~-~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                          .....+..... ...+..++..+.+|+.+||..|  |..||++.++++
T Consensus       233 ----~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~--p~~Rp~~~ell~  278 (282)
T cd06636         233 ----RALFLIPRNPPPKLKSKKWSKKFIDFIEGCLVKN--YLSRPSTEQLLK  278 (282)
T ss_pred             ----hhhhhHhhCCCCCCcccccCHHHHHHHHHHhCCC--hhhCcCHHHHhc
Confidence                11111111111 1122346789999999999999  889999998864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.98  E-value=7.2e-32  Score=284.57  Aligned_cols=218  Identities=21%  Similarity=0.305  Sum_probs=170.3

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCC---CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNN---GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~---~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      .+.+|.|+||.||+|..  ++..||+|.+..   ......+.+|+.+++.++||||+++++++.+  ..++||||++ ++
T Consensus        11 ~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e~~~-~~   89 (301)
T cd07873          11 LDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLD-KD   89 (301)
T ss_pred             eeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEeccc-cC
Confidence            35678999999999988  578999999862   2234567899999999999999999999865  7899999997 68


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++..         ....+++..+..++.||+.||.|||+   .+|+|+||||+|||++.++.+||+|||++..    
T Consensus        90 l~~~l~~---------~~~~~~~~~~~~~~~qi~~aL~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~  157 (301)
T cd07873          90 LKQYLDD---------CGNSINMHNVKLFLFQLLRGLNYCHR---RKVLHRDLKPQNLLINERGELKLADFGLARAKSIP  157 (301)
T ss_pred             HHHHHHh---------cCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCHHHEEECCCCcEEECcCcchhccCCC
Confidence            9888842         23468899999999999999999999   6799999999999999999999999998742    


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhh----------hHHHHHHHhcC--
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMAL----------DQTTLMQVLDG--  536 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~----------~~~~~~~ild~--  536 (683)
                                            ..++.++|||||||++|+|+||++||.........          ....+..+...  
T Consensus       158 ~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (301)
T cd07873         158 TKTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEE  237 (301)
T ss_pred             CCcccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChhhchhhhcccc
Confidence                                  12567899999999999999999999642211000          00000011000  


Q ss_pred             ----CCC--------CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          537 ----NAG--------IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       537 ----~~~--------~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                          ..+        .....++..+.+|+.+||..|  |++|||+.+++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~d--p~~R~t~~eil~  285 (301)
T cd07873         238 FKSYNYPKYRADCLHNHAPRLDSDGAELLSKLLQFE--GRKRISAEEAMK  285 (301)
T ss_pred             ccccccCccccccHHhhcCCCCHHHHHHHHHHhcCC--cccCcCHHHHhc
Confidence                000        011245778999999999999  889999999876

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.98  E-value=5.6e-32  Score=279.40  Aligned_cols=212  Identities=18%  Similarity=0.232  Sum_probs=170.5

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCCC--CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCch
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNGL--SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLR  416 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~--~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~  416 (683)
                      +.+|.|+||.||+|..  ++..||+|.++...  ....+.+|+.++..++||||+++++++.+  ..++||||+++++|.
T Consensus        15 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L~   94 (267)
T cd06645          15 QRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEFCGGGSLQ   94 (267)
T ss_pred             HHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEeccCCCcHH
Confidence            4568999999999998  68999999987332  23467889999999999999999998855  789999999999999


Q ss_pred             hhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc------
Q 005680          417 DKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC------  490 (683)
Q Consensus       417 ~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~------  490 (683)
                      +++.          ....+++..+..++.|++.||.|||+   .+|+|+||||+||+++.++.+||+|||++..      
T Consensus        95 ~~~~----------~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~  161 (267)
T cd06645          95 DIYH----------VTGPLSESQIAYVSRETLQGLYYLHS---KGKMHRDIKGANILLTDNGHVKLADFGVSAQITATIA  161 (267)
T ss_pred             HHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEECcceeeeEccCccc
Confidence            9983          44578999999999999999999999   6799999999999999999999999998631      


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhc-C-CCCC--CChh
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLD-G-NAGI--WPLD  544 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild-~-~~~~--~p~~  544 (683)
                                            ..++.++|||||||++|+|++|.+||......     ........ . ....  ....
T Consensus       162 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  236 (267)
T cd06645         162 KRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHPM-----RALFLMTKSNFQPPKLKDKMK  236 (267)
T ss_pred             ccccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccch-----hhHHhhhccCCCCCcccccCC
Confidence                                  12567899999999999999999998532211     01111111 1 1111  1124


Q ss_pred             hHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          545 LAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ++..+.+++.+||..+  |..||++.+|+.
T Consensus       237 ~~~~~~~li~~~l~~~--P~~R~~~~~ll~  264 (267)
T cd06645         237 WSNSFHHFVKMALTKN--PKKRPTAEKLLQ  264 (267)
T ss_pred             CCHHHHHHHHHHccCC--chhCcCHHHHhc
Confidence            5678999999999999  889999998865

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.98  E-value=7.6e-34  Score=287.13  Aligned_cols=216  Identities=17%  Similarity=0.235  Sum_probs=183.0

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCchhh
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRDK  418 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~~  418 (683)
                      ..+|.|+||.||++.+  .|..||||.+..+.+.+++..|+.|+.+++.|+||++||.+..  .+|||||||..||+.+.
T Consensus        39 ~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYCGAGSiSDI  118 (502)
T KOG0574|consen   39 GKLGEGSYGSVHKAIHRESGHVLAIKKVPVDTDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYCGAGSISDI  118 (502)
T ss_pred             HHhcCCcchHHHHHHHhccCcEEEEEecCccchHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhcCCCcHHHH
Confidence            4457999999999988  7999999999988888999999999999999999999998855  89999999999999999


Q ss_pred             hhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--------
Q 005680          419 LFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--------  490 (683)
Q Consensus       419 L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--------  490 (683)
                      ++         .++.+|++..+..|+...+.||.|||.   ..-||||||..||||+.+|.+||+|||.|..        
T Consensus       119 ~R---------~R~K~L~E~EIs~iL~~TLKGL~YLH~---~~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTMAKR  186 (502)
T KOG0574|consen  119 MR---------ARRKPLSEQEISAVLRDTLKGLQYLHD---LKKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTMAKR  186 (502)
T ss_pred             HH---------HhcCCccHHHHHHHHHHHHhHHHHHHH---HHHHHhhcccccEEEcccchhhhhhccccchhhhhHHhh
Confidence            95         467889999999999999999999999   6689999999999999999999999999843        


Q ss_pred             -----------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHH
Q 005680          491 -----------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIA  553 (683)
Q Consensus       491 -----------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li  553 (683)
                                       -.|+.++||||||++..||.-|+|||......   ....+...-.+....-|...+.++.+++
T Consensus       187 NTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPM---RAIFMIPT~PPPTF~KPE~WS~~F~DFi  263 (502)
T KOG0574|consen  187 NTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPM---RAIFMIPTKPPPTFKKPEEWSSEFNDFI  263 (502)
T ss_pred             CccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCccccccc---ceeEeccCCCCCCCCChHhhhhHHHHHH
Confidence                             25899999999999999999999999754321   1100000011122233567889999999


Q ss_pred             HHhhhcCCCccccccHHHHHHH
Q 005680          554 LKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       554 ~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ..||.+.  |..|.|+.++++.
T Consensus       264 ~~CLiK~--PE~R~TA~~L~~H  283 (502)
T KOG0574|consen  264 RSCLIKK--PEERKTALRLCEH  283 (502)
T ss_pred             HHHhcCC--HHHHHHHHHHhhh
Confidence            9999999  7799999888754

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.98  E-value=1.5e-32  Score=301.96  Aligned_cols=216  Identities=23%  Similarity=0.373  Sum_probs=185.0

Q ss_pred             ccccccCCceEEEEEEEC---C--eeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRLN---H--ASVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~---g--~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~g  412 (683)
                      ++++|.|.||+|++|.|+   |  -.||||.++.+.   ...+|.+|+.+|.+|+|||+|+|||+..+ ...+|||+++.
T Consensus       115 ~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~qp~mMV~ELapl  194 (1039)
T KOG0199|consen  115 YELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLDQPAMMVFELAPL  194 (1039)
T ss_pred             HHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeeccchhhHHhhhccc
Confidence            467899999999999993   3  569999998332   45789999999999999999999999987 77899999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |||.+.|+..        ....|.......|+.|||.||.||.+   +++|||||...|+||-..-.+|||||||.+.  
T Consensus       195 GSLldrLrka--------~~~~llv~~Lcdya~QiA~aM~YLes---krlvHRDLAARNlllasprtVKI~DFGLmRaLg  263 (1039)
T KOG0199|consen  195 GSLLDRLRKA--------KKAILLVSRLCDYAMQIAKAMQYLES---KRLVHRDLAARNLLLASPRTVKICDFGLMRALG  263 (1039)
T ss_pred             chHHHHHhhc--------cccceeHHHHHHHHHHHHHHHHHHhh---hhhhhhhhhhhhheecccceeeeecccceeccC
Confidence            9999999642        45678889999999999999999999   8899999999999999999999999999864  


Q ss_pred             --------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHh-cCCCCCCC
Q 005680          491 --------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVL-DGNAGIWP  542 (683)
Q Consensus       491 --------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~il-d~~~~~~p  542 (683)
                                                ..++.+||||+|||+||||+| |..|+-....      ..+...+ ++.....|
T Consensus       264 ~ned~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g------~qIL~~iD~~erLpRP  337 (1039)
T KOG0199|consen  264 ENEDMYVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRG------IQILKNIDAGERLPRP  337 (1039)
T ss_pred             CCCcceEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCH------HHHHHhccccccCCCC
Confidence                                      357899999999999999999 6667654322      2223333 34566778


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHHHH
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                      ..|++++.+++..||..+  |.+|||+..+.+.+
T Consensus       338 k~csedIY~imk~cWah~--paDRptFsair~~~  369 (1039)
T KOG0199|consen  338 KYCSEDIYQIMKNCWAHN--PADRPTFSAIREDL  369 (1039)
T ss_pred             CCChHHHHHHHHHhccCC--ccccccHHHHHHhH
Confidence            899999999999999999  88999999997554

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.98  E-value=7.5e-32  Score=283.84  Aligned_cols=214  Identities=22%  Similarity=0.282  Sum_probs=178.4

Q ss_pred             ccccccCCceEEEEEEECC--eeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRLNH--ASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~g--~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      .+.+|.|.-|+||++.+.|  ..+|+|++...     ....+...|-+||+.++||.+++||+.+..  ..|||||||+|
T Consensus        82 lk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~meyCpG  161 (459)
T KOG0610|consen   82 LKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLVMEYCPG  161 (459)
T ss_pred             HHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEEEecCCC
Confidence            4677899999999999954  89999999732     223467789999999999999999999976  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|..++..        .....+++..+..|+.+|+.||+|||.   .|||.|||||+||||-++|++.|+||.|+..  
T Consensus       162 GdL~~Lrqk--------Qp~~~fse~~aRFYaAEvl~ALEYLHm---lGivYRDLKPENILvredGHIMLsDFDLS~~~~  230 (459)
T KOG0610|consen  162 GDLHSLRQK--------QPGKRFSESAARFYAAEVLLALEYLHM---LGIVYRDLKPENILVREDGHIMLSDFDLSLRCP  230 (459)
T ss_pred             ccHHHHHhh--------CCCCccchhhHHHHHHHHHHHHHHHHh---hceeeccCCcceeEEecCCcEEeeeccccccCC
Confidence            999988853        356789999999999999999999999   7899999999999999999999999998621  


Q ss_pred             -------------------------------------------------------------------------------c
Q 005680          491 -------------------------------------------------------------------------------D  491 (683)
Q Consensus       491 -------------------------------------------------------------------------------~  491 (683)
                                                                                                     .
T Consensus       231 ~~Pt~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~  310 (459)
T KOG0610|consen  231 VSPTLVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGE  310 (459)
T ss_pred             CCCeeeccCCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccceeeecC
Confidence                                                                                           1


Q ss_pred             CCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCC-CCCCChhhHHHHHHHHHHhhhcCCCcccccc--
Q 005680          492 QLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGN-AGIWPLDLAEELAGIALKCLSADQDANRDLR--  568 (683)
Q Consensus       492 ~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~-~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs--  568 (683)
                      ..+.++|+|+|||+||||+.|..||...     ....++..++... ..+-.+.++..+++||.++|.+|  |.+|..  
T Consensus       311 GHgsAVDWWtfGIflYEmLyG~TPFKG~-----~~~~Tl~NIv~~~l~Fp~~~~vs~~akDLIr~LLvKd--P~kRlg~~  383 (459)
T KOG0610|consen  311 GHGSAVDWWTFGIFLYEMLYGTTPFKGS-----NNKETLRNIVGQPLKFPEEPEVSSAAKDLIRKLLVKD--PSKRLGSK  383 (459)
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCcCCC-----CchhhHHHHhcCCCcCCCCCcchhHHHHHHHHHhccC--hhhhhccc
Confidence            2456899999999999999999999753     3355666666542 22222367899999999999999  889987  


Q ss_pred             --HHHHH
Q 005680          569 --IAGVM  573 (683)
Q Consensus       569 --~~eVl  573 (683)
                        +.||-
T Consensus       384 rGA~eIK  390 (459)
T KOG0610|consen  384 RGAAEIK  390 (459)
T ss_pred             cchHHhh
Confidence              55543

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=9.5e-32  Score=279.03  Aligned_cols=212  Identities=22%  Similarity=0.309  Sum_probs=174.4

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCc
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNL  415 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL  415 (683)
                      +.+|.|+||.||+|..  ++..||+|.+....   ....+.+|+.+++.++||||+++++++.+  ..|+|+||+++++|
T Consensus         7 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   86 (274)
T cd06609           7 ECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEYCGGGSC   86 (274)
T ss_pred             hhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEeeCCCcH
Confidence            4567899999999998  68999999987332   23568899999999999999999998865  78999999999999


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-----
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-----  490 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-----  490 (683)
                      .+++.          . ..+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||+++.     
T Consensus        87 ~~~~~----------~-~~~~~~~~~~~~~ql~~~l~~lh~---~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~  152 (274)
T cd06609          87 LDLLK----------P-GKLDETYIAFILREVLLGLEYLHE---EGKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTM  152 (274)
T ss_pred             HHHHh----------h-cCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEECCCCCEEEcccccceeecccc
Confidence            99983          2 278999999999999999999999   6799999999999999999999999998743     


Q ss_pred             --------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChh-hHHHH
Q 005680          491 --------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLD-LAEEL  549 (683)
Q Consensus       491 --------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~-~~~~l  549 (683)
                                          ..++.++|||||||++|+|+||.+||.....     ......+.....+..+.. ++..+
T Consensus       153 ~~~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  227 (274)
T cd06609         153 SKRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHP-----MRVLFLIPKNNPPSLEGNKFSKPF  227 (274)
T ss_pred             cccccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCch-----HHHHHHhhhcCCCCCcccccCHHH
Confidence                                2357899999999999999999999964321     111122222223333333 67889


Q ss_pred             HHHHHHhhhcCCCccccccHHHHHHH
Q 005680          550 AGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       550 ~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .+++.+||..+  |..|||+.+++..
T Consensus       228 ~~~l~~~l~~~--p~~Rpt~~~il~~  251 (274)
T cd06609         228 KDFVSLCLNKD--PKERPSAKELLKH  251 (274)
T ss_pred             HHHHHHHhhCC--hhhCcCHHHHhhC
Confidence            99999999999  7799999999763

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.97  E-value=1.1e-31  Score=277.09  Aligned_cols=217  Identities=19%  Similarity=0.275  Sum_probs=174.2

Q ss_pred             CccccccccccCCceEEEEEEE--CCeeEEEEEcCCC----C---CHHHHHHHHHHHHhcCCCCccceeccccc----ce
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----L---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE----LK  403 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----~~  403 (683)
                      +|.. .+++|+|+||.||+|..  +|..||||.+...    .   ....+.+|+.++++++||||+++++++.+    ..
T Consensus         3 ~~~~-~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (265)
T cd06652           3 NWRL-GKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL   81 (265)
T ss_pred             cceE-eeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence            4444 35678999999999997  5899999987521    1   12467889999999999999999998854    46


Q ss_pred             eEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEe
Q 005680          404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKIS  483 (683)
Q Consensus       404 ~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~  483 (683)
                      ++||||+++++|.+++.          ....+++..+..++.|++.||.|||+   .+|+|+||||+|||++.++.++|+
T Consensus        82 ~~v~e~~~~~~L~~~l~----------~~~~~~~~~~~~~~~~l~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~~l~  148 (265)
T cd06652          82 SIFMEHMPGGSIKDQLK----------SYGALTENVTRKYTRQILEGVSYLHS---NMIVHRDIKGANILRDSVGNVKLG  148 (265)
T ss_pred             EEEEEecCCCcHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEecCCCCEEEC
Confidence            79999999999999983          34568899999999999999999999   679999999999999999999999


Q ss_pred             cCCCccc----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhc
Q 005680          484 GLGLNIC----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLD  535 (683)
Q Consensus       484 DFGla~~----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild  535 (683)
                      |||++..                            ..++.++|||||||++|+|++|++||......    .........
T Consensus       149 Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~----~~~~~~~~~  224 (265)
T cd06652         149 DFGASKRLQTICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFEAM----AAIFKIATQ  224 (265)
T ss_pred             cCccccccccccccccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCccchH----HHHHHHhcC
Confidence            9997741                            23567899999999999999999998643221    111111222


Q ss_pred             CCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          536 GNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       536 ~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +..+..|...+..+.+++.+||. +  |..||++.+|+.
T Consensus       225 ~~~~~~~~~~~~~~~~~i~~~l~-~--p~~Rp~~~~il~  260 (265)
T cd06652         225 PTNPVLPPHVSDHCRDFLKRIFV-E--AKLRPSADELLR  260 (265)
T ss_pred             CCCCCCchhhCHHHHHHHHHHhc-C--hhhCCCHHHHhc
Confidence            33445566778889999999994 7  789999998875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=8.9e-32  Score=277.42  Aligned_cols=225  Identities=20%  Similarity=0.294  Sum_probs=179.1

Q ss_pred             HhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC-CCHHHHHHHHHHHHhc-CCCCccceeccccc-------
Q 005680          333 LATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-LSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE-------  401 (683)
Q Consensus       333 ~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~-------  401 (683)
                      .++++|... +.+|.|+||.||+|..  ++..|++|++... .....+.+|+.+++++ .||||++++++|.+       
T Consensus         3 ~~~~~y~~~-~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~   81 (275)
T cd06608           3 DPTGIFELV-EVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGND   81 (275)
T ss_pred             Cchhheehe-eeecCCCCeEEEEEEECCCCcEEEEEEEecCchhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcc
Confidence            345666554 5677899999999998  5788999998733 3456789999999999 79999999999854       


Q ss_pred             -ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcE
Q 005680          402 -LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVA  480 (683)
Q Consensus       402 -~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~  480 (683)
                       ..++||||+++++|.+++....      .....+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.+
T Consensus        82 ~~~~lv~e~~~~~~L~~~~~~~~------~~~~~~~~~~~~~~~~ql~~al~~lH~---~~i~H~~l~p~ni~~~~~~~~  152 (275)
T cd06608          82 DQLWLVMELCGGGSVTDLVKGLR------KKGKRLKEEWIAYILRETLRGLAYLHE---NKVIHRDIKGQNILLTKNAEV  152 (275)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHh------hcCCCCCHHHHHHHHHHHHHHHHHHhc---CCcccCCCCHHHEEEccCCeE
Confidence             3699999999999999985331      124678999999999999999999999   679999999999999999999


Q ss_pred             EEecCCCccc------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHH
Q 005680          481 KISGLGLNIC------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTL  530 (683)
Q Consensus       481 KL~DFGla~~------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~  530 (683)
                      ||+|||++..                              ..++.++|||||||++|+|++|++||.....     ....
T Consensus       153 ~l~d~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~-----~~~~  227 (275)
T cd06608         153 KLVDFGVSAQLDSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMHP-----MRAL  227 (275)
T ss_pred             EECCCccceecccchhhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccch-----HHHH
Confidence            9999998632                              1246689999999999999999999964221     1122


Q ss_pred             HHHhcCCC--CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          531 MQVLDGNA--GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       531 ~~ild~~~--~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ..+.....  ...+..++..+.+|+.+||..|  |..|||+.+++.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~d--p~~Rpt~~~ll~  271 (275)
T cd06608         228 FKIPRNPPPTLKSPENWSKKFNDFISECLIKN--YEQRPFMEELLE  271 (275)
T ss_pred             HHhhccCCCCCCchhhcCHHHHHHHHHHhhcC--hhhCcCHHHHhc
Confidence            22222211  1222346778999999999999  889999999875

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.97  E-value=1.1e-31  Score=276.38  Aligned_cols=220  Identities=21%  Similarity=0.250  Sum_probs=177.7

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCc
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNL  415 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL  415 (683)
                      +.+|.|+||.||++..  ++..||+|.+....   ....+.+|+.++++++||||+++++++..  ..++|+||+++++|
T Consensus         7 ~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   86 (265)
T cd06605           7 GELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEYMDGGSL   86 (265)
T ss_pred             HHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEecCCCcH
Confidence            4568899999999998  48999999987432   23568899999999999999999998865  78999999999999


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-----
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-----  490 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-----  490 (683)
                      .+++...         ...+++..+..++.|++.||.|||+.  .+++|+||||+||+++.++.++|+|||++..     
T Consensus        87 ~~~~~~~---------~~~~~~~~~~~~~~~l~~~l~~lH~~--~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~  155 (265)
T cd06605          87 DKILKEV---------QGRIPERILGKIAVAVLKGLTYLHEK--HKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSL  155 (265)
T ss_pred             HHHHHHc---------cCCCCHHHHHHHHHHHHHHHHHHcCC--CCeecCCCCHHHEEECCCCCEEEeecccchhhHHHH
Confidence            9999422         26789999999999999999999981  3599999999999999999999999998742     


Q ss_pred             ------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChh-hHHHHHH
Q 005680          491 ------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLD-LAEELAG  551 (683)
Q Consensus       491 ------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~-~~~~l~~  551 (683)
                                        ..++.++||||||+++|+|++|..||.............+..++.......+.. ++..+.+
T Consensus       156 ~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (265)
T cd06605         156 AKTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNEPPPRLPSGKFSPDFQD  235 (265)
T ss_pred             hhcccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCccccccccHHHHHHHHhcCCCCCCChhhcCHHHHH
Confidence                              246778999999999999999999986432110011122333444434444444 7888999


Q ss_pred             HHHHhhhcCCCccccccHHHHHHH
Q 005680          552 IALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       552 Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      +|.+||..|  |..|||+.+++..
T Consensus       236 li~~~l~~~--p~~Rpt~~~ll~~  257 (265)
T cd06605         236 FVNLCLIKD--PRERPSYKELLEH  257 (265)
T ss_pred             HHHHHcCCC--chhCcCHHHHhhC
Confidence            999999999  8899999998753

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.97  E-value=1.2e-31  Score=279.13  Aligned_cols=214  Identities=20%  Similarity=0.305  Sum_probs=176.0

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      ..+.+|.|+||.||+|..  ++..||||.+....   ....+.+|+.++.+++||||+++++++.+  ..++||||+++|
T Consensus         8 ~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~   87 (277)
T cd06641           8 KLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGG   87 (277)
T ss_pred             hheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeCCCC
Confidence            345678999999999987  57899999986322   23568899999999999999999999865  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++.           ...+++..+..++.+++.||.|||+   .+++|+||+|+||+++.++.++|+|||++..   
T Consensus        88 ~l~~~i~-----------~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~  153 (277)
T cd06641          88 SALDLLE-----------PGPLDETQIATILREILKGLDYLHS---EKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTD  153 (277)
T ss_pred             cHHHHHh-----------cCCCCHHHHHHHHHHHHHHHHHHcc---CCeecCCCCHHhEEECCCCCEEEeecccceeccc
Confidence            9999883           2358999999999999999999999   6799999999999999999999999998732   


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE  548 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~  548 (683)
                                            ...+.++|||||||++|+|++|.+||.....     ......+........+..++..
T Consensus       154 ~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  228 (277)
T cd06641         154 TQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHP-----MKVLFLIPKNNPPTLEGNYSKP  228 (277)
T ss_pred             chhhhccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccch-----HHHHHHHhcCCCCCCCcccCHH
Confidence                                  2346789999999999999999999864322     1111122222333445567889


Q ss_pred             HHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          549 LAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      +.+++.+||..+  |..||++.+++..
T Consensus       229 ~~~~i~~~l~~~--p~~Rp~~~~~l~~  253 (277)
T cd06641         229 LKEFVEACLNKE--PSFRPTAKELLKH  253 (277)
T ss_pred             HHHHHHHHccCC--hhhCcCHHHHHhC
Confidence            999999999999  7799999999885

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.97  E-value=6.4e-32  Score=284.62  Aligned_cols=212  Identities=17%  Similarity=0.186  Sum_probs=172.2

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC--CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCch
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG--LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLR  416 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~--~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~  416 (683)
                      ..+|.|+||.||++..  ++..||||.+...  ...+.+.+|+.+++.++||||+++++.+..  ..++||||+++++|.
T Consensus        28 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L~  107 (292)
T cd06658          28 IKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEGGALT  107 (292)
T ss_pred             hcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCCCcHH
Confidence            4568999999999987  6889999998632  223568899999999999999999998855  789999999999999


Q ss_pred             hhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc------
Q 005680          417 DKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC------  490 (683)
Q Consensus       417 ~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~------  490 (683)
                      +++.           ...+++..+..++.||+.||.|||+   .+|+||||||+||+++.++.++|+|||++..      
T Consensus       108 ~~~~-----------~~~l~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~  173 (292)
T cd06658         108 DIVT-----------HTRMNEEQIATVCLSVLRALSYLHN---QGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVP  173 (292)
T ss_pred             HHHh-----------cCCCCHHHHHHHHHHHHHHHHHHHH---CCEeecCCCHHHEEEcCCCCEEEccCcchhhcccccc
Confidence            9882           2358899999999999999999999   6799999999999999999999999998742      


Q ss_pred             -------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC--CCCCCChhhHHHH
Q 005680          491 -------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG--NAGIWPLDLAEEL  549 (683)
Q Consensus       491 -------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~--~~~~~p~~~~~~l  549 (683)
                                         ..++.++|||||||++|+|++|+.||......     ..+..+...  .........+..+
T Consensus       174 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  248 (292)
T cd06658         174 KRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPL-----QAMRRIRDNLPPRVKDSHKVSSVL  248 (292)
T ss_pred             cCceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-----HHHHHHHhcCCCccccccccCHHH
Confidence                               24578999999999999999999998643221     111111111  1111223467789


Q ss_pred             HHHHHHhhhcCCCccccccHHHHHHH
Q 005680          550 AGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       550 ~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .+++.+||..|  |..|||+.+++..
T Consensus       249 ~~li~~~l~~~--P~~Rpt~~~il~~  272 (292)
T cd06658         249 RGFLDLMLVRE--PSQRATAQELLQH  272 (292)
T ss_pred             HHHHHHHccCC--hhHCcCHHHHhhC
Confidence            99999999999  8899999998864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.97  E-value=1.2e-31  Score=280.86  Aligned_cols=227  Identities=22%  Similarity=0.270  Sum_probs=176.5

Q ss_pred             CccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceeccccc----ceeEEE
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE----LKCIVF  407 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----~~~LV~  407 (683)
                      +|... +.+|.|++|.||+|.+  ++..||+|.+....   ....+.+|++++++++||||++++++|.+    ..++||
T Consensus         2 ~~~~~-~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   80 (287)
T cd06621           2 KIVEL-SRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAM   80 (287)
T ss_pred             ceEEE-EEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEE
Confidence            34443 4567899999999998  57999999987332   24578999999999999999999998843    579999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCC
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL  487 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGl  487 (683)
                      ||+++++|.+++....      .....++...+..++.||+.||.|||+   .+++|+||+|+||+++.++.++|+|||+
T Consensus        81 e~~~~~~L~~~l~~~~------~~~~~l~~~~~~~i~~~i~~~L~~lH~---~~i~H~dl~~~nil~~~~~~~~l~dfg~  151 (287)
T cd06621          81 EYCEGGSLDSIYKKVK------KRGGRIGEKVLGKIAESVLKGLSYLHS---RKIIHRDIKPSNILLTRKGQVKLCDFGV  151 (287)
T ss_pred             EecCCCCHHHHHHHHH------hcCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEecCCeEEEeeccc
Confidence            9999999999875331      234568999999999999999999999   6799999999999999999999999998


Q ss_pred             ccc-----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCC---
Q 005680          488 NIC-----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIW---  541 (683)
Q Consensus       488 a~~-----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~---  541 (683)
                      +..                       ..++.++|||||||++|+|++|..||................+........   
T Consensus       152 ~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (287)
T cd06621         152 SGELVNSLAGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNMPNPELKDE  231 (287)
T ss_pred             cccccccccccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhcCCchhhccC
Confidence            642                       245778999999999999999999987532100011111122222111111   


Q ss_pred             C---hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          542 P---LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       542 p---~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      +   ...++.+.+++.+||..+  |..|||+.+++..
T Consensus       232 ~~~~~~~~~~~~~li~~~l~~~--p~~Rpt~~eil~~  266 (287)
T cd06621         232 PGNGIKWSEEFKDFIKQCLEKD--PTRRPTPWDMLEH  266 (287)
T ss_pred             CCCCCchHHHHHHHHHHHcCCC--cccCCCHHHHHhC
Confidence            1   235678999999999999  8899999998864

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.97  E-value=6.2e-32  Score=292.33  Aligned_cols=223  Identities=17%  Similarity=0.212  Sum_probs=170.1

Q ss_pred             hhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc------
Q 005680          334 ATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE------  401 (683)
Q Consensus       334 at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~------  401 (683)
                      ..++|.. .+.+|+|+||.||++..  .+..||||++....    ....+.+|+.+++.++||||+++++++..      
T Consensus        15 ~~~~y~~-~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~   93 (355)
T cd07874          15 VLKRYQN-LKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEE   93 (355)
T ss_pred             hhhceeE-EEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeeccccccc
Confidence            3456644 36778999999999987  58899999987321    23567889999999999999999998742      


Q ss_pred             --ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc
Q 005680          402 --LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV  479 (683)
Q Consensus       402 --~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~  479 (683)
                        ..|+||||++ ++|.+.+.            ..+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.
T Consensus        94 ~~~~~lv~e~~~-~~l~~~~~------------~~l~~~~~~~~~~qi~~aL~~LH~---~givHrDikp~Nill~~~~~  157 (355)
T cd07874          94 FQDVYLVMELMD-ANLCQVIQ------------MELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCT  157 (355)
T ss_pred             cceeEEEhhhhc-ccHHHHHh------------hcCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChHHEEECCCCC
Confidence              4689999997 46766662            247889999999999999999999   67999999999999999999


Q ss_pred             EEEecCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh---------
Q 005680          480 AKISGLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD---------  526 (683)
Q Consensus       480 ~KL~DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~---------  526 (683)
                      +||+|||+++.                        ..++.++|||||||++|+|++|+.||..........         
T Consensus       158 ~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~  237 (355)
T cd07874         158 LKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTP  237 (355)
T ss_pred             EEEeeCcccccCCCccccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCC
Confidence            99999999853                        246789999999999999999999986422100000         


Q ss_pred             --------HHHHHHHhcCC-------------------CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          527 --------QTTLMQVLDGN-------------------AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       527 --------~~~~~~ild~~-------------------~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                              .......+...                   ....+...+..+.+|+.+||..|  |.+|||+.+++..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~d--P~~Rps~~ell~h  311 (355)
T cd07874         238 CPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVID--PAKRISVDEALQH  311 (355)
T ss_pred             CHHHHHhhcHHHHHHHhcCCccccccchhhccccccccccccccccchHHHHHHHHHhcCC--chhcCCHHHHhcC
Confidence                    00011111100                   00111224567899999999999  8899999998864

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>PTZ00284 protein kinase; Provisional

Probab=99.97  E-value=5.8e-32  Score=304.09  Aligned_cols=232  Identities=19%  Similarity=0.259  Sum_probs=169.3

Q ss_pred             HHHHHHhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC-CCHHHHHHHHHHHHhcCCC------Cccceecc
Q 005680          328 AEDIRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHP------HLVAVMGC  398 (683)
Q Consensus       328 ~~ei~~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-~~~~~~~~Ev~iL~~l~Hp------nIV~l~g~  398 (683)
                      .+++...+++|.. .+++|.|+||.||+|.+  ++..||||+++.. .....+..|+.++..++|.      +|+.++++
T Consensus       121 ~~~~~~~~~~y~i-~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~  199 (467)
T PTZ00284        121 GEDIDVSTQRFKI-LSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPKYTRDAKIEIQFMEKVRQADPADRFPLMKIQRY  199 (467)
T ss_pred             CCccccCCCcEEE-EEEEEeccCEEEEEEEEcCCCeEEEEEEEecchhhHHHHHHHHHHHHHHhhcCcccCcceeeeEEE
Confidence            3444455667765 45678999999999988  5789999999632 2334567788888877654      57888888


Q ss_pred             ccc---ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccccc
Q 005680          399 CSE---LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD  475 (683)
Q Consensus       399 ~~~---~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld  475 (683)
                      |..   ..||||+++ |++|.+++.          ....+++..+..|+.||+.||.|||+.  .+||||||||+|||++
T Consensus       200 ~~~~~~~~~iv~~~~-g~~l~~~l~----------~~~~l~~~~~~~i~~qi~~aL~yLH~~--~gIiHrDlKP~NILl~  266 (467)
T PTZ00284        200 FQNETGHMCIVMPKY-GPCLLDWIM----------KHGPFSHRHLAQIIFQTGVALDYFHTE--LHLMHTDLKPENILME  266 (467)
T ss_pred             EEcCCceEEEEEecc-CCCHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHhc--CCeecCCCCHHHEEEe
Confidence            754   678999988 688999883          445799999999999999999999972  3699999999999998


Q ss_pred             CCC----------------cEEEecCCCccc----------------------cCCCcccccccHHHHHHHHhhCCCCch
Q 005680          476 RNL----------------VAKISGLGLNIC----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAG  517 (683)
Q Consensus       476 ~~~----------------~~KL~DFGla~~----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~  517 (683)
                      .++                .+||+|||++..                      ..++.++|||||||++|||+||++||.
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~  346 (467)
T PTZ00284        267 TSDTVVDPVTNRALPPDPCRVRICDLGGCCDERHSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYD  346 (467)
T ss_pred             cCCcccccccccccCCCCceEEECCCCccccCccccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            765                499999997632                      357889999999999999999999996


Q ss_pred             hhHHHhhhh----------H--------HHHHHHhcC---CCCCC-C--------------hhhHHHHHHHHHHhhhcCC
Q 005680          518 LVEKAMALD----------Q--------TTLMQVLDG---NAGIW-P--------------LDLAEELAGIALKCLSADQ  561 (683)
Q Consensus       518 ~~~~~~~~~----------~--------~~~~~ild~---~~~~~-p--------------~~~~~~l~~Li~~CL~~dP  561 (683)
                      .........          .        .....+.+.   ..... +              ....+.+.+||.+||.+| 
T Consensus       347 ~~~~~~~~~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~d-  425 (467)
T PTZ00284        347 THDNLEHLHLMEKTLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYD-  425 (467)
T ss_pred             CCChHHHHHHHHHHcCCCCHHHHhhccchhHHHHhhhcccccccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcC-
Confidence            422110000          0        000000000   00000 0              012356789999999999 


Q ss_pred             CccccccHHHHHHH
Q 005680          562 DANRDLRIAGVMKE  575 (683)
Q Consensus       562 ~p~~RPs~~eVl~~  575 (683)
                       |.+|||+.+++..
T Consensus       426 -P~~R~ta~e~L~H  438 (467)
T PTZ00284        426 -RQKRLNARQMTTH  438 (467)
T ss_pred             -hhhCCCHHHHhcC
Confidence             8899999999863

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.97  E-value=1.6e-31  Score=280.52  Aligned_cols=205  Identities=24%  Similarity=0.304  Sum_probs=170.9

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      .+.+|.|+||.||++..  ++..||+|++...     .....+.+|+.++++++||||+++++++.+  ..++||||+++
T Consensus         6 ~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~   85 (290)
T cd05580           6 IKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVMEYVPG   85 (290)
T ss_pred             EEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEEecCCC
Confidence            35678999999999998  5799999998621     234568899999999999999999999866  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      ++|.+++.          ....+++..+..++.||+.||.|||+   .+|+|+||+|+|||++.++.+||+|||++..  
T Consensus        86 ~~L~~~~~----------~~~~l~~~~~~~~~~qil~~l~~lH~---~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~  152 (290)
T cd05580          86 GELFSHLR----------KSGRFPEPVARFYAAQVVLALEYLHS---LDIVYRDLKPENLLLDSDGYIKITDFGFAKRVK  152 (290)
T ss_pred             CCHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEECCCCCEEEeeCCCccccC
Confidence            99999993          44678999999999999999999999   6799999999999999999999999998753  


Q ss_pred             --------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHH
Q 005680          491 --------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELA  550 (683)
Q Consensus       491 --------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~  550 (683)
                                          ..++.++||||||+++|+|++|..||.....     ......+. ......|...+..+.
T Consensus       153 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~l~  226 (290)
T cd05580         153 GRTYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNP-----IQIYEKIL-EGKVRFPSFFSPDAK  226 (290)
T ss_pred             CCCCCCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHHh-cCCccCCccCCHHHH
Confidence                                2346789999999999999999999864321     11122222 223345666788999


Q ss_pred             HHHHHhhhcCCCccccc
Q 005680          551 GIALKCLSADQDANRDL  567 (683)
Q Consensus       551 ~Li~~CL~~dP~p~~RP  567 (683)
                      +++.+||..|  |..|+
T Consensus       227 ~li~~~l~~~--p~~R~  241 (290)
T cd05580         227 DLIRNLLQVD--LTKRL  241 (290)
T ss_pred             HHHHHHccCC--HHHcc
Confidence            9999999999  77998

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.97  E-value=6.1e-32  Score=285.27  Aligned_cols=212  Identities=19%  Similarity=0.269  Sum_probs=172.8

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCC--CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCch
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNN--GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLR  416 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~--~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~  416 (683)
                      +.+|.|+||.||+|..  +|..||||.+..  ....+.+.+|+.+++.++||||++++++|..  ..++||||+++++|.
T Consensus        25 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~  104 (297)
T cd06656          25 EKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLT  104 (297)
T ss_pred             eeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeecccCCCCHH
Confidence            4568999999999997  689999999873  2234668899999999999999999999865  789999999999999


Q ss_pred             hhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc------
Q 005680          417 DKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC------  490 (683)
Q Consensus       417 ~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~------  490 (683)
                      +++.           ...+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.++|+|||++..      
T Consensus       105 ~~~~-----------~~~~~~~~~~~~~~~l~~~L~~LH~---~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~  170 (297)
T cd06656         105 DVVT-----------ETCMDEGQIAAVCRECLQALDFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS  170 (297)
T ss_pred             HHHH-----------hCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEECcCccceEccCCcc
Confidence            9983           2357899999999999999999999   6799999999999999999999999998642      


Q ss_pred             -------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhc-C-CCCCCChhhHHHH
Q 005680          491 -------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLD-G-NAGIWPLDLAEEL  549 (683)
Q Consensus       491 -------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild-~-~~~~~p~~~~~~l  549 (683)
                                         ..++.++|||||||++|+|++|.+||......     .....+.. . .....|..++..+
T Consensus       171 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  245 (297)
T cd06656         171 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPL-----RALYLIATNGTPELQNPERLSAVF  245 (297)
T ss_pred             CcCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcc-----hheeeeccCCCCCCCCccccCHHH
Confidence                               23567899999999999999999999642211     00001111 1 1122345677889


Q ss_pred             HHHHHHhhhcCCCccccccHHHHHHH
Q 005680          550 AGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       550 ~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .+++.+||..+  |..||++.+++..
T Consensus       246 ~~li~~~l~~~--p~~Rps~~~il~~  269 (297)
T cd06656         246 RDFLNRCLEMD--VDRRGSAKELLQH  269 (297)
T ss_pred             HHHHHHHccCC--hhhCcCHHHHhcC
Confidence            99999999999  7799999998763

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.97  E-value=9.1e-32  Score=289.46  Aligned_cols=221  Identities=17%  Similarity=0.256  Sum_probs=169.0

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc--------
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--------  401 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--------  401 (683)
                      ++|.. .+.+|.|+||.||+|..  ++..||||++....    ....+.+|+.+|+.++||||+++++++..        
T Consensus        15 ~~y~~-~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   93 (343)
T cd07878          15 ERYQN-LTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIENFN   93 (343)
T ss_pred             hhhhh-heecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccccccC
Confidence            44443 35678999999999987  57899999987322    23567789999999999999999998742        


Q ss_pred             ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEE
Q 005680          402 LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAK  481 (683)
Q Consensus       402 ~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~K  481 (683)
                      ..|++++++ +++|.+++.           ...+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++.+|
T Consensus        94 ~~~~~~~~~-~~~l~~~~~-----------~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivHrdikp~Nil~~~~~~~k  158 (343)
T cd07878          94 EVYLVTNLM-GADLNNIVK-----------CQKLSDEHVQFLIYQLLRGLKYIHS---AGIIHRDLKPSNVAVNEDCELR  158 (343)
T ss_pred             cEEEEeecC-CCCHHHHHh-----------cCCCCHHHHHHHHHHHHHHHHHHHH---CCeecccCChhhEEECCCCCEE
Confidence            468999988 789988772           3458999999999999999999999   6799999999999999999999


Q ss_pred             EecCCCccc-----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhh----------hHH
Q 005680          482 ISGLGLNIC-----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMAL----------DQT  528 (683)
Q Consensus       482 L~DFGla~~-----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~----------~~~  528 (683)
                      |+|||+++.                       ..++.++|||||||++|+|++|++||.........          ...
T Consensus       159 l~Dfg~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~  238 (343)
T cd07878         159 ILDFGLARQADDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGNDYIDQLKRIMEVVGTPSPE  238 (343)
T ss_pred             EcCCccceecCCCcCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCCHH
Confidence            999998753                       23677899999999999999999998532210000          000


Q ss_pred             HH--------HHHhcCCCCCCC--------hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          529 TL--------MQVLDGNAGIWP--------LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       529 ~~--------~~ild~~~~~~p--------~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ..        ...+.. .+..+        ...++.+.+|+.+||..|  |.+|||+.+++..
T Consensus       239 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~li~~mL~~d--p~~R~s~~ell~h  298 (343)
T cd07878         239 VLKKISSEHARKYIQS-LPHMPQQDLKKIFRGANPLAIDLLEKMLVLD--SDKRISASEALAH  298 (343)
T ss_pred             HHHhcchhhHHHHhhc-cccccchhHHHhccCCCHHHHHHHHHHcCCC--hhhCCCHHHHhcC
Confidence            00        000000 00111        123456889999999999  8899999998864

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.97  E-value=1.8e-31  Score=276.34  Aligned_cols=212  Identities=19%  Similarity=0.309  Sum_probs=171.3

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCCC------------CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEE
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNGL------------SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~------------~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV  406 (683)
                      +.+|.|+||.||+|..  +|..||||.+....            ..+.+..|+.+++.++||||+++++++..  ..++|
T Consensus         7 ~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   86 (272)
T cd06629           7 ELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEEYLSIF   86 (272)
T ss_pred             ceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCCceEEE
Confidence            5678999999999987  68999999875210            01357889999999999999999999865  78999


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      |||+++|+|.+++.          ....+++..+..++.||+.||.|||+   .+++||||+|+||+++.++.++|+|||
T Consensus        87 ~e~~~~~~L~~~l~----------~~~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~~~nil~~~~~~~~l~d~~  153 (272)
T cd06629          87 LEYVPGGSIGSCLR----------TYGRFEEQLVRFFTEQVLEGLAYLHS---KGILHRDLKADNLLVDADGICKISDFG  153 (272)
T ss_pred             EecCCCCcHHHHHh----------hccCCCHHHHHHHHHHHHHHHHHHhh---CCeeecCCChhhEEEcCCCeEEEeecc
Confidence            99999999999993          33578999999999999999999999   679999999999999999999999999


Q ss_pred             Cccc---------------------------c--CCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHh-cC
Q 005680          487 LNIC---------------------------D--QLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVL-DG  536 (683)
Q Consensus       487 la~~---------------------------~--~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~il-d~  536 (683)
                      ++..                           .  .++.++||||||+++|+|++|..||......     ..+..+. ..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~-----~~~~~~~~~~  228 (272)
T cd06629         154 ISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEAI-----AAMFKLGNKR  228 (272)
T ss_pred             ccccccccccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcchH-----HHHHHhhccc
Confidence            8742                           1  2577899999999999999999998642221     1111111 11


Q ss_pred             CCCCC----ChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          537 NAGIW----PLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       537 ~~~~~----p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ....+    ...++..+.+++.+||..+  |..|||+.+|+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~li~~~l~~~--p~~Rps~~~il~  268 (272)
T cd06629         229 SAPPIPPDVSMNLSPVALDFLNACFTIN--PDNRPTARELLQ  268 (272)
T ss_pred             cCCcCCccccccCCHHHHHHHHHHhcCC--hhhCCCHHHHhh
Confidence            11222    2245789999999999999  789999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.97  E-value=1.8e-31  Score=275.10  Aligned_cols=215  Identities=19%  Similarity=0.342  Sum_probs=175.0

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCCC--------CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeec
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNGL--------SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYM  410 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~--------~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~  410 (683)
                      +++|+|+||.||+|..  ++..||+|++....        ....+.+|+.++++++||||+++++++.+  ..++||||+
T Consensus         6 ~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~v~e~~   85 (268)
T cd06630           6 QQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNLFVEWM   85 (268)
T ss_pred             ceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEEEEecc
Confidence            5678999999999987  68999999987322        13578899999999999999999999976  789999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCC-cEEEecCCCcc
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL-VAKISGLGLNI  489 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~-~~KL~DFGla~  489 (683)
                      ++++|.+++.          ...++++..+..++.||+.||.|||+   .+++|+||+|+||+++.++ .+||+|||++.
T Consensus        86 ~~~~L~~~l~----------~~~~~~~~~~~~~~~ql~~al~~LH~---~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~  152 (268)
T cd06630          86 AGGSVSHLLS----------KYGAFKEAVIINYTEQLLRGLSYLHE---NQIIHRDVKGANLLIDSTGQRLRIADFGAAA  152 (268)
T ss_pred             CCCcHHHHHH----------HhCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEEccccccc
Confidence            9999999993          34578999999999999999999999   6799999999999998776 69999999863


Q ss_pred             c-----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHh-cCCCC
Q 005680          490 C-----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVL-DGNAG  539 (683)
Q Consensus       490 ~-----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~il-d~~~~  539 (683)
                      .                             ..++.++||||||+++|+|++|..||......  .......... ....+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~--~~~~~~~~~~~~~~~~  230 (268)
T cd06630         153 RLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHS--NHLALIFKIASATTAP  230 (268)
T ss_pred             ccccccccCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCc--chHHHHHHHhccCCCC
Confidence            2                             23567899999999999999999998642211  0011111211 12334


Q ss_pred             CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          540 IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       540 ~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ..|...++.+.+++.+||..+  |..||++.+++.
T Consensus       231 ~~~~~~~~~~~~~i~~~l~~~--p~~R~~~~~ll~  263 (268)
T cd06630         231 SIPEHLSPGLRDVTLRCLELQ--PEDRPPSRELLK  263 (268)
T ss_pred             CCchhhCHHHHHHHHHHcCCC--cccCcCHHHHhc
Confidence            556678899999999999999  779999999874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.97  E-value=1.4e-31  Score=290.68  Aligned_cols=222  Identities=18%  Similarity=0.221  Sum_probs=169.0

Q ss_pred             hcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc-------
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-------  401 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-------  401 (683)
                      .++|... +.+|+|+||.||+|..  .++.||||++...    .....+.+|+.+++.++||||+++++++..       
T Consensus        23 ~~~y~~~-~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~  101 (364)
T cd07875          23 LKRYQNL-KPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF  101 (364)
T ss_pred             hcceeEE-EEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeeccccccccc
Confidence            4556543 5678999999999997  5789999998732    223568899999999999999999998743       


Q ss_pred             -ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcE
Q 005680          402 -LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVA  480 (683)
Q Consensus       402 -~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~  480 (683)
                       ..|+||||++ ++|.+.+.            ..+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+
T Consensus       102 ~~~~lv~e~~~-~~l~~~~~------------~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~  165 (364)
T cd07875         102 QDVYIVMELMD-ANLCQVIQ------------MELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTL  165 (364)
T ss_pred             CeEEEEEeCCC-CCHHHHHH------------hcCCHHHHHHHHHHHHHHHHHHhh---CCeecCCCCHHHEEECCCCcE
Confidence             4699999997 57777662            237888999999999999999999   679999999999999999999


Q ss_pred             EEecCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhH---------
Q 005680          481 KISGLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQ---------  527 (683)
Q Consensus       481 KL~DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~---------  527 (683)
                      ||+|||+++.                        ..++.++|||||||++|+|++|+.||...........         
T Consensus       166 kL~DfG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~  245 (364)
T cd07875         166 KILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPC  245 (364)
T ss_pred             EEEeCCCccccCCCCcccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCC
Confidence            9999999853                        2467899999999999999999999964221100000         


Q ss_pred             --------HHHHHHhcCC-------------------CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          528 --------TTLMQVLDGN-------------------AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       528 --------~~~~~ild~~-------------------~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                              ..........                   ....+...+..+.+|+.+||+.|  |..|||+.+++..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~d--P~~R~t~~e~L~h  318 (364)
T cd07875         246 PEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVID--ASKRISVDEALQH  318 (364)
T ss_pred             HHHHHhhhHHHHHHHhhCCCcCCCChHhhCccccccccccccccccHHHHHHHHHhcCcC--cccCCCHHHHhcC
Confidence                    0000000000                   00011123457899999999999  8899999998764

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.97  E-value=1.6e-31  Score=278.71  Aligned_cols=219  Identities=21%  Similarity=0.313  Sum_probs=172.3

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCC-ccceeccccc--------ceeEEE
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPH-LVAVMGCCSE--------LKCIVF  407 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~Hpn-IV~l~g~~~~--------~~~LV~  407 (683)
                      ..+|+|+||+||+|+.  +|..||+|+++-.    .......+|+.+|..++|+| ||.+++++..        ..+||+
T Consensus        17 eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~~l~lvf   96 (323)
T KOG0594|consen   17 EKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIGKLYLVF   96 (323)
T ss_pred             HHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccceEEEEE
Confidence            3468999999999998  7899999999822    23466789999999999999 9999999854        568999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCC
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL  487 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGl  487 (683)
                      ||+. -+|.+++.....      ....++...+..++.||+.||+|||+   .+|+||||||.||||+.+|.+||+|||+
T Consensus        97 e~~d-~DL~~ymd~~~~------~~~g~~~~~ik~~m~Qll~gl~~~H~---~~IlHRDLKPQNlLi~~~G~lKlaDFGl  166 (323)
T KOG0594|consen   97 EFLD-RDLKKYMDSLPK------KPQGLPPRLIKSFMRQLLRGLAFLHS---HGILHRDLKPQNLLISSSGVLKLADFGL  166 (323)
T ss_pred             Eeec-ccHHHHHHhccc------cccCCCHHHHHHHHHHHHHHHHHHHh---CCeecccCCcceEEECCCCcEeeeccch
Confidence            9997 799999954421      11467778999999999999999999   6699999999999999999999999999


Q ss_pred             ccc--------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC-CCC-
Q 005680          488 NIC--------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG-NAG-  539 (683)
Q Consensus       488 a~~--------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~-~~~-  539 (683)
                      |+.                          ..|++..||||+|||+.||+++++-|......  ..-..+..++.. ... 
T Consensus       167 Ara~~ip~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~--~ql~~If~~lGtP~e~~  244 (323)
T KOG0594|consen  167 ARAFSIPMRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEI--DQLFRIFRLLGTPNEKD  244 (323)
T ss_pred             HHHhcCCcccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcHH--HHHHHHHHHcCCCCccC
Confidence            864                          35889999999999999999999988654331  111111111111 111 


Q ss_pred             ---------------CCC--h-------hhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          540 ---------------IWP--L-------DLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       540 ---------------~~p--~-------~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                                     .++  .       ...+...+++.+||+++  |..|.|+..++.+
T Consensus       245 Wp~v~~~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~--p~~R~Sa~~al~h  302 (323)
T KOG0594|consen  245 WPGVSSLPDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYD--PAKRISAKGALTH  302 (323)
T ss_pred             CCCccccccccccCcCCCCccchHHhccccCccHHHHHHHHhccC--cccCcCHHHHhcC
Confidence                           111  1       11247899999999999  7899999888765

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.97  E-value=1.9e-31  Score=277.66  Aligned_cols=217  Identities=20%  Similarity=0.259  Sum_probs=169.8

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      ..+|.|+||.||+|.+  +|..||+|++...    .....+.+|+.+++.++||||+++++++.+  ..++||||+++++
T Consensus         7 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~~~   86 (286)
T cd07847           7 SKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFEYCDHTV   86 (286)
T ss_pred             eeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEeccCccH
Confidence            5668999999999998  5899999998622    223567899999999999999999999866  6899999999988


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |..++          .....+++..+..++.||+.||.|||+   .+|+||||||+||+++.++.+||+|||++..    
T Consensus        87 l~~~~----------~~~~~~~~~~~~~~~~ql~~~l~~LH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~  153 (286)
T cd07847          87 LNELE----------KNPRGVPEHLIKKIIWQTLQAVNFCHK---HNCIHRDVKPENILITKQGQIKLCDFGFARILTGP  153 (286)
T ss_pred             HHHHH----------hCCCCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCChhhEEEcCCCcEEECccccceecCCC
Confidence            88877          344568999999999999999999999   6799999999999999999999999998742    


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh--HHHH-------HHHhcC---
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD--QTTL-------MQVLDG---  536 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~--~~~~-------~~ild~---  536 (683)
                                            ..++.++|||||||++|+|++|.+||..........  ....       ..+.+.   
T Consensus       154 ~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (286)
T cd07847         154 GDDYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQLYLIRKTLGDLIPRHQQIFSTNQF  233 (286)
T ss_pred             cccccCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcccccc
Confidence                                  125678999999999999999999986422210000  0000       000000   


Q ss_pred             ---CCCCC----------ChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          537 ---NAGIW----------PLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       537 ---~~~~~----------p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                         ...+.          ...++..+.+|+.+||..+  |..||++.+++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--p~~Rp~~~eil~  282 (286)
T cd07847         234 FKGLSIPEPETREPLESKFPNISSPALSFLKGCLQMD--PTERLSCEELLE  282 (286)
T ss_pred             cccccCCCcccccCHHHHhccCCHHHHHHHHHHhcCC--ccccCCHHHHhc
Confidence               00000          1235678999999999999  779999998874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.97  E-value=1.3e-31  Score=279.01  Aligned_cols=212  Identities=22%  Similarity=0.297  Sum_probs=170.2

Q ss_pred             cccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCc
Q 005680          345 KCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNL  415 (683)
Q Consensus       345 iG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL  415 (683)
                      +|.|+||.||+|..  +|+.||+|.+..     ......+..|+.+++.++||||+++++++..  ..|+||||+++++|
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDL   80 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcH
Confidence            47899999999987  589999999862     1223456789999999999999999998855  78999999999999


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-----
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-----  490 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-----  490 (683)
                      .+++...        ....+++..+..++.|++.||.|||+   .+++||||+|+||+++.++.+||+|||++..     
T Consensus        81 ~~~l~~~--------~~~~~~~~~~~~~~~ql~~~l~~lH~---~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~  149 (277)
T cd05577          81 KYHIYNV--------GEPGFPEARAIFYAAQIICGLEHLHQ---RRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGK  149 (277)
T ss_pred             HHHHHHc--------CcCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEECCCCCEEEccCcchhhhccCC
Confidence            9999533        22468999999999999999999999   6799999999999999999999999997742     


Q ss_pred             -------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHH
Q 005680          491 -------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAG  551 (683)
Q Consensus       491 -------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~  551 (683)
                                         ..++.++|||||||++|+|++|+.||......  .....+...........+...++.+.+
T Consensus       150 ~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (277)
T cd05577         150 KIKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEK--VEKEELKRRTLEMAVEYPDKFSPEAKD  227 (277)
T ss_pred             ccccccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCccc--ccHHHHHhccccccccCCccCCHHHHH
Confidence                               23567899999999999999999998643221  111112222222333455567889999


Q ss_pred             HHHHhhhcCCCccccccHHH
Q 005680          552 IALKCLSADQDANRDLRIAG  571 (683)
Q Consensus       552 Li~~CL~~dP~p~~RPs~~e  571 (683)
                      ++.+||+.|  |..||++.+
T Consensus       228 li~~~l~~~--p~~R~~~~~  245 (277)
T cd05577         228 LCEALLQKD--PEKRLGCRG  245 (277)
T ss_pred             HHHHHccCC--hhHccCCCc
Confidence            999999999  889995444

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.97  E-value=1.1e-31  Score=274.71  Aligned_cols=216  Identities=27%  Similarity=0.430  Sum_probs=172.3

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHH----HHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEE----DFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~----~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      .+.+|+|+||+||++..  ++..||+|++.......    ...+|+.++.+++||||+++++++.+  ..++||||++++
T Consensus         4 ~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~~~~   83 (260)
T PF00069_consen    4 VKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYCPGG   83 (260)
T ss_dssp             EEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEETTE
T ss_pred             eEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhccccccccccccccccccccccccccccccccc
Confidence            46789999999999999  56789999998443222    23459999999999999999999965  788999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++.          ....+++..+..++.||+.||.|||+   .+|+|+||||+||+++.++.++|+|||++..   
T Consensus        84 ~L~~~l~----------~~~~~~~~~~~~~~~qi~~~L~~Lh~---~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~  150 (260)
T PF00069_consen   84 SLQDYLQ----------KNKPLSEEEILKIAYQILEALAYLHS---KGIVHRDIKPENILLDENGEVKLIDFGSSVKLSE  150 (260)
T ss_dssp             BHHHHHH----------HHSSBBHHHHHHHHHHHHHHHHHHHH---TTEEESSBSGGGEEESTTSEEEESSGTTTEESTS
T ss_pred             ccccccc----------cccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccc
Confidence            9999994          45678999999999999999999999   6799999999999999999999999999741   


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC---CCCCCChh
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG---NAGIWPLD  544 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~---~~~~~p~~  544 (683)
                                             ..++.++||||||+++|+|++|..||......  .....+......   ........
T Consensus       151 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  228 (260)
T PF00069_consen  151 NNENFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNSD--DQLEIIEKILKRPLPSSSQQSRE  228 (260)
T ss_dssp             TTSEBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSHH--HHHHHHHHHHHTHHHHHTTSHTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccch--hhhhhhhhcccccccccccccch
Confidence                                   24678999999999999999999998764110  001111111110   00011112


Q ss_pred             hHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          545 LAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .+..+.+++.+||+.|  |..||++.++++
T Consensus       229 ~~~~l~~li~~~l~~~--p~~R~~~~~l~~  256 (260)
T PF00069_consen  229 KSEELRDLIKKMLSKD--PEQRPSAEELLK  256 (260)
T ss_dssp             SHHHHHHHHHHHSSSS--GGGSTTHHHHHT
T ss_pred             hHHHHHHHHHHHccCC--hhHCcCHHHHhc
Confidence            2489999999999999  889999999875

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.97  E-value=1.5e-31  Score=282.52  Aligned_cols=211  Identities=17%  Similarity=0.212  Sum_probs=172.1

Q ss_pred             ccccCCceEEEEEEE--CCeeEEEEEcC--CCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCchh
Q 005680          344 LKCAGDWTNVYRGRL--NHASVAIKTLN--NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRD  417 (683)
Q Consensus       344 liG~G~fG~Vykg~~--~g~~VAvK~l~--~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~  417 (683)
                      .+|.|+||.||++..  ++..||||.+.  .......+.+|+.++..++||||+++++++..  ..++||||+++++|..
T Consensus        28 ~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~~~L~~  107 (297)
T cd06659          28 KIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQGGALTD  107 (297)
T ss_pred             hcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCCCCCHHH
Confidence            568999999999987  68999999986  22334678899999999999999999998855  7899999999999998


Q ss_pred             hhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-------
Q 005680          418 KLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-------  490 (683)
Q Consensus       418 ~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-------  490 (683)
                      ++.           ...+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||++..       
T Consensus       108 ~~~-----------~~~~~~~~~~~~~~qi~~~L~~LH~---~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~~  173 (297)
T cd06659         108 IVS-----------QTRLNEEQIATVCESVLQALCYLHS---QGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPK  173 (297)
T ss_pred             HHh-----------hcCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHeEEccCCcEEEeechhHhhccccccc
Confidence            772           2458999999999999999999999   6799999999999999999999999998732       


Q ss_pred             ------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC--CCCCCChhhHHHHH
Q 005680          491 ------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG--NAGIWPLDLAEELA  550 (683)
Q Consensus       491 ------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~--~~~~~p~~~~~~l~  550 (683)
                                        ..++.++|||||||++|+|++|++||......     ..+..+...  .....+...+..+.
T Consensus       174 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~  248 (297)
T cd06659         174 RKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPV-----QAMKRLRDSPPPKLKNAHKISPVLR  248 (297)
T ss_pred             ccceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-----HHHHHHhccCCCCccccCCCCHHHH
Confidence                              24578899999999999999999998642211     111111111  11122335677899


Q ss_pred             HHHHHhhhcCCCccccccHHHHHHH
Q 005680          551 GIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       551 ~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      +++.+||+.+  |..||++.+++..
T Consensus       249 ~~i~~~l~~~--P~~Rps~~~ll~~  271 (297)
T cd06659         249 DFLERMLTRE--PQERATAQELLDH  271 (297)
T ss_pred             HHHHHHhcCC--cccCcCHHHHhhC
Confidence            9999999999  7899999998874

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.97  E-value=1.4e-31  Score=278.89  Aligned_cols=218  Identities=21%  Similarity=0.269  Sum_probs=170.5

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      .+.+|.|+||.||+|.+  ++..||+|++....    ..+.+.+|+.+++.++||||++++++|.+  ..++||||++++
T Consensus         6 ~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   85 (286)
T cd07846           6 LGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFEFVDHT   85 (286)
T ss_pred             eeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEecCCcc
Confidence            35678999999999998  47899999986221    24568899999999999999999999966  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|..+..          ....+++..+..++.||+.||.|||+   .+|+|+||+|+||+++.++.++|+|||++..   
T Consensus        86 ~l~~~~~----------~~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~  152 (286)
T cd07846          86 VLDDLEK----------YPNGLDESRVRKYLFQILRGIEFCHS---HNIIHRDIKPENILVSQSGVVKLCDFGFARTLAA  152 (286)
T ss_pred             HHHHHHh----------ccCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEECCCCcEEEEeeeeeeeccC
Confidence            9988762          33458999999999999999999999   6799999999999999999999999998642   


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhH---------HHHHHH-----
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQ---------TTLMQV-----  533 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~---------~~~~~i-----  533 (683)
                                             ..++.++|||||||++|+|++|++||...........         ......     
T Consensus       153 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (286)
T cd07846         153 PGEVYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHIIKCLGNLIPRHQEIFQKNP  232 (286)
T ss_pred             CccccCcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHhCCCchhhHHHhccch
Confidence                                   1245789999999999999999999853221000000         000000     


Q ss_pred             -hcCC-CC---------CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          534 -LDGN-AG---------IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       534 -ld~~-~~---------~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                       .... .+         ..++.++..+.+|+.+||..+  |..||++.+++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--P~~Rp~~~~il~  282 (286)
T cd07846         233 LFAGMRLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRID--PDDRPSSSQLLH  282 (286)
T ss_pred             HhhccccccccCcchHHHhCCCcCHHHHHHHHHHhcCC--cccchhHHHHhc
Confidence             0000 00         012246788999999999999  889999998875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.97  E-value=1.4e-31  Score=279.96  Aligned_cols=214  Identities=23%  Similarity=0.284  Sum_probs=167.5

Q ss_pred             ccccCCceEEEEEEE--CCeeEEEEEcCCCC-----CHHHHHHHHHHHHh---cCCCCccceeccccc--ceeEEEeecC
Q 005680          344 LKCAGDWTNVYRGRL--NHASVAIKTLNNGL-----SEEDFQAKVSFLTA---VRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       344 liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-----~~~~~~~Ev~iL~~---l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      ++|+|+||.||++..  +|..||||.+....     ....+.+|..++..   .+||||+.+++++..  ..++||||++
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN   80 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence            468999999999998  57999999886321     12234455544443   479999999998854  7899999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      +|+|.+++.          ....+++..+..|+.|++.||.|||+   .+|+||||||+|||++.++.++|+|||++.. 
T Consensus        81 ~~~L~~~i~----------~~~~l~~~~~~~i~~qi~~al~~lH~---~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~  147 (279)
T cd05633          81 GGDLHYHLS----------QHGVFSEKEMRFYATEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGLACDF  147 (279)
T ss_pred             CCCHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCcCCCCCCHHHEEECCCCCEEEccCCcceec
Confidence            999999983          44569999999999999999999999   6799999999999999999999999998732 


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHH
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAE  547 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~  547 (683)
                                             ..++.++|||||||++|+|++|..||.....   .....+...........|..++.
T Consensus       148 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  224 (279)
T cd05633         148 SKKKPHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKT---KDKHEIDRMTLTVNVELPDSFSP  224 (279)
T ss_pred             cccCccCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCC---cCHHHHHHHhhcCCcCCccccCH
Confidence                                   1357789999999999999999999964321   11111222222233345667889


Q ss_pred             HHHHHHHHhhhcCCCccccc-----cHHHHHHH
Q 005680          548 ELAGIALKCLSADQDANRDL-----RIAGVMKE  575 (683)
Q Consensus       548 ~l~~Li~~CL~~dP~p~~RP-----s~~eVl~~  575 (683)
                      .+.+++.+||..|  |.+||     |+.++++.
T Consensus       225 ~~~~li~~~l~~~--p~~R~~~~~~~~~~~~~h  255 (279)
T cd05633         225 ELKSLLEGLLQRD--VSKRLGCLGRGAQEVKEH  255 (279)
T ss_pred             HHHHHHHHHhcCC--HHHhcCCCCCCHHHHHhC
Confidence            9999999999999  88999     57776553

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.97  E-value=2.8e-31  Score=271.52  Aligned_cols=215  Identities=23%  Similarity=0.330  Sum_probs=175.8

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      .+.+|.|+||.||++..  ++..||||.+...    .....+.+|+.++++++||||+++++.+..  ..++||||++++
T Consensus         5 ~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (256)
T cd08220           5 IRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEYAPGG   84 (256)
T ss_pred             EEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEecCCCC
Confidence            35678999999999987  6789999998632    224578899999999999999999998754  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC-CcEEEecCCCccc--
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN-LVAKISGLGLNIC--  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~-~~~KL~DFGla~~--  490 (683)
                      +|.+++...        ....+++..+..++.+++.||.|||+   .+|+|+||+|+||+++.+ +.+||+|||++..  
T Consensus        85 ~L~~~~~~~--------~~~~~~~~~~~~~~~~i~~~l~~lh~---~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~  153 (256)
T cd08220          85 TLAEYIQKR--------CNSLLDEDTILHFFVQILLALHHVHT---KLILHRDLKTQNILLDKHKMVVKIGDFGISKILS  153 (256)
T ss_pred             CHHHHHHHh--------cccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEEccCCCceecC
Confidence            999999532        23468999999999999999999999   679999999999999855 5689999998742  


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE  548 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~  548 (683)
                                            ..++.++||||||+++|+|++|..||.....     ......+........+..++..
T Consensus       154 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  228 (256)
T cd08220         154 SKSKAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANL-----PALVLKIMSGTFAPISDRYSPD  228 (256)
T ss_pred             CCccccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCch-----HHHHHHHHhcCCCCCCCCcCHH
Confidence                                  2356789999999999999999999865322     1222233333334455567889


Q ss_pred             HHHHHHHhhhcCCCccccccHHHHHH
Q 005680          549 LAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +.+++.+||..+  |..|||+.+++.
T Consensus       229 l~~li~~~l~~~--p~~Rpt~~~ll~  252 (256)
T cd08220         229 LRQLILSMLNLD--PSKRPQLSQIMA  252 (256)
T ss_pred             HHHHHHHHccCC--hhhCCCHHHHhh
Confidence            999999999999  889999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.97  E-value=1.9e-31  Score=279.23  Aligned_cols=218  Identities=21%  Similarity=0.302  Sum_probs=167.2

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC---CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG---LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~---~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      .+.+|.|+||.||+|..  +++.||||.+...   .....+.+|+.+++.++||||+++++++.+  ..++||||++ ++
T Consensus        10 ~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~   88 (291)
T cd07844          10 LDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFEYLD-TD   88 (291)
T ss_pred             EEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEecCC-CC
Confidence            35678999999999998  5799999998632   123457789999999999999999999866  7899999998 59


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++..         ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++.    
T Consensus        89 L~~~~~~---------~~~~~~~~~~~~~~~ql~~al~~lH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~  156 (291)
T cd07844          89 LKQYMDD---------CGGGLSMHNVRLFLFQLLRGLAYCHQ---RRVLHRDLKPQNLLISERGELKLADFGLARAKSVP  156 (291)
T ss_pred             HHHHHHh---------CCCCCCHHHHHHHHHHHHHHHHHHHh---CCeecccCCHHHEEEcCCCCEEECccccccccCCC
Confidence            9998842         23468999999999999999999999   6799999999999999999999999998632    


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhH-----------HHHHHHhcC-
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQ-----------TTLMQVLDG-  536 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~-----------~~~~~ild~-  536 (683)
                                            ..++.++|||||||++|+|++|++||...........           .....+... 
T Consensus       157 ~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (291)
T cd07844         157 SKTYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEETWPGVSSNP  236 (291)
T ss_pred             CccccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHhcCCCChhhhhhhhhcc
Confidence                                  1256789999999999999999999954321000000           000000000 


Q ss_pred             -----CCCCC-C-------hhhH--HHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          537 -----NAGIW-P-------LDLA--EELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       537 -----~~~~~-p-------~~~~--~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                           ..... +       ..+.  ..+.+++.+||+.+  |..|||+.+++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~--p~~Rps~~e~l~  287 (291)
T cd07844         237 EFKPYSFPFYPPRPLINHAPRLDRIPHGEELALKFLQYE--PKKRISAAEAMK  287 (291)
T ss_pred             ccccccccccCChhHHHhCcCCCCchhHHHHHHHHhccC--cccccCHHHHhc
Confidence                 00000 0       0122  67889999999999  889999998864

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.7e-31  Score=277.19  Aligned_cols=213  Identities=21%  Similarity=0.332  Sum_probs=172.9

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC---CCHHHHHHHHHHHHhcC---CCCccceeccccc--ceeEEEeecC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG---LSEEDFQAKVSFLTAVR---HPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~---~~~~~~~~Ev~iL~~l~---HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      .+.+|.|+||.||+|.+  ++..||||.+...   .....+.+|+.++++++   ||||++++++|.+  ..++||||++
T Consensus         6 ~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~e~~~   85 (277)
T cd06917           6 LELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIMEYAE   85 (277)
T ss_pred             hhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEEecCC
Confidence            45678999999999998  6899999998632   23467889999999997   9999999999865  6899999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      +++|.+++.          . ..+++..+..++.+++.||.|||+   .+|+|+||+|+||+++.++.++|+|||++.. 
T Consensus        86 ~~~L~~~~~----------~-~~l~~~~~~~i~~~i~~~l~~lh~---~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~  151 (277)
T cd06917          86 GGSVRTLMK----------A-GPIAEKYISVIIREVLVALKYIHK---VGVIHRDIKAANILVTNTGNVKLCDFGVAALL  151 (277)
T ss_pred             CCcHHHHHH----------c-cCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCcCHHHEEEcCCCCEEEccCCceeec
Confidence            999999882          2 368999999999999999999999   6799999999999999999999999997632 


Q ss_pred             -------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCCh-h
Q 005680          491 -------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPL-D  544 (683)
Q Consensus       491 -------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~-~  544 (683)
                                               ..++.++|||||||++|+|++|.+||......     .....+.....+.++. .
T Consensus       152 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~  226 (277)
T cd06917         152 NQNSSKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDAF-----RAMMLIPKSKPPRLEDNG  226 (277)
T ss_pred             CCCccccccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCChh-----hhhhccccCCCCCCCccc
Confidence                                     12467899999999999999999999643221     1111111111222222 2


Q ss_pred             hHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          545 LAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .+..+.+++.+||..|  |..||++.+++..
T Consensus       227 ~~~~~~~~i~~~l~~~--p~~R~~~~~il~~  255 (277)
T cd06917         227 YSKLLREFVAACLDEE--PKERLSAEELLKS  255 (277)
T ss_pred             CCHHHHHHHHHHcCCC--cccCcCHHHHhhC
Confidence            6788999999999999  7799999999763

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.97  E-value=1.5e-31  Score=274.82  Aligned_cols=211  Identities=20%  Similarity=0.251  Sum_probs=175.0

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      .+.+|.|+||.||+|..  ++..||+|.+...     .....+.+|+.++++++||||+++++++.+  ..++|+||++|
T Consensus         5 ~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   84 (258)
T cd05578           5 LRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVDLLLG   84 (258)
T ss_pred             EEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEeCCCC
Confidence            35678999999999998  4899999998722     234678999999999999999999999866  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      ++|.+++.          ...++++..+..++.||+.||.|||+   .+++|+||+|+||+++.++.++|+|||++..  
T Consensus        85 ~~L~~~l~----------~~~~l~~~~~~~~~~~i~~~l~~lh~---~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~  151 (258)
T cd05578          85 GDLRYHLS----------QKVKFSEEQVKFWICEIVLALEYLHS---KGIIHRDIKPDNILLDEQGHVHITDFNIATKVT  151 (258)
T ss_pred             CCHHHHHH----------hcCCcCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHeEEcCCCCEEEeecccccccC
Confidence            99999993          34578999999999999999999999   6799999999999999999999999998743  


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE  548 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~  548 (683)
                                            ..++.++|+||||+++|+|++|..||......   ....+...........|...+..
T Consensus       152 ~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  228 (258)
T cd05578         152 PDTLTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRT---IRDQIRAKQETADVLYPATWSTE  228 (258)
T ss_pred             CCccccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCcc---HHHHHHHHhccccccCcccCcHH
Confidence                                  23578999999999999999999998753221   11122222222344556678899


Q ss_pred             HHHHHHHhhhcCCCccccccHH
Q 005680          549 LAGIALKCLSADQDANRDLRIA  570 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs~~  570 (683)
                      +.+++.+||..|  |..||++.
T Consensus       229 ~~~~i~~~l~~~--p~~R~~~~  248 (258)
T cd05578         229 AIDAINKLLERD--PQKRLGDN  248 (258)
T ss_pred             HHHHHHHHccCC--hhHcCCcc
Confidence            999999999999  78999983

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.97  E-value=1e-31  Score=280.03  Aligned_cols=217  Identities=16%  Similarity=0.207  Sum_probs=167.7

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      +.+|.|+||.||+|..  +|..||+|.+...    .....+.+|+.++++++||||+++++++.+  ..++|+||++ ++
T Consensus         6 ~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~   84 (284)
T cd07839           6 EKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEYCD-QD   84 (284)
T ss_pred             EEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEecCC-CC
Confidence            5678999999999998  6899999998622    223567889999999999999999999966  7899999997 57


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++..         ....+++..+..++.||+.||.|||+   .+|+||||||+||+++.++.+||+|||++..    
T Consensus        85 l~~~~~~---------~~~~~~~~~~~~~~~qi~~al~~LH~---~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~  152 (284)
T cd07839          85 LKKYFDS---------CNGDIDPEIVKSFMFQLLKGLAFCHS---HNVLHRDLKPQNLLINKNGELKLADFGLARAFGIP  152 (284)
T ss_pred             HHHHHHh---------cCCCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEEcCCCcEEECccchhhccCCC
Confidence            8887742         23568999999999999999999999   6799999999999999999999999998742    


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHh-hhh----------HHH---HHHHh
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAM-ALD----------QTT---LMQVL  534 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~-~~~----------~~~---~~~il  534 (683)
                                            ..++.++|||||||++|+|+||..|+....... ...          ...   +....
T Consensus       153 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (284)
T cd07839         153 VRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEESWPGVSKLP  232 (284)
T ss_pred             CCCcCCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHHHHHHHHHHHhCCCChHHhHHhhhcc
Confidence                                  125778999999999999999987753211100 000          000   00000


Q ss_pred             cC-CCC---------CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          535 DG-NAG---------IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       535 d~-~~~---------~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +. ...         ...+.+++.+.+++.+||..|  |.+|||+.+++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--P~~R~t~~~il~  280 (284)
T cd07839         233 DYKPYPMYPATTSLVNVVPKLNSTGRDLLQNLLVCN--PVQRISAEEALQ  280 (284)
T ss_pred             cccccCCCCCcchhhhhcccCCHHHHHHHHHHhcCC--hhhcCCHHHHhc
Confidence            00 000         011245688999999999999  889999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.97  E-value=1.8e-31  Score=290.99  Aligned_cols=217  Identities=24%  Similarity=0.328  Sum_probs=182.8

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcC-CCCccceeccccc--ceeE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVR-HPHLVAVMGCCSE--LKCI  405 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~-HpnIV~l~g~~~~--~~~L  405 (683)
                      ..++...+.+|+|.||.||+++.  +|..+|+|.+...     .+...+.+|+.+|+++. |||||.++++|.+  ..+|
T Consensus        34 ~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~l  113 (382)
T KOG0032|consen   34 KEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVYL  113 (382)
T ss_pred             cccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEEE
Confidence            34455557889999999999998  6899999999722     23468999999999998 9999999999977  7899


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC----CcEE
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN----LVAK  481 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~----~~~K  481 (683)
                      |||+|.||.|.+.|.          .. .+++..+..++.||+.|+.|||+   .+|+||||||+|+|+...    +.+|
T Consensus       114 vmEL~~GGeLfd~i~----------~~-~~sE~da~~~~~~il~av~~lH~---~gvvHrDlKpEN~L~~~~~~~~~~ik  179 (382)
T KOG0032|consen  114 VMELCEGGELFDRIV----------KK-HYSERDAAGIIRQILEAVKYLHS---LGVVHRDLKPENLLLASKDEGSGRIK  179 (382)
T ss_pred             EEEecCCchHHHHHH----------Hc-cCCHHHHHHHHHHHHHHHHHHHh---CCceeccCCHHHeeeccccCCCCcEE
Confidence            999999999999994          22 39999999999999999999999   779999999999999543    5899


Q ss_pred             EecCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC-
Q 005680          482 ISGLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG-  536 (683)
Q Consensus       482 L~DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~-  536 (683)
                      ++|||+|..                        ..|+..+||||+||++|.|++|.+||.....     ......++.. 
T Consensus       180 ~~DFGla~~~~~~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~-----~~~~~~i~~~~  254 (382)
T KOG0032|consen  180 LIDFGLAKFIKPGERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETE-----FEIFLAILRGD  254 (382)
T ss_pred             EeeCCCceEccCCceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCCh-----hHHHHHHHcCC
Confidence            999999854                        3689999999999999999999999975432     2222344443 


Q ss_pred             ---CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          537 ---NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       537 ---~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                         ..+.|+ .++..+.++|..||..|  |..|+|+.++++
T Consensus       255 ~~f~~~~w~-~is~~akd~i~~ll~~d--p~~R~ta~~~L~  292 (382)
T KOG0032|consen  255 FDFTSEPWD-DISESAKDFIRKLLEFD--PRKRLTAAQALQ  292 (382)
T ss_pred             CCCCCCCcc-ccCHHHHHHHHHhcccC--cccCCCHHHHhc
Confidence               334444 67999999999999999  789999999988

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.97  E-value=2.1e-31  Score=281.79  Aligned_cols=216  Identities=21%  Similarity=0.247  Sum_probs=173.7

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCCC-----CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      +.+|.|+||.||++..  .+..||||.+....     ....+.+|+.++..++||||+++++++.+  ..++||||++|+
T Consensus         7 ~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~g~   86 (305)
T cd05609           7 KLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVMEYVEGG   86 (305)
T ss_pred             eEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEEecCCCC
Confidence            5678999999999998  57899999987321     23467899999999999999999998865  679999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++.          ....+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||+++.   
T Consensus        87 ~L~~~l~----------~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~  153 (305)
T cd05609          87 DCATLLK----------NIGALPVDMARMYFAETVLALEYLHN---YGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLM  153 (305)
T ss_pred             cHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCchHHEEECCCCCEEEeeCCCccccCc
Confidence            9999993          34568999999999999999999999   6799999999999999999999999998641   


Q ss_pred             -------------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHH
Q 005680          491 -------------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQV  533 (683)
Q Consensus       491 -------------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~i  533 (683)
                                                           ..++.++|+|||||++|+|++|..||.....     .......
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~-----~~~~~~~  228 (305)
T cd05609         154 SLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTP-----EELFGQV  228 (305)
T ss_pred             CccccccccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHH
Confidence                                                 2356789999999999999999999864221     1112222


Q ss_pred             hcCC--CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHH
Q 005680          534 LDGN--AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDE  578 (683)
Q Consensus       534 ld~~--~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~  578 (683)
                      ....  .+..+..++..+.+++.+||+.|  |..||++..+.+.|+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~li~~~l~~~--P~~R~~~~~~~~ll~~  273 (305)
T cd05609         229 ISDDIEWPEGDEALPADAQDLISRLLRQN--PLERLGTGGAFEVKQH  273 (305)
T ss_pred             HhcccCCCCccccCCHHHHHHHHHHhccC--hhhccCccCHHHHHhC
Confidence            2211  11112256788999999999999  7899997666665543

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.97  E-value=4e-31  Score=271.25  Aligned_cols=216  Identities=22%  Similarity=0.313  Sum_probs=180.3

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCc
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNL  415 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL  415 (683)
                      +++|.|+||.||+|..  +|..||||++....   ....+.+|+.++.+++||||+++++++..  ..++||||+++++|
T Consensus         7 ~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   86 (264)
T cd06623           7 KVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEYMDGGSL   86 (264)
T ss_pred             eeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEecCCCcH
Confidence            5778999999999998  58999999987443   35679999999999999999999999866  78999999999999


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhcc-CCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS-TEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~-~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      .+++.          ....+++..+..++.|++.||.|||+ .+   ++|+||+|+||+++.++.++|+|||++..    
T Consensus        87 ~~~l~----------~~~~l~~~~~~~~~~~l~~~l~~lh~~~~---~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~  153 (264)
T cd06623          87 ADLLK----------KVGKIPEPVLAYIARQILKGLDYLHTKRH---IIHRDIKPSNLLINSKGEVKIADFGISKVLENT  153 (264)
T ss_pred             HHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHhccCC---CccCCCCHHHEEECCCCCEEEccCccceecccC
Confidence            99993          34678999999999999999999998 55   99999999999999999999999998753    


Q ss_pred             ---------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChh-hHHH
Q 005680          491 ---------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLD-LAEE  548 (683)
Q Consensus       491 ---------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~-~~~~  548 (683)
                                           ..++.++||||||+++|+|+||.+||......  ........+........+.. ++..
T Consensus       154 ~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  231 (264)
T cd06623         154 LDQCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQP--SFFELMQAICDGPPPSLPAEEFSPE  231 (264)
T ss_pred             CCcccceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccccc--CHHHHHHHHhcCCCCCCCcccCCHH
Confidence                                 23467899999999999999999998654310  11122333344444455555 7889


Q ss_pred             HHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          549 LAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      +.+++.+||..+  |..||++.+++..
T Consensus       232 l~~li~~~l~~~--p~~R~~~~~ll~~  256 (264)
T cd06623         232 FRDFISACLQKD--PKKRPSAAELLQH  256 (264)
T ss_pred             HHHHHHHHccCC--hhhCCCHHHHHhC
Confidence            999999999999  8899999999874

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.97  E-value=3.4e-31  Score=271.09  Aligned_cols=214  Identities=20%  Similarity=0.337  Sum_probs=175.7

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      +.+|.|+||.||+|..  +|..||+|.+...    .....+.+|+.+++.++||||+++++++.+  ..++|+||+++++
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   85 (257)
T cd08225           6 KKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEYCDGGD   85 (257)
T ss_pred             EEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEecCCCCc
Confidence            5678999999999998  5789999998632    334678899999999999999999999866  7899999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCC-cEEEecCCCccc---
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL-VAKISGLGLNIC---  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~-~~KL~DFGla~~---  490 (683)
                      |.+++...        ....+++..+..++.|++.||.|||+   .+++|+||||+||+++.++ .+||+|||++..   
T Consensus        86 L~~~~~~~--------~~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~  154 (257)
T cd08225          86 LMKRINRQ--------RGVLFSEDQILSWFVQISLGLKHIHD---RKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLND  154 (257)
T ss_pred             HHHHHHhc--------cCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCCHHHEEEcCCCCeEEecccccchhccC
Confidence            99999532        23458999999999999999999999   6799999999999999885 569999998632   


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE  548 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~  548 (683)
                                            ..++.++|||||||++|+|++|..||.....     ...............++..+..
T Consensus       155 ~~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  229 (257)
T cd08225         155 SMELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNNL-----HQLVLKICQGYFAPISPNFSRD  229 (257)
T ss_pred             CcccccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCccH-----HHHHHHHhcccCCCCCCCCCHH
Confidence                                  2356789999999999999999999864322     1222233333333444567789


Q ss_pred             HHHHHHHhhhcCCCccccccHHHHHH
Q 005680          549 LAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +.+++.+||..+  |..|||+.+++.
T Consensus       230 ~~~~i~~~l~~~--p~~Rpt~~~ll~  253 (257)
T cd08225         230 LRSLISQLFKVS--PRDRPSITSILK  253 (257)
T ss_pred             HHHHHHHHhccC--hhhCcCHHHHhh
Confidence            999999999999  889999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.97  E-value=2.8e-31  Score=273.41  Aligned_cols=206  Identities=20%  Similarity=0.280  Sum_probs=171.6

Q ss_pred             cccCCceEEEEEEEC--CeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCc
Q 005680          345 KCAGDWTNVYRGRLN--HASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNL  415 (683)
Q Consensus       345 iG~G~fG~Vykg~~~--g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL  415 (683)
                      +|.|+||.||+|...  +..||+|++...     .....+.+|+.+++.++||||+++++++.+  ..++||||+++++|
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGEL   80 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcH
Confidence            478999999999994  899999998632     223578999999999999999999999865  78999999999999


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-----
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-----  490 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-----  490 (683)
                      .+++.          ....+++..+..++.||+.||.|||+   .+++|+||+|+||+++.++.++|+|||++..     
T Consensus        81 ~~~l~----------~~~~l~~~~~~~~~~~i~~~l~~lH~---~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~  147 (262)
T cd05572          81 WTILR----------DRGLFDEYTARFYIACVVLAFEYLHN---RGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQ  147 (262)
T ss_pred             HHHHh----------hcCCCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCHHHEEEcCCCCEEEeeCCcccccCccc
Confidence            99993          44568999999999999999999999   6799999999999999999999999998753     


Q ss_pred             -------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhc-CCCCCCChhhHHHHH
Q 005680          491 -------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLD-GNAGIWPLDLAEELA  550 (683)
Q Consensus       491 -------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild-~~~~~~p~~~~~~l~  550 (683)
                                         ..++.++|+||||+++|+|++|..||.....   ........+.. ......|...+..+.
T Consensus       148 ~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (262)
T cd05572         148 KTWTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDE---DPMEIYNDILKGNGKLEFPNYIDKAAK  224 (262)
T ss_pred             ccccccCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCC---CHHHHHHHHhccCCCCCCCcccCHHHH
Confidence                               2356789999999999999999999975331   01122233332 344556666688999


Q ss_pred             HHHHHhhhcCCCcccccc
Q 005680          551 GIALKCLSADQDANRDLR  568 (683)
Q Consensus       551 ~Li~~CL~~dP~p~~RPs  568 (683)
                      +++.+||..+  |..||+
T Consensus       225 ~~i~~~l~~~--p~~R~~  240 (262)
T cd05572         225 DLIKQLLRRN--PEERLG  240 (262)
T ss_pred             HHHHHHccCC--hhhCcC
Confidence            9999999999  889999

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.97  E-value=2.9e-31  Score=276.07  Aligned_cols=223  Identities=20%  Similarity=0.265  Sum_probs=172.7

Q ss_pred             CccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC---CHHHHHHHHHH-HHhcCCCCccceeccccc--ceeEEEe
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL---SEEDFQAKVSF-LTAVRHPHLVAVMGCCSE--LKCIVFE  408 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~---~~~~~~~Ev~i-L~~l~HpnIV~l~g~~~~--~~~LV~E  408 (683)
                      +|... ..+|.|+||.||+|..  +|..||||++....   ....+..|+.+ ++.++||||+++++++..  ..|+|||
T Consensus         2 ~~~~~-~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e   80 (283)
T cd06617           2 DLEVI-EELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICME   80 (283)
T ss_pred             CceEE-EEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhh
Confidence            34433 4568999999999998  58999999987332   23456667765 556689999999999855  7899999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCc
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN  488 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla  488 (683)
                      |++ |+|.+++....      .....+++..+..++.||+.||.|||+.  .+++||||||+|||++.++.+||+|||++
T Consensus        81 ~~~-~~l~~~l~~~~------~~~~~~~~~~~~~~~~qi~~~l~~lH~~--~~i~h~dlkp~nil~~~~~~~kl~dfg~~  151 (283)
T cd06617          81 VMD-TSLDKFYKKVY------DKGLTIPEDILGKIAVSIVKALEYLHSK--LSVIHRDVKPSNVLINRNGQVKLCDFGIS  151 (283)
T ss_pred             hhc-ccHHHHHHHhc------cCCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCCEEEeecccc
Confidence            997 78988885432      2335799999999999999999999983  16999999999999999999999999987


Q ss_pred             cc----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCC
Q 005680          489 IC----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGI  540 (683)
Q Consensus       489 ~~----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~  540 (683)
                      ..                            ..++.++|+|||||++|+|++|+.||.....    ....+..........
T Consensus       152 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~----~~~~~~~~~~~~~~~  227 (283)
T cd06617         152 GYLVDSVAKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKT----PFQQLKQVVEEPSPQ  227 (283)
T ss_pred             cccccccccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCcccc----CHHHHHHHHhcCCCC
Confidence            42                            1246789999999999999999999863211    112222333332233


Q ss_pred             CC-hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          541 WP-LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       541 ~p-~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .| ..++..+.+++.+||..+  |..||++.+++..
T Consensus       228 ~~~~~~~~~l~~li~~~l~~~--p~~Rp~~~~il~~  261 (283)
T cd06617         228 LPAEKFSPEFQDFVNKCLKKN--YKERPNYPELLQH  261 (283)
T ss_pred             CCccccCHHHHHHHHHHccCC--hhhCcCHHHHhcC
Confidence            33 246789999999999999  7799999998763

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.97  E-value=2.9e-31  Score=271.73  Aligned_cols=211  Identities=22%  Similarity=0.319  Sum_probs=171.9

Q ss_pred             cccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCc
Q 005680          345 KCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNL  415 (683)
Q Consensus       345 iG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL  415 (683)
                      +|.|+||.||++..  +|..||+|.+...     .....+.+|+.++.+++||||+++++.+.+  ..|+||||+++++|
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDL   80 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcH
Confidence            47899999999998  4899999998732     224578899999999999999999998865  78999999999999


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-----
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-----  490 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-----  490 (683)
                      .+++.          ....+++..+..++.||+.||.|||+   .+++|+||+|+||+++.++.++|+|||++..     
T Consensus        81 ~~~l~----------~~~~~~~~~~~~i~~qi~~~L~~lH~---~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~  147 (265)
T cd05579          81 ASLLE----------NVGSLDEDVARIYIAEIVLALEYLHS---NGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRR  147 (265)
T ss_pred             HHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---cCeecCCCCHHHeEEcCCCCEEEEecccchhcccCc
Confidence            99994          33478999999999999999999999   6799999999999999999999999997642     


Q ss_pred             ----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCC
Q 005680          491 ----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWP  542 (683)
Q Consensus       491 ----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p  542 (683)
                                                  ..++.++||||||+++|+|++|..||.....     ......+.. ....+|
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~-----~~~~~~~~~-~~~~~~  221 (265)
T cd05579         148 QINLNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETP-----EEIFQNILN-GKIEWP  221 (265)
T ss_pred             ccccccccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHHhc-CCcCCC
Confidence                                        1245689999999999999999999864322     111222222 223344


Q ss_pred             hhh--HHHHHHHHHHhhhcCCCccccccHHHHHHHH
Q 005680          543 LDL--AEELAGIALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       543 ~~~--~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                      ...  +..+.+++.+||+.+  |..|||+..+.+.|
T Consensus       222 ~~~~~~~~~~~~i~~~l~~~--p~~Rpt~~~~~~~l  255 (265)
T cd05579         222 EDVEVSDEAIDLISKLLVPD--PEKRLGAKSIEEIK  255 (265)
T ss_pred             ccccCCHHHHHHHHHHhcCC--HhhcCCCccHHHHh
Confidence            444  889999999999999  88999996655544

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.97  E-value=3.5e-31  Score=278.17  Aligned_cols=216  Identities=19%  Similarity=0.269  Sum_probs=169.4

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCCC-------CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-------SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-------~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      +.+|.|+||.||+|..  +|..||||.+....       ....+..|+.++++++||||+++++++.+  ..++||||+ 
T Consensus         6 ~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~-   84 (298)
T cd07841           6 KKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLVFEFM-   84 (298)
T ss_pred             eeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEEEccc-
Confidence            4578999999999997  57899999997322       12456789999999999999999999976  789999999 


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      +|+|.+++...         ...+++..+..++.||+.||.|||+   .+|+|+||+|+|||++.++.++|+|||++.. 
T Consensus        85 ~~~L~~~i~~~---------~~~~~~~~~~~~~~qi~~al~~lH~---~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~  152 (298)
T cd07841          85 ETDLEKVIKDK---------SIVLTPADIKSYMLMTLRGLEYLHS---NWILHRDLKPNNLLIASDGVLKLADFGLARSF  152 (298)
T ss_pred             CCCHHHHHhcc---------CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCChhhEEEcCCCCEEEccceeeeec
Confidence            89999999422         1379999999999999999999999   6799999999999999999999999998742 


Q ss_pred             -------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHh-----------
Q 005680          491 -------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVL-----------  534 (683)
Q Consensus       491 -------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~il-----------  534 (683)
                                               ..++.++|||||||++|+|++|.+||.......... .......           
T Consensus       153 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  231 (298)
T cd07841         153 GSPNRKMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDSDIDQLG-KIFEALGTPTEENWPGVT  231 (298)
T ss_pred             cCCCccccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCccHHHHH-HHHHHcCCCchhhhhhcc
Confidence                                     124678999999999999999988875322110000 0000000           


Q ss_pred             ---cC----CCC-----CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          535 ---DG----NAG-----IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       535 ---d~----~~~-----~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                         +.    ...     ......+..+.+++.+||..|  |..|||+.+++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--P~~R~s~~e~l~  281 (298)
T cd07841         232 SLPDYVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLN--PNKRITARQALE  281 (298)
T ss_pred             cccccccccccCCcchhhhcccccHHHHHHHHHHhcCC--cccCcCHHHHhh
Confidence               00    000     011245678999999999999  889999999987

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.97  E-value=2.6e-31  Score=312.41  Aligned_cols=233  Identities=21%  Similarity=0.237  Sum_probs=178.7

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCCC-----CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      .+.+|+|+||.||+|..  +|+.||||++....     ....+.+|+.++++++|||||++++++.+  ..|+||||++|
T Consensus         7 i~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVMEY~eG   86 (932)
T PRK13184          7 IRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTMPYIEG   86 (932)
T ss_pred             EEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEEEcCCC
Confidence            35678999999999998  58999999987321     13578999999999999999999999865  78999999999


Q ss_pred             CCchhhhhhccccc-ccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          413 GNLRDKLFTSQRNY-KNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~-~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      |+|.+++....... ........+++..++.++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++. 
T Consensus        87 GSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs---~GIIHRDLKPeNILLd~dg~vKLiDFGLAk~i  163 (932)
T PRK13184         87 YTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHS---KGVLHRDLKPDNILLGLFGEVVILDWGAAIFK  163 (932)
T ss_pred             CCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHH---CCccccCCchheEEEcCCCCEEEEecCcceec
Confidence            99999986431100 000123457788899999999999999999   6799999999999999999999999998742 


Q ss_pred             ------------------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHH
Q 005680          491 ------------------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQT  528 (683)
Q Consensus       491 ------------------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~  528 (683)
                                                                ..++.++|||||||++|+|+||++||.........   
T Consensus       164 ~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~ki~---  240 (932)
T PRK13184        164 KLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKGRKIS---  240 (932)
T ss_pred             ccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcchhhhh---
Confidence                                                      13567899999999999999999999642211000   


Q ss_pred             HHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccc-cHHHHHHHHHHHHHh
Q 005680          529 TLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDL-RIAGVMKELDEVRKK  582 (683)
Q Consensus       529 ~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RP-s~~eVl~~L~~l~~~  582 (683)
                      ....+..+........+++.+.+++.+||..|  |..|| ++.+++..|+.+...
T Consensus       241 ~~~~i~~P~~~~p~~~iP~~L~~LI~rcL~~D--P~kR~ss~eeLl~~Le~~lq~  293 (932)
T PRK13184        241 YRDVILSPIEVAPYREIPPFLSQIAMKALAVD--PAERYSSVQELKQDLEPHLQG  293 (932)
T ss_pred             hhhhccChhhccccccCCHHHHHHHHHHccCC--hhhCcCHHHHHHHHHHHHHhc
Confidence            00111111111112356788999999999999  77895 577788888877653

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.97  E-value=5.9e-31  Score=272.03  Aligned_cols=220  Identities=22%  Similarity=0.320  Sum_probs=173.8

Q ss_pred             cccccCCceEEEEEEEC---CeeEEEEEcCCC------------CCHHHHHHHHHHHHh-cCCCCccceeccccc--cee
Q 005680          343 RLKCAGDWTNVYRGRLN---HASVAIKTLNNG------------LSEEDFQAKVSFLTA-VRHPHLVAVMGCCSE--LKC  404 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~---g~~VAvK~l~~~------------~~~~~~~~Ev~iL~~-l~HpnIV~l~g~~~~--~~~  404 (683)
                      +.+|.|+||.||+|.+.   +..||+|.+...            .....+..|+.++.+ ++||||++++++|.+  ..+
T Consensus         6 ~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~   85 (269)
T cd08528           6 EHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLENDRLY   85 (269)
T ss_pred             hhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEccCCeEE
Confidence            56789999999999983   588999987511            112457788888875 799999999999865  789


Q ss_pred             EEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEec
Q 005680          405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISG  484 (683)
Q Consensus       405 LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~D  484 (683)
                      +||||++|++|.+++....      .....+++..++.++.|++.||.|||+.  .+++|+||+|+|||++.++.+||+|
T Consensus        86 lv~e~~~~~~l~~~l~~~~------~~~~~~~~~~~~~~~~~l~~~l~~lh~~--~~i~H~dl~~~nil~~~~~~~~l~d  157 (269)
T cd08528          86 IVMDLIEGAPLGEHFNSLK------EKKQRFTEERIWNIFVQMVLALRYLHKE--KRIVHRDLTPNNIMLGEDDKVTITD  157 (269)
T ss_pred             EEEecCCCCcHHHHHHHHH------hccCCCCHHHHHHHHHHHHHHHHHhccC--CceeecCCCHHHEEECCCCcEEEec
Confidence            9999999999999985421      2345699999999999999999999962  4699999999999999999999999


Q ss_pred             CCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCC
Q 005680          485 LGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGI  540 (683)
Q Consensus       485 FGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~  540 (683)
                      ||++..                        ..++.++||||||+++|+|++|++||......     .....+......+
T Consensus       158 fg~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~~~-----~~~~~~~~~~~~~  232 (269)
T cd08528         158 FGLAKQKQPESKLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTNML-----SLATKIVEAVYEP  232 (269)
T ss_pred             ccceeecccccccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccCHH-----HHHHHHhhccCCc
Confidence            998742                        23568899999999999999999998643221     1112222222222


Q ss_pred             CC-hhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHH
Q 005680          541 WP-LDLAEELAGIALKCLSADQDANRDLRIAGVMKELD  577 (683)
Q Consensus       541 ~p-~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~  577 (683)
                      .+ ..++..+.+++.+||+.|  |..||++.+|..+|.
T Consensus       233 ~~~~~~~~~l~~li~~cl~~~--p~~Rp~~~e~~~~~~  268 (269)
T cd08528         233 LPEGMYSEDVTDVITSCLTPD--AEARPDIIQVSAMIS  268 (269)
T ss_pred             CCcccCCHHHHHHHHHHCCCC--CccCCCHHHHHHHhc
Confidence            22 246788999999999999  779999999998874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.97  E-value=5e-32  Score=271.32  Aligned_cols=212  Identities=24%  Similarity=0.372  Sum_probs=176.8

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC------CCH----HHHHHHHHHHHhc-CCCCccceeccccc--ceeEEE
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG------LSE----EDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVF  407 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~------~~~----~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~  407 (683)
                      +++|+|..++|.++..  +|..+|+|++...      ...    +.-.+|+.||+++ .||||+++.+++..  ..++|+
T Consensus        23 eilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~sF~FlVF  102 (411)
T KOG0599|consen   23 EILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESDAFVFLVF  102 (411)
T ss_pred             HHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCcchhhhhh
Confidence            5677888888888887  6899999998611      112    3456799999999 69999999999977  678999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCC
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL  487 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGl  487 (683)
                      |.|+.|.|.|+|          .....+++....+|+.|+..|+.|||.   ++||||||||+|||+|++.++||+|||+
T Consensus       103 dl~prGELFDyL----------ts~VtlSEK~tR~iMrqlfegVeylHa---~~IVHRDLKpENILlddn~~i~isDFGF  169 (411)
T KOG0599|consen  103 DLMPRGELFDYL----------TSKVTLSEKETRRIMRQLFEGVEYLHA---RNIVHRDLKPENILLDDNMNIKISDFGF  169 (411)
T ss_pred             hhcccchHHHHh----------hhheeecHHHHHHHHHHHHHHHHHHHH---hhhhhcccChhheeeccccceEEeccce
Confidence            999999999999          566789999999999999999999999   7799999999999999999999999999


Q ss_pred             ccc------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC-
Q 005680          488 NIC------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG-  536 (683)
Q Consensus       488 a~~------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~-  536 (683)
                      |..                              .+|+..+|+||+|||+|.|+.|.|||-.-...     -.+..+..+ 
T Consensus       170 a~~l~~GekLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRkQm-----lMLR~ImeGk  244 (411)
T KOG0599|consen  170 ACQLEPGEKLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRKQM-----LMLRMIMEGK  244 (411)
T ss_pred             eeccCCchhHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHHHHH-----HHHHHHHhcc
Confidence            853                              36889999999999999999999999653221     112223333 


Q ss_pred             ---CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          537 ---NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       537 ---~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                         ..+.|. +++....+||.+||+.|  |..|.|+.+++..
T Consensus       245 yqF~speWa-dis~~~KdLIsrlLqVd--p~~Ritake~LaH  283 (411)
T KOG0599|consen  245 YQFRSPEWA-DISATVKDLISRLLQVD--PTKRITAKEALAH  283 (411)
T ss_pred             cccCCcchh-hccccHHHHHHHHHeeC--chhcccHHHHhcC
Confidence               233343 68889999999999999  8899999999864

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.97  E-value=5.2e-31  Score=274.66  Aligned_cols=218  Identities=18%  Similarity=0.271  Sum_probs=168.7

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      +.+|.|+||.||+|..  +|..||||.+....    ....+.+|+.++++++||||+++++++.+  ..++||||+. ++
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~-~~   84 (284)
T cd07860           6 EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLH-QD   84 (284)
T ss_pred             eeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeeccc-cC
Confidence            4557899999999998  68899999987322    23578899999999999999999999866  7899999996 68


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |..++...        ....+++..+..++.||+.||.|||+   .+++|+||+|+||+++.++.+||+|||++..    
T Consensus        85 l~~~~~~~--------~~~~l~~~~~~~~~~~i~~~l~~lh~---~~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~  153 (284)
T cd07860          85 LKKFMDAS--------PLSGIPLPLIKSYLFQLLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP  153 (284)
T ss_pred             HHHHHHhC--------CCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEEeeccchhhcccC
Confidence            98888432        34568999999999999999999999   6799999999999999999999999998642    


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhH---------HH----HHHH--
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQ---------TT----LMQV--  533 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~---------~~----~~~i--  533 (683)
                                            ..++.++|||||||++|+|+||+.||...........         ..    ...+  
T Consensus       154 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (284)
T cd07860         154 VRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSLPD  233 (284)
T ss_pred             ccccccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhhhhHHHH
Confidence                                  1136789999999999999999999854221100000         00    0000  


Q ss_pred             ----hcC----CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          534 ----LDG----NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       534 ----ld~----~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                          ...    ......+.++..+.+++.+||+.|  |.+|||+.+++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--P~~Rpt~~~~l~  280 (284)
T cd07860         234 YKPSFPKWARQDFSKVVPPLDEDGRDLLSQMLHYD--PNKRISAKAALA  280 (284)
T ss_pred             HHhhcccccccCHHHHcccCCHHHHHHHHHhcCCC--cccCCCHHHHhc
Confidence                000    000111235678899999999999  889999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.7e-31  Score=285.36  Aligned_cols=214  Identities=19%  Similarity=0.274  Sum_probs=182.6

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcC----CCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLN----NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~----~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      ..+-+|+|.|++|-++++  +|..||||++.    +......+.+|+..|+.++|||||+||.+...  .+|||+|+-++
T Consensus        22 LekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLELGD~  101 (864)
T KOG4717|consen   22 LEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILELGDG  101 (864)
T ss_pred             hhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEEecCC
Confidence            345678999999999986  99999999997    33445789999999999999999999999855  89999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccccc-CCCcEEEecCCCccc-
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD-RNLVAKISGLGLNIC-  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld-~~~~~KL~DFGla~~-  490 (683)
                      |+|.|||.         +....+.+..+.+|+.||+.|+.|+|.   ..+|||||||+||++- .-|-+||+|||++.. 
T Consensus       102 GDl~DyIm---------KHe~Gl~E~La~kYF~QI~~AI~YCHq---LHVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf  169 (864)
T KOG4717|consen  102 GDLFDYIM---------KHEEGLNEDLAKKYFAQIVHAISYCHQ---LHVVHRDLKPENVVFFEKLGLVKLTDFGFSNKF  169 (864)
T ss_pred             chHHHHHH---------hhhccccHHHHHHHHHHHHHHHHHHhh---hhhhcccCCcceeEEeeecCceEeeeccccccC
Confidence            99999996         345679999999999999999999999   7799999999998774 558999999999743 


Q ss_pred             -----------------------cCC-CcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhH
Q 005680          491 -----------------------DQL-NVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLA  546 (683)
Q Consensus       491 -----------------------~~~-t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~  546 (683)
                                             +.| .+++||||||||||.|++|++||...     .+...+..++|- ....|..++
T Consensus       170 ~PG~kL~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeA-----NDSETLTmImDC-KYtvPshvS  243 (864)
T KOG4717|consen  170 QPGKKLTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEA-----NDSETLTMIMDC-KYTVPSHVS  243 (864)
T ss_pred             CCcchhhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccc-----cchhhhhhhhcc-cccCchhhh
Confidence                                   123 47899999999999999999999754     345566666664 345678899


Q ss_pred             HHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          547 EELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       547 ~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .+.++||..||..|  |.+|.+..+++.
T Consensus       244 ~eCrdLI~sMLvRd--PkkRAslEeI~s  269 (864)
T KOG4717|consen  244 KECRDLIQSMLVRD--PKKRASLEEIVS  269 (864)
T ss_pred             HHHHHHHHHHHhcC--chhhccHHHHhc
Confidence            99999999999999  779999777653

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=4.9e-31  Score=286.36  Aligned_cols=221  Identities=19%  Similarity=0.278  Sum_probs=166.2

Q ss_pred             hcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeec
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYM  410 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~  410 (683)
                      ..+|... +.+|.|+||.||+|..  ++..||+|+....    ....|+.++++++|||||++++++.+  ..++||||+
T Consensus        65 ~~~y~~~-~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~----~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~  139 (357)
T PHA03209         65 SLGYTVI-KTLTPGSEGRVFVATKPGQPDPVVLKIGQKG----TTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLPHY  139 (357)
T ss_pred             hcCcEEE-EEecCCCCeEEEEEEECCCCceEEEEeCCcc----ccHHHHHHHHhCCCCCCcChhheEEeCCeeEEEEEcc
Confidence            3456544 5678999999999998  4678999986532    23579999999999999999999866  678999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~  490 (683)
                      . |+|.+++.         .....+++..+..|+.||+.||.|||+   .+||||||||+|||++.++.+||+|||++..
T Consensus       140 ~-~~l~~~l~---------~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~  206 (357)
T PHA03209        140 S-SDLYTYLT---------KRSRPLPIDQALIIEKQILEGLRYLHA---QRIIHRDVKTENIFINDVDQVCIGDLGAAQF  206 (357)
T ss_pred             C-CcHHHHHH---------hccCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEEecCccccc
Confidence            5 68888884         234578999999999999999999999   6799999999999999999999999999852


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhhCC-CCchhhHH----HhhhhHHHHHHHhc---CCC
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLTGR-NWAGLVEK----AMALDQTTLMQVLD---GNA  538 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLltG~-~Pf~~~~~----~~~~~~~~~~~ild---~~~  538 (683)
                                              ..++.++|||||||++|+|+++. ++|.....    ........+..++.   ...
T Consensus       207 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  286 (357)
T PHA03209        207 PVVAPAFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTIFEDPPSTPEEYVKSCHSHLLKIISTLKVHP  286 (357)
T ss_pred             cccCcccccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCccccCCCCcHHHHHHHHHHHHHHHHHHhccCh
Confidence                                    24678999999999999999854 44332110    00000111111110   000


Q ss_pred             CCCC------------------------------hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          539 GIWP------------------------------LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       539 ~~~p------------------------------~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ..++                              ..++..+.+||.+||+.|  |.+|||+.+|+..
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~d--P~~Rpta~e~l~h  351 (357)
T PHA03209        287 EEFPRDPGSRLVRGFIEYASLERQPYTRYPCFQRVNLPIDGEFLVHKMLTFD--AAMRPSAEEILNY  351 (357)
T ss_pred             hhcCCCCccHHHHHHHhhcccCCCcccccHHHhccCCCchHHHHHHHHHcCC--cccCcCHHHHhcC
Confidence            0011                              123556778999999999  8899999998753

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=3.2e-31  Score=291.48  Aligned_cols=216  Identities=17%  Similarity=0.210  Sum_probs=167.5

Q ss_pred             cccccccCCceEEEEEEE----CCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          341 RFRLKCAGDWTNVYRGRL----NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~----~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      ..+.+|.|+||.||+|..    .+..||||.+...   ..+.+|+.+|+.++|||||++++++..  ..|+||||+. ++
T Consensus        96 i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~---~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~  171 (392)
T PHA03207         96 ILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG---KTPGREIDILKTISHRAIINLIHAYRWKSTVCMVMPKYK-CD  171 (392)
T ss_pred             EEEeecCCCCeEEEEEEEcCCccceeEEEEecccc---ccHHHHHHHHHhcCCCCccceeeeEeeCCEEEEEehhcC-CC
Confidence            345678999999999976    3478999998643   345689999999999999999998865  7899999996 68


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++          .....+++..++.|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..    
T Consensus       172 l~~~l----------~~~~~l~~~~~~~i~~ql~~aL~~LH~---~givHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~  238 (392)
T PHA03207        172 LFTYV----------DRSGPLPLEQAITIQRRLLEALAYLHG---RGIIHRDVKTENIFLDEPENAVLGDFGAACKLDAH  238 (392)
T ss_pred             HHHHH----------HhcCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEcCCCCEEEccCccccccCcc
Confidence            88888          344679999999999999999999999   6799999999999999999999999998732    


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHh---hh-----------------hH
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAM---AL-----------------DQ  527 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~---~~-----------------~~  527 (683)
                                             ..++.++|||||||++|+|++|+.||.......   ..                 ..
T Consensus       239 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~  318 (392)
T PHA03207        239 PDTPQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQNGS  318 (392)
T ss_pred             cccccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCCCCcHHHHHHHHHHhccCccccCCccc
Confidence                                   246788999999999999999999984321100   00                 00


Q ss_pred             ----HHHHHHhcCCCCCC--C-----hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          528 ----TTLMQVLDGNAGIW--P-----LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       528 ----~~~~~ild~~~~~~--p-----~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                          ..+..........+  |     ...+.++.++|.+||..|  |.+|||+.+++..
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~d--p~~Rpsa~e~l~~  375 (392)
T PHA03207        319 TNLCKHFKQYAIVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFD--QEFRPSAQDILSL  375 (392)
T ss_pred             hhHHHHHHhhcccccCCccccchhhccCcchhHHHHHHHHhccC--hhhCCCHHHHhhC
Confidence                00000100111111  1     123567889999999999  7799999999875

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.97  E-value=6.9e-31  Score=269.86  Aligned_cols=213  Identities=23%  Similarity=0.343  Sum_probs=173.4

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC-C---CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG-L---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      +.+|.|+||.||+|..  ++..||+|.+... .   ....+..|+.+++.++|+||+++++++.+  ..++|+||+++++
T Consensus         6 ~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~   85 (264)
T cd06626           6 NKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEYCSGGT   85 (264)
T ss_pred             eEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEecCCCCc
Confidence            5678999999999987  6789999998732 2   34678999999999999999999999855  7899999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++.          ....+++..+..|+.+++.||.|||+   .+|+|+||+|+||+++.++.+||+|||++..    
T Consensus        86 L~~~~~----------~~~~~~~~~~~~i~~~i~~~l~~lh~---~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~  152 (264)
T cd06626          86 LEELLE----------HGRILDEHVIRVYTLQLLEGLAYLHS---HGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNN  152 (264)
T ss_pred             HHHHHh----------hcCCCChHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEcccccccccCCC
Confidence            999993          34568899999999999999999999   6799999999999999999999999997642    


Q ss_pred             -------------------------cC---CCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCC
Q 005680          491 -------------------------DQ---LNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWP  542 (683)
Q Consensus       491 -------------------------~~---~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p  542 (683)
                                               ..   ++.++||||||+++|+|++|+.||......    ......+........|
T Consensus       153 ~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~~----~~~~~~~~~~~~~~~~  228 (264)
T cd06626         153 TTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDNE----FQIMFHVGAGHKPPIP  228 (264)
T ss_pred             CCcccccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCcch----HHHHHHHhcCCCCCCC
Confidence                                     11   567899999999999999999999643211    1111112222223333


Q ss_pred             hh--hHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          543 LD--LAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       543 ~~--~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ..  ++..+.+++.+||+.+  |..|||+.+++.
T Consensus       229 ~~~~~~~~~~~li~~~l~~~--p~~R~~~~~i~~  260 (264)
T cd06626         229 DSLQLSPEGKDFLDRCLESD--PKKRPTASELLQ  260 (264)
T ss_pred             cccccCHHHHHHHHHHccCC--cccCCCHHHHhc
Confidence            33  4788999999999999  779999998864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.97  E-value=6e-31  Score=274.88  Aligned_cols=213  Identities=23%  Similarity=0.276  Sum_probs=167.7

Q ss_pred             ccccCCceEEEEEEE--CCeeEEEEEcCCCC-----CHHHHHHHHHH---HHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          344 LKCAGDWTNVYRGRL--NHASVAIKTLNNGL-----SEEDFQAKVSF---LTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       344 liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-----~~~~~~~Ev~i---L~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      ++|+|+||.||++..  +++.||||.+....     ....+..|..+   ++...||||+.+++++.+  ..++||||++
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN   80 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence            468999999999987  57899999986321     11224444433   444579999999998865  7899999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      ||+|.+++.          ....+++..+..|+.|++.||.|||+   .+|+||||||+|||++.++.+||+|||++.. 
T Consensus        81 g~~L~~~l~----------~~~~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~di~p~nili~~~~~~kl~dfg~~~~~  147 (278)
T cd05606          81 GGDLHYHLS----------QHGVFSEAEMRFYAAEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGLACDF  147 (278)
T ss_pred             CCcHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCEEcCCCCHHHEEECCCCCEEEccCcCcccc
Confidence            999999883          44579999999999999999999999   6799999999999999999999999998742 


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHH
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAE  547 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~  547 (683)
                                             ..++.++|||||||++|+|++|+.||......   ...............+|..++.
T Consensus       148 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~  224 (278)
T cd05606         148 SKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK---DKHEIDRMTLTMAVELPDSFSP  224 (278)
T ss_pred             CccCCcCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCcc---chHHHHHHhhccCCCCCCcCCH
Confidence                                   13678899999999999999999999653211   1111222222233455666789


Q ss_pred             HHHHHHHHhhhcCCCccccc-----cHHHHHH
Q 005680          548 ELAGIALKCLSADQDANRDL-----RIAGVMK  574 (683)
Q Consensus       548 ~l~~Li~~CL~~dP~p~~RP-----s~~eVl~  574 (683)
                      .+.+++.+||..+  |..||     ++.++++
T Consensus       225 ~~~~li~~~l~~~--p~~R~~~~~~~~~~ll~  254 (278)
T cd05606         225 ELRSLLEGLLQRD--VNRRLGCLGRGAQEVKE  254 (278)
T ss_pred             HHHHHHHHHhhcC--HHhccCCCCCCHHHHHh
Confidence            9999999999999  88999     8777764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.97  E-value=5.5e-31  Score=270.71  Aligned_cols=216  Identities=22%  Similarity=0.312  Sum_probs=174.8

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC---CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG---LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~---~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      .+.+|.|+||.||+|..  ++..||+|++...   .....+.+|+.+++.++|+||+++++.+.+  ..++||||+++++
T Consensus         6 ~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~~~~~~   85 (267)
T cd06610           6 IEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPYLSGGS   85 (267)
T ss_pred             eeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEeccCCCc
Confidence            34568999999999997  6789999998632   234678999999999999999999998855  7899999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++...       .....+++..+..++.|++.||.|||+   .+|+||||+|+||++++++.++|+|||++..    
T Consensus        86 l~~~~~~~-------~~~~~~~~~~~~~~~~ql~~al~~lh~---~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~  155 (267)
T cd06610          86 LLDIMKSS-------YPRGGLDEAIIATVLKEVLKGLEYLHS---NGQIHRDIKAGNILLGEDGSVKIADFGVSASLADG  155 (267)
T ss_pred             HHHHHHHh-------cccCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHhEEEcCCCCEEEcccchHHHhccC
Confidence            99999543       123568999999999999999999999   6799999999999999999999999998631    


Q ss_pred             -------------------------c-CCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCC--
Q 005680          491 -------------------------D-QLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWP--  542 (683)
Q Consensus       491 -------------------------~-~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p--  542 (683)
                                               . .++.++|||||||++|+|++|+.||......     ..+...+......++  
T Consensus       156 ~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~  230 (267)
T cd06610         156 GDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPPM-----KVLMLTLQNDPPSLETG  230 (267)
T ss_pred             ccccccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccChh-----hhHHHHhcCCCCCcCCc
Confidence                                     1 4667899999999999999999998643221     112222222111111  


Q ss_pred             ---hhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          543 ---LDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       543 ---~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                         ..++..+.+++.+||..|  |..||++.+++.
T Consensus       231 ~~~~~~~~~~~~li~~~l~~~--p~~Rp~~~~ll~  263 (267)
T cd06610         231 ADYKKYSKSFRKMISLCLQKD--PSKRPTAEELLK  263 (267)
T ss_pred             cccccccHHHHHHHHHHcCCC--hhhCcCHHHHhh
Confidence               256788999999999999  779999999875

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.97  E-value=9.2e-31  Score=273.62  Aligned_cols=222  Identities=19%  Similarity=0.284  Sum_probs=178.8

Q ss_pred             hhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC-CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEe
Q 005680          334 ATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFE  408 (683)
Q Consensus       334 at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~E  408 (683)
                      .+++|... ..+|.|+||.||+|.+  ++..||+|++.... ....+..|+.++..++|+||+++++++..  ..|+|+|
T Consensus        17 ~~~~~~~~-~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   95 (286)
T cd06614          17 PRELYKNL-EKIGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVME   95 (286)
T ss_pred             ccccchHh-HhccCCCCeEEEEEEEccCCcEEEEEEEecCchhHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEEe
Confidence            44555443 5678999999999998  48999999997433 35678999999999999999999998854  7899999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCc
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN  488 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla  488 (683)
                      |+++++|.+++...         ...+++..+..++.+++.||.|||+   .+|+|+||+|+||+++.++.++|+|||++
T Consensus        96 ~~~~~~L~~~l~~~---------~~~l~~~~~~~i~~~i~~~L~~lH~---~gi~H~dl~p~ni~i~~~~~~~l~d~~~~  163 (286)
T cd06614          96 YMDGGSLTDIITQN---------FVRMNEPQIAYVCREVLQGLEYLHS---QNVIHRDIKSDNILLSKDGSVKLADFGFA  163 (286)
T ss_pred             ccCCCcHHHHHHHh---------ccCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCChhhEEEcCCCCEEECccchh
Confidence            99999999999432         1379999999999999999999999   77999999999999999999999999975


Q ss_pred             cc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCC--CC
Q 005680          489 IC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG--IW  541 (683)
Q Consensus       489 ~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~--~~  541 (683)
                      ..                         ..++.++|||||||++|+|++|+.||......     .....+......  ..
T Consensus       164 ~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~  238 (286)
T cd06614         164 AQLTKEKSKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPL-----RALFLITTKGIPPLKN  238 (286)
T ss_pred             hhhccchhhhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCHH-----HHHHHHHhcCCCCCcc
Confidence            32                         23577899999999999999999998643221     111112111111  12


Q ss_pred             ChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          542 PLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       542 p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      +..++..+.+++.+||+.+  |..||++.+++..
T Consensus       239 ~~~~~~~l~~li~~~l~~~--p~~Rpt~~~il~~  270 (286)
T cd06614         239 PEKWSPEFKDFLNKCLVKD--PEKRPSAEELLQH  270 (286)
T ss_pred             hhhCCHHHHHHHHHHhccC--hhhCcCHHHHhhC
Confidence            2336788999999999999  7899999999764

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.97  E-value=7.1e-31  Score=278.00  Aligned_cols=213  Identities=23%  Similarity=0.334  Sum_probs=170.9

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC--CC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG--LS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~--~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      +.+|.|+||.||+|..  +|..||+|.+...  ..   ...+.+|+.+++.++||||++++++|.+  ..++||||++ |
T Consensus        21 ~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~-g   99 (307)
T cd06607          21 REIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVMEYCL-G   99 (307)
T ss_pred             eeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEHHhhC-C
Confidence            5678999999999997  6899999998622  11   2468899999999999999999999865  7899999997 6


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++..         ....+++..+..++.||+.||.|||+   .+|+||||+|+||+++.++.+||+|||++..   
T Consensus       100 ~l~~~~~~---------~~~~l~~~~~~~~~~ql~~~L~~LH~---~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~  167 (307)
T cd06607         100 SASDILEV---------HKKPLQEVEIAAICHGALQGLAYLHS---HERIHRDIKAGNILLTEPGTVKLADFGSASLVSP  167 (307)
T ss_pred             CHHHHHHH---------cccCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCcccEEECCCCCEEEeecCcceecCC
Confidence            77777632         23468999999999999999999999   6799999999999999999999999998742   


Q ss_pred             ---------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCC-ChhhHHH
Q 005680          491 ---------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIW-PLDLAEE  548 (683)
Q Consensus       491 ---------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~-p~~~~~~  548 (683)
                                           ..++.++||||||+++|+|+||.+||......     .....+.....+.. +..++..
T Consensus       168 ~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  242 (307)
T cd06607         168 ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM-----SALYHIAQNDSPTLSSNDWSDY  242 (307)
T ss_pred             CCCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCccHH-----HHHHHHhcCCCCCCCchhhCHH
Confidence                                 23567899999999999999999998643221     11111211111122 3346788


Q ss_pred             HHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          549 LAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      +.+++.+||+.+  |..||++.+++..
T Consensus       243 ~~~li~~~l~~~--p~~Rp~~~~il~~  267 (307)
T cd06607         243 FRNFVDSCLQKI--PQDRPSSEELLKH  267 (307)
T ss_pred             HHHHHHHHhcCC--hhhCcCHHHHhcC
Confidence            999999999999  7799999999864

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.97  E-value=7.2e-31  Score=275.09  Aligned_cols=224  Identities=19%  Similarity=0.255  Sum_probs=169.1

Q ss_pred             hcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC---CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEE
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG---LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVF  407 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~---~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~  407 (683)
                      +++|... +.+|.|+||.||+|..  +|..||||.+...   .....+.+|+.+++.++|+||+++++++.+  ..|+||
T Consensus         4 ~~~y~~~-~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~   82 (291)
T cd07870           4 ATSYLNL-EKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVF   82 (291)
T ss_pred             cceeEEE-EEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEE
Confidence            4555543 5678999999999987  6889999998632   223467899999999999999999999866  689999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCC
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL  487 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGl  487 (683)
                      ||+. ++|.+++.         .....+++..+..++.||+.||.|||+   .+|+|+||||+|||++.++.+||+|||+
T Consensus        83 e~~~-~~l~~~~~---------~~~~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dlkp~Nil~~~~~~~~l~Dfg~  149 (291)
T cd07870          83 EYMH-TDLAQYMI---------QHPGGLHPYNVRLFMFQLLRGLAYIHG---QHILHRDLKPQNLLISYLGELKLADFGL  149 (291)
T ss_pred             eccc-CCHHHHHH---------hCCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChHHEEEcCCCcEEEecccc
Confidence            9996 67777763         223457888899999999999999999   6799999999999999999999999998


Q ss_pred             ccc--------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHH----------
Q 005680          488 NIC--------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLM----------  531 (683)
Q Consensus       488 a~~--------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~----------  531 (683)
                      ++.                          ..++.++|||||||++|+|+||.+||...............          
T Consensus       150 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  229 (291)
T cd07870         150 ARAKSIPSQTYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSDVFEQLEKIWTVLGVPTEDTW  229 (291)
T ss_pred             ccccCCCCCCCCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHcCCCChhhh
Confidence            742                          12466899999999999999999999643221000000000          


Q ss_pred             -HH--hcCC-----CCCCC---------hhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          532 -QV--LDGN-----AGIWP---------LDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       532 -~i--ld~~-----~~~~p---------~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                       ..  +...     ....+         ...+..+.+++.+|+..|  |..|||+.+++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~d--p~~R~t~~~~l~  287 (291)
T cd07870         230 PGVSKLPNYKPEWFLPCKPQQLRVVWKRLSRPPKAEDLASQMLMMF--PKDRISAQDALL  287 (291)
T ss_pred             hhhhhcccccchhccccCCcchhhhccccCCChHHHHHHHHHhCcC--cccCcCHHHHhc
Confidence             00  0000     00000         012567899999999999  889999998864

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=9.7e-32  Score=290.98  Aligned_cols=213  Identities=23%  Similarity=0.339  Sum_probs=176.3

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC--CC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG--LS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~--~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      ++-||.|+||.||-+++  +...||||++...  .+   -.++..||..|.+++|||+|.+-|+|..  ..|||||||- 
T Consensus        31 LrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVMEYCl-  109 (948)
T KOG0577|consen   31 LREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVMEYCL-  109 (948)
T ss_pred             HHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHHHHh-
Confidence            45668999999999998  6789999999822  11   2578999999999999999999999954  7899999996 


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      ||-.|+|.-         -..+|.+..+..|+.+.+.||+|||+   .+.||||||..||||++.|.|||+|||.|..  
T Consensus       110 GSAsDlleV---------hkKplqEvEIAAi~~gaL~gLaYLHS---~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~  177 (948)
T KOG0577|consen  110 GSASDLLEV---------HKKPLQEVEIAAITHGALQGLAYLHS---HNRIHRDIKAGNILLSEPGLVKLADFGSASIMA  177 (948)
T ss_pred             ccHHHHHHH---------HhccchHHHHHHHHHHHHHHHHHHHH---hhHHhhhccccceEecCCCeeeeccccchhhcC
Confidence            788998852         35679999999999999999999999   5699999999999999999999999998743  


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCC-ChhhHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIW-PLDLAE  547 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~-p~~~~~  547 (683)
                                            +.|+-++|||||||+..||.-.+||+.....     -..+..+.....+.. ....+.
T Consensus       178 PAnsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMNA-----MSALYHIAQNesPtLqs~eWS~  252 (948)
T KOG0577|consen  178 PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA-----MSALYHIAQNESPTLQSNEWSD  252 (948)
T ss_pred             chhcccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCchH-----HHHHHHHHhcCCCCCCCchhHH
Confidence                                  6799999999999999999999999754332     122223333322222 346889


Q ss_pred             HHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          548 ELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       548 ~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .+..++..||++-  |.+|||..++++
T Consensus       253 ~F~~Fvd~CLqKi--pqeRptse~ll~  277 (948)
T KOG0577|consen  253 YFRNFVDSCLQKI--PQERPTSEELLK  277 (948)
T ss_pred             HHHHHHHHHHhhC--cccCCcHHHHhh
Confidence            9999999999999  779999887764

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.97  E-value=7.8e-31  Score=272.98  Aligned_cols=218  Identities=20%  Similarity=0.250  Sum_probs=171.0

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      +.+|.|+||.||+|.+  +|..||||++...    .....+.+|+.++++++||||+++++++.+  ..++||||+ +++
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~-~~~   84 (286)
T cd07832           6 GRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEYM-PSD   84 (286)
T ss_pred             eecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEeccc-CCC
Confidence            4578999999999998  6899999998732    234678999999999999999999999865  789999999 999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++...         ...+++..+..++.||+.||.|||+   .+|+|+||||+||+++.++.++|+|||++..    
T Consensus        85 L~~~~~~~---------~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~  152 (286)
T cd07832          85 LSEVLRDE---------ERPLPEAQVKSYMRMLLKGVAYMHA---NGIMHRDLKPANLLISADGVLKIADFGLARLFSEE  152 (286)
T ss_pred             HHHHHHhc---------CCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCcCHHHEEEcCCCcEEEeeeeecccccCC
Confidence            99998532         3569999999999999999999999   6799999999999999999999999997642    


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh----------HHHHH------
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD----------QTTLM------  531 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~----------~~~~~------  531 (683)
                                             ..++.++|||||||++|+|+||.+||..........          .....      
T Consensus       153 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (286)
T cd07832         153 EPRLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGENDIEQLAIVFRTLGTPNEETWPGLTSLP  232 (286)
T ss_pred             CCCccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCHHHHHHHHHHHcCCCChHHHhhccCcc
Confidence                                   124678999999999999999988885422110000          00000      


Q ss_pred             ---HHhcCCCC-----CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          532 ---QVLDGNAG-----IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       532 ---~ild~~~~-----~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                         .+......     ...+..+..+.+++.+||..+  |.+|||+.+++..
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--p~~R~~~~~~l~h  282 (286)
T cd07832         233 DYNKITFPESKPIPLEEIFPDASPEALDLLKGLLVYD--PSKRLSAAEALRH  282 (286)
T ss_pred             hhhcccCCCCCcchHHHhCCCccHHHHHHHHHHhccC--hhhCCCHHHHhhC
Confidence               00000000     011245688999999999999  8899999998753

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.97  E-value=9.3e-31  Score=274.41  Aligned_cols=212  Identities=18%  Similarity=0.218  Sum_probs=172.2

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC--CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCc
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG--LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNL  415 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~--~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL  415 (683)
                      .+.+|.|++|.||++..  ++..||+|++...  .....+.+|+.+++.++||||+++++++..  ..++|+||+++++|
T Consensus        24 ~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~~~~L  103 (285)
T cd06648          24 FVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLEGGAL  103 (285)
T ss_pred             ceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccCCCCH
Confidence            35778999999999987  5789999998622  234568899999999999999999998754  78999999999999


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-----
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-----  490 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-----  490 (683)
                      .+++.          . ..+++..+..++.|++.||.|||+   .+|+||||+|+||+++.++.++|+|||++..     
T Consensus       104 ~~~~~----------~-~~~~~~~~~~~~~ql~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~  169 (285)
T cd06648         104 TDIVT----------H-TRMNEEQIATVCLAVLKALSFLHA---QGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEV  169 (285)
T ss_pred             HHHHH----------h-CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCChhhEEEcCCCcEEEcccccchhhccCC
Confidence            99983          2 468999999999999999999999   6799999999999999999999999997632     


Q ss_pred             --------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC--CCCCCChhhHHH
Q 005680          491 --------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG--NAGIWPLDLAEE  548 (683)
Q Consensus       491 --------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~--~~~~~p~~~~~~  548 (683)
                                          ..++.++|||||||++|+|++|.+||......     .....+...  .....+..++..
T Consensus       170 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  244 (285)
T cd06648         170 PRRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPPL-----QAMKRIRDNLPPKLKNLHKVSPR  244 (285)
T ss_pred             cccccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCHH-----HHHHHHHhcCCCCCcccccCCHH
Confidence                                23678899999999999999999998542211     111111111  111223346789


Q ss_pred             HHHHHHHhhhcCCCccccccHHHHHH
Q 005680          549 LAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +.+++.+||..+  |..||++.+++.
T Consensus       245 l~~li~~~l~~~--p~~Rpt~~~il~  268 (285)
T cd06648         245 LRSFLDRMLVRD--PAQRATAAELLN  268 (285)
T ss_pred             HHHHHHHHcccC--hhhCcCHHHHcc
Confidence            999999999999  789999988875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=5.7e-31  Score=270.81  Aligned_cols=213  Identities=19%  Similarity=0.210  Sum_probs=166.2

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCCC-----CHHHHHHHHHHH-HhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-----SEEDFQAKVSFL-TAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-----~~~~~~~Ev~iL-~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      +.+|.|+||.||+|..  +|..||||++....     ....+..|..++ ...+||||+++++++.+  ..|+||||+++
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   81 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG   81 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC
Confidence            3568999999999998  67899999986321     112344555444 44589999999999865  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      ++|.+++.          ....+++..+..++.||+.||.|||+   .+++|+||+|+||+++.++.+||+|||++..  
T Consensus        82 ~~L~~~l~----------~~~~~~~~~~~~i~~qi~~aL~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  148 (260)
T cd05611          82 GDCASLIK----------TLGGLPEDWAKQYIAEVVLGVEDLHQ---RGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGL  148 (260)
T ss_pred             CCHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCcEEEeecccceecc
Confidence            99999993          44568999999999999999999999   6799999999999999999999999998743  


Q ss_pred             -------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC---CCCCCChhhHHH
Q 005680          491 -------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG---NAGIWPLDLAEE  548 (683)
Q Consensus       491 -------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~---~~~~~p~~~~~~  548 (683)
                                         ..++.++||||||+++|+|++|.+||......     .....+...   .....+..++..
T Consensus       149 ~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  223 (260)
T cd05611         149 ENKKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPD-----AVFDNILSRRINWPEEVKEFCSPE  223 (260)
T ss_pred             ccccCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCHH-----HHHHHHHhcccCCCCcccccCCHH
Confidence                               23578999999999999999999999643221     111111111   111222356789


Q ss_pred             HHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          549 LAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      +.+++.+||+.+  |..||++..+.+.
T Consensus       224 ~~~~i~~~l~~~--p~~R~~~~~~~~~  248 (260)
T cd05611         224 AVDLINRLLCMD--PAKRLGANGYQEI  248 (260)
T ss_pred             HHHHHHHHccCC--HHHccCCCcHHHH
Confidence            999999999999  8899987655443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.97  E-value=1.3e-30  Score=273.26  Aligned_cols=225  Identities=18%  Similarity=0.224  Sum_probs=170.6

Q ss_pred             CccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcC-CCCccceeccccc--c-----
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVR-HPHLVAVMGCCSE--L-----  402 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~-HpnIV~l~g~~~~--~-----  402 (683)
                      +|... +.+|.|+||.||+|.+  +|..||||.+....    ....+.+|+.+++.+. ||||+++++++..  .     
T Consensus         2 ~y~~~-~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~   80 (295)
T cd07837           2 AYEKL-EKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPS   80 (295)
T ss_pred             CceEe-eEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCce
Confidence            34433 5678999999999998  68999999986221    2357888999999995 6999999998854  3     


Q ss_pred             eeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC-CCcEE
Q 005680          403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR-NLVAK  481 (683)
Q Consensus       403 ~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~-~~~~K  481 (683)
                      .|+||||+++ +|.+++.....     .....+++..+..++.||+.||.|||+   .+|+||||+|+||+++. ++.+|
T Consensus        81 ~~lv~e~~~~-~l~~~~~~~~~-----~~~~~~~~~~~~~~~~qi~~~L~~LH~---~~i~H~dl~~~nil~~~~~~~~k  151 (295)
T cd07837          81 LYLVFEYLDS-DLKKFMDSNGR-----GPGRPLPAKTIKSFMYQLLKGVAHCHK---HGVMHRDLKPQNLLVDKQKGLLK  151 (295)
T ss_pred             EEEEeeccCc-CHHHHHHHhcc-----cCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCChHHEEEecCCCeEE
Confidence            6999999985 89888854321     123568999999999999999999999   77999999999999998 89999


Q ss_pred             EecCCCccc--------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhc
Q 005680          482 ISGLGLNIC--------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLD  535 (683)
Q Consensus       482 L~DFGla~~--------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild  535 (683)
                      |+|||++..                          ..++.++||||||+++|+|++|.+||......... ......+..
T Consensus       152 l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~-~~~~~~~~~  230 (295)
T cd07837         152 IADLGLGRAFSIPVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQL-LHIFKLLGT  230 (295)
T ss_pred             EeecccceecCCCccccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCHHHHH-HHHHHHhCC
Confidence            999998642                          13577899999999999999999998643221000 000000000


Q ss_pred             CCC---------------C--------CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          536 GNA---------------G--------IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       536 ~~~---------------~--------~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +..               +        ...+.++..+.++|.+||..|  |..||++.+++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~--P~~R~~~~eil~  290 (295)
T cd07837         231 PTEQVWPGVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYD--PAKRISAKAALT  290 (295)
T ss_pred             CChhhCcchhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCC--hhhcCCHHHHhc
Confidence            000               0        001246788999999999999  889999998874

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.3e-30  Score=276.63  Aligned_cols=213  Identities=24%  Similarity=0.312  Sum_probs=172.5

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCCC-----CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      +.+|.|+||.||+|..  ++..||||.+....     ....+..|+.++..++||||+++++++.+  ..|+||||+.++
T Consensus         7 ~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~   86 (316)
T cd05574           7 KLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVMDYCPGG   86 (316)
T ss_pred             eeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEEEecCCC
Confidence            5678999999999998  57999999987332     23568899999999999999999999865  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++...        ....+++..+..++.||+.||.|||+   .+++|+||||+||+++.++.++|+|||++..   
T Consensus        87 ~L~~~~~~~--------~~~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~  155 (316)
T cd05574          87 ELFRLLQRQ--------PGKCLSEEVARFYAAEVLLALEYLHL---LGIVYRDLKPENILLHESGHIMLSDFDLSKQSDV  155 (316)
T ss_pred             CHHHHHHhC--------CCCccCHHHHHHHHHHHHHHHHHHHH---CCeeccCCChHHeEEcCCCCEEEeecchhhcccc
Confidence            999998422        23578999999999999999999999   6799999999999999999999999998642   


Q ss_pred             ---------------------------------------------------cCCCcccccccHHHHHHHHhhCCCCchhh
Q 005680          491 ---------------------------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLV  519 (683)
Q Consensus       491 ---------------------------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~  519 (683)
                                                                         ..++.++||||||+++|+|++|..||...
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~  235 (316)
T cd05574         156 EPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGS  235 (316)
T ss_pred             cccccccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCC
Confidence                                                               12456899999999999999999999643


Q ss_pred             HHHhhhhHHHHHHHhcCCCCCCCh--hhHHHHHHHHHHhhhcCCCcccccc----HHHHHH
Q 005680          520 EKAMALDQTTLMQVLDGNAGIWPL--DLAEELAGIALKCLSADQDANRDLR----IAGVMK  574 (683)
Q Consensus       520 ~~~~~~~~~~~~~ild~~~~~~p~--~~~~~l~~Li~~CL~~dP~p~~RPs----~~eVl~  574 (683)
                      ..     ...+..+.... ..++.  ..+..+.+++.+||+.|  |..|||    +.+++.
T Consensus       236 ~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~--p~~R~s~~~~~~~ll~  288 (316)
T cd05574         236 NR-----DETFSNILKKE-VTFPGSPPVSSSARDLIRKLLVKD--PSKRLGSKRGAAEIKQ  288 (316)
T ss_pred             ch-----HHHHHHHhcCC-ccCCCccccCHHHHHHHHHHccCC--HhHCCCchhhHHHHHc
Confidence            22     12222333321 22222  26889999999999999  889999    555544

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=9.5e-32  Score=295.45  Aligned_cols=223  Identities=21%  Similarity=0.310  Sum_probs=180.9

Q ss_pred             hcCccccccccccCCceEEEEEEE--CCeeEEEEEcC------CCCCHHHHHHHHHHHHhcCCCCccceeccccc----c
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN------NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE----L  402 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~------~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----~  402 (683)
                      +..|..-..++|+|+|-+||+|.+  +|..||--.++      .....+.|..|+.+|+.|+|||||++|.+|.+    .
T Consensus        38 ~gRy~k~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~  117 (632)
T KOG0584|consen   38 TGRYLKFDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKT  117 (632)
T ss_pred             CCceeehhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCce
Confidence            344444456789999999999998  57777654333      33344789999999999999999999999976    4


Q ss_pred             eeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC-CcEE
Q 005680          403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN-LVAK  481 (683)
Q Consensus       403 ~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~-~~~K  481 (683)
                      ..+|+|++..|+|..|+          +....++...+..|+.||+.||.|||++. +||||||||.+||+|+.+ |.+|
T Consensus       118 in~iTEL~TSGtLr~Y~----------kk~~~vn~kaik~W~RQILkGL~yLHs~~-PPIIHRDLKCDNIFinG~~G~VK  186 (632)
T KOG0584|consen  118 INFITELFTSGTLREYR----------KKHRRVNIKAIKSWCRQILKGLVYLHSQD-PPIIHRDLKCDNIFVNGNLGEVK  186 (632)
T ss_pred             eeeeeecccCCcHHHHH----------HHhccCCHHHHHHHHHHHHHHhhhhhcCC-CCccccccccceEEEcCCcCcee
Confidence            67899999999999999          45677888999999999999999999998 689999999999999765 8999


Q ss_pred             EecCCCccc----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCC
Q 005680          482 ISGLGLNIC----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG  539 (683)
Q Consensus       482 L~DFGla~~----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~  539 (683)
                      |+|+|||..                      ..|+..+||||||+.++||+|+..||.....    ....+..+..+..+
T Consensus       187 IGDLGLAtl~r~s~aksvIGTPEFMAPEmYEE~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n----~AQIYKKV~SGiKP  262 (632)
T KOG0584|consen  187 IGDLGLATLLRKSHAKSVIGTPEFMAPEMYEENYNELVDVYAFGMCMLEMVTSEYPYSECTN----PAQIYKKVTSGIKP  262 (632)
T ss_pred             ecchhHHHHhhccccceeccCccccChHHHhhhcchhhhhhhhhHHHHHHHhccCChhhhCC----HHHHHHHHHcCCCH
Confidence            999999854                      4689999999999999999999999975443    23344455554332


Q ss_pred             C-CChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          540 I-WPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       540 ~-~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      . +...-.+++++||.+||..-   ..|||+.|+|..
T Consensus       263 ~sl~kV~dPevr~fIekCl~~~---~~R~sa~eLL~d  296 (632)
T KOG0584|consen  263 AALSKVKDPEVREFIEKCLATK---SERLSAKELLKD  296 (632)
T ss_pred             HHhhccCCHHHHHHHHHHhcCc---hhccCHHHHhhC
Confidence            2 11122578999999999873   689999999864

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.6e-30  Score=268.58  Aligned_cols=212  Identities=19%  Similarity=0.302  Sum_probs=173.3

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC-------CCHHHHHHHHHHHHhcCCCCccceeccccc----ceeEEEe
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-------LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE----LKCIVFE  408 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-------~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----~~~LV~E  408 (683)
                      .+++|.|+||.||+|..  ++..||+|.+...       .....+.+|+.++++++||||+++++++.+    ..++|+|
T Consensus         7 ~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~v~e   86 (264)
T cd06653           7 GKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKLSIFVE   86 (264)
T ss_pred             eeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEEEEEEE
Confidence            35778999999999997  6899999987521       112468899999999999999999998854    4789999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCc
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN  488 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla  488 (683)
                      |+++++|.+++.          ....+++..+..++.||+.||.|||+   .+|+|+||||+||+++.++.++|+|||++
T Consensus        87 ~~~~~~L~~~~~----------~~~~l~~~~~~~~~~~i~~al~~LH~---~~i~H~dl~p~ni~i~~~~~~~l~dfg~~  153 (264)
T cd06653          87 YMPGGSIKDQLK----------AYGALTENVTRRYTRQILQGVSYLHS---NMIVHRDIKGANILRDSAGNVKLGDFGAS  153 (264)
T ss_pred             eCCCCcHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEcCCCCEEECccccc
Confidence            999999999983          33568899999999999999999999   67999999999999999999999999987


Q ss_pred             cc----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHh-cCCCC
Q 005680          489 IC----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVL-DGNAG  539 (683)
Q Consensus       489 ~~----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~il-d~~~~  539 (683)
                      ..                            ..++.++|||||||++|+|++|++||......     ....... .+...
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-----~~~~~~~~~~~~~  228 (264)
T cd06653         154 KRIQTICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEYEAM-----AAIFKIATQPTKP  228 (264)
T ss_pred             cccccccccCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCccCHH-----HHHHHHHcCCCCC
Confidence            42                            12467899999999999999999999753221     1122222 23345


Q ss_pred             CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          540 IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       540 ~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ..|..+++.+.+++.+||. +  |..||++.+++.
T Consensus       229 ~~p~~~~~~~~~~i~~~l~-~--~~~r~~~~~~~~  260 (264)
T cd06653         229 MLPDGVSDACRDFLKQIFV-E--EKRRPTAEFLLR  260 (264)
T ss_pred             CCCcccCHHHHHHHHHHhc-C--cccCccHHHHhc
Confidence            5677888999999999998 4  568999887764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.97  E-value=2.2e-30  Score=262.15  Aligned_cols=213  Identities=23%  Similarity=0.368  Sum_probs=174.1

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCCC--CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCch
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNGL--SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLR  416 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~--~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~  416 (683)
                      +.+|.|++|.||++..  ++..|++|++....  ....+.+|+.+++.++||||+++++++..  ..++++||+++++|.
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~   85 (253)
T cd05122           6 EKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCSGGSLK   85 (253)
T ss_pred             eeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCCCCcHH
Confidence            4567899999999998  48899999997444  45789999999999999999999998855  789999999999999


Q ss_pred             hhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc------
Q 005680          417 DKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC------  490 (683)
Q Consensus       417 ~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~------  490 (683)
                      +++...         ...+++..+..++.+++.||.|||.   .+++||||+|+||+++.++.++|+|||.+..      
T Consensus        86 ~~~~~~---------~~~~~~~~~~~i~~~i~~~l~~lh~---~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~  153 (253)
T cd05122          86 DLLKST---------NQTLTESQIAYVCKELLKGLEYLHS---NGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKA  153 (253)
T ss_pred             HHHhhc---------CCCCCHHHHHHHHHHHHHHHHHhhc---CCEecCCCCHHHEEEccCCeEEEeecccccccccccc
Confidence            998422         2578999999999999999999999   6799999999999999999999999998743      


Q ss_pred             ------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCC--CCCChhhHHHHH
Q 005680          491 ------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNA--GIWPLDLAEELA  550 (683)
Q Consensus       491 ------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~--~~~p~~~~~~l~  550 (683)
                                        ..++.++||||||+++|+|++|.+||......     ...........  ...+..++..+.
T Consensus       154 ~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  228 (253)
T cd05122         154 RNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPPM-----KALFKIATNGPPGLRNPEKWSDEFK  228 (253)
T ss_pred             ccceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCchH-----HHHHHHHhcCCCCcCcccccCHHHH
Confidence                              12467899999999999999999998653221     11111111111  122223478899


Q ss_pred             HHHHHhhhcCCCccccccHHHHHH
Q 005680          551 GIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       551 ~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +++.+||..|  |..|||+.+++.
T Consensus       229 ~~i~~~l~~~--p~~R~t~~~~l~  250 (253)
T cd05122         229 DFLKKCLQKN--PEKRPTAEQLLK  250 (253)
T ss_pred             HHHHHHccCC--hhhCCCHHHHhc
Confidence            9999999999  789999999875

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.97  E-value=2.8e-32  Score=269.66  Aligned_cols=212  Identities=21%  Similarity=0.321  Sum_probs=176.5

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcC----CCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLN----NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~----~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      ...+|+|.|+.||++..  +|+.+|+|+++    ...+-+.+.+|+.|...|+|||||++.....+  ..|||+|+|.||
T Consensus        16 ~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvFe~m~G~   95 (355)
T KOG0033|consen   16 KEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGG   95 (355)
T ss_pred             HHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEEecccch
Confidence            35678999999999987  78999999887    33456789999999999999999999998866  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC---CCcEEEecCCCccc
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR---NLVAKISGLGLNIC  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~---~~~~KL~DFGla~~  490 (683)
                      +|..-|          -.+..+++..+-.++.||+.||.|+|.   .+|||||+||.|+||.+   ...+||+|||+|..
T Consensus        96 dl~~eI----------V~R~~ySEa~aSH~~rQiLeal~yCH~---n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~  162 (355)
T KOG0033|consen   96 ELFEDI----------VAREFYSEADASHCIQQILEALAYCHS---NGIVHRDLKPENLLLASKAKGAAVKLADFGLAIE  162 (355)
T ss_pred             HHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHh---cCceeccCChhheeeeeccCCCceeecccceEEE
Confidence            998777          344678999999999999999999999   66999999999999954   35699999999853


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC----CCCCCC
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG----NAGIWP  542 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~----~~~~~p  542 (683)
                                              ..|+..+|||+.|||||-|+.|.+||.....     ...+..+..+    ..+.|+
T Consensus       163 l~~g~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~-----~rlye~I~~g~yd~~~~~w~  237 (355)
T KOG0033|consen  163 VNDGEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ-----HRLYEQIKAGAYDYPSPEWD  237 (355)
T ss_pred             eCCccccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccH-----HHHHHHHhccccCCCCcccC
Confidence                                    5689999999999999999999999965211     1223333333    223343


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                       .++++.++|+.+||..|  |.+|.|+.|.++
T Consensus       238 -~is~~Ak~LvrrML~~d--P~kRIta~EAL~  266 (355)
T KOG0033|consen  238 -TVTPEAKSLIRRMLTVN--PKKRITADEALK  266 (355)
T ss_pred             -cCCHHHHHHHHHHhccC--hhhhccHHHHhC
Confidence             68899999999999999  889999988774

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.97  E-value=7.9e-31  Score=274.09  Aligned_cols=219  Identities=19%  Similarity=0.202  Sum_probs=170.0

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC---CCHHHHHHHHHHHHhcC-CCCccceeccccc--ceeEEEeecCCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG---LSEEDFQAKVSFLTAVR-HPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~---~~~~~~~~Ev~iL~~l~-HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      ..+|.|+||.||++..  +|..||||.+...   .....+.+|+.++.++. |||||++++++.+  ..+++|||+. ++
T Consensus        10 ~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e~~~-~~   88 (288)
T cd06616          10 GEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICMELMD-IS   88 (288)
T ss_pred             HHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEeccc-CC
Confidence            4678999999999998  5799999998732   23456889999999996 9999999998855  7889999986 56


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.++......     .....+++..+..++.+++.||.|||+.  .+|+||||||+|||++.++.+||+|||++..    
T Consensus        89 l~~l~~~~~~-----~~~~~l~~~~~~~i~~~i~~~l~~lh~~--~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~  161 (288)
T cd06616          89 LDKFYKYVYE-----VLKSVIPEEILGKIAVATVKALNYLKEE--LKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDS  161 (288)
T ss_pred             HHHHHHHHHH-----hhcCCCCHHHHHHHHHHHHHHHHHHhhc--CCeeccCCCHHHEEEccCCcEEEeecchhHHhccC
Confidence            6654421100     1346799999999999999999999973  3699999999999999999999999998742    


Q ss_pred             --------------------c---CCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCC----CCCh
Q 005680          491 --------------------D---QLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG----IWPL  543 (683)
Q Consensus       491 --------------------~---~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~----~~p~  543 (683)
                                          .   .++.++|||||||++|+|++|++||.....    ....+..+.....+    ..+.
T Consensus       162 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  237 (288)
T cd06616         162 IAKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWNS----VFDQLTQVVKGDPPILSNSEER  237 (288)
T ss_pred             CccccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcch----HHHHHhhhcCCCCCcCCCcCCC
Confidence                                1   367789999999999999999999864321    01112222222111    1123


Q ss_pred             hhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          544 DLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       544 ~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .++..+.+|+.+||+.+  |..|||+.+|+..
T Consensus       238 ~~~~~l~~li~~~l~~~--p~~Rpt~~~i~~~  267 (288)
T cd06616         238 EFSPSFVNFINLCLIKD--ESKRPKYKELLEH  267 (288)
T ss_pred             ccCHHHHHHHHHHccCC--hhhCcCHHHHhcC
Confidence            47889999999999999  7899999998764

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.97  E-value=9.6e-31  Score=275.59  Aligned_cols=218  Identities=18%  Similarity=0.266  Sum_probs=174.5

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCC--CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEee
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN--GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEY  409 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~--~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey  409 (683)
                      ++|... +.+|.|+||.||+|..  ++..||+|.+..  ....+.+.+|+.+++.++||||++++++|..  ..|+|+||
T Consensus        19 ~~~~~~-~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~   97 (293)
T cd06647          19 KKYTRF-EKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEY   97 (293)
T ss_pred             hhceee-eEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEec
Confidence            445433 5568999999999986  678999999862  2334678899999999999999999999855  78999999


Q ss_pred             cCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCcc
Q 005680          410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNI  489 (683)
Q Consensus       410 ~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~  489 (683)
                      +++++|.+++.           ...+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++.
T Consensus        98 ~~~~~L~~~~~-----------~~~l~~~~~~~i~~~l~~al~~LH~---~gi~H~dL~p~Nili~~~~~~kL~dfg~~~  163 (293)
T cd06647          98 LAGGSLTDVVT-----------ETCMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCA  163 (293)
T ss_pred             CCCCcHHHHHh-----------hcCCCHHHHHHHHHHHHHHHHHHHh---CCEeeccCCHHHEEEcCCCCEEEccCccee
Confidence            99999999983           2357899999999999999999999   679999999999999999999999999763


Q ss_pred             c-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCC--CCCC
Q 005680          490 C-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNA--GIWP  542 (683)
Q Consensus       490 ~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~--~~~p  542 (683)
                      .                         ..++.++|||||||++|+|++|++||......     ..+..+.....  ...+
T Consensus       164 ~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~-----~~~~~~~~~~~~~~~~~  238 (293)
T cd06647         164 QITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPL-----RALYLIATNGTPELQNP  238 (293)
T ss_pred             cccccccccccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChh-----hheeehhcCCCCCCCCc
Confidence            2                         23567899999999999999999999643221     01111111111  1123


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ..++..+.+++.+||..+  |..||++.+++..
T Consensus       239 ~~~~~~l~~li~~~l~~~--p~~Rp~~~~il~h  269 (293)
T cd06647         239 EKLSAIFRDFLNRCLEMD--VEKRGSAKELLQH  269 (293)
T ss_pred             cccCHHHHHHHHHHccCC--hhhCcCHHHHhcC
Confidence            346778999999999999  7799999998865

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.97  E-value=1.1e-30  Score=272.07  Aligned_cols=217  Identities=19%  Similarity=0.253  Sum_probs=169.7

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCC----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNN----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      +.+|.|+||.||+|..  ++..||||.++.    ......+.+|+.++++++||||+++++++.+  ..++||||++++.
T Consensus         7 ~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~~~~~~   86 (288)
T cd07833           7 GVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFEYVERTL   86 (288)
T ss_pred             EEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEecCCCCH
Confidence            4568999999999998  578999999872    2234678999999999999999999999865  6899999999877


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |..++          .....+++..+..++.+|+.||.|||.   .+++|+||+|+||+++.++.+||+|||++..    
T Consensus        87 l~~~~----------~~~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~  153 (288)
T cd07833          87 LELLE----------ASPGGLPPDAVRSYIWQLLQAIAYCHS---HNIIHRDIKPENILVSESGVLKLCDFGFARALRAR  153 (288)
T ss_pred             HHHHH----------hcCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCCEEEEeeecccccCCC
Confidence            76655          234568999999999999999999999   6799999999999999999999999998642    


Q ss_pred             ----------------------c-CCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhH--H-------HHHHHhc--C
Q 005680          491 ----------------------D-QLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQ--T-------TLMQVLD--G  536 (683)
Q Consensus       491 ----------------------~-~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~--~-------~~~~ild--~  536 (683)
                                            . .++.++||||||+++|+|++|++||...........  .       .......  +
T Consensus       154 ~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (288)
T cd07833         154 PASPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNP  233 (288)
T ss_pred             ccccccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHhhhcccCc
Confidence                                  1 456789999999999999999999864221100000  0       0000000  0


Q ss_pred             ----------C-----CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          537 ----------N-----AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       537 ----------~-----~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                                .     ...++..++..+.+|+.+||..+  |.+|||+.+++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--p~~Rps~~~il~  284 (288)
T cd07833         234 RFAGVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMD--PKERLTCDELLQ  284 (288)
T ss_pred             cccccccCCCCCcHHHHHhcCCccchHHHHHHHHHhccC--chhcccHHHHhc
Confidence                      0     00123345788999999999999  789999998875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=8.8e-31  Score=293.58  Aligned_cols=220  Identities=15%  Similarity=0.236  Sum_probs=166.2

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      .+|.. .+.+|.|+||.||+|.+  .+..||||...    ...+.+|+.+|++++|||||++++++..  ..+||||++.
T Consensus       169 ~gy~i-~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~----~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~~~  243 (461)
T PHA03211        169 LGFAI-HRALTPGSEGCVFESSHPDYPQRVVVKAGW----YASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPKYR  243 (461)
T ss_pred             CCeEE-EEEEccCCCeEEEEEEECCCCCEEEEeccc----ccCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEccC
Confidence            34544 35678999999999998  47889999753    2346789999999999999999998854  7899999995


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                       ++|.+++..         ....+++..++.|+.||+.||.|||+   .+||||||||+||||+.++.+||+|||+++. 
T Consensus       244 -~~L~~~l~~---------~~~~l~~~~~~~i~~qi~~aL~yLH~---~gIvHrDLKP~NILl~~~~~vkL~DFGla~~~  310 (461)
T PHA03211        244 -SDLYTYLGA---------RLRPLGLAQVTAVARQLLSAIDYIHG---EGIIHRDIKTENVLVNGPEDICLGDFGAACFA  310 (461)
T ss_pred             -CCHHHHHHh---------cCCCCCHHHHHHHHHHHHHHHHHHHH---CCEEECcCCHHHEEECCCCCEEEcccCCceec
Confidence             788888842         23469999999999999999999999   6799999999999999999999999998742 


Q ss_pred             --------------------------cCCCcccccccHHHHHHHHhhCCCCc-hhhHHH-hhhhHHHHHHHhcC------
Q 005680          491 --------------------------DQLNVRSDIRAFGTLLLHLLTGRNWA-GLVEKA-MALDQTTLMQVLDG------  536 (683)
Q Consensus       491 --------------------------~~~t~ksDVwSlGviL~eLltG~~Pf-~~~~~~-~~~~~~~~~~ild~------  536 (683)
                                                ..++.++|||||||+||||++|..|+ ...... .......+..++..      
T Consensus       311 ~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~  390 (461)
T PHA03211        311 RGSWSTPFHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVHVD  390 (461)
T ss_pred             ccccccccccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhccccc
Confidence                                      23678899999999999999987543 211000 00000001111000      


Q ss_pred             ---------------------C-----CCCCC--hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          537 ---------------------N-----AGIWP--LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       537 ---------------------~-----~~~~p--~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                                           .     ...|.  ...+..+.+||.+||+.|  |++|||+.|+++.
T Consensus       391 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~D--P~~RPsa~elL~h  455 (461)
T PHA03211        391 EFPQHAGSRLVSQYRHRAARNRRPAYTRPAWTRYYKLDLDVEYLVCRALTFD--GARRPSAAELLRL  455 (461)
T ss_pred             cCCCCcchHHHHHHHhhhhcccCCccCCcchhhhccccchHHHHHHHHcccC--hhhCcCHHHHhhC
Confidence                                 0     00111  023457899999999999  8899999999864

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.97  E-value=1.3e-30  Score=272.90  Aligned_cols=209  Identities=20%  Similarity=0.274  Sum_probs=168.5

Q ss_pred             ccccccCCceEEEEEEE-----CCeeEEEEEcCCC------CCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEE
Q 005680          342 FRLKCAGDWTNVYRGRL-----NHASVAIKTLNNG------LSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVF  407 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~-----~g~~VAvK~l~~~------~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~  407 (683)
                      .+.+|.|+||.||++..     +|..||+|++...      ...+.+..|+.++.++ +||||+.+++++..  ..|+||
T Consensus         5 ~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~   84 (290)
T cd05613           5 LKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKLHLIL   84 (290)
T ss_pred             eeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeEEEEE
Confidence            35678999999999986     5789999998632      1235688899999999 59999999988865  678999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCC
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL  487 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGl  487 (683)
                      ||+++++|.+++.          ....+++..+..++.||+.||.|||+   .+++||||+|+|||++.++.+||+|||+
T Consensus        85 e~~~~~~L~~~l~----------~~~~l~~~~~~~~~~qi~~al~~lH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~  151 (290)
T cd05613          85 DYINGGELFTHLS----------QRERFKEQEVQIYSGEIVLALEHLHK---LGIIYRDIKLENILLDSNGHVVLTDFGL  151 (290)
T ss_pred             ecCCCCcHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHeEECCCCCEEEeeCcc
Confidence            9999999999993          44568899999999999999999999   6799999999999999999999999998


Q ss_pred             ccc----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCC
Q 005680          488 NIC----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG  539 (683)
Q Consensus       488 a~~----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~  539 (683)
                      +..                            ..++.++||||||+++|+|++|..||......  .....+...+.....
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~--~~~~~~~~~~~~~~~  229 (290)
T cd05613         152 SKEFHEDEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEK--NSQAEISRRILKSEP  229 (290)
T ss_pred             ceecccccccccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCCcc--ccHHHHHHHhhccCC
Confidence            743                            12457899999999999999999998642111  111112222222334


Q ss_pred             CCChhhHHHHHHHHHHhhhcCCCccccc
Q 005680          540 IWPLDLAEELAGIALKCLSADQDANRDL  567 (683)
Q Consensus       540 ~~p~~~~~~l~~Li~~CL~~dP~p~~RP  567 (683)
                      .+|..++..+.+++.+||+.|  |..||
T Consensus       230 ~~~~~~~~~~~~ll~~~l~~~--p~~R~  255 (290)
T cd05613         230 PYPQEMSALAKDIIQRLLMKD--PKKRL  255 (290)
T ss_pred             CCCccCCHHHHHHHHHHhcCC--HHHhc
Confidence            556678889999999999999  77897

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.97  E-value=8.7e-31  Score=272.82  Aligned_cols=219  Identities=19%  Similarity=0.261  Sum_probs=170.2

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      .+.+|.|++|.||+|..  +|..||||++...    .....+.+|+.+++.++||||+++++++.+  ..|+||||++ +
T Consensus         4 ~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~~-~   82 (283)
T cd07835           4 VEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFLD-L   82 (283)
T ss_pred             heEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEeccC-c
Confidence            35678999999999997  6899999998722    223568899999999999999999999866  7899999995 7


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++...        ....+++..+..++.||+.||.|||+   .+++||||+|+||+++.++.++|+|||++..   
T Consensus        83 ~l~~~~~~~--------~~~~~~~~~~~~~~~~i~~~L~~lH~---~~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~  151 (283)
T cd07835          83 DLKKYMDSS--------PLTGLDPPLIKSYLYQLLQGIAYCHS---HRVLHRDLKPQNLLIDREGALKLADFGLARAFGV  151 (283)
T ss_pred             CHHHHHhhC--------CCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCHHHEEEcCCCcEEEeecccccccCC
Confidence            899988432        22468999999999999999999999   6799999999999999999999999998742   


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhH----------HH------HH
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQ----------TT------LM  531 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~----------~~------~~  531 (683)
                                             ..++.++||||||+++|+|++|++||...........          ..      +.
T Consensus       152 ~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (283)
T cd07835         152 PVRTYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEIDQLFRIFRTLGTPDEDVWPGVTSLP  231 (283)
T ss_pred             CccccCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhhhhhch
Confidence                                   1246789999999999999999999854221100000          00      00


Q ss_pred             HH---hc----CCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          532 QV---LD----GNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       532 ~i---ld----~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ..   ..    .........++..+.+++.+||+.|  |..|||+.+++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--P~~Rpt~~~il~  279 (283)
T cd07835         232 DYKPTFPKWARQDLSKVVPNLDEDGLDLLSKMLVYD--PAKRISAKAALQ  279 (283)
T ss_pred             hhhhhcccccccchhhhcCCCCHHHHHHHHHHhcCC--hhhCcCHHHHhc
Confidence            00   00    0001112345678999999999999  889999999874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.97  E-value=2.1e-30  Score=263.49  Aligned_cols=213  Identities=23%  Similarity=0.345  Sum_probs=177.3

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc----ceeEEEeecCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE----LKCIVFEYMPN  412 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----~~~LV~Ey~~g  412 (683)
                      +.+|+|++|.||+|..  ++..|++|++....    ..+.+.+|+.++++++||||+++++.+.+    ..++|+||+++
T Consensus         6 ~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~   85 (260)
T cd06606           6 ELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFLEYVSG   85 (260)
T ss_pred             eEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEEEecCC
Confidence            5678999999999998  48999999987433    35678999999999999999999998854    57899999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      ++|.+++.          ....+++..+..++.+++.||.|||+   .+++|+||+|+||+++.++.++|+|||.+..  
T Consensus        86 ~~L~~~~~----------~~~~~~~~~~~~~~~~l~~~l~~lh~---~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~  152 (260)
T cd06606          86 GSLSSLLK----------KFGKLPEPVIRKYTRQILEGLAYLHS---NGIVHRDIKGANILVDSDGVVKLADFGCAKRLG  152 (260)
T ss_pred             CcHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEcCCCCEEEcccccEEecc
Confidence            99999994          33489999999999999999999999   6799999999999999999999999997643  


Q ss_pred             -------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhc-CCCCCCChh
Q 005680          491 -------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLD-GNAGIWPLD  544 (683)
Q Consensus       491 -------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild-~~~~~~p~~  544 (683)
                                               ...+.++||||||+++|+|++|..||.....    .......+.. ......|..
T Consensus       153 ~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~----~~~~~~~~~~~~~~~~~~~~  228 (260)
T cd06606         153 DIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELGN----PMAALYKIGSSGEPPEIPEH  228 (260)
T ss_pred             cccccccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCc----hHHHHHhccccCCCcCCCcc
Confidence                                     1256789999999999999999999865331    1111222222 233455667


Q ss_pred             hHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          545 LAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .+..+.+++.+||+.+  |..||++.+++.
T Consensus       229 ~~~~l~~~i~~~l~~~--p~~Rp~~~~ll~  256 (260)
T cd06606         229 LSEEAKDFLRKCLRRD--PKKRPTADELLQ  256 (260)
T ss_pred             cCHHHHHHHHHhCcCC--hhhCCCHHHHhh
Confidence            7899999999999999  789999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.97  E-value=1.6e-30  Score=274.16  Aligned_cols=213  Identities=18%  Similarity=0.184  Sum_probs=171.0

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC--CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCch
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG--LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLR  416 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~--~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~  416 (683)
                      ..+|.|+||.||++..  +|..||||.+...  .....+.+|+.+++.++||||+++++++..  ..++||||+++++|.
T Consensus        26 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~  105 (292)
T cd06657          26 IKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALT  105 (292)
T ss_pred             HHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCCcHH
Confidence            5678999999999988  6899999998622  234568899999999999999999998854  889999999999999


Q ss_pred             hhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc------
Q 005680          417 DKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC------  490 (683)
Q Consensus       417 ~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~------  490 (683)
                      +++.           ...+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++..      
T Consensus       106 ~~~~-----------~~~~~~~~~~~~~~ql~~~l~~lH~---~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~  171 (292)
T cd06657         106 DIVT-----------HTRMNEEQIAAVCLAVLKALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP  171 (292)
T ss_pred             HHHh-----------cCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEEcccccceecccccc
Confidence            9872           2358999999999999999999999   6799999999999999999999999997632      


Q ss_pred             -------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHH
Q 005680          491 -------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAG  551 (683)
Q Consensus       491 -------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~  551 (683)
                                         ..++.++|||||||++|+|++|.+||........  ...+...+. ........++..+.+
T Consensus       172 ~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~l~~  248 (292)
T cd06657         172 RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKA--MKMIRDNLP-PKLKNLHKVSPSLKG  248 (292)
T ss_pred             cccccccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH--HHHHHhhCC-cccCCcccCCHHHHH
Confidence                               2347789999999999999999999864221100  001111111 111122346778999


Q ss_pred             HHHHhhhcCCCccccccHHHHHH
Q 005680          552 IALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       552 Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ++.+||..+  |..||++.+++.
T Consensus       249 li~~~l~~~--P~~R~~~~~ll~  269 (292)
T cd06657         249 FLDRLLVRD--PAQRATAAELLK  269 (292)
T ss_pred             HHHHHHhCC--cccCcCHHHHhc
Confidence            999999999  779999999876

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.97  E-value=1.8e-30  Score=270.20  Aligned_cols=219  Identities=18%  Similarity=0.254  Sum_probs=170.2

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC---CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCc
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG---LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNL  415 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~---~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL  415 (683)
                      +.+|.|++|.||+|..  +|..||||.+...   .....+.+|+.++++++||||+++++++.+  ..+|||||++ |+|
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~l   84 (284)
T cd07836           6 EKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYMD-KDL   84 (284)
T ss_pred             eeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecCC-ccH
Confidence            4567899999999998  6899999998732   234677889999999999999999999866  7899999998 589


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-----
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-----  490 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-----  490 (683)
                      .+++...       .....+++..+..++.||+.||.|||+   .+++||||||+||++++++.++|+|||++..     
T Consensus        85 ~~~~~~~-------~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~  154 (284)
T cd07836          85 KKYMDTH-------GVRGALDPNTVKSFTYQLLKGIAFCHE---NRVLHRDLKPQNLLINKRGELKLADFGLARAFGIPV  154 (284)
T ss_pred             HHHHHhc-------CCCCCcCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEECCCCcEEEeecchhhhhcCCc
Confidence            8888543       223568999999999999999999999   6799999999999999999999999998742     


Q ss_pred             ---------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh----------HHHHHHHhc--CC
Q 005680          491 ---------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD----------QTTLMQVLD--GN  537 (683)
Q Consensus       491 ---------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~----------~~~~~~ild--~~  537 (683)
                                           ..++.++|||||||++|+|++|++||..........          ...+..+..  ..
T Consensus       155 ~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (284)
T cd07836         155 NTFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRIMGTPTESTWPGISQLPEY  234 (284)
T ss_pred             cccccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhHHHHhcCchh
Confidence                                 124678999999999999999999986432110000          000000000  00


Q ss_pred             CCC-----------CChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          538 AGI-----------WPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       538 ~~~-----------~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ...           ..+.++..+.+++.+||+.|  |.+||++.+++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~--p~~R~~~~~~l~  280 (284)
T cd07836         235 KPTFPRYPPQDLQQLFPHADPLGIDLLHRLLQLN--PELRISAHDALQ  280 (284)
T ss_pred             cccccCCChHHHHHHhhhcCcHHHHHHHHHhcCC--cccCCCHHHHhc
Confidence            000           11235678899999999999  889999998874

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.97  E-value=1.9e-30  Score=269.68  Aligned_cols=225  Identities=17%  Similarity=0.207  Sum_probs=169.5

Q ss_pred             HHHHhhcCccccccc-cccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCCccceeccccc--ce
Q 005680          330 DIRLATEDFSERFRL-KCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LK  403 (683)
Q Consensus       330 ei~~at~~F~~~~~l-iG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~  403 (683)
                      ++....++|.....+ +|.|+||.||++..  ++..+|+|.+...... .  .|+.+...+ +||||+++++++..  ..
T Consensus         8 ~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~-~--~e~~~~~~~~~h~~iv~~~~~~~~~~~~   84 (267)
T PHA03390          8 ELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFN-A--IEPMVHQLMKDNPNFIKLYYSVTTLKGH   84 (267)
T ss_pred             HHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcc-h--hhHHHHHHhhcCCCEEEEEEEEecCCee
Confidence            333444454443333 58999999999997  6789999998632111 1  133233222 79999999999854  78


Q ss_pred             eEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCC-cEEE
Q 005680          404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL-VAKI  482 (683)
Q Consensus       404 ~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~-~~KL  482 (683)
                      |+||||+++|+|.+++.          ....+++..+..++.||+.||.|||+   .+++||||||+||+++.++ .++|
T Consensus        85 ~iv~e~~~~~~L~~~l~----------~~~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~~~l  151 (267)
T PHA03390         85 VLIMDYIKDGDLFDLLK----------KEGKLSEAEVKKIIRQLVEALNDLHK---HNIIHNDIKLENVLYDRAKDRIYL  151 (267)
T ss_pred             EEEEEcCCCCcHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEEeCCCCeEEE
Confidence            99999999999999993          33489999999999999999999999   6799999999999999998 9999


Q ss_pred             ecCCCccc---------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCC
Q 005680          483 SGLGLNIC---------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIW  541 (683)
Q Consensus       483 ~DFGla~~---------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~  541 (683)
                      +|||++..                     ..++.++|||||||++|+|++|..||....... .....+.... ......
T Consensus       152 ~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~-~~~~~~~~~~-~~~~~~  229 (267)
T PHA03390        152 CDYGLCKIIGTPSCYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEE-LDLESLLKRQ-QKKLPF  229 (267)
T ss_pred             ecCccceecCCCccCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcch-hhHHHHHHhh-cccCCc
Confidence            99998742                     346788999999999999999999996422110 1111121222 222234


Q ss_pred             ChhhHHHHHHHHHHhhhcCCCcccccc-HHHHHH
Q 005680          542 PLDLAEELAGIALKCLSADQDANRDLR-IAGVMK  574 (683)
Q Consensus       542 p~~~~~~l~~Li~~CL~~dP~p~~RPs-~~eVl~  574 (683)
                      +..+++.+.+++.+||+.+  |..||+ +.++++
T Consensus       230 ~~~~~~~~~~li~~~l~~~--p~~R~~~~~~~l~  261 (267)
T PHA03390        230 IKNVSKNANDFVQSMLKYN--INYRLTNYNEIIK  261 (267)
T ss_pred             ccccCHHHHHHHHHHhccC--hhhCCchHHHHhc
Confidence            4468899999999999999  889996 577763

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.97  E-value=2.6e-30  Score=275.34  Aligned_cols=218  Identities=21%  Similarity=0.320  Sum_probs=174.5

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCCC-----CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      ...+|+|+||.||+|..  +|..||+|.+....     ....+..|+.++++++|||+|+++++|.+  ..++||||++ 
T Consensus        30 ~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-  108 (317)
T cd06635          30 LREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEYCL-  108 (317)
T ss_pred             hheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEeCCC-
Confidence            35578999999999997  67899999986221     12468889999999999999999999865  7899999997 


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++..         ...++++..+..++.+|+.||.|||+   .+|+||||+|+||+++.++.+||+|||++..  
T Consensus       109 g~l~~~~~~---------~~~~l~~~~~~~i~~~i~~~l~~lH~---~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~  176 (317)
T cd06635         109 GSASDLLEV---------HKKPLQEVEIAAITHGALQGLAYLHS---HNMIHRDIKAGNILLTEPGQVKLADFGSASIAS  176 (317)
T ss_pred             CCHHHHHHH---------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcccEEECCCCCEEEecCCCccccC
Confidence            578777742         23568999999999999999999999   6799999999999999999999999998642  


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCC-CCCChhhHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNA-GIWPLDLAE  547 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~-~~~p~~~~~  547 (683)
                                            ..++.++|||||||++|+|++|++||.....     ......+..... ...+..++.
T Consensus       177 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  251 (317)
T cd06635         177 PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA-----MSALYHIAQNESPTLQSNEWSD  251 (317)
T ss_pred             CcccccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCccH-----HHHHHHHHhccCCCCCCccccH
Confidence                                  2357789999999999999999999854221     112222322222 222335678


Q ss_pred             HHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          548 ELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       548 ~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                      .+.+++.+||+.+  |..||++.+++..+-.+
T Consensus       252 ~l~~li~~~l~~~--p~~Rpt~~~il~~~~~~  281 (317)
T cd06635         252 YFRNFVDSCLQKI--PQDRPTSEELLKHMFVL  281 (317)
T ss_pred             HHHHHHHHHccCC--cccCcCHHHHHhChhhh
Confidence            8999999999999  88999999998876544

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.97  E-value=1.6e-30  Score=275.40  Aligned_cols=217  Identities=20%  Similarity=0.218  Sum_probs=168.1

Q ss_pred             ccCCceEEEEEEECCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCchhhh
Q 005680          346 CAGDWTNVYRGRLNHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRDKL  419 (683)
Q Consensus       346 G~G~fG~Vykg~~~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~~L  419 (683)
                      |+|+++.||++..+|..||||++...    .....+..|+.+++.++||||+++++++.+  ..+++|||+++|+|.+++
T Consensus        11 ~~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~~l   90 (314)
T cd08216          11 EDLMIVHLAKHKPTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGSCEDLL   90 (314)
T ss_pred             cCCceEEEEEecCCCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCCHHHHH
Confidence            45566666777678999999998632    233578999999999999999999999865  789999999999999999


Q ss_pred             hhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---------
Q 005680          420 FTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---------  490 (683)
Q Consensus       420 ~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---------  490 (683)
                      ...        ....+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||.+..         
T Consensus        91 ~~~--------~~~~~~~~~~~~~~~~l~~~L~~LH~---~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~  159 (314)
T cd08216          91 KTH--------FPEGLPELAIAFILKDVLNALDYIHS---KGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQR  159 (314)
T ss_pred             HHh--------cccCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCcceEEEecCCceEEecCccceeecccccccc
Confidence            533        23458899999999999999999999   6799999999999999999999999997631         


Q ss_pred             -------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHH---HHHHhc-------
Q 005680          491 -------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTT---LMQVLD-------  535 (683)
Q Consensus       491 -------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~---~~~ild-------  535 (683)
                                               ..++.++|||||||++|+|++|..||.............   ....++       
T Consensus       160 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (314)
T cd08216         160 VVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPATQMLLEKVRGTVPCLLDKSTYPLY  239 (314)
T ss_pred             ccccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCccccccCchhhh
Confidence                                     136788999999999999999999997432211000000   000000       


Q ss_pred             ------------------CCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          536 ------------------GNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       536 ------------------~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                                        ......+...+.++.+|+.+||..|  |..|||+.++++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--P~~Rpt~~~ll~~  295 (314)
T cd08216         240 EDSMSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRD--PESRPSASQLLNH  295 (314)
T ss_pred             cCCcCcccccccccchhhhhhcchhhHHHHHHHHHHHHHhhcC--CCcCcCHHHHhcC
Confidence                              0001112345678999999999999  7899999999874

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.97  E-value=1.6e-30  Score=272.12  Aligned_cols=220  Identities=21%  Similarity=0.274  Sum_probs=175.0

Q ss_pred             ccccccCCceEEEEEEE-----CCeeEEEEEcCCC------CCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEE
Q 005680          342 FRLKCAGDWTNVYRGRL-----NHASVAIKTLNNG------LSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVF  407 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~-----~g~~VAvK~l~~~------~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~  407 (683)
                      .+.+|.|+||.||++..     ++..||||++...      .....+..|+.++.++ +||||+++++++..  ..++||
T Consensus         5 ~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   84 (288)
T cd05583           5 LRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKLHLIL   84 (288)
T ss_pred             EEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEEEEEE
Confidence            35678999999999885     4678999998621      2235688999999999 59999999988865  678999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCC
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL  487 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGl  487 (683)
                      ||+++|+|.+++.          ....+++..+..++.|++.||.|||+   .+++||||+|+||+++.++.++|+|||+
T Consensus        85 e~~~~~~L~~~~~----------~~~~~~~~~~~~~~~ql~~~l~~lH~---~~~~H~dl~p~nil~~~~~~~~l~dfg~  151 (288)
T cd05583          85 DYVNGGELFTHLY----------QREHFTESEVRVYIAEIVLALDHLHQ---LGIIYRDIKLENILLDSEGHVVLTDFGL  151 (288)
T ss_pred             ecCCCCcHHHHHh----------hcCCcCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHeEECCCCCEEEEECcc
Confidence            9999999999983          34568999999999999999999999   7799999999999999999999999998


Q ss_pred             ccc----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCC
Q 005680          488 NIC----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG  539 (683)
Q Consensus       488 a~~----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~  539 (683)
                      +..                            ...+.++||||||+++|+|++|..||...... .........+. ....
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~-~~~~~~~~~~~-~~~~  229 (288)
T cd05583         152 SKEFLAEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQ-NSQSEISRRIL-KSKP  229 (288)
T ss_pred             ccccccccccccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCccc-chHHHHHHHHH-ccCC
Confidence            642                            01467899999999999999999998532111 01111111222 2233


Q ss_pred             CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHH
Q 005680          540 IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDE  578 (683)
Q Consensus       540 ~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~  578 (683)
                      ..|..++..+.+++.+||+.|  |..|||+.++...|+.
T Consensus       230 ~~~~~~~~~l~~li~~~l~~~--p~~R~t~~~~~~~l~~  266 (288)
T cd05583         230 PFPKTMSAEARDFIQKLLEKD--PKKRLGANGADEIKNH  266 (288)
T ss_pred             CCCcccCHHHHHHHHHHhcCC--HhhccCcchHHHHhcC
Confidence            455567789999999999999  7899998888776654

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=3.4e-30  Score=262.51  Aligned_cols=212  Identities=23%  Similarity=0.367  Sum_probs=177.2

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      +.+|.|+||.||++..  ++..||+|.+....    ....+.+|+.++++++|||++++++++.+  ..++||||+++++
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~   85 (254)
T cd06627           6 DLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEYAENGS   85 (254)
T ss_pred             eEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEecCCCCc
Confidence            5678999999999987  57899999987332    34678999999999999999999998865  7899999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++.          ....+++..+..++.|++.||.|||+   .+|+||||+|+||+++.++.++|+|||++..    
T Consensus        86 L~~~~~----------~~~~l~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~  152 (254)
T cd06627          86 LRQIIK----------KFGPFPESLVAVYVYQVLQGLAYLHE---QGVIHRDIKAANILTTKDGVVKLADFGVATKLNDV  152 (254)
T ss_pred             HHHHHH----------hccCCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCHHHEEECCCCCEEEeccccceecCCC
Confidence            999983          44679999999999999999999999   6799999999999999999999999998753    


Q ss_pred             ---------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHH
Q 005680          491 ---------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEEL  549 (683)
Q Consensus       491 ---------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l  549 (683)
                                           ..++.++||||||+++|+|++|.+||.....     ...............+..++..+
T Consensus       153 ~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  227 (254)
T cd06627         153 SKDDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNP-----MAALFRIVQDDHPPLPEGISPEL  227 (254)
T ss_pred             cccccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCccH-----HHHHHHHhccCCCCCCCCCCHHH
Confidence                                 1246789999999999999999999864322     11122222333445566788999


Q ss_pred             HHHHHHhhhcCCCccccccHHHHHH
Q 005680          550 AGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       550 ~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .+++.+||..+  |..|||+.+++.
T Consensus       228 ~~~i~~~l~~~--p~~R~~~~~~l~  250 (254)
T cd06627         228 KDFLMQCFQKD--PNLRPTAKQLLK  250 (254)
T ss_pred             HHHHHHHHhCC--hhhCcCHHHHhc
Confidence            99999999999  779999998874

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.97  E-value=4.7e-30  Score=261.31  Aligned_cols=216  Identities=24%  Similarity=0.388  Sum_probs=179.2

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      +.+|.|+||.||++..  ++..||+|++...    .....+..|+.+++.++|||++++++.+.+  ..++|+||+++++
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~~~~~~   85 (258)
T cd08215           6 KQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEYADGGD   85 (258)
T ss_pred             eeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEecCCCc
Confidence            5568999999999998  4899999998732    334678899999999999999999998755  7889999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++....      .....+++..+..++.+++.||.|||+   .+++|+||+|+||+++.++.++|+|||++..    
T Consensus        86 L~~~l~~~~------~~~~~~~~~~~~~i~~~i~~~l~~lh~---~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~  156 (258)
T cd08215          86 LSQKIKKQK------KEGKPFPEEQILDWFVQLCLALKYLHS---RKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSST  156 (258)
T ss_pred             HHHHHHHhh------ccCCCcCHHHHHHHHHHHHHHHHHHHh---CCEecccCChHHeEEcCCCcEEECCccceeecccC
Confidence            999995431      124679999999999999999999999   6799999999999999999999999998743    


Q ss_pred             ---------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHH
Q 005680          491 ---------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEEL  549 (683)
Q Consensus       491 ---------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l  549 (683)
                                           ..++.++||||||+++|+|++|..||.....     ...............|..++..+
T Consensus       157 ~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  231 (258)
T cd08215         157 VDLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGENL-----LELALKILKGQYPPIPSQYSSEL  231 (258)
T ss_pred             cceecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCcH-----HHHHHHHhcCCCCCCCCCCCHHH
Confidence                                 2356789999999999999999999864321     12222333334445566778899


Q ss_pred             HHHHHHhhhcCCCccccccHHHHHH
Q 005680          550 AGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       550 ~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .+++.+||..+  |..|||+.+++.
T Consensus       232 ~~~i~~~l~~~--p~~Rp~~~~ll~  254 (258)
T cd08215         232 RNLVSSLLQKD--PEERPSIAQILQ  254 (258)
T ss_pred             HHHHHHHcCCC--hhhCcCHHHHhc
Confidence            99999999999  789999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.97  E-value=3.1e-30  Score=267.90  Aligned_cols=216  Identities=17%  Similarity=0.215  Sum_probs=166.1

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC---CCHHHHHHHHHHHHhcC-CCCccceeccccc----ceeEEEeecCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG---LSEEDFQAKVSFLTAVR-HPHLVAVMGCCSE----LKCIVFEYMPN  412 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~---~~~~~~~~Ev~iL~~l~-HpnIV~l~g~~~~----~~~LV~Ey~~g  412 (683)
                      +.+|.|+||.||+|..  ++..||+|.++..   .......+|+.++.++. ||||+++++++.+    ..++||||++ 
T Consensus         5 ~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e~~~-   83 (282)
T cd07831           5 GKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFELMD-   83 (282)
T ss_pred             eeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEecCC-
Confidence            4568999999999998  6899999998732   22234567899999985 9999999999854    6799999997 


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+.+..         ....+++..+..++.||+.||.|||+   .+++||||+|+||+++. +.+||+|||++..  
T Consensus        84 ~~l~~~l~~---------~~~~~~~~~~~~~~~qi~~~L~~LH~---~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~  150 (282)
T cd07831          84 MNLYELIKG---------RKRPLPEKRVKSYMYQLLKSLDHMHR---NGIFHRDIKPENILIKD-DILKLADFGSCRGIY  150 (282)
T ss_pred             ccHHHHHHh---------ccCCCCHHHHHHHHHHHHHHHHHHHH---CCceecccCHHHEEEcC-CCeEEEecccccccc
Confidence            588888742         23568999999999999999999999   67999999999999999 9999999998742  


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh---------HHHHHHHhcC--
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD---------QTTLMQVLDG--  536 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~---------~~~~~~ild~--  536 (683)
                                             ..++.++|||||||++|+|++|.+||..........         ...+......  
T Consensus       151 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (282)
T cd07831         151 SKPPYTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKSR  230 (282)
T ss_pred             cCCCcCCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHHHHHHHHHHHcCCCCHHHHHhhcccc
Confidence                                   124678999999999999999999995422110000         0000001100  


Q ss_pred             -CCCCC-----------ChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          537 -NAGIW-----------PLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       537 -~~~~~-----------p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                       ....+           ...++..+.+|+.+||.++  |..||++.+++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--P~~R~~~~~~l~  278 (282)
T cd07831         231 HMNYNFPSKKGTGLRKLLPNASAEGLDLLKKLLAYD--PDERITAKQALR  278 (282)
T ss_pred             cccccCcccccccHHHHcccccHHHHHHHHHHhccC--cccccCHHHHhh
Confidence             00011           1245789999999999999  889999999875

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=3.8e-30  Score=313.34  Aligned_cols=235  Identities=25%  Similarity=0.373  Sum_probs=179.8

Q ss_pred             cCHHHHHHhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccccc--
Q 005680          326 YAAEDIRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--  401 (683)
Q Consensus       326 ~s~~ei~~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--  401 (683)
                      +++.++..   .|.. ..++|+|+||.||+|..  +|..||||.+.....  ....|+.++++++|||||+++|+|.+  
T Consensus       683 ~~~~~~~~---~~~~-~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~l~~l~HpnIv~~~~~~~~~~  756 (968)
T PLN00113        683 ITINDILS---SLKE-ENVISRGKKGASYKGKSIKNGMQFVVKEINDVNS--IPSSEIADMGKLQHPNIVKLIGLCRSEK  756 (968)
T ss_pred             hhHHHHHh---hCCc-ccEEccCCCeeEEEEEECCCCcEEEEEEccCCcc--ccHHHHHHHhhCCCCCcceEEEEEEcCC
Confidence            45555543   3433 35678999999999997  689999999863322  22356889999999999999999966  


Q ss_pred             ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEE
Q 005680          402 LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAK  481 (683)
Q Consensus       402 ~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~K  481 (683)
                      ..|+||||+++|+|.+++.             .++|..+..|+.||+.||.|||..+.++|+||||||+||+++.++.++
T Consensus       757 ~~~lv~Ey~~~g~L~~~l~-------------~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~  823 (968)
T PLN00113        757 GAYLIHEYIEGKNLSEVLR-------------NLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPH  823 (968)
T ss_pred             CCEEEEeCCCCCcHHHHHh-------------cCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceE
Confidence            7899999999999999992             389999999999999999999965447899999999999999988877


Q ss_pred             EecCCCccc---------------------cCCCcccccccHHHHHHHHhhCCCCchhhH--------HHh-hhhHHHHH
Q 005680          482 ISGLGLNIC---------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVE--------KAM-ALDQTTLM  531 (683)
Q Consensus       482 L~DFGla~~---------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~--------~~~-~~~~~~~~  531 (683)
                      +. ||.+..                     ..++.++|||||||++|||+||++||....        +.. ........
T Consensus       824 ~~-~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  902 (968)
T PLN00113        824 LR-LSLPGLLCTDTKCFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLD  902 (968)
T ss_pred             EE-eccccccccCCCccccccccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHhcCccchh
Confidence            65 443311                     357899999999999999999999985311        100 00011122


Q ss_pred             HHhcCCC---CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          532 QVLDGNA---GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       532 ~ild~~~---~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      .++++..   ...+.....++.+++.+||+.|  |..||||.+|++.|+.+.+.
T Consensus       903 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~~--P~~RPt~~evl~~L~~~~~~  954 (968)
T PLN00113        903 MWIDPSIRGDVSVNQNEIVEVMNLALHCTATD--PTARPCANDVLKTLESASRS  954 (968)
T ss_pred             heeCccccCCCCccHHHHHHHHHHHHhhCcCC--chhCcCHHHHHHHHHHhhcc
Confidence            2333321   1233455667889999999999  88999999999999988653

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.7e-31  Score=290.29  Aligned_cols=218  Identities=18%  Similarity=0.279  Sum_probs=178.8

Q ss_pred             ccccccccccCCceEEEEEEE--CCeeEEEEEcC--CCCCHHHHHHHHHHHHhcCCCCccceeccc--ccceeEEEeecC
Q 005680          338 FSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN--NGLSEEDFQAKVSFLTAVRHPHLVAVMGCC--SELKCIVFEYMP  411 (683)
Q Consensus       338 F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~--~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~--~~~~~LV~Ey~~  411 (683)
                      |-+...-+|.|+||.||++..  ++...|.|++.  .....++|.-||+||+.+.||+||+|++.|  .+.+||+.|||.
T Consensus        33 ~WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC~  112 (1187)
T KOG0579|consen   33 HWEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFCG  112 (1187)
T ss_pred             HHHHHhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeecC
Confidence            333334457899999999987  45567888886  333457899999999999999999999865  448999999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      ||-...++..         -..+|++.++.-++.|++.||.|||+   .+|||||||..|||++-+|.++|+|||.+.. 
T Consensus       113 GGAVDaimlE---------L~r~LtE~QIqvvc~q~ldALn~LHs---~~iIHRDLKAGNiL~TldGdirLADFGVSAKn  180 (1187)
T KOG0579|consen  113 GGAVDAIMLE---------LGRVLTEDQIQVVCYQVLDALNWLHS---QNIIHRDLKAGNILLTLDGDIRLADFGVSAKN  180 (1187)
T ss_pred             CchHhHHHHH---------hccccchHHHHHHHHHHHHHHHHHhh---cchhhhhccccceEEEecCcEeeecccccccc
Confidence            9999988853         45679999999999999999999999   7799999999999999999999999998732 


Q ss_pred             -----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHh--cCCCC
Q 005680          491 -----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVL--DGNAG  539 (683)
Q Consensus       491 -----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~il--d~~~~  539 (683)
                                                   .+|+.++||||||++|.||.-+.||...+...     ..+..+.  ++...
T Consensus       181 ~~t~qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhelnpM-----RVllKiaKSePPTL  255 (1187)
T KOG0579|consen  181 KSTRQKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHELNPM-----RVLLKIAKSEPPTL  255 (1187)
T ss_pred             hhHHhhhccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccccchH-----HHHHHHhhcCCCcc
Confidence                                         46899999999999999999999997653321     1112222  22333


Q ss_pred             CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          540 IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       540 ~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ..|...+..+.+++.+||.+|  |+.||+++++++
T Consensus       256 lqPS~Ws~~F~DfLk~cL~Kn--p~~Rp~aaqll~  288 (1187)
T KOG0579|consen  256 LQPSHWSRSFSDFLKRCLVKN--PRNRPPAAQLLK  288 (1187)
T ss_pred             cCcchhhhHHHHHHHHHHhcC--CccCCCHHHHhh
Confidence            446678899999999999999  889999999885

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.97  E-value=3.2e-30  Score=263.36  Aligned_cols=216  Identities=23%  Similarity=0.323  Sum_probs=177.1

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      ..+|.|+||.||++..  ++..||+|.+...    .....+.+|+.+++.++||||+++++++.+  ..++||||+++++
T Consensus         6 ~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~   85 (256)
T cd08530           6 KKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEYAPFGD   85 (256)
T ss_pred             eeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehhcCCCC
Confidence            4567899999999987  6789999998732    223567889999999999999999998865  7899999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++....      .....+++..+..++.+++.||.|||+   .+++|+||+|+||+++.++.+||+|||++..    
T Consensus        86 L~~~~~~~~------~~~~~~~~~~~~~~~~~l~~al~~lh~---~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~  156 (256)
T cd08530          86 LSKAISKRK------KKRKLIPEQEIWRIFIQLLRGLQALHE---QKILHRDLKSANILLVANDLVKIGDLGISKVLKKN  156 (256)
T ss_pred             HHHHHHHHH------hhcCCCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCcceEEEecCCcEEEeeccchhhhccC
Confidence            999985431      234678999999999999999999999   6799999999999999999999999998743    


Q ss_pred             -------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHH
Q 005680          491 -------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAG  551 (683)
Q Consensus       491 -------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~  551 (683)
                                         ..++.++|+||||+++|+|++|+.||.....     ......+.....+..+...+.++.+
T Consensus       157 ~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  231 (256)
T cd08530         157 MAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSM-----QDLRYKVQRGKYPPIPPIYSQDLQN  231 (256)
T ss_pred             CcccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHHhcCCCCCCchhhCHHHHH
Confidence                               2356789999999999999999999865322     1111223333344455577889999


Q ss_pred             HHHHhhhcCCCccccccHHHHHH
Q 005680          552 IALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       552 Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ++.+||+.+  |..||++.+++.
T Consensus       232 li~~~l~~~--p~~Rp~~~~~l~  252 (256)
T cd08530         232 FIRSMLQVK--PKLRPNCDKILA  252 (256)
T ss_pred             HHHHHcCCC--cccCCCHHHHhc
Confidence            999999999  789999999875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.97  E-value=4.2e-31  Score=267.88  Aligned_cols=225  Identities=22%  Similarity=0.312  Sum_probs=185.7

Q ss_pred             HhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCCccceeccccc------ce
Q 005680          333 LATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE------LK  403 (683)
Q Consensus       333 ~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~------~~  403 (683)
                      ..|++|..+.+++|-|-.|.|-.|..  +|..+|+|++.+.   ...++|+++.-.. .|||||.++++|.+      .+
T Consensus        58 ~itedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds---~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcL  134 (400)
T KOG0604|consen   58 SITEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDS---PKARREVELHWMASGHPHIVSIIDVYENSYQGRKCL  134 (400)
T ss_pred             cchhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcC---HHHHhHhhhhhhhcCCCceEEeehhhhhhccCceee
Confidence            56889999999999999999999987  7899999999633   4668999987776 69999999999976      45


Q ss_pred             eEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC---CCcE
Q 005680          404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR---NLVA  480 (683)
Q Consensus       404 ~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~---~~~~  480 (683)
                      .+|||.|+||.|...+...        ....+++.++..|+.||+.|+.|||+   .+|.||||||+|+|...   |..+
T Consensus       135 LiVmE~meGGeLfsriq~~--------g~~afTErea~eI~~qI~~Av~~lH~---~nIAHRDlKpENLLyt~t~~na~l  203 (400)
T KOG0604|consen  135 LIVMECMEGGELFSRIQDR--------GDQAFTEREASEIMKQIGLAVRYLHS---MNIAHRDLKPENLLYTTTSPNAPL  203 (400)
T ss_pred             EeeeecccchHHHHHHHHc--------ccccchHHHHHHHHHHHHHHHHHHHh---cchhhccCChhheeeecCCCCcce
Confidence            7899999999999999644        45679999999999999999999999   77999999999999964   5689


Q ss_pred             EEecCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC
Q 005680          481 KISGLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG  536 (683)
Q Consensus       481 KL~DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~  536 (683)
                      ||+|||+|+.                        ..|+..+|+||+|||+|-|++|.|||..... .....+....+..+
T Consensus       204 KLtDfGFAK~t~~~~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg-~aispgMk~rI~~g  282 (400)
T KOG0604|consen  204 KLTDFGFAKETQEPGDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHG-LAISPGMKRRIRTG  282 (400)
T ss_pred             EecccccccccCCCccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCC-ccCChhHHhHhhcc
Confidence            9999999965                        3578899999999999999999999975433 22233333333333


Q ss_pred             CCCCCC----hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          537 NAGIWP----LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       537 ~~~~~p----~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                       ...+|    ..+++...++|+.+|..+  |.+|.|+.+++..
T Consensus       283 -qy~FP~pEWs~VSe~aKdlIR~LLkt~--PteRlTI~~~m~h  322 (400)
T KOG0604|consen  283 -QYEFPEPEWSCVSEAAKDLIRKLLKTE--PTERLTIEEVMDH  322 (400)
T ss_pred             -CccCCChhHhHHHHHHHHHHHHHhcCC--chhheeHHHhhcC
Confidence             22222    258899999999999999  8899999888653

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.97  E-value=2.7e-30  Score=271.07  Aligned_cols=222  Identities=20%  Similarity=0.261  Sum_probs=170.2

Q ss_pred             CccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceecccc----cceeEE
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCS----ELKCIV  406 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~----~~~~LV  406 (683)
                      +|... +.+|.|+||.||+|.+  +++.||||.+....    ....+.+|+.++.+++||||+++++++.    +..|||
T Consensus         6 ~y~~~-~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv   84 (293)
T cd07843           6 EYEKL-NRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMV   84 (293)
T ss_pred             hhhhh-hhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEE
Confidence            44443 5567899999999998  57899999987221    2235678999999999999999999874    478999


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      |||++ ++|.+++...         ...+++..+..++.||+.||.|||+   .+|+|+||||+|||++.++.+||+|||
T Consensus        85 ~e~~~-~~L~~~~~~~---------~~~l~~~~~~~i~~qi~~aL~~LH~---~~i~H~dl~p~nili~~~~~~~l~d~g  151 (293)
T cd07843          85 MEYVE-HDLKSLMETM---------KQPFLQSEVKCLMLQLLSGVAHLHD---NWILHRDLKTSNLLLNNRGILKICDFG  151 (293)
T ss_pred             ehhcC-cCHHHHHHhc---------cCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCCHHHEEECCCCcEEEeecC
Confidence            99997 5999988422         2368999999999999999999999   679999999999999999999999999


Q ss_pred             Cccc--------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHH----------HH
Q 005680          487 LNIC--------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQT----------TL  530 (683)
Q Consensus       487 la~~--------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~----------~~  530 (683)
                      ++..                          ..++.++|+||||+++|+|++|.+||............          ..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~  231 (293)
T cd07843         152 LAREYGSPLKPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKIFKLLGTPTEKIW  231 (293)
T ss_pred             ceeeccCCccccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchHHH
Confidence            8642                          12467899999999999999999998642211000000          00


Q ss_pred             HHH--hc-------------CCCCCCChh-hHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          531 MQV--LD-------------GNAGIWPLD-LAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       531 ~~i--ld-------------~~~~~~p~~-~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ...  +.             .....++.. +++.+.+++.+||+.+  |++|||+.+++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--p~~R~t~~ell~  289 (293)
T cd07843         232 PGFSELPGAKKKTFTKYPYNQLRKKFPALSLSDNGFDLLNRLLTYD--PAKRISAEDALK  289 (293)
T ss_pred             HHhhccchhcccccccccchhhhccccccCCChHHHHHHHHHhccC--ccccCCHHHHhc
Confidence            000  00             001122222 5788999999999999  889999999875

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.97  E-value=3.8e-30  Score=270.50  Aligned_cols=223  Identities=17%  Similarity=0.193  Sum_probs=171.7

Q ss_pred             hhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc------
Q 005680          334 ATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE------  401 (683)
Q Consensus       334 at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~------  401 (683)
                      +.++|... ..+|.|+||.||+|..  +|..||||.++..    .....+.+|+.+++.++||||+++++++.+      
T Consensus         5 ~~~~~~~~-~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~   83 (302)
T cd07864           5 CVDKFDII-GQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALD   83 (302)
T ss_pred             hhhhhhee-eeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhh
Confidence            34555544 4568899999999998  5889999999722    233567889999999999999999998854      


Q ss_pred             ------ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccccc
Q 005680          402 ------LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD  475 (683)
Q Consensus       402 ------~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld  475 (683)
                            ..++|+||+++ +|.+.+.         .....+++..+..++.||+.||.|||+   .+|+|+||||+||+++
T Consensus        84 ~~~~~~~~~lv~e~~~~-~l~~~l~---------~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~i~H~dl~p~nili~  150 (302)
T cd07864          84 FKKDKGAFYLVFEYMDH-DLMGLLE---------SGLVHFSEDHIKSFMKQLLEGLNYCHK---KNFLHRDIKCSNILLN  150 (302)
T ss_pred             ccccCCcEEEEEcccCc-cHHHHHh---------cCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEC
Confidence                  47899999985 7777763         223468999999999999999999999   6799999999999999


Q ss_pred             CCCcEEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHH
Q 005680          476 RNLVAKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQT  528 (683)
Q Consensus       476 ~~~~~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~  528 (683)
                      .++.+||+|||++..                           ..++.++|||||||++|+|++|++||.......  ...
T Consensus       151 ~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~--~~~  228 (302)
T cd07864         151 NKGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQELA--QLE  228 (302)
T ss_pred             CCCcEEeCcccccccccCCcccccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCChHH--HHH
Confidence            999999999998742                           124678999999999999999999996432210  000


Q ss_pred             HHHHHhcCC-CC-------------------------CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          529 TLMQVLDGN-AG-------------------------IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       529 ~~~~ild~~-~~-------------------------~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .+....... ..                         .....++..+.+++.+||..|  |..||++.+++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--P~~Rp~~~~il~  298 (302)
T cd07864         229 LISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLD--PSKRCTAEEALN  298 (302)
T ss_pred             HHHHHhCCCChhhcccccccccccccccccccccchhhhcCCCCHHHHHHHHHHccCC--hhhCCCHHHHhc
Confidence            111111000 00                         011235788999999999999  889999988874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.97  E-value=3.2e-30  Score=273.04  Aligned_cols=222  Identities=21%  Similarity=0.241  Sum_probs=170.2

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc----ceeE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE----LKCI  405 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----~~~L  405 (683)
                      ++|... +++|.|+||.||+|..  +|..||+|.+....    ....+.+|+.++.+++|+||+++++++.+    ..++
T Consensus         7 ~~y~~~-~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (309)
T cd07845           7 TEFEKL-NRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFL   85 (309)
T ss_pred             cceeEe-eeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEE
Confidence            445443 4568999999999998  58999999986221    12356789999999999999999998853    5799


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecC
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGL  485 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DF  485 (683)
                      ||||+. ++|.+++..         ....+++..+..++.||+.||.|||+   .+++||||||+||+++.++.+||+||
T Consensus        86 v~e~~~-~~l~~~l~~---------~~~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~kL~df  152 (309)
T cd07845          86 VMEYCE-QDLASLLDN---------MPTPFSESQVKCLMLQLLRGLQYLHE---NFIIHRDLKVSNLLLTDKGCLKIADF  152 (309)
T ss_pred             EEecCC-CCHHHHHHh---------cccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEECcc
Confidence            999997 588888842         23568999999999999999999999   67999999999999999999999999


Q ss_pred             CCccc--------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhc----
Q 005680          486 GLNIC--------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLD----  535 (683)
Q Consensus       486 Gla~~--------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild----  535 (683)
                      |++..                          ..++.++|||||||++|+|++|.+||.........  ..+...+.    
T Consensus       153 g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~~~~~~~--~~~~~~~~~~~~  230 (309)
T cd07845         153 GLARTYGLPAKPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSEIEQL--DLIIQLLGTPNE  230 (309)
T ss_pred             ceeeecCCccCCCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHH--HHHHHhcCCCCh
Confidence            98742                          12567899999999999999999999643221000  00000000    


Q ss_pred             -------------C-CCCCCC--------hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          536 -------------G-NAGIWP--------LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       536 -------------~-~~~~~p--------~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                                   . .....+        ...++.+.++|.+||+.|  |.+|||+.+++..
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~d--p~~R~t~~~il~h  290 (309)
T cd07845         231 SIWPGFSDLPLVGKFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYD--PKKRATAEEALES  290 (309)
T ss_pred             hhchhhhcccccccccccCCCCCchHHhccccCHHHHHHHHHHhcCC--hhhCcCHHHHhcC
Confidence                         0 000000        124678899999999999  8899999988753

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=1.3e-31  Score=311.66  Aligned_cols=212  Identities=22%  Similarity=0.318  Sum_probs=180.3

Q ss_pred             ccccCCceEEEEEEE--CCeeEEEEEcCC----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCc
Q 005680          344 LKCAGDWTNVYRGRL--NHASVAIKTLNN----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNL  415 (683)
Q Consensus       344 liG~G~fG~Vykg~~--~g~~VAvK~l~~----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL  415 (683)
                      .||+|.||.||.|..  +|...|+|-+..    ......+.+|+.+|..|+|||+|++||+-.+  ..+|.||||.+|+|
T Consensus      1242 ~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFMEyC~~GsL 1321 (1509)
T KOG4645|consen 1242 FIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFMEYCEGGSL 1321 (1509)
T ss_pred             ccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHHHHHHhccCcH
Confidence            456899999999997  789999999872    2223568899999999999999999998755  78999999999999


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-----
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-----  490 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-----  490 (683)
                      .+.+.          ....+++.....+..|++.||+|||+   .|||||||||.||||+.+|.+|++|||.|..     
T Consensus      1322 a~ll~----------~gri~dE~vt~vyt~qll~gla~LH~---~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~ 1388 (1509)
T KOG4645|consen 1322 ASLLE----------HGRIEDEMVTRVYTKQLLEGLAYLHE---HGIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNA 1388 (1509)
T ss_pred             HHHHH----------hcchhhhhHHHHHHHHHHHHHHHHHh---cCceecCCCccceeeecCCcEEeecccceeEecCch
Confidence            99993          44567888888899999999999999   5599999999999999999999999999853     


Q ss_pred             ---------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCCh
Q 005680          491 ---------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPL  543 (683)
Q Consensus       491 ---------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~  543 (683)
                                                 .+...+.||||||||++||+||+.|+...+.    +-..+..+..+..+..|.
T Consensus      1389 ~~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dn----e~aIMy~V~~gh~Pq~P~ 1464 (1509)
T KOG4645|consen 1389 QTMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDN----EWAIMYHVAAGHKPQIPE 1464 (1509)
T ss_pred             hcCCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccc----hhHHHhHHhccCCCCCch
Confidence                                       2344679999999999999999999865332    233455666678889999


Q ss_pred             hhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          544 DLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       544 ~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .++.+-.+++..||+.|  |..|.++.++++
T Consensus      1465 ~ls~~g~dFle~Cl~~d--P~~Rw~~~qlle 1493 (1509)
T KOG4645|consen 1465 RLSSEGRDFLEHCLEQD--PKMRWTASQLLE 1493 (1509)
T ss_pred             hhhHhHHHHHHHHHhcC--chhhhHHHHHHH
Confidence            99999999999999999  779988876654

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.97  E-value=3.4e-30  Score=278.69  Aligned_cols=222  Identities=17%  Similarity=0.224  Sum_probs=170.0

Q ss_pred             hcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc-------
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-------  401 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-------  401 (683)
                      .+.|.. .+.+|.|+||.||+|..  +|..||||.+...    .....+.+|+.++++++||||++++++|..       
T Consensus        15 ~~~y~~-~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   93 (353)
T cd07850          15 LKRYQN-LKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEF   93 (353)
T ss_pred             hcceEE-EEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCcccc
Confidence            355554 46778999999999997  6899999998632    223567789999999999999999998742       


Q ss_pred             -ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcE
Q 005680          402 -LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVA  480 (683)
Q Consensus       402 -~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~  480 (683)
                       ..|+||||+. ++|.+.+.          ..  ++...+..++.|++.||.|||+   .+|+||||||+|||++.++.+
T Consensus        94 ~~~~lv~e~~~-~~l~~~~~----------~~--l~~~~~~~~~~ql~~aL~~LH~---~gi~H~dlkp~Nil~~~~~~~  157 (353)
T cd07850          94 QDVYLVMELMD-ANLCQVIQ----------MD--LDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTL  157 (353)
T ss_pred             CcEEEEEeccC-CCHHHHHh----------hc--CCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEECCCCCE
Confidence             4689999996 58888772          22  8899999999999999999999   679999999999999999999


Q ss_pred             EEecCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh---------H
Q 005680          481 KISGLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD---------Q  527 (683)
Q Consensus       481 KL~DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~---------~  527 (683)
                      ||+|||+++.                        ..++.++|||||||++|+|++|+.||..........         .
T Consensus       158 kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~  237 (353)
T cd07850         158 KILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTDHIDQWNKIIEQLGTPS  237 (353)
T ss_pred             EEccCccceeCCCCCCCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCC
Confidence            9999998753                        246788999999999999999999985322100000         0


Q ss_pred             H--------HHHHHhcCCC--------------------CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          528 T--------TLMQVLDGNA--------------------GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       528 ~--------~~~~ild~~~--------------------~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .        ..........                    ...+...+..+.+++.+||+.|  |..|||+.+++..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~R~t~~eiL~~  311 (353)
T cd07850         238 DEFMSRLQPTVRNYVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVID--PEKRISVDDALQH  311 (353)
T ss_pred             HHHHHHhhhhhhHHhhcCCCCCCcchhhhCcccccCcccccccccchhHHHHHHHHHcCCC--hhhCcCHHHHhcC
Confidence            0        0000000000                    0001234677899999999999  8899999999864

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.97  E-value=2.6e-30  Score=277.29  Aligned_cols=223  Identities=14%  Similarity=0.211  Sum_probs=172.7

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc------ce
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE------LK  403 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~------~~  403 (683)
                      .+|... +.+|.|+||.||+|..  +|..||+|++...    .....+.+|+.+|.+++||||+++++++..      ..
T Consensus         5 ~~y~~~-~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   83 (334)
T cd07855           5 SRYKPI-ENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDV   83 (334)
T ss_pred             hceeee-eeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceE
Confidence            455543 5678999999999997  6899999998732    234567889999999999999999998742      57


Q ss_pred             eEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEe
Q 005680          404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKIS  483 (683)
Q Consensus       404 ~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~  483 (683)
                      ++||||+. |+|.+++          .....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+
T Consensus        84 ~lv~e~~~-~~l~~~~----------~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~Nil~~~~~~~kl~  149 (334)
T cd07855          84 YVVMDLME-SDLHHII----------HSDQPLTEEHIRYFLYQLLRGLKYIHS---ANVIHRDLKPSNLLVNEDCELRIG  149 (334)
T ss_pred             EEEEehhh-hhHHHHh----------ccCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCcEEec
Confidence            89999996 6898888          344569999999999999999999999   679999999999999999999999


Q ss_pred             cCCCccc------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhh--------
Q 005680          484 GLGLNIC------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMAL--------  525 (683)
Q Consensus       484 DFGla~~------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~--------  525 (683)
                      |||++..                              ..++.++|||||||++|+|++|++||.........        
T Consensus       150 dfg~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~~~~~~~~~~g  229 (334)
T cd07855         150 DFGMARGLSSSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLG  229 (334)
T ss_pred             ccccceeecccCcCCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCChHHHHHHHHHHhC
Confidence            9998732                              13567899999999999999999999532110000        


Q ss_pred             ----------hHHHHHHHhcC--CCCCC-----ChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          526 ----------DQTTLMQVLDG--NAGIW-----PLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       526 ----------~~~~~~~ild~--~~~~~-----p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                                .........+.  .....     .+..+..+.+++.+||+.+  |..|||+.+++..
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--P~~Rpt~~~~l~~  294 (334)
T cd07855         230 SPSEEVLNRIGSDRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFD--PEERITVEQALQH  294 (334)
T ss_pred             CChhHhhhhhchhhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCC--hhhCcCHHHHHhC
Confidence                      00001111111  11111     1245788999999999999  8899999988764

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.97  E-value=2.5e-30  Score=276.73  Aligned_cols=216  Identities=19%  Similarity=0.213  Sum_probs=167.0

Q ss_pred             cCCceEEEEEEE--CCeeEEEEEcCCCC-C---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCchhh
Q 005680          347 AGDWTNVYRGRL--NHASVAIKTLNNGL-S---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRDK  418 (683)
Q Consensus       347 ~G~fG~Vykg~~--~g~~VAvK~l~~~~-~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~~  418 (683)
                      .|+||+||++.+  +|+.||||++.... .   .+.+.+|+.+++.++||||++++++|..  ..++||||+++|+|.++
T Consensus        10 ~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~~~l~~~   89 (328)
T cd08226          10 FCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAYGSANSL   89 (328)
T ss_pred             ccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccCCCHHHH
Confidence            348999999998  78999999987322 2   3568899999999999999999999965  78999999999999999


Q ss_pred             hhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--------
Q 005680          419 LFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--------  490 (683)
Q Consensus       419 L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--------  490 (683)
                      +...        ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.++++|||.+..        
T Consensus        90 l~~~--------~~~~~~~~~~~~~~~qi~~aL~~lH~---~~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~  158 (328)
T cd08226          90 LKTY--------FPEGMSEALIGNILFGALRGLNYLHQ---NGYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKA  158 (328)
T ss_pred             HHhh--------cccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEeCCCcEEEechHHHhhhhccCccc
Confidence            8533        23458999999999999999999999   6799999999999999999999999963210        


Q ss_pred             --------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHH---------------
Q 005680          491 --------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTT---------------  529 (683)
Q Consensus       491 --------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~---------------  529 (683)
                                                ..++.++|||||||++|+|++|++||.............               
T Consensus       159 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (328)
T cd08226         159 KVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRTQMLLQKLKGPPYSPLDITTFPC  238 (328)
T ss_pred             cccccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcChHHHHHHHhcCCCCCCccccccch
Confidence                                      125678999999999999999999996432110000000               


Q ss_pred             -HHH---------------H---------hc-CCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          530 -LMQ---------------V---------LD-GNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       530 -~~~---------------i---------ld-~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                       ...               .         .. ......+..++..+.+|+.+||+.|  |..|||+.++++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~d--P~~Rpta~e~l~~  308 (328)
T cd08226         239 EESRMKNSQSGVDSGIGESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQD--PEKRPSASSLLSH  308 (328)
T ss_pred             hhhhhccchhhhhcccccchhccccccccccccccchhhhhhhHHHHHHHHHHccCC--cccCCCHHHHhhC
Confidence             000               0         00 0001112346788999999999999  7899999999864

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.97  E-value=4.6e-30  Score=270.28  Aligned_cols=221  Identities=15%  Similarity=0.234  Sum_probs=166.7

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc--------
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--------  401 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--------  401 (683)
                      ++|... +.+|.|+||.||+|..  ++..||||.+...    .....+.+|+.++++++||||++++++|..        
T Consensus        12 ~~y~~~-~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   90 (310)
T cd07865          12 SKYEKL-AKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRY   90 (310)
T ss_pred             hheEEE-EEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCC
Confidence            345443 5568999999999998  6899999998622    123456789999999999999999998743        


Q ss_pred             --ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc
Q 005680          402 --LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV  479 (683)
Q Consensus       402 --~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~  479 (683)
                        ..++||||+. ++|.+++.         .....+++..+..++.||+.||.|||+   .+++|+||||+|||++.++.
T Consensus        91 ~~~~~lv~e~~~-~~l~~~l~---------~~~~~~~~~~~~~i~~qi~~al~~lH~---~~i~H~dl~p~nil~~~~~~  157 (310)
T cd07865          91 KGSFYLVFEFCE-HDLAGLLS---------NKNVKFTLSEIKKVMKMLLNGLYYIHR---NKILHRDMKAANILITKDGI  157 (310)
T ss_pred             CceEEEEEcCCC-cCHHHHHH---------hcccCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEECCCCc
Confidence              3499999997 58888773         223468999999999999999999999   67999999999999999999


Q ss_pred             EEEecCCCccc------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHH
Q 005680          480 AKISGLGLNIC------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTT  529 (683)
Q Consensus       480 ~KL~DFGla~~------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~  529 (683)
                      +||+|||++..                              ..++.++||||||+++|+|+||++||.......  ....
T Consensus       158 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~~~~--~~~~  235 (310)
T cd07865         158 LKLADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQH--QLTL  235 (310)
T ss_pred             EEECcCCCcccccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCCHHH--HHHH
Confidence            99999997732                              124678999999999999999999985422110  0000


Q ss_pred             HHHHhcC-----------------CC--C---------CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          530 LMQVLDG-----------------NA--G---------IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       530 ~~~ild~-----------------~~--~---------~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +..+...                 ..  .         ..+...+..+.+||.+||..|  |..|||+.+++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~--P~~R~t~~e~l~  306 (310)
T cd07865         236 ISQLCGSITPEVWPGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLD--PAKRIDADTALN  306 (310)
T ss_pred             HHHHhCCCChhhcccccchhhhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcCC--hhhccCHHHHhc
Confidence            0110000                 00  0         001112456789999999999  889999999874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.97  E-value=3.3e-30  Score=276.20  Aligned_cols=221  Identities=17%  Similarity=0.243  Sum_probs=172.1

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCCH----------------HHHHHHHHHHHhcCCCCccceec
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSE----------------EDFQAKVSFLTAVRHPHLVAVMG  397 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~----------------~~~~~Ev~iL~~l~HpnIV~l~g  397 (683)
                      +.|....+++|.|+||.||+|..  .+..||||.+......                ..+.+|+.+++.++||||+++++
T Consensus         8 ~ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~   87 (335)
T PTZ00024          8 ERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVD   87 (335)
T ss_pred             cchhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeE
Confidence            44555556789999999999997  5899999998622111                24778999999999999999999


Q ss_pred             cccc--ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccccc
Q 005680          398 CCSE--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD  475 (683)
Q Consensus       398 ~~~~--~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld  475 (683)
                      ++..  ..++||||+. |+|.+++.          ....+++.....++.|++.||.|||+   .+|+|+||+|+|||++
T Consensus        88 ~~~~~~~~~lv~e~~~-~~l~~~l~----------~~~~~~~~~~~~~~~ql~~aL~~LH~---~~i~H~dl~~~nill~  153 (335)
T PTZ00024         88 VYVEGDFINLVMDIMA-SDLKKVVD----------RKIRLTESQVKCILLQILNGLNVLHK---WYFMHRDLSPANIFIN  153 (335)
T ss_pred             EEecCCcEEEEEeccc-cCHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHh---CCeecccccHHHeEEC
Confidence            9855  7899999997 68999883          44568999999999999999999999   6799999999999999


Q ss_pred             CCCcEEEecCCCccc----------------------------------------cCCCcccccccHHHHHHHHhhCCCC
Q 005680          476 RNLVAKISGLGLNIC----------------------------------------DQLNVRSDIRAFGTLLLHLLTGRNW  515 (683)
Q Consensus       476 ~~~~~KL~DFGla~~----------------------------------------~~~t~ksDVwSlGviL~eLltG~~P  515 (683)
                      .++.+||+|||++..                                        ..++.++|||||||++|+|+||.+|
T Consensus       154 ~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p  233 (335)
T PTZ00024        154 SKGICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPL  233 (335)
T ss_pred             CCCCEEECCccceeecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence            999999999997632                                        1246789999999999999999999


Q ss_pred             chhhHHHhhhhHHHHHHHhc-CCCC-----------------------CCChhhHHHHHHHHHHhhhcCCCccccccHHH
Q 005680          516 AGLVEKAMALDQTTLMQVLD-GNAG-----------------------IWPLDLAEELAGIALKCLSADQDANRDLRIAG  571 (683)
Q Consensus       516 f~~~~~~~~~~~~~~~~ild-~~~~-----------------------~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~e  571 (683)
                      |.........  ..+...+. +...                       ......+..+.+++.+||..+  |..|||+.+
T Consensus       234 ~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--P~~R~s~~~  309 (335)
T PTZ00024        234 FPGENEIDQL--GRIFELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLN--PLERISAKE  309 (335)
T ss_pred             CCCCCHHHHH--HHHHHHhCCCchhhCcchhhcccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCC--chhccCHHH
Confidence            8643221000  00001000 0000                       001234678999999999999  889999999


Q ss_pred             HHH
Q 005680          572 VMK  574 (683)
Q Consensus       572 Vl~  574 (683)
                      ++.
T Consensus       310 ~l~  312 (335)
T PTZ00024        310 ALK  312 (335)
T ss_pred             Hhc
Confidence            885

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.97  E-value=2.5e-30  Score=278.07  Aligned_cols=222  Identities=17%  Similarity=0.243  Sum_probs=172.8

Q ss_pred             CccccccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc-------ce
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-------LK  403 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-------~~  403 (683)
                      .|.. .+.+|.|+||.||+|..  +|..||||.+...    .....+.+|+.+++.++||||+++++++..       ..
T Consensus         6 ~y~~-~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~   84 (337)
T cd07858           6 KYVP-IKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFNDV   84 (337)
T ss_pred             ceeE-EEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCcE
Confidence            3433 45778999999999997  6899999998632    233567889999999999999999998753       36


Q ss_pred             eEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEe
Q 005680          404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKIS  483 (683)
Q Consensus       404 ~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~  483 (683)
                      |+||||+. ++|.+++          .....+++..+..++.||+.||.|||+   .+++||||||+||+++.++.+||+
T Consensus        85 ~lv~e~~~-~~L~~~~----------~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~i~H~dlkp~Nil~~~~~~~kL~  150 (337)
T cd07858          85 YIVYELMD-TDLHQII----------RSSQTLSDDHCQYFLYQLLRGLKYIHS---ANVLHRDLKPSNLLLNANCDLKIC  150 (337)
T ss_pred             EEEEeCCC-CCHHHHH----------hcCCCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEcCCCCEEEC
Confidence            99999996 7898888          344679999999999999999999999   679999999999999999999999


Q ss_pred             cCCCccc--------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhh-------------
Q 005680          484 GLGLNIC--------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMA-------------  524 (683)
Q Consensus       484 DFGla~~--------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~-------------  524 (683)
                      |||++..                          ..++.++|||||||++|+|++|++||........             
T Consensus       151 Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~  230 (337)
T cd07858         151 DFGLARTTSEKGDFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSE  230 (337)
T ss_pred             cCccccccCCCcccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCCh
Confidence            9998742                          1356789999999999999999999853211000             


Q ss_pred             -----hhHHHHHHHhcC--C-----CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          525 -----LDQTTLMQVLDG--N-----AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       525 -----~~~~~~~~ild~--~-----~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                           .........+..  .     .....+.+++.+.+++.+||+.+  |.+|||+.+++..
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--P~~Rps~~ell~h  291 (337)
T cd07858         231 EDLGFIRNEKARRYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFD--PSKRITVEEALAH  291 (337)
T ss_pred             HHhhhcCchhhhHHHHhcCcccccCHHHHcccCCHHHHHHHHHHhcCC--hhhccCHHHHHcC
Confidence                 000000001100  0     01112356788999999999999  8899999999876

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.97  E-value=2.9e-30  Score=277.18  Aligned_cols=223  Identities=18%  Similarity=0.232  Sum_probs=170.4

Q ss_pred             hcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC---CCHHHHHHHHHHHHhcCCCCccceeccccc-------c
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG---LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-------L  402 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~---~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-------~  402 (683)
                      +++|.. .+.+|.|+||.||+|..  +|..||||.+...   .....+.+|+.++++++||||+++++++..       .
T Consensus         4 ~~~y~i-~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~   82 (336)
T cd07849           4 GPRYQN-LSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFND   82 (336)
T ss_pred             ccceEE-EEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccce
Confidence            345654 45678999999999987  6899999998622   233567889999999999999999987643       4


Q ss_pred             eeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEE
Q 005680          403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKI  482 (683)
Q Consensus       403 ~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL  482 (683)
                      .|+|+||++ ++|.+++           ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||
T Consensus        83 ~~lv~e~~~-~~l~~~~-----------~~~~l~~~~~~~i~~ql~~aL~~LH~---~~ivH~dlkp~Nill~~~~~~kl  147 (336)
T cd07849          83 VYIVQELME-TDLYKLI-----------KTQHLSNDHIQYFLYQILRGLKYIHS---ANVLHRDLKPSNLLLNTNCDLKI  147 (336)
T ss_pred             EEEEehhcc-cCHHHHH-----------hcCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHEEECCCCCEEE
Confidence            689999997 5887777           23468999999999999999999999   67999999999999999999999


Q ss_pred             ecCCCccc-----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhh---------
Q 005680          483 SGLGLNIC-----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMA---------  524 (683)
Q Consensus       483 ~DFGla~~-----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~---------  524 (683)
                      +|||++..                             ..++.++|||||||++|+|++|++||........         
T Consensus       148 ~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~~~~~~~~~~~~~  227 (336)
T cd07849         148 CDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYLHQLNLILGVLG  227 (336)
T ss_pred             CcccceeeccccccccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcC
Confidence            99998732                             1356789999999999999999999853211000         


Q ss_pred             -hhHHHHHHHhcC----------CCCC--C---ChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          525 -LDQTTLMQVLDG----------NAGI--W---PLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       525 -~~~~~~~~ild~----------~~~~--~---p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                       .....+..+...          ....  +   .+..+..+.+++.+||+.|  |.+|||+.+++..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~d--P~~Rpt~~e~l~h  292 (336)
T cd07849         228 TPSQEDLNCIISLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFN--PHKRITVEEALAH  292 (336)
T ss_pred             CCCHHHHHHhhchhhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCC--hhhCcCHHHHhcC
Confidence             000111111110          0000  0   1234678999999999999  8899999998875

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.97  E-value=6.3e-30  Score=260.60  Aligned_cols=206  Identities=24%  Similarity=0.310  Sum_probs=171.9

Q ss_pred             cccCCceEEEEEEE--CCeeEEEEEcCCCC-----CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCc
Q 005680          345 KCAGDWTNVYRGRL--NHASVAIKTLNNGL-----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNL  415 (683)
Q Consensus       345 iG~G~fG~Vykg~~--~g~~VAvK~l~~~~-----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL  415 (683)
                      +|.|+||.||++..  ++..||+|.+....     ....+..|+.++++++||||+++++.+.+  ..++||||+++++|
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   80 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGEL   80 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcH
Confidence            47899999999998  48999999987322     33578899999999999999999999865  78999999999999


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-----
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-----  490 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-----  490 (683)
                      .+++.          ....+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++..     
T Consensus        81 ~~~l~----------~~~~l~~~~~~~~~~qi~~~l~~lh~---~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~  147 (250)
T cd05123          81 FSHLS----------KEGRFSEERARFYAAEIVLALEYLHS---LGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEG  147 (250)
T ss_pred             HHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCcceEEEcCCCcEEEeecCcceecccCC
Confidence            99993          44468999999999999999999999   6799999999999999999999999998742     


Q ss_pred             --------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHH
Q 005680          491 --------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELA  550 (683)
Q Consensus       491 --------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~  550 (683)
                                          ...+.++|+||||+++|+|++|..||.....     ......+.. ....+|...+..+.
T Consensus       148 ~~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~l~  221 (250)
T cd05123         148 SRTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDR-----KEIYEKILK-DPLRFPEFLSPEAR  221 (250)
T ss_pred             CcccCCcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH-----HHHHHHHhc-CCCCCCCCCCHHHH
Confidence                                1245789999999999999999999965322     112222222 34456667789999


Q ss_pred             HHHHHhhhcCCCccccccHHH
Q 005680          551 GIALKCLSADQDANRDLRIAG  571 (683)
Q Consensus       551 ~Li~~CL~~dP~p~~RPs~~e  571 (683)
                      +++.+||..|  |..||++.+
T Consensus       222 ~~i~~~l~~~--p~~R~~~~~  240 (250)
T cd05123         222 DLISGLLQKD--PTKRLGSGG  240 (250)
T ss_pred             HHHHHHhcCC--HhhCCCccc
Confidence            9999999999  789999854

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=2e-30  Score=264.64  Aligned_cols=228  Identities=21%  Similarity=0.275  Sum_probs=187.5

Q ss_pred             cCHHHHHHhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcC--CCCCHHHHHHHHHHHHhc-CCCCccceecccc
Q 005680          326 YAAEDIRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN--NGLSEEDFQAKVSFLTAV-RHPHLVAVMGCCS  400 (683)
Q Consensus       326 ~s~~ei~~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~--~~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~  400 (683)
                      -.|.++...|.      .++|+|+||.|--+..  +|..+|||++.  ......++.+|++++..+ .|+||++|+.+|.
T Consensus        73 g~F~d~YkLt~------e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFE  146 (463)
T KOG0607|consen   73 GKFEDMYKLTS------ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFE  146 (463)
T ss_pred             chHHHHHHhHH------HHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhc
Confidence            34677777665      4789999999999886  89999999997  444567899999999999 5999999999998


Q ss_pred             c--ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCC
Q 005680          401 E--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL  478 (683)
Q Consensus       401 ~--~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~  478 (683)
                      +  .+|||||-|.||+|..+|          .....+++.++.+++.+|+.||.|||.   +||.||||||+|||.....
T Consensus       147 dd~~FYLVfEKm~GGplLshI----------~~~~~F~E~EAs~vvkdia~aLdFlH~---kgIAHRDlKPENiLC~~pn  213 (463)
T KOG0607|consen  147 DDTRFYLVFEKMRGGPLLSHI----------QKRKHFNEREASRVVKDIASALDFLHT---KGIAHRDLKPENILCESPN  213 (463)
T ss_pred             ccceEEEEEecccCchHHHHH----------HHhhhccHHHHHHHHHHHHHHHHHHhh---cCcccccCCccceeecCCC
Confidence            7  899999999999999999          466789999999999999999999999   8899999999999996543


Q ss_pred             ---cEEEecCCCccc-------------------------------------cCCCcccccccHHHHHHHHhhCCCCchh
Q 005680          479 ---VAKISGLGLNIC-------------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGL  518 (683)
Q Consensus       479 ---~~KL~DFGla~~-------------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~  518 (683)
                         -+|||||.|...                                     ..|+.++|.||||||||-||+|.+||..
T Consensus       214 ~vsPvKiCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG  293 (463)
T KOG0607|consen  214 KVSPVKICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVG  293 (463)
T ss_pred             CcCceeeeccccccccccCCCCCCCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccC
Confidence               589999988632                                     2488999999999999999999999942


Q ss_pred             h-----HH----HhhhhHHHHHHHhcCCCCCCCh----hhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          519 V-----EK----AMALDQTTLMQVLDGNAGIWPL----DLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       519 ~-----~~----~~~~~~~~~~~ild~~~~~~p~----~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .     .|    ....-+..+...+......+|.    .++.+..+++..+|..|  +..|.++.+++.
T Consensus       294 ~Cg~dCGWdrGe~Cr~CQ~~LFesIQEGkYeFPdkdWahIS~eakdlisnLlvrd--a~~rlsa~~vln  360 (463)
T KOG0607|consen  294 HCGADCGWDRGEVCRVCQNKLFESIQEGKYEFPDKDWAHISSEAKDLISNLLVRD--AKQRLSAAQVLN  360 (463)
T ss_pred             ccCCcCCccCCCccHHHHHHHHHHHhccCCcCChhhhHHhhHHHHHHHHHHHhcc--HHhhhhhhhccC
Confidence            1     11    1112233333444444455554    48899999999999999  889999888875

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.97  E-value=6.5e-30  Score=270.17  Aligned_cols=221  Identities=19%  Similarity=0.273  Sum_probs=168.1

Q ss_pred             cccccCCceEEEEEEE----CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc----ceeEEEee
Q 005680          343 RLKCAGDWTNVYRGRL----NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE----LKCIVFEY  409 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~----~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----~~~LV~Ey  409 (683)
                      ..+|+|+||.||+|..    ++..||||.+..     ......+.+|+.++..++||||+++++++.+    ..++||||
T Consensus         6 ~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~   85 (316)
T cd07842           6 GCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVYLLFDY   85 (316)
T ss_pred             EEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEEEEEeC
Confidence            4578999999999998    468999999974     2334678899999999999999999999865    58999999


Q ss_pred             cCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC----CCcEEEecC
Q 005680          410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR----NLVAKISGL  485 (683)
Q Consensus       410 ~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~----~~~~KL~DF  485 (683)
                      ++ ++|.+++.....     .....++...+..|+.||+.||.|||+   .+|+||||||+|||++.    ++.+||+||
T Consensus        86 ~~-~~l~~~~~~~~~-----~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~h~dlkp~Nil~~~~~~~~~~~kl~Df  156 (316)
T cd07842          86 AE-HDLWQIIKFHRQ-----AKRVSIPPSMVKSLLWQILNGVHYLHS---NWVLHRDLKPANILVMGEGPERGVVKIGDL  156 (316)
T ss_pred             CC-cCHHHHHHhhcc-----CCCcCcCHHHHHHHHHHHHHHHHHHHh---CCEeeCCCCHHHEEEcCCCCccceEEECCC
Confidence            97 477777643321     123478999999999999999999999   77999999999999999    999999999


Q ss_pred             CCccc-----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHh----hhhHHHHHH
Q 005680          486 GLNIC-----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAM----ALDQTTLMQ  532 (683)
Q Consensus       486 Gla~~-----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~----~~~~~~~~~  532 (683)
                      |++..                             ..++.++|||||||++|+|++|++||.......    ......+..
T Consensus       157 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (316)
T cd07842         157 GLARLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLER  236 (316)
T ss_pred             ccccccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCcccccccchhHHHHHHH
Confidence            98642                             125678999999999999999999986322110    000000000


Q ss_pred             H---h----------------------cCCCCCCC-----------hhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          533 V---L----------------------DGNAGIWP-----------LDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       533 i---l----------------------d~~~~~~p-----------~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +   +                      ......++           ...+..+.+++.+||+.|  |..|||+.+++.
T Consensus       237 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~--P~~Rps~~eil~  312 (316)
T cd07842         237 IFEVLGTPTEKDWPDIKKMPEYDTLMKDFKTKTYPSNSLAKWMEKHKKPDSQGFDLLRKLLEYD--PTKRITAEEALE  312 (316)
T ss_pred             HHHHhCCCchhHHHHHhhcccchhhhhhccCCCCCCccHHHHHHhccCCCHHHHHHHHHHhcCC--cccCcCHHHHhc
Confidence            0   0                      00011111           034567899999999999  889999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.97  E-value=2.3e-30  Score=287.62  Aligned_cols=227  Identities=22%  Similarity=0.313  Sum_probs=174.0

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCC---CCCHHHHHHHHHHHHhcCCCCccceeccccc--------ceeEEEe
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNN---GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--------LKCIVFE  408 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~---~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--------~~~LV~E  408 (683)
                      ...+|+|+||.||+|+.  +|+.||||.++.   ....+...+|+++|++++|||||+++++-.+        ...+|||
T Consensus        18 ~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vlvmE   97 (732)
T KOG4250|consen   18 DERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVLVME   97 (732)
T ss_pred             hhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceEEEe
Confidence            35679999999999997  799999999984   3456788999999999999999999988644        4689999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccccc--C--CCcEEEec
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD--R--NLVAKISG  484 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld--~--~~~~KL~D  484 (683)
                      ||+||||...|..-       .+...|++...+.++.+++.||.|||.   .+||||||||.||++-  .  .-..||+|
T Consensus        98 yC~gGsL~~~L~~P-------EN~~GLpE~e~l~lL~d~~~al~~LrE---n~IvHRDlKP~NIvl~~Gedgq~IyKLtD  167 (732)
T KOG4250|consen   98 YCSGGSLRKVLNSP-------ENAYGLPESEFLDLLSDLVSALRHLRE---NGIVHRDLKPGNIVLQIGEDGQSIYKLTD  167 (732)
T ss_pred             ecCCCcHHHHhcCc-------ccccCCCHHHHHHHHHHHHHHHHHHHH---cCceeccCCCCcEEEeecCCCceEEeeec
Confidence            99999999999644       467789999999999999999999999   5699999999999993  2  33579999


Q ss_pred             CCCccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHh-cC--
Q 005680          485 LGLNIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVL-DG--  536 (683)
Q Consensus       485 FGla~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~il-d~--  536 (683)
                      ||.|+.                         ..|+..+|.|||||++|+++||..||-....... .......++ .+  
T Consensus       168 fG~Arel~d~s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p~~~pk~-~~~~~~~~~tkkp~  246 (732)
T KOG4250|consen  168 FGAARELDDNSLFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIPFGGPKN-NKEIMWHIITKKPS  246 (732)
T ss_pred             ccccccCCCCCeeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCcCCCccc-cchhhhhhhccCCC
Confidence            999975                         3578899999999999999999999853221100 000111111 00  


Q ss_pred             -----------------CCCCCCh----hhHHHHHHHHHHhhhcCCCccccc--cHHHHHHHHHHHHH
Q 005680          537 -----------------NAGIWPL----DLAEELAGIALKCLSADQDANRDL--RIAGVMKELDEVRK  581 (683)
Q Consensus       537 -----------------~~~~~p~----~~~~~l~~Li~~CL~~dP~p~~RP--s~~eVl~~L~~l~~  581 (683)
                                       ...++|.    .....+...+..+|..+  |+.|.  ...++...+..|..
T Consensus       247 ~v~i~~~~~eNgpv~~s~~lP~p~~Ls~~l~~~~~kwLa~~L~~~--~~~~~~~~~~~~Fa~~~dIL~  312 (732)
T KOG4250|consen  247 GVAIGAQEEENGPVEWSSTLPQPNHLSRGLATRLTKWLASMLEWN--PRKRGHEGFDRFFAEVDDILN  312 (732)
T ss_pred             ceeEeeecccCCceeeeccCCCcccccHHHHhhhhHHHHHHHhhh--HHHhCCCCcchHHHHHHHHHh
Confidence                             0112222    23345667777788888  77888  66777766666653

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.97  E-value=1e-29  Score=266.79  Aligned_cols=222  Identities=17%  Similarity=0.224  Sum_probs=168.2

Q ss_pred             CccccccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEe
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFE  408 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~E  408 (683)
                      +|... ..+|.|++|.||+|..  +|+.||||.+...    .....+.+|+.++++++||||+++++++.+  ..|+|||
T Consensus         3 ~y~~~-~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   81 (294)
T PLN00009          3 QYEKV-EKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFE   81 (294)
T ss_pred             ceEEE-EEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEe
Confidence            34433 4567899999999997  5789999998622    223568899999999999999999999966  7899999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC-CCcEEEecCCC
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR-NLVAKISGLGL  487 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~-~~~~KL~DFGl  487 (683)
                      |++ ++|.+++...        ....+++..+..++.||+.||.|||+   .+|+|+||+|+||+++. ++.+||+|||+
T Consensus        82 ~~~-~~l~~~~~~~--------~~~~~~~~~~~~~~~qi~~aL~~LH~---~~i~H~dl~p~nill~~~~~~~kl~dfg~  149 (294)
T PLN00009         82 YLD-LDLKKHMDSS--------PDFAKNPRLIKTYLYQILRGIAYCHS---HRVLHRDLKPQNLLIDRRTNALKLADFGL  149 (294)
T ss_pred             ccc-ccHHHHHHhC--------CCCCcCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCcceEEEECCCCEEEEccccc
Confidence            996 5888877422        22346888889999999999999999   67999999999999985 56799999998


Q ss_pred             ccc--------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC-----
Q 005680          488 NIC--------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG-----  536 (683)
Q Consensus       488 a~~--------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~-----  536 (683)
                      +..                          ..++.++|||||||++|+|+||.+||........... .+...-.+     
T Consensus       150 ~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~~~~~~~~-~~~~~~~~~~~~~  228 (294)
T PLN00009        150 ARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSEIDELFK-IFRILGTPNEETW  228 (294)
T ss_pred             ccccCCCccccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHH-HHHHhCCCChhhc
Confidence            742                          1256789999999999999999999964222100000 00000000     


Q ss_pred             -----------CCCC--------CChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          537 -----------NAGI--------WPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       537 -----------~~~~--------~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                                 ....        ..+..++.+.+++.+||..+  |..||++.+++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~--P~~Rps~~~~l~  283 (294)
T PLN00009        229 PGVTSLPDYKSAFPKWPPKDLATVVPTLEPAGVDLLSKMLRLD--PSKRITARAALE  283 (294)
T ss_pred             cccccchhhhhhcccCCCCCHHHhCcCCChHHHHHHHHHccCC--hhhCcCHHHHhc
Confidence                       0000        11245778999999999999  889999999886

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.97  E-value=6.7e-30  Score=264.45  Aligned_cols=210  Identities=24%  Similarity=0.353  Sum_probs=174.1

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcC-CCCccceeccccc--ceeEEEeecCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVR-HPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~-HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      +.+|.|+||.||+|..  +|..||+|++...     .....+..|+.++.+++ ||||+++++++.+  ..++||||+++
T Consensus         7 ~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~   86 (280)
T cd05581           7 KIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFVLEYAPN   86 (280)
T ss_pred             eeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEEEcCCCC
Confidence            4568999999999998  6899999998631     22356888999999998 9999999999865  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      ++|.+++.          ....+++..+..|+.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++..  
T Consensus        87 ~~L~~~l~----------~~~~l~~~~~~~i~~ql~~~l~~Lh~---~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~  153 (280)
T cd05581          87 GELLQYIR----------KYGSLDEKCTRFYAAEILLALEYLHS---KGIIHRDLKPENILLDKDMHIKITDFGTAKVLD  153 (280)
T ss_pred             CcHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHeEECCCCCEEecCCccccccC
Confidence            99999993          44579999999999999999999999   6799999999999999999999999998642  


Q ss_pred             -------------------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhH
Q 005680          491 -------------------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQ  527 (683)
Q Consensus       491 -------------------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~  527 (683)
                                                                 ..++.++||||||++++++++|..||......     
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~-----  228 (280)
T cd05581         154 PNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNEY-----  228 (280)
T ss_pred             CccccccCCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCccHH-----
Confidence                                                       12456899999999999999999999754321     


Q ss_pred             HHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccH----HHHH
Q 005680          528 TTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRI----AGVM  573 (683)
Q Consensus       528 ~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~----~eVl  573 (683)
                      ..+..+. .....+|..+++.+.+++.+||+.+  |..||++    .+++
T Consensus       229 ~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~--p~~R~~~~~~~~~ll  275 (280)
T cd05581         229 LTFQKIL-KLEYSFPPNFPPDAKDLIEKLLVLD--PQDRLGVNEGYDELK  275 (280)
T ss_pred             HHHHHHH-hcCCCCCCccCHHHHHHHHHHhcCC--HhhCCCcccCHHHHh
Confidence            1122222 2333456677889999999999999  7899999    5554

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.97  E-value=9.1e-30  Score=264.44  Aligned_cols=216  Identities=19%  Similarity=0.267  Sum_probs=168.6

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc----ceeEEEeecC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE----LKCIVFEYMP  411 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----~~~LV~Ey~~  411 (683)
                      .+.+|.|+||.||+|..  +|..||+|.+...    .....+.+|+.+++.++||||+++++++.+    ..++||||++
T Consensus         4 ~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~   83 (287)
T cd07840           4 IAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFEYMD   83 (287)
T ss_pred             eEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEecccc
Confidence            35668899999999998  4799999999733    233568899999999999999999999854    5899999997


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                       ++|.+++..         ....+++..++.++.||+.||.|||+   .+++|+||+|+||+++.++.+||+|||++.. 
T Consensus        84 -~~l~~~~~~---------~~~~~~~~~~~~i~~~i~~al~~LH~---~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~  150 (287)
T cd07840          84 -HDLTGLLDS---------PEVKFTESQIKCYMKQLLEGLQYLHS---NGILHRDIKGSNILINNDGVLKLADFGLARPY  150 (287)
T ss_pred             -ccHHHHHhc---------cCCCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCcHHHeEEcCCCCEEEccccceeec
Confidence             588888842         22578999999999999999999999   6799999999999999999999999998642 


Q ss_pred             --------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhc-CC------
Q 005680          491 --------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLD-GN------  537 (683)
Q Consensus       491 --------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild-~~------  537 (683)
                                                ..++.++||||||+++|+|+||++||.........  ..+..... +.      
T Consensus       151 ~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~  228 (287)
T cd07840         151 TKRNSADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTELEQL--EKIFELCGSPTDENWPG  228 (287)
T ss_pred             cCCCcccccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCChHHHH--HHHHHHhCCCchhhccc
Confidence                                      12567899999999999999999998642211000  00000000 00      


Q ss_pred             ------------CCC--------CChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          538 ------------AGI--------WPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       538 ------------~~~--------~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                                  ...        +...++..+.+++.+||..+  |..||++.+++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~--P~~Rp~~~~~l~  283 (287)
T cd07840         229 VSKLPWFENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLD--PKKRISADQALQ  283 (287)
T ss_pred             cccchhhhhccccccchhHHHHHhcccCCHHHHHHHHHHcCCC--hhhCcCHHHHhh
Confidence                        000        00113778999999999999  889999998875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.96  E-value=1.5e-29  Score=268.40  Aligned_cols=214  Identities=22%  Similarity=0.318  Sum_probs=170.7

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC--C---CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG--L---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~--~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      +.+|.|+||.||+|..  ++..||||.+...  .   ....+.+|+.+++.++|||++++++++.+  ..++||||+. |
T Consensus        21 ~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~   99 (308)
T cd06634          21 REIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCL-G   99 (308)
T ss_pred             HheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEEccC-C
Confidence            4568999999999998  6788999998621  1   22467889999999999999999998865  7889999997 6


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++..         ....+++..+..++.|++.||.|||+   .+++||||+|+|||++.++.+||+|||++..   
T Consensus       100 ~l~~~~~~---------~~~~l~~~~~~~~~~~l~~~l~~LH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~  167 (308)
T cd06634         100 SASDLLEV---------HKKPLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP  167 (308)
T ss_pred             CHHHHHHH---------cCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHhEEECCCCcEEECCcccceeecC
Confidence            88877742         23458999999999999999999999   6799999999999999999999999998652   


Q ss_pred             ---------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCC-CChhhHHH
Q 005680          491 ---------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGI-WPLDLAEE  548 (683)
Q Consensus       491 ---------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~-~p~~~~~~  548 (683)
                                           ..++.++|||||||++|+|++|.+||.....     ......+.....+. .+..++..
T Consensus       168 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  242 (308)
T cd06634         168 ANXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA-----MSALYHIAQNESPALQSGHWSEY  242 (308)
T ss_pred             cccccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCccccH-----HHHHHHHhhcCCCCcCcccccHH
Confidence                                 2356789999999999999999999854221     11111222222111 23357788


Q ss_pred             HHHHHHHhhhcCCCccccccHHHHHHHH
Q 005680          549 LAGIALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                      +.+||.+||..+  |..||++.+++...
T Consensus       243 ~~~li~~cl~~~--P~~Rp~~~~ll~~~  268 (308)
T cd06634         243 FRNFVDSCLQKI--PQDRPTSEVLLKHR  268 (308)
T ss_pred             HHHHHHHHhhCC--cccCCCHHHHhhCc
Confidence            999999999999  78999999988653

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.96  E-value=1.2e-29  Score=261.09  Aligned_cols=215  Identities=20%  Similarity=0.292  Sum_probs=171.8

Q ss_pred             cccccCCceEEEEEEEC--CeeEEEEEcCC-------CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          343 RLKCAGDWTNVYRGRLN--HASVAIKTLNN-------GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~--g~~VAvK~l~~-------~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      +.+|+|+||.||++...  +..+++|+++.       ......+..|+.+++.++||||+++++++.+  ..++||||++
T Consensus         6 ~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   85 (260)
T cd08222           6 QRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCIITEYCE   85 (260)
T ss_pred             eeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEEEEeCC
Confidence            56789999999999883  45566666541       1123457789999999999999999999865  7899999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      +++|.+++....      .....+++..+..++.|++.||.|||+   .+++|+||+|+||+++. +.++|+|||++.. 
T Consensus        86 ~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~i~h~~l~~~nili~~-~~~~l~d~g~~~~~  155 (260)
T cd08222          86 GRDLDCKLEELK------HTGKTLSENQVCEWFIQLLLGVHYMHQ---RRILHRDLKAKNIFLKN-NLLKIGDFGVSRLL  155 (260)
T ss_pred             CCCHHHHHHHHh------hcccccCHHHHHHHHHHHHHHHHHHHH---cCccccCCChhheEeec-CCEeecccCceeec
Confidence            999999985431      234679999999999999999999999   77999999999999975 5699999997642 


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhH
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLA  546 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~  546 (683)
                                              ..++.++|+||||+++|+|++|..||.....     ......+.....+..+..++
T Consensus       156 ~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  230 (260)
T cd08222         156 MGSCDLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQNF-----LSVVLRIVEGPTPSLPETYS  230 (260)
T ss_pred             CCCcccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCccH-----HHHHHHHHcCCCCCCcchhc
Confidence                                    1346689999999999999999999863221     12222333444445566788


Q ss_pred             HHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          547 EELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       547 ~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ..+.+++.+||..+  |..||++.+++.
T Consensus       231 ~~~~~li~~~l~~~--p~~Rp~~~~il~  256 (260)
T cd08222         231 RQLNSIMQSMLNKD--PSLRPSAAEILR  256 (260)
T ss_pred             HHHHHHHHHHhcCC--hhhCcCHHHHhh
Confidence            89999999999999  889999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.96  E-value=1.2e-29  Score=269.85  Aligned_cols=213  Identities=20%  Similarity=0.327  Sum_probs=169.1

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCCC-----CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      ..+|.|+||.||+|..  +|..||||.+....     ....+..|+.+++.++|||++++++++.+  ..|+||||+. |
T Consensus        27 ~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~  105 (313)
T cd06633          27 HEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEYCL-G  105 (313)
T ss_pred             eeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEecCC-C
Confidence            4468999999999997  68999999986221     12467889999999999999999999866  6899999996 6


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++..         ...++++..+..++.||+.||.|||+   .+|+|+||+|+||+++.++.+||+|||++..   
T Consensus       106 ~l~~~l~~---------~~~~l~~~~~~~~~~qi~~al~~LH~---~gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~~  173 (313)
T cd06633         106 SASDLLEV---------HKKPLQEVEIAAITHGALQGLAYLHS---HNMIHRDIKAGNILLTEPGQVKLADFGSASKSSP  173 (313)
T ss_pred             CHHHHHHh---------cCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCChhhEEECCCCCEEEeecCCCcccCC
Confidence            78777742         33568999999999999999999999   6799999999999999999999999998642   


Q ss_pred             ---------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCC-CCCChhhHHH
Q 005680          491 ---------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNA-GIWPLDLAEE  548 (683)
Q Consensus       491 ---------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~-~~~p~~~~~~  548 (683)
                                           ..++.++|||||||++|+|++|.+||......     .....+..... ......++..
T Consensus       174 ~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  248 (313)
T cd06633         174 ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM-----SALYHIAQNDSPTLQSNEWTDS  248 (313)
T ss_pred             CCCccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCChH-----HHHHHHHhcCCCCCCccccCHH
Confidence                                 23566899999999999999999998643221     11111111111 1112345677


Q ss_pred             HHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          549 LAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      +.+|+.+||+.+  |..||++.+++..
T Consensus       249 l~~li~~~l~~~--P~~Rp~~~~~l~~  273 (313)
T cd06633         249 FRGFVDYCLQKI--PQERPASAELLRH  273 (313)
T ss_pred             HHHHHHHHccCC--hhhCcCHHHHhcC
Confidence            999999999999  8899999998753

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.96  E-value=9.4e-30  Score=268.37  Aligned_cols=219  Identities=16%  Similarity=0.157  Sum_probs=158.8

Q ss_pred             ccccccccCCceEEEEEEEC-----CeeEEEEEcCCCCCH-------------HHHHHHHHHHHhcCCCCccceeccccc
Q 005680          340 ERFRLKCAGDWTNVYRGRLN-----HASVAIKTLNNGLSE-------------EDFQAKVSFLTAVRHPHLVAVMGCCSE  401 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~~-----g~~VAvK~l~~~~~~-------------~~~~~Ev~iL~~l~HpnIV~l~g~~~~  401 (683)
                      ...+++|+|+||.||+|...     +..+|+|+.......             .....+...+..+.|+||+++++++..
T Consensus        15 ~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~   94 (294)
T PHA02882         15 KIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGCGSF   94 (294)
T ss_pred             EEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEeeeE
Confidence            33467799999999999983     346777765411110             111223344566789999999987643


Q ss_pred             ------ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccccc
Q 005680          402 ------LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD  475 (683)
Q Consensus       402 ------~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld  475 (683)
                            ..+++++++. .++.+.+.          .....++..+..|+.|++.||.|||+   .+|+||||||+|||++
T Consensus        95 ~~~~~~~~~~~~~~~~-~~~~~~~~----------~~~~~~~~~~~~i~~qi~~~l~~lH~---~~iiHrDiKp~Nill~  160 (294)
T PHA02882         95 KRCRMYYRFILLEKLV-ENTKEIFK----------RIKCKNKKLIKNIMKDMLTTLEYIHE---HGISHGDIKPENIMVD  160 (294)
T ss_pred             ecCCceEEEEEEehhc-cCHHHHHH----------hhccCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEc
Confidence                  3467888775 46666662          23346788899999999999999999   6799999999999999


Q ss_pred             CCCcEEEecCCCccc--------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHh
Q 005680          476 RNLVAKISGLGLNIC--------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAM  523 (683)
Q Consensus       476 ~~~~~KL~DFGla~~--------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~  523 (683)
                      .++.++|+|||+|+.                                ..++.++|||||||++|+|++|.+||.......
T Consensus       161 ~~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~  240 (294)
T PHA02882        161 GNNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNG  240 (294)
T ss_pred             CCCcEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccch
Confidence            999999999999742                                236789999999999999999999997542210


Q ss_pred             hh----hHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHH
Q 005680          524 AL----DQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       524 ~~----~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                      ..    ....+..+..+.  ..+..++..+.+++..|+..+  |..||++.++++.|
T Consensus       241 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~rp~~~~l~~~~  293 (294)
T PHA02882        241 NLIHAAKCDFIKRLHEGK--IKIKNANKFIYDFIECVTKLS--YEEKPDYDALIKIF  293 (294)
T ss_pred             HHHHHhHHHHHHHhhhhh--hccCCCCHHHHHHHHHHHhCC--CCCCCCHHHHHHhh
Confidence            00    111112222111  112345788999999999999  77999999998865

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.96  E-value=9.6e-30  Score=274.67  Aligned_cols=234  Identities=19%  Similarity=0.243  Sum_probs=177.7

Q ss_pred             cccCHHHHHHhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceec
Q 005680          324 REYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMG  397 (683)
Q Consensus       324 ~~~s~~ei~~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g  397 (683)
                      +.....++...+++|... +.+|+|+||.||+|..  +|..||||++....    ....+.+|+.++.+++||||+++++
T Consensus         5 ~~~~~~~~~~~~~~y~~~-~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~   83 (345)
T cd07877           5 RQELNKTIWEVPERYQNL-SPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLD   83 (345)
T ss_pred             hhhHHHHHhhccCceEEE-EEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceee
Confidence            344456677788888754 5678999999999987  68999999986321    2356788999999999999999999


Q ss_pred             cccc--------ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCC
Q 005680          398 CCSE--------LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTP  469 (683)
Q Consensus       398 ~~~~--------~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP  469 (683)
                      ++..        ..|++++++ +++|.+++.           ...+++..+..++.||+.||.|||+   .+|+||||||
T Consensus        84 ~~~~~~~~~~~~~~~lv~~~~-~~~L~~~~~-----------~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp  148 (345)
T cd07877          84 VFTPARSLEEFNDVYLVTHLM-GADLNNIVK-----------CQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKP  148 (345)
T ss_pred             eeeecccccccccEEEEehhc-ccCHHHHHh-----------cCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCh
Confidence            8742        367888877 789988873           2358999999999999999999999   6799999999


Q ss_pred             CcccccCCCcEEEecCCCccc-----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh
Q 005680          470 SSILLDRNLVAKISGLGLNIC-----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD  526 (683)
Q Consensus       470 ~NILld~~~~~KL~DFGla~~-----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~  526 (683)
                      +||+++.++.+||+|||++..                       ..++.++|||||||++|+|++|++||..........
T Consensus       149 ~NIll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~  228 (345)
T cd07877         149 SNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLK  228 (345)
T ss_pred             HHEEEcCCCCEEEecccccccccccccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence            999999999999999998743                       235778999999999999999999985321100000


Q ss_pred             ----------HHHH--------HHH---hcCCC----CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          527 ----------QTTL--------MQV---LDGNA----GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       527 ----------~~~~--------~~i---ld~~~----~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                                ....        ...   +....    .......++.+.+++.+||+.|  |..||++.+++..
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--p~~R~t~~e~l~h  300 (345)
T cd07877         229 LILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLD--SDKRITAAQALAH  300 (345)
T ss_pred             HHHHHhCCCCHHHHhhcccHhHHHHHHHhcccCCcchhhhcCCCCHHHHHHHHHHcCCC--hhhcCCHHHHhcC
Confidence                      0000        000   00000    0001134678999999999999  8899999888765

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.96  E-value=1.4e-29  Score=266.60  Aligned_cols=216  Identities=18%  Similarity=0.258  Sum_probs=170.1

Q ss_pred             ccccccCCceEEEEEEEC--CeeEEEEEcCCCC---CHHHHHHHHHHHHhcC-CCCccceeccccc--ceeEEEeecCCC
Q 005680          342 FRLKCAGDWTNVYRGRLN--HASVAIKTLNNGL---SEEDFQAKVSFLTAVR-HPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~--g~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~-HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      ...+|.|+||.||+|.+.  +..||||.+....   ....+..|+.++.+.. ||||++++++|.+  ..|+||||++ +
T Consensus        20 ~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~-~   98 (296)
T cd06618          20 LGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFICMELMS-T   98 (296)
T ss_pred             eeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEEeeccC-c
Confidence            356789999999999994  8999999987322   2345677887777775 9999999999966  7899999985 5


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++..         ....+++..+..++.||+.||.|||+.  .+|+||||+|+||+++.++.+||+|||++..   
T Consensus        99 ~l~~l~~~---------~~~~l~~~~~~~i~~~i~~~l~~lH~~--~~i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~  167 (296)
T cd06618          99 CLDKLLKR---------IQGPIPEDILGKMTVAIVKALHYLKEK--HGVIHRDVKPSNILLDASGNVKLCDFGISGRLVD  167 (296)
T ss_pred             CHHHHHHH---------hcCCCCHHHHHHHHHHHHHHHHHHHhh--CCEecCCCcHHHEEEcCCCCEEECccccchhccC
Confidence            77777632         234799999999999999999999972  3699999999999999999999999998742   


Q ss_pred             -------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCC--h
Q 005680          491 -------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWP--L  543 (683)
Q Consensus       491 -------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p--~  543 (683)
                                               ..++.++||||||+++|+|++|+.||.....    ....+..++......++  .
T Consensus       168 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~----~~~~~~~~~~~~~~~~~~~~  243 (296)
T cd06618         168 SKAKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKT----EFEVLTKILQEEPPSLPPNE  243 (296)
T ss_pred             CCcccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcchh----HHHHHHHHhcCCCCCCCCCC
Confidence                                     1156789999999999999999999864221    11223333333322222  2


Q ss_pred             hhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          544 DLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       544 ~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .++.++.+|+.+||..|  |..||++.+++..
T Consensus       244 ~~~~~l~~li~~~l~~~--p~~Rp~~~~il~~  273 (296)
T cd06618         244 GFSPDFCSFVDLCLTKD--HRKRPKYRELLQH  273 (296)
T ss_pred             CCCHHHHHHHHHHccCC--hhhCCCHHHHhcC
Confidence            46788999999999999  8899999999865

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.96  E-value=1.4e-29  Score=263.38  Aligned_cols=218  Identities=23%  Similarity=0.261  Sum_probs=167.5

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCCC---CHHHHHHHHHHHHhcC-CCCccceeccccc--ceeEEEeecCCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNGL---SEEDFQAKVSFLTAVR-HPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~-HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      +.+|.|+||.||+|..  ++..||||.+....   ......+|+..+.+++ ||||+++++++.+  ..++||||+ +|+
T Consensus         5 ~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~   83 (283)
T cd07830           5 KQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYM-EGN   83 (283)
T ss_pred             eeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecC-CCC
Confidence            4578999999999998  57899999987322   2234567999999999 9999999999866  789999999 789


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++...        ....+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++..    
T Consensus        84 l~~~~~~~--------~~~~~~~~~~~~~~~~l~~~l~~Lh~---~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~  152 (283)
T cd07830          84 LYQLMKDR--------KGKPFSESVIRSIIYQILQGLAHIHK---HGFFHRDLKPENLLVSGPEVVKIADFGLAREIRSR  152 (283)
T ss_pred             HHHHHHhc--------ccccCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChhhEEEcCCCCEEEeecccceeccCC
Confidence            99988432        23478999999999999999999999   6799999999999999999999999998742    


Q ss_pred             ---------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh----------H------HHHHHH
Q 005680          491 ---------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD----------Q------TTLMQV  533 (683)
Q Consensus       491 ---------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~----------~------~~~~~i  533 (683)
                                           ..++.++|+||||+++|+|++|++||..........          .      ..+...
T Consensus       153 ~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (283)
T cd07830         153 PPYTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLASK  232 (283)
T ss_pred             CCcCCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCChHHHHHHHHHhcCCCChhhhhhHhhhhcc
Confidence                                 124678999999999999999999985422110000          0      000000


Q ss_pred             hcCC----C----CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          534 LDGN----A----GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       534 ld~~----~----~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ....    .    ....+..+..+.+++.+||+.+  |..|||+.+++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~--p~~Rpt~~ei~~  279 (283)
T cd07830         233 LGFRFPQFAPTSLHQLIPNASPEAIDLIKDMLRWD--PKKRPTASQALQ  279 (283)
T ss_pred             ccccccccccccHHHHcccCCHHHHHHHHHhcccC--cccCCCHHHHhh
Confidence            0000    0    0001122578999999999999  889999998865

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.96  E-value=7.7e-30  Score=273.69  Aligned_cols=227  Identities=19%  Similarity=0.257  Sum_probs=173.2

Q ss_pred             HHHhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCC----CCCHHHHHHHHHHHHhcCCCCccceeccccc---
Q 005680          331 IRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE---  401 (683)
Q Consensus       331 i~~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~---  401 (683)
                      +...+++|... +.+|.|+||.||++..  +|..||||++..    ......+..|+.++..++||||++++++|..   
T Consensus         5 ~~~~~~~y~~~-~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~   83 (328)
T cd07856           5 VFEITNRYVDL-QPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLE   83 (328)
T ss_pred             eeccccceEEE-EeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCC
Confidence            34566676554 6778999999999987  688999998752    2234678899999999999999999998843   


Q ss_pred             ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEE
Q 005680          402 LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAK  481 (683)
Q Consensus       402 ~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~K  481 (683)
                      ..++||||+ +++|.+++.           ...+++..+..++.||+.||.|||+   .+|+||||+|+|||++.++.+|
T Consensus        84 ~~~lv~e~~-~~~L~~~~~-----------~~~~~~~~~~~~~~ql~~aL~~LH~---~~iiH~dl~p~Nili~~~~~~~  148 (328)
T cd07856          84 DIYFVTELL-GTDLHRLLT-----------SRPLEKQFIQYFLYQILRGLKYVHS---AGVVHRDLKPSNILINENCDLK  148 (328)
T ss_pred             cEEEEeehh-ccCHHHHHh-----------cCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEeECCCCCEE
Confidence            688999998 578988872           2357888889999999999999999   6799999999999999999999


Q ss_pred             EecCCCccc-----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhh----------hHH
Q 005680          482 ISGLGLNIC-----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMAL----------DQT  528 (683)
Q Consensus       482 L~DFGla~~-----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~----------~~~  528 (683)
                      |+|||++..                       ..++.++|||||||++|+|+||++||.........          ...
T Consensus       149 l~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~  228 (328)
T cd07856         149 ICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDD  228 (328)
T ss_pred             eCccccccccCCCcCCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHH
Confidence            999998742                       23577899999999999999999998532210000          000


Q ss_pred             --------HHHHHhcC--CCCCCC-----hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          529 --------TLMQVLDG--NAGIWP-----LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       529 --------~~~~ild~--~~~~~p-----~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                              ....+...  .....|     +.++..+.++|.+||+.+  |..|||+.+++..
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--P~~R~t~~ell~~  288 (328)
T cd07856         229 VINTICSENTLRFVQSLPKREPVPFSEKFKNADPSAIDLLEKMLVFD--PQKRISAAEALAH  288 (328)
T ss_pred             HHHhccchhhHHHHhhccccCCCcHHHHcCCCCHHHHHHHHHHcCCC--hhhCCCHHHHhcC
Confidence                    00001000  001111     235688999999999999  8899998887543

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=2.2e-30  Score=264.59  Aligned_cols=211  Identities=25%  Similarity=0.307  Sum_probs=181.2

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC-----CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV  406 (683)
                      ++|. -++++|+|.||+|.+++-  +|+.+|||+++...     ....-..|-++|...+||.+..+-..|+.  .+|+|
T Consensus       168 ~dFd-fLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCFV  246 (516)
T KOG0690|consen  168 EDFD-FLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCFV  246 (516)
T ss_pred             chhh-HHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEEE
Confidence            4453 458999999999999987  79999999998432     23456678999999999999999888865  88999


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      |||..||.|.-+|          .....+++.....+-.+|+.||.|||+   ++||.||||.+|.|||.+|++||+|||
T Consensus       247 MeyanGGeLf~HL----------srer~FsE~RtRFYGaEIvsAL~YLHs---~~ivYRDlKLENLlLDkDGHIKitDFG  313 (516)
T KOG0690|consen  247 MEYANGGELFFHL----------SRERVFSEDRTRFYGAEIVSALGYLHS---RNIVYRDLKLENLLLDKDGHIKITDFG  313 (516)
T ss_pred             EEEccCceEeeeh----------hhhhcccchhhhhhhHHHHHHhhhhhh---CCeeeeechhhhheeccCCceEeeecc
Confidence            9999999999999          566789999999999999999999999   779999999999999999999999999


Q ss_pred             Cccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCC
Q 005680          487 LNIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIW  541 (683)
Q Consensus       487 la~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~  541 (683)
                      +|+.                         ..|+.++|+|.+||++|||++|+.||..      .+...+..++--....+
T Consensus       314 LCKE~I~~g~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn------~dh~kLFeLIl~ed~kF  387 (516)
T KOG0690|consen  314 LCKEEIKYGDTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYN------KDHEKLFELILMEDLKF  387 (516)
T ss_pred             cchhcccccceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccc------cchhHHHHHHHhhhccC
Confidence            9964                         3588999999999999999999999975      33344445554455678


Q ss_pred             ChhhHHHHHHHHHHhhhcCCCcccccc
Q 005680          542 PLDLAEELAGIALKCLSADQDANRDLR  568 (683)
Q Consensus       542 p~~~~~~l~~Li~~CL~~dP~p~~RPs  568 (683)
                      |..++++...|+..+|.+|  |.+|..
T Consensus       388 Pr~ls~eAktLLsGLL~kd--P~kRLG  412 (516)
T KOG0690|consen  388 PRTLSPEAKTLLSGLLKKD--PKKRLG  412 (516)
T ss_pred             CccCCHHHHHHHHHHhhcC--hHhhcC
Confidence            8899999999999999999  778864

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=9.1e-30  Score=277.38  Aligned_cols=166  Identities=20%  Similarity=0.255  Sum_probs=148.4

Q ss_pred             ccccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeec
Q 005680          340 ERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYM  410 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~  410 (683)
                      ...+-||-|+||.|-++.-  +...+|+|.|+.     ......+..|-.||...++++||+||..|.|  .+|+||+|+
T Consensus       632 vkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFVMdYI  711 (1034)
T KOG0608|consen  632 VKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMDYI  711 (1034)
T ss_pred             EEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEEEecc
Confidence            4456778999999999875  567899999972     2234568889999999999999999999987  899999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~  490 (683)
                      +||++..+|          .+-+.+.+..+..|+.++..|+.+.|.   .|+|||||||+|||||.+|++||+|||||..
T Consensus       712 PGGDmMSLL----------IrmgIFeE~LARFYIAEltcAiesVHk---mGFIHRDiKPDNILIDrdGHIKLTDFGLCTG  778 (1034)
T KOG0608|consen  712 PGGDMMSLL----------IRMGIFEEDLARFYIAELTCAIESVHK---MGFIHRDIKPDNILIDRDGHIKLTDFGLCTG  778 (1034)
T ss_pred             CCccHHHHH----------HHhccCHHHHHHHHHHHHHHHHHHHHh---ccceecccCccceEEccCCceeeeecccccc
Confidence            999999999          566889999999999999999999999   7899999999999999999999999999853


Q ss_pred             -------------------------------------------------------------------cCCCcccccccHH
Q 005680          491 -------------------------------------------------------------------DQLNVRSDIRAFG  503 (683)
Q Consensus       491 -------------------------------------------------------------------~~~t~ksDVwSlG  503 (683)
                                                                                         ..|+..+|+||.|
T Consensus       779 fRWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws~g  858 (1034)
T KOG0608|consen  779 FRWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVG  858 (1034)
T ss_pred             ceeccccccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhHhh
Confidence                                                                               2477889999999


Q ss_pred             HHHHHHhhCCCCchh
Q 005680          504 TLLLHLLTGRNWAGL  518 (683)
Q Consensus       504 viL~eLltG~~Pf~~  518 (683)
                      ||||||+.|++||-.
T Consensus       859 vil~em~~g~~pf~~  873 (1034)
T KOG0608|consen  859 VILYEMLVGQPPFLA  873 (1034)
T ss_pred             HHHHHHhhCCCCccC
Confidence            999999999999953

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.96  E-value=1.3e-29  Score=272.00  Aligned_cols=222  Identities=19%  Similarity=0.292  Sum_probs=169.9

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCC----CCCHHHHHHHHHHHHhc-CCCCccceeccccc----cee
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN----GLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE----LKC  404 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~----~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~----~~~  404 (683)
                      ++|... +.+|.|+||.||+|.+  +|..||||++..    ......+.+|+.+++++ +||||++++++|..    ..|
T Consensus         7 ~~y~~~-~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~~   85 (337)
T cd07852           7 RKYEIL-QKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDIY   85 (337)
T ss_pred             hHHHHh-HhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceEE
Confidence            344433 5668999999999998  578999998852    22235677899999999 99999999998743    579


Q ss_pred             EEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEec
Q 005680          405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISG  484 (683)
Q Consensus       405 LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~D  484 (683)
                      +||||++ ++|..++.          .. .+++..+..++.||+.||.|||+   .+|+||||||+||+++.++.+||+|
T Consensus        86 lv~e~~~-~~L~~~~~----------~~-~~~~~~~~~i~~qi~~~L~~LH~---~~i~H~dl~p~nill~~~~~~kl~d  150 (337)
T cd07852          86 LVFEYME-TDLHAVIR----------AN-ILEDVHKRYIMYQLLKALKYIHS---GNVIHRDLKPSNILLNSDCRVKLAD  150 (337)
T ss_pred             EEecccc-cCHHHHHh----------cC-CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCcEEEee
Confidence            9999997 59988882          22 78899999999999999999999   6799999999999999999999999


Q ss_pred             CCCccc-------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhh--------
Q 005680          485 LGLNIC-------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMAL--------  525 (683)
Q Consensus       485 FGla~~-------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~--------  525 (683)
                      ||++..                               ..++.++|||||||++|+|+||++||.........        
T Consensus       151 ~g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~~~~~~~~~~~~~  230 (337)
T cd07852         151 FGLARSLSELEENPENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIG  230 (337)
T ss_pred             ccchhccccccccccCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhC
Confidence            998742                               12456899999999999999999998532110000        


Q ss_pred             ----------hHHHHHHHhcC----C---CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          526 ----------DQTTLMQVLDG----N---AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       526 ----------~~~~~~~ild~----~---~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                                .......+++.    .   .....+.++..+.+++.+||+.|  |..|||+.+++..
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~--P~~Rps~~~il~~  295 (337)
T cd07852         231 PPSAEDIESIKSPFAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFN--PNKRLTAEEALEH  295 (337)
T ss_pred             CCCHHHHHHHHhhhHHHhhhhcccccccchhhhccCCCHHHHHHHHHhccCC--cccccCHHHHhhC
Confidence                      00000111110    0   01111235788999999999999  8899999999874

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.96  E-value=3.2e-30  Score=283.12  Aligned_cols=218  Identities=20%  Similarity=0.288  Sum_probs=179.8

Q ss_pred             CccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEe
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFE  408 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~E  408 (683)
                      ++....+.+|+|.|++|..|+.  +|..||||.+....    ....+.+|+.+|..|+|||||+++.+...  .+|+|||
T Consensus        56 g~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lylV~e  135 (596)
T KOG0586|consen   56 GLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYLVME  135 (596)
T ss_pred             cceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEEEEE
Confidence            3445557778999999999998  79999999998332    23458899999999999999999999864  8999999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCc
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN  488 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla  488 (683)
                      |+.+|.+.++|.          ....+....+..++.|+++|++|||+   +.|||||||++||||+.+.++||+|||++
T Consensus       136 ya~~ge~~~yl~----------~~gr~~e~~ar~~F~q~vsaveYcH~---k~ivHrdLk~eNilL~~~mnikIaDfgfS  202 (596)
T KOG0586|consen  136 YASGGELFDYLV----------KHGRMKEKEARAKFRQIVSAVEYCHS---KNIVHRDLKAENILLDENMNIKIADFGFS  202 (596)
T ss_pred             eccCchhHHHHH----------hcccchhhhhhhhhHHHHHHHHHHhh---cceeccccchhhcccccccceeeeccccc
Confidence            999999999994          45567778899999999999999999   77999999999999999999999999998


Q ss_pred             cc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCCh
Q 005680          489 IC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPL  543 (683)
Q Consensus       489 ~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~  543 (683)
                      ..                         ...++.+|+||+|++||-|+.|..||+...-.      .+..-+-......|.
T Consensus       203 ~~~~~~~~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~lk------~Lr~rvl~gk~rIp~  276 (596)
T KOG0586|consen  203 TFFDYGLMLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNLK------ELRPRVLRGKYRIPF  276 (596)
T ss_pred             eeecccccccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCcccc------cccchheeeeecccc
Confidence            54                         23578999999999999999999999752210      011111112234455


Q ss_pred             hhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          544 DLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       544 ~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .++.+..+|+.++|..+  |++|++++++.+.
T Consensus       277 ~ms~dce~lLrk~lvl~--Pskr~~~dqim~~  306 (596)
T KOG0586|consen  277 YMSCDCEDLLRKFLVLN--PSKRGPCDQIMKD  306 (596)
T ss_pred             eeechhHHHHHHhhccC--ccccCCHHHhhhh
Confidence            67889999999999999  8899999988754

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=4e-30  Score=278.06  Aligned_cols=222  Identities=17%  Similarity=0.271  Sum_probs=176.2

Q ss_pred             HhhcCccccccccccCCceEEEEEEE-CCeeEEEEEcC----CCCCHHHHHHHHHHHHhc-CCCCccceeccccc--cee
Q 005680          333 LATEDFSERFRLKCAGDWTNVYRGRL-NHASVAIKTLN----NGLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKC  404 (683)
Q Consensus       333 ~at~~F~~~~~liG~G~fG~Vykg~~-~g~~VAvK~l~----~~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~  404 (683)
                      ...+.-++..+.+|.||.+.||++.. +.+.||+|++.    +......|..|+..|.+| .|.+||+||+|-..  .+|
T Consensus       357 ~Vkg~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lY  436 (677)
T KOG0596|consen  357 KVKGREYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLY  436 (677)
T ss_pred             EECcchhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEE
Confidence            33444456677889999999999998 55788888876    334457899999999999 59999999998743  889


Q ss_pred             EEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEec
Q 005680          405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISG  484 (683)
Q Consensus       405 LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~D  484 (683)
                      |||||-+ .+|..+|...        ......| .+..|..|++.|+.++|.   .||||.||||.|+|+ -.|.+||+|
T Consensus       437 mvmE~Gd-~DL~kiL~k~--------~~~~~~~-~lk~ywkqML~aV~~IH~---~gIVHSDLKPANFLl-VkG~LKLID  502 (677)
T KOG0596|consen  437 MVMECGD-IDLNKILKKK--------KSIDPDW-FLKFYWKQMLLAVKTIHQ---HGIVHSDLKPANFLL-VKGRLKLID  502 (677)
T ss_pred             EEeeccc-ccHHHHHHhc--------cCCCchH-HHHHHHHHHHHHHHHHHH---hceeecCCCcccEEE-EeeeEEeee
Confidence            9999985 7999999643        2222334 778899999999999999   559999999999998 468999999


Q ss_pred             CCCccc--------------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh
Q 005680          485 LGLNIC--------------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD  526 (683)
Q Consensus       485 FGla~~--------------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~  526 (683)
                      ||+|..                                      -..+.+|||||||||||+|+.|++||+.....    
T Consensus       503 FGIA~aI~~DTTsI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n~----  578 (677)
T KOG0596|consen  503 FGIANAIQPDTTSIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQIINQ----  578 (677)
T ss_pred             echhcccCccccceeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHHHH----
Confidence            999853                                      12578999999999999999999999875432    


Q ss_pred             HHHHHHHhcC-CCCCCChhhH-HHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          527 QTTLMQVLDG-NAGIWPLDLA-EELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       527 ~~~~~~ild~-~~~~~p~~~~-~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ...+..+.++ ...++|..-+ .++.+++..||..|  |.+|||+.++|.
T Consensus       579 ~aKl~aI~~P~~~Iefp~~~~~~~li~~mK~CL~rd--PkkR~si~eLLq  626 (677)
T KOG0596|consen  579 IAKLHAITDPNHEIEFPDIPENDELIDVMKCCLARD--PKKRWSIPELLQ  626 (677)
T ss_pred             HHHHHhhcCCCccccccCCCCchHHHHHHHHHHhcC--cccCCCcHHHhc
Confidence            3456677776 3334443222 23999999999999  779999999875

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.96  E-value=1.7e-29  Score=262.76  Aligned_cols=217  Identities=21%  Similarity=0.287  Sum_probs=165.9

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhc---CCCCccceeccccc--c-----eeEE
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAV---RHPHLVAVMGCCSE--L-----KCIV  406 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l---~HpnIV~l~g~~~~--~-----~~LV  406 (683)
                      +++|.|+||.||+|..  ++..||||++....    ....+.+|+.++.++   .||||+++++++.+  .     .+++
T Consensus         5 ~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~l~   84 (287)
T cd07838           5 AEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELKLTLV   84 (287)
T ss_pred             EEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCceeEEE
Confidence            5668999999999998  47999999997221    124566788877766   59999999999864  3     7899


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      |||++ ++|.+++...        ....+++..+..++.||+.||.|||+   .+++|+||+|+||+++.++.+||+|||
T Consensus        85 ~e~~~-~~l~~~l~~~--------~~~~l~~~~~~~~~~~i~~al~~LH~---~~i~h~~l~~~nili~~~~~~~l~dfg  152 (287)
T cd07838          85 FEHVD-QDLATYLSKC--------PKPGLPPETIKDLMRQLLRGVDFLHS---HRIVHRDLKPQNILVTSDGQVKIADFG  152 (287)
T ss_pred             ehhcc-cCHHHHHHHc--------cCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCChhhEEEccCCCEEEeccC
Confidence            99997 5898888432        22368999999999999999999999   679999999999999999999999999


Q ss_pred             Cccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHh--------
Q 005680          487 LNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVL--------  534 (683)
Q Consensus       487 la~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~il--------  534 (683)
                      ++..                        ..++.++|||||||++|+|++|.+||......... ...+....        
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  231 (287)
T cd07838         153 LARIYSFEMALTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSEADQL-DKIFDVIGLPSEEEWP  231 (287)
T ss_pred             cceeccCCcccccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCChHHHH-HHHHHHcCCCChHhcC
Confidence            8743                        23467899999999999999999998643221000 00000000        


Q ss_pred             ----------cCCC----CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          535 ----------DGNA----GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       535 ----------d~~~----~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                                ....    ....+..+..+.+++.+||+.|  |..||++.+++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~d--p~~Rp~~~~il~  283 (287)
T cd07838         232 RNVSLPRSSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFN--PHKRISAFEALQ  283 (287)
T ss_pred             CCcccchhhcccccccchhhhhhhhhHHHHHHHHHHhccC--CccCCCHHHHhc
Confidence                      0000    0011245678899999999999  789999998874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.96  E-value=1.7e-30  Score=260.66  Aligned_cols=215  Identities=18%  Similarity=0.261  Sum_probs=175.4

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCCCCH---HHHHHHHHHHHhcC-CCCccceeccccc--ceeEEEeecCCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSE---EDFQAKVSFLTAVR-HPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~---~~~~~Ev~iL~~l~-HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      ..+|.|+-|.|+++++  +|..+|||.+....+.   ++++..+.++.... +|+||+.+|+|..  ..+|.||.|. ..
T Consensus        98 ~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMelMs-~C  176 (391)
T KOG0983|consen   98 GDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICMELMS-TC  176 (391)
T ss_pred             HhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHHHHH-HH
Confidence            3568999999999998  5799999999844433   56777887777664 8999999999955  6788899984 55


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      ++.+|.         .-..++++..+-++...+++||.||...  .+|||||+||+|||+|..|++||||||++..    
T Consensus       177 ~ekLlk---------rik~piPE~ilGk~tva~v~AL~YLKeK--H~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdS  245 (391)
T KOG0983|consen  177 AEKLLK---------RIKGPIPERILGKMTVAIVKALYYLKEK--HGVIHRDVKPSNILLDERGNIKLCDFGISGRLVDS  245 (391)
T ss_pred             HHHHHH---------HhcCCchHHhhhhhHHHHHHHHHHHHHh--cceeecccCccceEEccCCCEEeecccccceeecc
Confidence            666664         2345699999999999999999999873  5799999999999999999999999999743    


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCCh--hh
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPL--DL  545 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~--~~  545 (683)
                                             ..|+.++|||||||+|+||.||..||....    .+-..+..+++...+..|.  ..
T Consensus       246 kAhtrsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~----tdFe~ltkvln~ePP~L~~~~gF  321 (391)
T KOG0983|consen  246 KAHTRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCK----TDFEVLTKVLNEEPPLLPGHMGF  321 (391)
T ss_pred             cccccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCC----ccHHHHHHHHhcCCCCCCcccCc
Confidence                                   357889999999999999999999997632    3345566666654444443  37


Q ss_pred             HHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          546 AEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       546 ~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ++.+.+++..||.+|  ++.||...++++.
T Consensus       322 Sp~F~~fv~~CL~kd--~r~RP~Y~~Ll~h  349 (391)
T KOG0983|consen  322 SPDFQSFVKDCLTKD--HRKRPKYNKLLEH  349 (391)
T ss_pred             CHHHHHHHHHHhhcC--cccCcchHHHhcC
Confidence            899999999999999  9999998888754

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.96  E-value=2.5e-31  Score=265.83  Aligned_cols=232  Identities=18%  Similarity=0.193  Sum_probs=180.8

Q ss_pred             cccccCHHHHHHhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC---CCHHHHHHHHHHHHhc-CCCCccce
Q 005680          322 AFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG---LSEEDFQAKVSFLTAV-RHPHLVAV  395 (683)
Q Consensus       322 ~~~~~s~~ei~~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~---~~~~~~~~Ev~iL~~l-~HpnIV~l  395 (683)
                      ..+.|+-++|+.        +..+|.|+||+|+|-.+  .|+..|||+++..   ..+.+++.|.+...+- +.||||++
T Consensus        57 ~~~~F~~~~Lqd--------lg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkf  128 (361)
T KOG1006|consen   57 HLHTFTSDNLQD--------LGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKF  128 (361)
T ss_pred             cccccccchHHH--------HHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHH
Confidence            455666666533        34678999999999988  6899999999833   3456788898776555 78999999


Q ss_pred             eccccc--ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccc
Q 005680          396 MGCCSE--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSIL  473 (683)
Q Consensus       396 ~g~~~~--~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NIL  473 (683)
                      ||++..  ..||-||+|. .||..+......     .....+++...-.|..-++.||.||-..  ..|||||+||+|||
T Consensus       129 yGa~F~EGdcWiCMELMd-~SlDklYk~vy~-----vq~~~ipE~Ilg~ItvatV~AL~yLK~~--lkiIHRDvKPSNIL  200 (361)
T KOG1006|consen  129 YGALFSEGDCWICMELMD-ISLDKLYKRVYS-----VQKSRIPENILGHITVATVDALDYLKEE--LKIIHRDVKPSNIL  200 (361)
T ss_pred             hhhhhcCCceeeeHHHHh-hhHHHHHHHHHH-----HHhccCcHhhhhheeeeehhHHHHHHHH--hhhhhccCChhheE
Confidence            999854  7899999996 787766532211     3456799999999999999999999874  56999999999999


Q ss_pred             ccCCCcEEEecCCCccc--------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhH
Q 005680          474 LDRNLVAKISGLGLNIC--------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQ  527 (683)
Q Consensus       474 ld~~~~~KL~DFGla~~--------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~  527 (683)
                      ||..|.+||||||++..                          ..|+.+|||||||++|||+.||+.|+..-..    .-
T Consensus       201 ldr~G~vKLCDFGIcGqLv~SiAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~s----vf  276 (361)
T KOG1006|consen  201 LDRHGDVKLCDFGICGQLVDSIAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWDS----VF  276 (361)
T ss_pred             EecCCCEeeecccchHhHHHHHHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHHH----HH
Confidence            99999999999999743                          3488999999999999999999999864222    12


Q ss_pred             HHHHHHhcC--CCCCCCh---hhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          528 TTLMQVLDG--NAGIWPL---DLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       528 ~~~~~ild~--~~~~~p~---~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ..+..++.+  .....+.   ..+..+..+|..||.+|  .+.||...++.+.
T Consensus       277 eql~~Vv~gdpp~l~~~~~~~~~s~~~~~fintCl~Kd--~~~Rpky~~Lk~~  327 (361)
T KOG1006|consen  277 EQLCQVVIGDPPILLFDKECVHYSFSMVRFINTCLIKD--RSDRPKYDDLKKF  327 (361)
T ss_pred             HHHHHHHcCCCCeecCcccccccCHHHHHHHHHHhhcc--cccCcchhhhhcC
Confidence            233344433  2222333   37889999999999999  8899998887653

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.96  E-value=1.4e-29  Score=273.02  Aligned_cols=234  Identities=18%  Similarity=0.279  Sum_probs=174.1

Q ss_pred             CHHHHHHhh----cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCcccee
Q 005680          327 AAEDIRLAT----EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVM  396 (683)
Q Consensus       327 s~~ei~~at----~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~  396 (683)
                      +..|+..++    ++|.. ...+|.|+||.||+|..  +|..||||++...    .....+.+|+.+++.++||||++++
T Consensus         2 ~~~~~~~~~~~~~~~y~~-~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~   80 (342)
T cd07879           2 YREEVNKTVWELPERYTS-LKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLL   80 (342)
T ss_pred             chhhhhhhhhccccceEE-EEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchh
Confidence            344555554    55544 46778999999999997  6899999998632    1235678999999999999999999


Q ss_pred             ccccc--------ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCC
Q 005680          397 GCCSE--------LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLT  468 (683)
Q Consensus       397 g~~~~--------~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLK  468 (683)
                      +++..        ..++|+||+. ++|..++            ...+++..+..++.|++.||.|||+   .+|+|||||
T Consensus        81 ~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~------------~~~~~~~~~~~~~~qi~~aL~~LH~---~~i~H~dlk  144 (342)
T cd07879          81 DVFTSAVSGDEFQDFYLVMPYMQ-TDLQKIM------------GHPLSEDKVQYLVYQMLCGLKYIHS---AGIIHRDLK  144 (342)
T ss_pred             heecccccCCCCceEEEEecccc-cCHHHHH------------cCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCC
Confidence            98753        3589999996 4666554            1358899999999999999999999   679999999


Q ss_pred             CCcccccCCCcEEEecCCCccc-----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhh
Q 005680          469 PSSILLDRNLVAKISGLGLNIC-----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMAL  525 (683)
Q Consensus       469 P~NILld~~~~~KL~DFGla~~-----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~  525 (683)
                      |+|||++.++.+||+|||+++.                       ..++.++|||||||++|+|++|+.||.........
T Consensus       145 p~NIll~~~~~~kL~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~~~~~  224 (342)
T cd07879         145 PGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQL  224 (342)
T ss_pred             HHHEEECCCCCEEEeeCCCCcCCCCCCCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence            9999999999999999998743                       13567899999999999999999999642211000


Q ss_pred             hH---------HHHH---------HHhcCC----CCC---CChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH--HHH
Q 005680          526 DQ---------TTLM---------QVLDGN----AGI---WPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE--LDE  578 (683)
Q Consensus       526 ~~---------~~~~---------~ild~~----~~~---~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~--L~~  578 (683)
                      ..         ..+.         ......    ...   ..+..+..+.+|+.+||+.|  |.+||++.+++..  ++.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~d--P~~R~~~~e~l~h~~f~~  302 (342)
T cd07879         225 TQILKVTGVPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELD--VDKRLTATEALEHPYFDS  302 (342)
T ss_pred             HHHHHhcCCCCHHHHHHhcccchHHHHhhcCCcccchHHHHhcCCCHHHHHHHHHHcCCC--hhhCcCHHHHhcCcchhh
Confidence            00         0000         000000    000   01134577899999999999  8899999999854  444


Q ss_pred             H
Q 005680          579 V  579 (683)
Q Consensus       579 l  579 (683)
                      +
T Consensus       303 ~  303 (342)
T cd07879         303 F  303 (342)
T ss_pred             c
Confidence            4

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.96  E-value=2.5e-29  Score=260.92  Aligned_cols=217  Identities=19%  Similarity=0.255  Sum_probs=169.6

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      +.+|.|++|.||+|..  +|..||+|.+....    ....+..|+.++++++||||+++++++.+  ..++||||++ ++
T Consensus         5 ~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~-~~   83 (283)
T cd05118           5 GKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFMD-TD   83 (283)
T ss_pred             eeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEeccC-CC
Confidence            4568899999999998  68899999987322    24678899999999999999999999865  7899999997 48


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++..         ....+++..+..++.||+.||.|||+   .+|+|+||||+||+++.++.++|+|||.+..    
T Consensus        84 l~~~l~~---------~~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~  151 (283)
T cd05118          84 LYKLIKD---------RQRGLPESLIKSYLYQLLQGLAFCHS---HGILHRDLKPENLLINTEGVLKLADFGLARSFGSP  151 (283)
T ss_pred             HHHHHHh---------hcccCCHHHHHHHHHHHHHHHHHHHH---CCeeecCcCHHHEEECCCCcEEEeeeeeeEecCCC
Confidence            8888842         23578999999999999999999999   6799999999999999999999999997632    


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhH----------HHHHHHhc---
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQ----------TTLMQVLD---  535 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~----------~~~~~ild---  535 (683)
                                            ..++.++||||||+++|+|+||++||...........          ........   
T Consensus       152 ~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (283)
T cd05118         152 VRPYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSLAR  231 (283)
T ss_pred             cccccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCchHhcccchhhhh
Confidence                                  1467789999999999999999999854222100000          00000000   


Q ss_pred             --------CC---CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          536 --------GN---AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       536 --------~~---~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                              ..   .....+.++..+.++|.+||+.|  |..||++.+++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~--P~~Rp~~~~ll~  279 (283)
T cd05118         232 NYKFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYD--PHKRITAEQALA  279 (283)
T ss_pred             hhhhhhccccccCHHHhhhhhCHHHHHHHHHHhccC--cccCcCHHHHhh
Confidence                    00   00112246788999999999999  889999999875

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.96  E-value=1.2e-29  Score=258.89  Aligned_cols=196  Identities=17%  Similarity=0.162  Sum_probs=159.8

Q ss_pred             CCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCchhhhhhcc
Q 005680          348 GDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRDKLFTSQ  423 (683)
Q Consensus       348 G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~~L~~~~  423 (683)
                      |.||.||++.+  +|+.||+|.+....   .+..|...+....||||+++++++.+  ..++||||++||+|.+++.   
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~---   77 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSS---EYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHIS---   77 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchh---hhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHH---
Confidence            78999999998  68999999997432   33455556666789999999999865  7899999999999999984   


Q ss_pred             cccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-------------
Q 005680          424 RNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-------------  490 (683)
Q Consensus       424 ~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-------------  490 (683)
                             ....+++..+..++.|++.||.|||+   ++|+||||||+||+++.++.++|+|||++..             
T Consensus        78 -------~~~~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~  147 (237)
T cd05576          78 -------KFLNIPEECVKRWAAEMVVALDALHR---EGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSCDGEAVENM  147 (237)
T ss_pred             -------HhcCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHEEEcCCCCEEEecccchhccccccccCCcCcc
Confidence                   33468999999999999999999999   7799999999999999999999999997531             


Q ss_pred             ---------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCC
Q 005680          491 ---------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQ  561 (683)
Q Consensus       491 ---------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP  561 (683)
                               ..++.++||||||+++|+|++|++|+......          +........|..+++.+.+++.+||+.| 
T Consensus       148 y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~li~~~l~~d-  216 (237)
T cd05576         148 YCAPEVGGISEETEACDWWSLGAILFELLTGKTLVECHPSG----------INTHTTLNIPEWVSEEARSLLQQLLQFN-  216 (237)
T ss_pred             ccCCcccCCCCCCchhhHHHHHHHHHHHHHCcchhhcCchh----------cccccccCCcccCCHHHHHHHHHHccCC-
Confidence                     24677899999999999999999887532110          0111122345567889999999999999 


Q ss_pred             CccccccHHH
Q 005680          562 DANRDLRIAG  571 (683)
Q Consensus       562 ~p~~RPs~~e  571 (683)
                       |..||++.+
T Consensus       217 -p~~R~~~~~  225 (237)
T cd05576         217 -PTERLGAGV  225 (237)
T ss_pred             -HHHhcCCCc
Confidence             779999643

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.96  E-value=5.8e-30  Score=271.26  Aligned_cols=228  Identities=21%  Similarity=0.293  Sum_probs=190.2

Q ss_pred             cCHHHHHHhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcC-----CCCCHHHHHHHHHHHHhcCCCCccceecc
Q 005680          326 YAAEDIRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN-----NGLSEEDFQAKVSFLTAVRHPHLVAVMGC  398 (683)
Q Consensus       326 ~s~~ei~~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~-----~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~  398 (683)
                      +..-|....|.|.....+++|+||||.||-++.  +|+-+|+|.+.     ......-...|-.+|.+++.+.||.+-.+
T Consensus       174 WK~lE~qpvt~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYA  253 (591)
T KOG0986|consen  174 WKWLELQPVTKNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYA  253 (591)
T ss_pred             HHHHHhhhccccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeee
Confidence            344455666777667789999999999999887  79999999986     22334457789999999999999999888


Q ss_pred             ccc--ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC
Q 005680          399 CSE--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR  476 (683)
Q Consensus       399 ~~~--~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~  476 (683)
                      |..  .+|||+..|.||+|.-+|...        ..+.+++..++.++.+|+.||.+||.   .+||.|||||+|||||+
T Consensus       254 feTkd~LClVLtlMNGGDLkfHiyn~--------g~~gF~e~ra~FYAAEi~cGLehlH~---~~iVYRDLKPeNILLDd  322 (591)
T KOG0986|consen  254 FETKDALCLVLTLMNGGDLKFHIYNH--------GNPGFDEQRARFYAAEIICGLEHLHR---RRIVYRDLKPENILLDD  322 (591)
T ss_pred             ecCCCceEEEEEeecCCceeEEeecc--------CCCCCchHHHHHHHHHHHhhHHHHHh---cceeeccCChhheeecc
Confidence            755  899999999999999999654        44789999999999999999999999   77999999999999999


Q ss_pred             CCcEEEecCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHH
Q 005680          477 NLVAKISGLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQ  532 (683)
Q Consensus       477 ~~~~KL~DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~  532 (683)
                      .|++.|+|+|||..                        +.|+...|+|||||+||||+.|+.||......  .....+..
T Consensus       323 ~GhvRISDLGLAvei~~g~~~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeK--vk~eEvdr  400 (591)
T KOG0986|consen  323 HGHVRISDLGLAVEIPEGKPIRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEK--VKREEVDR  400 (591)
T ss_pred             CCCeEeeccceEEecCCCCccccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhhh--hhHHHHHH
Confidence            99999999999843                        45899999999999999999999999754332  22333444


Q ss_pred             HhcCCCCCCChhhHHHHHHHHHHhhhcCCCcccccc
Q 005680          533 VLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLR  568 (683)
Q Consensus       533 ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs  568 (683)
                      .+-.....+|...++++.+|....|.+|  |.+|..
T Consensus       401 r~~~~~~ey~~kFS~eakslc~~LL~Kd--p~~RLG  434 (591)
T KOG0986|consen  401 RTLEDPEEYSDKFSEEAKSLCEGLLTKD--PEKRLG  434 (591)
T ss_pred             HHhcchhhcccccCHHHHHHHHHHHccC--HHHhcc
Confidence            4444556677889999999999999999  777765

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.96  E-value=1.8e-29  Score=272.31  Aligned_cols=223  Identities=17%  Similarity=0.225  Sum_probs=171.2

Q ss_pred             hhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc------
Q 005680          334 ATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE------  401 (683)
Q Consensus       334 at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~------  401 (683)
                      ..++|.. .+.+|.|+||.||+|..  +|..||||++....    ....+.+|+.+++.++||||+++++++..      
T Consensus        13 ~~~~y~~-~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   91 (343)
T cd07880          13 VPDRYRD-LKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDR   91 (343)
T ss_pred             cccceEE-EEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCccccc
Confidence            3455554 45678999999999987  68999999986321    23468899999999999999999998853      


Q ss_pred             --ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc
Q 005680          402 --LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV  479 (683)
Q Consensus       402 --~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~  479 (683)
                        ..++||||+ +++|.+++.           ...+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.
T Consensus        92 ~~~~~lv~e~~-~~~l~~~~~-----------~~~l~~~~~~~i~~qi~~al~~LH~---~gi~H~dlkp~Nill~~~~~  156 (343)
T cd07880          92 FHDFYLVMPFM-GTDLGKLMK-----------HEKLSEDRIQFLVYQMLKGLKYIHA---AGIIHRDLKPGNLAVNEDCE  156 (343)
T ss_pred             cceEEEEEecC-CCCHHHHHh-----------cCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCC
Confidence              248999999 689988872           2468999999999999999999999   67999999999999999999


Q ss_pred             EEEecCCCccc-----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh---------H
Q 005680          480 AKISGLGLNIC-----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD---------Q  527 (683)
Q Consensus       480 ~KL~DFGla~~-----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~---------~  527 (683)
                      +||+|||++..                       ..++.++|||||||++|+|++|.+||..........         .
T Consensus       157 ~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~  236 (343)
T cd07880         157 LKILDFGLARQTDSEMTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLMEIMKVTGTPS  236 (343)
T ss_pred             EEEeecccccccccCccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCC
Confidence            99999998743                       135678999999999999999999996422110000         0


Q ss_pred             HHH---------HHHhcCC-------CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          528 TTL---------MQVLDGN-------AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       528 ~~~---------~~ild~~-------~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ..+         .......       .......++..+.+++.+||+.|  |.+|||+.+++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~d--P~~R~t~~~~l~  297 (343)
T cd07880         237 KEFVQKLQSEDAKNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLD--AESRITAAEALA  297 (343)
T ss_pred             HHHHHhhcchhHHHHHHhccccCcchHHHhccCCChHHHHHHHHHcCCC--hhhCCCHHHHhc
Confidence            000         0000000       00112345678999999999999  889999999875

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.96  E-value=2.9e-29  Score=270.50  Aligned_cols=221  Identities=20%  Similarity=0.257  Sum_probs=167.1

Q ss_pred             CccccccccccCCceEEEEEEE--CCeeEEEEEcCC--CCCHHHHHHHHHHHHhcCCCCccceeccccc-----------
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN--GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-----------  401 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~--~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-----------  401 (683)
                      +|.. .+.+|.|+||.||+|..  +|..||+|.+..  ......+.+|+.++++++||||+++++++..           
T Consensus         6 ~y~~-~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~   84 (342)
T cd07854           6 RYMD-LRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGS   84 (342)
T ss_pred             ceEE-EEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhccccccccccccc
Confidence            3433 35668999999999998  588999999862  2334678899999999999999999987643           


Q ss_pred             -----ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC
Q 005680          402 -----LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR  476 (683)
Q Consensus       402 -----~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~  476 (683)
                           ..|+||||++ ++|.+++.           ...+++..+..++.||+.||.|||+   .+|+||||||+||+++.
T Consensus        85 ~~~~~~~~lv~e~~~-~~L~~~~~-----------~~~l~~~~~~~~~~qi~~aL~~LH~---~givH~dikp~Nili~~  149 (342)
T cd07854          85 LTELNSVYIVQEYME-TDLANVLE-----------QGPLSEEHARLFMYQLLRGLKYIHS---ANVLHRDLKPANVFINT  149 (342)
T ss_pred             ccccceEEEEeeccc-ccHHHHHH-----------cCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEcC
Confidence                 3689999997 58888772           2358999999999999999999999   67999999999999974


Q ss_pred             -CCcEEEecCCCccc-----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh
Q 005680          477 -NLVAKISGLGLNIC-----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD  526 (683)
Q Consensus       477 -~~~~KL~DFGla~~-----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~  526 (683)
                       ++.+||+|||++..                             ..++.++|||||||++|+|++|++||..........
T Consensus       150 ~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~~~  229 (342)
T cd07854         150 EDLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELEQMQ  229 (342)
T ss_pred             CCceEEECCcccceecCCccccccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence             56789999998741                             135568999999999999999999995322110000


Q ss_pred             -------------HHHH----HH-Hh-cCCCCC-----CChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          527 -------------QTTL----MQ-VL-DGNAGI-----WPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       527 -------------~~~~----~~-il-d~~~~~-----~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                                   ....    .. .. ......     ..+..+.++.+|+.+||..|  |.+|||+.+++..
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~R~t~~ell~h  300 (342)
T cd07854         230 LILESVPVVREEDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFN--PMDRLTAEEALMH  300 (342)
T ss_pred             HHHHhcCCCChHHhhhhhhhhhhhhhhcccccCCCHHHHccCCCHHHHHHHHHHhCCC--chhccCHHHHhCC
Confidence                         0000    00 00 000111     11245678999999999999  8899999998753

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.96  E-value=4.5e-29  Score=258.85  Aligned_cols=217  Identities=22%  Similarity=0.278  Sum_probs=170.3

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      ..+|.|+||.||+|..  ++..||+|.+...    .....+..|+.++++++||||+++++++.+  ..++||||++ ++
T Consensus         5 ~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~~-~~   83 (282)
T cd07829           5 EKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYCD-MD   83 (282)
T ss_pred             hcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCcC-cC
Confidence            4568899999999998  5899999998732    234578889999999999999999999866  7899999998 59


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++...         ...+++..+..++.+++.||.|||+   .+|+||||+|+||+++.++.++|+|||++..    
T Consensus        84 l~~~i~~~---------~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~  151 (282)
T cd07829          84 LKKYLDKR---------PGPLSPNLIKSIMYQLLRGLAYCHS---HRILHRDLKPQNILINRDGVLKLADFGLARAFGIP  151 (282)
T ss_pred             HHHHHHhh---------ccCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChheEEEcCCCCEEEecCCcccccCCC
Confidence            99999422         2579999999999999999999999   6799999999999999999999999998742    


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh----------HHHHHHH-----
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD----------QTTLMQV-----  533 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~----------~~~~~~i-----  533 (683)
                                            ..++.++|||||||++|+|++|.+||..........          ......+     
T Consensus       152 ~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (282)
T cd07829         152 LRTYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEESWPGVTKLPD  231 (282)
T ss_pred             ccccCccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCcHHHHHhhccccc
Confidence                                  145678999999999999999999986432210000          0000000     


Q ss_pred             hcCCCCCC--------ChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          534 LDGNAGIW--------PLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       534 ld~~~~~~--------p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .+.....+        .+..+..+.+++.+||..|  |..||++.+++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~--P~~Rp~~~~~l~  278 (282)
T cd07829         232 YKPTFPKFPPKDLEKVLPRLDPEGIDLLSKMLQYN--PAKRISAKEALK  278 (282)
T ss_pred             ccccccccCccchHHhcccccHHHHHHHHHhhccC--cccCCCHHHHhh
Confidence            00000000        1134678999999999999  889999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.96  E-value=4.1e-29  Score=266.75  Aligned_cols=223  Identities=20%  Similarity=0.248  Sum_probs=173.4

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc-------ceeEEEe
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-------LKCIVFE  408 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-------~~~LV~E  408 (683)
                      .+.+|.|+||.||+|..  +|..||||++...    .....+.+|+.+++.++||||+++++++..       ..|+|||
T Consensus         5 ~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~lv~e   84 (330)
T cd07834           5 LKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVYIVTE   84 (330)
T ss_pred             eeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceEEEec
Confidence            35678999999999998  4799999998732    234678999999999999999999999854       4699999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCc
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN  488 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla  488 (683)
                      |++ ++|.+++.          ....+++..+..++.+|+.||.|||+   .+|+||||||+|||++.++.++|+|||++
T Consensus        85 ~~~-~~l~~~l~----------~~~~l~~~~~~~i~~~l~~~l~~LH~---~gi~H~dlkp~nili~~~~~~~L~dfg~~  150 (330)
T cd07834          85 LME-TDLHKVIK----------SPQPLTDDHIQYFLYQILRGLKYLHS---ANVIHRDLKPSNILVNSNCDLKICDFGLA  150 (330)
T ss_pred             chh-hhHHHHHh----------CCCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEcccCce
Confidence            998 58988883          44589999999999999999999999   67999999999999999999999999987


Q ss_pred             cc----------------------------c-CCCcccccccHHHHHHHHhhCCCCchhhHHHhhh--------------
Q 005680          489 IC----------------------------D-QLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMAL--------------  525 (683)
Q Consensus       489 ~~----------------------------~-~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~--------------  525 (683)
                      ..                            . .++.++||||||+++|+|++|++||.........              
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~  230 (330)
T cd07834         151 RGVDPDEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVEVLGTPSEED  230 (330)
T ss_pred             EeecccccccccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHhcCCCChhH
Confidence            42                            1 4567899999999999999999998542211000              


Q ss_pred             ----hHHHHHHHhcC--CC-----CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH--HHHHH
Q 005680          526 ----DQTTLMQVLDG--NA-----GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE--LDEVR  580 (683)
Q Consensus       526 ----~~~~~~~ild~--~~-----~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~--L~~l~  580 (683)
                          ........+..  ..     ....+..+..+.+++.+||+.+  |..|||+.+++..  ++.+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--P~~Rpt~~~ll~~~~~~~~~  296 (330)
T cd07834         231 LKFITSEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFD--PKKRITADEALAHPYLAQLH  296 (330)
T ss_pred             hhhccccchhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCC--hhhCCCHHHHHhCccHHhhc
Confidence                00000000000  00     0011235778999999999999  8899999999874  44443

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.96  E-value=4.8e-29  Score=288.49  Aligned_cols=229  Identities=23%  Similarity=0.373  Sum_probs=191.3

Q ss_pred             cccccCCceEEEEEEEC---------CeeEEEEEcCCCC---CHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEE
Q 005680          343 RLKCAGDWTNVYRGRLN---------HASVAIKTLNNGL---SEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVF  407 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~---------g~~VAvK~l~~~~---~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~  407 (683)
                      +.+|.|.||.|++|...         ...||||.++...   ..+.+..|+.+|..+ .|||||.++|+|..  ..++|+
T Consensus       302 ~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t~~~~~~~v~  381 (609)
T KOG0200|consen  302 KYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACTQDGPLYVIV  381 (609)
T ss_pred             ceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeeccCCceEEEE
Confidence            37789999999999862         3579999998433   347899999999999 59999999999976  789999


Q ss_pred             eecCCCCchhhhhhcccccccc----ccc--ccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEE
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNC----SRA--RALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAK  481 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~----~~~--~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~K  481 (683)
                      ||+..|+|..+|...+......    ...  ..|+..+.+.++.|||.|+.||++   +++|||||-..|||+..+..+|
T Consensus       382 Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~---~~~vHRDLAaRNVLi~~~~~~k  458 (609)
T KOG0200|consen  382 EYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLAS---VPCVHRDLAARNVLITKNKVIK  458 (609)
T ss_pred             EeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhh---CCccchhhhhhhEEecCCCEEE
Confidence            9999999999997664000000    011  359999999999999999999999   7799999999999999999999


Q ss_pred             EecCCCccc----------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHH
Q 005680          482 ISGLGLNIC----------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQ  532 (683)
Q Consensus       482 L~DFGla~~----------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~  532 (683)
                      |+|||+|+.                            ..|+.+||||||||+||||+| |..||..+.    .....+..
T Consensus       459 IaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~----~~~~l~~~  534 (609)
T KOG0200|consen  459 IADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIP----PTEELLEF  534 (609)
T ss_pred             EccccceeccCCCCceEecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCC----cHHHHHHH
Confidence            999999963                            247889999999999999999 888886522    12233445


Q ss_pred             HhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          533 VLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       533 ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      +.++.+...|..++.++.+++..||+.+  |..||++.++.+.|..+.
T Consensus       535 l~~G~r~~~P~~c~~eiY~iM~~CW~~~--p~~RP~F~~~~~~~~~~l  580 (609)
T KOG0200|consen  535 LKEGNRMEQPEHCSDEIYDLMKSCWNAD--PEDRPTFSECVEFFEKHL  580 (609)
T ss_pred             HhcCCCCCCCCCCCHHHHHHHHHHhCCC--cccCCCHHHHHHHHHHHH
Confidence            6667788889999999999999999999  789999999999999854

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.96  E-value=3.7e-29  Score=277.26  Aligned_cols=166  Identities=25%  Similarity=0.337  Sum_probs=143.8

Q ss_pred             ccccccccCCceEEEEEEE--CCeeEEEEEcCCCC-CHHHHHHHHHHHHhcC-C-----CCccceecccc--cceeEEEe
Q 005680          340 ERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-SEEDFQAKVSFLTAVR-H-----PHLVAVMGCCS--ELKCIVFE  408 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-~~~~~~~Ev~iL~~l~-H-----pnIV~l~g~~~--~~~~LV~E  408 (683)
                      ....++|+|+||.|-+|.+  ++..||||+++... -..+-..|+.+|..|+ |     -|+|+++++|.  ++.|||+|
T Consensus       189 ~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~HlciVfE  268 (586)
T KOG0667|consen  189 EVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCIVFE  268 (586)
T ss_pred             EEEEEecccccceeEEEEecCCCcEEEEEeeccChHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccceeeeeh
Confidence            4467899999999999998  68999999998433 3356678999999996 4     48999999985  49999999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC--CcEEEecCC
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN--LVAKISGLG  486 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~--~~~KL~DFG  486 (683)
                      .+. .+|.++|...        ...+|+...+..|+.||+.||.+||.   .+|||+||||+||||.+-  ..+||+|||
T Consensus       269 LL~-~NLYellK~n--------~f~Glsl~~ir~~~~Qil~~L~~L~~---l~IIHcDLKPENILL~~~~r~~vKVIDFG  336 (586)
T KOG0667|consen  269 LLS-TNLYELLKNN--------KFRGLSLPLVRKFAQQILTALLFLHE---LGIIHCDLKPENILLKDPKRSRIKVIDFG  336 (586)
T ss_pred             hhh-hhHHHHHHhc--------CCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCChhheeeccCCcCceeEEecc
Confidence            996 7999999654        45669999999999999999999999   679999999999999653  479999999


Q ss_pred             Cccc----------------------cCCCcccccccHHHHHHHHhhCCCCch
Q 005680          487 LNIC----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAG  517 (683)
Q Consensus       487 la~~----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~  517 (683)
                      .|..                      ..|+.+.||||||||+.||++|.|-|.
T Consensus       337 SSc~~~q~vytYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfp  389 (586)
T KOG0667|consen  337 SSCFESQRVYTYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFP  389 (586)
T ss_pred             cccccCCcceeeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccC
Confidence            9854                      468999999999999999999988773

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=1.4e-29  Score=293.66  Aligned_cols=217  Identities=23%  Similarity=0.303  Sum_probs=164.8

Q ss_pred             hcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--------
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--------  401 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--------  401 (683)
                      ..+|. .+.++|+||||.||+++.  +|+.||||++.-..+   ...+.+|+.+|++|+|||||++|..|.+        
T Consensus       478 ~~DFE-EL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~~~~~  556 (1351)
T KOG1035|consen  478 LNDFE-ELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAELTVL  556 (1351)
T ss_pred             hhhhH-HHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCccccc
Confidence            34553 457889999999999997  899999999983322   3468899999999999999999864311        


Q ss_pred             --------------------------------------------------------------------------------
Q 005680          402 --------------------------------------------------------------------------------  401 (683)
Q Consensus       402 --------------------------------------------------------------------------------  401 (683)
                                                                                                      
T Consensus       557 ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~tS~~  636 (1351)
T KOG1035|consen  557 EIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSNTSDS  636 (1351)
T ss_pred             cccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCccccccccccccccccccc
Confidence                                                                                            


Q ss_pred             ---------------------------------ceeEEEeecCCCCchhhhhhcccccccccccccC-CHHHHHHHHHHH
Q 005680          402 ---------------------------------LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARAL-RWLDRIHIAHEV  447 (683)
Q Consensus       402 ---------------------------------~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L-~~~~~~~I~~qI  447 (683)
                                                       .+||-||||+..+|.+++...          ... .-...++++.+|
T Consensus       637 e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N----------~~~~~~d~~wrLFreI  706 (1351)
T KOG1035|consen  637 EGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRN----------HFNSQRDEAWRLFREI  706 (1351)
T ss_pred             CCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhc----------ccchhhHHHHHHHHHH
Confidence                                             015667777776666666432          111 356778999999


Q ss_pred             HhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-------------------------------------
Q 005680          448 CLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-------------------------------------  490 (683)
Q Consensus       448 a~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-------------------------------------  490 (683)
                      +.||.|+|+   +|||||||||.||+||+++.+||+|||+|..                                     
T Consensus       707 lEGLaYIH~---~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvA  783 (1351)
T KOG1035|consen  707 LEGLAYIHD---QGIIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVA  783 (1351)
T ss_pred             HHHHHHHHh---CceeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeec
Confidence            999999999   7799999999999999999999999999843                                     


Q ss_pred             ---------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCC---ChhhHHHHHHHHHHhhh
Q 005680          491 ---------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIW---PLDLAEELAGIALKCLS  558 (683)
Q Consensus       491 ---------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~---p~~~~~~l~~Li~~CL~  558 (683)
                               ..|+.|+|+|||||||+||+.   ||+..-.    ....+..+-++..+..   .....+.-..+|.++++
T Consensus       784 PEll~~~~~~~Yn~KiDmYSLGIVlFEM~y---PF~TsME----Ra~iL~~LR~g~iP~~~~f~~~~~~~e~slI~~Ll~  856 (1351)
T KOG1035|consen  784 PELLSDTSSNKYNSKIDMYSLGIVLFEMLY---PFGTSME----RASILTNLRKGSIPEPADFFDPEHPEEASLIRWLLS  856 (1351)
T ss_pred             HHHhcccccccccchhhhHHHHHHHHHHhc---cCCchHH----HHHHHHhcccCCCCCCcccccccchHHHHHHHHHhc
Confidence                     148899999999999999996   4653211    1222333333322222   33445667899999999


Q ss_pred             cCCCccccccHHHHHH
Q 005680          559 ADQDANRDLRIAGVMK  574 (683)
Q Consensus       559 ~dP~p~~RPs~~eVl~  574 (683)
                      .|  |.+|||+.+++.
T Consensus       857 hd--P~kRPtA~eLL~  870 (1351)
T KOG1035|consen  857 HD--PSKRPTATELLN  870 (1351)
T ss_pred             CC--CccCCCHHHHhh
Confidence            99  889999999874

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.96  E-value=7.4e-29  Score=261.24  Aligned_cols=222  Identities=20%  Similarity=0.263  Sum_probs=167.8

Q ss_pred             hcCccccccccccCCceEEEEEEE--CCeeEEEEEcCC----CCCHHHHHHHHHHHHhcCCCCccceeccccc-------
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-------  401 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-------  401 (683)
                      .++|... +.+|.|+||.||+|..  ++..||||++..    ......+.+|+.+++.++||||+++++++.+       
T Consensus         7 ~~~y~~~-~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   85 (311)
T cd07866           7 LRDYEIL-GKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKR   85 (311)
T ss_pred             cccEEEE-EEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheecccccccc
Confidence            4566544 4568899999999998  578999999862    1223467899999999999999999988743       


Q ss_pred             ---ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCC
Q 005680          402 ---LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL  478 (683)
Q Consensus       402 ---~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~  478 (683)
                         ..++||||+. ++|...+.         .....+++..+..++.||+.||.|||+   .+|+|+||||+|||++.++
T Consensus        86 ~~~~~~lv~~~~~-~~l~~~~~---------~~~~~~~~~~~~~i~~~l~~al~~lH~---~~i~H~dl~p~nil~~~~~  152 (311)
T cd07866          86 KRGSVYMVTPYMD-HDLSGLLE---------NPSVKLTESQIKCYMLQLLEGINYLHE---NHILHRDIKAANILIDNQG  152 (311)
T ss_pred             cCceEEEEEecCC-cCHHHHHh---------ccccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCC
Confidence               3689999997 46777663         234569999999999999999999999   6799999999999999999


Q ss_pred             cEEEecCCCccc-------------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHH
Q 005680          479 VAKISGLGLNIC-------------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEK  521 (683)
Q Consensus       479 ~~KL~DFGla~~-------------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~  521 (683)
                      .+||+|||++..                                     ..++.++|||||||++|+|++|++||.....
T Consensus       153 ~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~  232 (311)
T cd07866         153 ILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSD  232 (311)
T ss_pred             CEEECcCccchhccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCH
Confidence            999999998742                                     1256789999999999999999999863221


Q ss_pred             HhhhhHHHHHHHh--------------c-----CCCCCCC-------hhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          522 AMALDQTTLMQVL--------------D-----GNAGIWP-------LDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       522 ~~~~~~~~~~~il--------------d-----~~~~~~p-------~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ....  ..+....              .     ......+       ....+.+.+++.+||+.|  |.+|||+.+++.
T Consensus       233 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~--p~~R~t~~ell~  307 (311)
T cd07866         233 IDQL--HLIFKLCGTPTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLD--PYKRLTASDALE  307 (311)
T ss_pred             HHHH--HHHHHHhCCCChhhchhhhhcccccccccCCCCCccHHHHcccCChhHHHHHHHHcccC--cccCcCHHHHhc
Confidence            1000  0000000              0     0000111       123367889999999999  889999988864

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.96  E-value=5.4e-29  Score=268.47  Aligned_cols=224  Identities=18%  Similarity=0.239  Sum_probs=171.3

Q ss_pred             hhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc--c---
Q 005680          334 ATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--L---  402 (683)
Q Consensus       334 at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~---  402 (683)
                      ..++|.. ...+|.|+||.||+|..  ++..||||++...    .....+.+|+.+++.++||||+++++++..  .   
T Consensus        13 ~~~~y~~-~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   91 (343)
T cd07851          13 VPDRYQN-LSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLED   91 (343)
T ss_pred             ccCceEE-EEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccc
Confidence            4556654 45678999999999998  5789999998632    123567789999999999999999987743  2   


Q ss_pred             ---eeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc
Q 005680          403 ---KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV  479 (683)
Q Consensus       403 ---~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~  479 (683)
                         .++|+||+ +++|.+++.           ...+++..+..++.||+.||.|||+   .+|+||||||+||+++.++.
T Consensus        92 ~~~~~lv~e~~-~~~L~~~~~-----------~~~l~~~~~~~~~~ql~~aL~~LH~---~gi~H~dlkp~Nill~~~~~  156 (343)
T cd07851          92 FQDVYLVTHLM-GADLNNIVK-----------CQKLSDDHIQFLVYQILRGLKYIHS---AGIIHRDLKPSNIAVNEDCE  156 (343)
T ss_pred             cccEEEEEecC-CCCHHHHHh-----------cCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCC
Confidence               78999998 579999883           2468999999999999999999999   67999999999999999999


Q ss_pred             EEEecCCCccc-----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh----------
Q 005680          480 AKISGLGLNIC-----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD----------  526 (683)
Q Consensus       480 ~KL~DFGla~~-----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~----------  526 (683)
                      +||+|||++..                       ..++.++|||||||++|+|++|++||..........          
T Consensus       157 ~kL~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~~~~~~~~i~~~~~~~~  236 (343)
T cd07851         157 LKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHIDQLKRIMNLVGTPD  236 (343)
T ss_pred             EEEccccccccccccccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHhcCCCC
Confidence            99999998753                       135678999999999999999999985322110000          


Q ss_pred             H--------HHHHHHhcCC----CCC---CChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          527 Q--------TTLMQVLDGN----AGI---WPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       527 ~--------~~~~~ild~~----~~~---~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .        ......+...    ...   .....+..+.+++.+||+.|  |..|||+.+|+..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~--P~~Rpt~~ell~h  298 (343)
T cd07851         237 EELLQKISSESARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLD--PDKRITAAEALAH  298 (343)
T ss_pred             HHHHhhccchhHHHHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCC--hhhCCCHHHHhcC
Confidence            0        0000000000    000   01134778999999999999  8899999998643

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=1.9e-29  Score=286.33  Aligned_cols=228  Identities=14%  Similarity=0.174  Sum_probs=158.0

Q ss_pred             cCccccccccccCCceEEEEEEEC---CeeEEEE------------------EcC-CCCCHHHHHHHHHHHHhcCCCCcc
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRLN---HASVAIK------------------TLN-NGLSEEDFQAKVSFLTAVRHPHLV  393 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~~---g~~VAvK------------------~l~-~~~~~~~~~~Ev~iL~~l~HpnIV  393 (683)
                      ++|... +.+|+|+||.||+|...   +..+++|                  .+. .......+.+|+.+|.+++|||||
T Consensus       148 ~~Y~ii-~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnIv  226 (501)
T PHA03210        148 AHFRVI-DDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENIL  226 (501)
T ss_pred             hccEEE-eEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCcC
Confidence            455443 56689999999998762   2222222                  111 111234688999999999999999


Q ss_pred             ceeccccc--ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCc
Q 005680          394 AVMGCCSE--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSS  471 (683)
Q Consensus       394 ~l~g~~~~--~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~N  471 (683)
                      ++++++.+  ..|+|++++. ++|..++.....     ..........+..|+.||+.||.|||+   .+||||||||+|
T Consensus       227 ~l~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~-----~~~~~~~~~~~~~i~~ql~~aL~yLH~---~gIiHrDLKP~N  297 (501)
T PHA03210        227 KIEEILRSEANTYMITQKYD-FDLYSFMYDEAF-----DWKDRPLLKQTRAIMKQLLCAVEYIHD---KKLIHRDIKLEN  297 (501)
T ss_pred             cEeEEEEECCeeEEEEeccc-cCHHHHHhhccc-----cccccccHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHH
Confidence            99999865  7889999995 678777743311     112233456778899999999999999   679999999999


Q ss_pred             ccccCCCcEEEecCCCccc--------------------------cCCCcccccccHHHHHHHHhhCCC-CchhhHH--H
Q 005680          472 ILLDRNLVAKISGLGLNIC--------------------------DQLNVRSDIRAFGTLLLHLLTGRN-WAGLVEK--A  522 (683)
Q Consensus       472 ILld~~~~~KL~DFGla~~--------------------------~~~t~ksDVwSlGviL~eLltG~~-Pf~~~~~--~  522 (683)
                      |||+.++.+||+|||+++.                          ..++.++|||||||++|||++|.. |+.....  .
T Consensus       298 ILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~~~~~  377 (501)
T PHA03210        298 IFLNCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCPIGDGGGKPG  377 (501)
T ss_pred             EEECCCCCEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCccCCCCCHH
Confidence            9999999999999999842                          236788999999999999999874 4431100  0


Q ss_pred             hhh----------------hHHHHHHHhcCC----C-CCCC-----hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          523 MAL----------------DQTTLMQVLDGN----A-GIWP-----LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       523 ~~~----------------~~~~~~~ild~~----~-~~~p-----~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ...                ....+...++..    . ...+     ..++..+.+++.+||..|  |.+|||+.+++..
T Consensus       378 ~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~kmL~~D--P~~Rpsa~elL~h  454 (501)
T PHA03210        378 KQLLKIIDSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIRNLGLPADFEYPLVKMLTFD--WHLRPGAAELLAL  454 (501)
T ss_pred             HHHHHHHHhcccChhhcCCcHHHHHHHhhhhhcccCccchhhHHHhcCCChHHHHHHHHHhccC--cccCcCHHHHhhC
Confidence            000                000011111110    0 0000     123456788899999999  8899999999763

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.96  E-value=7.6e-29  Score=264.55  Aligned_cols=226  Identities=24%  Similarity=0.375  Sum_probs=177.1

Q ss_pred             cccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHh--cCCCCccceeccccc------ceeEEEeecCCCC
Q 005680          343 RLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTA--VRHPHLVAVMGCCSE------LKCIVFEYMPNGN  414 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~--l~HpnIV~l~g~~~~------~~~LV~Ey~~ggs  414 (683)
                      .++|+|.||.||+|.++++.||||+++ ....+.|..|-+|.+.  ++|+||++|+++-..      .++||++|.+.||
T Consensus       216 eli~~Grfg~V~KaqL~~~~VAVKifp-~~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLVt~fh~kGs  294 (534)
T KOG3653|consen  216 ELIGRGRFGCVWKAQLDNRLVAVKIFP-EQEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLVTEFHPKGS  294 (534)
T ss_pred             HHhhcCccceeehhhccCceeEEEecC-HHHHHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEEeeeccCCc
Confidence            578999999999999999999999995 4456778888888775  489999999998632      6899999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCC------CcEEeccCCCCcccccCCCcEEEecCCCc
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEP------RPIVHGSLTPSSILLDRNLVAKISGLGLN  488 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~------~~IiHrDLKP~NILld~~~~~KL~DFGla  488 (683)
                      |.++|           ....++|....+|+..+++||+|||..-|      ++|+|||||..||||..|+++.|+|||||
T Consensus       295 L~dyL-----------~~ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLA  363 (534)
T KOG3653|consen  295 LCDYL-----------KANTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLA  363 (534)
T ss_pred             HHHHH-----------HhccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeecccee
Confidence            99999           34579999999999999999999998643      46999999999999999999999999998


Q ss_pred             cc--------------------------cCC--C-----cccccccHHHHHHHHhhCCCCc--hhhHH------Hhh---
Q 005680          489 IC--------------------------DQL--N-----VRSDIRAFGTLLLHLLTGRNWA--GLVEK------AMA---  524 (683)
Q Consensus       489 ~~--------------------------~~~--t-----~ksDVwSlGviL~eLltG~~Pf--~~~~~------~~~---  524 (683)
                      ..                          +..  .     .+.||||+|.|||||++...-+  +.+..      ...   
T Consensus       364 l~~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~h  443 (534)
T KOG3653|consen  364 LRLEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGNH  443 (534)
T ss_pred             EEecCCCCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcCC
Confidence            53                          001  1     3689999999999999965322  11111      000   


Q ss_pred             hhHHHHHH--HhcCCCCCCChh-----hHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          525 LDQTTLMQ--VLDGNAGIWPLD-----LAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       525 ~~~~~~~~--ild~~~~~~p~~-----~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      ..-+.+..  +.+..++.+|..     -...+.+.+..||..|  |..|.|+.-|.+.+..+...
T Consensus       444 Pt~e~mq~~VV~kK~RP~~p~~W~~h~~~~~l~et~EeCWDhD--aeARLTA~Cv~eR~~~l~~~  506 (534)
T KOG3653|consen  444 PTLEEMQELVVRKKQRPKIPDAWRKHAGMAVLCETIEECWDHD--AEARLTAGCVEERMAELMML  506 (534)
T ss_pred             CCHHHHHHHHHhhccCCCChhhhhcCccHHHHHHHHHHHcCCc--hhhhhhhHHHHHHHHHHhcc
Confidence            01112222  223355556543     3567899999999888  88999999999998888654

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.96  E-value=1.1e-28  Score=264.62  Aligned_cols=217  Identities=18%  Similarity=0.221  Sum_probs=165.5

Q ss_pred             ccccccCCceEEEEEEE--C--CeeEEEEEcCCC----CCHHHHHHHHHHHHhc-CCCCccceecccc------cceeEE
Q 005680          342 FRLKCAGDWTNVYRGRL--N--HASVAIKTLNNG----LSEEDFQAKVSFLTAV-RHPHLVAVMGCCS------ELKCIV  406 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~--g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~------~~~~LV  406 (683)
                      .+.+|.|+||.||++..  .  +..||||.+...    .....+.+|+.++.++ .||||+++++++.      ...+++
T Consensus         5 ~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~   84 (332)
T cd07857           5 IKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNELYLY   84 (332)
T ss_pred             EEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCcEEEE
Confidence            35678999999999998  3  678999998632    1235678899999999 5999999998642      246888


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      ++|+. ++|.+++          .....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||
T Consensus        85 ~e~~~-~~L~~~l----------~~~~~~~~~~~~~~~~qi~~aL~~LH~---~givH~dlkp~Nili~~~~~~kl~Dfg  150 (332)
T cd07857          85 EELME-ADLHQII----------RSGQPLTDAHFQSFIYQILCGLKYIHS---ANVLHRDLKPGNLLVNADCELKICDFG  150 (332)
T ss_pred             Eeccc-CCHHHHH----------hcCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHeEEcCCCCEEeCcCC
Confidence            99886 6899888          345679999999999999999999999   679999999999999999999999999


Q ss_pred             Cccc------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhh----------hh
Q 005680          487 LNIC------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMA----------LD  526 (683)
Q Consensus       487 la~~------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~----------~~  526 (683)
                      ++..                              ..++.++|||||||++|+|++|.+||........          ..
T Consensus       151 ~a~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~  230 (332)
T cd07857         151 LARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQVLGTPD  230 (332)
T ss_pred             CceecccccccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCCHHHHHHHHHHHhCCCC
Confidence            8741                              1356789999999999999999999864221000          00


Q ss_pred             HHHHHHH-----------hcC-CCCC---CChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          527 QTTLMQV-----------LDG-NAGI---WPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       527 ~~~~~~i-----------ld~-~~~~---~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ...+..+           ... ....   ..+.++..+.+++.+||+.|  |..|||+.+++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--P~~R~t~~~ll~  291 (332)
T cd07857         231 EETLSRIGSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFD--PTKRISVEEALE  291 (332)
T ss_pred             HHHHHhhhhhhHHHHHHhccccCCcchHhhCCCCCHHHHHHHHHHccCC--cccCCCHHHHhc
Confidence            0000000           000 0000   11234678999999999999  889999999864

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.95  E-value=9.9e-28  Score=240.65  Aligned_cols=206  Identities=25%  Similarity=0.358  Sum_probs=169.0

Q ss_pred             CceEEEEEEE--CCeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCchhhhhh
Q 005680          349 DWTNVYRGRL--NHASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRDKLFT  421 (683)
Q Consensus       349 ~fG~Vykg~~--~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~~L~~  421 (683)
                      +||.||+|..  +|..||+|++.....   ...+.+|+..+++++|+||+++++++..  ..+++|||+++++|..++..
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~   80 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKK   80 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHh
Confidence            4899999998  469999999974332   5789999999999999999999999865  78999999999999999842


Q ss_pred             cccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-----------
Q 005680          422 SQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-----------  490 (683)
Q Consensus       422 ~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-----------  490 (683)
                                ...+++..+..++.+++.+|.|||.   .+++|+||+|+||+++.++.++|+|||.+..           
T Consensus        81 ----------~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~  147 (244)
T smart00220       81 ----------RGRLSEDEARFYARQILSALEYLHS---NGIIHRDLKPENILLDEDGHVKLADFGLARQLDPGGLLTTFV  147 (244)
T ss_pred             ----------ccCCCHHHHHHHHHHHHHHHHHHHH---cCeecCCcCHHHeEECCCCcEEEccccceeeecccccccccc
Confidence                      2338999999999999999999999   6799999999999999999999999998743           


Q ss_pred             -------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChh---hHHHHHHHHH
Q 005680          491 -------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLD---LAEELAGIAL  554 (683)
Q Consensus       491 -------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~---~~~~l~~Li~  554 (683)
                                   ..++.++||||||+++|+|++|.+||.....     .......+.......+..   ++..+.+++.
T Consensus       148 ~~~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  222 (244)
T smart00220      148 GTPEYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPGDDQ-----LLELFKKIGKPKPPFPPPEWKISPEAKDLIR  222 (244)
T ss_pred             CCcCCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCc-----HHHHHHHHhccCCCCccccccCCHHHHHHHH
Confidence                         2356799999999999999999999865211     112222222222222111   7789999999


Q ss_pred             HhhhcCCCccccccHHHHHH
Q 005680          555 KCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       555 ~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +||..+  |..||++.++++
T Consensus       223 ~~l~~~--p~~Rp~~~~~~~  240 (244)
T smart00220      223 KLLVKD--PEKRLTAEEALQ  240 (244)
T ss_pred             HHccCC--chhccCHHHHhh
Confidence            999999  779999999875

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=8.6e-29  Score=259.13  Aligned_cols=206  Identities=22%  Similarity=0.326  Sum_probs=172.9

Q ss_pred             ccccccCCceEEEEEEECC--eeEEEEEcCCCC-----CHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEEeecC
Q 005680          342 FRLKCAGDWTNVYRGRLNH--ASVAIKTLNNGL-----SEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~g--~~VAvK~l~~~~-----~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      ..++|+|+||.|.++...|  ..+|||+++.+.     +.+--+.|-++|... +-|.+|++..+|+.  .+|.||||+.
T Consensus       354 l~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLyFVMEyvn  433 (683)
T KOG0696|consen  354 LMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLYFVMEYVN  433 (683)
T ss_pred             EEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhheeeEEEEec
Confidence            4688999999999999854  679999998432     233345677777766 57889999998876  8999999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      ||+|.-.+          ..-+.+.+..+..++.+||-||-|||+   ++||.||||.+|||||.+|++||+|||+++. 
T Consensus       434 GGDLMyhi----------QQ~GkFKEp~AvFYAaEiaigLFFLh~---kgIiYRDLKLDNvmLd~eGHiKi~DFGmcKEn  500 (683)
T KOG0696|consen  434 GGDLMYHI----------QQVGKFKEPVAVFYAAEIAIGLFFLHS---KGIIYRDLKLDNVMLDSEGHIKIADFGMCKEN  500 (683)
T ss_pred             CchhhhHH----------HHhcccCCchhhhhhHHHHHHhhhhhc---CCeeeeeccccceEeccCCceEeeeccccccc
Confidence            99999999          456778889999999999999999999   8899999999999999999999999999864 


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhH
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLA  546 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~  546 (683)
                                              ..|+..+|+|||||+||||+.|.+||+..+.     ...+..+.+ ....+|..++
T Consensus       501 i~~~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE-----~elF~aI~e-hnvsyPKslS  574 (683)
T KOG0696|consen  501 IFDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDE-----DELFQAIME-HNVSYPKSLS  574 (683)
T ss_pred             ccCCcceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCCCH-----HHHHHHHHH-ccCcCccccc
Confidence                                    4688999999999999999999999986322     233334444 4557888999


Q ss_pred             HHHHHHHHHhhhcCCCcccccc
Q 005680          547 EELAGIALKCLSADQDANRDLR  568 (683)
Q Consensus       547 ~~l~~Li~~CL~~dP~p~~RPs  568 (683)
                      .+..+++...|.+.  |.+|..
T Consensus       575 kEAv~ickg~ltK~--P~kRLG  594 (683)
T KOG0696|consen  575 KEAVAICKGLLTKH--PGKRLG  594 (683)
T ss_pred             HHHHHHHHHHhhcC--CccccC
Confidence            99999999999999  667754

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=2.6e-28  Score=258.79  Aligned_cols=225  Identities=21%  Similarity=0.287  Sum_probs=174.7

Q ss_pred             ccccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHh--cCCCCccceeccccc------ceeEEEeecCCC
Q 005680          342 FRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTA--VRHPHLVAVMGCCSE------LKCIVFEYMPNG  413 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~--l~HpnIV~l~g~~~~------~~~LV~Ey~~gg  413 (683)
                      .+.+|+|.||.||+|.|.|..||||++. ..+...+.+|.+|...  |+|+||+.|+++-..      .+|||++|.+.|
T Consensus       216 ~e~IGkGRyGEVwrG~wrGe~VAVKiF~-srdE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLwLvTdYHe~G  294 (513)
T KOG2052|consen  216 QEIIGKGRFGEVWRGRWRGEDVAVKIFS-SRDERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLWLVTDYHEHG  294 (513)
T ss_pred             EEEecCccccceeeccccCCceEEEEec-ccchhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEEEeeecccCC
Confidence            4678999999999999999999999995 3445677888888775  499999999987522      789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccC-----CCCcEEeccCCCCcccccCCCcEEEecCCCc
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHST-----EPRPIVHGSLTPSSILLDRNLVAKISGLGLN  488 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~-----~~~~IiHrDLKP~NILld~~~~~KL~DFGla  488 (683)
                      ||.|+|           ....++-...++++..+|.||++||..     +.+.|.|||||+.|||+..+|.+.|+|+|||
T Consensus       295 SL~DyL-----------~r~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLA  363 (513)
T KOG2052|consen  295 SLYDYL-----------NRNTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA  363 (513)
T ss_pred             cHHHHH-----------hhccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceee
Confidence            999999           346799999999999999999999953     4356999999999999999999999999998


Q ss_pred             ccc----------------------------C-------CCcccccccHHHHHHHHhhCC----------CCchhhHHHh
Q 005680          489 ICD----------------------------Q-------LNVRSDIRAFGTLLLHLLTGR----------NWAGLVEKAM  523 (683)
Q Consensus       489 ~~~----------------------------~-------~t~ksDVwSlGviL~eLltG~----------~Pf~~~~~~~  523 (683)
                      ...                            .       .=..+||||||.|+||++...          +||..+-...
T Consensus       364 v~h~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~D  443 (513)
T KOG2052|consen  364 VRHDSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSD  443 (513)
T ss_pred             EEecccCCcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCC
Confidence            430                            0       013589999999999997632          5654321110


Q ss_pred             hhhHHHHHHHh--cCCCCCCCh-----hhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHH
Q 005680          524 ALDQTTLMQVL--DGNAGIWPL-----DLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRK  581 (683)
Q Consensus       524 ~~~~~~~~~il--d~~~~~~p~-----~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~  581 (683)
                       .....+..++  +..++..|.     .....+.+|+..||..+  |..|.|+--+-+.|.++..
T Consensus       444 -Ps~eeMrkVVCv~~~RP~ipnrW~s~~~l~~m~klMkeCW~~N--p~aRltALriKKtl~~l~~  505 (513)
T KOG2052|consen  444 -PSFEEMRKVVCVQKLRPNIPNRWKSDPALRVMAKLMKECWYAN--PAARLTALRIKKTLAKLSN  505 (513)
T ss_pred             -CCHHHHhcceeecccCCCCCcccccCHHHHHHHHHHHHhhcCC--chhhhHHHHHHHHHHHHhc
Confidence             1112222222  223333332     45678999999999999  7799999888888887753

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.95  E-value=8.4e-29  Score=252.12  Aligned_cols=224  Identities=20%  Similarity=0.267  Sum_probs=171.2

Q ss_pred             ccccccCCceEEEEEEEC------CeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc---ceeEEEe
Q 005680          342 FRLKCAGDWTNVYRGRLN------HASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE---LKCIVFE  408 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~------g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~---~~~LV~E  408 (683)
                      ...+|+|.||.||++...      ...+|||.++..    .-.....+|+.+++.++|||||.+..++.+   ..+|++|
T Consensus        29 ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~v~l~fd  108 (438)
T KOG0666|consen   29 IGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDKKVWLLFD  108 (438)
T ss_pred             cceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCceEEEEeh
Confidence            345689999999999651      247999999833    223567899999999999999999998854   7899999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC----CcEEEec
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN----LVAKISG  484 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~----~~~KL~D  484 (683)
                      |.+ -+|..+|+..+.     .....++-..+..|+.||+.|+.|||++   -|+||||||.||||..+    |.+||+|
T Consensus       109 YAE-hDL~~II~fHr~-----~~~~~lp~~mvKsilwQil~Gv~YLH~N---WvlHRDLKPaNIlvmgdgperG~VKIaD  179 (438)
T KOG0666|consen  109 YAE-HDLWHIIKFHRA-----SKAKQLPRSMVKSILWQILDGVHYLHSN---WVLHRDLKPANILVMGDGPERGRVKIAD  179 (438)
T ss_pred             hhh-hhHHHHHHHhcc-----chhccCCHHHHHHHHHHHHhhhHHHhhh---heeeccCCcceEEEeccCCccCeeEeec
Confidence            998 589999976543     2345799999999999999999999994   49999999999999877    9999999


Q ss_pred             CCCccc-----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhh----hHHHHH
Q 005680          485 LGLNIC-----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMAL----DQTTLM  531 (683)
Q Consensus       485 FGla~~-----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~----~~~~~~  531 (683)
                      ||+++.                             ..||++.||||+|||+.||+|-.|-|...+.....    ....+.
T Consensus       180 lGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g~E~k~~~~~Pfq~dQl~  259 (438)
T KOG0666|consen  180 LGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKGREEKIKTKNPFQHDQLD  259 (438)
T ss_pred             ccHHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCccccchhhhcccCCCchHHHHH
Confidence            999864                             46999999999999999999998877543221100    111111


Q ss_pred             H---Hhc-CCCCCCCh--------------------------------hhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          532 Q---VLD-GNAGIWPL--------------------------------DLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       532 ~---ild-~~~~~~p~--------------------------------~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .   ++- +....||.                                .-++...+|+.++|.+|  |-.|.|+.+.++.
T Consensus       260 rIf~vLG~Pt~~~Wp~lkk~Pe~q~~ls~f~~~~~~n~sL~~~~~~~k~k~~~a~~LL~klL~yD--P~kRIta~qAleh  337 (438)
T KOG0666|consen  260 RIFEVLGTPTDKDWPDLKKMPEYQTLLSDFRRHYYDNVSLHKYYHKHKVKDPSALDLLQKLLTYD--PIKRITAEQALEH  337 (438)
T ss_pred             HHHHHcCCCccccchhhhhCcchHHHHHHhHHhhcCcchHHHHHHHhcCCCchHHHHHHHHhccC--chhhccHHHHhcc
Confidence            1   111 11111211                                01234778999999999  8899998887765


Q ss_pred             H
Q 005680          576 L  576 (683)
Q Consensus       576 L  576 (683)
                      .
T Consensus       338 ~  338 (438)
T KOG0666|consen  338 P  338 (438)
T ss_pred             c
Confidence            3

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.95  E-value=2.2e-28  Score=269.94  Aligned_cols=205  Identities=19%  Similarity=0.266  Sum_probs=167.7

Q ss_pred             cccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEEeecCCCCchhhh
Q 005680          345 KCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVFEYMPNGNLRDKL  419 (683)
Q Consensus       345 iG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~~L  419 (683)
                      +|.|+|+.|-.+..  ++...++|++...  ..+..+|+.++... +||||+++.+.|.+  ..|+|||++.||-|.+.+
T Consensus       330 ~~~gs~s~~~~~~~~~t~~~~~vkii~~~--~~~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~e~l~g~ell~ri  407 (612)
T KOG0603|consen  330 LGEGSFSAVKYCESSPTDQEPAVKIISKR--ADDNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVMELLDGGELLRRI  407 (612)
T ss_pred             cCCCCccceeeeeccccccchhheecccc--ccccccccchhhhhcCCCcceeecceecCCceeeeeehhccccHHHHHH
Confidence            47899999999988  6889999999744  23456788777766 79999999999987  889999999999888887


Q ss_pred             hhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccc-cCCCcEEEecCCCccc--------
Q 005680          420 FTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL-DRNLVAKISGLGLNIC--------  490 (683)
Q Consensus       420 ~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILl-d~~~~~KL~DFGla~~--------  490 (683)
                      .          ...... ..+..|+.+|+.|+.|||.   ++||||||||+|||+ ++.++++|+|||.++.        
T Consensus       408 ~----------~~~~~~-~e~~~w~~~lv~Av~~LH~---~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~~~tp  473 (612)
T KOG0603|consen  408 R----------SKPEFC-SEASQWAAELVSAVDYLHE---QGVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERSCDTP  473 (612)
T ss_pred             H----------hcchhH-HHHHHHHHHHHHHHHHHHh---cCeeecCCChhheeecCCCCcEEEEEechhhhCchhhccc
Confidence            3          222233 6777899999999999999   779999999999999 6899999999998753        


Q ss_pred             --------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHh
Q 005680          491 --------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKC  556 (683)
Q Consensus       491 --------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~C  556 (683)
                                    ..|++++||||||++||+||+|+.||...+.     ...+...+  ..+.+...++...++|+.+|
T Consensus       474 ~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~-----~~ei~~~i--~~~~~s~~vS~~AKdLl~~L  546 (612)
T KOG0603|consen  474 ALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPA-----GIEIHTRI--QMPKFSECVSDEAKDLLQQL  546 (612)
T ss_pred             chhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCc-----hHHHHHhh--cCCccccccCHHHHHHHHHh
Confidence                          4689999999999999999999999965332     11122222  23344468899999999999


Q ss_pred             hhcCCCccccccHHHHHH
Q 005680          557 LSADQDANRDLRIAGVMK  574 (683)
Q Consensus       557 L~~dP~p~~RPs~~eVl~  574 (683)
                      |+.|  |..||++.++..
T Consensus       547 L~~d--P~~Rl~~~~i~~  562 (612)
T KOG0603|consen  547 LQVD--PALRLGADEIGA  562 (612)
T ss_pred             ccCC--hhhCcChhhhcc
Confidence            9999  889999988764

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.94  E-value=4.7e-27  Score=275.20  Aligned_cols=139  Identities=24%  Similarity=0.374  Sum_probs=120.5

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC-----CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV  406 (683)
                      ++|.. .+.+|.|+||.||+|.+  +++.||||+++...     ....+..|+.++..++||||+++++++.+  ..|||
T Consensus         4 ~~y~i-~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lV   82 (669)
T cd05610           4 EEFVI-VKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLV   82 (669)
T ss_pred             CCEEE-EEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEE
Confidence            34443 35678999999999998  48999999987321     13578899999999999999999988865  78999


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      |||++|++|.+++.          ....+++..++.|+.||+.||.|||.   .+||||||||+||||+.++.+||+|||
T Consensus        83 mEy~~g~~L~~li~----------~~~~l~~~~~~~i~~qil~aL~yLH~---~gIiHrDLKP~NILl~~~g~vkL~DFG  149 (669)
T cd05610          83 MEYLIGGDVKSLLH----------IYGYFDEEMAVKYISEVALALDYLHR---HGIIHRDLKPDNMLISNEGHIKLTDFG  149 (669)
T ss_pred             EeCCCCCCHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCccHHHEEEcCCCCEEEEeCC
Confidence            99999999999993          34568899999999999999999999   679999999999999999999999999


Q ss_pred             Cc
Q 005680          487 LN  488 (683)
Q Consensus       487 la  488 (683)
                      ++
T Consensus       150 ls  151 (669)
T cd05610         150 LS  151 (669)
T ss_pred             CC
Confidence            76

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.94  E-value=1.2e-27  Score=232.10  Aligned_cols=185  Identities=20%  Similarity=0.212  Sum_probs=150.5

Q ss_pred             ccccCCceEEEEEEE--CCeeEEEEEcC---CCCCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEEeecCCCCc
Q 005680          344 LKCAGDWTNVYRGRL--NHASVAIKTLN---NGLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVFEYMPNGNL  415 (683)
Q Consensus       344 liG~G~fG~Vykg~~--~g~~VAvK~l~---~~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL  415 (683)
                      -+|+|+||.|-+-++  +|...|+|.+.   +...+.+..+|+.+..+. .+|.+|.+||...+  ..+|.||.|. .||
T Consensus        53 elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwIcME~M~-tSl  131 (282)
T KOG0984|consen   53 ELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWICMELMD-TSL  131 (282)
T ss_pred             hhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEEeHHHhh-hhH
Confidence            357999998877666  89999999998   334456788899887665 79999999998765  7899999996 788


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-----
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-----  490 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-----  490 (683)
                      ..+....-      .....+++...-+|+..|+.||.|||+.  ..+||||+||+||||+.+|.+||||||++..     
T Consensus       132 dkfy~~v~------~~g~~ipE~vlGkIa~Svv~al~~L~~k--L~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dSi  203 (282)
T KOG0984|consen  132 DKFYRKVL------KKGGTIPEDVLGKIAVSVVHALEFLHSK--LSVIHRDVKPSNILINYDGQVKICDFGISGYLVDSI  203 (282)
T ss_pred             HHHHHHHH------hcCCcCchHHhhHhHHHHHHHHHHHHHH--hhhhhccCCcceEEEccCCcEEEcccccceeehhhh
Confidence            88765442      4677899999999999999999999984  5799999999999999999999999999743     


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCC
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIW  541 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~  541 (683)
                                             ..|+.+|||||||+++.||.+++.||..-    ...-..+.+++....+..
T Consensus       204 Akt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~w----~tpF~qLkqvVeep~P~L  273 (282)
T KOG0984|consen  204 AKTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYESW----GTPFQQLKQVVEEPSPQL  273 (282)
T ss_pred             HHHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhcccccccc----CCHHHHHHHHhcCCCCCC
Confidence                                   36899999999999999999999998631    122334555555444333

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.94  E-value=1.2e-27  Score=256.37  Aligned_cols=209  Identities=20%  Similarity=0.296  Sum_probs=171.6

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcC----CCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLN----NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~----~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      +++|+|-||+||-|..  +|+.||||++.    +......+++|+.||..++||.||.+-..|+.  ..++|||-+.|.-
T Consensus       570 evLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~GDM  649 (888)
T KOG4236|consen  570 EVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLHGDM  649 (888)
T ss_pred             hhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhcchH
Confidence            5789999999999988  79999999997    34455789999999999999999999998865  7899999997655


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC---CcEEEecCCCccc-
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN---LVAKISGLGLNIC-  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~---~~~KL~DFGla~~-  490 (683)
                      |+-+|.         ...+.|++.....++.||+.||.|||.   ++|+|+||||+||||.+.   -.+||||||+|+. 
T Consensus       650 LEMILS---------sEkgRL~er~TkFlvtQIL~ALr~LH~---knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiI  717 (888)
T KOG4236|consen  650 LEMILS---------SEKGRLPERITKFLVTQILVALRYLHF---KNIVHCDLKPENVLLASASPFPQVKLCDFGFARII  717 (888)
T ss_pred             HHHHHH---------hhcccchHHHHHHHHHHHHHHHHHhhh---cceeeccCCchheeeccCCCCCceeeccccceeec
Confidence            555553         345779999999999999999999999   889999999999999654   4799999999975 


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCC----h
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWP----L  543 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p----~  543 (683)
                                             ..|+..-|+||.|||+|--++|..||...++        +.+.+.....-+|    .
T Consensus       718 gEksFRrsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEdEd--------IndQIQNAaFMyPp~PW~  789 (888)
T KOG4236|consen  718 GEKSFRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDED--------INDQIQNAAFMYPPNPWS  789 (888)
T ss_pred             chhhhhhhhcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCccc--------hhHHhhccccccCCCchh
Confidence                                   4688899999999999999999999975332        1122222111122    3


Q ss_pred             hhHHHHHHHHHHhhhcCCCccccccHHHHH
Q 005680          544 DLAEELAGIALKCLSADQDANRDLRIAGVM  573 (683)
Q Consensus       544 ~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl  573 (683)
                      ++++...+||..+|+..  =++|-|....+
T Consensus       790 eis~~AidlIn~LLqVk--m~kRysvdk~l  817 (888)
T KOG4236|consen  790 EISPEAIDLINNLLQVK--MRKRYSVDKSL  817 (888)
T ss_pred             hcCHHHHHHHHHHHHHH--HHHhcchHhhc
Confidence            68899999999999998  78888876654

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.94  E-value=5.1e-27  Score=265.34  Aligned_cols=225  Identities=19%  Similarity=0.312  Sum_probs=182.4

Q ss_pred             HHHhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC-CCHHHHHHHHHHHHhc-CCCCccceecccc------
Q 005680          331 IRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-LSEEDFQAKVSFLTAV-RHPHLVAVMGCCS------  400 (683)
Q Consensus       331 i~~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~------  400 (683)
                      +...++-|. ...++|.|.||.||++..  +|+.+|||++... ...+++..|.++|... .|||++.+||++.      
T Consensus        14 lpdp~d~~e-i~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~deEiE~eynil~~~~~hpnv~~fyg~~~k~~~~~   92 (953)
T KOG0587|consen   14 LPDPADIFE-IIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDEEEEIELEYNMLKKYSHHPNVATFYGAFIKKDPGN   92 (953)
T ss_pred             CCCCCCccE-EEEEEeeccceeEEEEeeeecCceeeeEeecCCccccHHHHHHHHHHHhccCCCCcceEEEEEEEecCCC
Confidence            334444443 345678999999999886  7899999999843 4457889999999988 6999999999982      


Q ss_pred             -cceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc
Q 005680          401 -ELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV  479 (683)
Q Consensus       401 -~~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~  479 (683)
                       +.+|||||||.|||..|++...        ....+.|..+..|+..++.||.+||.+   .++|||||-.|||++.++.
T Consensus        93 ~DqLWLVMEfC~gGSVTDLVKn~--------~g~rl~E~~IaYI~re~lrgl~HLH~n---kviHRDikG~NiLLT~e~~  161 (953)
T KOG0587|consen   93 GDQLWLVMEFCGGGSVTDLVKNT--------KGNRLKEEWIAYILREILRGLAHLHNN---KVIHRDIKGQNVLLTENAE  161 (953)
T ss_pred             CCeEEEEeeccCCccHHHHHhhh--------cccchhhHHHHHHHHHHHHHHHHHhhc---ceeeecccCceEEEeccCc
Confidence             3799999999999999999655        367899999999999999999999994   5999999999999999999


Q ss_pred             EEEecCCCccc------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHH
Q 005680          480 AKISGLGLNIC------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTT  529 (683)
Q Consensus       480 ~KL~DFGla~~------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~  529 (683)
                      +||+|||.+..                              ..|+..+|+||||++..||.-|.||+......     ..
T Consensus       162 VKLvDFGvSaQldsT~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~DmHPm-----ra  236 (953)
T KOG0587|consen  162 VKLVDFGVSAQLDSTVGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDMHPM-----RA  236 (953)
T ss_pred             EEEeeeeeeeeeecccccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCcchh-----hh
Confidence            99999998742                              35788999999999999999999998653321     11


Q ss_pred             HHHHhcC--CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          530 LMQVLDG--NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       530 ~~~ild~--~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +..+...  ....-|...+.++.++|..||.+|  -..||++.++++
T Consensus       237 LF~IpRNPPPkLkrp~kWs~~FndFIs~cL~Kd--~e~RP~~~~ll~  281 (953)
T KOG0587|consen  237 LFLIPRNPPPKLKRPKKWSKKFNDFISTCLVKD--YEQRPSTEELLK  281 (953)
T ss_pred             hccCCCCCCccccchhhHHHHHHHHHHHHHhhc--cccCcchhhhcc
Confidence            1111111  112235678899999999999999  789999988874

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.94  E-value=5.5e-27  Score=222.84  Aligned_cols=216  Identities=19%  Similarity=0.255  Sum_probs=165.3

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCC----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNN----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      ..+|+|.||+||+|+.  ++..||+|.++-    ..-+....+|+-+|+.++|.|||+++++...  ...||+|||. .+
T Consensus         8 ekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~cd-qd   86 (292)
T KOG0662|consen    8 EKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCD-QD   86 (292)
T ss_pred             HhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHHhh-HH
Confidence            4568999999999997  679999999882    2234678999999999999999999998744  7889999996 68


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |..+..         .-.+.++.+.+..++.|++.||.|+|+   .++.||||||.|.||+.+|..||+|||+++.    
T Consensus        87 lkkyfd---------slng~~d~~~~rsfmlqllrgl~fchs---hnvlhrdlkpqnllin~ngelkladfglarafgip  154 (292)
T KOG0662|consen   87 LKKYFD---------SLNGDLDPEIVRSFMLQLLRGLGFCHS---HNVLHRDLKPQNLLINRNGELKLADFGLARAFGIP  154 (292)
T ss_pred             HHHHHH---------hcCCcCCHHHHHHHHHHHHhhhhhhhh---hhhhhccCCcceEEeccCCcEEecccchhhhcCCc
Confidence            888874         345678999999999999999999999   6699999999999999999999999999864    


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCC---------
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNA---------  538 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~---------  538 (683)
                                            .-|++..|+||-|||+.|+.. |+|.|...+-. ..-...+..+-.+..         
T Consensus       155 vrcysaevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvd-dqlkrif~~lg~p~ed~wps~t~l  233 (292)
T KOG0662|consen  155 VRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVD-DQLKRIFRLLGTPTEDQWPSMTKL  233 (292)
T ss_pred             eEeeeceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHH-HHHHHHHHHhCCCccccCCccccC
Confidence                                  247889999999999999988 77766532110 000111111111111         


Q ss_pred             ------CCCCh---------hhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          539 ------GIWPL---------DLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       539 ------~~~p~---------~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                            +.+|.         .....-++|+.+.|..+  |..|.++...++
T Consensus       234 pdyk~yp~ypattswsqivp~lns~grdllqkll~cn--p~qrisaeaalq  282 (292)
T KOG0662|consen  234 PDYKPYPIYPATTSWSQIVPKLNSTGRDLLQKLLKCN--PAQRISAEAALQ  282 (292)
T ss_pred             CCCcccCCccccchHHHHhhhhcchhHHHHHHHhccC--cccccCHHHHhc
Confidence                  11111         22334578888888889  779999776653

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=1.8e-27  Score=254.79  Aligned_cols=204  Identities=19%  Similarity=0.243  Sum_probs=175.9

Q ss_pred             cccCCceEEEEEEECCee--EEEEEcC-----CCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCc
Q 005680          345 KCAGDWTNVYRGRLNHAS--VAIKTLN-----NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNL  415 (683)
Q Consensus       345 iG~G~fG~Vykg~~~g~~--VAvK~l~-----~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL  415 (683)
                      +|-||||.|-++..++..  +|+|+++     .....+.+..|-.||..++.|.||++|-.|.+  ..|++||-|-||.|
T Consensus       428 LGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmLmEaClGGEl  507 (732)
T KOG0614|consen  428 LGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYMLMEACLGGEL  507 (732)
T ss_pred             cccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhhhHHhhcCchh
Confidence            477899999999986544  8999887     33455778899999999999999999999987  78899999999999


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-----
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-----  490 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-----  490 (683)
                      ...|          ..++.++...+..|+..++.|+.|||+   ++||.|||||+|.|||.+|-+||.|||+|+.     
T Consensus       508 WTiL----------rdRg~Fdd~tarF~~acv~EAfeYLH~---k~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g~  574 (732)
T KOG0614|consen  508 WTIL----------RDRGSFDDYTARFYVACVLEAFEYLHR---KGIIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSGR  574 (732)
T ss_pred             hhhh----------hhcCCcccchhhhhHHHHHHHHHHHHh---cCceeccCChhheeeccCCceEEeehhhHHHhccCC
Confidence            9999          466789999999999999999999999   7899999999999999999999999999964     


Q ss_pred             -------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC-CCCCCChhhHHHHH
Q 005680          491 -------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG-NAGIWPLDLAEELA  550 (683)
Q Consensus       491 -------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~-~~~~~p~~~~~~l~  550 (683)
                                         ...+.++|.||||+++|||+||.|||..++.     -.++..++.+ ....||..++....
T Consensus       575 KTwTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~dp-----mktYn~ILkGid~i~~Pr~I~k~a~  649 (732)
T KOG0614|consen  575 KTWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVDP-----MKTYNLILKGIDKIEFPRRITKTAT  649 (732)
T ss_pred             ceeeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCch-----HHHHHHHHhhhhhhhcccccchhHH
Confidence                               2457889999999999999999999987543     2333445554 34568888999999


Q ss_pred             HHHHHhhhcCCCcccccc
Q 005680          551 GIALKCLSADQDANRDLR  568 (683)
Q Consensus       551 ~Li~~CL~~dP~p~~RPs  568 (683)
                      +||++++..+  |.+|..
T Consensus       650 ~Lik~LCr~~--P~ERLG  665 (732)
T KOG0614|consen  650 DLIKKLCRDN--PTERLG  665 (732)
T ss_pred             HHHHHHHhcC--cHhhhc
Confidence            9999999999  778875

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.94  E-value=1.1e-26  Score=266.61  Aligned_cols=234  Identities=15%  Similarity=0.116  Sum_probs=148.5

Q ss_pred             hhcCccccccccccCCceEEEEEEE--C----CeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccc--------
Q 005680          334 ATEDFSERFRLKCAGDWTNVYRGRL--N----HASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCC--------  399 (683)
Q Consensus       334 at~~F~~~~~liG~G~fG~Vykg~~--~----g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~--------  399 (683)
                      ..++|... +.+|+|+||.||+|.+  +    +..||||++......+.+..+  .+....+.+++.++..+        
T Consensus       130 ~~~~y~l~-~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~~e~~~~e--~l~~~~~~~~~~~~~~~~~~~~~~~  206 (566)
T PLN03225        130 KKDDFVLG-KKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGAVEIWMNE--RVRRACPNSCADFVYGFLEPVSSKK  206 (566)
T ss_pred             ccCCeEEe-EEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccchhHHHHHH--HHHhhchhhHHHHHHhhhccccccc
Confidence            45666554 5678999999999998  4    689999998643322222222  12222233333332221        


Q ss_pred             ccceeEEEeecCCCCchhhhhhcccccc----------cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCC
Q 005680          400 SELKCIVFEYMPNGNLRDKLFTSQRNYK----------NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTP  469 (683)
Q Consensus       400 ~~~~~LV~Ey~~ggsL~~~L~~~~~~~~----------~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP  469 (683)
                      ....+|||||+++++|.+++......+.          ............+..|+.||+.||.|||+   .+|+||||||
T Consensus       207 ~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~---~gIiHRDLKP  283 (566)
T PLN03225        207 EDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHS---TGIVHRDVKP  283 (566)
T ss_pred             CCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHH---CCEEeCcCCH
Confidence            2268999999999999999864311000          00011112344566899999999999999   6799999999


Q ss_pred             CcccccC-CCcEEEecCCCcccc------------------------------------------------CCCcccccc
Q 005680          470 SSILLDR-NLVAKISGLGLNICD------------------------------------------------QLNVRSDIR  500 (683)
Q Consensus       470 ~NILld~-~~~~KL~DFGla~~~------------------------------------------------~~t~ksDVw  500 (683)
                      +|||++. ++.+||+|||+|+.-                                                .++.++|||
T Consensus       284 ~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DVw  363 (566)
T PLN03225        284 QNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIY  363 (566)
T ss_pred             HHEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCcccH
Confidence            9999985 689999999998520                                                122356999


Q ss_pred             cHHHHHHHHhhCCCCchhhHHHh-------hhhHHHHHHHhcCCC-CC------CChhhHHHHHHHHHHhhhcCCCcccc
Q 005680          501 AFGTLLLHLLTGRNWAGLVEKAM-------ALDQTTLMQVLDGNA-GI------WPLDLAEELAGIALKCLSADQDANRD  566 (683)
Q Consensus       501 SlGviL~eLltG~~Pf~~~~~~~-------~~~~~~~~~ild~~~-~~------~p~~~~~~l~~Li~~CL~~dP~p~~R  566 (683)
                      ||||+||||+++..|++......       ..+...+...+.... ..      ..........+|+.+||+.|  |++|
T Consensus       364 SlGviL~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~dLi~~mL~~d--P~kR  441 (566)
T PLN03225        364 SAGLIFLQMAFPNLRSDSNLIQFNRQLKRNDYDLVAWRKLVEPRASPDLRRGFEVLDLDGGAGWELLKSMMRFK--GRQR  441 (566)
T ss_pred             HHHHHHHHHHhCcCCCchHHHHHHHHHHhcCCcHHHHHHhhccccchhhhhhhhhccccchHHHHHHHHHccCC--cccC
Confidence            99999999999876654211100       000011111111110 00      00011234568999999999  8899


Q ss_pred             ccHHHHHHH
Q 005680          567 LRIAGVMKE  575 (683)
Q Consensus       567 Ps~~eVl~~  575 (683)
                      ||+.++++.
T Consensus       442 ~ta~e~L~H  450 (566)
T PLN03225        442 ISAKAALAH  450 (566)
T ss_pred             CCHHHHhCC
Confidence            999998763

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.3e-27  Score=237.50  Aligned_cols=219  Identities=17%  Similarity=0.271  Sum_probs=169.8

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcC----CCCCHHHHHHHHHHHHhcCCCCccceeccccc----------cee
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLN----NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE----------LKC  404 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~----~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----------~~~  404 (683)
                      ....+|+|.||.||+++.  +|+.||+|++-    ...-.....+|+.+|..++|+|++.++..|..          .+|
T Consensus        21 k~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r~t~y  100 (376)
T KOG0669|consen   21 KLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDRATFY  100 (376)
T ss_pred             HHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccccceee
Confidence            345678999999999987  57889998764    22334567899999999999999999999843          479


Q ss_pred             EEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEec
Q 005680          405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISG  484 (683)
Q Consensus       405 LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~D  484 (683)
                      |||.+|+ .+|.-+|.         .....++...+.+++.++..||.|+|.   ..|+|||+||.|+||+.+|.+||+|
T Consensus       101 lVf~~ce-hDLaGlLs---------n~~vr~sls~Ikk~Mk~Lm~GL~~iHr---~kilHRDmKaaNvLIt~dgilklAD  167 (376)
T KOG0669|consen  101 LVFDFCE-HDLAGLLS---------NRKVRFSLSEIKKVMKGLMNGLYYIHR---NKILHRDMKAANVLITKDGILKLAD  167 (376)
T ss_pred             eeHHHhh-hhHHHHhc---------CccccccHHHHHHHHHHHHHHHHHHHH---hhHHhhcccHhhEEEcCCceEEeec
Confidence            9999998 58988884         334678999999999999999999999   4599999999999999999999999


Q ss_pred             CCCccc------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhh---------
Q 005680          485 LGLNIC------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMAL---------  525 (683)
Q Consensus       485 FGla~~------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~---------  525 (683)
                      ||+++.                              ..|+++.|||.-|||+.||+||.|-+.........         
T Consensus       168 FGlar~fs~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~LcGs  247 (376)
T KOG0669|consen  168 FGLARAFSTSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQLCGS  247 (376)
T ss_pred             cccccceecccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCChHHHHHHHHHHHhcc
Confidence            999853                              35889999999999999999999887542221000         


Q ss_pred             ---------hHHHHHHHhcCCCCCCCh-------------hhHHHHHHHHHHhhhcCCCccccccHHHHHHHH
Q 005680          526 ---------DQTTLMQVLDGNAGIWPL-------------DLAEELAGIALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       526 ---------~~~~~~~ild~~~~~~p~-------------~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                               +.-.+...+.  ..+.|.             .-.++..+|+..+|..|  |.+|+++++++..-
T Consensus       248 ~tkevWP~~d~lpL~~sie--~ePl~~~~~rkv~n~~kp~~kd~~a~dLle~ll~~D--P~kR~~ad~alnh~  316 (376)
T KOG0669|consen  248 ITKEVWPNVDNLPLYQSIE--LEPLPKGQKRKVKNRLKPYVKDDEALDLLEKLLKLD--PTKRIDADQALNHD  316 (376)
T ss_pred             CCcccCCCcccchHHHhcc--CCCCCcchhhhhhhhcccccCChhHHHHHHHHhccC--cccCcchHhhhchh
Confidence                     0000111110  000110             11246789999999999  78999999988654

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=1.2e-26  Score=237.78  Aligned_cols=217  Identities=24%  Similarity=0.347  Sum_probs=181.2

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcC-----CCCCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN-----NGLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCI  405 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~-----~~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~L  405 (683)
                      ++|.- ++++|+|+|++|..+++  +.+.+|+|+++     .+.+.+-.+.|-.+.... +||.+|-+..+|+.  .+++
T Consensus       250 ~df~l-l~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlff  328 (593)
T KOG0695|consen  250 QDFDL-LRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLFF  328 (593)
T ss_pred             cccee-eeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEEE
Confidence            45543 57889999999999998  67899999987     334456677888888776 79999999999976  7899


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecC
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGL  485 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DF  485 (683)
                      |.||++||+|.-++          .....|+++.+..+..+|+.||.|||+   +|||.||||.+|||||..|++||+||
T Consensus       329 vieyv~ggdlmfhm----------qrqrklpeeharfys~ei~lal~flh~---rgiiyrdlkldnvlldaeghikltdy  395 (593)
T KOG0695|consen  329 VIEYVNGGDLMFHM----------QRQRKLPEEHARFYSAEICLALNFLHE---RGIIYRDLKLDNVLLDAEGHIKLTDY  395 (593)
T ss_pred             EEEEecCcceeeeh----------hhhhcCcHHHhhhhhHHHHHHHHHHhh---cCeeeeeccccceEEccCCceeeccc
Confidence            99999999998887          567789999999999999999999999   88999999999999999999999999


Q ss_pred             CCccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHH--HhhhhHHHHHHHhcCCC
Q 005680          486 GLNIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEK--AMALDQTTLMQVLDGNA  538 (683)
Q Consensus       486 Gla~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~--~~~~~~~~~~~ild~~~  538 (683)
                      |+++.                         ..|+..+|+|+|||+++||+.|+.||+.+..  ........+.+++-...
T Consensus       396 gmcke~l~~gd~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~d~ntedylfqvilekq  475 (593)
T KOG0695|consen  396 GMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPDMNTEDYLFQVILEKQ  475 (593)
T ss_pred             chhhcCCCCCcccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcceecCCCcccchhHHHHHHHhhhc
Confidence            99854                         4688999999999999999999999987542  11122344555555555


Q ss_pred             CCCChhhHHHHHHHHHHhhhcCCCcccccc
Q 005680          539 GIWPLDLAEELAGIALKCLSADQDANRDLR  568 (683)
Q Consensus       539 ~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs  568 (683)
                      ...|..++-....++...|++|  |..|..
T Consensus       476 iriprslsvkas~vlkgflnkd--p~erlg  503 (593)
T KOG0695|consen  476 IRIPRSLSVKASHVLKGFLNKD--PKERLG  503 (593)
T ss_pred             ccccceeehhhHHHHHHhhcCC--cHHhcC
Confidence            6677788888999999999999  667653

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.93  E-value=9.1e-26  Score=254.16  Aligned_cols=238  Identities=15%  Similarity=0.177  Sum_probs=164.8

Q ss_pred             hhcCccccccccccCCceEEEEEEE------------------CCeeEEEEEcCCCC--CHH--------------HHHH
Q 005680          334 ATEDFSERFRLKCAGDWTNVYRGRL------------------NHASVAIKTLNNGL--SEE--------------DFQA  379 (683)
Q Consensus       334 at~~F~~~~~liG~G~fG~Vykg~~------------------~g~~VAvK~l~~~~--~~~--------------~~~~  379 (683)
                      ..++|... +++|+|+||.||+|.+                  .++.||||++....  ...              ....
T Consensus       143 ~~d~F~i~-~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~v  221 (507)
T PLN03224        143 SSDDFQLR-DKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMV  221 (507)
T ss_pred             cccCceEe-eEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHH
Confidence            46678776 4557899999999964                  24679999986321  112              2345


Q ss_pred             HHHHHHhcCCCCc-----cceeccccc----------ceeEEEeecCCCCchhhhhhcccccc--------------ccc
Q 005680          380 KVSFLTAVRHPHL-----VAVMGCCSE----------LKCIVFEYMPNGNLRDKLFTSQRNYK--------------NCS  430 (683)
Q Consensus       380 Ev~iL~~l~HpnI-----V~l~g~~~~----------~~~LV~Ey~~ggsL~~~L~~~~~~~~--------------~~~  430 (683)
                      |+.++.+++|.++     +.++|+|..          ..+|||||+++|+|.++|........              ...
T Consensus       222 E~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~  301 (507)
T PLN03224        222 EAYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNM  301 (507)
T ss_pred             HHHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhc
Confidence            7777788876654     677777632          57999999999999999964321100              001


Q ss_pred             ccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-----------c--------
Q 005680          431 RARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-----------D--------  491 (683)
Q Consensus       431 ~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-----------~--------  491 (683)
                      ....+++..+..|+.|++.||.|||+   .+|+||||||+|||++.++.+||+|||++..           +        
T Consensus       302 ~~~~~~~~~~~~i~~ql~~aL~~lH~---~~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~a  378 (507)
T PLN03224        302 PQDKRDINVIKGVMRQVLTGLRKLHR---IGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSP  378 (507)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCCcceeC
Confidence            12346788999999999999999999   6799999999999999999999999998732           0        


Q ss_pred             --C-------------------------C--CcccccccHHHHHHHHhhCCC-CchhhHHHhh-h----hHHHHHHHhcC
Q 005680          492 --Q-------------------------L--NVRSDIRAFGTLLLHLLTGRN-WAGLVEKAMA-L----DQTTLMQVLDG  536 (683)
Q Consensus       492 --~-------------------------~--t~ksDVwSlGviL~eLltG~~-Pf~~~~~~~~-~----~~~~~~~ild~  536 (683)
                        .                         +  ..+.||||+|||+|+|++|.. ||........ .    ...........
T Consensus       379 PE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~r~~~~  458 (507)
T PLN03224        379 PEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRWRMYKG  458 (507)
T ss_pred             hhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHHHhhcc
Confidence              0                         0  124699999999999999874 6643211100 0    00000111111


Q ss_pred             CCCCC--ChhhHHHHHHHHHHhhhcCC-CccccccHHHHHHH
Q 005680          537 NAGIW--PLDLAEELAGIALKCLSADQ-DANRDLRIAGVMKE  575 (683)
Q Consensus       537 ~~~~~--p~~~~~~l~~Li~~CL~~dP-~p~~RPs~~eVl~~  575 (683)
                      ....+  ....++...+|+.++|..+| +|++|+|+.+++.+
T Consensus       459 ~~~~~~~~d~~s~~~~dLi~~LL~~~~~~~~~RlSa~eaL~H  500 (507)
T PLN03224        459 QKYDFSLLDRNKEAGWDLACKLITKRDQANRGRLSVGQALSH  500 (507)
T ss_pred             cCCCcccccccChHHHHHHHHHhccCCCCcccCCCHHHHhCC
Confidence            11122  23567889999999999863 35789999998753

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.93  E-value=7.8e-27  Score=262.79  Aligned_cols=226  Identities=26%  Similarity=0.298  Sum_probs=168.9

Q ss_pred             cCccccccccccCCce-EEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEEeecC
Q 005680          336 EDFSERFRLKCAGDWT-NVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG-~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      ..|....+++|.|+-| .||+|.+.|+.||||++-.. ......+||..|..- .|||||++|+.-.+  ..||..|.|.
T Consensus       508 k~~~~~~eilG~Gs~Gt~Vf~G~ye~R~VAVKrll~e-~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC~  586 (903)
T KOG1027|consen  508 KLFFSPKEILGYGSNGTVVFRGVYEGREVAVKRLLEE-FFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALELCA  586 (903)
T ss_pred             eeeeccHHHcccCCCCcEEEEEeeCCceehHHHHhhH-hHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehHhh
Confidence            4555556777777766 58999999999999998532 345678999999988 69999999998876  7899999996


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC---C--CcEEEecCC
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR---N--LVAKISGLG  486 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~---~--~~~KL~DFG  486 (683)
                       .+|.+++....      .......--..+.++.|++.||++||+   .+||||||||.||||+.   +  .+++|+|||
T Consensus       587 -~sL~dlie~~~------~d~~~~~~i~~~~~l~q~~~GlaHLHs---l~iVHRDLkPQNILI~~~~~~~~~ra~iSDfg  656 (903)
T KOG1027|consen  587 -CSLQDLIESSG------LDVEMQSDIDPISVLSQIASGLAHLHS---LKIVHRDLKPQNILISVPSADGTLRAKISDFG  656 (903)
T ss_pred             -hhHHHHHhccc------cchhhcccccHHHHHHHHHHHHHHHHh---cccccccCCCceEEEEccCCCcceeEEecccc
Confidence             79999996420      011111113456789999999999999   66999999999999975   2  579999999


Q ss_pred             Cccc----------------------------cCCCcccccccHHHHHHHHhhC-CCCchhhHHHhhhhHHHHHHHhcCC
Q 005680          487 LNIC----------------------------DQLNVRSDIRAFGTLLLHLLTG-RNWAGLVEKAMALDQTTLMQVLDGN  537 (683)
Q Consensus       487 la~~----------------------------~~~t~ksDVwSlGviL~eLltG-~~Pf~~~~~~~~~~~~~~~~ild~~  537 (683)
                      +|+.                            ..-+.++||||||||+|+.++| ..||+..-.       .-..++.+.
T Consensus       657 lsKkl~~~~sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~-------R~~NIl~~~  729 (903)
T KOG1027|consen  657 LSKKLAGGKSSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLE-------RQANILTGN  729 (903)
T ss_pred             cccccCCCcchhhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCchHH-------hhhhhhcCc
Confidence            9864                            1234578999999999999995 899985322       111222221


Q ss_pred             CC----CCChhhHHHHHHHHHHhhhcCCCccccccHHHHH---------HHHHHHHHhc
Q 005680          538 AG----IWPLDLAEELAGIALKCLSADQDANRDLRIAGVM---------KELDEVRKKA  583 (683)
Q Consensus       538 ~~----~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl---------~~L~~l~~~~  583 (683)
                      ..    ....++  +..+||.+|++++  |..||++.+|+         ++|.-+++..
T Consensus       730 ~~L~~L~~~~d~--eA~dLI~~ml~~d--P~~RPsa~~VL~HPlFW~~ekrL~Fl~dvS  784 (903)
T KOG1027|consen  730 YTLVHLEPLPDC--EAKDLISRMLNPD--PQLRPSATDVLNHPLFWDSEKRLSFLRDVS  784 (903)
T ss_pred             cceeeeccCchH--HHHHHHHHhcCCC--cccCCCHHHHhCCCccCChHHHHHHHHhhh
Confidence            11    011112  8999999999999  77999999998         4566665543

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.93  E-value=6.6e-26  Score=236.75  Aligned_cols=238  Identities=20%  Similarity=0.302  Sum_probs=193.7

Q ss_pred             HHHhhcCccccccccccCCceEEEEEEEC-------CeeEEEEEcCCCCCH---HHHHHHHHHHHhcCCCCccceecccc
Q 005680          331 IRLATEDFSERFRLKCAGDWTNVYRGRLN-------HASVAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCS  400 (683)
Q Consensus       331 i~~at~~F~~~~~liG~G~fG~Vykg~~~-------g~~VAvK~l~~~~~~---~~~~~Ev~iL~~l~HpnIV~l~g~~~  400 (683)
                      |....+.|... -++.+|.||.||.|.|.       .+.|-+|.++...++   ..+..|.-.|-.+.|||+..+.|++.
T Consensus       279 l~v~r~Rv~l~-~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V~i  357 (563)
T KOG1024|consen  279 LTVQRCRVRLS-CLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGVSI  357 (563)
T ss_pred             hhhhhhheech-hhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEEEe
Confidence            33333444332 35568999999999762       256888888744433   56788999999999999999999996


Q ss_pred             c---ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC
Q 005680          401 E---LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN  477 (683)
Q Consensus       401 ~---~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~  477 (683)
                      +   .++.+|.++.-|+|..+|...++..  ......++-.+...++.|++.|+.|||+   .+|||.||...|++||+.
T Consensus       358 e~~~~P~V~y~~~~~gNLK~FL~~Cr~~~--~~~aqtvtt~qlV~masQla~am~hlh~---~~ViHkDiAaRNCvIdd~  432 (563)
T KOG1024|consen  358 EDYATPFVLYPATGVGNLKSFLQICRGDD--PSYAQTVTTIQLVLMASQLAMAMEHLHN---HGVIHKDIAARNCVIDDQ  432 (563)
T ss_pred             eccCcceEEEeccCcchHHHHHHHhccCC--CccccchhHHHHHHHHHHHHHHHHHHHh---cCcccchhhhhcceehhh
Confidence            5   7889999999999999997433211  1455678888999999999999999999   669999999999999999


Q ss_pred             CcEEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHH
Q 005680          478 LVAKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTT  529 (683)
Q Consensus       478 ~~~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~  529 (683)
                      ..+||+|=.+++.                           ..|+.++|||||||+||||+| |+.|+...+.     ...
T Consensus       433 LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~PyaeIDP-----fEm  507 (563)
T KOG1024|consen  433 LQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEIDP-----FEM  507 (563)
T ss_pred             eeEEeccchhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccccCH-----HHH
Confidence            9999999988864                           468999999999999999999 8888865322     233


Q ss_pred             HHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHH
Q 005680          530 LMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRK  581 (683)
Q Consensus       530 ~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~  581 (683)
                      ...+.|+.+...|.+||+++..++.-||..+  |.+||++.++...|..+..
T Consensus       508 ~~ylkdGyRlaQP~NCPDeLf~vMacCWall--peeRPsf~Qlv~cLseF~~  557 (563)
T KOG1024|consen  508 EHYLKDGYRLAQPFNCPDELFTVMACCWALL--PEERPSFSQLVICLSEFHT  557 (563)
T ss_pred             HHHHhccceecCCCCCcHHHHHHHHHHHhcC--cccCCCHHHHHHHHHHHHH
Confidence            3456778888889999999999999999999  7899999999999988754

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.92  E-value=9.1e-25  Score=212.91  Aligned_cols=180  Identities=29%  Similarity=0.453  Sum_probs=159.3

Q ss_pred             cccCCceEEEEEEEC--CeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCchh
Q 005680          345 KCAGDWTNVYRGRLN--HASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRD  417 (683)
Q Consensus       345 iG~G~fG~Vykg~~~--g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~  417 (683)
                      +|.|++|.||++...  |..+++|++.....   ...+.+|+.++..+.|++|+++++++..  ..+++|||+++++|.+
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~   80 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKD   80 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHH
Confidence            468999999999995  89999999985543   3789999999999999999999999976  7899999999999999


Q ss_pred             hhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC-CCcEEEecCCCccc------
Q 005680          418 KLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR-NLVAKISGLGLNIC------  490 (683)
Q Consensus       418 ~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~-~~~~KL~DFGla~~------  490 (683)
                      ++...         ...+++..+..++.+++.+|.|||+   .+++|+||+|.||+++. ++.++|+|||.+..      
T Consensus        81 ~~~~~---------~~~~~~~~~~~~~~~l~~~l~~lh~---~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~  148 (215)
T cd00180          81 LLKEN---------EGKLSEDEILRILLQILEGLEYLHS---NGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKS  148 (215)
T ss_pred             HHHhc---------cCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcc
Confidence            98422         1468999999999999999999999   67999999999999999 89999999998752      


Q ss_pred             -------------------c-CCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHH
Q 005680          491 -------------------D-QLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELA  550 (683)
Q Consensus       491 -------------------~-~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~  550 (683)
                                         . .++.++|+|+||+++++|                                     ..+.
T Consensus       149 ~~~~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l-------------------------------------~~~~  191 (215)
T cd00180         149 LLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL-------------------------------------PELK  191 (215)
T ss_pred             hhhcccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH-------------------------------------HHHH
Confidence                               1 456789999999999999                                     5788


Q ss_pred             HHHHHhhhcCCCccccccHHHHHHH
Q 005680          551 GIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       551 ~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      +++..|+..+  |..||++.++++.
T Consensus       192 ~~l~~~l~~~--p~~R~~~~~l~~~  214 (215)
T cd00180         192 DLIRKMLQKD--PEKRPSAKEILEH  214 (215)
T ss_pred             HHHHHHhhCC--cccCcCHHHHhhC
Confidence            9999999999  7899999998764

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.92  E-value=1e-25  Score=221.38  Aligned_cols=220  Identities=19%  Similarity=0.315  Sum_probs=170.9

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcC-CCCccceeccccc----ceeEEEe
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVR-HPHLVAVMGCCSE----LKCIVFE  408 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~-HpnIV~l~g~~~~----~~~LV~E  408 (683)
                      ++|....+ +|+|-|+.||-|..  ++..++||+++ +...+.+.+|+.||..|. ||||++++++..+    .+.||+|
T Consensus        38 ddYeivrk-~GRGKYSEVFeg~~~~~~eK~ViKiLK-PVkkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLiFE  115 (338)
T KOG0668|consen   38 DDYEIVRK-VGRGKYSEVFEGINITNNEKCVIKILK-PVKKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLIFE  115 (338)
T ss_pred             chHHHHHH-HcCccHhhHhcccccCCCceEEEeeec-hHHHHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhHhh
Confidence            44444444 47999999999985  78899999995 444578999999999996 9999999999977    5789999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC-CcEEEecCCC
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN-LVAKISGLGL  487 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~-~~~KL~DFGl  487 (683)
                      |+.+.+...+.             +.|+..++..++.+++.||.|+|+   +||.|||+||.|++||.. -.++|+|+|+
T Consensus       116 ~v~n~Dfk~ly-------------~tl~d~dIryY~~elLkALdyCHS---~GImHRDVKPhNvmIdh~~rkLrlIDWGL  179 (338)
T KOG0668|consen  116 YVNNTDFKQLY-------------PTLTDYDIRYYIYELLKALDYCHS---MGIMHRDVKPHNVMIDHELRKLRLIDWGL  179 (338)
T ss_pred             hhccccHHHHh-------------hhhchhhHHHHHHHHHHHHhHHHh---cCcccccCCcceeeechhhceeeeeecch
Confidence            99998877655             467888899999999999999999   789999999999999975 4699999999


Q ss_pred             ccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHH--------HhhhhHHHH----
Q 005680          488 NIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEK--------AMALDQTTL----  530 (683)
Q Consensus       488 a~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~--------~~~~~~~~~----  530 (683)
                      |..                         ..|+..-|+|||||+|..|+..+.||....+        +.......+    
T Consensus       180 AEFYHp~~eYnVRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Yl  259 (338)
T KOG0668|consen  180 AEFYHPGKEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAYL  259 (338)
T ss_pred             HhhcCCCceeeeeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHHH
Confidence            854                         3477889999999999999999999842111        111111111    


Q ss_pred             -----------HHHhcC-CCCCCC--------hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          531 -----------MQVLDG-NAGIWP--------LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       531 -----------~~ild~-~~~~~p--------~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                                 ..++.. ....|.        .-++++..+|+.+.|.+|  ..+|||+.|.+..
T Consensus       260 ~KY~i~Ldp~~~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYD--HqeRlTakEam~H  322 (338)
T KOG0668|consen  260 NKYQIDLDPQFEDILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYD--HQERLTAKEAMAH  322 (338)
T ss_pred             HHHccCCChhHhhHhhccccccHHHhCCccccccCChHHHHHHHHHHhhc--cccccchHHHhcC
Confidence                       111111 111221        124588999999999999  8899999998753

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=5.2e-26  Score=228.02  Aligned_cols=161  Identities=21%  Similarity=0.301  Sum_probs=141.7

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCC----CCCHHHHHHHHHHHHhcCCCCccceeccccc-------ceeEEEee
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNN----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-------LKCIVFEY  409 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-------~~~LV~Ey  409 (683)
                      +-||-|+||+||.+++  +|+.||+|++..    -.+.+.+.+|+.+|.-++|.|++..++...-       ..|+|+|+
T Consensus        59 RPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV~TEL  138 (449)
T KOG0664|consen   59 RPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYVLTEL  138 (449)
T ss_pred             CcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            5678999999999998  799999999862    2245788999999999999999999887643       56889999


Q ss_pred             cCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCcc
Q 005680          410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNI  489 (683)
Q Consensus       410 ~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~  489 (683)
                      |. .+|..+|          -+...|+-+.+.-++.||+.||.|||+   -+|.||||||.|.|+++|..+||||||+++
T Consensus       139 mQ-SDLHKII----------VSPQ~Ls~DHvKVFlYQILRGLKYLHs---A~ILHRDIKPGNLLVNSNCvLKICDFGLAR  204 (449)
T KOG0664|consen  139 MQ-SDLHKII----------VSPQALTPDHVKVFVYQILRGLKYLHT---ANILHRDIKPGNLLVNSNCILKICDFGLAR  204 (449)
T ss_pred             HH-hhhhhee----------ccCCCCCcchhhhhHHHHHhhhHHHhh---cchhhccCCCccEEeccCceEEeccccccc
Confidence            96 6898888          577889999999999999999999999   569999999999999999999999999997


Q ss_pred             c---------------------------cCCCcccccccHHHHHHHHhhCCCCch
Q 005680          490 C---------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAG  517 (683)
Q Consensus       490 ~---------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~  517 (683)
                      .                           ..|+.++||||.|||+.||+..+-.|.
T Consensus       205 vee~d~~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQ  259 (449)
T KOG0664|consen  205 TWDQRDRLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQ  259 (449)
T ss_pred             ccchhhhhhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhh
Confidence            5                           368999999999999999998876553

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.92  E-value=9.3e-25  Score=219.32  Aligned_cols=223  Identities=18%  Similarity=0.240  Sum_probs=168.8

Q ss_pred             ccccccccCCceEEEEEEE--CCeeEEEEEcC-CCCCHHHHHHHHHHHHhc-CCCCccceeccc-cc--ceeEEEeecCC
Q 005680          340 ERFRLKCAGDWTNVYRGRL--NHASVAIKTLN-NGLSEEDFQAKVSFLTAV-RHPHLVAVMGCC-SE--LKCIVFEYMPN  412 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~-~~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~-~~--~~~LV~Ey~~g  412 (683)
                      ..++++|.|.||.+-++.+  ..+.+++|.++ +.....+|.+|..----| .|.||+.-|.+- +.  .+++++||+|.
T Consensus        27 ~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~qE~aP~  106 (378)
T KOG1345|consen   27 TINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQTTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFVQEFAPR  106 (378)
T ss_pred             hHHHHhcccceeeEEeeeccCCceEEEeeccCcchhhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEeeccCcc
Confidence            3457889999999999999  45889999998 445678899998655555 589999888654 33  66789999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccccc--CCCcEEEecCCCccc
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD--RNLVAKISGLGLNIC  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld--~~~~~KL~DFGla~~  490 (683)
                      |+|..-+           ....+.+....+++.|+++||.|+|+   +++||||||.+||||-  +..++||||||+++.
T Consensus       107 gdL~snv-----------~~~GigE~~~K~v~~ql~SAi~fMHs---knlVHRdlK~eNiLif~~df~rvKlcDFG~t~k  172 (378)
T KOG1345|consen  107 GDLRSNV-----------EAAGIGEANTKKVFAQLLSAIEFMHS---KNLVHRDLKAENILIFDADFYRVKLCDFGLTRK  172 (378)
T ss_pred             chhhhhc-----------CcccccHHHHHHHHHHHHHHHHHhhc---cchhhcccccceEEEecCCccEEEeeecccccc
Confidence            9999887           33568888899999999999999999   8899999999999992  345899999999854


Q ss_pred             ---------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCCh
Q 005680          491 ---------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPL  543 (683)
Q Consensus       491 ---------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~  543 (683)
                                                 -...+.+|||.||+|+|.++||++|+.. .+.....-..+........+..|.
T Consensus       173 ~g~tV~~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQk-a~~~d~~Y~~~~~w~~rk~~~~P~  251 (378)
T KOG1345|consen  173 VGTTVKYLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQK-ASIMDKPYWEWEQWLKRKNPALPK  251 (378)
T ss_pred             cCceehhhhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchh-hhccCchHHHHHHHhcccCccCch
Confidence                                       1246789999999999999999999873 221111222333444433333333


Q ss_pred             ---hhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          544 ---DLAEELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       544 ---~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                         ..++.+..+..+-|..+  +.+|-.+.++.++-..+
T Consensus       252 ~F~~fs~~a~r~Fkk~lt~~--~~drcki~~~kk~rk~~  288 (378)
T KOG1345|consen  252 KFNPFSEKALRLFKKSLTPR--FKDRCKIWTAKKMRKCL  288 (378)
T ss_pred             hhcccCHHHHHHHHHhcCCc--ccccchhHHHHHHHHHH
Confidence               35678888888899888  77775555555544433

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.91  E-value=1.4e-24  Score=227.29  Aligned_cols=220  Identities=19%  Similarity=0.224  Sum_probs=163.8

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcC-CCCCHHHHHHHHHHHHhcC-C-CC----ccceeccccc--ceeEEEee
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLN-NGLSEEDFQAKVSFLTAVR-H-PH----LVAVMGCCSE--LKCIVFEY  409 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~-~~~~~~~~~~Ev~iL~~l~-H-pn----IV~l~g~~~~--~~~LV~Ey  409 (683)
                      ...++|+|.||.|-.+.+  ++..||||+++ .....+..+-|+++|.+|. + |+    +|.+.++|.-  +.|||+|.
T Consensus        93 i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrghiCivfel  172 (415)
T KOG0671|consen   93 IVDLLGEGTFGKVVECWDRETKEHVALKIIKNVDKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGHICIVFEL  172 (415)
T ss_pred             hhhhhcCCcccceEEEeecCCCceehHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCceEEEEec
Confidence            345678999999999988  56899999998 3334456678999999993 2 22    5677777743  88999999


Q ss_pred             cCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC-------------
Q 005680          410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR-------------  476 (683)
Q Consensus       410 ~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~-------------  476 (683)
                      + |-|+.++|..+        ...+++...+..++.|++.++.|||+   .+++|-||||+|||+.+             
T Consensus       173 l-G~S~~dFlk~N--------~y~~fpi~~ir~m~~QL~~sv~fLh~---~kl~HTDLKPENILfvss~~~~~~~~k~~~  240 (415)
T KOG0671|consen  173 L-GLSTFDFLKEN--------NYIPFPIDHIRHMGYQLLESVAFLHD---LKLTHTDLKPENILFVSSEYFKTYNPKKKV  240 (415)
T ss_pred             c-ChhHHHHhccC--------CccccchHHHHHHHHHHHHHHHHHHh---cceeecCCChheEEEeccceEEEeccCCcc
Confidence            9 56999999543        56789999999999999999999999   66999999999999932             


Q ss_pred             -------CCcEEEecCCCccc----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHh--hh
Q 005680          477 -------NLVAKISGLGLNIC----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAM--AL  525 (683)
Q Consensus       477 -------~~~~KL~DFGla~~----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~--~~  525 (683)
                             +..++|+|||.|+.                      -+++..+||||+||||+|+.||...|...++..  .+
T Consensus       241 ~~~r~~ks~~I~vIDFGsAtf~~e~hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHen~EHLaM  320 (415)
T KOG0671|consen  241 CFIRPLKSTAIKVIDFGSATFDHEHHSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHENLEHLAM  320 (415)
T ss_pred             ceeccCCCcceEEEecCCcceeccCcceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCCcHHHHHH
Confidence                   24589999999975                      257899999999999999999998775322110  00


Q ss_pred             hH--------HH-----HHHHhcCCCCCCC-------------------------hhhHHHHHHHHHHhhhcCCCccccc
Q 005680          526 DQ--------TT-----LMQVLDGNAGIWP-------------------------LDLAEELAGIALKCLSADQDANRDL  567 (683)
Q Consensus       526 ~~--------~~-----~~~ild~~~~~~p-------------------------~~~~~~l~~Li~~CL~~dP~p~~RP  567 (683)
                      -+        ..     ...........||                         .....+|.+|+.++|.+|  |.+|+
T Consensus       321 MerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fD--P~~Ri  398 (415)
T KOG0671|consen  321 MERILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFD--PARRI  398 (415)
T ss_pred             HHHhhCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccC--ccccc
Confidence            00        00     0000000011111                         123346999999999999  88999


Q ss_pred             cHHHHHH
Q 005680          568 RIAGVMK  574 (683)
Q Consensus       568 s~~eVl~  574 (683)
                      |+.|++.
T Consensus       399 Tl~EAL~  405 (415)
T KOG0671|consen  399 TLREALS  405 (415)
T ss_pred             cHHHHhc
Confidence            9998875

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.90  E-value=6e-23  Score=204.63  Aligned_cols=163  Identities=28%  Similarity=0.402  Sum_probs=142.2

Q ss_pred             cccccCCceEEEEEEEC--CeeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCc
Q 005680          343 RLKCAGDWTNVYRGRLN--HASVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNL  415 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~--g~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL  415 (683)
                      ..+|.|++|.||+|...  +..||||.+....   ....+.+|+..+.+++|+|++++++++..  ..++++||+++++|
T Consensus         5 ~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L   84 (225)
T smart00221        5 KKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCEGGDL   84 (225)
T ss_pred             eEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccCCCCH
Confidence            45688999999999983  6999999997432   45788999999999999999999999864  78999999999999


Q ss_pred             hhhhhhccccccccccccc-CCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          416 RDKLFTSQRNYKNCSRARA-LRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~-L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      .+++..          ... +++..+..++.+++.+|.|||.   .+++|+||+|.||+++.++.++|+|||++..    
T Consensus        85 ~~~~~~----------~~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~  151 (225)
T smart00221       85 FDYLRK----------KGGKLSEEEARFYLRQILEALEYLHS---LGIVHRDLKPENILLGMDGLVKLADFGLARFIHRD  151 (225)
T ss_pred             HHHHHh----------cccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEeeCceeeEecCc
Confidence            999942          233 8999999999999999999999   6799999999999999999999999997642    


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchh
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGL  518 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~  518 (683)
                                             ..++.++||||||+++++|++|++||..
T Consensus       152 ~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      152 LAALLKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             ccccccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence                                   1234689999999999999999999964

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.89  E-value=3.6e-24  Score=236.04  Aligned_cols=220  Identities=21%  Similarity=0.265  Sum_probs=178.2

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcC--CCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEee
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN--NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEY  409 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~--~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey  409 (683)
                      ++|.-. ..+|+|+||.|||+++  .+...|+|+++  ...+...++.|+-+++..+|||||.++|.+..  ..||.|||
T Consensus        15 ddyell-qrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicMEy   93 (829)
T KOG0576|consen   15 DDYELL-QRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICMEY   93 (829)
T ss_pred             cchhhe-eeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEEEe
Confidence            444444 4457899999999998  68999999998  44455678899999999999999999999854  89999999


Q ss_pred             cCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCcc
Q 005680          410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNI  489 (683)
Q Consensus       410 ~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~  489 (683)
                      |.||+|.+..          ....+|++.++...+.+.+.||.|||+   ++-+|||||-.|||+++.|.+|++|||.+.
T Consensus        94 cgggslQdiy----------~~TgplselqiayvcRetl~gl~ylhs---~gk~hRdiKGanilltd~gDvklaDfgvsa  160 (829)
T KOG0576|consen   94 CGGGSLQDIY----------HVTGPLSELQIAYVCRETLQGLKYLHS---QGKIHRDIKGANILLTDEGDVKLADFGVSA  160 (829)
T ss_pred             cCCCccccee----------eecccchhHHHHHHHhhhhccchhhhc---CCcccccccccceeecccCceeecccCchh
Confidence            9999999988          466889999999999999999999999   778999999999999999999999999862


Q ss_pred             c----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHH--HHhcCCCC
Q 005680          490 C----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLM--QVLDGNAG  539 (683)
Q Consensus       490 ~----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~--~ild~~~~  539 (683)
                      .                            +.|...+|||++|+...|+---.+|......   +..-.+.  ...++...
T Consensus       161 qitati~KrksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplfdlhp---mr~l~LmTkS~~qpp~l  237 (829)
T KOG0576|consen  161 QITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFDLHP---MRALFLMTKSGFQPPTL  237 (829)
T ss_pred             hhhhhhhhhhcccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCcccccch---HHHHHHhhccCCCCCcc
Confidence            1                            5789999999999999999888877533221   1111111  11122222


Q ss_pred             CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          540 IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       540 ~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .-+...++.+.+|++.||-++  |.+||++..++.
T Consensus       238 kDk~kws~~fh~fvK~altkn--pKkRptaeklL~  270 (829)
T KOG0576|consen  238 KDKTKWSEFFHNFVKGALTKN--PKKRPTAEKLLQ  270 (829)
T ss_pred             cCCccchHHHHHHHHHHhcCC--CccCCChhhhee
Confidence            334457889999999999999  779999887653

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.88  E-value=4.7e-23  Score=211.56  Aligned_cols=213  Identities=19%  Similarity=0.250  Sum_probs=158.9

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCC----CCCHHHHHHHHHHHHhcCCCCccceeccccc--------ceeEEEe
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNN----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--------LKCIVFE  408 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--------~~~LV~E  408 (683)
                      +.+|.|.- .|-.+.+  .+++||+|++..    .....+..+|..++..+.|+||++++.+|.-        ..|+|||
T Consensus        23 ~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~y~v~e  101 (369)
T KOG0665|consen   23 KPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEVYLVME  101 (369)
T ss_pred             cccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhHHHHHH
Confidence            44566654 4555555  689999999862    2234677899999999999999999999832        6799999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCc
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN  488 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla  488 (683)
                      ||. ++|...+.            ..++-.....|+.|++.|+.|||+   .+|+||||||+||++..++.+||.|||+|
T Consensus       102 ~m~-~nl~~vi~------------~elDH~tis~i~yq~~~~ik~lhs---~~IihRdLkPsnivv~~~~~lKi~dfg~a  165 (369)
T KOG0665|consen  102 LMD-ANLCQVIL------------MELDHETISYILYQMLCGIKHLHS---AGIIHRDLKPSNIVVNSDCTLKILDFGLA  165 (369)
T ss_pred             hhh-hHHHHHHH------------HhcchHHHHHHHHHHHHHHHHHHh---cceeecccCcccceecchhheeeccchhh
Confidence            996 78988884            236677788999999999999999   66999999999999999999999999998


Q ss_pred             cc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHH----------HhhhhHHHHHHH-
Q 005680          489 IC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEK----------AMALDQTTLMQV-  533 (683)
Q Consensus       489 ~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~----------~~~~~~~~~~~i-  533 (683)
                      +.                        ..|.+.+||||+||++.||++|+-.|.....          ....+...+.++ 
T Consensus       166 r~e~~~~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~g~d~idQ~~ki~~~lgtpd~~F~~qL~  245 (369)
T KOG0665|consen  166 RTEDTDFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFPGKDHIDQWNKIIEQLGTPDPSFMKQLQ  245 (369)
T ss_pred             cccCcccccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEecCchHHHHHHHHHHHhcCCCHHHHHHhh
Confidence            64                        2478899999999999999999976642110          000001111110 


Q ss_pred             ------hcC-------------CCCCCC------hhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          534 ------LDG-------------NAGIWP------LDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       534 ------ld~-------------~~~~~p------~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                            +..             ....|+      ..-+..+.+++.+||..|  |..|.++.+++.
T Consensus       246 ~~~r~yv~~~~~y~~~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~--pe~Risv~daL~  309 (369)
T KOG0665|consen  246 PTVRNYVENRPQYQAISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLVID--PEKRISVDDALR  309 (369)
T ss_pred             HHHHHHhhcChHhhccchhhhCCcccccccccCCccchHHHHHHHHHhhccC--hhhcccHHHHhc
Confidence                  000             001111      123456899999999999  779999888865

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.88  E-value=5.4e-23  Score=221.14  Aligned_cols=164  Identities=23%  Similarity=0.299  Sum_probs=138.9

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCCC-CHHHHHHHHHHHHhcC------CCCccceeccccc--ceeEEEeecC
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-SEEDFQAKVSFLTAVR------HPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-~~~~~~~Ev~iL~~l~------HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      -..|.|-|++|-+|.+  .|..||||++.... -.+.=+.|++||.+|.      --|++.|+-.|..  ++|||+|-+.
T Consensus       438 ~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hknHLClVFE~Ls  517 (752)
T KOG0670|consen  438 GYTGKGVFSTVVRARDQARGQEVAIKIIRNNEVMHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKNHLCLVFEPLS  517 (752)
T ss_pred             eccccceeeeeeeccccCCCCeeEEEEeecchHHhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhcceeEEEehhhh
Confidence            3448999999999998  57899999998433 3355678999999994      3478888887754  8999999985


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC-CcEEEecCCCccc
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN-LVAKISGLGLNIC  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~-~~~KL~DFGla~~  490 (683)
                       .+|.++|...       .....|....+..|+.|+..||..|-.   .+|+|.||||+|||++.. ..+||||||.|..
T Consensus       518 -lNLRevLKKy-------G~nvGL~ikaVRsYaqQLflALklLK~---c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~  586 (752)
T KOG0670|consen  518 -LNLREVLKKY-------GRNVGLHIKAVRSYAQQLFLALKLLKK---CGVLHADIKPDNILVNESKNILKLCDFGSASF  586 (752)
T ss_pred             -chHHHHHHHh-------CcccceeehHHHHHHHHHHHHHHHHHh---cCeeecccCccceEeccCcceeeeccCccccc
Confidence             7999999765       456678999999999999999999999   559999999999999864 6799999998843


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCch
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAG  517 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~  517 (683)
                                             -.|+...|+||.||+||||.||+-.|.
T Consensus       587 ~~eneitPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFp  636 (752)
T KOG0670|consen  587 ASENEITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFP  636 (752)
T ss_pred             cccccccHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecC
Confidence                                   358899999999999999999997664

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.88  E-value=5.5e-23  Score=223.55  Aligned_cols=166  Identities=19%  Similarity=0.226  Sum_probs=142.4

Q ss_pred             cccccccccCCceEEEEEEE--CCeeEEEEEcCCCC----------CHHHHHHHHHHHHhcC---CCCccceeccccc--
Q 005680          339 SERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----------SEEDFQAKVSFLTAVR---HPHLVAVMGCCSE--  401 (683)
Q Consensus       339 ~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----------~~~~~~~Ev~iL~~l~---HpnIV~l~g~~~~--  401 (683)
                      +...+.+|.|+||.|+.|.+  +...|+||.+.+..          ....+-.|+.||..++   |+||++++++|++  
T Consensus       563 yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEddd  642 (772)
T KOG1152|consen  563 YTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFEDDD  642 (772)
T ss_pred             ceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeecCC
Confidence            34456779999999999999  56889999986321          1234667999999997   9999999999987  


Q ss_pred             ceeEEEeec-CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcE
Q 005680          402 LKCIVFEYM-PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVA  480 (683)
Q Consensus       402 ~~~LV~Ey~-~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~  480 (683)
                      .+||+||-. +|-+|.++|          ...+.+++..+..|+.||+.|+++||+   .+|||||||-+||.++.+|-+
T Consensus       643 ~yyl~te~hg~gIDLFd~I----------E~kp~m~E~eAk~IFkQV~agi~hlh~---~~ivhrdikdenvivd~~g~~  709 (772)
T KOG1152|consen  643 YYYLETEVHGEGIDLFDFI----------EFKPRMDEPEAKLIFKQVVAGIKHLHD---QGIVHRDIKDENVIVDSNGFV  709 (772)
T ss_pred             eeEEEecCCCCCcchhhhh----------hccCccchHHHHHHHHHHHhccccccc---cCceecccccccEEEecCCeE
Confidence            788999865 567999999          567889999999999999999999999   779999999999999999999


Q ss_pred             EEecCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCch
Q 005680          481 KISGLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAG  517 (683)
Q Consensus       481 KL~DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~  517 (683)
                      ||+|||.|..                        ...+..-|||++|++||.++....||.
T Consensus       710 klidfgsaa~~ksgpfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpyy  770 (772)
T KOG1152|consen  710 KLIDFGSAAYTKSGPFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYY  770 (772)
T ss_pred             EEeeccchhhhcCCCcceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCc
Confidence            9999998743                        123567899999999999999988874

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.86  E-value=3.8e-22  Score=238.50  Aligned_cols=167  Identities=16%  Similarity=0.175  Sum_probs=123.1

Q ss_pred             hcCC-CCccceeccc-------cc--ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhc
Q 005680          386 AVRH-PHLVAVMGCC-------SE--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLH  455 (683)
Q Consensus       386 ~l~H-pnIV~l~g~~-------~~--~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH  455 (683)
                      .++| +||+.++++|       .+  .+++++||+ +++|.++|.         .....+++..++.|+.||+.||.|||
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~---------~~~~~~~~~~~~~i~~qi~~al~~lH   97 (793)
T PLN00181         28 SLSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLD---------NPDRSVDAFECFHVFRQIVEIVNAAH   97 (793)
T ss_pred             hhhHHHHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHh---------cccccccHHHHHHHHHHHHHHHHHHH
Confidence            4555 6888888877       11  456778887 579999994         22356999999999999999999999


Q ss_pred             cCCCCcEEeccCCCCccccc-------------------CCCcEEEecCCCccc--------------------------
Q 005680          456 STEPRPIVHGSLTPSSILLD-------------------RNLVAKISGLGLNIC--------------------------  490 (683)
Q Consensus       456 ~~~~~~IiHrDLKP~NILld-------------------~~~~~KL~DFGla~~--------------------------  490 (683)
                      +   ++||||||||+||||+                   .++.+||+|||+++.                          
T Consensus        98 ~---~gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (793)
T PLN00181         98 S---QGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQIL  174 (793)
T ss_pred             h---CCeeeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccc
Confidence            9   7799999999999994                   356678888887641                          


Q ss_pred             ---------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHH
Q 005680          491 ---------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALK  555 (683)
Q Consensus       491 ---------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~  555 (683)
                                     ..|+.++|||||||+||||++|.+|+......       +..+.....+..+....+....++.+
T Consensus       175 ~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (793)
T PLN00181        175 AMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKSRT-------MSSLRHRVLPPQILLNWPKEASFCLW  247 (793)
T ss_pred             cCCCcceEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHHHH-------HHHHHHhhcChhhhhcCHHHHHHHHH
Confidence                           24688999999999999999999987532211       01111111111111123456788999


Q ss_pred             hhhcCCCccccccHHHHHH
Q 005680          556 CLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       556 CL~~dP~p~~RPs~~eVl~  574 (683)
                      ||+.+  |..||++.+++.
T Consensus       248 ~L~~~--P~~Rps~~eil~  264 (793)
T PLN00181        248 LLHPE--PSCRPSMSELLQ  264 (793)
T ss_pred             hCCCC--hhhCcChHHHhh
Confidence            99999  889999999975

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.85  E-value=4.8e-21  Score=205.53  Aligned_cols=121  Identities=27%  Similarity=0.381  Sum_probs=102.7

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC-CCHHHHHHHHHHHHhcC-----C---CCccceeccccc------ceeE
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG-LSEEDFQAKVSFLTAVR-----H---PHLVAVMGCCSE------LKCI  405 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-~~~~~~~~Ev~iL~~l~-----H---pnIV~l~g~~~~------~~~L  405 (683)
                      +.+|-|.|++||++.+  ..+.||+|+.+.. ...+....||.+|++++     |   .+||+|++.|..      +.|+
T Consensus        84 rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAqhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGpNG~HVCM  163 (590)
T KOG1290|consen   84 RKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGPNGQHVCM  163 (590)
T ss_pred             EeccccccceeEEEeeccCCeEEEEEEEehhhHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCCCCcEEEE
Confidence            4557899999999998  5789999999843 33466789999999983     3   369999999943      7899


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccc
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL  474 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILl  474 (683)
                      |+|++ |-+|..+|...        ....++...+..|+.||+.||.|||..+  +|||-||||+||||
T Consensus       164 VfEvL-GdnLLklI~~s--------~YrGlpl~~VK~I~~qvL~GLdYLH~ec--gIIHTDlKPENvLl  221 (590)
T KOG1290|consen  164 VFEVL-GDNLLKLIKYS--------NYRGLPLSCVKEICRQVLTGLDYLHREC--GIIHTDLKPENVLL  221 (590)
T ss_pred             Eehhh-hhHHHHHHHHh--------CCCCCcHHHHHHHHHHHHHHHHHHHHhc--CccccCCCcceeee
Confidence            99999 67898888543        5677999999999999999999999965  79999999999999

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.84  E-value=3.3e-21  Score=204.42  Aligned_cols=221  Identities=20%  Similarity=0.281  Sum_probs=169.9

Q ss_pred             cCccccccccccCCceEEEEEEE-----CCeeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL-----NHASVAIKTLNNGLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVF  407 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~-----~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~  407 (683)
                      +.|... ..+|.|+|++||++.+     ..+.||+|.+.....+..+..|+++|..+ .+.||+++.+++..  ...+|+
T Consensus        36 ~~~~~v-~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~v~ivl  114 (418)
T KOG1167|consen   36 NAYKVV-NKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSSPSRILNELEMLYRLGGSDNIIKLNGCFRNNDQVAIVL  114 (418)
T ss_pred             hhhhhh-ccccccchhhhhhhhHhhhccccceEeeeecccccCchHHHHHHHHHHHhccchhhhcchhhhccCCeeEEEe
Confidence            344444 3457999999999987     25789999999888889999999999999 59999999999854  899999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC-CCcEEEecCC
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR-NLVAKISGLG  486 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~-~~~~KL~DFG  486 (683)
                      ||++..+..+++.             .++...+..++..++.||.++|.   .|||||||||+|+|.+. .+.-.|+|||
T Consensus       115 p~~~H~~f~~l~~-------------~l~~~~i~~Yl~~ll~Al~~~h~---~GIvHRDiKpsNFL~n~~t~rg~LvDFg  178 (418)
T KOG1167|consen  115 PYFEHDRFRDLYR-------------SLSLAEIRWYLRNLLKALAHLHK---NGIVHRDIKPSNFLYNRRTQRGVLVDFG  178 (418)
T ss_pred             cccCccCHHHHHh-------------cCCHHHHHHHHHHHHHHhhhhhc---cCccccCCCccccccccccCCceEEech
Confidence            9999988888883             46788899999999999999999   67999999999999975 4788999999


Q ss_pred             Cccc----------------------------------------------------------------------cCCCcc
Q 005680          487 LNIC----------------------------------------------------------------------DQLNVR  496 (683)
Q Consensus       487 la~~----------------------------------------------------------------------~~~t~k  496 (683)
                      +|..                                                                      ...+++
T Consensus       179 LA~~~d~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~Qtta  258 (418)
T KOG1167|consen  179 LAQRYDGYQQTEHSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTA  258 (418)
T ss_pred             hHHHHHhhhhhhhhhhhhcccCCccccCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhhccCcCCc
Confidence            9841                                                                      124678


Q ss_pred             cccccHHHHHHHHhhCCCCchhhHH--------------------HhhhhH------H---HHHHHhc-----------C
Q 005680          497 SDIRAFGTLLLHLLTGRNWAGLVEK--------------------AMALDQ------T---TLMQVLD-----------G  536 (683)
Q Consensus       497 sDVwSlGviL~eLltG~~Pf~~~~~--------------------~~~~~~------~---~~~~ild-----------~  536 (683)
                      +||||.|||++-+++++.||....+                    +.....      .   .+.....           .
T Consensus       259 iDiws~GVI~Lslls~~~PFf~a~dd~~al~ei~tifG~~~mrk~A~l~g~~~l~~ksn~~~~~e~~~~f~s~~~~~~~~  338 (418)
T KOG1167|consen  259 IDIWSAGVILLSLLSRRYPFFKAKDDADALAEIATIFGSAEMRKCAALPGRILLWQKSNIPTIPELRVNFETLHIESIYK  338 (418)
T ss_pred             cceeeccceeehhhccccccccCccccchHHHHHHHhChHHHHHHhhcCCceeeeccccccccHHHHhchhccChhhccc
Confidence            9999999999999999999842110                    000000      0   0000000           0


Q ss_pred             ------CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          537 ------NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       537 ------~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                            ....+....+..+.+|+.+||+.|  |.+|.|+++.|+.
T Consensus       339 ~~q~n~~~~~~~d~~~~~~~dlLdk~le~n--p~kRitAEeALkH  381 (418)
T KOG1167|consen  339 SRQPNTEREIGSDVFPALLLDLLDKCLELN--PQKRITAEDALKH  381 (418)
T ss_pred             ccccceeeccccccccHHHHHHHHHHccCC--hhhcccHHHHhcC
Confidence                  001112234558999999999999  8899999998753

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.83  E-value=2.2e-20  Score=181.24  Aligned_cols=143  Identities=18%  Similarity=0.126  Sum_probs=110.0

Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |||.+++..         ....+++..++.|+.||+.||.|||+   .+      ||+|||++.++.+|+  ||++..  
T Consensus         1 GsL~~~l~~---------~~~~l~~~~~~~i~~qi~~~L~~lH~---~~------kp~Nil~~~~~~~~~--fG~~~~~~   60 (176)
T smart00750        1 VSLADILEV---------RGRPLNEEEIWAVCLQCLRALRELHR---QA------KSGNILLTWDGLLKL--DGSVAFKT   60 (176)
T ss_pred             CcHHHHHHH---------hCCCCCHHHHHHHHHHHHHHHHHHHh---cC------CcccEeEcCccceee--ccceEeec
Confidence            789999842         24569999999999999999999999   44      999999999999999  998753  


Q ss_pred             ------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCC------CCCChhhH
Q 005680          491 ------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNA------GIWPLDLA  546 (683)
Q Consensus       491 ------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~------~~~p~~~~  546 (683)
                                        ..++.++|||||||++|||+||++||......    ...+..++....      ...+..++
T Consensus        61 ~~~~~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (176)
T smart00750       61 PEQSRVDPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEEREL----SAILEILLNGMPADDPRDRSNLESVS  136 (176)
T ss_pred             cccCCCcccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchh----cHHHHHHHHHhccCCccccccHHHHH
Confidence                              35788999999999999999999998643221    111111111111      11223344


Q ss_pred             H--HHHHHHHHhhhcCCCccccccHHHHHHHHHHHHH
Q 005680          547 E--ELAGIALKCLSADQDANRDLRIAGVMKELDEVRK  581 (683)
Q Consensus       547 ~--~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~  581 (683)
                      .  .+.+++.+||..+  |..||++.+++..+..+..
T Consensus       137 ~~~~~~~~i~~cl~~~--p~~Rp~~~~ll~~~~~~~~  171 (176)
T smart00750      137 AARSFADFMRVCASRL--PQRREAANHYLAHCRALFA  171 (176)
T ss_pred             hhhhHHHHHHHHHhcc--cccccCHHHHHHHHHHHHH
Confidence            4  6999999999999  8899999999999877653

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.83  E-value=1.1e-20  Score=187.84  Aligned_cols=134  Identities=16%  Similarity=0.171  Sum_probs=106.1

Q ss_pred             cccccCCceEEEEEEE-CCeeEEEEEcCCCC----C-------HHHH-----------------HHHHHHHHhcCCCCcc
Q 005680          343 RLKCAGDWTNVYRGRL-NHASVAIKTLNNGL----S-------EEDF-----------------QAKVSFLTAVRHPHLV  393 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~-~g~~VAvK~l~~~~----~-------~~~~-----------------~~Ev~iL~~l~HpnIV  393 (683)
                      ..+|.|+||.||+|.. +|++||||+++...    .       ...|                 ..|+.++.++.++++.
T Consensus         3 ~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v~   82 (190)
T cd05147           3 GCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGIP   82 (190)
T ss_pred             CccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            4678999999999998 69999999997321    1       0122                 3499999999888774


Q ss_pred             ceecccccceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhh-ccCCCCcEEeccCCCCcc
Q 005680          394 AVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFL-HSTEPRPIVHGSLTPSSI  472 (683)
Q Consensus       394 ~l~g~~~~~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yL-H~~~~~~IiHrDLKP~NI  472 (683)
                      ....+.....+|||||++|++|...+.          ....++...+..++.|++.+|.|| |+   .+|+||||||+||
T Consensus        83 ~p~~~~~~~~~iVmE~i~g~~l~~~~~----------~~~~~~~~~~~~i~~qi~~~L~~l~H~---~giiHrDlkP~NI  149 (190)
T cd05147          83 CPEPILLKSHVLVMEFIGDDGWAAPRL----------KDAPLSESKARELYLQVIQIMRILYQD---CRLVHADLSEYNL  149 (190)
T ss_pred             CCcEEEecCCEEEEEEeCCCCCcchhh----------hcCCCCHHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHE
Confidence            433333334589999999887765541          235688999999999999999999 67   5799999999999


Q ss_pred             cccCCCcEEEecCCCccc
Q 005680          473 LLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       473 Lld~~~~~KL~DFGla~~  490 (683)
                      |++ ++.++|+|||+|..
T Consensus       150 li~-~~~v~LiDFG~a~~  166 (190)
T cd05147         150 LYH-DGKLYIIDVSQSVE  166 (190)
T ss_pred             EEE-CCcEEEEEcccccc
Confidence            998 57899999999864

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.81  E-value=8e-20  Score=198.25  Aligned_cols=135  Identities=17%  Similarity=0.144  Sum_probs=107.2

Q ss_pred             HhhcCccccccccccCCceEEEEEEE---CCeeEEEEEcCCC-------CCHHHHHHHHHHHHhcCCCCccc-eeccccc
Q 005680          333 LATEDFSERFRLKCAGDWTNVYRGRL---NHASVAIKTLNNG-------LSEEDFQAKVSFLTAVRHPHLVA-VMGCCSE  401 (683)
Q Consensus       333 ~at~~F~~~~~liG~G~fG~Vykg~~---~g~~VAvK~l~~~-------~~~~~~~~Ev~iL~~l~HpnIV~-l~g~~~~  401 (683)
                      ...++|... ..+|+|+||+||+|.+   ++..||||++...       .....|.+|+.+|.+++|+|+|. ++++  .
T Consensus        15 ~~~~~Y~~~-~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~--~   91 (365)
T PRK09188         15 ALSARFVET-AVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLAT--G   91 (365)
T ss_pred             cccCCceEc-cEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEc--C
Confidence            344556554 5678999999999987   4677899987522       12356899999999999999995 4443  4


Q ss_pred             ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccC-CCCcccccCCCcE
Q 005680          402 LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSL-TPSSILLDRNLVA  480 (683)
Q Consensus       402 ~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDL-KP~NILld~~~~~  480 (683)
                      ..||||||++|++|....           ...      ...++.+++.||.|||+   .+|+|||| ||+|||++.++.+
T Consensus        92 ~~~LVmE~~~G~~L~~~~-----------~~~------~~~~~~~i~~aL~~lH~---~gIiHrDL~KP~NILv~~~~~i  151 (365)
T PRK09188         92 KDGLVRGWTEGVPLHLAR-----------PHG------DPAWFRSAHRALRDLHR---AGITHNDLAKPQNWLMGPDGEA  151 (365)
T ss_pred             CcEEEEEccCCCCHHHhC-----------ccc------hHHHHHHHHHHHHHHHH---CCCeeCCCCCcceEEEcCCCCE
Confidence            679999999999996321           111      13578899999999999   77999999 9999999999999


Q ss_pred             EEecCCCccc
Q 005680          481 KISGLGLNIC  490 (683)
Q Consensus       481 KL~DFGla~~  490 (683)
                      ||+|||+|+.
T Consensus       152 kLiDFGlA~~  161 (365)
T PRK09188        152 AVIDFQLASV  161 (365)
T ss_pred             EEEECcccee
Confidence            9999999975

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.80  E-value=1.5e-19  Score=179.36  Aligned_cols=134  Identities=15%  Similarity=0.136  Sum_probs=107.2

Q ss_pred             cccccCCceEEEEEEE-CCeeEEEEEcCCCCC----------------------------HHHHHHHHHHHHhcCCCCcc
Q 005680          343 RLKCAGDWTNVYRGRL-NHASVAIKTLNNGLS----------------------------EEDFQAKVSFLTAVRHPHLV  393 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~-~g~~VAvK~l~~~~~----------------------------~~~~~~Ev~iL~~l~HpnIV  393 (683)
                      ..+|.|+||.||+|.. +|+.||||+++....                            ...+..|...+.++.|++|.
T Consensus         3 ~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~   82 (190)
T cd05145           3 GCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGVP   82 (190)
T ss_pred             ceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            4678999999999998 699999999873311                            11235789999999999885


Q ss_pred             ceecccccceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhcc-CCCCcEEeccCCCCcc
Q 005680          394 AVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS-TEPRPIVHGSLTPSSI  472 (683)
Q Consensus       394 ~l~g~~~~~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~-~~~~~IiHrDLKP~NI  472 (683)
                      ....+.....+|||||++|+++...+.          ....++......++.+++.+|.+||+ .   +|+||||||+||
T Consensus        83 ~p~~~~~~~~~lVmE~~~g~~~~~~~l----------~~~~~~~~~~~~i~~~l~~~l~~lH~~~---givHrDlkP~NI  149 (190)
T cd05145          83 VPEPILLKKNVLVMEFIGDDGSPAPRL----------KDVPLEEEEAEELYEQVVEQMRRLYQEA---GLVHGDLSEYNI  149 (190)
T ss_pred             CceEEEecCCEEEEEEecCCCchhhhh----------hhccCCHHHHHHHHHHHHHHHHHHHHhC---CEecCCCChhhE
Confidence            544443345689999999886544321          22457788899999999999999998 5   499999999999


Q ss_pred             cccCCCcEEEecCCCccc
Q 005680          473 LLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       473 Lld~~~~~KL~DFGla~~  490 (683)
                      |++ ++.++|+|||++..
T Consensus       150 ll~-~~~~~liDFG~a~~  166 (190)
T cd05145         150 LYH-DGKPYIIDVSQAVE  166 (190)
T ss_pred             EEE-CCCEEEEEccccee
Confidence            998 89999999999865

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.80  E-value=9e-20  Score=185.38  Aligned_cols=152  Identities=16%  Similarity=0.210  Sum_probs=121.9

Q ss_pred             cCccccccccccCCceEEEEEEECCeeEEEEEcCCCCC--HH---H------HHHHHHHHHhcCCCCccceeccccc---
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLS--EE---D------FQAKVSFLTAVRHPHLVAVMGCCSE---  401 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~--~~---~------~~~Ev~iL~~l~HpnIV~l~g~~~~---  401 (683)
                      ++| ...+++|+|+||.||....++..+|||++++...  ..   .      +.+|+..+.++.||+|..+..++..   
T Consensus        31 ~~y-~~~~~l~~~~f~~v~l~~~~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~~~  109 (232)
T PRK10359         31 YNI-KTIKVFRNIDDTKVSLIDTDYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLAER  109 (232)
T ss_pred             Cce-EEEEEecCCCceEEEEEecCCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeeccc
Confidence            344 4457778999999999877788999999973221  11   1      5799999999999999998877532   


Q ss_pred             -------ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccc
Q 005680          402 -------LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL  474 (683)
Q Consensus       402 -------~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILl  474 (683)
                             ..+|||||++|.+|.++..              ++.    ....+|+.+|..||.   .+++|||+||+||++
T Consensus       110 ~~~~~~~~~~lvmEyi~G~tL~~~~~--------------~~~----~~~~~i~~~l~~lH~---~gi~H~Dikp~Nili  168 (232)
T PRK10359        110 KTLRYAHTYIMLIEYIEGVELNDMPE--------------ISE----DVKAKIKASIESLHQ---HGMVSGDPHKGNFIV  168 (232)
T ss_pred             ccccccCCeEEEEEEECCccHHHhhh--------------ccH----HHHHHHHHHHHHHHH---cCCccCCCChHHEEE
Confidence                   4789999999999987741              222    245699999999999   679999999999999


Q ss_pred             cCCCcEEEecCCCccc-------------cCCCcccccccHHHHHHHHh
Q 005680          475 DRNLVAKISGLGLNIC-------------DQLNVRSDIRAFGTLLLHLL  510 (683)
Q Consensus       475 d~~~~~KL~DFGla~~-------------~~~t~ksDVwSlGviL~eLl  510 (683)
                      +.+| ++|+|||....             ..|+.++|+||||+++....
T Consensus       169 ~~~g-i~liDfg~~~~~~e~~a~d~~vler~y~~~~di~~lg~~~~~~~  216 (232)
T PRK10359        169 SKNG-LRIIDLSGKRCTAQRKAKDRIDLERHYGIKNEIKDLGYYLLIYK  216 (232)
T ss_pred             eCCC-EEEEECCCcccccchhhHHHHHHHhHhcccccccceeEeehHHH
Confidence            9988 99999998754             34668999999999987654

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.80  E-value=2.7e-20  Score=187.03  Aligned_cols=219  Identities=22%  Similarity=0.373  Sum_probs=176.3

Q ss_pred             cCCceEEEEEEECCeeEEEEEcCC----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCchhhhh
Q 005680          347 AGDWTNVYRGRLNHASVAIKTLNN----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRDKLF  420 (683)
Q Consensus       347 ~G~fG~Vykg~~~g~~VAvK~l~~----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~~L~  420 (683)
                      ....|..|+|++.|..+++|++..    .....+|..|.-.|+-+.||||+.++|.|..  ++.++..|||.|||+..|+
T Consensus       200 e~hsgelwrgrwqgndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~gslynvlh  279 (448)
T KOG0195|consen  200 ESHSGELWRGRWQGNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPFGSLYNVLH  279 (448)
T ss_pred             cCCCcccccccccCcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccchHHHHHHh
Confidence            445689999999999999999872    2233679999999999999999999999987  6788999999999999997


Q ss_pred             hcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEe--cCCCccc--------
Q 005680          421 TSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKIS--GLGLNIC--------  490 (683)
Q Consensus       421 ~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~--DFGla~~--------  490 (683)
                      ..        ....++-.++.+++.+|+.|++|||+..| -|.--.|.+..|+||++.+++|+  |--++..        
T Consensus       280 e~--------t~vvvd~sqav~faldiargmaflhslep-~ipr~~lns~hvmidedltarismad~kfsfqe~gr~y~p  350 (448)
T KOG0195|consen  280 EQ--------TSVVVDHSQAVRFALDIARGMAFLHSLEP-MIPRFYLNSKHVMIDEDLTARISMADTKFSFQEVGRAYSP  350 (448)
T ss_pred             cC--------ccEEEecchHHHHHHHHHhhHHHHhhcch-hhhhhhcccceEEecchhhhheecccceeeeeccccccCc
Confidence            54        44567888999999999999999999763 34445689999999999888774  3222211        


Q ss_pred             -------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhh
Q 005680          491 -------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCL  557 (683)
Q Consensus       491 -------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL  557 (683)
                                   +..-.++|+|||.++||||.|..-||.....   + .--+.-.+.+.+...|+.++..+..|+.-|+
T Consensus       351 awmspealqrkped~n~raadmwsfaillwel~trevpfadlsp---m-ecgmkialeglrv~ippgis~hm~klm~icm  426 (448)
T KOG0195|consen  351 AWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLSP---M-ECGMKIALEGLRVHIPPGISRHMNKLMNICM  426 (448)
T ss_pred             ccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCCc---h-hhhhhhhhccccccCCCCccHHHHHHHHHHh
Confidence                         1123578999999999999999999975332   1 1123344667788899999999999999999


Q ss_pred             hcCCCccccccHHHHHHHHHHHH
Q 005680          558 SADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       558 ~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      ..|  |.+||.++.++..|+++.
T Consensus       427 ned--pgkrpkfdmivpilekm~  447 (448)
T KOG0195|consen  427 NED--PGKRPKFDMIVPILEKMI  447 (448)
T ss_pred             cCC--CCcCCCcceehhhHHHhc
Confidence            999  779999999999998864

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.77  E-value=6e-18  Score=181.70  Aligned_cols=229  Identities=17%  Similarity=0.136  Sum_probs=166.4

Q ss_pred             CccccccccccCCceEEEEEEECC---eeEEEEEcCCCC--CHHHHHHHHHHHHhcCC----CCccceecccc-c--cee
Q 005680          337 DFSERFRLKCAGDWTNVYRGRLNH---ASVAIKTLNNGL--SEEDFQAKVSFLTAVRH----PHLVAVMGCCS-E--LKC  404 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~~g---~~VAvK~l~~~~--~~~~~~~Ev~iL~~l~H----pnIV~l~g~~~-~--~~~  404 (683)
                      .|.. .+.+|+|+||.||.|....   ..+|+|......  ....+..|+.++..+..    +++..+++... .  ..|
T Consensus        19 ~~~i-~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~   97 (322)
T KOG1164|consen   19 RYKL-GKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNF   97 (322)
T ss_pred             ceEE-eeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeE
Confidence            3433 3567899999999999833   479999876322  22278899999999973    58888887773 3  679


Q ss_pred             EEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC-----Cc
Q 005680          405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN-----LV  479 (683)
Q Consensus       405 LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~-----~~  479 (683)
                      |||+.+ |.||.++....        ....++..++++|+.|++.+|.+||+   .|++||||||+|+++...     ..
T Consensus        98 iVM~l~-G~sL~dl~~~~--------~~~~fs~~T~l~ia~q~l~~l~~lH~---~G~iHRDiKp~N~~~g~~~~~~~~~  165 (322)
T KOG1164|consen   98 IVMSLL-GPSLEDLRKRN--------PPGRFSRKTVLRIAIQNLNALEDLHS---KGFIHRDIKPENFVVGQSSRSEVRT  165 (322)
T ss_pred             EEEecc-CccHHHHHHhC--------CCCCcCHhHHHHHHHHHHHHHHHHHh---cCcccCCcCHHHeeecCCCCcccce
Confidence            999998 78999987433        25679999999999999999999999   779999999999999765     46


Q ss_pred             EEEecCCCcc--c---------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhh
Q 005680          480 AKISGLGLNI--C---------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMA  524 (683)
Q Consensus       480 ~KL~DFGla~--~---------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~  524 (683)
                      +.|.|||+++  .                                 ...+.+.|+||++.++.+++.|..|+....... 
T Consensus       166 ~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~~-  244 (322)
T KOG1164|consen  166 LYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEMTD-  244 (322)
T ss_pred             EEEEecCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccccccc-
Confidence            9999999997  1                                 124578899999999999999988875433210 


Q ss_pred             hhHHHHHHHhcC-CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          525 LDQTTLMQVLDG-NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       525 ~~~~~~~~ild~-~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                       ....+...... .........+..+..+...+-..+  ...+|....+...|......
T Consensus       245 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Pdy~~~~~~l~~~~~~  300 (322)
T KOG1164|consen  245 -LKSKFEKDPRKLLTDRFGDLKPEEFAKILEYIDSLD--YEDKPDYEKLAELLKDVFDS  300 (322)
T ss_pred             -hHHHHHHHhhhhccccccCCChHHHHHHHHHhhccC--CcCCCCHHHHHHHHHHHHHh
Confidence             01111111111 111122334556666666666566  66889999998888777654

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.76  E-value=2.9e-18  Score=170.31  Aligned_cols=223  Identities=13%  Similarity=0.158  Sum_probs=166.5

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcCC-CCccceeccccc--ceeEEEeecCCCCchh
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVRH-PHLVAVMGCCSE--LKCIVFEYMPNGNLRD  417 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~H-pnIV~l~g~~~~--~~~LV~Ey~~ggsL~~  417 (683)
                      +-+|.|+||.+|.|..  .|..||||+-.......++..|..+...|+| ..|..+..+..+  .-.|||+++ |.||++
T Consensus        21 rkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVMdLL-GPsLEd   99 (341)
T KOG1163|consen   21 RKIGSGSFGDIYLGISITSGEEVAIKLESSKAKHPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVMDLL-GPSLED   99 (341)
T ss_pred             EeecCCchhheeeeeeccCCceEEEEeecccCCCcchhHHHHHHHHhccCCCCchhhhhccccccceeeeecc-CccHHH
Confidence            4567999999999997  7999999998766666788999999999975 556555555544  678999999 789999


Q ss_pred             hhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC---CcEEEecCCCccc----
Q 005680          418 KLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN---LVAKISGLGLNIC----  490 (683)
Q Consensus       418 ~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~---~~~KL~DFGla~~----  490 (683)
                      ++.-         ....++..+++.++-|++.-++|+|.   +++|||||||+|+|..-+   ..+.|+|||+|+.    
T Consensus       100 Lfnf---------C~R~ftmkTvLMLaDQml~RiEyvH~---r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~  167 (341)
T KOG1163|consen  100 LFNF---------CSRRFTMKTVLMLADQMLSRIEYVHL---RNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDI  167 (341)
T ss_pred             HHHH---------HhhhhhHHhHHHHHHHHHHHHHHHHh---hccccccCCccceeeccccccceEEEEeccchhhhccc
Confidence            9842         34568999999999999999999999   779999999999999643   5789999999964    


Q ss_pred             ----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCC-
Q 005680          491 ----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIW-  541 (683)
Q Consensus       491 ----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~-  541 (683)
                                                  ...+.+-|+=|+|.+|....-|..||......  ........+........ 
T Consensus       168 ~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglka~--tk~QKyEkI~EkK~s~~i  245 (341)
T KOG1163|consen  168 RTRQHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLKAA--TKKQKYEKISEKKMSTPI  245 (341)
T ss_pred             cccccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccccchh--hHHHHHHHHHHhhcCCCH
Confidence                                        12356789999999999999999888654432  22222333333211111 


Q ss_pred             ---ChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          542 ---PLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       542 ---p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                         -...|.++...+.-|-..-  -.+-|...-+.+.+.-+.+.
T Consensus       246 e~LC~G~P~EF~myl~Y~R~L~--F~E~Pdy~ylrqlFriLfr~  287 (341)
T KOG1163|consen  246 EVLCKGFPAEFAMYLNYCRGLG--FEEKPDYMYLRQLFRILFRT  287 (341)
T ss_pred             HHHhCCCcHHHHHHHHHHhhcC--CCCCCcHHHHHHHHHHHHhh
Confidence               1235678888888887766  45667765555555555443

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.76  E-value=1.6e-17  Score=170.47  Aligned_cols=218  Identities=25%  Similarity=0.365  Sum_probs=165.5

Q ss_pred             cccccCCceEEEEEEECCeeEEEEEcCCCC-----CHHHHHHHHHHHHhcCCC-Cccceeccccc--ceeEEEeecCCCC
Q 005680          343 RLKCAGDWTNVYRGRLNHASVAIKTLNNGL-----SEEDFQAKVSFLTAVRHP-HLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g~~VAvK~l~~~~-----~~~~~~~Ev~iL~~l~Hp-nIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      ..+|.|+||.||++... ..+++|.+....     ....+.+|+.++..+.|+ +|+++++++..  ..+++++|+.+++
T Consensus         6 ~~l~~g~~~~v~~~~~~-~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~   84 (384)
T COG0515           6 RKLGEGSFGEVYLARDR-KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEYVDGGS   84 (384)
T ss_pred             EeecCCCCeEEEEEEec-cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEecCCCCc
Confidence            34568999999999988 789999987221     356799999999999988 79999998855  3599999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCC-cEEEecCCCccc---
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL-VAKISGLGLNIC---  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~-~~KL~DFGla~~---  490 (683)
                      |.+++....       ....++......++.|++.++.|+|.   .+++|||+||+||+++..+ .++++|||++..   
T Consensus        85 l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~H~---~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~  154 (384)
T COG0515          85 LEDLLKKIG-------RKGPLSESEALFILAQILSALEYLHS---KGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPD  154 (384)
T ss_pred             HHHHHHhcc-------cccCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHeeecCCCCeEEEeccCcceecCC
Confidence            997763220       00378999999999999999999999   6699999999999999988 799999997641   


Q ss_pred             ---------------------------c----CCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCC-
Q 005680          491 ---------------------------D----QLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNA-  538 (683)
Q Consensus       491 ---------------------------~----~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~-  538 (683)
                                                 .    .++..+|+||+|++++++++|..||......  .........+.... 
T Consensus       155 ~~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~~~~~~  232 (384)
T COG0515         155 PGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNS--SATSQTLKIILELPT  232 (384)
T ss_pred             CCccccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCcc--ccHHHHHHHHHhcCC
Confidence                                       1    4567899999999999999999997543210  00111111111111 


Q ss_pred             ----CCCChh----hHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          539 ----GIWPLD----LAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       539 ----~~~p~~----~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                          ......    ....+.+++..|+..+  |..|.+.......
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~  275 (384)
T COG0515         233 PSLASPLSPSNPELISKAASDLLKKLLAKD--PKNRLSSSSDLSH  275 (384)
T ss_pred             cccccccCccccchhhHHHHHHHHHHHhcC--chhcCCHHHHhhc
Confidence                111111    1357899999999999  7789887776654

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.75  E-value=3.9e-18  Score=170.48  Aligned_cols=152  Identities=12%  Similarity=0.082  Sum_probs=121.3

Q ss_pred             cccccCCceEEEEEEECCeeEEEEEcCCCCC-H-----HHHHHHHHHHHhcC-CCCccceecccccceeEEEeecCCCCc
Q 005680          343 RLKCAGDWTNVYRGRLNHASVAIKTLNNGLS-E-----EDFQAKVSFLTAVR-HPHLVAVMGCCSELKCIVFEYMPNGNL  415 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~-~-----~~~~~Ev~iL~~l~-HpnIV~l~g~~~~~~~LV~Ey~~ggsL  415 (683)
                      .++++|+||+||.+...+.+++.+.+..... .     ..+.+|+.+|.+|. |++|++++++  +..+++|+|+.|.+|
T Consensus         8 ~~l~~~~f~~v~~~~~~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~--~~~~lvmeyI~G~~L   85 (218)
T PRK12274          8 EPLKSDTFGRILLVRGGERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW--DGRHLDRSYLAGAAM   85 (218)
T ss_pred             eeecCCCcceEEEeecCCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE--cCEEEEEeeecCccH
Confidence            4678999999998888889999888873222 1     24789999999995 5889999886  457999999999998


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccC-CCCcccccCCCcEEEecCCCcccc---
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSL-TPSSILLDRNLVAKISGLGLNICD---  491 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDL-KP~NILld~~~~~KL~DFGla~~~---  491 (683)
                      .+.+.          . .      ...++.+++.+|.++|.   .||+|||| ||.|||++.++.++|+|||+|...   
T Consensus        86 ~~~~~----------~-~------~~~~~~qi~~~L~~lH~---~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~  145 (218)
T PRK12274         86 YQRPP----------R-G------DLAYFRAARRLLQQLHR---CGVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPR  145 (218)
T ss_pred             Hhhhh----------h-h------hHHHHHHHHHHHHHHHH---CcCccCCCCCcceEEEcCCCCEEEEECCCceecCCc
Confidence            75441          1 1      13477899999999999   67999999 799999999999999999998630   


Q ss_pred             ------------------------------------CCC-cccccccHHHHHHHHhhCCCCc
Q 005680          492 ------------------------------------QLN-VRSDIRAFGTLLLHLLTGRNWA  516 (683)
Q Consensus       492 ------------------------------------~~t-~ksDVwSlGviL~eLltG~~Pf  516 (683)
                                                          ..+ ...++++.|.-+|.++||.-|+
T Consensus       146 ~~~~r~L~~rDl~~llk~~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~  207 (218)
T PRK12274        146 ARWMRLLAREDLRHLLKHKRMYCPAALTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLH  207 (218)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCc
Confidence                                                011 3468889999999999988654

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.74  E-value=1.4e-17  Score=166.86  Aligned_cols=130  Identities=22%  Similarity=0.259  Sum_probs=108.7

Q ss_pred             cccccCCceEEEEEEECCeeEEEEEcCCCCC----------HHHHHHHHHHHHhcCCCCccceeccc--ccceeEEEeec
Q 005680          343 RLKCAGDWTNVYRGRLNHASVAIKTLNNGLS----------EEDFQAKVSFLTAVRHPHLVAVMGCC--SELKCIVFEYM  410 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~----------~~~~~~Ev~iL~~l~HpnIV~l~g~~--~~~~~LV~Ey~  410 (683)
                      +++|+|++|.||+|.+.|..|+||+......          ...+.+|+.++..+.|++|+....++  .+..++||||+
T Consensus         2 ~~l~~G~~~~vy~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~   81 (211)
T PRK14879          2 KLIKRGAEAEIYLGDFLGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEYI   81 (211)
T ss_pred             cccccCceEEEEEEeeCCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEEe
Confidence            4678999999999999999999998652211          13577899999999999987665554  44789999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~  490 (683)
                      +|++|.+++...          .   + .+..++.+++.+|.+||+   .+++|||++|.|||++ ++.++|+|||++..
T Consensus        82 ~G~~L~~~~~~~----------~---~-~~~~i~~~i~~~l~~lH~---~~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~  143 (211)
T PRK14879         82 EGEPLKDLINSN----------G---M-EELELSREIGRLVGKLHS---AGIIHGDLTTSNMILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             CCcCHHHHHHhc----------c---H-HHHHHHHHHHHHHHHHHh---CCcccCCCCcccEEEE-CCCEEEEECCcccC
Confidence            999999998321          1   1 778899999999999999   6799999999999999 78999999999865

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.73  E-value=3.5e-17  Score=169.06  Aligned_cols=229  Identities=15%  Similarity=0.179  Sum_probs=169.6

Q ss_pred             CccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcC-CCCccceeccccc--ceeEEEeecC
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVR-HPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~-HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      +|... +.||.|+||+++.|..  ++.+||||.-.......++..|....+.|. .++|..+|.+.++  +-.||+|++ 
T Consensus        29 hyrVG-kKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVidLL-  106 (449)
T KOG1165|consen   29 HYRVG-KKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKSEAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVIDLL-  106 (449)
T ss_pred             cceec-cccccCcceeeecccccccCceEEEEeccccCCcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhhhh-
Confidence            45443 5567999999999986  899999999775555678889998888884 6888887776666  667999999 


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC-----CcEEEecCC
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN-----LVAKISGLG  486 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~-----~~~KL~DFG  486 (683)
                      |.||+|++.         -....++..++..|+.|++.-+.|+|+   +.+|.|||||+|+||...     ..+.|+|||
T Consensus       107 GPSLEDLFD---------~CgR~FSvKTV~miA~Qmi~rie~vH~---k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFG  174 (449)
T KOG1165|consen  107 GPSLEDLFD---------LCGRRFSVKTVAMIAKQMITRIEYVHE---KDLIYRDIKPDNFLIGRPGTKDANVIHIIDFG  174 (449)
T ss_pred             CcCHHHHHH---------HhcCcccHHhHHHHHHHHHHHHHHHHh---cceeecccCccceeecCCCCCCCceEEEEecc
Confidence            789999984         345679999999999999999999999   779999999999999654     468999999


Q ss_pred             Cccc--------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHh
Q 005680          487 LNIC--------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVL  534 (683)
Q Consensus       487 la~~--------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~il  534 (683)
                      +|+.                                ...+.+-|+=|||-+++..|-|..||......  .....+..|-
T Consensus       175 mAK~YrDp~TkqHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLKA~--tnK~kYeKIG  252 (449)
T KOG1165|consen  175 MAKEYRDPKTKQHIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAD--TNKEKYEKIG  252 (449)
T ss_pred             chhhhcCccccccCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCccccccCc--chHHHHHHhc
Confidence            9964                                13457889999999999999999988654332  3344444444


Q ss_pred             cCCCCCCC----hhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          535 DGNAGIWP----LDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       535 d~~~~~~p----~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      +.......    ...|.++..-+.-.-..+  -.+-|..+-+...+..+.+..
T Consensus       253 e~Kr~T~i~~Lc~g~P~efa~Yl~yvR~L~--F~E~PDYdylr~Lf~dvldr~  303 (449)
T KOG1165|consen  253 ETKRSTPIEVLCEGFPEEFATYLRYVRRLD--FFETPDYDYLRKLFDDVLDRL  303 (449)
T ss_pred             cccccCCHHHHHhcCHHHHHHHHHHHHhcC--cccCCCHHHHHHHHHHHHHhc
Confidence            43221111    134566666555443444  335677666666666555433

>PRK10345 hypothetical protein; Provisional

Probab=99.72  E-value=1.2e-17  Score=168.48  Aligned_cols=130  Identities=12%  Similarity=0.149  Sum_probs=100.7

Q ss_pred             ccccccCCceEEEEEEECCeeEEEEEcCC--CCCHHHHHHHHHHHHhc-----CCCCccceecccccc-----ee-EEEe
Q 005680          342 FRLKCAGDWTNVYRGRLNHASVAIKTLNN--GLSEEDFQAKVSFLTAV-----RHPHLVAVMGCCSEL-----KC-IVFE  408 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~g~~VAvK~l~~--~~~~~~~~~Ev~iL~~l-----~HpnIV~l~g~~~~~-----~~-LV~E  408 (683)
                      ..++|+|+||.||....++. .+||++..  ......+.+|+.++..+     .||||++++|++.+.     .+ +|+|
T Consensus         7 ~~~LG~G~~~~Vy~hp~~~~-k~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~~I~e   85 (210)
T PRK10345          7 QSPLGTGRHRKCYAHPEDAQ-RCIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYDVIAD   85 (210)
T ss_pred             cceecCCCceEEEECCCCcC-eEEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEEEEec
Confidence            36789999999996222334 47998763  22456799999999999     579999999999763     23 7899


Q ss_pred             e--cCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhh-hhhccCCCCcEEeccCCCCcccccC----CCcEE
Q 005680          409 Y--MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGL-SFLHSTEPRPIVHGSLTPSSILLDR----NLVAK  481 (683)
Q Consensus       409 y--~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL-~yLH~~~~~~IiHrDLKP~NILld~----~~~~K  481 (683)
                      |  +++|||.+++.          . ..+++.  ..++.+++.++ .|||+   .+|+||||||+|||++.    ++.++
T Consensus        86 ~~G~~~~tL~~~l~----------~-~~~~e~--~~~~~~~L~~l~~yLh~---~~IvhrDlKp~NILl~~~~~~~~~~~  149 (210)
T PRK10345         86 FDGKPSITLTEFAE----------Q-CRYEED--VAQLRQLLKKLKRYLLD---NRIVTMELKPQNILCQRISESEVIPV  149 (210)
T ss_pred             CCCCcchhHHHHHH----------c-ccccHh--HHHHHHHHHHHHHHHHH---CCEeecCCCHHHEEEeccCCCCCcEE
Confidence            9  66899999993          2 235555  35688888888 99999   66999999999999974    34899


Q ss_pred             EecCCCc
Q 005680          482 ISGLGLN  488 (683)
Q Consensus       482 L~DFGla  488 (683)
                      |+||+.+
T Consensus       150 LiDg~G~  156 (210)
T PRK10345        150 VCDNIGE  156 (210)
T ss_pred             EEECCCC
Confidence            9995443

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.71  E-value=3.2e-17  Score=162.85  Aligned_cols=126  Identities=24%  Similarity=0.294  Sum_probs=103.4

Q ss_pred             ccccCCceEEEEEEECCeeEEEEEcCCCC---C-------HHHHHHHHHHHHhcCCCCcc--ceecccccceeEEEeecC
Q 005680          344 LKCAGDWTNVYRGRLNHASVAIKTLNNGL---S-------EEDFQAKVSFLTAVRHPHLV--AVMGCCSELKCIVFEYMP  411 (683)
Q Consensus       344 liG~G~fG~Vykg~~~g~~VAvK~l~~~~---~-------~~~~~~Ev~iL~~l~HpnIV--~l~g~~~~~~~LV~Ey~~  411 (683)
                      ++|+|+||.||+|.++|..|++|......   .       ...+.+|+.++..++|+++.  .+++...+..++||||++
T Consensus         1 ~ig~G~~~~vy~~~~~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~~   80 (199)
T TIGR03724         1 LIAKGAEAIIYLGDFLGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYIE   80 (199)
T ss_pred             CCCCCceEEEEEeecCCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEC
Confidence            46899999999999999999999965211   1       24577899999999887654  444444557799999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~  490 (683)
                      |++|.+++...          ..       .++.+++.+|.+||+   .+++|+|++|.||+++ ++.++++|||++..
T Consensus        81 g~~l~~~~~~~----------~~-------~~~~~i~~~l~~lH~---~gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~  138 (199)
T TIGR03724        81 GKPLKDVIEEG----------ND-------ELLREIGRLVGKLHK---AGIVHGDLTTSNIIVR-DDKLYLIDFGLGKY  138 (199)
T ss_pred             CccHHHHHhhc----------HH-------HHHHHHHHHHHHHHH---CCeecCCCCcceEEEE-CCcEEEEECCCCcC
Confidence            99999988321          11       789999999999999   7799999999999999 89999999999865

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=2.6e-18  Score=197.71  Aligned_cols=220  Identities=18%  Similarity=0.231  Sum_probs=159.9

Q ss_pred             ccccccccccCCceEEEEEEE--CCeeEEEEEcC----CCCCH----HHHHHHHHHHHhcCCCCccceeccccc--ceeE
Q 005680          338 FSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN----NGLSE----EDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCI  405 (683)
Q Consensus       338 F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~----~~~~~----~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~L  405 (683)
                      |.....++|.|++|.|+....  ....++.|...    .....    ..+..|+.+-..+.|||++..+..+.+  ..+-
T Consensus       319 y~~~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~  398 (601)
T KOG0590|consen  319 YGKPGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGILQ  398 (601)
T ss_pred             cCCccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccchh
Confidence            333456788999998887765  33444444332    22221    225668888888999999888877765  3344


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecC
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGL  485 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DF  485 (683)
                      +||||++ +|..++          .....++...+..++.|++.|+.|||+   .||.||||||+|+|++.+|.+||+||
T Consensus       399 ~mE~~~~-Dlf~~~----------~~~~~~~~~e~~c~fKqL~~Gv~y~h~---~GiahrdlK~enll~~~~g~lki~Df  464 (601)
T KOG0590|consen  399 SMEYCPY-DLFSLV----------MSNGKLTPLEADCFFKQLLRGVKYLHS---MGLAHRDLKLENLLVTENGILKIIDF  464 (601)
T ss_pred             hhhcccH-HHHHHH----------hcccccchhhhhHHHHHHHHHHHHHHh---cCceeccCccccEEEecCCceEEeec
Confidence            4999998 999999          344578889999999999999999999   67999999999999999999999999


Q ss_pred             CCccc-----------------------------cCC-CcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhc
Q 005680          486 GLNIC-----------------------------DQL-NVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLD  535 (683)
Q Consensus       486 Gla~~-----------------------------~~~-t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild  535 (683)
                      |.+..                             ..| ....||||.|++++.|++|+.||.........  ........
T Consensus       465 g~~~vf~~~~e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~--~~~~~~~~  542 (601)
T KOG0590|consen  465 GAASVFRYPWEKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNS--FKTNNYSD  542 (601)
T ss_pred             CcceeeccCcchhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCccccccccccc--hhhhcccc
Confidence            98743                             112 24689999999999999999988643221000  00000001


Q ss_pred             C---CCC--CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          536 G---NAG--IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       536 ~---~~~--~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .   ..+  .....++...+.++.++|+.|  |..|.|+.+|++.
T Consensus       543 ~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~--P~~R~ti~~i~~d  585 (601)
T KOG0590|consen  543 QRNIFEGPNRLLSLLPRETRIIIYRMLQLD--PTKRITIEQILND  585 (601)
T ss_pred             ccccccChHHHHHhchhhHHHHHHHHccCC--hhheecHHHHhhC
Confidence            1   011  112356788999999999999  8899999998763

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.70  E-value=4.6e-17  Score=180.44  Aligned_cols=185  Identities=23%  Similarity=0.383  Sum_probs=146.2

Q ss_pred             HHhcCCCCccceeccccc--ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCc
Q 005680          384 LTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP  461 (683)
Q Consensus       384 L~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~  461 (683)
                      |+.+.|.|+.+++|.+.+  ..++|.+||..|+|.|.+.         .....++|.....++.+|+.||.|||+.. ..
T Consensus         1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~---------~~~~~~d~~F~~s~~rdi~~Gl~ylh~s~-i~   70 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILS---------NEDIKLDYFFILSFIRDISKGLAYLHNSP-IG   70 (484)
T ss_pred             CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHh---------ccccCccHHHHHHHHHHHHHHHHHHhcCc-ce
Confidence            457899999999999977  6789999999999999995         34567899999999999999999999954 22


Q ss_pred             EEeccCCCCcccccCCCcEEEecCCCcccc----------------------------------CCCcccccccHHHHHH
Q 005680          462 IVHGSLTPSSILLDRNLVAKISGLGLNICD----------------------------------QLNVRSDIRAFGTLLL  507 (683)
Q Consensus       462 IiHrDLKP~NILld~~~~~KL~DFGla~~~----------------------------------~~t~ksDVwSlGviL~  507 (683)
                       .|+.+++.|+++|..+.+||+|||+....                                  ..+.+.||||||++++
T Consensus        71 -~hg~l~s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~  149 (484)
T KOG1023|consen   71 -YHGALKSSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMY  149 (484)
T ss_pred             -eeeeeccccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHH
Confidence             99999999999999999999999986320                                  1467899999999999


Q ss_pred             HHhhCCCCchhhHHHhhhhHHHHHHHhc-CCCCCCCh-----hhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHH
Q 005680          508 HLLTGRNWAGLVEKAMALDQTTLMQVLD-GNAGIWPL-----DLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRK  581 (683)
Q Consensus       508 eLltG~~Pf~~~~~~~~~~~~~~~~ild-~~~~~~p~-----~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~  581 (683)
                      |+++...||+........ ...+..+.+ +..+..|.     ..++.+..++..||..+  |..||++..|...++.+..
T Consensus       150 ei~~r~~~~~~~~~~~~~-~eii~~~~~~~~~~~rP~i~~~~e~~~~l~~l~~~cw~e~--P~~rPs~~~i~~~~~~~~~  226 (484)
T KOG1023|consen  150 EILFRSGPFDLRNLVEDP-DEIILRVKKGGSNPFRPSIELLNELPPELLLLVARCWEEI--PEKRPSIEQIRSKLLTINK  226 (484)
T ss_pred             HHHhccCccccccccCCh-HHHHHHHHhcCCCCcCcchhhhhhcchHHHHHHHHhcccC--hhhCccHHHHHhhhhhhcc
Confidence            999999999764332111 222333333 22111221     34557999999999999  8899999999988877765


Q ss_pred             h
Q 005680          582 K  582 (683)
Q Consensus       582 ~  582 (683)
                      .
T Consensus       227 ~  227 (484)
T KOG1023|consen  227 G  227 (484)
T ss_pred             c
Confidence            3

>smart00090 RIO RIO-like kinase

Probab=99.69  E-value=6.5e-17  Score=166.36  Aligned_cols=135  Identities=14%  Similarity=0.145  Sum_probs=105.8

Q ss_pred             ccccccccCCceEEEEEE-E--CCeeEEEEEcCCCCC--------------------------HHHHHHHHHHHHhcCCC
Q 005680          340 ERFRLKCAGDWTNVYRGR-L--NHASVAIKTLNNGLS--------------------------EEDFQAKVSFLTAVRHP  390 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~-~--~g~~VAvK~l~~~~~--------------------------~~~~~~Ev~iL~~l~Hp  390 (683)
                      .....+|.|+||.||+|. .  +|..||||+++....                          ...+..|+.++.++.+.
T Consensus        31 ~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~~~  110 (237)
T smart00090       31 AIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLYEA  110 (237)
T ss_pred             HhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            344678899999999998 3  789999999873210                          02356899999999753


Q ss_pred             C--ccceecccccceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCc-EEeccC
Q 005680          391 H--LVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP-IVHGSL  467 (683)
Q Consensus       391 n--IV~l~g~~~~~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~-IiHrDL  467 (683)
                      +  +.+++++  ...+|||||++|++|...+.          ....+.......++.||+.+|.+||+   .+ |+||||
T Consensus       111 ~i~~p~~~~~--~~~~lV~E~~~g~~L~~~~~----------~~~~~~~~~~~~i~~qi~~~l~~LH~---~g~iiH~Di  175 (237)
T smart00090      111 GVPVPKPIAW--RRNVLVMEFIGGDGLPAPRL----------KDVEPEEEEEFELYDDILEEMRKLYK---EGELVHGDL  175 (237)
T ss_pred             CCCCCeeeEe--cCceEEEEEecCCccccccc----------ccCCcchHHHHHHHHHHHHHHHHHHh---cCCEEeCCC
Confidence            3  3444543  24589999999988877652          22345666678899999999999999   77 999999


Q ss_pred             CCCcccccCCCcEEEecCCCccc
Q 005680          468 TPSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       468 KP~NILld~~~~~KL~DFGla~~  490 (683)
                      ||+||+++ ++.++|+|||.+..
T Consensus       176 kp~NIli~-~~~i~LiDFg~a~~  197 (237)
T smart00090      176 SEYNILVH-DGKVVIIDVSQSVE  197 (237)
T ss_pred             ChhhEEEE-CCCEEEEEChhhhc
Confidence            99999999 88999999999864

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=99.68  E-value=2.4e-17  Score=138.26  Aligned_cols=73  Identities=37%  Similarity=0.747  Sum_probs=64.5

Q ss_pred             CCccccccccccccCCCcccCCCcchhhHHHHHHHcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHhhcCC
Q 005680          608 VPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNKQSS  680 (683)
Q Consensus       608 ~Ps~f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN~~lr~~I~~w~~~~~~  680 (683)
                      +|+.|.|||+.++|.|||++++|+||||++|+.|+..++.+||+|+++++...|+||++||++|++|+.+|.+
T Consensus         1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~~   73 (73)
T PF04564_consen    1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENKK   73 (73)
T ss_dssp             SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCTC
T ss_pred             CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHccC
Confidence            5899999999999999999999999999999999998899999999999999999999999999999999864

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.67  E-value=1.2e-16  Score=167.17  Aligned_cols=206  Identities=16%  Similarity=0.178  Sum_probs=132.4

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCC----------CCccceeccc-----
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRH----------PHLVAVMGCC-----  399 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~H----------pnIV~l~g~~-----  399 (683)
                      ..++|.|+|+.||.+++  +|..+|||++...     ...+.+.+|.-....+.+          -.++-.++..     
T Consensus        17 ~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~i~~~   96 (288)
T PF14531_consen   17 GRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLRIPGK   96 (288)
T ss_dssp             EEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEEETTS
T ss_pred             ccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEEEcCC
Confidence            35778999999999999  6899999998621     123566666655444322          1111111111     


Q ss_pred             -------c--c-----ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEec
Q 005680          400 -------S--E-----LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHG  465 (683)
Q Consensus       400 -------~--~-----~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHr  465 (683)
                             .  .     +.+++|+-+. +||.+++..-....   .....+....+..+..|++..+++||+   .|+||+
T Consensus        97 ~~~~~~~~~~~~~~v~n~~~l~P~~~-~dL~~~~~~l~~~~---~~~~~l~~~arl~lT~Q~I~lvA~Lh~---~GlVHg  169 (288)
T PF14531_consen   97 PPFFERGPGQSIYWVLNRFLLMPRAQ-GDLQDLVEALFSRA---QTHSPLAFAARLSLTVQMIRLVANLHS---YGLVHG  169 (288)
T ss_dssp             -SEEEECETTEEEEEESEEEEEE--S-EEHHHHHHHHHHHT---TTSHHHHHHHHHHHHHHHHHHHHHHHH---TTEEES
T ss_pred             CcceecCCCCccceeehhhhccchhh-hcHHHHHHHHhhcc---cccchhHHHHHHHHHHHHHHHHHHHhh---cceEec
Confidence                   0  0     3467888775 78988864321100   112345566677788999999999999   779999


Q ss_pred             cCCCCcccccCCCcEEEecCCCccc------------------------------cCCCcccccccHHHHHHHHhhCCCC
Q 005680          466 SLTPSSILLDRNLVAKISGLGLNIC------------------------------DQLNVRSDIRAFGTLLLHLLTGRNW  515 (683)
Q Consensus       466 DLKP~NILld~~~~~KL~DFGla~~------------------------------~~~t~ksDVwSlGviL~eLltG~~P  515 (683)
                      ||+|+|++++.+|.++|+||+....                              -.++.+.|.|+||+++|.|++|..|
T Consensus       170 di~~~nfll~~~G~v~Lg~F~~~~r~g~~~~~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lP  249 (288)
T PF14531_consen  170 DIKPENFLLDQDGGVFLGDFSSLVRAGTRYRCSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLP  249 (288)
T ss_dssp             T-SGGGEEE-TTS-EEE--GGGEEETTEEEEGGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-S
T ss_pred             ccceeeEEEcCCCCEEEcChHHHeecCceeeccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHccCC
Confidence            9999999999999999999986421                              1267889999999999999999999


Q ss_pred             chhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCcccc
Q 005680          516 AGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRD  566 (683)
Q Consensus       516 f~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~R  566 (683)
                      |+..........         .-.... .+|+.+..||..+|+.|  |++|
T Consensus       250 f~~~~~~~~~~~---------~f~~C~-~~Pe~v~~LI~~lL~~~--~~~R  288 (288)
T PF14531_consen  250 FGLSSPEADPEW---------DFSRCR-DMPEPVQFLIRGLLQRN--PEDR  288 (288)
T ss_dssp             TCCCGGGSTSGG---------GGTTSS----HHHHHHHHHHT-SS--GGGS
T ss_pred             CCCCCccccccc---------cchhcC-CcCHHHHHHHHHHccCC--cccC
Confidence            986543211111         112233 78899999999999999  6666

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.66  E-value=2e-17  Score=183.62  Aligned_cols=200  Identities=21%  Similarity=0.236  Sum_probs=166.2

Q ss_pred             cccCCceEEEEEEE-----CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcC-CCCccceeccccc--ceeEEEeecCC
Q 005680          345 KCAGDWTNVYRGRL-----NHASVAIKTLNNG----LSEEDFQAKVSFLTAVR-HPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       345 iG~G~fG~Vykg~~-----~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~-HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      .|.|+||.|+.+.-     .|.-+|+|+++..    ........|..++..++ ||.+|++...++.  ..+++++|..|
T Consensus         2 lg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~rg   81 (612)
T KOG0603|consen    2 LGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLRG   81 (612)
T ss_pred             CCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhccc
Confidence            57899999987643     5678999998722    11225567888999997 9999999888865  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |.|...+          .....+.+.....+...++-|+.++|.   .+|+|||+|++||+++.+|++++.|||+++.  
T Consensus        82 g~lft~l----------~~~~~f~~~~~~~~~aelaLald~lh~---l~iiyrd~k~enilld~~Ghi~~tdfglske~v  148 (612)
T KOG0603|consen   82 GDLFTRL----------SKEVMFDELDVAFYLAELALALDHLHK---LGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAV  148 (612)
T ss_pred             chhhhcc----------ccCCchHHHHHHHHHHHHHHHHhhcch---hHHHHhcccccceeecccCccccCCchhhhHhH
Confidence            9999988          566778888899999999999999999   6799999999999999999999999999864  


Q ss_pred             -----------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHH
Q 005680          491 -----------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIA  553 (683)
Q Consensus       491 -----------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li  553 (683)
                                       ......+|+||||+++++|+||..||..          .....+-......|...+..+.+++
T Consensus       149 ~~~~~cgt~eymApEI~~gh~~a~D~ws~gvl~felltg~~pf~~----------~~~~~Il~~~~~~p~~l~~~a~~~~  218 (612)
T KOG0603|consen  149 KEKIACGTYEYRAPEIINGHLSAADWWSFGVLAFELLTGTLPFGG----------DTMKRILKAELEMPRELSAEARSLF  218 (612)
T ss_pred             hhhhcccchhhhhhHhhhccCCcccchhhhhhHHHHhhCCCCCch----------HHHHHHhhhccCCchhhhHHHHHHH
Confidence                             2367899999999999999999999975          1222333345567888999999999


Q ss_pred             HHhhhcCCCccccccH
Q 005680          554 LKCLSADQDANRDLRI  569 (683)
Q Consensus       554 ~~CL~~dP~p~~RPs~  569 (683)
                      ..++..+  |..|.-.
T Consensus       219 ~~l~~r~--p~nrLg~  232 (612)
T KOG0603|consen  219 RQLFKRN--PENRLGA  232 (612)
T ss_pred             HHHHhhC--HHHHhcc
Confidence            9999999  7688764

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.65  E-value=6e-17  Score=187.45  Aligned_cols=209  Identities=18%  Similarity=0.227  Sum_probs=159.1

Q ss_pred             ccccCCceEEEEEEECCeeEEEEEcCC---CCCHHHHH---HHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCc
Q 005680          344 LKCAGDWTNVYRGRLNHASVAIKTLNN---GLSEEDFQ---AKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNL  415 (683)
Q Consensus       344 liG~G~fG~Vykg~~~g~~VAvK~l~~---~~~~~~~~---~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL  415 (683)
                      -+|++.|=+|.+|.++...|+||++-.   ..+...|.   .|+. ...++|||.+++.-+-..  ..|||-+|+. -+|
T Consensus        30 ~LGstRFlKv~r~k~~eG~vVvKVFvk~~p~~sL~~~~qrL~~ik-~~l~~~pn~lPfqk~~~t~kAAylvRqyvk-hnL  107 (1431)
T KOG1240|consen   30 NLGSTRFLKVARAKDREGLVVVKVFVKQDPTISLRPFKQRLEEIK-FALMKAPNCLPFQKVLVTDKAAYLVRQYVK-HNL  107 (1431)
T ss_pred             ccCchhhhhhhhccCCCceEEEEEEeccCCCCCchHHHHHHHHHH-HHhhcCCcccchHHHHHhhHHHHHHHHHHh-hhh
Confidence            457899999999999665699999862   22334444   3444 555699999998776544  6789999996 589


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-----
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-----  490 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-----  490 (683)
                      .|.|          ..++-|..-+..-|+.|++.||.-+|.   .+|+|||||.+||||++=.-+.|+||..-+.     
T Consensus       108 yDRl----------STRPFL~~iEKkWiaFQLL~al~qcH~---~gVcHGDIKsENILiTSWNW~~LtDFAsFKPtYLPe  174 (1431)
T KOG1240|consen  108 YDRL----------STRPFLVLIEKKWIAFQLLKALSQCHK---LGVCHGDIKSENILITSWNWLYLTDFASFKPTYLPE  174 (1431)
T ss_pred             hhhh----------ccchHHHHHHHHHHHHHHHHHHHHHHH---cCccccccccceEEEeeechhhhhcccccCCccCCC
Confidence            9999          466778888888899999999999999   7799999999999999988899999975332     


Q ss_pred             -------------------------------------cC-CCcccccccHHHHHHHHhh-CCCCchhhHHH--hhhhHHH
Q 005680          491 -------------------------------------DQ-LNVRSDIRAFGTLLLHLLT-GRNWAGLVEKA--MALDQTT  529 (683)
Q Consensus       491 -------------------------------------~~-~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~--~~~~~~~  529 (683)
                                                           .. .+++.||||+||++.||++ |+|||.+..-.  .......
T Consensus       175 DNPadf~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~LSQL~aYr~~~~~~  254 (1431)
T KOG1240|consen  175 DNPADFTFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTLSQLLAYRSGNADD  254 (1431)
T ss_pred             CCcccceEEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccHHHHHhHhccCccC
Confidence                                                 12 6789999999999999999 89999764321  1111111


Q ss_pred             HHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHH
Q 005680          530 LMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       530 ~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                      ...++...       ....++.++..|++.|  |..|.++.+.++.-
T Consensus       255 ~e~~Le~I-------ed~~~Rnlil~Mi~rd--Ps~RlSAedyL~~y  292 (1431)
T KOG1240|consen  255 PEQLLEKI-------EDVSLRNLILSMIQRD--PSKRLSAEDYLQKY  292 (1431)
T ss_pred             HHHHHHhC-------cCccHHHHHHHHHccC--chhccCHHHHHHhh
Confidence            22222211       1236899999999999  77999999999873

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.65  E-value=4.7e-16  Score=155.07  Aligned_cols=131  Identities=19%  Similarity=0.144  Sum_probs=103.4

Q ss_pred             cccccccccCCceEEEEEEE-CCeeEEEEEcCCCC------------------------CHHHHHHHHHHHHhcCCC--C
Q 005680          339 SERFRLKCAGDWTNVYRGRL-NHASVAIKTLNNGL------------------------SEEDFQAKVSFLTAVRHP--H  391 (683)
Q Consensus       339 ~~~~~liG~G~fG~Vykg~~-~g~~VAvK~l~~~~------------------------~~~~~~~Ev~iL~~l~Hp--n  391 (683)
                      ......+|.|+||.||+|.. +|+.||||+++...                        ....+..|+.++..+.|+  .
T Consensus        17 ~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~   96 (198)
T cd05144          17 ESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGFP   96 (198)
T ss_pred             hhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCCC
Confidence            33446788999999999988 68999999875221                        012356789999999887  4


Q ss_pred             ccceecccccceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCc
Q 005680          392 LVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSS  471 (683)
Q Consensus       392 IV~l~g~~~~~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~N  471 (683)
                      +...++.  ...++||||++|++|.....          .      .....++.+++.++.++|.   .+|+||||||+|
T Consensus        97 v~~~~~~--~~~~lv~e~~~g~~L~~~~~----------~------~~~~~~~~~i~~~l~~lh~---~gi~H~Dl~p~N  155 (198)
T cd05144          97 VPKPIDW--NRHAVVMEYIDGVELYRVRV----------L------EDPEEVLDEILEEIVKAYK---HGIIHGDLSEFN  155 (198)
T ss_pred             CCceeec--CCceEEEEEeCCcchhhccc----------c------ccHHHHHHHHHHHHHHHHH---CCCCcCCCCccc
Confidence            4555543  35689999999999876551          1      2345688999999999999   679999999999


Q ss_pred             ccccCCCcEEEecCCCccc
Q 005680          472 ILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       472 ILld~~~~~KL~DFGla~~  490 (683)
                      |+++.++.++|+|||++..
T Consensus       156 ill~~~~~~~liDfg~~~~  174 (198)
T cd05144         156 ILVDDDEKIYIIDWPQMVS  174 (198)
T ss_pred             EEEcCCCcEEEEECCcccc
Confidence            9999999999999999854

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.63  E-value=6e-16  Score=177.38  Aligned_cols=128  Identities=25%  Similarity=0.300  Sum_probs=105.3

Q ss_pred             ccccccCCceEEEEEEECCeeEEEEEcC-CC---------CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEee
Q 005680          342 FRLKCAGDWTNVYRGRLNHASVAIKTLN-NG---------LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEY  409 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~g~~VAvK~l~-~~---------~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey  409 (683)
                      .+++|+|+||.||+|.+.+..+++|+.. ..         .....+.+|+.++..++|++++..+.++.+  ..++||||
T Consensus       338 ~~~iG~G~~g~Vy~~~~~~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~E~  417 (535)
T PRK09605        338 DHLIGKGAEADIKKGEYLGRDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEEKTIVMEY  417 (535)
T ss_pred             cceeccCCcEEEEEEeecCccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCCCEEEEEe
Confidence            4678999999999999977666666532 11         012468899999999999999876655543  78899999


Q ss_pred             cCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCcc
Q 005680          410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNI  489 (683)
Q Consensus       410 ~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~  489 (683)
                      ++|++|.+++.                  ....++.+++.+|.|||+   .+|+||||||+|||+ .++.++|+|||+++
T Consensus       418 ~~g~~L~~~l~------------------~~~~~~~~i~~~L~~lH~---~giiHrDlkp~NILl-~~~~~~liDFGla~  475 (535)
T PRK09605        418 IGGKDLKDVLE------------------GNPELVRKVGEIVAKLHK---AGIVHGDLTTSNFIV-RDDRLYLIDFGLGK  475 (535)
T ss_pred             cCCCcHHHHHH------------------HHHHHHHHHHHHHHHHHh---CCCccCCCChHHEEE-ECCcEEEEeCcccc
Confidence            99999999882                  346789999999999999   679999999999999 67899999999997


Q ss_pred             cc
Q 005680          490 CD  491 (683)
Q Consensus       490 ~~  491 (683)
                      ..
T Consensus       476 ~~  477 (535)
T PRK09605        476 YS  477 (535)
T ss_pred             cC
Confidence            63

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.61  E-value=1e-15  Score=161.35  Aligned_cols=169  Identities=18%  Similarity=0.245  Sum_probs=126.9

Q ss_pred             CCCCccceeccccc-----------------------------ceeEEEeecCCCCchhhhhhcccccccccccccCCHH
Q 005680          388 RHPHLVAVMGCCSE-----------------------------LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWL  438 (683)
Q Consensus       388 ~HpnIV~l~g~~~~-----------------------------~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~  438 (683)
                      +|||||++.++|.+                             ..|+||.-++ .+|..+|.           ....+..
T Consensus       274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~-~tLr~yl~-----------~~~~s~r  341 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYR-QTLREYLW-----------TRHRSYR  341 (598)
T ss_pred             CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcch-hhHHHHHh-----------cCCCchH
Confidence            69999999988743                             2388998886 68999983           2345666


Q ss_pred             HHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccc--cCCC--cEEEecCCCcccc-----------------------
Q 005680          439 DRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL--DRNL--VAKISGLGLNICD-----------------------  491 (683)
Q Consensus       439 ~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILl--d~~~--~~KL~DFGla~~~-----------------------  491 (683)
                      ...-|+.|+++|+.|||.   .+|.|||+|++||||  |+++  .+.|+|||.|-..                       
T Consensus       342 ~~~~~laQlLEav~hL~~---hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lm  418 (598)
T KOG4158|consen  342 TGRVILAQLLEAVTHLHK---HGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLM  418 (598)
T ss_pred             HHHHHHHHHHHHHHHHHH---ccchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceec
Confidence            777799999999999999   569999999999999  4444  5789999987320                       


Q ss_pred             ----------C----CCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhh
Q 005680          492 ----------Q----LNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCL  557 (683)
Q Consensus       492 ----------~----~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL  557 (683)
                                .    .-.|+|.|+.|.+.||+++...||...... ..+...   ......+..|..+++.+.+|+...|
T Consensus       419 APEi~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem-~L~~r~---Yqe~qLPalp~~vpp~~rqlV~~lL  494 (598)
T KOG4158|consen  419 APEIATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEM-LLDTRT---YQESQLPALPSRVPPVARQLVFDLL  494 (598)
T ss_pred             chhhhhcCCCCceeeccchhhhhhhhhhHHHHhccCCcccccchh-eechhh---hhhhhCCCCcccCChHHHHHHHHHh
Confidence                      0    114899999999999999999999752211 111111   2223456677889999999999999


Q ss_pred             hcCCCccccccHHHHHHHHH
Q 005680          558 SADQDANRDLRIAGVMKELD  577 (683)
Q Consensus       558 ~~dP~p~~RPs~~eVl~~L~  577 (683)
                      +.|  |.+|++..-....|.
T Consensus       495 ~r~--pskRvsp~iAANvl~  512 (598)
T KOG4158|consen  495 KRD--PSKRVSPNIAANVLN  512 (598)
T ss_pred             cCC--ccccCCccHHHhHHH
Confidence            999  889998655555543

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=2.6e-15  Score=177.01  Aligned_cols=208  Identities=18%  Similarity=0.242  Sum_probs=143.4

Q ss_pred             ccccccCCceEEEEEEE-CCeeEEEEEcCCCCCHHHHHHHHHHHHhcC---CCCccceec--ccccceeEEEeecCCCCc
Q 005680          342 FRLKCAGDWTNVYRGRL-NHASVAIKTLNNGLSEEDFQAKVSFLTAVR---HPHLVAVMG--CCSELKCIVFEYMPNGNL  415 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~-~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~---HpnIV~l~g--~~~~~~~LV~Ey~~ggsL  415 (683)
                      .+.+|.|+||.||+|.. +|+.||+|+-++... -+|.-=.+++.+|+   -+-|..+..  .|.+..+||+||.+.|||
T Consensus       703 ~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~-WEfYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~S~lv~ey~~~Gtl  781 (974)
T KOG1166|consen  703 SKEIGEGSYGSVYVATHSNGKLVALKVEKPPNP-WEFYICLQVMERLKPQMLPSIMHISSAHVFQNASVLVSEYSPYGTL  781 (974)
T ss_pred             EeeeccccceEEEEeecCCCcEEEEEeecCCCc-eeeeehHHHHHhhchhhhcchHHHHHHHccCCcceeeeeccccccH
Confidence            46778999999999998 789999999864332 22222234455555   122333332  235678999999999999


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccccc-------CCCcEEEecCCCc
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD-------RNLVAKISGLGLN  488 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld-------~~~~~KL~DFGla  488 (683)
                      .+++          .....++|..+..|+.|++.-+..||.   .+|||+||||+|+||.       .+..++|+|||.+
T Consensus       782 ld~~----------N~~~~m~e~lv~~~~~qml~ive~lH~---~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~s  848 (974)
T KOG1166|consen  782 LDLI----------NTNKVMDEYLVMFFSCQMLRIVEHLHA---MGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRS  848 (974)
T ss_pred             HHhh----------ccCCCCCchhhhHHHHHHHHHHHHHHh---cceecccCCcceeEeecccCCCCcccceEEEecccc
Confidence            9999          466789999999999999999999999   5699999999999993       2356999999987


Q ss_pred             cc---------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCC--
Q 005680          489 IC---------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG--  539 (683)
Q Consensus       489 ~~---------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~--  539 (683)
                      .-                           ..++..+|.|.|..+++-||.|+.-                ++.++..-  
T Consensus       849 iDm~lfp~~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y~----------------q~~~g~~~~~  912 (974)
T KOG1166|consen  849 IDMKLFPDGTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKYM----------------EVKNGSSWMV  912 (974)
T ss_pred             eeeeEcCCCcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHHH----------------HhcCCcceec
Confidence            32                           3466778888888888888877531                12222110  


Q ss_pred             --CCChhhH-HHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHH
Q 005680          540 --IWPLDLA-EELAGIALKCLSADQDANRDLRIAGVMKELDEVRK  581 (683)
Q Consensus       540 --~~p~~~~-~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~  581 (683)
                        .++...- .-..++...+|+.|  -..=|...++...|+....
T Consensus       913 ~~~~~Ry~~~~~W~~~F~~lLN~~--~~~~p~l~~lr~~~~~~~~  955 (974)
T KOG1166|consen  913 KTNFPRYWKRDMWNKFFDLLLNPD--CDTLPNLQELRTELEEVLA  955 (974)
T ss_pred             cccchhhhhHHHHHHHHHHHhCcC--cccchhHHHHHHHHHHHHH
Confidence              1121111 22335555666644  4455666777766666543

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.59  E-value=1.2e-14  Score=135.06  Aligned_cols=145  Identities=18%  Similarity=0.188  Sum_probs=117.0

Q ss_pred             cccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhcCC--CCccceeccccc--ceeEEEeecCCCCchhh
Q 005680          343 RLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRH--PHLVAVMGCCSE--LKCIVFEYMPNGNLRDK  418 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~H--pnIV~l~g~~~~--~~~LV~Ey~~ggsL~~~  418 (683)
                      +.+|.|+++.||++...+..++||..........+..|+.++..++|  ++++++++++..  ..+++|||++|+++..+
T Consensus         4 ~~i~~g~~~~v~~~~~~~~~~~iK~~~~~~~~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~~~~~~   83 (155)
T cd05120           4 KLLKGGLTNRVYLLGTKDEDYVLKINPSREKGADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGETLDEV   83 (155)
T ss_pred             eecccccccceEEEEecCCeEEEEecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCeecccC
Confidence            45688999999999998889999998754435678999999999976  588888888765  78999999998766532


Q ss_pred             hhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccccCCCcccc
Q 005680          419 LFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVRSD  498 (683)
Q Consensus       419 L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~~~~t~ksD  498 (683)
                                       +......++.+++.+|.+||.....+++|+|++|.|||++..+.++++|||++...     ..
T Consensus        84 -----------------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~~-----~~  141 (155)
T cd05120          84 -----------------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGYG-----PP  141 (155)
T ss_pred             -----------------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccCC-----Ch
Confidence                             44556678999999999999854457999999999999999899999999998642     23


Q ss_pred             cccHHHHHHHH
Q 005680          499 IRAFGTLLLHL  509 (683)
Q Consensus       499 VwSlGviL~eL  509 (683)
                      .|.++.+++-+
T Consensus       142 ~~d~~~~~~~~  152 (155)
T cd05120         142 AFDLAAALLFN  152 (155)
T ss_pred             HHHHHHHHHHh
Confidence            45566665544

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.57  E-value=7.8e-15  Score=151.16  Aligned_cols=136  Identities=14%  Similarity=0.097  Sum_probs=105.2

Q ss_pred             ccccccccc-cCCceEEEEEEECCeeEEEEEcCCC---------------CCHHHHHHHHHHHHhcCCCCc--cceeccc
Q 005680          338 FSERFRLKC-AGDWTNVYRGRLNHASVAIKTLNNG---------------LSEEDFQAKVSFLTAVRHPHL--VAVMGCC  399 (683)
Q Consensus       338 F~~~~~liG-~G~fG~Vykg~~~g~~VAvK~l~~~---------------~~~~~~~~Ev~iL~~l~HpnI--V~l~g~~  399 (683)
                      |.....++| .||.|+||.+...+..++||.+...               .....+.+|+.++.+|.|++|  +..++++
T Consensus        32 ~~~~~~~lg~~~g~gtv~~v~~~~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~  111 (239)
T PRK01723         32 WQQQARVVGSAKGRGTTWFVQTPGVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAAR  111 (239)
T ss_pred             HhhcCceeecCCCCccEEEEEeCCceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeee
Confidence            333345665 7889999999998999999987421               122467889999999998885  5666654


Q ss_pred             cc------ceeEEEeecCC-CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcc
Q 005680          400 SE------LKCIVFEYMPN-GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSI  472 (683)
Q Consensus       400 ~~------~~~LV~Ey~~g-gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NI  472 (683)
                      ..      ..+|||||++| .+|.+++..           ..++..    .+.+|+.+|.+||.   .||+||||||.||
T Consensus       112 ~~~~~~~~~~~lV~e~l~G~~~L~~~l~~-----------~~l~~~----~~~~i~~~l~~lH~---~GI~HrDlkp~NI  173 (239)
T PRK01723        112 VVRHGLFYRADILIERIEGARDLVALLQE-----------APLSEE----QWQAIGQLIARFHD---AGVYHADLNAHNI  173 (239)
T ss_pred             eeecCcceeeeEEEEecCCCCCHHHHHhc-----------CCCCHH----HHHHHHHHHHHHHH---CCCCCCCCCchhE
Confidence            22      23599999997 689888831           234443    36789999999999   6799999999999


Q ss_pred             cccCCCcEEEecCCCcccc
Q 005680          473 LLDRNLVAKISGLGLNICD  491 (683)
Q Consensus       473 Lld~~~~~KL~DFGla~~~  491 (683)
                      |++.++.++|+|||.+...
T Consensus       174 Lv~~~~~v~LIDfg~~~~~  192 (239)
T PRK01723        174 LLDPDGKFWLIDFDRGELR  192 (239)
T ss_pred             EEcCCCCEEEEECCCcccC
Confidence            9999999999999998653

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.57  E-value=6.4e-15  Score=144.73  Aligned_cols=132  Identities=16%  Similarity=0.189  Sum_probs=94.3

Q ss_pred             cccccCCceEEEEEEE-CCeeEEEEEcCCCCC----HHHH----------------------HHHHHHHHhcCCCC--cc
Q 005680          343 RLKCAGDWTNVYRGRL-NHASVAIKTLNNGLS----EEDF----------------------QAKVSFLTAVRHPH--LV  393 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~-~g~~VAvK~l~~~~~----~~~~----------------------~~Ev~iL~~l~Hpn--IV  393 (683)
                      +++|+|+||.||+|.. +|..||||+++....    ...+                      ..|...+..+.+..  +.
T Consensus         3 ~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~   82 (187)
T cd05119           3 GPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPVP   82 (187)
T ss_pred             cccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCCC
Confidence            4678999999999998 489999999873211    1111                      34566666664433  34


Q ss_pred             ceecccccceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccc
Q 005680          394 AVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSIL  473 (683)
Q Consensus       394 ~l~g~~~~~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NIL  473 (683)
                      +.+++  ...++||||++|+++.......          .... ..+..++.+++.++.++|..  .+|+|+||||+||+
T Consensus        83 ~~~~~--~~~~lv~e~~~g~~~~~~~l~~----------~~~~-~~~~~~~~~~~~~l~~lh~~--~~ivH~Dl~p~Nil  147 (187)
T cd05119          83 KPIDL--NRHVLVMEFIGGDGIPAPRLKD----------VRLL-EDPEELYDQILELMRKLYRE--AGLVHGDLSEYNIL  147 (187)
T ss_pred             ceEec--CCCEEEEEEeCCCCccChhhhh----------hhhc-ccHHHHHHHHHHHHHHHhhc--cCcCcCCCChhhEE
Confidence            44443  3568999999996654322111          0011 56788999999999999982  34999999999999


Q ss_pred             ccCCCcEEEecCCCccc
Q 005680          474 LDRNLVAKISGLGLNIC  490 (683)
Q Consensus       474 ld~~~~~KL~DFGla~~  490 (683)
                      ++ ++.++|+|||.+..
T Consensus       148 i~-~~~~~liDfg~a~~  163 (187)
T cd05119         148 VD-DGKVYIIDVPQAVE  163 (187)
T ss_pred             EE-CCcEEEEECccccc
Confidence            99 89999999999853

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.49  E-value=2.2e-14  Score=166.56  Aligned_cols=179  Identities=23%  Similarity=0.278  Sum_probs=124.1

Q ss_pred             hcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceecccccceeEEEeecCC
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELKCIVFEYMPN  412 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~~~~LV~Ey~~g  412 (683)
                      ..+|.. .+++..|+||.||.+++  +.+++|+|+-+...    +.+-  ++.             +.+..+.|      
T Consensus        82 e~df~~-IklisngAygavylvrh~~trqrfa~kiNkq~l----ilRn--ilt-------------~a~npfvv------  135 (1205)
T KOG0606|consen   82 ESDFNT-IKLISNGAYGAVYLVRHKETRQRFAMKINKQNL----ILRN--ILT-------------FAGNPFVV------  135 (1205)
T ss_pred             ccccce-eEeeccCCCCceeeeeccccccchhhcccccch----hhhc--ccc-------------ccCCccee------
Confidence            356654 47888999999999987  46889995432211    1111  222             23333333      


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+-.+.+          +..++++..        ++.+++|||+   .+|+|||+||+|.||+.-|++|++|||+++.  
T Consensus       136 gDc~tll----------k~~g~lPvd--------mvla~Eylh~---ygivhrdlkpdnllIT~mGhiKlTDfgLsk~GL  194 (1205)
T KOG0606|consen  136 GDCATLL----------KNIGPLPVD--------MVLAVEYLHS---YGIVHRDLKPDNLLITSMGHIKLTDFGLSKKGL  194 (1205)
T ss_pred             chhhhhc----------ccCCCCcch--------hhHHhHhhcc---CCeecCCCCCCcceeeecccccccchhhhhhhh
Confidence            4555555          344455543        2789999999   7799999999999999999999999999853  


Q ss_pred             --------------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHH
Q 005680          491 --------------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQ  532 (683)
Q Consensus       491 --------------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~  532 (683)
                                                            ..|+..+|+|++|+|+|+.+.|..||.....     ...+..
T Consensus       195 ms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVilrqgygkpvdwwamGiIlyeFLVgcvpffGdtp-----eelfg~  269 (1205)
T KOG0606|consen  195 MSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTP-----EELFGQ  269 (1205)
T ss_pred             hhccchhhhcchHHHHHHhhhccccCCccccChhhhhhhccCCCccHHHHHHHHHHHheeeeeccCCCH-----HHHHhh
Confidence                                                  3588999999999999999999999875311     111222


Q ss_pred             HhcCCCCCC---ChhhHHHHHHHHHHhhhcCCCcccccc
Q 005680          533 VLDGNAGIW---PLDLAEELAGIALKCLSADQDANRDLR  568 (683)
Q Consensus       533 ild~~~~~~---p~~~~~~l~~Li~~CL~~dP~p~~RPs  568 (683)
                      ++. ....|   ....++++++++.++|..+  |..|.-
T Consensus       270 vis-d~i~wpE~dea~p~Ea~dli~~LL~qn--p~~Rlg  305 (1205)
T KOG0606|consen  270 VIS-DDIEWPEEDEALPPEAQDLIEQLLRQN--PLCRLG  305 (1205)
T ss_pred             hhh-hhccccccCcCCCHHHHHHHHHHHHhC--hHhhcc
Confidence            221 11222   2356789999999999999  667754

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.37  E-value=2.4e-12  Score=124.03  Aligned_cols=141  Identities=13%  Similarity=0.092  Sum_probs=104.5

Q ss_pred             ccccCCceEEEEEEECCeeEEEEEcCCCC-CHHHHHHHHHHHHhcCCCCcc-ceecccccceeEEEeecCCCCchhhhhh
Q 005680          344 LKCAGDWTNVYRGRLNHASVAIKTLNNGL-SEEDFQAKVSFLTAVRHPHLV-AVMGCCSELKCIVFEYMPNGNLRDKLFT  421 (683)
Q Consensus       344 liG~G~fG~Vykg~~~g~~VAvK~l~~~~-~~~~~~~Ev~iL~~l~HpnIV-~l~g~~~~~~~LV~Ey~~ggsL~~~L~~  421 (683)
                      .+++|.++.||++...+..|++|...... ....+..|+.++..+.+.+++ +++++..+..++||||++|.++.+..  
T Consensus         5 ~l~~G~~~~vy~~~~~~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~~~~~~P~~~~~~~~~~~lv~e~i~G~~l~~~~--   82 (170)
T cd05151           5 PLKGGMTNKNYRVEVANKKYVVRIPGNGTELLINRENEAENSKLAAEAGIGPKLYYFDPETGVLITEFIEGSELLTED--   82 (170)
T ss_pred             ecCCcccCceEEEEECCeEEEEEeCCCCcccccCHHHHHHHHHHHHHhCCCCceEEEeCCCCeEEEEecCCCcccccc--
Confidence            34678899999999999999999986433 234578899999998665544 56665555678999999998876431  


Q ss_pred             cccccccccccccCCHHHHHHHHHHHHhhhhhhccCC--CCcEEeccCCCCcccccCCCcEEEecCCCccccCCCccccc
Q 005680          422 SQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTE--PRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVRSDI  499 (683)
Q Consensus       422 ~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~--~~~IiHrDLKP~NILld~~~~~KL~DFGla~~~~~t~ksDV  499 (683)
                                   .   ....++.+++.+|..||...  +.+++|+|++|.||+++ ++.++++|||.+..+  .+   .
T Consensus        83 -------------~---~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~~--~~---~  140 (170)
T cd05151          83 -------------F---SDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGMN--DP---L  140 (170)
T ss_pred             -------------c---cCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccCC--Ch---H
Confidence                         0   01235678999999999954  23479999999999999 678999999998643  22   3


Q ss_pred             ccHHHHHHH
Q 005680          500 RAFGTLLLH  508 (683)
Q Consensus       500 wSlGviL~e  508 (683)
                      |-||.++.+
T Consensus       141 ~Dla~~~~~  149 (170)
T cd05151         141 FDLANFFSE  149 (170)
T ss_pred             HHHHHHHHh
Confidence            445666544

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.37  E-value=6.7e-12  Score=140.35  Aligned_cols=133  Identities=19%  Similarity=0.225  Sum_probs=94.0

Q ss_pred             cccccCCceEEEEEEE-CCeeEEEEEcCCCCCH------------------------------------------HHHHH
Q 005680          343 RLKCAGDWTNVYRGRL-NHASVAIKTLNNGLSE------------------------------------------EDFQA  379 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~-~g~~VAvK~l~~~~~~------------------------------------------~~~~~  379 (683)
                      +.+|.|++|.||+|++ +|+.||||+.++....                                          -+|.+
T Consensus       123 ~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~~  202 (437)
T TIGR01982       123 KPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLRR  202 (437)
T ss_pred             cceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHHH
Confidence            4578999999999998 7999999998743210                                          02445


Q ss_pred             HHHHHHhcC-----CCCc--cceecccccceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHh-hh
Q 005680          380 KVSFLTAVR-----HPHL--VAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCL-GL  451 (683)
Q Consensus       380 Ev~iL~~l~-----HpnI--V~l~g~~~~~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~-aL  451 (683)
                      |...+.+++     +++|  .+++..+.+..+|||||++|++|.+++...         ...++   ...++..++. .+
T Consensus       203 Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~---------~~~~~---~~~ia~~~~~~~l  270 (437)
T TIGR01982       203 EAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALD---------EAGLD---RKALAENLARSFL  270 (437)
T ss_pred             HHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHH---------hcCCC---HHHHHHHHHHHHH
Confidence            555555552     2332  233332334679999999999999987422         11122   3345666655 46


Q ss_pred             hhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc
Q 005680          452 SFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       452 ~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~  490 (683)
                      ..+|.   .|++|+|++|.||+++.++.++|+|||++..
T Consensus       271 ~ql~~---~g~~H~D~hPgNilv~~~g~i~liDfG~~~~  306 (437)
T TIGR01982       271 NQVLR---DGFFHADLHPGNIFVLKDGKIIALDFGIVGR  306 (437)
T ss_pred             HHHHh---CCceeCCCCcccEEECCCCcEEEEeCCCeeE
Confidence            78888   6699999999999999999999999999854

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=1.7e-12  Score=142.20  Aligned_cols=144  Identities=22%  Similarity=0.273  Sum_probs=109.7

Q ss_pred             ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEE
Q 005680          402 LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAK  481 (683)
Q Consensus       402 ~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~K  481 (683)
                      .+||.|++|.-.+|.++|...       ......++.....++.|++.|+.|      ++.+|+|+||.||+...+..+|
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr-------~~~e~~s~s~~~~~~~q~~~~~~y------k~~ihrdlkp~nif~~~d~q~k  396 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRR-------RTGEERSLSLMLDIFKQIAPAVEY------KGLIHRDLKPSNIFFSDDDQLK  396 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCC-------CcccccchhHHHHHHHhhccchhh------ccchhhhccccccccccchhhh
Confidence            478999999999999999644       345567888899999999999999      4699999999999999999999


Q ss_pred             EecCCCccc-------------------------------cCCCcccccccHHHHHHHHhhC-CCCchhhHHHhhhhHHH
Q 005680          482 ISGLGLNIC-------------------------------DQLNVRSDIRAFGTLLLHLLTG-RNWAGLVEKAMALDQTT  529 (683)
Q Consensus       482 L~DFGla~~-------------------------------~~~t~ksDVwSlGviL~eLltG-~~Pf~~~~~~~~~~~~~  529 (683)
                      |.|||+...                               ..|+.++||||||+||+|+++- ..+|.        ....
T Consensus       397 IgDFgl~ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~e--------r~~t  468 (516)
T KOG1033|consen  397 IGDFGLVTSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFSTQFE--------RIAT  468 (516)
T ss_pred             hhhhhheeecccCCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhccHHH--------HHHh
Confidence            999998632                               4689999999999999999982 11221        1222


Q ss_pred             HHHHhcCCCCCCChhh---HHHHHHHHHHhhhcCCCccccccHHH
Q 005680          530 LMQVLDGNAGIWPLDL---AEELAGIALKCLSADQDANRDLRIAG  571 (683)
Q Consensus       530 ~~~ild~~~~~~p~~~---~~~l~~Li~~CL~~dP~p~~RPs~~e  571 (683)
                      +..+-+   +.+|+..   -+.-..|+.+++.+.  |..||++.+
T Consensus       469 ~~d~r~---g~ip~~~~~d~p~e~~ll~~lls~~--p~~RP~~~~  508 (516)
T KOG1033|consen  469 LTDIRD---GIIPPEFLQDYPEEYTLLQQLLSPS--PEERPSAIE  508 (516)
T ss_pred             hhhhhc---CCCChHHhhcCcHHHHHHHHhcCCC--cccCchHHH
Confidence            233333   3344221   234568999999999  889995443

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.22  E-value=1.8e-10  Score=130.88  Aligned_cols=157  Identities=16%  Similarity=0.169  Sum_probs=100.0

Q ss_pred             cCccccccccccCCceEEEEEEE-C-CeeEEEEEcCCCCC----------------------------H-----------
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL-N-HASVAIKTLNNGLS----------------------------E-----------  374 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~-~-g~~VAvK~l~~~~~----------------------------~-----------  374 (683)
                      ..|+.  +-+|.|++|.||+|++ + |+.||||++++...                            .           
T Consensus       120 ~~fd~--~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l  197 (537)
T PRK04750        120 DDFDI--KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTL  197 (537)
T ss_pred             HhcCh--hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHH
Confidence            34554  4678999999999998 4 89999999974310                            0           


Q ss_pred             ---HHHHHHHHHHHhcC----CCCccceeccc---ccceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHH
Q 005680          375 ---EDFQAKVSFLTAVR----HPHLVAVMGCC---SELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIA  444 (683)
Q Consensus       375 ---~~~~~Ev~iL~~l~----HpnIV~l~g~~---~~~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~  444 (683)
                         -+|.+|+..+.+++    +.+.|.+-.++   ....+|||||++|++|.++-.-....    .....+....+..++
T Consensus       198 ~~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g----~d~~~la~~~v~~~~  273 (537)
T PRK04750        198 HDELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAG----TDMKLLAERGVEVFF  273 (537)
T ss_pred             HHhhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcC----CCHHHHHHHHHHHHH
Confidence               12445555555552    33333333333   33678999999999998753111000    112235555555566


Q ss_pred             HHHHhhhhhhccCCCCcEEeccCCCCcccccCCC----cEEEecCCCccccCCCcccccccHHHHHHHHhh
Q 005680          445 HEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL----VAKISGLGLNICDQLNVRSDIRAFGTLLLHLLT  511 (683)
Q Consensus       445 ~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~----~~KL~DFGla~~~~~t~ksDVwSlGviL~eLlt  511 (683)
                      .||..          .|++|+|+||.||+++.+|    .++++|||++..  . ...|-..|.-+++.++.
T Consensus       274 ~Qif~----------~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~--l-~~~~r~~l~~~~~a~~~  331 (537)
T PRK04750        274 TQVFR----------DGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGS--L-NKEDKRYLAENFLAFFN  331 (537)
T ss_pred             HHHHh----------CCeeeCCCChHHeEEecCCCCCCeEEEEecceEEE--C-CHHHHHHHHHHHHHHHh
Confidence            66653          4599999999999999888    999999999843  2 23334444444444444

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.17  E-value=3.6e-12  Score=147.21  Aligned_cols=213  Identities=18%  Similarity=0.205  Sum_probs=157.8

Q ss_pred             ccccCCceEEEEEEE---CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcC-CCCccceeccccc--ceeEEEeecCCC
Q 005680          344 LKCAGDWTNVYRGRL---NHASVAIKTLNNG----LSEEDFQAKVSFLTAVR-HPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       344 liG~G~fG~Vykg~~---~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~-HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      -+|.|+|+.|-....   ....+|+|.+...    ........|..+-..+. |+|++.+++...+  ..+++++|..||
T Consensus        27 ~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~~~~~~~s~g~  106 (601)
T KOG0590|consen   27 SIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPRSYLLSLSYSDGG  106 (601)
T ss_pred             cccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCccccccccccccccccccCCccCCCcccccccCccccc
Confidence            357999999887776   3456777777622    22344556888878886 9999999999866  778999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhc-cCCCCcEEeccCCCCcccccCCC-cEEEecCCCccc-
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLH-STEPRPIVHGSLTPSSILLDRNL-VAKISGLGLNIC-  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH-~~~~~~IiHrDLKP~NILld~~~-~~KL~DFGla~~-  490 (683)
                      ++.+.+..        ......+...+-.++.|+..+|.|+| .   .++.|+||||+|.+++..+ ..+++|||+|.. 
T Consensus       107 ~~f~~i~~--------~~~~~~~~~~~~~~~~ql~s~l~~~H~~---~~~~h~~ikP~n~~l~~s~~~l~~~df~~At~~  175 (601)
T KOG0590|consen  107 SLFSKISH--------PDSTGTSSSSASRYLPQLNSGLSYLHPE---NGVTHRDIKPSNSLLDESGSALKIADFGLATAY  175 (601)
T ss_pred             cccccccc--------CCccCCCCcchhhhhhhhccCccccCcc---cccccCCCCCccchhccCCCcccCCCchhhccc
Confidence            99998831        22225566677889999999999999 6   6699999999999999999 999999999843 


Q ss_pred             --------------c---------------CCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCC---C
Q 005680          491 --------------D---------------QLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGN---A  538 (683)
Q Consensus       491 --------------~---------------~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~---~  538 (683)
                                    +               ...+..|+||.|+++.-+++|..|+.......    ..........   .
T Consensus       176 ~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~----~~~~~~~~~~~~~~  251 (601)
T KOG0590|consen  176 RNKNGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKD----GRYSSWKSNKGRFT  251 (601)
T ss_pred             cccCCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCcccccccc----ccceeecccccccc
Confidence                          1               23567899999999999999998876432211    1111111111   1


Q ss_pred             CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHH
Q 005680          539 GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVM  573 (683)
Q Consensus       539 ~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl  573 (683)
                      ............+++.+++..+  |..|.+..++-
T Consensus       252 ~~~~~~~~~~~~~~l~k~l~~~--~~~r~s~~~~~  284 (601)
T KOG0590|consen  252 QLPWNSISDQAHDLLHKILKEN--PSNRLSIEELK  284 (601)
T ss_pred             cCccccCChhhhhcccccccCC--chhcccccccc
Confidence            1222356778889999999877  77898866653

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=99.14  E-value=3.9e-10  Score=112.94  Aligned_cols=137  Identities=22%  Similarity=0.273  Sum_probs=105.3

Q ss_pred             cccccCCceEEEEEEECC-eeEEEEEcCCCC---CHHHHHHHHHHHHhcCC--CCccceeccccc-----ceeEEEeecC
Q 005680          343 RLKCAGDWTNVYRGRLNH-ASVAIKTLNNGL---SEEDFQAKVSFLTAVRH--PHLVAVMGCCSE-----LKCIVFEYMP  411 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g-~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~H--pnIV~l~g~~~~-----~~~LV~Ey~~  411 (683)
                      +.++.|.++.||++...+ ..+++|......   ....+..|+.++..+.+  .++.++++++.+     ..++||||++
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i~   83 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERVD   83 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEeC
Confidence            345788899999999854 899999986432   34678999999999975  445677777755     4589999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCC---------------------------------
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTE---------------------------------  458 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~---------------------------------  458 (683)
                      |.+|.+.+.          . ..++......++.+++.+|.+||+..                                 
T Consensus        84 G~~l~~~~~----------~-~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (223)
T cd05154          84 GRVLRDRLL----------R-PELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTD  152 (223)
T ss_pred             CEecCCCCC----------C-CCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhccc
Confidence            998887662          1 34666666777777777777777421                                 


Q ss_pred             --------------------CCcEEeccCCCCcccccC--CCcEEEecCCCccc
Q 005680          459 --------------------PRPIVHGSLTPSSILLDR--NLVAKISGLGLNIC  490 (683)
Q Consensus       459 --------------------~~~IiHrDLKP~NILld~--~~~~KL~DFGla~~  490 (683)
                                          +..++|+|+.|.|||++.  ++.+.|+||+.+..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~  206 (223)
T cd05154         153 EPPAMERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATL  206 (223)
T ss_pred             ccHHHHHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEecccccc
Confidence                                256899999999999998  67789999998854

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>smart00504 Ubox Modified RING finger domain

Probab=99.13  E-value=4.3e-11  Score=97.19  Aligned_cols=63  Identities=49%  Similarity=0.844  Sum_probs=60.1

Q ss_pred             cccccccccccCCCcccCCCcchhhHHHHHHHcCCCCCCCCCccccCCCCCCCcHHHHHHHHHH
Q 005680          611 VFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEW  674 (683)
Q Consensus       611 ~f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN~~lr~~I~~w  674 (683)
                      .+.|||+.++|.+|++++.|++|++++|..|+.. +.+||+|+.+++...++||..||++|++|
T Consensus         1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~   63 (63)
T smart00504        1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW   63 (63)
T ss_pred             CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence            3689999999999999999999999999999976 77999999999999999999999999998

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.12  E-value=6e-11  Score=123.29  Aligned_cols=177  Identities=23%  Similarity=0.285  Sum_probs=127.1

Q ss_pred             HHHHHhcCCCCccceeccccc-------ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhh
Q 005680          381 VSFLTAVRHPHLVAVMGCCSE-------LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSF  453 (683)
Q Consensus       381 v~iL~~l~HpnIV~l~g~~~~-------~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~y  453 (683)
                      ...|-.+.|.|||+++.|+.+       ...++.|||..|+|..+|....      .....+....-.+++.||+.||.|
T Consensus       118 FdnllqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~------~~~~a~~~~~wkkw~tqIlsal~y  191 (458)
T KOG1266|consen  118 FDNLLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTK------KNQKALFQKAWKKWCTQILSALSY  191 (458)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHH------HhhhhhhHHHHHHHHHHHHhhhhh
Confidence            345666789999999999966       3468899999999999997653      355678888888999999999999


Q ss_pred             hccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-----------------------------cCCCcccccccHHH
Q 005680          454 LHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-----------------------------DQLNVRSDIRAFGT  504 (683)
Q Consensus       454 LH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-----------------------------~~~t~ksDVwSlGv  504 (683)
                      ||++. ++|+|+++..+-|++..+|-+||.--.-...                             ...+.++|||+||+
T Consensus       192 Lhs~~-PpiihgnlTc~tifiq~ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgm  270 (458)
T KOG1266|consen  192 LHSCD-PPIIHGNLTCDTIFIQHNGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGM  270 (458)
T ss_pred             hhccC-CccccCCcchhheeecCCceEEecccCccccchhhhhhhHhhhhccccCCccccCCcCcccccccchhhhhhhH
Confidence            99988 7899999999999999999888753211100                             23456899999999


Q ss_pred             HHHHHhhCCCC-chhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          505 LLLHLLTGRNW-AGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       505 iL~eLltG~~P-f~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ..++|..|.-- -......  .........+-...       ...-++++..|++..  |..||+|.+++..
T Consensus       271 cAlemailEiq~tnseS~~--~~ee~ia~~i~~le-------n~lqr~~i~kcl~~e--P~~rp~ar~llfH  331 (458)
T KOG1266|consen  271 CALEMAILEIQSTNSESKV--EVEENIANVIIGLE-------NGLQRGSITKCLEGE--PNGRPDARLLLFH  331 (458)
T ss_pred             HHHHHHHheeccCCCccee--ehhhhhhhheeecc-------CccccCcCcccccCC--CCCCcchhhhhcC
Confidence            99999887532 1110000  11111222211111       112346888999888  8899999988754

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.05  E-value=1.2e-09  Score=109.12  Aligned_cols=131  Identities=12%  Similarity=0.100  Sum_probs=94.3

Q ss_pred             ccccCCceEEEEEEEC--------CeeEEEEEcCCC-----------------------CC-HHHHH----HHHHHHHhc
Q 005680          344 LKCAGDWTNVYRGRLN--------HASVAIKTLNNG-----------------------LS-EEDFQ----AKVSFLTAV  387 (683)
Q Consensus       344 liG~G~fG~Vykg~~~--------g~~VAvK~l~~~-----------------------~~-~~~~~----~Ev~iL~~l  387 (683)
                      .+|.|-=+.||.|...        +..+|||+.+..                       .+ ...+.    +|+..|.++
T Consensus         4 ~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~rl   83 (197)
T cd05146           4 CISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKRM   83 (197)
T ss_pred             ccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            4678888999999863        378999987510                       00 11223    799999998


Q ss_pred             CC--CCccceecccccceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhh-ccCCCCcEEe
Q 005680          388 RH--PHLVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFL-HSTEPRPIVH  464 (683)
Q Consensus       388 ~H--pnIV~l~g~~~~~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yL-H~~~~~~IiH  464 (683)
                      ..  -++...+++  ...+|||||+.++.+....          -....++......+..+++.+|..| |.   .+|||
T Consensus        84 ~~~Gv~vP~pi~~--~~~~lvME~Ig~~~~~~~~----------Lkd~~~~~~~~~~i~~~i~~~l~~l~H~---~glVH  148 (197)
T cd05146          84 QKAGIPCPEVVVL--KKHVLVMSFIGDDQVPAPK----------LKDAKLNDEEMKNAYYQVLSMMKQLYKE---CNLVH  148 (197)
T ss_pred             HHcCCCCCeEEEe--cCCEEEEEEcCCCCccchh----------hhccccCHHHHHHHHHHHHHHHHHHHHh---CCeec
Confidence            53  455566654  5678999999765443221          1122355566677889999999999 78   56999


Q ss_pred             ccCCCCcccccCCCcEEEecCCCccc
Q 005680          465 GSLTPSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       465 rDLKP~NILld~~~~~KL~DFGla~~  490 (683)
                      +||+|.|||++ ++.++|+|||.+..
T Consensus       149 GDLs~~NIL~~-~~~v~iIDF~qav~  173 (197)
T cd05146         149 ADLSEYNMLWH-DGKVWFIDVSQSVE  173 (197)
T ss_pred             CCCCHHHEEEE-CCcEEEEECCCcee
Confidence            99999999996 46899999998754

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.05  E-value=9.5e-10  Score=107.22  Aligned_cols=136  Identities=24%  Similarity=0.252  Sum_probs=102.1

Q ss_pred             ccccCCceEEEEEEECCeeEEEEEcC-CCC---------CHHHHHHHHHHHHhcCC--CCccceecccccceeEEEeecC
Q 005680          344 LKCAGDWTNVYRGRLNHASVAIKTLN-NGL---------SEEDFQAKVSFLTAVRH--PHLVAVMGCCSELKCIVFEYMP  411 (683)
Q Consensus       344 liG~G~fG~Vykg~~~g~~VAvK~l~-~~~---------~~~~~~~Ev~iL~~l~H--pnIV~l~g~~~~~~~LV~Ey~~  411 (683)
                      ++++|+=+.||.+.+-|.++++|.-. +..         ....-.+|+.++.+++-  -+...++.+..+...|+|||++
T Consensus         3 ~i~~GAEa~i~~~~~~g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me~I~   82 (204)
T COG3642           3 LIKQGAEAIIYLTDFLGLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVMEYIE   82 (204)
T ss_pred             hhhCCcceeEEeeeccCcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEEEeC
Confidence            56789999999998888788887643 111         12356789999998853  3444566666678889999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCcccc
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICD  491 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~~  491 (683)
                      |..|.+.|.          ..       ...++..|-.-+.-||.   .+|||+||.++||++..+. +.++||||+...
T Consensus        83 G~~lkd~l~----------~~-------~~~~~r~vG~~vg~lH~---~givHGDLTtsNiIl~~~~-i~~IDfGLg~~s  141 (204)
T COG3642          83 GELLKDALE----------EA-------RPDLLREVGRLVGKLHK---AGIVHGDLTTSNIILSGGR-IYFIDFGLGEFS  141 (204)
T ss_pred             ChhHHHHHH----------hc-------chHHHHHHHHHHHHHHh---cCeecCCCccceEEEeCCc-EEEEECCccccc
Confidence            999998883          21       24567778888889999   5599999999999997665 999999998752


Q ss_pred             --CCCcccccc
Q 005680          492 --QLNVRSDIR  500 (683)
Q Consensus       492 --~~t~ksDVw  500 (683)
                        .-+.++|+|
T Consensus       142 ~~~Ed~aVDl~  152 (204)
T COG3642         142 DEVEDKAVDLH  152 (204)
T ss_pred             ccHHhhhchHH
Confidence              224566766

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.00  E-value=1.2e-09  Score=106.17  Aligned_cols=151  Identities=19%  Similarity=0.217  Sum_probs=107.8

Q ss_pred             cccccccCCceEEEEEEECCeeEEEEEcCC-C---------CCHHHHHHHHHHHHhcCCCCccceeccc--ccceeEEEe
Q 005680          341 RFRLKCAGDWTNVYRGRLNHASVAIKTLNN-G---------LSEEDFQAKVSFLTAVRHPHLVAVMGCC--SELKCIVFE  408 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~~g~~VAvK~l~~-~---------~~~~~~~~Ev~iL~~l~HpnIV~l~g~~--~~~~~LV~E  408 (683)
                      ...++-+|+-+.|++|.+.|+...||.-.. .         ....+..+|+.+|.+++--.|.--.-++  ...-.|+||
T Consensus        11 ~l~likQGAEArv~~~~~~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~ME   90 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSFSGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIYME   90 (229)
T ss_pred             cceeeeccceeeEeeeccCCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEEEE
Confidence            456777899999999999999988886431 1         1235677899999998643432222222  236689999


Q ss_pred             ecCC-CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCC---cEEEec
Q 005680          409 YMPN-GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL---VAKISG  484 (683)
Q Consensus       409 y~~g-gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~---~~KL~D  484 (683)
                      |++| .++.+++...       ... .........++..|-..+.-||.   .+|||+||..+||+|..++   .+.++|
T Consensus        91 ~~~g~~~vk~~i~~~-------~~~-~~~d~~~~~~~~~iG~~igklH~---ndiiHGDLTTSNill~~~~~~~~~~lId  159 (229)
T KOG3087|consen   91 FIDGASTVKDFILST-------MED-ESEDEGLAELARRIGELIGKLHD---NDIIHGDLTTSNILLRSDGNQITPILID  159 (229)
T ss_pred             eccchhHHHHHHHHH-------ccC-cccchhHHHHHHHHHHHHHHhhh---CCeecccccccceEEecCCCcCceEEEe
Confidence            9986 4788888544       122 22223336788889999999999   5599999999999996654   468999


Q ss_pred             CCCcccc--CCCcccccccH
Q 005680          485 LGLNICD--QLNVRSDIRAF  502 (683)
Q Consensus       485 FGla~~~--~~t~ksDVwSl  502 (683)
                      ||++...  .-+..+|+|=|
T Consensus       160 fgls~~s~~~EDKgVDLYVl  179 (229)
T KOG3087|consen  160 FGLSSVSRLPEDKGVDLYVL  179 (229)
T ss_pred             ecchhcccCcccccceeeee
Confidence            9998663  33567888844

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.99  E-value=3.4e-09  Score=116.27  Aligned_cols=161  Identities=21%  Similarity=0.244  Sum_probs=125.8

Q ss_pred             eEEEEEEE--CCeeEEEEEcCCC--CCHHHHHHHHHHHHhcCCCCccceeccccc------ceeEEEeecCC-CCchhhh
Q 005680          351 TNVYRGRL--NHASVAIKTLNNG--LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE------LKCIVFEYMPN-GNLRDKL  419 (683)
Q Consensus       351 G~Vykg~~--~g~~VAvK~l~~~--~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~------~~~LV~Ey~~g-gsL~~~L  419 (683)
                      .+-|++..  +|..|++|+++..  ........-+++++++.|+|||++..++..      .+++||+|+|+ ++|.++.
T Consensus       290 ~Ttyk~~s~~DG~~YvLkRlhg~r~~~~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~d~~  369 (655)
T KOG3741|consen  290 ITTYKATSNVDGNAYVLKRLHGDRDQSTNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLYDLY  369 (655)
T ss_pred             ceeEeeeeccCCceeeeeeeccccccCcccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCchHHHHH
Confidence            56899987  8999999999632  222334456789999999999999988752      67899999986 6788877


Q ss_pred             hhccccc-----ccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccccCCC
Q 005680          420 FTSQRNY-----KNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLN  494 (683)
Q Consensus       420 ~~~~~~~-----~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~~~~t  494 (683)
                      +......     ........+++...|.|+.|+..||.++|+.   |+.-+-|.|.+||++.+.+++|+..|+...-..+
T Consensus       370 F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHss---GLAck~L~~~kIlv~G~~RIriS~C~i~Dvl~~d  446 (655)
T KOG3741|consen  370 FANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSS---GLACKTLDLKKILVTGKMRIRISGCGIMDVLQED  446 (655)
T ss_pred             ccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhc---CceeecccHhHeEeeCcceEEEecccceeeecCC
Confidence            6543221     0013445688999999999999999999994   5888999999999999999999988876542222


Q ss_pred             --------cccccccHHHHHHHHhhCCC
Q 005680          495 --------VRSDIRAFGTLLLHLLTGRN  514 (683)
Q Consensus       495 --------~ksDVwSlGviL~eLltG~~  514 (683)
                              .+-|.-.||.+++-|.||..
T Consensus       447 ~~~~le~~Qq~D~~~lG~ll~aLAt~~~  474 (655)
T KOG3741|consen  447 PTEPLESQQQNDLRDLGLLLLALATGTE  474 (655)
T ss_pred             CCcchhHHhhhhHHHHHHHHHHHhhccc
Confidence                    36799999999999999953

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.97  E-value=3.3e-10  Score=126.41  Aligned_cols=222  Identities=18%  Similarity=0.212  Sum_probs=159.1

Q ss_pred             HhhcCccccccccccCCceEEEEEEE---CCeeEEEEEcCCCC----CHHHHHHHHHHHHhc-CCCCccceeccccc--c
Q 005680          333 LATEDFSERFRLKCAGDWTNVYRGRL---NHASVAIKTLNNGL----SEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--L  402 (683)
Q Consensus       333 ~at~~F~~~~~liG~G~fG~Vykg~~---~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~  402 (683)
                      .-+.+|..... +|.|.|+.||.+..   ++..|++|.+....    +...-..|+.+...+ .|.+++.++..+..  .
T Consensus       262 ~~~~df~~v~~-i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~  340 (524)
T KOG0601|consen  262 CKLTDFGLVSK-ISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQ  340 (524)
T ss_pred             eecCCcceeEE-ccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCcccccc
Confidence            34456766644 46788999998776   57889999876322    112234567666666 58888887766644  7


Q ss_pred             eeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC-CcEE
Q 005680          403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN-LVAK  481 (683)
Q Consensus       403 ~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~-~~~K  481 (683)
                      .||--|||.++++...+.          -...+....++++..|++.++.++|+   +.++|+|+||+||++..+ +..+
T Consensus       341 ~~ip~e~~~~~s~~l~~~----------~~~~~d~~~~~~~~~q~~~~l~~i~s---~~~~~~d~~psni~i~~~~~~~~  407 (524)
T KOG0601|consen  341 GYIPLEFCEGGSSSLRSV----------TSQMLDEDPRLRLTAQILTALNVIHS---KLFVHLDVKPSNILISNDGFFSK  407 (524)
T ss_pred             ccCchhhhcCcchhhhhH----------HHHhcCcchhhhhHHHHHhccccccc---hhhhcccccccceeeccchhhhh
Confidence            789999999999888772          33557788889999999999999999   889999999999999886 8889


Q ss_pred             EecCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCC
Q 005680          482 ISGLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGN  537 (683)
Q Consensus       482 L~DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~  537 (683)
                      ++|||+...                        ..+..+.|+||||..+.+.++|.+--..        ......+..+.
T Consensus       408 ~~~~~~~t~~~~~~~~~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~--------~~~~~~i~~~~  479 (524)
T KOG0601|consen  408 LGDFGCWTRLAFSSGVFHHIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPLSES--------GVQSLTIRSGD  479 (524)
T ss_pred             ccccccccccceecccccccccccccchhhccccccccccccccccccccccccCcccCcc--------cccceeeeccc
Confidence            999998742                        2356789999999999999999752211        00011111122


Q ss_pred             CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          538 AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       538 ~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                      .+.. +.....+..+...++..+  +..||.+.++....+..
T Consensus       480 ~p~~-~~~~~~~q~~~kv~~~~~--~~~~~l~~~l~~~~~~~  518 (524)
T KOG0601|consen  480 TPNL-PGLKLQLQVLLKVMINPD--RKRRPSAVELSLHSEFY  518 (524)
T ss_pred             ccCC-CchHHhhhhhhhhhcCCc--cccchhhhhhcccchhh
Confidence            2222 234477888888888777  77889877766555443

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=98.95  E-value=4.7e-09  Score=118.52  Aligned_cols=137  Identities=22%  Similarity=0.268  Sum_probs=110.0

Q ss_pred             CCeeEEEEEcCCCCC--HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCchhhhhhccccccccccccc
Q 005680          359 NHASVAIKTLNNGLS--EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARA  434 (683)
Q Consensus       359 ~g~~VAvK~l~~~~~--~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~  434 (683)
                      ++.+|.|........  .....+-+.-|+.++||||++++..+..  ..|||+|-+.  .|..++..             
T Consensus        36 ~~~~vsVF~~~~~~~~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~--Pl~~~lk~-------------  100 (690)
T KOG1243|consen   36 DGGPVSVFVYKRSNGEVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVR--PLETVLKE-------------  100 (690)
T ss_pred             cCCceEEEEEeCCCchhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeeccc--cHHHHHHH-------------
Confidence            678888888763333  3557788899999999999999999866  6799999984  68888732             


Q ss_pred             CCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----c-----------CCCc----
Q 005680          435 LRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----D-----------QLNV----  495 (683)
Q Consensus       435 L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----~-----------~~t~----  495 (683)
                      ++.....-.+.||+.||.|||..  .+++|++|.-+.|+++..|..||++|.++..    .           ...+    
T Consensus       101 l~~~~v~~Gl~qIl~AL~FL~~d--~~lvHgNv~~~SVfVn~~GeWkLggle~v~~~~~~~~~~~~~~~~~s~~~P~~~~  178 (690)
T KOG1243|consen  101 LGKEEVCLGLFQILAALSFLNDD--CNLVHGNVCKDSVFVNESGEWKLGGLELVSKASGFNAPAKSLYLIESFDDPEEID  178 (690)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcc--CCeeeccEeeeeEEEcCCCcEEEeeeEEEeccccCCcccccchhhhcccChhhcC
Confidence            23555666789999999999864  3699999999999999999999999987632    0           1111    


Q ss_pred             ----ccccccHHHHHHHHhhC
Q 005680          496 ----RSDIRAFGTLLLHLLTG  512 (683)
Q Consensus       496 ----ksDVwSlGviL~eLltG  512 (683)
                          ..|.|-|||++++++.|
T Consensus       179 ~s~~s~D~~~Lg~li~el~ng  199 (690)
T KOG1243|consen  179 PSEWSIDSWGLGCLIEELFNG  199 (690)
T ss_pred             ccccchhhhhHHHHHHHHhCc
Confidence                24999999999999999

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.86  E-value=2.3e-09  Score=119.80  Aligned_cols=214  Identities=19%  Similarity=0.178  Sum_probs=149.6

Q ss_pred             cccc--CCceEEEEEEE----CCeeEEEEEcC----CCCCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEEeec
Q 005680          344 LKCA--GDWTNVYRGRL----NHASVAIKTLN----NGLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVFEYM  410 (683)
Q Consensus       344 liG~--G~fG~Vykg~~----~g~~VAvK~l~----~~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~Ey~  410 (683)
                      -+|.  |.+|.||.+..    ++..+|+|.-+    .......=.+|+....++ .|+|.|+.+..+.+  ..++-+|+|
T Consensus       121 ~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~~~lfiqtE~~  200 (524)
T KOG0601|consen  121 RTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEGSGILFIQTELC  200 (524)
T ss_pred             ccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCcccccCCcceeeeccc
Confidence            3467  99999999876    46889999844    223333445677777777 49999998888766  677888888


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHh----hhhhhccCCCCcEEeccCCCCcccccCC-CcEEEecC
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCL----GLSFLHSTEPRPIVHGSLTPSSILLDRN-LVAKISGL  485 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~----aL~yLH~~~~~~IiHrDLKP~NILld~~-~~~KL~DF  485 (683)
                      . .+|..+...         ....++....+.++.+...    ||.++|+   .+++|-|+||.||++..+ ...+++||
T Consensus       201 ~-~sl~~~~~~---------~~~~~p~~~l~~~~~~~~~~~~~al~~~hs---~~~~~~~~kp~~i~~~~~~~s~~~~df  267 (524)
T KOG0601|consen  201 G-ESLQSYCHT---------PCNFLPDNLLWNSLRDWLSRDVTALSHLHS---NNIVHDDLKPANIFTTSDWTSCKLTDF  267 (524)
T ss_pred             c-chhHHhhhc---------ccccCCchhhhhHHhhhhhcccccccccCC---CcccccccchhheecccccceeecCCc
Confidence            5 788888742         3334666677777777777    9999999   669999999999999998 88999999


Q ss_pred             CCccc-----------------------------cCCCcccccccHHHHHHHHhhCCCCchhh--HHHhhhhHHHHHHHh
Q 005680          486 GLNIC-----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLV--EKAMALDQTTLMQVL  534 (683)
Q Consensus       486 Gla~~-----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~--~~~~~~~~~~~~~il  534 (683)
                      |+...                             +-++..+|+||+|.++++..+|..++...  ..........     
T Consensus       268 ~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~~~-----  342 (524)
T KOG0601|consen  268 GLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQGY-----  342 (524)
T ss_pred             ceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCcccccccc-----
Confidence            97532                             34678999999999999999987544321  1000011100     


Q ss_pred             cCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          535 DGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       535 d~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                        ...++-...+..+...+..++..+  +..|++ .+++..|.-|.
T Consensus       343 --ip~e~~~~~s~~l~~~~~~~~d~~--~~~~~~-~q~~~~l~~i~  383 (524)
T KOG0601|consen  343 --IPLEFCEGGSSSLRSVTSQMLDED--PRLRLT-AQILTALNVIH  383 (524)
T ss_pred             --CchhhhcCcchhhhhHHHHhcCcc--hhhhhH-HHHHhcccccc
Confidence              011111123455666888888877  888998 44555554443

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.77  E-value=4.6e-08  Score=102.57  Aligned_cols=147  Identities=12%  Similarity=0.003  Sum_probs=101.8

Q ss_pred             eEEEEEEECCeeEEEEEcCCCCC-------------HHHHHHHHHHHHhcCCCCc--cceecccc-------cceeEEEe
Q 005680          351 TNVYRGRLNHASVAIKTLNNGLS-------------EEDFQAKVSFLTAVRHPHL--VAVMGCCS-------ELKCIVFE  408 (683)
Q Consensus       351 G~Vykg~~~g~~VAvK~l~~~~~-------------~~~~~~Ev~iL~~l~HpnI--V~l~g~~~-------~~~~LV~E  408 (683)
                      ..|+++.+.|+.|.||.......             ...+.+|...+.++..-+|  ...+++..       ...+||||
T Consensus        36 rrvvr~~~~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~~~~s~LVte  115 (268)
T PRK15123         36 RRTLRFELAGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVAFGERGSNPATRTSFIITE  115 (268)
T ss_pred             ceEEEEEECCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCccceeEEEEe
Confidence            45778888999999997652221             1147899999988843333  23333332       14689999


Q ss_pred             ecCCC-CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC-------CCcE
Q 005680          409 YMPNG-NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR-------NLVA  480 (683)
Q Consensus       409 y~~gg-sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~-------~~~~  480 (683)
                      ++++. +|.+++...        .....+...+..++.+++..+.-||.   .||+|+|++|+|||++.       ++.+
T Consensus       116 ~l~~~~sL~~~~~~~--------~~~~~~~~~~~~ll~~la~~i~~LH~---~Gi~HgDL~~~NiLl~~~~~~~~~~~~~  184 (268)
T PRK15123        116 DLAPTISLEDYCADW--------ATNPPDPRLKRMLIKRVATMVRDMHA---AGINHRDCYICHFLLHLPFPGREEDLKL  184 (268)
T ss_pred             eCCCCccHHHHHHhh--------cccCCCHHHHHHHHHHHHHHHHHHHH---CcCccCCCChhhEEEeccccCCCCCceE
Confidence            99976 899988421        12344566778899999999999999   66999999999999975       4789


Q ss_pred             EEecCCCcccc-CCCcccccccHHHHHHH
Q 005680          481 KISGLGLNICD-QLNVRSDIRAFGTLLLH  508 (683)
Q Consensus       481 KL~DFGla~~~-~~t~ksDVwSlGviL~e  508 (683)
                      .|+||+.+... ....+.-+.-++.+++.
T Consensus       185 ~LIDl~r~~~~~~~~~~~r~~dL~~L~~s  213 (268)
T PRK15123        185 SVIDLHRAQIRARVPRRWRDKDLAGLYFS  213 (268)
T ss_pred             EEEECCcccccCCCChHHHHHHHHHHHHH
Confidence            99999988542 22233223444544433

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=98.73  E-value=3.7e-09  Score=123.85  Aligned_cols=206  Identities=19%  Similarity=0.206  Sum_probs=148.9

Q ss_pred             ccccCCceEEEEEEE--CCeeEEEEEcC-----CCCCHHHHHHHHHHHHhcCCCCccceecc--cccceeEEEeecCCCC
Q 005680          344 LKCAGDWTNVYRGRL--NHASVAIKTLN-----NGLSEEDFQAKVSFLTAVRHPHLVAVMGC--CSELKCIVFEYMPNGN  414 (683)
Q Consensus       344 liG~G~fG~Vykg~~--~g~~VAvK~l~-----~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~--~~~~~~LV~Ey~~ggs  414 (683)
                      -+.+|+++.++...-  .|...++|+..     .....+....+-.++-..+||-++.....  |....+||++|+.|++
T Consensus       811 p~qS~sp~ss~p~~pa~sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~p~~P~v~~~~~s~~~rsP~~L~~~~~~~~~  890 (1205)
T KOG0606|consen  811 PSQSGSPSSSFPASPAGSGHTRPSKVHGLAPKIRTNDYESIRSKSNILITPRSPAVVRSFPSFPCRSPLPLVGHYLNGGD  890 (1205)
T ss_pred             cccCCCCcccccCCccccccccchhhhccchhhccccccccCCccCccccCCCCceecccCCCCCCCCcchhhHHhccCC
Confidence            556788998887765  34445555443     11122344445555555567888877665  4558999999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |...|+          ..+.++..-...++..+..+++|||+   ..++|+|++|.|+|+..+|+.+++|||+...    
T Consensus       891 ~~Skl~----------~~~~~saepaRs~i~~~vqs~e~L~s---~~r~h~~~~p~~~l~~~~gh~~l~~~~t~~~vg~~  957 (1205)
T KOG0606|consen  891 LPSKLH----------NSGCLSAEPARSPILERVQSLESLHS---SLRKHRDLKPDSLLIAYDGHRPLTDFGTLSKVGLI  957 (1205)
T ss_pred             chhhhh----------cCCCcccccccchhHHHHhhhhcccc---chhhcccccccchhhcccCCcccCccccccccccc
Confidence            999995          33456666667788899999999999   5599999999999999999999999984311    


Q ss_pred             ----------------------------------------------------cCCCcccccccHHHHHHHHhhCCCCchh
Q 005680          491 ----------------------------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGL  518 (683)
Q Consensus       491 ----------------------------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~  518 (683)
                                                                          ...+..+|+|++|+++++.++|.+||..
T Consensus       958 ~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~pp~na 1037 (1205)
T KOG0606|consen  958 PPTTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGIPPFNA 1037 (1205)
T ss_pred             cCcCCcccccccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCCCCCCC
Confidence                                                                1235678999999999999999999975


Q ss_pred             hHHHhhhhHHHHHHHhcCCCCCC---ChhhHHHHHHHHHHhhhcCCCccccccHH
Q 005680          519 VEKAMALDQTTLMQVLDGNAGIW---PLDLAEELAGIALKCLSADQDANRDLRIA  570 (683)
Q Consensus       519 ~~~~~~~~~~~~~~ild~~~~~~---p~~~~~~l~~Li~~CL~~dP~p~~RPs~~  570 (683)
                      ...     +..+..++.. ...|   |...+....+++...+..+  |.+|..+.
T Consensus      1038 ~tp-----q~~f~ni~~~-~~~~p~g~~~~s~~aq~~~~~ll~~~--~~qr~~a~ 1084 (1205)
T KOG0606|consen 1038 ETP-----QQIFENILNR-DIPWPEGPEEGSYEAQDLINRLLTEE--PTQRLGAK 1084 (1205)
T ss_pred             cch-----hhhhhccccC-CCCCCCCccccChhhhhhhhhhhccC--chhccCcc
Confidence            332     2223333332 2233   4457789999999999999  66777654

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=1.4e-08  Score=101.57  Aligned_cols=78  Identities=24%  Similarity=0.405  Sum_probs=74.6

Q ss_pred             CCCCCccccccccccccCCCcccCCCcchhhHHHHHHHcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHhhcCCCC
Q 005680          605 SNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNKQSSVH  682 (683)
Q Consensus       605 ss~~Ps~f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN~~lr~~I~~w~~~~~~~~  682 (683)
                      ...+|....|.|+.++|.+||+.+.|+||+|..|.+++..-+..+|+|+.+|+..+++||.+|+-.|+.|+..|.|+-
T Consensus       205 ~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~~  282 (284)
T KOG4642|consen  205 KREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWAD  282 (284)
T ss_pred             cccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhccccc
Confidence            568999999999999999999999999999999999998888899999999999999999999999999999999974

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.67  E-value=8.6e-08  Score=95.26  Aligned_cols=121  Identities=23%  Similarity=0.244  Sum_probs=79.2

Q ss_pred             EEEEEEE-CCeeEEEEEcCCC---------------C--------C-----HHHHHHHHHHHHhcCCC--Cccceecccc
Q 005680          352 NVYRGRL-NHASVAIKTLNNG---------------L--------S-----EEDFQAKVSFLTAVRHP--HLVAVMGCCS  400 (683)
Q Consensus       352 ~Vykg~~-~g~~VAvK~l~~~---------------~--------~-----~~~~~~Ev~iL~~l~Hp--nIV~l~g~~~  400 (683)
                      .||.|.. +|..||||+.+..               .        .     .....+|...|.++..-  ++.+.+++  
T Consensus         1 ~Vy~~~~~~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p~~~--   78 (188)
T PF01163_consen    1 DVYHAIDPDGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKPYDY--   78 (188)
T ss_dssp             EEEEEEECTTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--EEEE--
T ss_pred             CEEEEECCCCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcEEEE--
Confidence            4899998 7899999987511               0        0     12467899999999765  45555544  


Q ss_pred             cceeEEEeecC--CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhh-hccCCCCcEEeccCCCCcccccCC
Q 005680          401 ELKCIVFEYMP--NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSF-LHSTEPRPIVHGSLTPSSILLDRN  477 (683)
Q Consensus       401 ~~~~LV~Ey~~--ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~y-LH~~~~~~IiHrDLKP~NILld~~  477 (683)
                      +..+|||||++  |..+..+. ..           .++......++.+++..+.. +|.   .||||+||.+.|||++.+
T Consensus        79 ~~~~ivME~I~~~G~~~~~l~-~~-----------~~~~~~~~~~~~~il~~~~~~~~~---~givHGDLs~~NIlv~~~  143 (188)
T PF01163_consen   79 NRNVIVMEYIGEDGVPLPRLK-DV-----------DLSPEEPKELLEEILEEIIKMLHK---AGIVHGDLSEYNILVDDG  143 (188)
T ss_dssp             ETTEEEEE--EETTEEGGCHH-HC-----------GGGGSTHHHHHHHHHHHHHHHHHC---TTEEESS-STTSEEEETT
T ss_pred             eCCEEEEEecCCCccchhhHH-hc-----------cccchhHHHHHHHHHHHHHHHHHh---cCceecCCChhhEEeecc
Confidence            35579999998  65554433 11           11133445677788776555 568   569999999999999877


Q ss_pred             CcEEEecCCCccc
Q 005680          478 LVAKISGLGLNIC  490 (683)
Q Consensus       478 ~~~KL~DFGla~~  490 (683)
                       .+.|+|||.+..
T Consensus       144 -~~~iIDf~qav~  155 (188)
T PF01163_consen  144 -KVYIIDFGQAVD  155 (188)
T ss_dssp             -CEEE--GTTEEE
T ss_pred             -eEEEEecCccee
Confidence             999999998754

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.55  E-value=6.4e-07  Score=101.61  Aligned_cols=134  Identities=15%  Similarity=0.184  Sum_probs=87.3

Q ss_pred             cccccCCceEEEEEEE-CCeeEEEEEcCCCCCH------------------------------------------HHHHH
Q 005680          343 RLKCAGDWTNVYRGRL-NHASVAIKTLNNGLSE------------------------------------------EDFQA  379 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~-~g~~VAvK~l~~~~~~------------------------------------------~~~~~  379 (683)
                      .-++.++-|.||+|++ +|+.||||+.+++...                                          -++.+
T Consensus       131 ~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~~  210 (517)
T COG0661         131 EPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYRR  210 (517)
T ss_pred             CchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhCHHH
Confidence            4567899999999999 5999999998733210                                          02445


Q ss_pred             HHHHHHhcC-----CCCc--cceecccccceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhh
Q 005680          380 KVSFLTAVR-----HPHL--VAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLS  452 (683)
Q Consensus       380 Ev~iL~~l~-----HpnI--V~l~g~~~~~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~  452 (683)
                      |...+.+++     .|+|  .++|--+.....|+|||++|..+.+...-.         ...++...+.....++.--.-
T Consensus       211 EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~---------~~g~d~k~ia~~~~~~f~~q~  281 (517)
T COG0661         211 EAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALK---------SAGIDRKELAELLVRAFLRQL  281 (517)
T ss_pred             HHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHHHHH---------hcCCCHHHHHHHHHHHHHHHH
Confidence            555555552     2332  122222234678999999999999985322         133443332222222222222


Q ss_pred             hhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc
Q 005680          453 FLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       453 yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~  490 (683)
                      +-|     |++|.|..|.||+++.+|.+.+.|||+...
T Consensus       282 ~~d-----gffHaDpHpGNi~v~~~g~i~~lDfGi~g~  314 (517)
T COG0661         282 LRD-----GFFHADPHPGNILVRSDGRIVLLDFGIVGR  314 (517)
T ss_pred             Hhc-----CccccCCCccceEEecCCcEEEEcCcceec
Confidence            233     499999999999999999999999998743

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.45  E-value=3.8e-06  Score=90.77  Aligned_cols=233  Identities=16%  Similarity=0.162  Sum_probs=145.4

Q ss_pred             cccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCCccc--------eeccccc-ceeEEEeecCC
Q 005680          343 RLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAV-RHPHLVA--------VMGCCSE-LKCIVFEYMPN  412 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l-~HpnIV~--------l~g~~~~-~~~LV~Ey~~g  412 (683)
                      +-+|+|+-+.+|-.-.-+..| .|+.+...-... ..-+..|... .||-+-.        ++|--.. ..-+.|..++|
T Consensus        17 r~LgqGgea~ly~l~e~~d~V-AKIYh~Pppa~~-aqk~a~la~~p~~p~~~~rvaWPqa~L~G~~~~~~iGflmP~v~g   94 (637)
T COG4248          17 RPLGQGGEADLYTLGEVRDQV-AKIYHAPPPAAQ-AQKVAELAATPDAPLLNYRVAWPQATLHGGRRGKVIGFLMPKVSG   94 (637)
T ss_pred             ccccCCccceeeecchhhchh-heeecCCCchHH-HHHHHHhccCCCCcchhhhhcccHHHhhCCCccceeEEecccCCC
Confidence            445889999998643322333 466652221111 1223334444 5664432        2232222 24577887776


Q ss_pred             CC-chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC---Cc
Q 005680          413 GN-LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG---LN  488 (683)
Q Consensus       413 gs-L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG---la  488 (683)
                      .- +.+++....+    ....+...|...++.+..++.+.+-||.+   |.+-+|+.++|+|+++++.+.|.|-.   +.
T Consensus        95 ~~pI~~~y~p~tR----Rqs~P~~~w~fllrvaRnlA~aFA~lH~~---Gh~vGDVn~~~~lVsd~~~V~LVdsDsfqi~  167 (637)
T COG4248          95 KEPIHMIYSPATR----RQSYPHCAWDFLLRVARNLASAFATLHEH---GHVVGDVNQNSFLVSDDSKVVLVDSDSFQIN  167 (637)
T ss_pred             ccchhhhcCchhh----cccCCccccHHHHHHHHHHHHHHHHHHhc---CCcccccCccceeeecCceEEEEcccceeec
Confidence            42 2333322211    13556789999999999999999999994   58899999999999999888887632   21


Q ss_pred             -------------cc-------------cCCCcccccccHHHHHHHHhhC-CCCchhhHHHhh----hh----HHHHHHH
Q 005680          489 -------------IC-------------DQLNVRSDIRAFGTLLLHLLTG-RNWAGLVEKAMA----LD----QTTLMQV  533 (683)
Q Consensus       489 -------------~~-------------~~~t~ksDVwSlGviL~eLltG-~~Pf~~~~~~~~----~~----~~~~~~i  533 (683)
                                   .+             ..-+...|.|.|||++++++.| +.||..+.....    .+    ...+...
T Consensus       168 ~ng~~~~cpVg~~eftPPElQ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~~~~~ap~p~E~~Ia~g~f~ya  247 (637)
T COG4248         168 ANGTLHLCPVGVSEFTPPELQTLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGIPLISDAPNPLETDIAHGRFAYA  247 (637)
T ss_pred             cCCceEecccCccccCCHHHhccccccccCCCccccchhHHHHHHHHHhcCCCCCCcccccCCCCCcchhhhhcceeeec
Confidence                         10             1345789999999999999996 899865332100    00    1111111


Q ss_pred             hc------CCCCCCCh-hhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhcc
Q 005680          534 LD------GNAGIWPL-DLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKAD  584 (683)
Q Consensus       534 ld------~~~~~~p~-~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~~  584 (683)
                      -+      +....+|. -+++.+..|..+|+..--.+..|||+..-+..|..++....
T Consensus       248 ~~~~~g~~p~P~~~P~~~Lpp~vqAlF~qaF~~~~~~~~RP~a~aW~aAl~al~~~L~  305 (637)
T COG4248         248 SDQRRGLKPPPRSIPLSMLPPDVQALFQQAFTESGVATPRPTAKAWVAALDALRQQLK  305 (637)
T ss_pred             hhccCCCCCCCCCCChhhcCHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHHHHhhh
Confidence            11      12233443 36788999999999875446789999999999888876543

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.43  E-value=4.9e-07  Score=91.12  Aligned_cols=121  Identities=22%  Similarity=0.190  Sum_probs=88.7

Q ss_pred             ECCeeEEEEEcCC---------CCCHHHHHHHHHHHHhcCCCC--ccceeccccc------ceeEEEeecCCC-Cchhhh
Q 005680          358 LNHASVAIKTLNN---------GLSEEDFQAKVSFLTAVRHPH--LVAVMGCCSE------LKCIVFEYMPNG-NLRDKL  419 (683)
Q Consensus       358 ~~g~~VAvK~l~~---------~~~~~~~~~Ev~iL~~l~Hpn--IV~l~g~~~~------~~~LV~Ey~~gg-sL~~~L  419 (683)
                      ..++.+-+|.+..         ........+|...+..|..-.  +.+.+++...      ..+||+|++++. +|.+++
T Consensus        30 ~~~~~y~~k~~~~~~~~~~~~~~~~~~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~  109 (206)
T PF06293_consen   30 LVGRRYYRKRLWNKLRRDRLRFPLRRSRAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLL  109 (206)
T ss_pred             ccceEEEECCeechhccchhhhcccchHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHH
Confidence            3456666665321         123456888998888885333  3344444432      358999999974 799998


Q ss_pred             hhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCC---cEEEecCCCcccc
Q 005680          420 FTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL---VAKISGLGLNICD  491 (683)
Q Consensus       420 ~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~---~~KL~DFGla~~~  491 (683)
                      ..          ...++......++.+++..+.-||.   .||+|+|++|.|||++.++   .+.|+||+.++..
T Consensus       110 ~~----------~~~~~~~~~~~ll~~l~~~i~~lH~---~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~  171 (206)
T PF06293_consen  110 QQ----------WEQLDPSQRRELLRALARLIAKLHD---AGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFR  171 (206)
T ss_pred             Hh----------hcccchhhHHHHHHHHHHHHHHHHH---CcCCCCCCCcccEEEeCCCCceeEEEEcchhceeC
Confidence            43          2226666778899999999999999   6699999999999998887   8999999987653

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>PRK09902 hypothetical protein; Provisional

Probab=98.38  E-value=2.2e-06  Score=86.24  Aligned_cols=133  Identities=14%  Similarity=0.063  Sum_probs=101.9

Q ss_pred             ccCCceEEEEEEECCeeEEEEEcC--------CCCCHHHHHHHHHHHHhcCCCC--ccceecccc---c----ceeEEEe
Q 005680          346 CAGDWTNVYRGRLNHASVAIKTLN--------NGLSEEDFQAKVSFLTAVRHPH--LVAVMGCCS---E----LKCIVFE  408 (683)
Q Consensus       346 G~G~fG~Vykg~~~g~~VAvK~l~--------~~~~~~~~~~Ev~iL~~l~Hpn--IV~l~g~~~---~----~~~LV~E  408 (683)
                      |+||.+.|++..+.|..+=+|.-.        -+.....|.+|...|.+|..-+  +.+.+ ++.   .    ..+||+|
T Consensus        27 ~rgG~SgV~r~~~~g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pv-f~~~~k~~~~~rA~LVTe  105 (216)
T PRK09902         27 RRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIV-FGEAVKIEGEWRALLVTE  105 (216)
T ss_pred             CCCCcceEEEEEeCCcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccc-eeeeeccCCceEEEEEEE
Confidence            467788899999888889999864        1335678999999999995322  33433 332   1    4689999


Q ss_pred             ecCC-CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc--EEEecC
Q 005680          409 YMPN-GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV--AKISGL  485 (683)
Q Consensus       409 y~~g-gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~--~KL~DF  485 (683)
                      -++| -||.+++...        ...+.+...+..++.+|+..+.-||.   .++.|+|+.+.|||++.++.  ++++||
T Consensus       106 ~L~g~~~L~~~l~~~--------~~~~~~~~~k~~il~~va~~ia~LH~---~Gv~Hgdly~khIll~~~g~~~v~lIDl  174 (216)
T PRK09902        106 DMAGFISIADWYAQH--------AVSPYSDEVRQAMLKAVALAFKKMHS---VNRQHGCCYVRHIYVKTEGKAEAGFLDL  174 (216)
T ss_pred             eCCCCccHHHHHhcC--------CcCCcchHHHHHHHHHHHHHHHHHHH---CCCcCCCCCHhheeecCCCCeeEEEEEh
Confidence            7764 5888888432        23356777788999999999999999   67999999999999986666  999999


Q ss_pred             CCccc
Q 005680          486 GLNIC  490 (683)
Q Consensus       486 Gla~~  490 (683)
                      .-++.
T Consensus       175 Ek~r~  179 (216)
T PRK09902        175 EKSRR  179 (216)
T ss_pred             hccch
Confidence            87654

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=98.32  E-value=3e-06  Score=84.36  Aligned_cols=165  Identities=19%  Similarity=0.169  Sum_probs=109.1

Q ss_pred             HHHHHHHHhcCC-CCccceecccccceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhcc
Q 005680          378 QAKVSFLTAVRH-PHLVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS  456 (683)
Q Consensus       378 ~~Ev~iL~~l~H-pnIV~l~g~~~~~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~  456 (683)
                      ..|.-+|..+.+ +++.+++|+|.+  ++|.||++.+++...-...       .....-+|..+.+|+.+++..+.+|+.
T Consensus         7 ~~E~lll~~l~~~~~~pk~lG~CG~--~~v~E~~~~~~~~~~~~~l-------~~~~~~~w~~R~~iA~~lL~~l~~l~~   77 (188)
T PF12260_consen    7 NNEPLLLQLLQGSEPFPKLLGSCGR--FYVVEYVGAGSLYGIYRPL-------SQFLQSPWEQRAKIALQLLELLEELDH   77 (188)
T ss_pred             ccHHHHHHHcCCCCCCCCeeeECCC--EEEEEeecCcccccccccc-------ccccccCHHHHHHHHHHHHHHHHHHhc
Confidence            357888888876 699999999954  7799999877665321000       122357999999999999999999998


Q ss_pred             CCCCcEEeccCCCCcccccCCCcEEEecCCCccc----------cCCCcccccccHHHHHHH-----HhhCCCCchhhHH
Q 005680          457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----------DQLNVRSDIRAFGTLLLH-----LLTGRNWAGLVEK  521 (683)
Q Consensus       457 ~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----------~~~t~ksDVwSlGviL~e-----LltG~~Pf~~~~~  521 (683)
                      .....+.-.|++|+|+-++++|++|++|......          .....-.|..-+.|.-.-     ..++..-      
T Consensus        78 ~~~~~~~lcDv~~~nfgv~~~~~lk~iDld~v~~~~~~~~~l~~~~c~~~~DC~~~dC~s~c~~~~~~C~~~~~------  151 (188)
T PF12260_consen   78 GPLGFFYLCDVSPDNFGVNDDGRLKLIDLDDVFVEDKLDEILSERSCESDEDCTFFDCRSFCDLSEGRCSGQNE------  151 (188)
T ss_pred             CCCCcEEEeecchHHeEEeCCCcEEEEechhcchhHHhhhhccccCCCCCCCcCcCCccCccCCCcCcCCCccc------
Confidence            7655688899999999999999999999987533          122233443224443211     1111110      


Q ss_pred             HhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhh
Q 005680          522 AMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLS  558 (683)
Q Consensus       522 ~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~  558 (683)
                       ...-......+++......|..+.+++..++..|.+
T Consensus       152 -~~Nl~~vC~~l~~~lL~~~p~~l~~~L~~lL~~C~~  187 (188)
T PF12260_consen  152 -NNNLQAVCQKLLDYLLHGPPSELQEELQKLLQECAN  187 (188)
T ss_pred             -cCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Confidence             001112223334443444477788888889888874

Proteins in this uncharacterised family are described as transmembrane proteins.

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=98.26  E-value=6.6e-06  Score=84.26  Aligned_cols=144  Identities=10%  Similarity=0.098  Sum_probs=83.5

Q ss_pred             cccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCc--cceeccccc--ceeEEEeecCCCC-chh
Q 005680          343 RLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHL--VAVMGCCSE--LKCIVFEYMPNGN-LRD  417 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnI--V~l~g~~~~--~~~LV~Ey~~ggs-L~~  417 (683)
                      ..+|+|..+.||+.  .|..+++|..+.........+|.+++..+..-.+  .+.++++.+  ...+|||+++|.+ +..
T Consensus         7 ~~i~~G~t~~~y~~--~~~~~VlR~~~~~~~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~~~glv~e~i~G~~~~~~   84 (226)
T TIGR02172         7 TQTGEGGNGESYTH--KTGKWMLKLYNPGFDKETIKREFDASRKVFSLGIPTPHPFDLVEDGGRLGLIYELIVGKRSFSR   84 (226)
T ss_pred             eeecCCCCcceeEe--cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCCCceEEEEecCCeeeeeeeecCCccchhh
Confidence            35678999999984  3557889998766666778999999999864333  556666533  5678999999863 221


Q ss_pred             hhhhcc----------cc---cccccccccCCHHHHHH-HHHHH----------Hh-hhhhh--ccCCCCcEEeccCCCC
Q 005680          418 KLFTSQ----------RN---YKNCSRARALRWLDRIH-IAHEV----------CL-GLSFL--HSTEPRPIVHGSLTPS  470 (683)
Q Consensus       418 ~L~~~~----------~~---~~~~~~~~~L~~~~~~~-I~~qI----------a~-aL~yL--H~~~~~~IiHrDLKP~  470 (683)
                      .+....          ..   ..+.......+...... +..++          .. ...+|  +... ..++|+|+.|.
T Consensus        85 ~~~~~~~~~~~l~~~la~~l~~lH~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~-~~~~HgD~~~~  163 (226)
T TIGR02172        85 IISDNPSRLEEIAKIFAEMAKKLHSTKCDTSTFQSYKEKIRKFIEEKDFVPKDYKEKARAFIKEVPDT-STCLHGDFQIG  163 (226)
T ss_pred             hhcCCHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCCC-CceEecCCCCC
Confidence            111000          00   00000000111111000 00000          00 01111  2222 45799999999


Q ss_pred             cccccCCCcEEEecCCCccc
Q 005680          471 SILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       471 NILld~~~~~KL~DFGla~~  490 (683)
                      ||+++.++ +.|+||+.+..
T Consensus       164 Nii~~~~~-~~iIDwe~a~~  182 (226)
T TIGR02172       164 NLITSGKG-TYWIDLGDFGY  182 (226)
T ss_pred             cEEEcCCC-cEEEechhcCc
Confidence            99999888 99999998754

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=98.21  E-value=7.1e-06  Score=93.08  Aligned_cols=134  Identities=22%  Similarity=0.218  Sum_probs=92.3

Q ss_pred             cccccCCceEEEEEEE-CCeeEEEEEcCCCCCH---------------------------------------HHHHHHHH
Q 005680          343 RLKCAGDWTNVYRGRL-NHASVAIKTLNNGLSE---------------------------------------EDFQAKVS  382 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~-~g~~VAvK~l~~~~~~---------------------------------------~~~~~Ev~  382 (683)
                      +-+|.-+.|.||++++ +|..||||+-+++...                                       -+|.+|.+
T Consensus       167 ~piaaASlaQVhrA~L~~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~EA~  246 (538)
T KOG1235|consen  167 EPIAAASLAQVHRARLKNGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTKEAK  246 (538)
T ss_pred             chhhhcchhheEEEEecCCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHHHHH
Confidence            3557778999999999 7899999998733210                                       02555655


Q ss_pred             HHHhc----CCCC------ccceecccccceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhh
Q 005680          383 FLTAV----RHPH------LVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLS  452 (683)
Q Consensus       383 iL~~l----~Hpn------IV~l~g~~~~~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~  452 (683)
                      ...++    .|-+      |.++|-.+.....|+||||+|..+.|.-.-         ....++...+..-+.++..-+-
T Consensus       247 Nae~~~~~f~~~~~~~~V~VP~Vy~~~st~RVLtME~~~G~~i~Dl~~i---------~~~gi~~~~i~~~l~~~~~~qI  317 (538)
T KOG1235|consen  247 NAERFRENFKDFSLLTYVLVPKVYWDLSTKRVLTMEYVDGIKINDLDAI---------DKRGISPHDILNKLVEAYLEQI  317 (538)
T ss_pred             hHHHHHHHHHhcccccceeCCeehhhcCcceEEEEEecCCccCCCHHHH---------HHcCCCHHHHHHHHHHHHHHHH
Confidence            54444    4555      445555556688999999999999887542         3344555544444444433333


Q ss_pred             hhccCCCCcEEeccCCCCcccccC----CCcEEEecCCCccc
Q 005680          453 FLHSTEPRPIVHGSLTPSSILLDR----NLVAKISGLGLNIC  490 (683)
Q Consensus       453 yLH~~~~~~IiHrDLKP~NILld~----~~~~KL~DFGla~~  490 (683)
                      +-|     |++|+|-.|.||+++.    ++.+.+-|||+...
T Consensus       318 f~~-----GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~  354 (538)
T KOG1235|consen  318 FKT-----GFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAV  354 (538)
T ss_pred             Hhc-----CCccCCCCCCcEEEecCCCCCccEEEEccccccc
Confidence            333     4999999999999983    67899999999754

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.17  E-value=6.9e-06  Score=84.93  Aligned_cols=126  Identities=18%  Similarity=0.130  Sum_probs=85.7

Q ss_pred             cccccCCceEEEEEEE-CCeeEEEEEcCCCC------------------------CHHHHHHHHHHHHhcCCC--Cccce
Q 005680          343 RLKCAGDWTNVYRGRL-NHASVAIKTLNNGL------------------------SEEDFQAKVSFLTAVRHP--HLVAV  395 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~-~g~~VAvK~l~~~~------------------------~~~~~~~Ev~iL~~l~Hp--nIV~l  395 (683)
                      ..+|-|-=+.||.|.. .|.++|||.-+...                        +.....+|..+|.+|...  .|.+.
T Consensus        97 ~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~VP~P  176 (304)
T COG0478          97 TKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVKVPKP  176 (304)
T ss_pred             cccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCCCCCCc
Confidence            4668888999999999 69999999754110                        113467899999988644  55555


Q ss_pred             ecccccceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccccc
Q 005680          396 MGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD  475 (683)
Q Consensus       396 ~g~~~~~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld  475 (683)
                      +++  +.-.+||||++|-.|...=               ++....-.|+..|+.-+.-+-.   .||||+|+++-|||++
T Consensus       177 ~~~--nRHaVvMe~ieG~eL~~~r---------------~~~en~~~il~~il~~~~~~~~---~GiVHGDlSefNIlV~  236 (304)
T COG0478         177 IAW--NRHAVVMEYIEGVELYRLR---------------LDVENPDEILDKILEEVRKAYR---RGIVHGDLSEFNILVT  236 (304)
T ss_pred             ccc--ccceeeeehcccceeeccc---------------CcccCHHHHHHHHHHHHHHHHH---cCccccCCchheEEEe
Confidence            543  2457999999986554322               1122222333333333333334   5799999999999999


Q ss_pred             CCCcEEEecCCCc
Q 005680          476 RNLVAKISGLGLN  488 (683)
Q Consensus       476 ~~~~~KL~DFGla  488 (683)
                      .+|.+.++||--+
T Consensus       237 ~dg~~~vIDwPQ~  249 (304)
T COG0478         237 EDGDIVVIDWPQA  249 (304)
T ss_pred             cCCCEEEEeCccc
Confidence            9999999999654

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=98.11  E-value=1.2e-05  Score=80.72  Aligned_cols=144  Identities=18%  Similarity=0.178  Sum_probs=83.1

Q ss_pred             ccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCC--Cccceeccccc-----ceeEEEeecCCCCch
Q 005680          344 LKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHP--HLVAVMGCCSE-----LKCIVFEYMPNGNLR  416 (683)
Q Consensus       344 liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~Hp--nIV~l~g~~~~-----~~~LV~Ey~~ggsL~  416 (683)
                      .+++|..+.||+...++..+++|..........+..|+.++..+...  .+.+++.++..     ..+++|++++|.++.
T Consensus         4 ~l~~G~~n~~~~v~~~~~~~vlK~~~~~~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~~~~~~~~i~g~~~~   83 (239)
T PF01636_consen    4 PLSGGFSNRVYRVTTDDGRYVLKFYRPPDAAERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGFPYLLMEYIPGRPLD   83 (239)
T ss_dssp             EEEESSSSEEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSEEEEEEEEESSEEHH
T ss_pred             cCCCCCeeeEEEEEECCcEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCceEEeecccccccccceEEEEEecccccc
Confidence            45678888999999977899999986544456788999999888533  34566654322     468999999998888


Q ss_pred             h----------------hhhhcccccccccccccCCHHH---------HHHH------------HHHHHh-hhhhhcc--
Q 005680          417 D----------------KLFTSQRNYKNCSRARALRWLD---------RIHI------------AHEVCL-GLSFLHS--  456 (683)
Q Consensus       417 ~----------------~L~~~~~~~~~~~~~~~L~~~~---------~~~I------------~~qIa~-aL~yLH~--  456 (683)
                      .                .+..-....   ....++.+..         ....            ...+.. .+..++.  
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~~lh~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (239)
T PF01636_consen   84 DELSPEQRPELLRQLGRALAQLHQVP---PPFSPFADWPEWRLEFLRQLESWTARLRASELFDDLEELEERLLQELEALL  160 (239)
T ss_dssp             HTSTHHHHHHHHHHHHHHHHHHHHSH---TTCCCHTHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccchhhhhhccccc---ccccccccccccccccccccccccccccchhhhhhhHHHHHHHHHHHHhhh
Confidence            7                111110000   0000111100         0000            111122 2233332  


Q ss_pred             --CCCCcEEeccCCCCccccc-CCCcEEEecCCCccc
Q 005680          457 --TEPRPIVHGSLTPSSILLD-RNLVAKISGLGLNIC  490 (683)
Q Consensus       457 --~~~~~IiHrDLKP~NILld-~~~~~KL~DFGla~~  490 (683)
                        ..+..++|+|+.|.|||++ .++.+-|+||+.+..
T Consensus       161 ~~~~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~~  197 (239)
T PF01636_consen  161 PKPLPPVLIHGDLHPGNILVDPSDGRIGIIDFEDAGW  197 (239)
T ss_dssp             HCCSCEEEE-SS-SGGGEEEESSTTEEEE--GTT-EE
T ss_pred             ccCCCcEEEEeccccccceeeeccceeEEEecccceE
Confidence              2336799999999999999 666668999998754

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=98.06  E-value=2.1e-05  Score=80.80  Aligned_cols=155  Identities=14%  Similarity=0.095  Sum_probs=88.9

Q ss_pred             CceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhcC-CCCccceeccccc--ceeEEEeecCCCCchhhhhhccc-
Q 005680          349 DWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVR-HPHLVAVMGCCSE--LKCIVFEYMPNGNLRDKLFTSQR-  424 (683)
Q Consensus       349 ~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~-HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~~L~~~~~-  424 (683)
                      +-..||+....+..+.||+..... ...+.+|+.++..+. +--+.++++++..  ..++||++++|.+|......... 
T Consensus        11 ~~~~v~~~~~~~~~~~vk~~~~~~-~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~~~~~~~~~~   89 (244)
T cd05150          11 SGATVYRLDGKNPGLYLKIAPSGP-TYELEREAERLRWLAGKLPVPEVIDYGSDDGRAWLLTSAVPGVPAAALWEELEPE   89 (244)
T ss_pred             CcCeEEEEcCCCCcEEEEecCCCc-ccchHHHHHHHHHHHhcCCCCeEEEEEecCCccEEEEEeeCCccHhHhhcccCHH
Confidence            447899998877889999886432 446788999998884 3334566776654  57899999999887754210000 


Q ss_pred             -------c---ccccc--ccccCCH--HHHHHH-----------------------HHHHHhhhhhhc-cCCCCcEEecc
Q 005680          425 -------N---YKNCS--RARALRW--LDRIHI-----------------------AHEVCLGLSFLH-STEPRPIVHGS  466 (683)
Q Consensus       425 -------~---~~~~~--~~~~L~~--~~~~~I-----------------------~~qIa~aL~yLH-~~~~~~IiHrD  466 (683)
                             .   .....  ...++..  ......                       ...+...|.... ...+..++|+|
T Consensus        90 ~~~~~l~~~l~~lH~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgD  169 (244)
T cd05150          90 RLVDALAEALRRLHALPVADCPFDRRLDRRLAEARARVENGLVDEDDFDDERRGWSAEELYAELEATRPAEEDLVVTHGD  169 (244)
T ss_pred             HHHHHHHHHHHHHhcCCcccCCcchhHHHHHHHHHHHHhcCCcChhhCcHhhcCCCHHHHHHHHHhhCCCcCceEEECCC
Confidence                   0   00000  0001110  000000                       111111111111 11225699999


Q ss_pred             CCCCcccccCCCcEEEecCCCccccCCCcccccccHHHHHHHH
Q 005680          467 LTPSSILLDRNLVAKISGLGLNICDQLNVRSDIRAFGTLLLHL  509 (683)
Q Consensus       467 LKP~NILld~~~~~KL~DFGla~~~~~t~ksDVwSlGviL~eL  509 (683)
                      +.|.|||++.++.+.|+||+.+..+  ++.   |-|+.++..+
T Consensus       170 ~~~~Nil~~~~~~~~iIDwe~a~~g--dp~---~Dla~~~~~~  207 (244)
T cd05150         170 ACLPNIIVDPGKFSGFIDLGRLGVA--DRY---QDLALAVRSL  207 (244)
T ss_pred             CCCccEEEeCCcEEEEEEccccccc--cHH---HHHHHHHHHh
Confidence            9999999999888899999987543  222   3355555444

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.05  E-value=1.1e-06  Score=99.95  Aligned_cols=123  Identities=23%  Similarity=0.344  Sum_probs=88.4

Q ss_pred             HHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---------------------------------
Q 005680          444 AHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---------------------------------  490 (683)
Q Consensus       444 ~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---------------------------------  490 (683)
                      +.+++.||.|+|.+.  ++||++|.|++|.++.++..||+.|+++..                                 
T Consensus       105 l~~v~dgl~flh~sA--k~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~  182 (700)
T KOG2137|consen  105 LGNVADGLAFLHRSA--KVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLL  182 (700)
T ss_pred             hhcccchhhhhccCc--ceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhc
Confidence            445669999999964  699999999999999999999999998632                                 


Q ss_pred             -cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHH-HhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccc
Q 005680          491 -DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQ-VLDGNAGIWPLDLAEELAGIALKCLSADQDANRDL  567 (683)
Q Consensus       491 -~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~-ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RP  567 (683)
                       ...++++|+|||||++|.+.. |++-+.....   ........ ..+......+.+++.++.+-+.+++..+  +.-||
T Consensus       183 ~~~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~---~~~~~~~~~~~~~~~~~~s~~~p~el~~~l~k~l~~~--~~~rp  257 (700)
T KOG2137|consen  183 GTTNTPASDVFSLGVLIYTIYNGGKSIIAANGG---LLSYSFSRNLLNAGAFGYSNNLPSELRESLKKLLNGD--SAVRP  257 (700)
T ss_pred             cccccccccceeeeeEEEEEecCCcchhhccCC---cchhhhhhcccccccccccccCcHHHHHHHHHHhcCC--cccCc
Confidence             234689999999999999994 5543322111   00111111 1122233345678899999999999999  77899


Q ss_pred             cHHHHH
Q 005680          568 RIAGVM  573 (683)
Q Consensus       568 s~~eVl  573 (683)
                      ++..+.
T Consensus       258 ~~~~l~  263 (700)
T KOG2137|consen  258 TLDLLL  263 (700)
T ss_pred             chhhhh
Confidence            766654

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=97.95  E-value=6e-05  Score=76.38  Aligned_cols=126  Identities=13%  Similarity=0.133  Sum_probs=83.3

Q ss_pred             cccccCCceEEEEEEECCeeEEEEEcCCCCC-H----------HHHHHHHHHHHhcCC---CCccceeccc-------cc
Q 005680          343 RLKCAGDWTNVYRGRLNHASVAIKTLNNGLS-E----------EDFQAKVSFLTAVRH---PHLVAVMGCC-------SE  401 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~-~----------~~~~~Ev~iL~~l~H---pnIV~l~g~~-------~~  401 (683)
                      ++.-......|.+-..+|..+++|..+.... .          ....+.+..+.+++.   -.++.++.+.       ..
T Consensus        37 kv~k~~~r~~ValIei~~~kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~g~~~~~~~yl~~ekk~~~~~~  116 (229)
T PF06176_consen   37 KVFKNTKRNYVALIEIDGKKYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNEGFTEPADPYLAAEKKIFRYTS  116 (229)
T ss_pred             EeecCCCccEEEEEEECCcEEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHcCccccccceeeeeeeecccee
Confidence            3444445667888888999999999873221 1          112344444444432   2223323222       12


Q ss_pred             ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEE
Q 005680          402 LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAK  481 (683)
Q Consensus       402 ~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~K  481 (683)
                      ..+|||||++|..|.++..              ++.    .+...|+.++.-||.   .|++|+|..|+|++++.++ ++
T Consensus       117 ~~~ll~EYIeG~~l~d~~~--------------i~e----~~~~ki~~~ikqlH~---~G~~HGD~hpgNFlv~~~~-i~  174 (229)
T PF06176_consen  117 SYVLLMEYIEGVELNDIED--------------IDE----DLAEKIVEAIKQLHK---HGFYHGDPHPGNFLVSNNG-IR  174 (229)
T ss_pred             EEEEEEEEecCeecccchh--------------cCH----HHHHHHHHHHHHHHH---cCCccCCCCcCcEEEECCc-EE
Confidence            4568999999988877651              222    245667788999999   6699999999999998655 99


Q ss_pred             EecCCCccc
Q 005680          482 ISGLGLNIC  490 (683)
Q Consensus       482 L~DFGla~~  490 (683)
                      ++||+..+.
T Consensus       175 iID~~~k~~  183 (229)
T PF06176_consen  175 IIDTQGKRM  183 (229)
T ss_pred             EEECccccc
Confidence            999987654

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=97.89  E-value=7.3e-05  Score=76.61  Aligned_cols=69  Identities=7%  Similarity=0.116  Sum_probs=45.0

Q ss_pred             cCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCC---Cccceeccccc-----ceeEEEeecCCCCchhh
Q 005680          347 AGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHP---HLVAVMGCCSE-----LKCIVFEYMPNGNLRDK  418 (683)
Q Consensus       347 ~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~Hp---nIV~l~g~~~~-----~~~LV~Ey~~ggsL~~~  418 (683)
                      +|....||+.   +..+++|..+.......+.+|+.+|..+...   -+..+++.+..     ..++||++++|.++.+.
T Consensus         8 gG~~n~vy~~---~~~~VlR~~~~~~~~~~~~~E~~~l~~L~~~~~v~vP~~~~~~~~~~~~~~~~~l~~~i~G~~l~~~   84 (235)
T cd05155           8 GGTDNATFRL---GDDMSVRLPSAAGYAGQVRKEQRWLPRLAPHLPLPVPEPLGKGEPGEGYPWPWSVYRWLEGETATAA   84 (235)
T ss_pred             CCcccceEEc---CCceEEEcCCccchHHHHHHHHHHHHHHhccCCCCCCceeecCCCccCCCcceEEEEeecCCCCCcc
Confidence            3444469975   3457788766544556899999999887532   23344444322     34889999999887543

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=97.88  E-value=8.1e-05  Score=76.39  Aligned_cols=131  Identities=17%  Similarity=0.174  Sum_probs=86.1

Q ss_pred             ccccCCceEEEEEEE-CCeeEEEEEcCCCCC---------------------HH-----HHHHHHHHHHhcC--CCCccc
Q 005680          344 LKCAGDWTNVYRGRL-NHASVAIKTLNNGLS---------------------EE-----DFQAKVSFLTAVR--HPHLVA  394 (683)
Q Consensus       344 liG~G~fG~Vykg~~-~g~~VAvK~l~~~~~---------------------~~-----~~~~Ev~iL~~l~--HpnIV~  394 (683)
                      .++.|--+.||+|.. ++..||||+.+....                     ..     -...|+..|.++.  +-.+.+
T Consensus        55 ~istGKEA~Vy~a~~~~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~W~~kEf~NL~R~~eAGVrvP~  134 (268)
T COG1718          55 CISTGKEANVYLAETGDGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFAWARKEFRNLKRAYEAGVRVPE  134 (268)
T ss_pred             eecCCcceEEEeeccCCCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            445677789999987 689999999862111                     00     1345666676663  223333


Q ss_pred             eecccccceeEEEeecCCCCc-hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccc
Q 005680          395 VMGCCSELKCIVFEYMPNGNL-RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSIL  473 (683)
Q Consensus       395 l~g~~~~~~~LV~Ey~~ggsL-~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NIL  473 (683)
                      -+++.  ...|||||+....+ .-.           -...++...+...+..+++..+.-|-..  -++||+||+.=|||
T Consensus       135 Pi~~~--~nVLvMEfIg~~g~pAP~-----------LkDv~~e~~e~~~~~~~~v~~~~~l~~~--a~LVHgDLSEyNiL  199 (268)
T COG1718         135 PIAFR--NNVLVMEFIGDDGLPAPR-----------LKDVPLELEEAEGLYEDVVEYMRRLYKE--AGLVHGDLSEYNIL  199 (268)
T ss_pred             ceeec--CCeEEEEeccCCCCCCCC-----------cccCCcCchhHHHHHHHHHHHHHHHHHh--cCcccccchhhheE
Confidence            34433  34799999964311 111           1223334446677778888887777652  24999999999999


Q ss_pred             ccCCCcEEEecCCCccc
Q 005680          474 LDRNLVAKISGLGLNIC  490 (683)
Q Consensus       474 ld~~~~~KL~DFGla~~  490 (683)
                      +. ++.+.|+|||-|..
T Consensus       200 ~~-~~~p~iID~~QaV~  215 (268)
T COG1718         200 VH-DGEPYIIDVSQAVT  215 (268)
T ss_pred             EE-CCeEEEEECccccc
Confidence            98 88999999997743

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=97.87  E-value=4.3e-05  Score=74.56  Aligned_cols=126  Identities=17%  Similarity=0.144  Sum_probs=89.9

Q ss_pred             cccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCcc-ceecccccceeEEEeecCCCCchhhhhh
Q 005680          343 RLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLV-AVMGCCSELKCIVFEYMPNGNLRDKLFT  421 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV-~l~g~~~~~~~LV~Ey~~ggsL~~~L~~  421 (683)
                      +.+++|++|.||+|.+.|..+|+|+-+.+.....+..|+++|..+.--++. ++|.+-.+  ++.|||+.|-+|.+.-..
T Consensus        28 ~~L~KG~~s~Vyl~~~~~~~~a~Kvrr~ds~r~~l~kEakiLeil~g~~~~p~vy~yg~~--~i~me~i~G~~L~~~~~~  105 (201)
T COG2112          28 KELAKGTTSVVYLGEWRGGEVALKVRRRDSPRRNLEKEAKILEILAGEGVTPEVYFYGED--FIRMEYIDGRPLGKLEIG  105 (201)
T ss_pred             hhhhcccccEEEEeeccCceEEEEEecCCcchhhHHHHHHHHHHhhhcCCCceEEEechh--hhhhhhhcCcchhhhhhc
Confidence            567899999999999999999999998888888999999999998766654 33333333  455999998888776621


Q ss_pred             cccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCC-CCcccccCCCcEEEecCCCccc
Q 005680          422 SQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLT-PSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       422 ~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLK-P~NILld~~~~~KL~DFGla~~  490 (683)
                      .             +-..    +..++.+---|-.   .||-|+.|. |..++|-.++.+.|+||..|+.
T Consensus       106 ~-------------~rk~----l~~vlE~a~~LD~---~GI~H~El~~~~k~vlv~~~~~~iIDFd~At~  155 (201)
T COG2112         106 G-------------DRKH----LLRVLEKAYKLDR---LGIEHGELSRPWKNVLVNDRDVYIIDFDSATF  155 (201)
T ss_pred             c-------------cHHH----HHHHHHHHHHHHH---hccchhhhcCCceeEEecCCcEEEEEccchhh
Confidence            1             2222    2333333222233   568888874 6556666666999999998864

>PLN02876 acyl-CoA dehydrogenase

Probab=97.86  E-value=0.00013  Score=88.50  Aligned_cols=74  Identities=14%  Similarity=0.216  Sum_probs=55.1

Q ss_pred             cccccCCceEEEEEEECC----eeEEEEEcCCC---CCHHHHHHHHHHHHhcC-CCCc--cceeccccc-----ceeEEE
Q 005680          343 RLKCAGDWTNVYRGRLNH----ASVAIKTLNNG---LSEEDFQAKVSFLTAVR-HPHL--VAVMGCCSE-----LKCIVF  407 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g----~~VAvK~l~~~---~~~~~~~~Ev~iL~~l~-HpnI--V~l~g~~~~-----~~~LV~  407 (683)
                      ..++.|.++.+|+....+    ..+++|+....   .....+.+|+.+|+.+. |++|  .+++++|.+     ..|+||
T Consensus        44 ~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~~~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v~G~~flVM  123 (822)
T PLN02876         44 SQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLLQSAHAVEREYQVLRALGEHTDVPVPKVYCLCTDASVIGTAFYIM  123 (822)
T ss_pred             EEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccCccHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCcCCCceEEE
Confidence            445678889999988743    46888886532   23457889999999995 6665  778888765     578999


Q ss_pred             eecCCCCch
Q 005680          408 EYMPNGNLR  416 (683)
Q Consensus       408 Ey~~ggsL~  416 (683)
                      ||++|..+.
T Consensus       124 E~v~G~~~~  132 (822)
T PLN02876        124 EYLEGRIFV  132 (822)
T ss_pred             EecCCcccC
Confidence            999986543

>PRK10593 hypothetical protein; Provisional

Probab=97.82  E-value=0.00023  Score=75.89  Aligned_cols=73  Identities=7%  Similarity=0.009  Sum_probs=55.6

Q ss_pred             cccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhcCC---CCccceeccccc-----ceeEEEeecCCCC
Q 005680          343 RLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRH---PHLVAVMGCCSE-----LKCIVFEYMPNGN  414 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~H---pnIV~l~g~~~~-----~~~LV~Ey~~ggs  414 (683)
                      .-+|+|..+.||.....+..+.+|..+.......+..|...|+.|.-   -.+.+++++|..     ..+||||+++|++
T Consensus        20 ~~i~~G~~~~vy~~~~~~~~~~~k~~~~~~~~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~~~~~g~~~LVmE~i~G~~   99 (297)
T PRK10593         20 ECISEQPYAALWALYDSQGNPMPLMARSFSTPGVAQQEAWKLSMLARSGTVRMPTVYGVMTHEQSPGPDVLLLERLRGVS   99 (297)
T ss_pred             eecCCccceeEEEEEcCCCCEEEEEecccccchHHHHHHHHHHHHccCCCCCcCcEEEEeccCCcCCCeEEEEeccCCEe
Confidence            34578999999998875556778885442345689999999998853   357788887642     5799999999887


Q ss_pred             c
Q 005680          415 L  415 (683)
Q Consensus       415 L  415 (683)
                      +
T Consensus       100 ~  100 (297)
T PRK10593        100 V  100 (297)
T ss_pred             c
Confidence            6

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=97.80  E-value=0.00018  Score=73.35  Aligned_cols=160  Identities=10%  Similarity=0.105  Sum_probs=90.8

Q ss_pred             ccccCCceEEEEEEEC---CeeEEEEEcCCCCC-HHHHHHHHHHHHhcCCCC-ccceecccccceeEEEeecCCCCchhh
Q 005680          344 LKCAGDWTNVYRGRLN---HASVAIKTLNNGLS-EEDFQAKVSFLTAVRHPH-LVAVMGCCSELKCIVFEYMPNGNLRDK  418 (683)
Q Consensus       344 liG~G~fG~Vykg~~~---g~~VAvK~l~~~~~-~~~~~~Ev~iL~~l~Hpn-IV~l~g~~~~~~~LV~Ey~~ggsL~~~  418 (683)
                      .+.+|-...||+....   +..|++|+...... .-...+|+.++..+...+ ..++++.+.  ..+||||++|.++...
T Consensus         5 ~l~gG~tN~~~~v~~~~~~~~~~vlR~~~~~~~~~~d~~~E~~~~~~l~~~gl~P~v~~~~~--~~~l~e~i~G~~l~~~   82 (235)
T cd05157           5 RFTGGITNKLVKVSNKEDNQDAVLVRVYGNKTELIIDRERELRIHKLLSKHGLAPKLYATFQ--NGLIYEFIPGRTLEPE   82 (235)
T ss_pred             EcCCcccceEEEEEcCCCCCCeEEEEEccCCccceecHHHHHHHHHHHHhCCCCCeEEEEeC--CcEEEEeeCCCcCCHH
Confidence            3456777899999875   57899998753221 123357899999885433 345555443  3589999998776422


Q ss_pred             --------------hhhccccccccc-----ccccCCHHHHHHHHH-------------------------HHHhhh-hh
Q 005680          419 --------------LFTSQRNYKNCS-----RARALRWLDRIHIAH-------------------------EVCLGL-SF  453 (683)
Q Consensus       419 --------------L~~~~~~~~~~~-----~~~~L~~~~~~~I~~-------------------------qIa~aL-~y  453 (683)
                                    |..-+.......     ....-.+..+..+..                         +.+..| ..
T Consensus        83 ~~~~~~~~~~la~~l~~lH~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  162 (235)
T cd05157          83 DLRNPKIYRLIARELAKLHSIKPPEAISSPGTPKPILWPTIRKWINLVPTEFKKPEKFQKKTKAISFEQLRDEISWLKEL  162 (235)
T ss_pred             HccChHHHHHHHHHHHHHhcccccccccccCCCCCcHHHHHHHHHHHhHHhhccccchhhhhccccHHHHHHHHHHHHHH
Confidence                          100000000000     001111222212211                         111111 11


Q ss_pred             hccC-CCCcEEeccCCCCcccccC-CCcEEEecCCCccccCCCcccccccHHHHHHHHh
Q 005680          454 LHST-EPRPIVHGSLTPSSILLDR-NLVAKISGLGLNICDQLNVRSDIRAFGTLLLHLL  510 (683)
Q Consensus       454 LH~~-~~~~IiHrDLKP~NILld~-~~~~KL~DFGla~~~~~t~ksDVwSlGviL~eLl  510 (683)
                      +-.. .+..++|+|+.|.|||++. ++.+.|+||..|..+..     .|-+|+++.|+.
T Consensus       163 l~~~~~~~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~~~~~-----~~Dla~~~~e~~  216 (235)
T cd05157         163 LSALNSPIVFCHNDLLSGNIIYNEEKNSVKFIDYEYAGYNYR-----AFDIANHFNEWA  216 (235)
T ss_pred             hcccCCCEEEEcCCCCcCcEEEeCCCCCEEEEEcccCCcCch-----heeHHHHHHHHc
Confidence            1111 2357999999999999998 57899999998855322     466788888865

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>PRK05231 homoserine kinase; Provisional

Probab=97.69  E-value=0.00081  Score=72.01  Aligned_cols=162  Identities=13%  Similarity=0.166  Sum_probs=88.0

Q ss_pred             ccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCC--ccceecc--------cccceeEEEeecCCC
Q 005680          344 LKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPH--LVAVMGC--------CSELKCIVFEYMPNG  413 (683)
Q Consensus       344 liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~Hpn--IV~l~g~--------~~~~~~LV~Ey~~gg  413 (683)
                      .+++|....+|+...++..+++|+.. ......+..|+.++..|...+  +.+.+..        ..+..+++++|++|.
T Consensus        29 ~l~~G~~n~~y~v~t~~g~~vLK~~~-~~~~~~l~~~~~~l~~L~~~glpvP~~i~~~~G~~~~~~~g~~~~l~~~l~G~  107 (319)
T PRK05231         29 GIAEGIENSNFFLTTTQGEYVLTLFE-RLTAEDLPFFLGLMQHLAARGVPVPAPVARRDGAALGELAGKPAAIVTFLEGK  107 (319)
T ss_pred             hhccccccceEEEEeCCCcEEEEEec-cCChHHhHHHHHHHHHHHHCCCCCCcceeCCCCCEeeeeCCEEEEEEEecCCC
Confidence            34456667899988766689999886 334455666777776663222  2333321        123578999999987


Q ss_pred             Cchh-----------hhhhccc---ccccc-cccccCCH-HHHHH------------HHHH-HHhhhhhhcc----CCCC
Q 005680          414 NLRD-----------KLFTSQR---NYKNC-SRARALRW-LDRIH------------IAHE-VCLGLSFLHS----TEPR  460 (683)
Q Consensus       414 sL~~-----------~L~~~~~---~~~~~-~~~~~L~~-~~~~~------------I~~q-Ia~aL~yLH~----~~~~  460 (683)
                      .+..           .|..-+.   ..... .....+.| .....            .+.+ +...+..+..    .-|.
T Consensus       108 ~~~~~~~~~~~~~G~~LA~lH~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lp~  187 (319)
T PRK05231        108 WPRAPTAAHCAEVGEMLARMHLAGRDFPLERPNLRGLAWWRELAPRLLPFLADEQAALLEAELAAQLAFLASAAWPALPR  187 (319)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhhhhcCCccCCCCCChHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhhhccccccCCc
Confidence            5531           1111100   00000 00111212 11111            1111 1112223321    1346


Q ss_pred             cEEeccCCCCcccccCCCcEEEecCCCccccCCCcccccccHHHHHHHHhh
Q 005680          461 PIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVRSDIRAFGTLLLHLLT  511 (683)
Q Consensus       461 ~IiHrDLKP~NILld~~~~~KL~DFGla~~~~~t~ksDVwSlGviL~eLlt  511 (683)
                      ++||+|+.|.|||++.+...-|+||+.+..+.     =+|=+++++..++.
T Consensus       188 ~liHgD~~~~Nil~~~~~~~~iIDf~~~~~~~-----~~~DlA~~~~~~~~  233 (319)
T PRK05231        188 GVIHADLFRDNVLFEGDRLSGFIDFYFACNDK-----LLYDVAITLNDWCF  233 (319)
T ss_pred             ccCCCCCCCCcEEEECCceEEEEecccccCCc-----hHHHHHHHHHHHHc
Confidence            89999999999999977667899999885532     25566666655444

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=97.68  E-value=0.00082  Score=71.77  Aligned_cols=164  Identities=12%  Similarity=0.171  Sum_probs=92.9

Q ss_pred             ccccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCC--Cccceecccc--------cceeEEEeecC
Q 005680          342 FRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHP--HLVAVMGCCS--------ELKCIVFEYMP  411 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~Hp--nIV~l~g~~~--------~~~~LV~Ey~~  411 (683)
                      .+.+++|....+|+...++..+++|+.+.......+..|+.++..|...  .+.+++....        +..++|++|++
T Consensus        27 i~~~~~G~~n~~y~v~t~~~~~vLK~~~~~~~~~~i~~e~~~l~~L~~~g~pvp~~i~t~~g~~~~~~~g~~~~l~e~i~  106 (307)
T TIGR00938        27 LKGIAEGVENSNYLLTTDVGRYILTLYEKRVKAEELPFFLALTTHLAARGLPVPKPVKSRDGRQLSTLAGKPACLVEFLQ  106 (307)
T ss_pred             ccccCCccccceEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHHHHHHCCCCCCccccCCCCCeehhcCCeEEEEEEeCC
Confidence            3455566557899987766678899876544456677788888877422  2444444322        24689999999


Q ss_pred             CCCchhh--------------hhhccccccccccc--ccCCHHHHHH------------HHHHHHhhhhhhcc----CCC
Q 005680          412 NGNLRDK--------------LFTSQRNYKNCSRA--RALRWLDRIH------------IAHEVCLGLSFLHS----TEP  459 (683)
Q Consensus       412 ggsL~~~--------------L~~~~~~~~~~~~~--~~L~~~~~~~------------I~~qIa~aL~yLH~----~~~  459 (683)
                      |.++...              ++............  ..-.|.....            ....+...+.++..    ..|
T Consensus       107 G~~~~~~~~~~~~~~G~~LA~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~~  186 (307)
T TIGR00938       107 GLSVGRPTAMHCRPVGEVLAWMHLAGAHFPENRKNSLRLEAWHILAEKCFEAAPQLEAHMGAELDKELDYLDKFWPRDLP  186 (307)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCCCChHHHHHHHHhhhhcccccCHHHHHHHHHHHHHHHhhhhhcCC
Confidence            8665321              11100000000000  0011211100            01122334444432    234


Q ss_pred             CcEEeccCCCCcccccCCCcEEEecCCCccccCCCcccccccHHHHHHHHh
Q 005680          460 RPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVRSDIRAFGTLLLHLL  510 (683)
Q Consensus       460 ~~IiHrDLKP~NILld~~~~~KL~DFGla~~~~~t~ksDVwSlGviL~eLl  510 (683)
                      .+++|+|+.+.||+++.++.+.|+||+.+..+     .-+|-|+.++..+.
T Consensus       187 ~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~~~~-----~~~~DLA~~~~~~~  232 (307)
T TIGR00938       187 RGVIHADLFPDNVLFDGDSVKGVIDFYFACTD-----ARAYDLAITVNAWC  232 (307)
T ss_pred             CccCCCCCCcCcEEEECCceEEEeecccccCc-----chHHHHHHHHHHHH
Confidence            78999999999999999887899999987543     22555666554333

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=5.1e-05  Score=89.73  Aligned_cols=75  Identities=24%  Similarity=0.452  Sum_probs=69.5

Q ss_pred             CCCCCccccccccccccCCCcccC-CCcchhhHHHHHHHcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHhhcCC
Q 005680          605 SNDVPSVFICPIFQEVMKTPHVAA-DGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNKQSS  680 (683)
Q Consensus       605 ss~~Ps~f~cPIs~elm~dPvv~~-dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN~~lr~~I~~w~~~~~~  680 (683)
                      -..+|++|..|+...+|.|||+.| .|.+.+|+.|.+++-. ..|+|..+.+|+..+++||-+||..|+.|..++..
T Consensus       864 l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek~~  939 (943)
T KOG2042|consen  864 LGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEKRN  939 (943)
T ss_pred             hccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHhhh
Confidence            456999999999999999999998 9999999999999865 68999999999999999999999999999987654

>TIGR02721 ycfN_thiK thiamine kinase

Probab=97.65  E-value=0.0002  Score=74.26  Aligned_cols=152  Identities=10%  Similarity=0.028  Sum_probs=86.1

Q ss_pred             cCCceEEEEEEECCeeEEEEEcCCCCCH--HHHHHHHHHHHhcCCCCc-cceecccccceeEEEeecCCCCchhh-----
Q 005680          347 AGDWTNVYRGRLNHASVAIKTLNNGLSE--EDFQAKVSFLTAVRHPHL-VAVMGCCSELKCIVFEYMPNGNLRDK-----  418 (683)
Q Consensus       347 ~G~fG~Vykg~~~g~~VAvK~l~~~~~~--~~~~~Ev~iL~~l~HpnI-V~l~g~~~~~~~LV~Ey~~ggsL~~~-----  418 (683)
                      +|-.+.+|+...+|..+++|........  -...+|..++..+....+ .++++.+.  .++||||++|.++...     
T Consensus         6 ~G~tn~~y~~~~~~~~~vlR~~~~~~~~~~~~r~~E~~~l~~l~~~g~~P~~i~~~~--~~~v~e~i~G~~~~~~~~~~~   83 (256)
T TIGR02721         6 GGLTNRSWRIEHPGISFVWRPQSPVCKALGVDRQREYQILQALSALGLAPKPILVNE--HWLLVEWLEGEVITLDQFVAL   83 (256)
T ss_pred             CcCcCCeEEEEeCCccEEEeeCCcccccccCcHHHHHHHHHHHHhcCCCCceEEEeC--CEEEEEeccCcccccccccCc
Confidence            4777889999888888999986532221  245789999998864333 34444433  4789999998776532     


Q ss_pred             ---------hhhcccccccccccccCCHHH-HHHHHHHH------------Hhhhhhh--ccCCCCcEEeccCCCCcccc
Q 005680          419 ---------LFTSQRNYKNCSRARALRWLD-RIHIAHEV------------CLGLSFL--HSTEPRPIVHGSLTPSSILL  474 (683)
Q Consensus       419 ---------L~~~~~~~~~~~~~~~L~~~~-~~~I~~qI------------a~aL~yL--H~~~~~~IiHrDLKP~NILl  474 (683)
                               |..-+...   ....+++... ...+..++            ...+...  ....+..++|+|+.|.|||+
T Consensus        84 ~~~~~la~~l~~lH~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~H~Dl~~~Nil~  160 (256)
T TIGR02721        84 DLLLELAALLHQLHSQP---RFGYPLSLKARIAHYWLQIDPARRTPEWLRLYKQFRSAPEPAPLPLAPLHMDVHAYNLVV  160 (256)
T ss_pred             hhHHHHHHHHHHHhCCC---CCCCCCCHHHHHHHHHHhcccccCChHHHHHHHHHHhccCCCCCCCeeecCCCCcCcEEE
Confidence                     11010000   0111222211 11211111            1111111  01112468999999999999


Q ss_pred             cCCCcEEEecCCCccccCCCcccccccHHHHHHHH
Q 005680          475 DRNLVAKISGLGLNICDQLNVRSDIRAFGTLLLHL  509 (683)
Q Consensus       475 d~~~~~KL~DFGla~~~~~t~ksDVwSlGviL~eL  509 (683)
                      +.++ +.|+||..|..+  ++.   |-||.++.+.
T Consensus       161 ~~~~-~~lIDwE~a~~g--dp~---~DLa~~~~~~  189 (256)
T TIGR02721       161 TPQG-LKLIDWEYASDG--DIA---LELAAIIRAN  189 (256)
T ss_pred             eCCC-CEEEeccccCcC--CHH---HHHHHHHHhC
Confidence            9877 789999988543  333   3345555543

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=97.60  E-value=0.0011  Score=73.29  Aligned_cols=72  Identities=19%  Similarity=0.128  Sum_probs=54.5

Q ss_pred             cccccCCceEEEEEEEC-C-eeEEEEEcCC---------CCCHHHHHHHHHHHHhcC---CCCccceecccccceeEEEe
Q 005680          343 RLKCAGDWTNVYRGRLN-H-ASVAIKTLNN---------GLSEEDFQAKVSFLTAVR---HPHLVAVMGCCSELKCIVFE  408 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~-g-~~VAvK~l~~---------~~~~~~~~~Ev~iL~~l~---HpnIV~l~g~~~~~~~LV~E  408 (683)
                      +-+|+|.+..||++... | +.|+||.-.+         ....+.+..|...|..+.   ..++.+++.+..+..++|||
T Consensus        32 ~elggGn~N~VyrV~~~~g~~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae~L~~l~~~~p~~VPkV~~~D~~~~~lVME  111 (401)
T PRK09550         32 REIGDGNLNLVFRVSDTEGGKSVIVKQALPYVRVVGESWPLTLDRARIEAEALKIQAKYVPDLVPKVYHYDEELAVTVME  111 (401)
T ss_pred             eEcCCCceEEEEEEEeCCCCeEEEEEecCcccccccccccccHHHHHHHHHHHHHHHhhCCCCCCeEEEECCCCCEEEEe
Confidence            34578999999999984 4 4899998531         124567788888888763   35677888887778899999


Q ss_pred             ecCCCC
Q 005680          409 YMPNGN  414 (683)
Q Consensus       409 y~~ggs  414 (683)
                      |+++..
T Consensus       112 ~L~~~~  117 (401)
T PRK09550        112 DLSDHK  117 (401)
T ss_pred             cCCCcc
Confidence            998643

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=97.57  E-value=0.00051  Score=72.62  Aligned_cols=147  Identities=13%  Similarity=0.203  Sum_probs=87.0

Q ss_pred             cccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCC--ccceeccc--------ccceeEEEeecCC
Q 005680          343 RLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPH--LVAVMGCC--------SELKCIVFEYMPN  412 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~Hpn--IV~l~g~~--------~~~~~LV~Ey~~g  412 (683)
                      +.+.+|....+|+...++..+++|+... .....+..|+.++..+.+.+  +.+++...        .+..++|++|++|
T Consensus        20 ~~i~~G~~n~~y~v~~~~~~~vLr~~~~-~~~~~~~~e~~~l~~L~~~g~~vp~~i~~~~g~~~~~~~~~~~~l~~~i~G   98 (296)
T cd05153          20 EGISAGIENTNYFVTTDSGRYVLTLFEK-VSAEELPFFLALLDHLAERGLPVPRPIADRDGEYLSELAGKPAALVEFLAG   98 (296)
T ss_pred             ecccCccccceEEEEeCCCcEEEEEcCC-CChHhccHHHHHHHHHHHCCCCCCccccCCCCcEeeeeCCceEEEEEeCCC
Confidence            3445566678999887777899999865 45567788898888885332  44544432        1245799999998


Q ss_pred             CCchhh--------------hhhcccccccc-cccccCCHHHHH----------HHHHHHHhhhhhhcc----CCCCcEE
Q 005680          413 GNLRDK--------------LFTSQRNYKNC-SRARALRWLDRI----------HIAHEVCLGLSFLHS----TEPRPIV  463 (683)
Q Consensus       413 gsL~~~--------------L~~~~~~~~~~-~~~~~L~~~~~~----------~I~~qIa~aL~yLH~----~~~~~Ii  463 (683)
                      .++...              |+......... .......|....          .....+..++.++-.    ..|.+++
T Consensus        99 ~~~~~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~l~  178 (296)
T cd05153          99 EHLTRPTAAHCRQIGEALARLHLAAQSFPGERNNLRGLAWIRELGKDLLPLLSAEDRALLADELARQDAFDPSDLPRGVI  178 (296)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhccCCccCCCcCCcHHHHHHHHHhccccCHHHHHHHHHHHHHHHhhhhhcCCCcCC
Confidence            776430              00000000000 001112222111          011112233334332    2235799


Q ss_pred             eccCCCCcccccCCCcEEEecCCCccc
Q 005680          464 HGSLTPSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       464 HrDLKP~NILld~~~~~KL~DFGla~~  490 (683)
                      |+|+.|.|||++.++.+.|+||+.+..
T Consensus       179 HgD~~~~Nil~~~~~~~~iIDfe~a~~  205 (296)
T cd05153         179 HADLFRDNVLFDGDELSGVIDFYFACT  205 (296)
T ss_pred             ccCcCcccEEEeCCceEEEeehhhhcC
Confidence            999999999999988789999998754

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=0.00015  Score=81.12  Aligned_cols=78  Identities=26%  Similarity=0.428  Sum_probs=70.0

Q ss_pred             CCCCCCCCccccccccccccCCCccc-CCCcchhhHHHHHHHcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHhhcCC
Q 005680          602 KEDSNDVPSVFICPIFQEVMKTPHVA-ADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNKQSS  680 (683)
Q Consensus       602 sesss~~Ps~f~cPIs~elm~dPvv~-~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN~~lr~~I~~w~~~~~~  680 (683)
                      .++...+|++|..|+...+|.|||+. ..+.|.+|+.|..++-. ..|+|..+.||+-..++||-+||..|-.|..+.+.
T Consensus       845 eED~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~~  923 (929)
T COG5113         845 EEDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCKGQ  923 (929)
T ss_pred             hhhccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhcccc
Confidence            34578899999999999999999997 57889999999999864 68999999999999999999999999999866543

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=97.19  E-value=0.0078  Score=63.90  Aligned_cols=159  Identities=13%  Similarity=0.135  Sum_probs=91.3

Q ss_pred             ccCCceEEEEEEEC--------CeeEEEEEcCCCC-CHHHHHHHHHHHHhcCCCCc-cceecccccceeEEEeecCCCCc
Q 005680          346 CAGDWTNVYRGRLN--------HASVAIKTLNNGL-SEEDFQAKVSFLTAVRHPHL-VAVMGCCSELKCIVFEYMPNGNL  415 (683)
Q Consensus       346 G~G~fG~Vykg~~~--------g~~VAvK~l~~~~-~~~~~~~Ev~iL~~l~HpnI-V~l~g~~~~~~~LV~Ey~~ggsL  415 (683)
                      .+|-...||+....        +..|++|+..... ......+|..++..+....+ .++++++.+  .+|++|++|.++
T Consensus         7 ~gGltN~~y~v~~~~~~~~~~~~~~~vlRi~~~~~~~~~~r~~E~~~~~~l~~~g~~P~~~~~~~~--~~v~e~i~G~~l   84 (302)
T cd05156           7 SGGLTNAVYKVSLPDEDALSDEPRKVLLRVYGQSVELLIDRERELVVFARLSERNLGPKLYGIFPN--GRIEEFIPSRTL   84 (302)
T ss_pred             cCcccceeEEEEcCCcccccCCCCeEEEEEecCCCcceechHHHHHHHHHHHhCCCCCceEEEeCC--CchhheeCCCcC
Confidence            34666689998874        4789999976432 22456789888888853333 355666543  468999998877


Q ss_pred             hhhhhh--------------cccccccc-c-c--cccCCHHHHHH--------------------------HHHHHHhhh
Q 005680          416 RDKLFT--------------SQRNYKNC-S-R--ARALRWLDRIH--------------------------IAHEVCLGL  451 (683)
Q Consensus       416 ~~~L~~--------------~~~~~~~~-~-~--~~~L~~~~~~~--------------------------I~~qIa~aL  451 (683)
                      ......              -+...... . .  ..+.-|.....                          +...+..-+
T Consensus        85 ~~~~~~~~~~~~~ia~~L~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (302)
T cd05156          85 TTEELRDPDISAEIARRMAKLHSIVVPLSPEERDLTPAIWKLLKQWLDLAETVIEIVDSDSEKLLEVELSLFLEDEAKYL  164 (302)
T ss_pred             CHhHcCCcHHHHHHHHHHHHhhCCCCCCCCCcCcccchHHHHHHHHHHHhhhhhhhcccchhhhhhhhHHHHHHHHHHHH
Confidence            542100              00000000 0 0  00111111111                          111222223


Q ss_pred             hhhcc------CCCCcEEeccCCCCcccccCC----CcEEEecCCCccccCCCcccccccHHHHHHHHhh
Q 005680          452 SFLHS------TEPRPIVHGSLTPSSILLDRN----LVAKISGLGLNICDQLNVRSDIRAFGTLLLHLLT  511 (683)
Q Consensus       452 ~yLH~------~~~~~IiHrDLKP~NILld~~----~~~KL~DFGla~~~~~t~ksDVwSlGviL~eLlt  511 (683)
                      .+|-.      ..+..++|+|+.|.|||++.+    +.+.|+||..|..+  .+.   |-+|.++.|+..
T Consensus       165 ~~l~~~~~~~~~~~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~~~--~p~---~DlA~~~~e~~~  229 (302)
T cd05156         165 RFLLESTSEESGSPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYASYN--YRG---FDIANHFCEWMY  229 (302)
T ss_pred             HHHHhhccCCCCCCceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCCCC--CcH---HHHHHHHHHHHh
Confidence            33431      234679999999999999874    88999999988543  333   445666766553

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=97.08  E-value=0.0032  Score=63.26  Aligned_cols=123  Identities=17%  Similarity=0.234  Sum_probs=82.7

Q ss_pred             cccccCCceEEEEEEECCeeEEEEEcCCCC------------------CHHHHHHHHHHHHhcC------CCCccceecc
Q 005680          343 RLKCAGDWTNVYRGRLNHASVAIKTLNNGL------------------SEEDFQAKVSFLTAVR------HPHLVAVMGC  398 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g~~VAvK~l~~~~------------------~~~~~~~Ev~iL~~l~------HpnIV~l~g~  398 (683)
                      .++|+|+.-.||.-- .+...+||++....                  ...+..+|+.-...+.      +.+|.+++|+
T Consensus         7 ~~i~~G~~R~cy~HP-~dp~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~i~r~~G~   85 (199)
T PF10707_consen    7 DLIAQGGERDCYQHP-DDPNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSHIPRFYGF   85 (199)
T ss_pred             cccccCCCceEEECC-CCCCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCcccccccEeEE
Confidence            467889888888643 34557888887433                  2456777877766665      8889999999


Q ss_pred             ccc--ceeEEEeecCC------CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCC
Q 005680          399 CSE--LKCIVFEYMPN------GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPS  470 (683)
Q Consensus       399 ~~~--~~~LV~Ey~~g------gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~  470 (683)
                      ..+  ..-+|+|.+.+      -||.+++.           ...++. .....+.+.   ..||-.   ..|+.+||+|.
T Consensus        86 veT~~G~Glv~e~I~d~dG~~s~TL~~~l~-----------~~~~~~-~~~~~L~~f---~~~l~~---~~Iv~~dl~~~  147 (199)
T PF10707_consen   86 VETNLGLGLVVELIRDADGNISPTLEDYLK-----------EGGLTE-ELRQALDEF---KRYLLD---HHIVIRDLNPH  147 (199)
T ss_pred             EecCCceEEEEEEEECCCCCcCccHHHHHH-----------cCCccH-HHHHHHHHH---HHHHHH---cCCeecCCCcc
Confidence            876  67888888642      35666662           233554 333333333   345555   34999999999


Q ss_pred             cccccCC---C-cEEEec
Q 005680          471 SILLDRN---L-VAKISG  484 (683)
Q Consensus       471 NILld~~---~-~~KL~D  484 (683)
                      ||++...   . .+.|+|
T Consensus       148 NIv~~~~~~~~~~lvlID  165 (199)
T PF10707_consen  148 NIVVQRRDSGEFRLVLID  165 (199)
T ss_pred             cEEEEecCCCceEEEEEe
Confidence            9999543   2 577887

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>PLN02756 S-methyl-5-thioribose kinase

Probab=97.06  E-value=0.0058  Score=67.72  Aligned_cols=77  Identities=21%  Similarity=0.159  Sum_probs=55.8

Q ss_pred             cccccCCceEEEEEEECCeeEEEEEcC-----CC----CCHHHHHHHHHHHHhcC---CCCccceecccccceeEEEeec
Q 005680          343 RLKCAGDWTNVYRGRLNHASVAIKTLN-----NG----LSEEDFQAKVSFLTAVR---HPHLVAVMGCCSELKCIVFEYM  410 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g~~VAvK~l~-----~~----~~~~~~~~Ev~iL~~l~---HpnIV~l~g~~~~~~~LV~Ey~  410 (683)
                      +-+|.|....||+....+..|+||.-.     ..    ....+-..|...|..+.   ..++.++|++|.+..++||||+
T Consensus        38 ~eiggGn~N~VyrV~~~~~svVVKqa~p~~r~vga~wpl~~~R~~~Ea~aL~~~~~~~p~~VPkVy~~ded~~vlvME~L  117 (418)
T PLN02756         38 KEVGDGNLNFVYIVVSSSGSFVIKQALPYIRCIGESWPMTKERAYFEATALREHGRLCPDHVPEVYHFDRTMALIGMRYL  117 (418)
T ss_pred             EEcCCCceeeEEEEEcCCccEEEEeCCccccCCCccccCCccHHHHHHHHHHHhhhcCCCCCCeEEEECCCCCEEEEeec
Confidence            345778888999988877789999865     11    13445556677776663   3578889999999889999999


Q ss_pred             CC--CCchhhh
Q 005680          411 PN--GNLRDKL  419 (683)
Q Consensus       411 ~g--gsL~~~L  419 (683)
                      ++  ..+.+.+
T Consensus       118 ~~~~~ilr~~L  128 (418)
T PLN02756        118 EPPHIILRKGL  128 (418)
T ss_pred             CCcceehhhhh
Confidence            76  3455544

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=97.02  E-value=0.004  Score=62.52  Aligned_cols=116  Identities=16%  Similarity=0.285  Sum_probs=83.3

Q ss_pred             ccccccCCc-eEEEEEEECCeeEEEEEcC------CC-----------------CCHHHHHHHHHHHHhcC---CCCc--
Q 005680          342 FRLKCAGDW-TNVYRGRLNHASVAIKTLN------NG-----------------LSEEDFQAKVSFLTAVR---HPHL--  392 (683)
Q Consensus       342 ~~liG~G~f-G~Vykg~~~g~~VAvK~l~------~~-----------------~~~~~~~~Ev~iL~~l~---HpnI--  392 (683)
                      .+.+|.|.- |.||++..+|..+|+|++.      ..                 ....-|..|.+...+|+   +.++  
T Consensus        42 lefLg~g~~~~~V~kv~I~g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgRLke~~~e~~~A  121 (207)
T PF13095_consen   42 LEFLGHGSHDGYVFKVEIDGRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFGRLKEAGREGLWA  121 (207)
T ss_pred             eeecCCCCceeEEEEEEECCeEEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhHHHHhccccCceE
Confidence            466788999 9999999999999999933      00                 01134788998888884   4456  


Q ss_pred             cceeccc--c-c-----------------ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhh
Q 005680          393 VAVMGCC--S-E-----------------LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLS  452 (683)
Q Consensus       393 V~l~g~~--~-~-----------------~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~  452 (683)
                      |+++||.  . +                 ...||.||++...                   .++.    .-+.+|.+-|.
T Consensus       122 vkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~-------------------~~~~----~~~~~~~~dl~  178 (207)
T PF13095_consen  122 VKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDP-------------------PLQI----RDIPQMLRDLK  178 (207)
T ss_pred             EEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCcc-------------------ccch----hHHHHHHHHHH
Confidence            8999986  1 0                 1246777776432                   1222    23566777788


Q ss_pred             hhccCCCCcEEeccCCCCcccccCCCcEEEecCCCc
Q 005680          453 FLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN  488 (683)
Q Consensus       453 yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla  488 (683)
                      .+|.   .+|+-+|+++.|..     .-||+|||.+
T Consensus       179 ~~~k---~gI~~~Dv~~~ny~-----~G~lvDfs~~  206 (207)
T PF13095_consen  179 ILHK---LGIVPRDVKPRNYR-----GGKLVDFSSS  206 (207)
T ss_pred             HHHH---CCeeeccCcccccc-----CCEEEecccC
Confidence            8999   66999999999985     4689999965

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=96.92  E-value=0.0083  Score=65.46  Aligned_cols=75  Identities=16%  Similarity=0.133  Sum_probs=51.4

Q ss_pred             cccCCceEEEEEEECC--eeEEEEEcC------C---CCCHHHHHHHHHHHHhcC--CC-CccceecccccceeEEEeec
Q 005680          345 KCAGDWTNVYRGRLNH--ASVAIKTLN------N---GLSEEDFQAKVSFLTAVR--HP-HLVAVMGCCSELKCIVFEYM  410 (683)
Q Consensus       345 iG~G~fG~Vykg~~~g--~~VAvK~l~------~---~~~~~~~~~Ev~iL~~l~--Hp-nIV~l~g~~~~~~~LV~Ey~  410 (683)
                      +|.|....||++...+  +.|+||.-.      .   .....+...|...|....  -| .+.++|.+-.+...+|||++
T Consensus         3 igdGnlN~VfrV~~~~g~~svIVKQAlp~vRv~g~~wpl~~~R~~~E~~~L~~~~~~~P~~vP~vy~~D~e~~~~vMEdL   82 (370)
T TIGR01767         3 VGDGNLNLVFHVYDQEGDRAAIVKQALPYVRVVGESWPLTLDRARIESSALIRQGEHVPHLVPRIFHFDTEMAVTVMEDL   82 (370)
T ss_pred             CCCCceEEEEEEEcCCCCeeEEEEEcCHHHhhcCCCCCCCccHHHHHHHHHHHhhccCccccCeEEEEccccceehHhhC
Confidence            4678889999999853  689999754      1   233456677888887763  34 45567776677788999999


Q ss_pred             CCC-Cchhhh
Q 005680          411 PNG-NLRDKL  419 (683)
Q Consensus       411 ~gg-sL~~~L  419 (683)
                      +.. .|.+.|
T Consensus        83 ~~~~ilR~~L   92 (370)
T TIGR01767        83 SHHKIARKGL   92 (370)
T ss_pred             ccchHHHHHH
Confidence            643 343444

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=96.80  E-value=0.0072  Score=63.85  Aligned_cols=69  Identities=16%  Similarity=0.072  Sum_probs=42.6

Q ss_pred             cccCCceEEEEEEE-CCeeEEEEEcCCCCCHHHHHHHHHHHHhcC-C-CC-ccceecccccceeEEEeecCCCCc
Q 005680          345 KCAGDWTNVYRGRL-NHASVAIKTLNNGLSEEDFQAKVSFLTAVR-H-PH-LVAVMGCCSELKCIVFEYMPNGNL  415 (683)
Q Consensus       345 iG~G~fG~Vykg~~-~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~-H-pn-IV~l~g~~~~~~~LV~Ey~~ggsL  415 (683)
                      +++|-...||.... +|..+++|.-+.......+.+|..+|+.+. | |- +.+++..  +..+++|++++|..+
T Consensus        19 ~~~g~~~~v~~i~~~~g~~~VlR~p~~~~~~~~l~rE~~vL~~L~~~l~vpvP~~~~~--~~~~~~y~~i~G~p~   91 (276)
T cd05152          19 NESGLDFQVVFAKDTDGVPWVLRIPRRPDVSERAAAEKRVLALVRKHLPVQVPDWRVH--TPELIAYPKLPGVPA   91 (276)
T ss_pred             cCCcceeEEEEEEcCCCCeEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCCCCceeee--cCceEEEeccCCCcc
Confidence            34454455666654 588899998764444567899999999885 2 21 1222222  234567777777654

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=96.69  E-value=0.00084  Score=76.47  Aligned_cols=152  Identities=14%  Similarity=0.094  Sum_probs=106.5

Q ss_pred             ccCCceEEEEEEECC-eeEEEEEcCCCCCHHHHHHHHHHHHhcCCCC-ccceeccccc--ceeEEEeecCCC-Cchhhhh
Q 005680          346 CAGDWTNVYRGRLNH-ASVAIKTLNNGLSEEDFQAKVSFLTAVRHPH-LVAVMGCCSE--LKCIVFEYMPNG-NLRDKLF  420 (683)
Q Consensus       346 G~G~fG~Vykg~~~g-~~VAvK~l~~~~~~~~~~~Ev~iL~~l~Hpn-IV~l~g~~~~--~~~LV~Ey~~gg-sL~~~L~  420 (683)
                      ++|+++++||.+..- +....+.+...   ....-++++|.+++||| .|..++-+..  ..+++++++.+| +-.....
T Consensus       251 vK~altknpKkRptaeklL~h~fvs~~---l~~rl~~eLLdK~n~P~~~v~~~~d~~~E~~~~i~~~i~s~~rs~~~~~~  327 (829)
T KOG0576|consen  251 VKGALTKNPKKRPTAEKLLQHPFVSQT---LSRRLAIELLDKVNNPNPVVRYLEDYDGEDYLWIPMRICSTGRSSALEMT  327 (829)
T ss_pred             HHHHhcCCCccCCChhhheeceeeccc---hhhHHHHHHHHHccCCCCcccccccCCcccccchhhhhhcCCccccccCC
Confidence            578999999988632 22334444322   45567899999999999 6777766643  778999999877 2222221


Q ss_pred             hcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----------
Q 005680          421 TSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----------  490 (683)
Q Consensus       421 ~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----------  490 (683)
                               .....+...+...+...-..+|+|||+.   .=+|+|    |||..+ +..+..||+....          
T Consensus       328 ---------~se~~~~~~~~~~~~r~et~~l~~l~~~---~~~~~d----~~l~s~-~~~~~~~~~v~~~L~~~~~~~t~  390 (829)
T KOG0576|consen  328 ---------VSEIALEQYQFAYPLRKETRPLAELHSS---YKVHRD----NILGSE-EEVKLLDFAVPPQLTRTMKPRTA  390 (829)
T ss_pred             ---------hhhHhhhhhhhhhhhhhhcccccccccc---cccCcc----cccccc-cccccccccCCcccCcccccccC
Confidence                     1233344555566777888999999993   248888    887654 6789999987632          


Q ss_pred             --------------cCCCcccccccHHHHHHHHhhCCCCch
Q 005680          491 --------------DQLNVRSDIRAFGTLLLHLLTGRNWAG  517 (683)
Q Consensus       491 --------------~~~t~ksDVwSlGviL~eLltG~~Pf~  517 (683)
                                    +.+....|+||+|+-..+|.-|-+|-.
T Consensus       391 ~~~~~~~~pev~~~~~~~~~p~~~~~~~~~~~~ap~~pPr~  431 (829)
T KOG0576|consen  391 IGTPEPLAPEVIQENTIDGCPDSGSLAVSAIQMAPGLPPRS  431 (829)
T ss_pred             CCCCCCCCchhhcccccccCCCccCCCcchhhcCCCCCCCC
Confidence                          346678899999998888888877653

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=96.59  E-value=0.019  Score=62.22  Aligned_cols=142  Identities=18%  Similarity=0.310  Sum_probs=83.9

Q ss_pred             ceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCc---cc---e----eccccc--ceeEEEeecCCCCchh
Q 005680          350 WTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHL---VA---V----MGCCSE--LKCIVFEYMPNGNLRD  417 (683)
Q Consensus       350 fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnI---V~---l----~g~~~~--~~~LV~Ey~~ggsL~~  417 (683)
                      -..||+....+..+++|+.+......++.-|...|..|.-..|   +.   +    +.....  ..+-|++|++|..+..
T Consensus        38 eN~~f~~~~~~g~~iLki~~~~~~~~~i~~el~~l~~La~~~i~v~~Pl~~~dG~~l~~~~~~~r~a~lf~~l~G~~~~~  117 (331)
T COG2334          38 ENSNFRVQTEDGRYILKIYRPGWTRAEIPFELALLQHLAERGIPVPAPLPSLDGELLEALSGGPRPAALFEYLPGRPLER  117 (331)
T ss_pred             cCceEEEEecCCCeEEEEecCCCCHHHHHHHHHHHHHHHHcCCCCCCCccCCCcchhhhccCCceeEEEEEecCCcCcCC
Confidence            4568998886666699998866677888888888888732221   22   2    222333  5678999999988883


Q ss_pred             -h--------------hhhcccccc--cccccccCCHHH-------------HHHHHHHHHhhhhhhcc----CCCCc--
Q 005680          418 -K--------------LFTSQRNYK--NCSRARALRWLD-------------RIHIAHEVCLGLSFLHS----TEPRP--  461 (683)
Q Consensus       418 -~--------------L~~~~~~~~--~~~~~~~L~~~~-------------~~~I~~qIa~aL~yLH~----~~~~~--  461 (683)
                       .              |+...+...  .........|..             ......++...+..+..    .-|..  
T Consensus       118 ~~~~~~~~~lG~~LgrlH~a~~~f~~~~p~~~~~~~w~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~lp~~~~  197 (331)
T COG2334         118 DDNAEQLEELGRMLGRLHLALRGFPFERPNALRRLEWDILEPRALLRLDLVEPEDLRAALLAALDRLLARLPAHLPALGD  197 (331)
T ss_pred             CCcHHHHHHHHHHHHHHHHHhCcCCccCCCcccccchhhhcchhhhhhcccCchhhHHHHHHHHHHHHhhchhhCCcccc
Confidence             1              111111111  001111234431             01122233333333332    22233  


Q ss_pred             -EEeccCCCCcccccCCC-cEEEecCCCcccc
Q 005680          462 -IVHGSLTPSSILLDRNL-VAKISGLGLNICD  491 (683)
Q Consensus       462 -IiHrDLKP~NILld~~~-~~KL~DFGla~~~  491 (683)
                       +||+|+.|.|||++.+. .+.++|||-+..+
T Consensus       198 ~iIH~D~~~~NVl~d~~~~~~g~iDFdDa~~~  229 (331)
T COG2334         198 QIIHGDLHPDNVLFDDDTDVSGFIDFDDAGYG  229 (331)
T ss_pred             eeeecCCCccceeEcCCCCeeeEEEccccccc
Confidence             99999999999999887 4999999988653

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=96.58  E-value=0.0016  Score=78.59  Aligned_cols=170  Identities=21%  Similarity=0.230  Sum_probs=118.9

Q ss_pred             HHHHHHHHHhcCCCCccceeccccc----c--eeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhh
Q 005680          377 FQAKVSFLTAVRHPHLVAVMGCCSE----L--KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLG  450 (683)
Q Consensus       377 ~~~Ev~iL~~l~HpnIV~l~g~~~~----~--~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~a  450 (683)
                      ..-|...+.++.|+|++.+++|..+    .  ..+..++|..-++...+          .....++....+.+..++..|
T Consensus       229 ~E~e~~~l~k~~~~n~~~~~~~~le~~~~g~~~~v~~~~~s~~~~~~~~----------q~v~~i~~~~~r~~~~~~~~G  298 (1351)
T KOG1035|consen  229 TEIELESLSKIAHDNLGGYFVYGLERLFRGIVLDVLQEICSKVELRSLL----------QSVGSIPLETLRILHQKLLEG  298 (1351)
T ss_pred             HHHHHHHHHhhccccccceeEEeehhhcchHHHHHHHhhcCccchHHHH----------hhccccCHHHHHHHHHHHhhh
Confidence            3456677888899999999988754    1  23455888888888888          455778999999999999999


Q ss_pred             hhhhccCCCCcEEeccCCCC---cccccCCCcEEEe--cCCCccc--------------------------cCCCccccc
Q 005680          451 LSFLHSTEPRPIVHGSLTPS---SILLDRNLVAKIS--GLGLNIC--------------------------DQLNVRSDI  499 (683)
Q Consensus       451 L~yLH~~~~~~IiHrDLKP~---NILld~~~~~KL~--DFGla~~--------------------------~~~t~ksDV  499 (683)
                      |.|+|+..   ..|.-+..+   +-..+..+...++  ||+.+..                          .......|+
T Consensus       299 L~~~h~~~---l~~v~L~~s~~~~~~~~~e~~~~~sl~~~~ss~~l~d~~~~~~~~~~~~~~~~e~~~~~~~~~~r~~dL  375 (1351)
T KOG1035|consen  299 LAYLHSLS---LEHVVLSASSSKESTVDGEGVVAISLSDFDSSKPLPDNEKSFSDLLAEIRNADEDLKENTAKKSRLTDL  375 (1351)
T ss_pred             HHHHHHhc---cceeEEecccccccccCccceeecchhhhcccccCCCcccchhhcCccccccccccccccchhhhhhHH
Confidence            99999953   445444444   4445666777777  8877643                          112234699


Q ss_pred             ccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHH
Q 005680          500 RAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       500 wSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                      |.+|..+..+..|..+-...        .....+++.       .....+.+...+|+..+  +..|+++.+++...
T Consensus       376 ~~lgll~~~~~~~~~i~~~~--------~~~~~~l~~-------~~~~~~~d~~~~~~~~~--~~~Rl~~~~ll~~~  435 (1351)
T KOG1035|consen  376 WCLGLLLLQLSQGEDISEKS--------AVPVSLLDV-------LSTSELLDALPKCLDED--SEERLSALELLTHP  435 (1351)
T ss_pred             HHHHHHHhhhhhcCcccccc--------cchhhhhcc-------ccchhhhhhhhhhcchh--hhhccchhhhhhch
Confidence            99999999999987643211        111111111       11126778889999888  77999988887654

>PRK06148 hypothetical protein; Provisional

Probab=96.53  E-value=0.044  Score=68.06  Aligned_cols=162  Identities=14%  Similarity=0.182  Sum_probs=88.9

Q ss_pred             cccccCCceEEEEEEE-CCeeEEEEEcCCCCCHHHHHHHHHHHHhcC-------CCCcccee-ccc----c--c---cee
Q 005680          343 RLKCAGDWTNVYRGRL-NHASVAIKTLNNGLSEEDFQAKVSFLTAVR-------HPHLVAVM-GCC----S--E---LKC  404 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~-~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~-------HpnIV~l~-g~~----~--~---~~~  404 (683)
                      +.++ |..-.+|+... +|..+++|+.+..........|..+|..|.       -|.+++.. |-.    .  +   ..+
T Consensus        31 ~~L~-s~~d~nf~v~~~~g~~yVLKi~~~~~~~~~~~~q~~~L~hL~~~~~glpvP~~i~t~~G~~~~~v~~~~G~~~~v  109 (1013)
T PRK06148         31 TPLD-GERDLNFRLTTDDGADYILKIVNPSEPRVESDFQTAALDHLAAVAPDLPVPRLIPSLSGASLASAQDPDGEPRLL  109 (1013)
T ss_pred             eecC-CcCCceEEEEeCCCCeEEEEEcCCccchhHHHHHHHHHHHHHhhCCCCCcCeeeecCCCCeEEEeecCCCceEEE
Confidence            3443 44677898876 577899999986555555566666776552       22333221 111    1  1   346


Q ss_pred             EEEeecCCCCchhhh-----------------hhcccccccccccccCCHHH-----------------HHHHHHHHHhh
Q 005680          405 IVFEYMPNGNLRDKL-----------------FTSQRNYKNCSRARALRWLD-----------------RIHIAHEVCLG  450 (683)
Q Consensus       405 LV~Ey~~ggsL~~~L-----------------~~~~~~~~~~~~~~~L~~~~-----------------~~~I~~qIa~a  450 (683)
                      -+++|++|..|.+..                 +..-...........+.|..                 ...++.++...
T Consensus       110 rLl~~l~G~~l~~~~~~t~~~~~~lG~~larlh~al~~F~~p~~~r~~~Wdl~~~~~l~~~l~~i~d~~~r~~l~~~~~~  189 (1013)
T PRK06148        110 RLLSWLPGTPLAEAAPRTEALLDNLGRALGRLDRALQGFMHPGALRDLDWDLRHAGRARDRLHFIDDPEDRALVERFLAR  189 (1013)
T ss_pred             EEEeccCCCcHHhccCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccccchhhhhhhhhcCCHHHHHHHHHHHHH
Confidence            789999998776511                 00000000001112233321                 11222233322


Q ss_pred             hh-----hhccCCCCcEEeccCCCCcccccCCC--cEE-EecCCCccccCCCcccccccHHHHHHHHhh
Q 005680          451 LS-----FLHSTEPRPIVHGSLTPSSILLDRNL--VAK-ISGLGLNICDQLNVRSDIRAFGTLLLHLLT  511 (683)
Q Consensus       451 L~-----yLH~~~~~~IiHrDLKP~NILld~~~--~~K-L~DFGla~~~~~t~ksDVwSlGviL~eLlt  511 (683)
                      +.     .|.. -|..+||+|+.+.|||++.++  .+. |+|||.+...     .=||-+++.+..++.
T Consensus       190 ~~~~v~p~l~~-Lp~~vIHgDln~~NiLv~~~~~~~isGiIDFgDa~~~-----~~v~DLAialay~~~  252 (1013)
T PRK06148        190 FERNVAPRLAA-LPAQVIHNDANDYNILVDADDGERISGLIDFGDAVHA-----PRICEVAIAAAYAIL  252 (1013)
T ss_pred             HHHHHHHHHhc-CCcceECCCCCcccEEEcCCCCcceEEEEECcccccc-----cHHHHHHHHHHHHhc
Confidence            21     2222 246799999999999998875  444 9999987543     235667777754443

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.51  E-value=0.0011  Score=52.89  Aligned_cols=44  Identities=23%  Similarity=0.480  Sum_probs=30.7

Q ss_pred             ccccccccccccCCCccc-CCCcchhhHHHHHHH-cCCCCCCCCCc
Q 005680          610 SVFICPIFQEVMKTPHVA-ADGFSYELEAMEEWL-GMGHDTSPMTN  653 (683)
Q Consensus       610 s~f~cPIs~elm~dPvv~-~dG~TyEr~aI~~wl-~~g~~tsP~T~  653 (683)
                      ..+.|||+...+.+||.. .-|++||+++|.+|+ ..+...||+++
T Consensus        10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G   55 (57)
T PF11789_consen   10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG   55 (57)
T ss_dssp             --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred             eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence            457899999999999997 569999999999999 34456788764

>PLN02236 choline kinase

Probab=96.48  E-value=0.017  Score=63.07  Aligned_cols=155  Identities=13%  Similarity=0.095  Sum_probs=87.5

Q ss_pred             cCCceEEEEEEEC------CeeEEEEEcCCCCC-HHHHHHHHHHHHhcCCCCcc-ceecccccceeEEEeecCCCCchhh
Q 005680          347 AGDWTNVYRGRLN------HASVAIKTLNNGLS-EEDFQAKVSFLTAVRHPHLV-AVMGCCSELKCIVFEYMPNGNLRDK  418 (683)
Q Consensus       347 ~G~fG~Vykg~~~------g~~VAvK~l~~~~~-~~~~~~Ev~iL~~l~HpnIV-~l~g~~~~~~~LV~Ey~~ggsL~~~  418 (683)
                      +|-...+|++...      +..|++|+...... .-...+|..++..+..-++. ++++.+.+.  .|++|+++.+|...
T Consensus        46 gGlTN~~y~v~~~~~~~~~~~~~v~Ri~g~~t~~~idR~~E~~~~~~l~~~gl~P~~~~~~~~g--~v~efi~g~~l~~~  123 (344)
T PLN02236         46 GAMTNEVFQIKWPTKEGNLGRKVLVRIYGEGVELFFDRDDEIRTFECMSRHGQGPRLLGRFPNG--RVEEFIHARTLSAA  123 (344)
T ss_pred             CcccceeEEEEeCCCCCCCCCeEEEEEccCCCCeeechHHHHHHHHHHHHcCCCCceEEEECCc--eEEEeeCCCCCCHH
Confidence            4667789998752      26799998753321 11236788888888544443 556666544  68999988777522


Q ss_pred             --------------hhhcccccccccccccCCHHHHHHHHHHHH-----------------h---hhh-hhcc-CCCCcE
Q 005680          419 --------------LFTSQRNYKNCSRARALRWLDRIHIAHEVC-----------------L---GLS-FLHS-TEPRPI  462 (683)
Q Consensus       419 --------------L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa-----------------~---aL~-yLH~-~~~~~I  462 (683)
                                    |..-+....+ .......|.....++.++.                 .   .|. .+.. ..+..+
T Consensus       124 ~l~~~~~~~~ia~~L~~lH~~~~~-~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~  202 (344)
T PLN02236        124 DLRDPEISALIAAKLREFHSLDMP-GPKNVLLWDRLRNWLKEAKNLCSPEEAKEFRLDSLEDEINLLEKELSGDDQEIGF  202 (344)
T ss_pred             HcCChHHHHHHHHHHHHHhCCCCC-CCCCchHHHHHHHHHHHHHhhcCcchhhhcCHHHHHHHHHHHHHHhcccCCCceE
Confidence                          0000000000 0111222333333332211                 1   111 1221 223568


Q ss_pred             EeccCCCCcccccC-CCcEEEecCCCccccCCCcccccccHHHHHHHH
Q 005680          463 VHGSLTPSSILLDR-NLVAKISGLGLNICDQLNVRSDIRAFGTLLLHL  509 (683)
Q Consensus       463 iHrDLKP~NILld~-~~~~KL~DFGla~~~~~t~ksDVwSlGviL~eL  509 (683)
                      +|+|+++.|||++. ++.+.|+||..|..+.  +   .|-+|..+.|.
T Consensus       203 cH~Dl~~~Nil~~~~~~~~~lID~Eya~~~~--~---~~Dia~~~~e~  245 (344)
T PLN02236        203 CHNDLQYGNIMIDEETRAITIIDYEYASYNP--V---AYDIANHFCEM  245 (344)
T ss_pred             EeCCCCcCcEEEeCCCCcEEEEeehhccccc--h---HHHHHHHHHHH
Confidence            99999999999976 4789999999885432  2   35566666664

>PRK12396 5-methylribose kinase; Reviewed

Probab=96.42  E-value=0.011  Score=65.39  Aligned_cols=77  Identities=23%  Similarity=0.253  Sum_probs=53.7

Q ss_pred             cccccCCceEEEEEEEC--CeeEEEEEcC----C----CCCHHHHHHHHHHHHhcC--CC-CccceecccccceeEEEee
Q 005680          343 RLKCAGDWTNVYRGRLN--HASVAIKTLN----N----GLSEEDFQAKVSFLTAVR--HP-HLVAVMGCCSELKCIVFEY  409 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~--g~~VAvK~l~----~----~~~~~~~~~Ev~iL~~l~--Hp-nIV~l~g~~~~~~~LV~Ey  409 (683)
                      +-+|.|.-..||++.+.  ++.|+||.-.    .    ..+.++...|..+|+...  -| ++.++|.+-.+...+|||+
T Consensus        35 ~eigdGnlN~VfrV~~~~~~~svIVKQAlp~vRv~~swpL~~~R~~~E~~aL~~~~~~~P~~VP~vy~~D~e~~~~vMEd  114 (409)
T PRK12396         35 KEIGDGNLNYVFRVWDEQKNISVIVKQAGDTARISDEFKLSTNRIRIESDVLQLEEELAPGLVPKVYLFDSVMNCCVMED  114 (409)
T ss_pred             eEcCCCceEEEEEEeeCCCCceEEEEeccHhhccCCCCCCChHHHHHHHHHHHHHHhhCCCcCCeEEEECcHHhhHHHHh
Confidence            34577888999999984  6789999753    1    234567788888888763  35 4556777666678899999


Q ss_pred             cCCC-Cchhhh
Q 005680          410 MPNG-NLRDKL  419 (683)
Q Consensus       410 ~~gg-sL~~~L  419 (683)
                      ++.. .|.+.|
T Consensus       115 L~~~~ilR~~L  125 (409)
T PRK12396        115 LSDHTILRTAL  125 (409)
T ss_pred             CcccHHHHHHH
Confidence            9642 344443

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=96.41  E-value=0.025  Score=60.82  Aligned_cols=144  Identities=16%  Similarity=0.191  Sum_probs=78.4

Q ss_pred             EEEEEEECCeeEEEEEcCC----CCCHHHHHHHHHHHHhcCC--CCccceecccccce----eEEEeecCCCCchhhhh-
Q 005680          352 NVYRGRLNHASVAIKTLNN----GLSEEDFQAKVSFLTAVRH--PHLVAVMGCCSELK----CIVFEYMPNGNLRDKLF-  420 (683)
Q Consensus       352 ~Vykg~~~g~~VAvK~l~~----~~~~~~~~~Ev~iL~~l~H--pnIV~l~g~~~~~~----~LV~Ey~~ggsL~~~L~-  420 (683)
                      .+|....+++++++. .+.    ........+|..++..+.-  .-+...+++|.+..    |.||+|+.|..+.+.+. 
T Consensus        40 ~t~~~~~~~~~~vlR-~P~~~~~~~~~~~~~re~~~i~~l~~~~vP~p~~~~~~~~~~~g~pf~v~~~veGe~~~~~~~~  118 (321)
T COG3173          40 DTFRLGDTGQKYVLR-KPPRGDPVESAHDEKREYRVIAALLDVDVPVPRAFGLCGEGYLGTPFYVMEWVEGEVVWSALPP  118 (321)
T ss_pred             ceEEEecCCceEEEe-cCCccccchhhhHHHhHHHHHHHhcCCCCCCcccccccccCCCCCceEEEEEecceeccCcCCc
Confidence            344444457888888 331    1223456678888887742  23345577886644    99999999843333221 


Q ss_pred             -----------------hccccc-----ccc-----cccccCCHHHHHHHHH--------HHHhhhhhhccC-----CCC
Q 005680          421 -----------------TSQRNY-----KNC-----SRARALRWLDRIHIAH--------EVCLGLSFLHST-----EPR  460 (683)
Q Consensus       421 -----------------~~~~~~-----~~~-----~~~~~L~~~~~~~I~~--------qIa~aL~yLH~~-----~~~  460 (683)
                                       ..+...     ...     .....-.|....+.+.        ....-..||+.+     ++.
T Consensus       119 ~~~~~~~~~~~l~~~La~LH~ida~~~~~~g~~~~~~~rql~~~~~~~~~~~~~~~~~~p~~~~~~~Wl~~~~p~~~~~~  198 (321)
T COG3173         119 ESLGRQFALDALADFLAELHSIDAAGLPDPGKPNAYRGRQLARWDDEYRRAKKELGGRIPLADRLIKWLEANRPPWAGPP  198 (321)
T ss_pred             ccchHHHHHHHHHHHHHHHhCCCCcCCCCCCccCccccchhhHHHHHHHHHHHhccCCCchHHHHHHHHHhcCCCcCCCc
Confidence                             110000     000     0000111111111000        011112333333     235


Q ss_pred             cEEeccCCCCcccccCCCcEEEecCCCccccCCCcccc
Q 005680          461 PIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVRSD  498 (683)
Q Consensus       461 ~IiHrDLKP~NILld~~~~~KL~DFGla~~~~~t~ksD  498 (683)
                      .++|+|+.+.||+++..+-+=|.||+++..+  ++..|
T Consensus       199 ~lvHGD~~~gNlii~~~~~~gVlDwe~~~lG--DP~~D  234 (321)
T COG3173         199 VLVHGDYRPGNLIIDPGRPTGVLDWELATLG--DPLED  234 (321)
T ss_pred             eeeeCCcccCCEEEeCCCeeEEEeccccccC--CcHHH
Confidence            7999999999999999888999999998654  45555

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=96.30  E-value=0.017  Score=62.54  Aligned_cols=138  Identities=13%  Similarity=0.092  Sum_probs=91.1

Q ss_pred             ccccccccCCceEEEEEEE-CCeeEEEEEcCCC------C-----------------CHH-----HHHHHHHHHHhcCCC
Q 005680          340 ERFRLKCAGDWTNVYRGRL-NHASVAIKTLNNG------L-----------------SEE-----DFQAKVSFLTAVRHP  390 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~-~g~~VAvK~l~~~------~-----------------~~~-----~~~~Ev~iL~~l~Hp  390 (683)
                      +.+..|..|--+.||.+.- +|..+|||+.+..      .                 .+.     -...|+..|.+|+..
T Consensus       147 ~inGCiSTGKEANVYHat~~dG~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck~NPRKMVk~WAEKE~RNLkRl~~a  226 (520)
T KOG2270|consen  147 EINGCISTGKEANVYHATEEDGSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKHNPRKMVKTWAEKEMRNLKRLNNA  226 (520)
T ss_pred             ecccccccCccceeEeeecCCCceEEEEEEeeeEEEEechhhhccceeeeecccccCCcHHHHHHHHHHHHHHHHHHHhc
Confidence            3344556777889999987 7899999987510      0                 011     134578888888665


Q ss_pred             CccceecccccceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCC
Q 005680          391 HLVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPS  470 (683)
Q Consensus       391 nIV~l~g~~~~~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~  470 (683)
                      .|..---.....-.|||+|+.......-.          -....++...+..+-.+++.-+.-|-..+  ++||.||.--
T Consensus       227 GIP~PePIlLk~hVLVM~FlGrdgw~aPk----------LKd~~ls~~ka~~~Y~~~v~~MR~lY~~c--~LVHADLSEf  294 (520)
T KOG2270|consen  227 GIPCPEPILLKNHVLVMEFLGRDGWAAPK----------LKDASLSTSKARELYQQCVRIMRRLYQKC--RLVHADLSEF  294 (520)
T ss_pred             CCCCCCceeeecceEeeeeccCCCCcCcc----------cccccCChHHHHHHHHHHHHHHHHHHHHh--ceeccchhhh
Confidence            54311111122457999999532211111          24456777777777778877777776543  5999999999


Q ss_pred             cccccCCCcEEEecCCCccc
Q 005680          471 SILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       471 NILld~~~~~KL~DFGla~~  490 (683)
                      |+|+ .+|.+.|+|.+-+..
T Consensus       295 N~Ly-hdG~lyiIDVSQSVE  313 (520)
T KOG2270|consen  295 NLLY-HDGKLYIIDVSQSVE  313 (520)
T ss_pred             hheE-ECCEEEEEEcccccc
Confidence            9987 678999999987743

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=96.30  E-value=0.0085  Score=67.18  Aligned_cols=103  Identities=17%  Similarity=0.234  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHhcCCCCccceeccccc---ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhh
Q 005680          374 EEDFQAKVSFLTAVRHPHLVAVMGCCSE---LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLG  450 (683)
Q Consensus       374 ~~~~~~Ev~iL~~l~HpnIV~l~g~~~~---~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~a  450 (683)
                      ...+.--...++.+.|+|+..++.+-..   ...+|+|++ +.||++.+..+          . +-..      ...+. 
T Consensus        26 s~~ilgr~~~lktl~~~~l~~yl~~~r~~~~r~IVV~e~~-~~Sled~~~~~----------~-l~~~------s~~~~-   86 (725)
T KOG1093|consen   26 SIQILGRFQYLKSLQHDNLCQYLDFSRGKHERVIVVMEHY-TMSLEDILKTG----------N-LKDE------SLLAH-   86 (725)
T ss_pred             HHHHhhhhHHHHhhcCccceeeEeeecCccceEEEEehhh-ccchHHHHHhc----------c-cchh------hhccc-
Confidence            3455666778999999999999988754   568899999 58999998433          1 1111      11111 


Q ss_pred             hhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccccCCCcccccccHHHHHHHHhhCCCCc
Q 005680          451 LSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVRSDIRAFGTLLLHLLTGRNWA  516 (683)
Q Consensus       451 L~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~~~~t~ksDVwSlGviL~eLltG~~Pf  516 (683)
                                ++.|-     ||+...+   -+.|.+   ....++|+||||+|.++.++.-|..-+
T Consensus        87 ----------~~~~~-----~~~~~td---~~~t~~---~~~~~pKsdVwsl~~i~~el~L~~~l~  131 (725)
T KOG1093|consen   87 ----------GVLHL-----NIIYITD---HFLTKY---PSPIGPKSDVWSLGFIILELYLGISLE  131 (725)
T ss_pred             ----------cccee-----hhhhccc---cccccC---CCCCCcchhhhhHHHHHHHHHHhhHHH
Confidence                      13322     2222111   112222   123447999999999999999987543

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=96.12  E-value=0.016  Score=61.68  Aligned_cols=70  Identities=17%  Similarity=0.237  Sum_probs=45.3

Q ss_pred             cccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhcC---CCCccceeccc--ccceeEEEeecCCC
Q 005680          343 RLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVR---HPHLVAVMGCC--SELKCIVFEYMPNG  413 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~---HpnIV~l~g~~--~~~~~LV~Ey~~gg  413 (683)
                      .-+++|....+|+...++..+.||+-. ......|..|..-|+.|.   --.+.+++++.  .+..+|||||++.+
T Consensus        23 ~~v~GG~i~~a~~~~~~~~~~FvK~~~-~~~~~~f~~Ea~gL~~L~~~~~~~vP~vi~~G~~~~~~fLlle~l~~~   97 (288)
T PF03881_consen   23 EPVSGGDINEAYRLDTDGGSYFVKVNS-ESGRDMFEGEAEGLKALAEANPIRVPKVIAWGEYDDDAFLLLEFLEMG   97 (288)
T ss_dssp             EEE--SSSSEEEEEETTS-EEEEEEEE-GGGCCHHHHHHHHHHHHCHTTTSBS--EEEEEE-SSCCEEEEE-----
T ss_pred             EecCCCChhheEEEECCCccEEEEecC-hhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEEeecCCceEEEEeecCC
Confidence            344568899999988888999999976 334467899999888883   33455666654  44679999999876

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=96.05  E-value=0.042  Score=58.36  Aligned_cols=63  Identities=13%  Similarity=0.200  Sum_probs=40.7

Q ss_pred             EEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCC--Cccceeccc--------ccceeEEEeecCCCCch
Q 005680          352 NVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHP--HLVAVMGCC--------SELKCIVFEYMPNGNLR  416 (683)
Q Consensus       352 ~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~Hp--nIV~l~g~~--------~~~~~LV~Ey~~ggsL~  416 (683)
                      .||+...++..+++|+++.  ....+..++.++..|...  .+++++..-        .+..++|++|++|.++.
T Consensus        11 ~v~~v~t~~g~~~LK~~~~--~~~~~~~~~~~~~~L~~~g~~vp~~i~t~~g~~~~~~~~~~~~l~~~i~G~~~~   83 (313)
T TIGR02906        11 NVYKVETDSGNKCLKKINY--PPERLLFILGAQEHLRKNGFNIPKILKTKDGELYVKYNGDLYVLTEWIEGRECD   83 (313)
T ss_pred             cEEEEEeCCCCeEEEEcCC--CHHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEehhccCcCCC
Confidence            4899887666799999853  234566677777766432  333443321        22568999999986654

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=95.96  E-value=0.038  Score=59.87  Aligned_cols=156  Identities=10%  Similarity=0.131  Sum_probs=87.3

Q ss_pred             cCCceEEEEEEECC-----eeEEEEEcCCCCC-HHHHHHHHHHHHhcCCCCc-cceecccccceeEEEeecCCCCchhh-
Q 005680          347 AGDWTNVYRGRLNH-----ASVAIKTLNNGLS-EEDFQAKVSFLTAVRHPHL-VAVMGCCSELKCIVFEYMPNGNLRDK-  418 (683)
Q Consensus       347 ~G~fG~Vykg~~~g-----~~VAvK~l~~~~~-~~~~~~Ev~iL~~l~HpnI-V~l~g~~~~~~~LV~Ey~~ggsL~~~-  418 (683)
                      +|-...+|+....+     ..|++|+...... .-.-.+|..++..+..-++ .++++++.+.  +|.+|++|.+|... 
T Consensus        24 gGlTN~~~~v~~~~~~~~~~~~v~Ri~g~~t~~~IdR~~E~~il~~l~~~gl~P~~l~~~~~G--~i~~fi~g~~l~~~~  101 (330)
T PLN02421         24 GGITNLLLKVSVKEENGNEVSVTVRLFGPNTDYVIDRERELQAIKYLSAAGFGAKLLGVFGNG--MIQSFINARTLTPSD  101 (330)
T ss_pred             CcccceEEEEEecCCCCCCceEEEEEecCCcCeEechHHHHHHHHHHHhcCCCCceeEEeCCc--EeehhhcCCCCChHH
Confidence            46667799887643     3789998753221 1133578888888865444 3566666443  58999987766321 


Q ss_pred             -------------hhhcccccccccccccCCHHHHHHHHHHHH-------------------------hhh-hhhcc-CC
Q 005680          419 -------------LFTSQRNYKNCSRARALRWLDRIHIAHEVC-------------------------LGL-SFLHS-TE  458 (683)
Q Consensus       419 -------------L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa-------------------------~aL-~yLH~-~~  458 (683)
                                   |..-+....+ ....+-.|.....+..++.                         ..+ .++.. ..
T Consensus       102 l~~~~~~~~ia~~L~~lH~~~~~-~~~~~~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~  180 (330)
T PLN02421        102 MRKPKVAAEIAKELRRLHQVEIP-GSKEPQLWNDIFKFYEKASTVKFEDPEKQKKYETISFEELRDEIVELKEITDSLKA  180 (330)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCC-CCCCCcHHHHHHHHHHHhhhcccCcHHHhhhhcccCHHHHHHHHHHHHHHhccCCC
Confidence                         1100000000 0011112333333322221                         111 11211 12


Q ss_pred             CCcEEeccCCCCcccccC-CCcEEEecCCCccccCCCcccccccHHHHHHHHh
Q 005680          459 PRPIVHGSLTPSSILLDR-NLVAKISGLGLNICDQLNVRSDIRAFGTLLLHLL  510 (683)
Q Consensus       459 ~~~IiHrDLKP~NILld~-~~~~KL~DFGla~~~~~t~ksDVwSlGviL~eLl  510 (683)
                      |.-++|.|+.|.|||++. ++.++++||..|..+.  +   .|-+|.++.|+.
T Consensus       181 ~~v~CHnDl~~~NiL~~~~~~~l~lID~EYag~nd--~---~fDIa~~f~E~~  228 (330)
T PLN02421        181 PVVFAHNDLLSGNLMLNEDEGKLYFIDFEYGSYSY--R---GYDIGNHFNEYA  228 (330)
T ss_pred             CeEEEECCCCcccEEEeCCCCcEEEEcccccCCCc--c---HHHHHHHHHHHc
Confidence            245899999999999974 5789999999885432  2   356677777753

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=95.85  E-value=0.064  Score=57.39  Aligned_cols=45  Identities=22%  Similarity=0.204  Sum_probs=35.2

Q ss_pred             CCcEEeccCCCCcccccCCCcEEEecCCCccccCCCcccccccHHHH
Q 005680          459 PRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVRSDIRAFGTL  505 (683)
Q Consensus       459 ~~~IiHrDLKP~NILld~~~~~KL~DFGla~~~~~t~ksDVwSlGvi  505 (683)
                      +.+++|+|+.++|||++.++.+.|+||..+..+  .+..|++.|-.=
T Consensus       195 ~~~lcHgD~~~~Nvl~~~~~~~~iIDfd~~~~d--~~~~DLa~~~~~  239 (309)
T TIGR02904       195 RTVLVHGKLSLSHFLYDETRGGYFINFEKASFA--SPLTDLAAFFRR  239 (309)
T ss_pred             ceeeeCCCCcHHhEEEcCCCCEEEEEhhhcccC--CcHHHHHHHHHH
Confidence            467999999999999999999999999988553  345566644433

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=95.79  E-value=0.037  Score=56.21  Aligned_cols=126  Identities=13%  Similarity=0.133  Sum_probs=84.2

Q ss_pred             eeEEEEEcCC-C-C-CHHHHHHHHHHHHhcCCCCccceecccccceeEEEeecCCCCchhhhhhcccccccccccccCCH
Q 005680          361 ASVAIKTLNN-G-L-SEEDFQAKVSFLTAVRHPHLVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRW  437 (683)
Q Consensus       361 ~~VAvK~l~~-~-~-~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~  437 (683)
                      .+..+|+++. + . ...-|..+.++++++.  .|+++..--.-.+-++.|+|...                   ..+..
T Consensus        86 G~L~lKKi~slp~~~~~~~y~nky~v~Armh--GilrL~NDn~~~yGvIlE~Cy~~-------------------~i~~~  144 (308)
T PF07387_consen   86 GPLFLKKIRSLPCCINDALYFNKYRVFARMH--GILRLKNDNNYKYGVILERCYKI-------------------KINFS  144 (308)
T ss_pred             chhhhhhccCCCcccchhhhhhhhhHHHHhh--heeEeecCCCceeEEEEeeccCc-------------------ccchh
Confidence            3455666652 1 1 3456788899988875  46666533111556889988521                   11111


Q ss_pred             HHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----------cCCCcccccccHHHHHH
Q 005680          438 LDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----------DQLNVRSDIRAFGTLLL  507 (683)
Q Consensus       438 ~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----------~~~t~ksDVwSlGviL~  507 (683)
                          .++.-=+.+|.-.|+.. .+.+|+|..|+||+-|..|.+||.|-+.--.          ...|+++.+-+|=.-++
T Consensus       145 ----N~i~agi~~L~~fH~~~-~~~lHGD~np~NiM~D~~G~lKlVDP~~Ll~~~V~~vN~~Y~~lT~~aE~~~fv~s~l  219 (308)
T PF07387_consen  145 ----NFITAGIKDLMDFHSEN-QHCLHGDCNPDNIMCDKFGYLKLVDPVCLLENQVNMVNIEYESLTQEAEVKVFVKSCL  219 (308)
T ss_pred             ----HHHHHhHHHHHHhhccC-CCeecCCCChhheeecCCCCEEecChhhhhhheeeEEeeeccccChHHHHHHHHHHHH
Confidence                12222256788899766 7899999999999999999999999885422          45678888877766666


Q ss_pred             HHhhC
Q 005680          508 HLLTG  512 (683)
Q Consensus       508 eLltG  512 (683)
                      ++...
T Consensus       220 ~~v~~  224 (308)
T PF07387_consen  220 KLVEK  224 (308)
T ss_pred             HHHHH
Confidence            66653

The function of this family is unknown.

>PRK11768 serine/threonine protein kinase; Provisional

Probab=95.70  E-value=0.2  Score=54.08  Aligned_cols=93  Identities=16%  Similarity=0.119  Sum_probs=55.8

Q ss_pred             cccccCHHHHHHhhcCccc----cccccccCCceEEEEEEE-CCeeEEEEEcCCC-CCHHHHHHHHHHHHhcCCC--Ccc
Q 005680          322 AFREYAAEDIRLATEDFSE----RFRLKCAGDWTNVYRGRL-NHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHP--HLV  393 (683)
Q Consensus       322 ~~~~~s~~ei~~at~~F~~----~~~liG~G~fG~Vykg~~-~g~~VAvK~l~~~-~~~~~~~~Ev~iL~~l~Hp--nIV  393 (683)
                      ++..++.+.+..+...+.-    ....++ +.-..||+... +|..+++|+.+.. .+...+..|+..+..|...  .++
T Consensus         7 ~~~~l~p~~~~~a~~~~g~~~~~~~~~l~-s~eN~vy~v~~~~~~~~vlKv~r~~~~~~~~i~~E~~~l~~L~~~gipv~   85 (325)
T PRK11768          7 PFQTLTPDLILDALESLGLRVDGRLLALN-SYENRVYQFGDEDGRRVVAKFYRPERWSDAQILEEHAFALELAEAEIPVV   85 (325)
T ss_pred             CCCCCChHHHHHHHHHcCCCCccceEeec-cccceEEEEecCCCCEEEEEEcCcccCCHHHHHHHHHHHHHHHHCCCCCC
Confidence            4556666666666554421    113332 33467999887 5778999988643 3567788888888777321  122


Q ss_pred             cee---c----ccccceeEEEeecCCCCc
Q 005680          394 AVM---G----CCSELKCIVFEYMPNGNL  415 (683)
Q Consensus       394 ~l~---g----~~~~~~~LV~Ey~~ggsL  415 (683)
                      ...   |    .+....+.|+++++|..+
T Consensus        86 ~p~~~~G~~~~~~~g~~~~l~~~~~G~~~  114 (325)
T PRK11768         86 APLAFNGQTLHEHQGFRFALFPRRGGRAP  114 (325)
T ss_pred             CCccCCCCEEEEECCEEEEEEeeeCCCCC
Confidence            212   1    112246789999987654

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=95.62  E-value=0.025  Score=56.92  Aligned_cols=47  Identities=13%  Similarity=0.178  Sum_probs=30.7

Q ss_pred             CcEEeccCCCCcccc-cCCCcEEEecCCCccccCCCcccccccHHHHHHHHhh
Q 005680          460 RPIVHGSLTPSSILL-DRNLVAKISGLGLNICDQLNVRSDIRAFGTLLLHLLT  511 (683)
Q Consensus       460 ~~IiHrDLKP~NILl-d~~~~~KL~DFGla~~~~~t~ksDVwSlGviL~eLlt  511 (683)
                      ..++|.|+.|.|||+ +.++.++|+||..|..+..     .|-+|.++.+...
T Consensus       143 ~v~cHnDl~~~Nil~~~~~~~~~lIDfEya~~n~~-----~fDia~~f~e~~~  190 (211)
T PF01633_consen  143 LVFCHNDLNPGNILINNKDGEVKLIDFEYAGYNDR-----AFDIANFFCEWNF  190 (211)
T ss_dssp             EEEE-S--SGGGEEETSSSSCEEE--GTT-EEEEH-----HHHHHHHHHHTTE
T ss_pred             ceEeeccCccccEEeccCCCeEEEecHHHHhhccc-----hhhHHHHHHHHcC
Confidence            468999999999999 8889999999998855321     4566666666544

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	683
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		2e-15
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		2e-15
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		6e-14
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		6e-14
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		7e-14
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		8e-13
1t1h_A	78	Nmr Solution Structure Of The U Box Domain From Atp		2e-11
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		4e-11
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		6e-11
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		9e-11
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		1e-10
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		1e-10
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		1e-10
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		2e-10
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		8e-10
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		1e-09
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		1e-09
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		1e-09
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		1e-09
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		2e-09
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		2e-09
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		2e-09
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		2e-09
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		2e-09
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		3e-09
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		3e-09
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		3e-09
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		3e-09
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		4e-09
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		5e-09
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		5e-09
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		6e-09
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		6e-09
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		6e-09
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		7e-09
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		7e-09
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		7e-09
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		8e-09
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		9e-09
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		9e-09
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		9e-09
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		9e-09
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		1e-08
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		1e-08
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		1e-08
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		1e-08
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		1e-08
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		1e-08
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		1e-08
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		1e-08
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		1e-08
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		2e-08
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		2e-08
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		2e-08
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		2e-08
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		2e-08
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		2e-08
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		2e-08
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-08
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		2e-08
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		2e-08
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		2e-08
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		2e-08
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		2e-08
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		2e-08
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		3e-08
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		3e-08
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		3e-08
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		4e-08
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		6e-08
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		6e-08
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		7e-08
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		7e-08
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		7e-08
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		8e-08
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		1e-07
1luf_A	343	Crystal Structure Of The Musk Tyrosine Kinase: Insi		1e-07
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		1e-07
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		1e-07
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		1e-07
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		2e-07
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		2e-07
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		2e-07
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		2e-07
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-07
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		2e-07
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		2e-07
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-07
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		2e-07
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		2e-07
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		2e-07
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		2e-07
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		2e-07
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		2e-07
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		2e-07
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		2e-07
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		2e-07
2pl0_A	289	Lck Bound To Imatinib Length = 289		2e-07
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		2e-07
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		2e-07
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		3e-07
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		3e-07
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		3e-07
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		3e-07
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		7e-07
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		8e-07
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		9e-07
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		1e-06
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		1e-06
2ivt_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		1e-06
2ivs_A	314	Crystal Structure Of Non-Phosphorylated Ret Tyrosin		1e-06
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		1e-06
2ivv_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		2e-06
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		2e-06
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		2e-06
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-06
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		3e-06
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		4e-06
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		5e-06
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		6e-06
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		6e-06
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		6e-06
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		7e-06
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		8e-06
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		9e-06
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		9e-06
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		9e-06
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		1e-05
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		1e-05
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		1e-05
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		1e-05
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		1e-05
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		1e-05
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		1e-05
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		1e-05
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		1e-05
1fvr_A	327	Tie2 Kinase Domain Length = 327		1e-05
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		1e-05
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		1e-05
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		1e-05
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		1e-05
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		1e-05
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		1e-05
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		1e-05
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		1e-05
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		1e-05
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		1e-05
3kmw_A	271	Crystal Structure Of The IlkALPHA-Parvin Core Compl		2e-05
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		2e-05
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		2e-05
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		2e-05
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		2e-05
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		2e-05
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		2e-05
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		2e-05
1u59_A	287	Crystal Structure Of The Zap-70 Kinase Domain In Co		2e-05
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		2e-05
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		3e-05
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		3e-05
4gt4_A	308	Structure Of Unliganded, Inactive Ror2 Kinase Domai		3e-05
3zzw_A	289	Crystal Structure Of The Kinase Domain Of Ror2 Leng		3e-05
3a4o_X	286	Lyn Kinase Domain Length = 286		5e-05
2ozo_A	613	Autoinhibited Intact Human Zap-70 Length = 613		5e-05
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		1e-04
3dae_A	283	Crystal Structure Of Phosphorylated Snf1 Kinase Dom		2e-04
2fh9_A	274	Structure And Dimerization Of The Kinase Domain Fro		2e-04
3hyh_A	275	Crystal Structure Of The Protein Kinase Domain Of Y		2e-04
3mn3_A	271	An Inhibited Conformation For The Protein Kinase Do		3e-04
1yvj_A	290	Crystal Structure Of The Jak3 Kinase Domain In Comp		3e-04
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		3e-04
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		3e-04
3h4j_B	336	Crystal Structure Of Pombe Ampk Kdaid Fragment Leng		3e-04
4fvr_A	289	Crystal Structure Of The Jak2 Pseudokinase Domain M		4e-04
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		4e-04
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		5e-04
4fvp_A	289	Crystal Structure Of The Jak2 Pseudokinase Domain (		5e-04
3f69_A	311	Crystal Structure Of The Mycobacterium Tuberculosis		8e-04

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 138/303 (45%), Gaps = 58/303 (19%)
Query: 302 EFCKEKDAIGMVIRSSELSCAFREYAAE--DIRLATEDFSERFRLKCAGDWTNVYRGRL- 358
           ++ K  ++I   + SS L   F  Y     D+  AT +F  +F L   G +  VY+G L 
Sbjct: 4   KYSKATNSINDALSSSYL-VPFESYRVPLVDLEEATNNFDHKF-LIGHGVFGKVYKGVLR 61
Query: 359 NHASVAIK--TLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGN 414
           + A VA+K  T  +    E+F+ ++  L+  RHPHLV+++G C E     ++++YM NGN
Sbjct: 62  DGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGN 121
Query: 415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL 474
           L+  L+ S           ++ W  R+ I      GL +LH+   R I+H  +   +ILL
Sbjct: 122 LKRHLYGSDLP------TMSMSWEQRLEICIGAARGLHYLHT---RAIIHRDVKSINILL 172
Query: 475 DRNLVAKISGLGLN---------------------------ICDQLNVRSDIRAFGTLLL 507
           D N V KI+  G++                           I  +L  +SD+ +FG +L 
Sbjct: 173 DENFVPKITDFGISKKGTELDQTHLXXVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLF 232
Query: 508 HLLTGRN---------WAGLVEKAM-ALDQTTLMQVLDGNAG--IWPLDLAEELAGIALK 555
            +L  R+            L E A+ + +   L Q++D N    I P  L  +    A+K
Sbjct: 233 EVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESL-RKFGDTAVK 291
Query: 556 CLS 558
           CL+
Sbjct: 292 CLA 294

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 138/303 (45%), Gaps = 58/303 (19%)
Query: 302 EFCKEKDAIGMVIRSSELSCAFREYAAE--DIRLATEDFSERFRLKCAGDWTNVYRGRL- 358
           ++ K  ++I   + SS L   F  Y     D+  AT +F  +F L   G +  VY+G L 
Sbjct: 4   KYSKATNSINDALSSSYL-VPFESYRVPLVDLEEATNNFDHKF-LIGHGVFGKVYKGVLR 61
Query: 359 NHASVAIK--TLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGN 414
           + A VA+K  T  +    E+F+ ++  L+  RHPHLV+++G C E     ++++YM NGN
Sbjct: 62  DGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGN 121
Query: 415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL 474
           L+  L+ S           ++ W  R+ I      GL +LH+   R I+H  +   +ILL
Sbjct: 122 LKRHLYGSDLP------TMSMSWEQRLEICIGAARGLHYLHT---RAIIHRDVKSINILL 172
Query: 475 DRNLVAKISGLGLN---------------------------ICDQLNVRSDIRAFGTLLL 507
           D N V KI+  G++                           I  +L  +SD+ +FG +L 
Sbjct: 173 DENFVPKITDFGISKKGTELGQTHLXXVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLF 232
Query: 508 HLLTGRN---------WAGLVEKAM-ALDQTTLMQVLDGNAG--IWPLDLAEELAGIALK 555
            +L  R+            L E A+ + +   L Q++D N    I P  L  +    A+K
Sbjct: 233 EVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESL-RKFGDTAVK 291
Query: 556 CLS 558
           CL+
Sbjct: 292 CLA 294

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 53/231 (22%)
Query: 323 FREYAAEDIRLATEDFSERFRLKCAGD------WTNVYRGRLNHASVAIKTLNNGLS--- 373
           F  ++  +++  T +F ER  +   G+      +  VY+G +N+ +VA+K L   +    
Sbjct: 12  FHSFSFYELKNVTNNFDER-PISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITT 70
Query: 374 ---EEDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKN 428
              ++ F  ++  +   +H +LV ++G  S+    C+V+ YMPNG+L D+L        +
Sbjct: 71  EELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRL--------S 122
Query: 429 C-SRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
           C      L W  R  IA     G++FLH       +H  +  ++ILLD    AKIS  GL
Sbjct: 123 CLDGTPPLSWHMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGL 179
Query: 488 --------------------------NICDQLNVRSDIRAFGTLLLHLLTG 512
                                      +  ++  +SDI +FG +LL ++TG
Sbjct: 180 ARASEKFAQTVMXSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITG 230

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 53/231 (22%)
Query: 323 FREYAAEDIRLATEDFSERFRLKCAGD------WTNVYRGRLNHASVAIKTLNNGLS--- 373
           F  ++  +++  T +F ER  +   G+      +  VY+G +N+ +VA+K L   +    
Sbjct: 12  FHSFSFYELKNVTNNFDER-PISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITT 70
Query: 374 ---EEDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKN 428
              ++ F  ++  +   +H +LV ++G  S+    C+V+ YMPNG+L D+L        +
Sbjct: 71  EELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRL--------S 122
Query: 429 C-SRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
           C      L W  R  IA     G++FLH       +H  +  ++ILLD    AKIS  GL
Sbjct: 123 CLDGTPPLSWHMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGL 179
Query: 488 --------------------------NICDQLNVRSDIRAFGTLLLHLLTG 512
                                      +  ++  +SDI +FG +LL ++TG
Sbjct: 180 ARASEKFAQTVMXXRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITG 230

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 53/231 (22%)
Query: 323 FREYAAEDIRLATEDFSERFRLKCAGD------WTNVYRGRLNHASVAIKTLNNGLS--- 373
           F  ++  +++  T +F ER  +   G+      +  VY+G +N+ +VA+K L   +    
Sbjct: 6   FHSFSFYELKNVTNNFDER-PISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITT 64
Query: 374 ---EEDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKN 428
              ++ F  ++  +   +H +LV ++G  S+    C+V+ YMPNG+L D+L        +
Sbjct: 65  EELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRL--------S 116
Query: 429 C-SRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
           C      L W  R  IA     G++FLH       +H  +  ++ILLD    AKIS  GL
Sbjct: 117 CLDGTPPLSWHMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGL 173
Query: 488 --------------------------NICDQLNVRSDIRAFGTLLLHLLTG 512
                                      +  ++  +SDI +FG +LL ++TG
Sbjct: 174 ARASEKFAQXVMXXRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITG 224

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 100/230 (43%), Gaps = 51/230 (22%)
Query: 323 FREYAAEDIRLATEDFSER-----FRLKCAGDWTNVYRGRLNHASVAIKTLNNGLS---- 373
           F  ++  +++  T +F ER           G +  VY+G +N+ +VA+K L   +     
Sbjct: 3   FHSFSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTE 62
Query: 374 --EEDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNC 429
             ++ F  ++      +H +LV ++G  S+    C+V+ Y PNG+L D+L        +C
Sbjct: 63  ELKQQFDQEIKVXAKCQHENLVELLGFSSDGDDLCLVYVYXPNGSLLDRL--------SC 114
Query: 430 -SRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL- 487
                 L W  R  IA     G++FLH       +H  +  ++ILLD    AKIS  GL 
Sbjct: 115 LDGTPPLSWHXRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLA 171
Query: 488 -------------------------NICDQLNVRSDIRAFGTLLLHLLTG 512
                                     +  ++  +SDI +FG +LL ++TG
Sbjct: 172 RASEKFAQXVXXSRIVGTTAYXAPEALRGEITPKSDIYSFGVVLLEIITG 221

>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 605 SNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPN 664
           S + P  F CPI  E+MK P + + G +YE  ++++WL  GH T P +   L H  LTPN
Sbjct: 2   SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPN 61
Query: 665 HTLRSLIQEW 674
           + L+SLI  W
Sbjct: 62  YVLKSLIALW 71

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 115/266 (43%), Gaps = 77/266 (28%)
Query: 347 AGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAK--------VSFLTAVRHPHLVAVMGC 398
           AG +  V+R   + + VA+K L     E+DF A+        V+ +  +RHP++V  MG 
Sbjct: 47  AGSFGTVHRAEWHGSDVAVKIL----MEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGA 102
Query: 399 CSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLD---RIHIAHEVCLGLSF 453
            ++     IV EY+  G+L          Y+   ++ A   LD   R+ +A++V  G+++
Sbjct: 103 VTQPPNLSIVTEYLSRGSL----------YRLLHKSGAREQLDERRRLSMAYDVAKGMNY 152
Query: 454 LHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----------------------- 490
           LH+  P PIVH +L   ++L+D+    K+   GL+                         
Sbjct: 153 LHNRNP-PIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVL 211
Query: 491 --DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE 548
             +  N +SD+ +FG +L  L T                   +Q   GN     L+ A+ 
Sbjct: 212 RDEPSNEKSDVYSFGVILWELAT-------------------LQQPWGN-----LNPAQV 247
Query: 549 LAGIALKCLSADQDANRDLRIAGVMK 574
           +A +  KC   +   N + ++A +++
Sbjct: 248 VAAVGFKCKRLEIPRNLNPQVAAIIE 273

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 114/266 (42%), Gaps = 77/266 (28%)
Query: 347 AGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAK--------VSFLTAVRHPHLVAVMGC 398
           AG +  V+R   + + VA+K L     E+DF A+        V+ +  +RHP++V  MG 
Sbjct: 47  AGSFGTVHRAEWHGSDVAVKIL----MEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGA 102
Query: 399 CSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLD---RIHIAHEVCLGLSF 453
            ++     IV EY+  G+L          Y+   ++ A   LD   R+ +A++V  G+++
Sbjct: 103 VTQPPNLSIVTEYLSRGSL----------YRLLHKSGAREQLDERRRLSMAYDVAKGMNY 152
Query: 454 LHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----------------------- 490
           LH+  P PIVH  L   ++L+D+    K+   GL+                         
Sbjct: 153 LHNRNP-PIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKASXFLXSKXAAGTPEWMAPEVL 211
Query: 491 --DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE 548
             +  N +SD+ +FG +L  L T                   +Q   GN     L+ A+ 
Sbjct: 212 RDEPSNEKSDVYSFGVILWELAT-------------------LQQPWGN-----LNPAQV 247
Query: 549 LAGIALKCLSADQDANRDLRIAGVMK 574
           +A +  KC   +   N + ++A +++
Sbjct: 248 VAAVGFKCKRLEIPRNLNPQVAAIIE 273

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 22/162 (13%)
Query: 330 DIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSFLTAVR 388
           ++    E  S +F L   G W       LN   VAIKT+  G +SEEDF  +   +  + 
Sbjct: 8   ELTFVQEIGSGQFGLVHLGYW-------LNKDKVAIKTIREGAMSEEDFIEEAEVMMKLS 60
Query: 389 HPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHE 446
           HP LV + G C E    C+VFE+M +G L D L    R  +    A  L     + +  +
Sbjct: 61  HPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYL----RTQRGLFAAETL-----LGMCLD 111
Query: 447 VCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
           VC G+++L   E   ++H  L   + L+  N V K+S  G+ 
Sbjct: 112 VCEGMAYL---EEASVIHRDLAARNCLVGENQVIKVSDFGMT 150

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 22/162 (13%)
Query: 330 DIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSFLTAVR 388
           ++    E  S +F L   G W       LN   VAIKT+  G +SEEDF  +   +  + 
Sbjct: 8   ELTFVQEIGSGQFGLVHLGYW-------LNKDKVAIKTIREGAMSEEDFIEEAEVMMKLS 60
Query: 389 HPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHE 446
           HP LV + G C E    C+VFE+M +G L D L    R  +    A  L     + +  +
Sbjct: 61  HPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYL----RTQRGLFAAETL-----LGMCLD 111
Query: 447 VCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
           VC G+++L   E   ++H  L   + L+  N V K+S  G+ 
Sbjct: 112 VCEGMAYL---EEACVIHRDLAARNCLVGENQVIKVSDFGMT 150

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 22/162 (13%)
Query: 330 DIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSFLTAVR 388
           ++    E  S +F L   G W       LN   VAIKT+  G +SEEDF  +   +  + 
Sbjct: 11  ELTFVQEIGSGQFGLVHLGYW-------LNKDKVAIKTIREGAMSEEDFIEEAEVMMKLS 63
Query: 389 HPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHE 446
           HP LV + G C E    C+VFE+M +G L D L    R  +    A  L     + +  +
Sbjct: 64  HPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYL----RTQRGLFAAETL-----LGMCLD 114
Query: 447 VCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
           VC G+++L   E   ++H  L   + L+  N V K+S  G+ 
Sbjct: 115 VCEGMAYL---EEACVIHRDLAARNCLVGENQVIKVSDFGMT 153

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 22/162 (13%)
Query: 330 DIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSFLTAVR 388
           ++    E  S +F L   G W       LN   VAIKT+  G +SEEDF  +   +  + 
Sbjct: 6   ELTFVQEIGSGQFGLVHLGYW-------LNKDKVAIKTIREGAMSEEDFIEEAEVMMKLS 58
Query: 389 HPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHE 446
           HP LV + G C E    C+VFE+M +G L D L    R  +    A  L     + +  +
Sbjct: 59  HPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYL----RTQRGLFAAETL-----LGMCLD 109
Query: 447 VCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
           VC G+++L   E   ++H  L   + L+  N V K+S  G+ 
Sbjct: 110 VCEGMAYL---EEACVIHRDLAARNCLVGENQVIKVSDFGMT 148

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 307 KDAIGMVIRSSELSCAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIK 366
           + ++ MVI  SEL+               E  S +F L   G W       LN   VAIK
Sbjct: 17  RGSLHMVIDPSELT------------FVQEIGSGQFGLVHLGYW-------LNKDKVAIK 57
Query: 367 TLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQ 423
           T+  G +SE+DF  +   +  + HP LV + G C E    C+VFE+M +G L D L    
Sbjct: 58  TIKEGSMSEDDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYL---- 113
Query: 424 RNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKIS 483
           R  +    A  L     + +  +VC G+++L   E   ++H  L   + L+  N V K+S
Sbjct: 114 RTQRGLFAAETL-----LGMCLDVCEGMAYL---EEACVIHRDLAARNCLVGENQVIKVS 165
Query: 484 GLGLN 488
             G+ 
Sbjct: 166 DFGMT 170

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 42/196 (21%)
Query: 347 AGDWTNVYRGRLNHAS--VAIKTLNNGLSE-EDFQAKVSFLTAVRHPHLVAVMGCCS--E 401
            G +  VY G     S  VA+KTL     E E+F  + + +  ++HP+LV ++G C+   
Sbjct: 42  GGQYGEVYVGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTLEP 101
Query: 402 LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              IV EYMP GNL D L       + C+R      +  +++A ++   + +L   E + 
Sbjct: 102 PFYIVTEYMPYGNLLDYL-------RECNREEVTA-VVLLYMATQISSAMEYL---EKKN 150
Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNV 495
            +H  L   + L+  N V K++  GL+                            +  ++
Sbjct: 151 FIHRDLAARNCLVGENHVVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSI 210
Query: 496 RSDIRAFGTLLLHLLT 511
           +SD+ AFG LL  + T
Sbjct: 211 KSDVWAFGVLLWEIAT 226

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 122/285 (42%), Gaps = 53/285 (18%)
Query: 323 FREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHAS-VAIKTLNNGL---SEEDFQ 378
            + ++  ++++A+++FS +  +   G +  VY+GRL   + VA+K L        E  FQ
Sbjct: 25  LKRFSLRELQVASDNFSNK-NILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQ 83
Query: 379 AKVSFLTAVRHPHLVAVMGCC--SELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARA-- 434
            +V  ++   H +L+ + G C     + +V+ YM NG++            +C R R   
Sbjct: 84  TEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSV-----------ASCLRERPES 132
Query: 435 ---LRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL-NIC 490
              L W  R  IA     GL++LH      I+H  +  ++ILLD    A +   GL  + 
Sbjct: 133 QPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLM 192
Query: 491 DQLNV-------------------------RSDIRAFGTLLLHLLTGRNWAGLVEKAMAL 525
           D  +                          ++D+  +G +LL L+TG+    L    +A 
Sbjct: 193 DYKDXHVXXAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLAR--LAN 250
Query: 526 DQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIA 570
           D   ++  LD   G+      E L  + L+    D++  + +++A
Sbjct: 251 DDDVML--LDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVA 293

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 98/246 (39%), Gaps = 47/246 (19%)
Query: 346 CAGD-WTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           C G+ W   + G      VAIKTL  G +S E F  +   +  +RH  LV +    SE  
Sbjct: 30  CFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP 86
Query: 404 C-IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             IV EYM  G+L D L      Y        LR    + +A ++  G++++        
Sbjct: 87  IYIVIEYMSKGSLLDFLKGEMGKY--------LRLPQLVDMAAQIASGMAYVERMN---Y 135
Query: 463 VHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNVR 496
           VH  L  ++IL+  NLV K++  GL                           +  +  ++
Sbjct: 136 VHRDLRAANILVGENLVCKVADFGLARLIEDNEXTARQGAKFPIKWTAPEAALYGRFTIK 195
Query: 497 SDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKC 556
           SD+ +FG LL  L T     G V     +++  L QV  G     P +  E L  +  +C
Sbjct: 196 SDVWSFGILLTELTT----KGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQC 251
Query: 557 LSADQD 562
              D +
Sbjct: 252 WRKDPE 257

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 98/246 (39%), Gaps = 47/246 (19%)
Query: 346 CAGD-WTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           C G+ W   + G      VAIKTL  G +S E F  +   +  +RH  LV +    SE  
Sbjct: 30  CFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKIRHEKLVQLYAVVSEEP 86
Query: 404 C-IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             IV EYM  G+L D L      Y        LR    + +A ++  G++++        
Sbjct: 87  IYIVTEYMSKGSLLDFLKGEMGKY--------LRLPQLVDMAAQIASGMAYVERMN---Y 135
Query: 463 VHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNVR 496
           VH  L  ++IL+  NLV K++  GL                           +  +  ++
Sbjct: 136 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIK 195
Query: 497 SDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKC 556
           SD+ +FG LL  L T     G V     +++  L QV  G     P +  E L  +  +C
Sbjct: 196 SDVWSFGILLTELTT----KGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQC 251
Query: 557 LSADQD 562
              D +
Sbjct: 252 WRKDPE 257

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 98/246 (39%), Gaps = 47/246 (19%)
Query: 346 CAGD-WTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           C G+ W   + G      VAIKTL  G +S E F  +   +  +RH  LV +    SE  
Sbjct: 30  CFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP 86
Query: 404 C-IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             IV EYM  G+L D L      Y        LR    + +A ++  G++++        
Sbjct: 87  IYIVIEYMSKGSLLDFLKGEMGKY--------LRLPQLVDMAAQIASGMAYVERMN---Y 135
Query: 463 VHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNVR 496
           VH  L  ++IL+  NLV K++  GL                           +  +  ++
Sbjct: 136 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIK 195
Query: 497 SDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKC 556
           SD+ +FG LL  L T     G V     +++  L QV  G     P +  E L  +  +C
Sbjct: 196 SDVWSFGILLTELTT----KGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQC 251
Query: 557 LSADQD 562
              D +
Sbjct: 252 WRKDPE 257

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 22/162 (13%)
Query: 330 DIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSFLTAVR 388
           ++    E  S +F L   G W       LN   VAIKT+  G +SEEDF  +   +  + 
Sbjct: 9   ELTFVQEIGSGQFGLVHLGYW-------LNKDKVAIKTIREGAMSEEDFIEEAEVMMKLS 61
Query: 389 HPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHE 446
           HP LV + G C E    C+V E+M +G L D L    R  +    A  L     + +  +
Sbjct: 62  HPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYL----RTQRGLFAAETL-----LGMCLD 112
Query: 447 VCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
           VC G+++L   E   ++H  L   + L+  N V K+S  G+ 
Sbjct: 113 VCEGMAYL---EEACVIHRDLAARNCLVGENQVIKVSDFGMT 151

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 98/246 (39%), Gaps = 47/246 (19%)
Query: 346 CAGD-WTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           C G+ W   + G      VAIKTL  G +S E F  +   +  +RH  LV +    SE  
Sbjct: 197 CFGEVWMGTWNGT---TRVAIKTLKPGNMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP 253
Query: 404 C-IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             IV EYM  G+L D L      Y        LR    + +A ++  G++++        
Sbjct: 254 IYIVTEYMSKGSLLDFLKGEMGKY--------LRLPQLVDMAAQIASGMAYVERMN---Y 302
Query: 463 VHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNVR 496
           VH  L  ++IL+  NLV K++  GL                           +  +  ++
Sbjct: 303 VHRDLRAANILVGENLVCKVADFGLGRLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIK 362
Query: 497 SDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKC 556
           SD+ +FG LL  L T     G V     +++  L QV  G     P +  E L  +  +C
Sbjct: 363 SDVWSFGILLTELTT----KGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQC 418
Query: 557 LSADQD 562
              D +
Sbjct: 419 WRKDPE 424

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 22/167 (13%)
Query: 325 EYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSF 383
           E   E+I L  E  S +F +   G W   Y        VA+K +  G +SE++F  +   
Sbjct: 4   ELKREEITLLKELGSGQFGVVKLGKWKGQY-------DVAVKMIKEGSMSEDEFFQEAQT 56
Query: 384 LTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRI 441
           +  + HP LV   G CS+     IV EY+ NG L + L          S  + L     +
Sbjct: 57  MMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYL---------RSHGKGLEPSQLL 107
Query: 442 HIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
            + ++VC G++FL S +    +H  L   + L+DR+L  K+S  G+ 
Sbjct: 108 EMCYDVCEGMAFLESHQ---FIHRDLAARNCLVDRDLCVKVSDFGMT 151

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 98/246 (39%), Gaps = 47/246 (19%)
Query: 346 CAGD-WTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           C G+ W   + G      VAIKTL  G +S E F  +   +  +RH  LV +    SE  
Sbjct: 30  CFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP 86
Query: 404 C-IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             IV EYM  G+L D L      Y        LR    + +A ++  G++++        
Sbjct: 87  IYIVTEYMSKGSLLDFLKGEMGKY--------LRLPQLVDMAAQIASGMAYVERMN---Y 135
Query: 463 VHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNVR 496
           VH  L  ++IL+  NLV K++  GL                           +  +  ++
Sbjct: 136 VHRDLAAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIK 195
Query: 497 SDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKC 556
           SD+ +FG LL  L T     G V     +++  L QV  G     P +  E L  +  +C
Sbjct: 196 SDVWSFGILLTELTT----KGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQC 251
Query: 557 LSADQD 562
              D +
Sbjct: 252 WRKDPE 257

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 98/246 (39%), Gaps = 47/246 (19%)
Query: 346 CAGD-WTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           C G+ W   + G      VAIKTL  G +S E F  +   +  +RH  LV +    SE  
Sbjct: 21  CFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP 77
Query: 404 C-IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             IV EYM  G+L D L      Y        LR    + +A ++  G++++        
Sbjct: 78  IYIVTEYMSKGSLLDFLKGEMGKY--------LRLPQLVDMAAQIASGMAYVERMN---Y 126
Query: 463 VHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNVR 496
           VH  L  ++IL+  NLV K++  GL                           +  +  ++
Sbjct: 127 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIK 186
Query: 497 SDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKC 556
           SD+ +FG LL  L T     G V     +++  L QV  G     P +  E L  +  +C
Sbjct: 187 SDVWSFGILLTELTT----KGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQC 242
Query: 557 LSADQD 562
              D +
Sbjct: 243 WRKDPE 248

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 98/246 (39%), Gaps = 47/246 (19%)
Query: 346 CAGD-WTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           C G+ W   + G      VAIKTL  G +S E F  +   +  +RH  LV +    SE  
Sbjct: 19  CFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP 75
Query: 404 C-IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             IV EYM  G+L D L      Y        LR    + +A ++  G++++        
Sbjct: 76  IYIVTEYMSKGSLLDFLKGEMGKY--------LRLPQLVDMAAQIASGMAYVERMN---Y 124
Query: 463 VHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNVR 496
           VH  L  ++IL+  NLV K++  GL                           +  +  ++
Sbjct: 125 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIK 184
Query: 497 SDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKC 556
           SD+ +FG LL  L T     G V     +++  L QV  G     P +  E L  +  +C
Sbjct: 185 SDVWSFGILLTELTT----KGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQC 240
Query: 557 LSADQD 562
              D +
Sbjct: 241 WRKDPE 246

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 98/246 (39%), Gaps = 47/246 (19%)
Query: 346 CAGD-WTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           C G+ W   + G      VAIKTL  G +S E F  +   +  +RH  LV +    SE  
Sbjct: 30  CFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP 86
Query: 404 C-IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             IV EYM  G+L D L      Y        LR    + +A ++  G++++        
Sbjct: 87  IYIVTEYMSKGSLLDFLKGEMGKY--------LRLPQLVDMAAQIASGMAYVERMN---Y 135
Query: 463 VHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNVR 496
           VH  L  ++IL+  NLV K++  GL                           +  +  ++
Sbjct: 136 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIK 195
Query: 497 SDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKC 556
           SD+ +FG LL  L T     G V     +++  L QV  G     P +  E L  +  +C
Sbjct: 196 SDVWSFGILLTELTT----KGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQC 251
Query: 557 LSADQD 562
              D +
Sbjct: 252 WRKDPE 257

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 81/157 (51%), Gaps = 26/157 (16%)
Query: 348 GDWTNVYRGRL--NHASVAIKTLNNGLSE---------EDFQAKVSFLTAVRHPHLVAVM 396
           G +  V++GRL  + + VAIK+L  G SE         ++FQ +V  ++ + HP++V + 
Sbjct: 30  GGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLY 89
Query: 397 GCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
           G       +V E++P G+L  +L           +A  ++W  ++ +  ++ LG+ ++ +
Sbjct: 90  GLMHNPPRMVMEFVPCGDLYHRLL---------DKAHPIKWSVKLRLMLDIALGIEYMQN 140
Query: 457 TEPRPIVHGSLTPSSIL---LDRN--LVAKISGLGLN 488
             P PIVH  L   +I    LD N  + AK++  GL+
Sbjct: 141 QNP-PIVHRDLRSPNIFLQSLDENAPVCAKVADFGLS 176

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 98/246 (39%), Gaps = 47/246 (19%)
Query: 346 CAGD-WTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           C G+ W   + G      VAIKTL  G +S E F  +   +  +RH  LV +    SE  
Sbjct: 30  CFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP 86
Query: 404 C-IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             IV EYM  G+L D L      Y        LR    + +A ++  G++++        
Sbjct: 87  IYIVCEYMSKGSLLDFLKGEMGKY--------LRLPQLVDMAAQIASGMAYVERMN---Y 135
Query: 463 VHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNVR 496
           VH  L  ++IL+  NLV K++  GL                           +  +  ++
Sbjct: 136 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIK 195
Query: 497 SDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKC 556
           SD+ +FG LL  L T     G V     +++  L QV  G     P +  E L  +  +C
Sbjct: 196 SDVWSFGILLTELTT----KGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQC 251
Query: 557 LSADQD 562
              D +
Sbjct: 252 WRKDPE 257

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 97/246 (39%), Gaps = 47/246 (19%)
Query: 346 CAGD-WTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           C G+ W   + G      VAIKTL  G +S E F  +   +  +RH  LV +    SE  
Sbjct: 30  CFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP 86
Query: 404 C-IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             IV EYM  G L D L      Y        LR    + +A ++  G++++        
Sbjct: 87  IYIVMEYMSKGCLLDFLKGEMGKY--------LRLPQLVDMAAQIASGMAYVERMN---Y 135
Query: 463 VHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNVR 496
           VH  L  ++IL+  NLV K++  GL                           +  +  ++
Sbjct: 136 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIK 195
Query: 497 SDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKC 556
           SD+ +FG LL  L T     G V     +++  L QV  G     P +  E L  +  +C
Sbjct: 196 SDVWSFGILLTELTT----KGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQC 251
Query: 557 LSADQD 562
              D +
Sbjct: 252 WRKDPE 257

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 96/240 (40%), Gaps = 47/240 (19%)
Query: 346 CAGD-WTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           C G+ W   + G      VAIKTL  G +S E F  +   +  +RH  LV +    SE  
Sbjct: 279 CFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP 335
Query: 404 C-IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             IV EYM  G+L D L      Y        LR    + +A ++  G++++        
Sbjct: 336 IYIVTEYMSKGSLLDFLKGETGKY--------LRLPQLVDMAAQIASGMAYVERMN---Y 384
Query: 463 VHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNVR 496
           VH  L  ++IL+  NLV K++  GL                           +  +  ++
Sbjct: 385 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIK 444
Query: 497 SDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKC 556
           SD+ +FG LL  L T     G V     +++  L QV  G     P +  E L  +  +C
Sbjct: 445 SDVWSFGILLTELTT----KGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQC 500

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 100/244 (40%), Gaps = 44/244 (18%)
Query: 348 GDWTNVYRGRLN-HASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELKC- 404
           G +  V+ G  N +  VAIKTL  G +S E F  +   +  ++H  LV +    SE    
Sbjct: 20  GQFGEVWMGTWNGNTKVAIKTLKPGTMSPESFLEEAQIMKKLKHDKLVQLYAVVSEEPIY 79
Query: 405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVH 464
           IV EYM  G+L D L   +         RAL+  + + +A +V  G++++        +H
Sbjct: 80  IVTEYMNKGSLLDFLKDGE--------GRALKLPNLVDMAAQVAAGMAYIERMN---YIH 128
Query: 465 GSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNVRSD 498
             L  ++IL+   L+ KI+  GL                           +  +  ++SD
Sbjct: 129 RDLRSANILVGNGLICKIADFGLARLIEDNEXTARQGAKFPIKWTAPEAALYGRFTIKSD 188
Query: 499 IRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLS 558
           + +FG LL  L+T     G V      ++  L QV  G     P D    L  + + C  
Sbjct: 189 VWSFGILLTELVT----KGRVPYPGMNNREVLEQVERGYRMPCPQDCPISLHELMIHCWK 244
Query: 559 ADQD 562
            D +
Sbjct: 245 KDPE 248

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 121/285 (42%), Gaps = 53/285 (18%)
Query: 323 FREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHAS-VAIKTLNNGLS---EEDFQ 378
            + ++  ++++A+++F  +  +   G +  VY+GRL     VA+K L    +   E  FQ
Sbjct: 17  LKRFSLRELQVASDNFXNK-NILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQFQ 75
Query: 379 AKVSFLTAVRHPHLVAVMGCC--SELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARA-- 434
            +V  ++   H +L+ + G C     + +V+ YM NG++            +C R R   
Sbjct: 76  TEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSV-----------ASCLRERPES 124
Query: 435 ---LRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL-NIC 490
              L W  R  IA     GL++LH      I+H  +  ++ILLD    A +   GL  + 
Sbjct: 125 QPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLM 184
Query: 491 DQLNV-------------------------RSDIRAFGTLLLHLLTGRNWAGLVEKAMAL 525
           D  +                          ++D+  +G +LL L+TG+    L    +A 
Sbjct: 185 DYKDXHVXXAVRGXIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLAR--LAN 242
Query: 526 DQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIA 570
           D   ++  LD   G+      E L  + L+    D++  + +++A
Sbjct: 243 DDDVML--LDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVA 285

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 46/214 (21%)
Query: 346 CAGDWTNVYRGRLNHAS-VAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           C G+   V+ G  N  + VAIKTL  G +S E F  +   +  +RH  LV +    SE  
Sbjct: 23  CFGE---VWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP 79
Query: 404 C-IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             IV EYM  G+L D L      Y        LR    + +A ++  G++++        
Sbjct: 80  IYIVTEYMSKGSLLDFLKGETGKY--------LRLPQLVDMAAQIASGMAYVERMN---Y 128
Query: 463 VHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNVR 496
           VH  L  ++IL+  NLV K++  GL                           +  +  ++
Sbjct: 129 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIK 188
Query: 497 SDIRAFGTLLLHLLT-GR-NWAGLVEKAMALDQT 528
           SD+ +FG LL  L T GR  + G+V + + LDQ 
Sbjct: 189 SDVWSFGILLTELTTKGRVPYPGMVNREV-LDQV 221

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 46/214 (21%)
Query: 346 CAGDWTNVYRGRLNHAS-VAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           C G+   V+ G  N  + VAIKTL  G +S E F  +   +  +RH  LV +    SE  
Sbjct: 20  CFGE---VWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP 76
Query: 404 C-IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             IV EYM  G+L D L      Y        LR    + +A ++  G++++        
Sbjct: 77  IXIVTEYMSKGSLLDFLKGETGKY--------LRLPQLVDMAAQIASGMAYVERMN---Y 125
Query: 463 VHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNVR 496
           VH  L  ++IL+  NLV K++  GL                           +  +  ++
Sbjct: 126 VHRDLRAANILVGENLVCKVADFGLARLIEDNEXTARQGAKFPIKWTAPEAALYGRFTIK 185
Query: 497 SDIRAFGTLLLHLLT-GR-NWAGLVEKAMALDQT 528
           SD+ +FG LL  L T GR  + G+V + + LDQ 
Sbjct: 186 SDVWSFGILLTELTTKGRVPYPGMVNREV-LDQV 218

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 106/233 (45%), Gaps = 42/233 (18%)
Query: 347 AGDWTNVYRGRLN-HASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCS-ELK 403
           AG +  V+    N H  VA+KT+  G +S E F A+ + +  ++H  LV +    + E  
Sbjct: 192 AGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPI 251
Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
            I+ E+M  G+L D L + + + +   +         I  + ++  G++F+   E R  +
Sbjct: 252 YIITEFMAKGSLLDFLKSDEGSKQPLPKL--------IDFSAQIAEGMAFI---EQRNYI 300
Query: 464 HGSLTPSSILLDRNLVAKISGLGLNICD----------------QLNVRSDIRAFGTLLL 507
           H  L  ++IL+  +LV KI+  GL                       ++SD+ +FG LL+
Sbjct: 301 HRDLRAANILVSASLVCKIADFGLARVGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLM 360
Query: 508 HLLT-GR-NWAGL--VEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKC 556
            ++T GR  + G+   E   AL++   M          P +  EEL  I ++C
Sbjct: 361 EIVTYGRIPYPGMSNPEVIRALERGYRMPR--------PENCPEELYNIMMRC 405

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 96/240 (40%), Gaps = 47/240 (19%)
Query: 346 CAGD-WTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           C G+ W   + G      VAIKTL  G +S E F  +   +  +RH  LV +    SE  
Sbjct: 196 CFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP 252
Query: 404 C-IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             IV EYM  G+L D L      Y        LR    + +A ++  G++++        
Sbjct: 253 IYIVTEYMSKGSLLDFLKGETGKY--------LRLPQLVDMAAQIASGMAYVERMN---Y 301
Query: 463 VHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNVR 496
           VH  L  ++IL+  NLV K++  GL                           +  +  ++
Sbjct: 302 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIK 361
Query: 497 SDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKC 556
           SD+ +FG LL  L T     G V     +++  L QV  G     P +  E L  +  +C
Sbjct: 362 SDVWSFGILLTELTT----KGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQC 417

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 96/240 (40%), Gaps = 47/240 (19%)
Query: 346 CAGD-WTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           C G+ W   + G      VAIKTL  G +S E F  +   +  +RH  LV +    SE  
Sbjct: 196 CFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP 252
Query: 404 C-IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             IV EYM  G+L D L      Y        LR    + +A ++  G++++        
Sbjct: 253 IYIVTEYMSKGSLLDFLKGETGKY--------LRLPQLVDMAAQIASGMAYVERMN---Y 301
Query: 463 VHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNVR 496
           VH  L  ++IL+  NLV K++  GL                           +  +  ++
Sbjct: 302 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIK 361
Query: 497 SDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKC 556
           SD+ +FG LL  L T     G V     +++  L QV  G     P +  E L  +  +C
Sbjct: 362 SDVWSFGILLTELTT----KGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQC 417

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 97/246 (39%), Gaps = 47/246 (19%)
Query: 346 CAGD-WTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           C G+ W   + G      VAIKTL  G +S E F  +   +  +RH  LV +    SE  
Sbjct: 30  CFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP 86
Query: 404 C-IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             IV EYM  G L D L      Y        LR    + +A ++  G++++        
Sbjct: 87  IYIVTEYMSKGCLLDFLKGEMGKY--------LRLPQLVDMAAQIASGMAYVERMN---Y 135
Query: 463 VHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNVR 496
           VH  L  ++IL+  NLV K++  GL                           +  +  ++
Sbjct: 136 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIK 195
Query: 497 SDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKC 556
           SD+ +FG LL  L T     G V     +++  L QV  G     P +  E L  +  +C
Sbjct: 196 SDVWSFGILLTELTT----KGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQC 251
Query: 557 LSADQD 562
              D +
Sbjct: 252 WRKDPE 257

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 42/196 (21%)
Query: 347 AGDWTNVYRGRLNHAS--VAIKTLNNGLSE-EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
            G +  VY G     S  VA+KTL     E E+F  + + +  ++HP+LV ++G C+   
Sbjct: 23  GGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP 82
Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              I+ E+M  GNL D L       + C+R + +  +  +++A ++   + +L   E + 
Sbjct: 83  PFYIIIEFMTYGNLLDYL-------RECNR-QEVSAVVLLYMATQISSAMEYL---EKKN 131
Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNV 495
            +H  L   + L+  N + K++  GL+                            ++ ++
Sbjct: 132 FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSI 191
Query: 496 RSDIRAFGTLLLHLLT 511
           +SD+ AFG LL  + T
Sbjct: 192 KSDVWAFGVLLWEIAT 207

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 42/196 (21%)
Query: 347 AGDWTNVYRGRLNHAS--VAIKTLNNGLSE-EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
            G +  VY G     S  VA+KTL     E E+F  + + +  ++HP+LV ++G C+   
Sbjct: 24  GGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP 83
Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              I+ E+M  GNL D L       + C+R + +  +  +++A ++   + +L   E + 
Sbjct: 84  PFYIIIEFMTYGNLLDYL-------RECNR-QEVNAVVLLYMATQISSAMEYL---EKKN 132
Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNV 495
            +H  L   + L+  N + K++  GL+                            ++ ++
Sbjct: 133 FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSI 192
Query: 496 RSDIRAFGTLLLHLLT 511
           +SD+ AFG LL  + T
Sbjct: 193 KSDVWAFGVLLWEIAT 208

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 96/240 (40%), Gaps = 47/240 (19%)
Query: 346 CAGD-WTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           C G+ W   + G      VAIKTL  G +S E F  +   +  +RH  LV +    SE  
Sbjct: 196 CFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP 252
Query: 404 C-IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             IV EYM  G+L D L      Y        LR    + +A ++  G++++        
Sbjct: 253 IYIVGEYMSKGSLLDFLKGETGKY--------LRLPQLVDMAAQIASGMAYVERMN---Y 301
Query: 463 VHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNVR 496
           VH  L  ++IL+  NLV K++  GL                           +  +  ++
Sbjct: 302 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIK 361
Query: 497 SDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKC 556
           SD+ +FG LL  L T     G V     +++  L QV  G     P +  E L  +  +C
Sbjct: 362 SDVWSFGILLTELTT----KGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQC 417

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 42/196 (21%)
Query: 347 AGDWTNVYRGRLNHAS--VAIKTLNNGLSE-EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
            G +  VY G     S  VA+KTL     E E+F  + + +  ++HP+LV ++G C+   
Sbjct: 23  GGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP 82
Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              I+ E+M  GNL D L       + C+R + +  +  +++A ++   + +L   E + 
Sbjct: 83  PFYIIIEFMTYGNLLDYL-------RECNR-QEVSAVVLLYMATQISSAMEYL---EKKN 131
Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNV 495
            +H  L   + L+  N + K++  GL+                            ++ ++
Sbjct: 132 FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSI 191
Query: 496 RSDIRAFGTLLLHLLT 511
           +SD+ AFG LL  + T
Sbjct: 192 KSDVWAFGVLLWEIAT 207

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 42/196 (21%)
Query: 347 AGDWTNVYRGRLNHAS--VAIKTLNNGLSE-EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
            G +  VY G     S  VA+KTL     E E+F  + + +  ++HP+LV ++G C+   
Sbjct: 21  GGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP 80
Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              I+ E+M  GNL D L       + C+R + +  +  +++A ++   + +L   E + 
Sbjct: 81  PFYIIIEFMTYGNLLDYL-------RECNR-QEVSAVVLLYMATQISSAMEYL---EKKN 129
Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNV 495
            +H  L   + L+  N + K++  GL+                            ++ ++
Sbjct: 130 FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSI 189
Query: 496 RSDIRAFGTLLLHLLT 511
           +SD+ AFG LL  + T
Sbjct: 190 KSDVWAFGVLLWEIAT 205

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 79/155 (50%), Gaps = 26/155 (16%)
Query: 348 GDWTNVYRGRL--NHASVAIKTLNNGLSE---------EDFQAKVSFLTAVRHPHLVAVM 396
           G +  V++GRL  + + VAIK+L  G SE         ++FQ +V  ++ + HP++V + 
Sbjct: 30  GGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLY 89
Query: 397 GCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
           G       +V E++P G+L  +L           +A  ++W  ++ +  ++ LG+ ++ +
Sbjct: 90  GLMHNPPRMVMEFVPCGDLYHRLL---------DKAHPIKWSVKLRLMLDIALGIEYMQN 140
Query: 457 TEPRPIVHGSLTPSSIL---LDRN--LVAKISGLG 486
             P PIVH  L   +I    LD N  + AK++  G
Sbjct: 141 QNP-PIVHRDLRSPNIFLQSLDENAPVCAKVADFG 174

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 42/196 (21%)
Query: 347 AGDWTNVYRGRLNHAS--VAIKTLNNGLSE-EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
            G +  VY G     S  VA+KTL     E E+F  + + +  ++HP+LV ++G C+   
Sbjct: 28  GGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP 87
Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              I+ E+M  GNL D L       + C+R + +  +  +++A ++   + +L   E + 
Sbjct: 88  PFYIIIEFMTYGNLLDYL-------RECNR-QEVNAVVLLYMATQISSAMEYL---EKKN 136
Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNV 495
            +H  L   + L+  N + K++  GL+                            ++ ++
Sbjct: 137 FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSI 196
Query: 496 RSDIRAFGTLLLHLLT 511
           +SD+ AFG LL  + T
Sbjct: 197 KSDVWAFGVLLWEIAT 212

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 106/242 (43%), Gaps = 28/242 (11%)
Query: 348 GDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELKCIVF 407
           G +  V + +     VAIK + +    + F  ++  L+ V HP++V + G C    C+V 
Sbjct: 19  GAFGVVCKAKWRAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACLNPVCLVM 78
Query: 408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCL----GLSFLHSTEPRPIV 463
           EY   G+L + L  ++      + A A+ W          CL    G+++LHS +P+ ++
Sbjct: 79  EYAEGGSLYNVLHGAE-PLPYYTAAHAMSW----------CLQCSQGVAYLHSMQPKALI 127
Query: 464 HGSLTPSSILL-DRNLVAKISGLGLNICD-QLNVRSDIRAFGTLLLHLLTGRNWAGLVEK 521
           H  L P ++LL     V KI   G   CD Q ++ ++  +   +   +  G N++   EK
Sbjct: 128 HRDLKPPNLLLVAGGTVLKICDFG-TACDIQTHMTNNKGSAAWMAPEVFEGSNYS---EK 183
Query: 522 AMALDQ-TTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVR 580
                    L +V+       P D   E+ G A + + A  +  R   I  + K ++ + 
Sbjct: 184 CDVFSWGIILWEVITRRK---PFD---EIGGPAFRIMWAVHNGTRPPLIKNLPKPIESLM 237
Query: 581 KK 582
            +
Sbjct: 238 TR 239

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 42/196 (21%)
Query: 347 AGDWTNVYRGRLNHAS--VAIKTLNNGLSE-EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
            G +  VY G     S  VA+KTL     E E+F  + + +  ++HP+LV ++G C+   
Sbjct: 25  GGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP 84
Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              I+ E+M  GNL D L       + C+R + +  +  +++A ++   + +L   E + 
Sbjct: 85  PFYIITEFMTYGNLLDYL-------RECNR-QEVNAVVLLYMATQISSAMEYL---EKKN 133
Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNV 495
            +H  L   + L+  N + K++  GL+                            ++ ++
Sbjct: 134 FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSI 193
Query: 496 RSDIRAFGTLLLHLLT 511
           +SD+ AFG LL  + T
Sbjct: 194 KSDVWAFGVLLWEIAT 209

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 42/196 (21%)
Query: 347 AGDWTNVYRGRLNHAS--VAIKTLNNGLSE-EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
            G +  VY G     S  VA+KTL     E E+F  + + +  ++HP+LV ++G C+   
Sbjct: 21  GGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP 80
Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              I+ E+M  GNL D L       + C+R + +  +  +++A ++   + +L   E + 
Sbjct: 81  PFYIITEFMTYGNLLDYL-------RECNR-QEVSAVVLLYMATQISSAMEYL---EKKN 129
Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNV 495
            +H  L   + L+  N + K++  GL+                            ++ ++
Sbjct: 130 FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTFTAHAGAKFPIKWTAPESLAYNKFSI 189
Query: 496 RSDIRAFGTLLLHLLT 511
           +SD+ AFG LL  + T
Sbjct: 190 KSDVWAFGVLLWEIAT 205

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 21/148 (14%)
Query: 348 GDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELKCIVF 407
           G +  V + +     VAIK + +    + F  ++  L+ V HP++V + G C    C+V 
Sbjct: 20  GAFGVVCKAKWRAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACLNPVCLVM 79
Query: 408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCL----GLSFLHSTEPRPIV 463
           EY   G+L + L  ++      + A A+ W          CL    G+++LHS +P+ ++
Sbjct: 80  EYAEGGSLYNVLHGAE-PLPYYTAAHAMSW----------CLQCSQGVAYLHSMQPKALI 128
Query: 464 HGSLTPSSILLDRNLVAKISGLGLNICD 491
           H  L P ++L    LVA   G  L ICD
Sbjct: 129 HRDLKPPNLL----LVA--GGTVLKICD 150

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 42/196 (21%)
Query: 347 AGDWTNVYRGRLNHAS--VAIKTLNNGLSE-EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
            G +  VY G     S  VA+KTL     E E+F  + + +  ++HP+LV ++G C+   
Sbjct: 24  GGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP 83
Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              I+ E+M  GNL D L       + C+R + +  +  +++A ++   + +L   E + 
Sbjct: 84  PFYIITEFMTYGNLLDYL-------RECNR-QEVNAVVLLYMATQISSAMEYL---EKKN 132
Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNV 495
            +H  L   + L+  N + K++  GL+                            ++ ++
Sbjct: 133 FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAPAGAKFPIKWTAPESLAYNKFSI 192
Query: 496 RSDIRAFGTLLLHLLT 511
           +SD+ AFG LL  + T
Sbjct: 193 KSDVWAFGVLLWEIAT 208

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 42/196 (21%)
Query: 347 AGDWTNVYRGRLNHAS--VAIKTLNNGLSE-EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
            G +  VY G     S  VA+KTL     E E+F  + + +  ++HP+LV ++G C+   
Sbjct: 36  GGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP 95
Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              I+ E+M  GNL D L       + C+R + +  +  +++A ++   + +L   E + 
Sbjct: 96  PFYIITEFMTYGNLLDYL-------RECNR-QEVNAVVLLYMATQISSAMEYL---EKKN 144
Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNV 495
            +H  L   + L+  N + K++  GL+                            ++ ++
Sbjct: 145 FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSI 204
Query: 496 RSDIRAFGTLLLHLLT 511
           +SD+ AFG LL  + T
Sbjct: 205 KSDVWAFGVLLWEIAT 220

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 42/196 (21%)
Query: 347 AGDWTNVYRGRLNHAS--VAIKTLNNGLSE-EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
            G +  VY G     S  VA+KTL     E E+F  + + +  ++HP+LV ++G C+   
Sbjct: 28  GGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP 87
Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              I+ E+M  GNL D L       + C+R + +  +  +++A ++   + +L   E + 
Sbjct: 88  PFYIITEFMTYGNLLDYL-------RECNR-QEVNAVVLLYMATQISSAMEYL---EKKN 136
Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNV 495
            +H  L   + L+  N + K++  GL+                            ++ ++
Sbjct: 137 FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSI 196
Query: 496 RSDIRAFGTLLLHLLT 511
           +SD+ AFG LL  + T
Sbjct: 197 KSDVWAFGVLLWEIAT 212

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 42/196 (21%)
Query: 347 AGDWTNVYRGRLNHAS--VAIKTLNNGLSE-EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
            G +  VY G     S  VA+KTL     E E+F  + + +  ++HP+LV ++G C+   
Sbjct: 28  GGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP 87
Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              I+ E+M  GNL D L       + C+R + +  +  +++A ++   + +L   E + 
Sbjct: 88  PFYIITEFMTYGNLLDYL-------RECNR-QEVSAVVLLYMATQISSAMEYL---EKKN 136
Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNV 495
            +H  L   + L+  N + K++  GL+                            ++ ++
Sbjct: 137 FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSI 196
Query: 496 RSDIRAFGTLLLHLLT 511
           +SD+ AFG LL  + T
Sbjct: 197 KSDVWAFGVLLWEIAT 212

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 42/196 (21%)
Query: 347 AGDWTNVYRGRLNHAS--VAIKTLNNGLSE-EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
            G +  VY G     S  VA+KTL     E E+F  + + +  ++HP+LV ++G C+   
Sbjct: 25  GGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP 84
Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              I+ E+M  GNL D L       + C+R + +  +  +++A ++   + +L   E + 
Sbjct: 85  PFYIITEFMTYGNLLDYL-------RECNR-QEVNAVVLLYMATQISSAMEYL---EKKN 133
Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNV 495
            +H  L   + L+  N + K++  GL+                            ++ ++
Sbjct: 134 FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSI 193
Query: 496 RSDIRAFGTLLLHLLT 511
           +SD+ AFG LL  + T
Sbjct: 194 KSDVWAFGVLLWEIAT 209

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 42/196 (21%)
Query: 347 AGDWTNVYRGRLNHAS--VAIKTLNNGLSE-EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
            G +  VY G     S  VA+KTL     E E+F  + + +  ++HP+LV ++G C+   
Sbjct: 23  GGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP 82
Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              I+ E+M  GNL D L       + C+R + +  +  +++A ++   + +L   E + 
Sbjct: 83  PFYIITEFMTYGNLLDYL-------RECNR-QEVSAVVLLYMATQISSAMEYL---EKKN 131
Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNV 495
            +H  L   + L+  N + K++  GL+                            ++ ++
Sbjct: 132 FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSI 191
Query: 496 RSDIRAFGTLLLHLLT 511
           +SD+ AFG LL  + T
Sbjct: 192 KSDVWAFGVLLWEIAT 207

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 42/196 (21%)
Query: 347 AGDWTNVYRGRLNHAS--VAIKTLNNGLSE-EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
            G +  VY G     S  VA+KTL     E E+F  + + +  ++HP+LV ++G C+   
Sbjct: 25  GGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP 84
Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              I+ E+M  GNL D L       + C+R + +  +  +++A ++   + +L   E + 
Sbjct: 85  PFYIITEFMTYGNLLDYL-------RECNR-QEVNAVVLLYMATQISSAMEYL---EKKN 133
Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNV 495
            +H  L   + L+  N + K++  GL+                            ++ ++
Sbjct: 134 FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAPAGAKFPIKWTAPESLAYNKFSI 193
Query: 496 RSDIRAFGTLLLHLLT 511
           +SD+ AFG LL  + T
Sbjct: 194 KSDVWAFGVLLWEIAT 209

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 42/196 (21%)
Query: 347 AGDWTNVYRGRLNHAS--VAIKTLNNGLSE-EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
            G +  VY G     S  VA+KTL     E E+F  + + +  ++HP+LV ++G C+   
Sbjct: 23  GGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP 82
Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              I+ E+M  GNL D L       + C+R + +  +  +++A ++   + +L   E + 
Sbjct: 83  PFYIITEFMTYGNLLDYL-------RECNR-QEVSAVVLLYMATQISSAMEYL---EKKN 131
Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNV 495
            +H  L   + L+  N + K++  GL+                            ++ ++
Sbjct: 132 FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSI 191
Query: 496 RSDIRAFGTLLLHLLT 511
           +SD+ AFG LL  + T
Sbjct: 192 KSDVWAFGVLLWEIAT 207

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 71/138 (51%), Gaps = 21/138 (15%)
Query: 348 GDWTNVYRGRL--NHASVAIKTLNNGLSE---------EDFQAKVSFLTAVRHPHLVAVM 396
           G +  V++GRL  + + VAIK+L  G SE         ++FQ +V  ++ + HP++V + 
Sbjct: 30  GGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLY 89
Query: 397 GCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
           G       +V E++P G+L  +L           +A  ++W  ++ +  ++ LG+ ++ +
Sbjct: 90  GLMHNPPRMVMEFVPCGDLYHRLL---------DKAHPIKWSVKLRLMLDIALGIEYMQN 140
Query: 457 TEPRPIVHGSLTPSSILL 474
             P PIVH  L   +I L
Sbjct: 141 QNP-PIVHRDLRSPNIFL 157

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 42/196 (21%)
Query: 347 AGDWTNVYRGRLNHAS--VAIKTLNNGLSE-EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
            G +  VY G     S  VA+KTL     E E+F  + + +  ++HP+LV ++G C+   
Sbjct: 21  GGQFGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP 80
Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              I+ E+M  GNL D L       + C+R + +  +  +++A ++   + +L   E + 
Sbjct: 81  PFYIITEFMTYGNLLDYL-------RECNR-QEVSAVVLLYMATQISSAMEYL---EKKN 129
Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNV 495
            +H  L   + L+  N + K++  GL+                            ++ ++
Sbjct: 130 FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSI 189
Query: 496 RSDIRAFGTLLLHLLT 511
           +SD+ AFG LL  + T
Sbjct: 190 KSDVWAFGVLLWEIAT 205

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 42/196 (21%)
Query: 347 AGDWTNVYRGRLNHAS--VAIKTLNNGLSE-EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
            G +  VY G     S  VA+KTL     E E+F  + + +  ++HP+LV ++G C+   
Sbjct: 28  GGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP 87
Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              I+ E+M  GNL D L       + C+R + +  +  +++A ++   + +L   E + 
Sbjct: 88  PFYIITEFMTYGNLLDYL-------RECNR-QEVNAVVLLYMATQISSAMEYL---EKKN 136
Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNV 495
            +H  L   + L+  N + K++  GL+                            ++ ++
Sbjct: 137 FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSI 196
Query: 496 RSDIRAFGTLLLHLLT 511
           +SD+ AFG LL  + T
Sbjct: 197 KSDVWAFGVLLWEIAT 212

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 93/214 (43%), Gaps = 46/214 (21%)
Query: 346 CAGDWTNVYRGRLNHAS-VAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           C G+   V+ G  N  + VAIKTL  G +S E F  +   +  +RH  LV +    SE  
Sbjct: 27  CFGE---VWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP 83
Query: 404 C-IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             IV EYM  G+L D L      Y        LR    + ++ ++  G++++        
Sbjct: 84  IYIVTEYMNKGSLLDFLKGETGKY--------LRLPQLVDMSAQIASGMAYVERMN---Y 132
Query: 463 VHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNVR 496
           VH  L  ++IL+  NLV K++  GL                           +  +  ++
Sbjct: 133 VHRDLRAANILVGENLVCKVADFGLARLIEDNEWTARQGAKFPIKWTAPEAALYGRFTIK 192
Query: 497 SDIRAFGTLLLHLLT-GR-NWAGLVEKAMALDQT 528
           SD+ +FG LL  L T GR  + G+V + + LDQ 
Sbjct: 193 SDVWSFGILLTELTTKGRVPYPGMVNREV-LDQV 225

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 93/214 (43%), Gaps = 46/214 (21%)
Query: 346 CAGDWTNVYRGRLNHAS-VAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           C G+   V+ G  N  + VAIKTL  G +S E F  +   +  +RH  LV +    SE  
Sbjct: 27  CFGE---VWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP 83
Query: 404 C-IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             IV EYM  G+L D L      Y        LR    + ++ ++  G++++        
Sbjct: 84  IYIVTEYMNKGSLLDFLKGETGKY--------LRLPQLVDMSAQIASGMAYVERMN---Y 132
Query: 463 VHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNVR 496
           VH  L  ++IL+  NLV K++  GL                           +  +  ++
Sbjct: 133 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIK 192
Query: 497 SDIRAFGTLLLHLLT-GR-NWAGLVEKAMALDQT 528
           SD+ +FG LL  L T GR  + G+V + + LDQ 
Sbjct: 193 SDVWSFGILLTELTTKGRVPYPGMVNREV-LDQV 225

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 42/196 (21%)
Query: 347 AGDWTNVYRGRLNHAS--VAIKTLNNGLSE-EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
            G +  VY G     S  VA+KTL     E E+F  + + +  ++HP+LV ++G C+   
Sbjct: 27  GGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP 86
Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              I+ E+M  GNL D L       + C+R + +  +  +++A ++   + +L   E + 
Sbjct: 87  PFYIITEFMTYGNLLDYL-------RECNR-QEVNAVVLLYMATQISSAMEYL---EKKN 135
Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNV 495
            +H  L   + L+  N + K++  GL+                            ++ ++
Sbjct: 136 FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSI 195
Query: 496 RSDIRAFGTLLLHLLT 511
           +SD+ AFG LL  + T
Sbjct: 196 KSDVWAFGVLLWEIAT 211

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 42/196 (21%)
Query: 347 AGDWTNVYRGRLNHAS--VAIKTLNNGLSE-EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
            G +  VY G     S  VA+KTL     E E+F  + + +  ++HP+LV ++G C+   
Sbjct: 28  GGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP 87
Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              I+ E+M  GNL D L       + C+R + +  +  +++A ++   + +L   E + 
Sbjct: 88  PFYIITEFMTYGNLLDYL-------RECNR-QEVNAVVLLYMATQISSAMEYL---EKKN 136
Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNV 495
            +H  L   + L+  N + K++  GL+                            ++ ++
Sbjct: 137 FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSI 196
Query: 496 RSDIRAFGTLLLHLLT 511
           +SD+ AFG LL  + T
Sbjct: 197 KSDVWAFGVLLWEIAT 212

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 42/196 (21%)
Query: 347 AGDWTNVYRGRLNHAS--VAIKTLNNGLSE-EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
            G +  VY G     S  VA+KTL     E E+F  + + +  ++HP+LV ++G C+   
Sbjct: 23  GGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP 82
Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              I+ E+M  GNL D L       + C+R + +  +  +++A ++   + +L   E + 
Sbjct: 83  PFYIITEFMTYGNLLDYL-------RECNR-QEVNAVVLLYMATQISSAMEYL---EKKN 131
Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNV 495
            +H  L   + L+  N + K++  GL+                            ++ ++
Sbjct: 132 FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSI 191
Query: 496 RSDIRAFGTLLLHLLT 511
           +SD+ AFG LL  + T
Sbjct: 192 KSDVWAFGVLLWEIAT 207

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 42/196 (21%)
Query: 347 AGDWTNVYRGRLNHAS--VAIKTLNNGLSE-EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
            G +  VY G     S  VA+KTL     E E+F  + + +  ++HP+LV ++G C+   
Sbjct: 23  GGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP 82
Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              I+ E+M  GNL D L       + C+R + +  +  +++A ++   + +L   E + 
Sbjct: 83  PFYIITEFMTYGNLLDYL-------RECNR-QEVNAVVLLYMATQISSAMEYL---EKKN 131
Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNV 495
            +H  L   + L+  N + K++  GL+                            ++ ++
Sbjct: 132 FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSI 191
Query: 496 RSDIRAFGTLLLHLLT 511
           +SD+ AFG LL  + T
Sbjct: 192 KSDVWAFGVLLWEIAT 207

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 89/196 (45%), Gaps = 42/196 (21%)
Query: 347 AGDWTNVYRGRLNHAS--VAIKTLNNGLSE-EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
            G +  VY G     S  VA+KTL     E E+F  + + +  ++HP+LV ++G C+   
Sbjct: 230 GGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP 289
Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              I+ E+M  GNL D L       + C+R + +  +  +++A ++   + +L   E + 
Sbjct: 290 PFYIITEFMTYGNLLDYL-------RECNR-QEVSAVVLLYMATQISSAMEYL---EKKN 338
Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNV 495
            +H +L   + L+  N + K++  GL+                            ++ ++
Sbjct: 339 FIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSI 398
Query: 496 RSDIRAFGTLLLHLLT 511
           +SD+ AFG LL  + T
Sbjct: 399 KSDVWAFGVLLWEIAT 414

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 89/196 (45%), Gaps = 42/196 (21%)
Query: 347 AGDWTNVYRGRLNHAS--VAIKTLNNGLSE-EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
            G +  VY G     S  VA+KTL     E E+F  + + +  ++HP+LV ++G C+   
Sbjct: 269 GGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP 328
Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              I+ E+M  GNL D L       + C+R + +  +  +++A ++   + +L   E + 
Sbjct: 329 PFYIITEFMTYGNLLDYL-------RECNR-QEVNAVVLLYMATQISSAMEYL---EKKN 377
Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLN--------------------------ICDQLNV 495
            +H +L   + L+  N + K++  GL+                            ++ ++
Sbjct: 378 FIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSI 437
Query: 496 RSDIRAFGTLLLHLLT 511
           +SD+ AFG LL  + T
Sbjct: 438 KSDVWAFGVLLWEIAT 453

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 30/181 (16%)
Query: 326 YAAEDIRLATEDFSERFRLKC--------AGDWTNVYRGRLN-----HASVAIKTLNNGL 372
           +  ED   A  +F++     C        AG++  V  GRL         VAIKTL  G 
Sbjct: 3   HTYEDPNQAVHEFAKEIEASCITIERVIGAGEFGEVCSGRLKLPGKRELPVAIKTLKVGY 62
Query: 373 SEE---DFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYK 427
           +E+   DF  + S +    HP+++ + G  ++ K   IV EYM NG+L   L  +   + 
Sbjct: 63  TEKQRRDFLGEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDTFLKKNDGQFT 122
Query: 428 NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
                  LR          +  G+ +L        VH  L   +IL++ NLV K+S  GL
Sbjct: 123 VIQLVGMLR---------GISAGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGL 170
Query: 488 N 488
           +
Sbjct: 171 S 171

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 16/145 (11%)
Query: 348 GDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK---C 404
           G++ +V  G      VA+K + N  + + F A+ S +T +RH +LV ++G   E K    
Sbjct: 32  GEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLY 91
Query: 405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLD-RIHIAHEVCLGLSFLHSTEPRPIV 463
           IV EYM  G+L D L          SR R++   D  +  + +VC  + +L   E    V
Sbjct: 92  IVTEYMAKGSLVDYL---------RSRGRSVLGGDCLLKFSLDVCEAMEYL---EGNNFV 139
Query: 464 HGSLTPSSILLDRNLVAKISGLGLN 488
           H  L   ++L+  + VAK+S  GL 
Sbjct: 140 HRDLAARNVLVSEDNVAKVSDFGLT 164

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 26/173 (15%)
Query: 322 AFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEE---DFQ 378
            F +   + IR   E    +  L C  D TN   G +    VA+K L  G   +    +Q
Sbjct: 4   VFHKRYLKKIRDLGEGHFGKVSLYCY-DPTNDGTGEM----VAVKALKEGCGPQLRSGWQ 58
Query: 379 AKVSFLTAVRHPHLVAVMGCCSELK----CIVFEYMPNGNLRDKLFTSQRNYKNCSRARA 434
            ++  L  + H H+V   GCC +       +V EY+P G+LRD L       ++C     
Sbjct: 59  REIEILRTLYHEHIVKYKGCCEDQGEKSVQLVMEYVPLGSLRDYLP------RHCVGLAQ 112
Query: 435 LRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
           L     +  A ++C G+++LH+      +H +L   ++LLD + + KI   GL
Sbjct: 113 L-----LLFAQQICEGMAYLHAQH---YIHRALAARNVLLDNDRLVKIGDFGL 157

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 26/173 (15%)
Query: 322 AFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEE---DFQ 378
            F +   + IR   E    +  L C  D TN   G +    VA+K L  G   +    +Q
Sbjct: 5   VFHKRYLKKIRDLGEGHFGKVSLYCY-DPTNDGTGEM----VAVKALKEGCGPQLRSGWQ 59
Query: 379 AKVSFLTAVRHPHLVAVMGCCSELK----CIVFEYMPNGNLRDKLFTSQRNYKNCSRARA 434
            ++  L  + H H+V   GCC +       +V EY+P G+LRD L       ++C     
Sbjct: 60  REIEILRTLYHEHIVKYKGCCEDQGEKSVQLVMEYVPLGSLRDYLP------RHCVGLAQ 113
Query: 435 LRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
           L     +  A ++C G+++LH+      +H +L   ++LLD + + KI   GL
Sbjct: 114 L-----LLFAQQICEGMAYLHAQH---YIHRALAARNVLLDNDRLVKIGDFGL 158

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 16/145 (11%)
Query: 348 GDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK---C 404
           G++ +V  G      VA+K + N  + + F A+ S +T +RH +LV ++G   E K    
Sbjct: 204 GEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLY 263
Query: 405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLD-RIHIAHEVCLGLSFLHSTEPRPIV 463
           IV EYM  G+L D L          SR R++   D  +  + +VC  + +L   E    V
Sbjct: 264 IVTEYMAKGSLVDYLR---------SRGRSVLGGDCLLKFSLDVCEAMEYL---EGNNFV 311
Query: 464 HGSLTPSSILLDRNLVAKISGLGLN 488
           H  L   ++L+  + VAK+S  GL 
Sbjct: 312 HRDLAARNVLVSEDNVAKVSDFGLT 336

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 16/145 (11%)
Query: 348 GDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK---C 404
           G++ +V  G      VA+K + N  + + F A+ S +T +RH +LV ++G   E K    
Sbjct: 17  GEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLY 76
Query: 405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLD-RIHIAHEVCLGLSFLHSTEPRPIV 463
           IV EYM  G+L D L          SR R++   D  +  + +VC  + +L   E    V
Sbjct: 77  IVTEYMAKGSLVDYLR---------SRGRSVLGGDCLLKFSLDVCEAMEYL---EGNNFV 124
Query: 464 HGSLTPSSILLDRNLVAKISGLGLN 488
           H  L   ++L+  + VAK+S  GL 
Sbjct: 125 HRDLAARNVLVSEDNVAKVSDFGLT 149

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 16/145 (11%)
Query: 348 GDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK---C 404
           G++ +V  G      VA+K + N  + + F A+ S +T +RH +LV ++G   E K    
Sbjct: 23  GEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLY 82
Query: 405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLD-RIHIAHEVCLGLSFLHSTEPRPIV 463
           IV EYM  G+L D L          SR R++   D  +  + +VC  + +L   E    V
Sbjct: 83  IVTEYMAKGSLVDYLR---------SRGRSVLGGDCLLKFSLDVCEAMEYL---EGNNFV 130
Query: 464 HGSLTPSSILLDRNLVAKISGLGLN 488
           H  L   ++L+  + VAK+S  GL 
Sbjct: 131 HRDLAARNVLVSEDNVAKVSDFGLT 155

>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights Into Receptor Autoregulation Length = 343

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 102/243 (41%), Gaps = 55/243 (22%)
Query: 363 VAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRD 417
           VA+K L    S   + DFQ + + +    +P++V ++G C+  K  C++FEYM  G+L +
Sbjct: 80  VAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDL-N 138
Query: 418 KLFTSQRNYKNCS--------RARA-------LRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
           +   S   +  CS        RAR        L   +++ IA +V  G+++L     R  
Sbjct: 139 EFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE---RKF 195
Query: 463 VHGSLTPSSILLDRNLVAKISGLGL--NIC----------DQLNVR-------------- 496
           VH  L   + L+  N+V KI+  GL  NI           D + +R              
Sbjct: 196 VHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTT 255
Query: 497 -SDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALK 555
            SD+ A+G +L  + +     GL        +  +  V DGN    P +   EL  +   
Sbjct: 256 ESDVWAYGVVLWEIFS----YGLQPYYGMAHEEVIYYVRDGNILACPENCPLELYNLMRL 311
Query: 556 CLS 558
           C S
Sbjct: 312 CWS 314

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 108/243 (44%), Gaps = 52/243 (21%)
Query: 347 AGDWTNVYRGRLN-HASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCS-ELK 403
           AG +  V+    N H  VA+KT+  G +S E F A+ + +  ++H  LV +    + E  
Sbjct: 198 AGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPI 257
Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
            I+ E+M  G+L D L + + + +   +         I  + ++  G++F+   E R  +
Sbjct: 258 YIITEFMAKGSLLDFLKSDEGSKQPLPKL--------IDFSAQIAEGMAFI---EQRNYI 306
Query: 464 HGSLTPSSILLDRNLVAKISGLGLN--ICDQ------------------------LNVRS 497
           H  L  ++IL+  +LV KI+  GL   I D                           ++S
Sbjct: 307 HRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKS 366
Query: 498 DIRAFGTLLLHLLT-GR-NWAGL--VEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIA 553
           D+ +FG LL+ ++T GR  + G+   E   AL++   M          P +  EEL  I 
Sbjct: 367 DVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPR--------PENCPEELYNIM 418
Query: 554 LKC 556
           ++C
Sbjct: 419 MRC 421

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 22/152 (14%)
Query: 347 AGDWTNVYRGRLN-----HASVAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGC 398
           AG++  V  GRL        SVAIKTL  G +E+   DF  + S +    HP+++ + G 
Sbjct: 55  AGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGV 114
Query: 399 CSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
            ++ K   IV EYM NG+L   L      +        LR          +  G+ +L  
Sbjct: 115 VTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLR---------GIASGMKYLSD 165
Query: 457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
                 VH  L   +IL++ NLV K+S  GL+
Sbjct: 166 MG---FVHRDLAARNILINSNLVCKVSDFGLS 194

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 108/243 (44%), Gaps = 52/243 (21%)
Query: 347 AGDWTNVYRGRLN-HASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCS-ELK 403
           AG +  V+    N H  VA+KT+  G +S E F A+ + +  ++H  LV +    + E  
Sbjct: 25  AGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPI 84
Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
            I+ E+M  G+L D L + + + +   +         I  + ++  G++F+   E R  +
Sbjct: 85  YIITEFMAKGSLLDFLKSDEGSKQPLPKL--------IDFSAQIAEGMAFI---EQRNYI 133
Query: 464 HGSLTPSSILLDRNLVAKISGLGLN--ICDQ------------------------LNVRS 497
           H  L  ++IL+  +LV KI+  GL   I D                           ++S
Sbjct: 134 HRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKS 193
Query: 498 DIRAFGTLLLHLLT-GR-NWAGL--VEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIA 553
           D+ +FG LL+ ++T GR  + G+   E   AL++   M          P +  EEL  I 
Sbjct: 194 DVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPR--------PENCPEELYNIM 245
Query: 554 LKC 556
           ++C
Sbjct: 246 MRC 248

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 22/152 (14%)
Query: 347 AGDWTNVYRGRLN-----HASVAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGC 398
           AG++  V  GRL        SVAIKTL  G +E+   DF  + S +    HP+++ + G 
Sbjct: 55  AGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGV 114
Query: 399 CSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
            ++ K   IV EYM NG+L   L      +        LR          +  G+ +L  
Sbjct: 115 VTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLR---------GIASGMKYLSD 165
Query: 457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
                 VH  L   +IL++ NLV K+S  GL+
Sbjct: 166 MG---YVHRDLAARNILINSNLVCKVSDFGLS 194

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 22/152 (14%)
Query: 347 AGDWTNVYRGRLN-----HASVAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGC 398
           AG++  V  GRL        SVAIKTL  G +E+   DF  + S +    HP+++ + G 
Sbjct: 55  AGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGV 114
Query: 399 CSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
            ++ K   IV EYM NG+L   L      +        LR          +  G+ +L  
Sbjct: 115 VTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLR---------GIASGMKYLSD 165
Query: 457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
                 VH  L   +IL++ NLV K+S  GL+
Sbjct: 166 MG---YVHRDLAARNILINSNLVCKVSDFGLS 194

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 22/152 (14%)
Query: 347 AGDWTNVYRGRLN-----HASVAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGC 398
           AG++  V  GRL        SVAIKTL  G +E+   DF  + S +    HP+++ + G 
Sbjct: 26  AGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGV 85
Query: 399 CSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
            ++ K   IV EYM NG+L   L      +        LR          +  G+ +L  
Sbjct: 86  VTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLR---------GIASGMKYLSD 136
Query: 457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
                 VH  L   +IL++ NLV K+S  GL+
Sbjct: 137 MG---YVHRDLAARNILINSNLVCKVSDFGLS 165

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 22/152 (14%)
Query: 347 AGDWTNVYRGRLN-----HASVAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGC 398
           AG++  V  GRL        SVAIKTL  G +E+   DF  + S +    HP+++ + G 
Sbjct: 55  AGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGV 114
Query: 399 CSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
            ++ K   IV EYM NG+L   L      +        LR          +  G+ +L  
Sbjct: 115 VTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLR---------GIASGMKYLSD 165
Query: 457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
                 VH  L   +IL++ NLV K+S  GL+
Sbjct: 166 MG---YVHRDLAARNILINSNLVCKVSDFGLS 194

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 22/152 (14%)
Query: 347 AGDWTNVYRGRLN-----HASVAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGC 398
           AG++  V  GRL        SVAIKTL  G +E+   DF  + S +    HP+++ + G 
Sbjct: 55  AGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGV 114
Query: 399 CSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
            ++ K   IV EYM NG+L   L      +        LR          +  G+ +L  
Sbjct: 115 VTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLR---------GIASGMKYLSD 165
Query: 457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
                 VH  L   +IL++ NLV K+S  GL+
Sbjct: 166 MG---YVHRDLAARNILINSNLVCKVSDFGLS 194

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 22/152 (14%)
Query: 347 AGDWTNVYRGRLN-----HASVAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGC 398
           AG++  V  GRL        SVAIKTL  G +E+   DF  + S +    HP+++ + G 
Sbjct: 43  AGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGV 102
Query: 399 CSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
            ++ K   IV EYM NG+L   L      +        LR          +  G+ +L  
Sbjct: 103 VTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLR---------GIASGMKYLSD 153
Query: 457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
                 VH  L   +IL++ NLV K+S  GL+
Sbjct: 154 MG---YVHRDLAARNILINSNLVCKVSDFGLS 182

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 22/152 (14%)
Query: 347 AGDWTNVYRGRLN-----HASVAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGC 398
           AG++  V  GRL        SVAIKTL  G +E+   DF  + S +    HP+++ + G 
Sbjct: 53  AGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGV 112
Query: 399 CSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
            ++ K   IV EYM NG+L   L      +        LR          +  G+ +L  
Sbjct: 113 VTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLR---------GIASGMKYLSD 163
Query: 457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
                 VH  L   +IL++ NLV K+S  GL+
Sbjct: 164 MG---YVHRDLAARNILINSNLVCKVSDFGLS 192

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 68/151 (45%), Gaps = 22/151 (14%)
Query: 347 AGDWTNVYRGRLN-----HASVAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGC 398
           AG++  V  GRL        SVAIKTL  G +E+   DF  + S +    HP+++ + G 
Sbjct: 55  AGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGV 114
Query: 399 CSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
            ++ K   IV EYM NG+L   L      +        LR          +  G+ +L  
Sbjct: 115 VTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLR---------GIASGMKYLSD 165
Query: 457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
                 VH  L   +IL++ NLV K+S  GL
Sbjct: 166 MG---YVHRDLAARNILINSNLVCKVSDFGL 193

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 68/152 (44%), Gaps = 22/152 (14%)
Query: 347 AGDWTNVYRGRLN-----HASVAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGC 398
           AG++  V  GRL        SVAIKTL  G +E+   DF  + S +    HP+++ + G 
Sbjct: 55  AGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGV 114
Query: 399 CSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
            ++ K   IV EYM NG+L   L      +        LR          +  G+ +L  
Sbjct: 115 VTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLR---------GIASGMKYLSD 165
Query: 457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
                 VH  L   +IL++ NLV K+S  GL 
Sbjct: 166 MG---YVHRDLAARNILINSNLVCKVSDFGLG 194

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 41/197 (20%)
Query: 347 AGDWTNVYRGRLN-HASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCS-ELK 403
           AG +  V+ G  N H  VA+K+L  G +S + F A+ + +  ++H  LV +    + E  
Sbjct: 28  AGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPI 87
Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
            I+ EYM NG+L D L T        ++         + +A ++  G++F+   E R  +
Sbjct: 88  YIITEYMENGSLVDFLKTPSGIKLTINKL--------LDMAAQIAEGMAFI---EERNYI 136
Query: 464 HGSLTPSSILLDRNLVAKISGLGLN--ICDQ------------------------LNVRS 497
           H  L  ++IL+   L  KI+  GL   I D                           ++S
Sbjct: 137 HRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKS 196
Query: 498 DIRAFGTLLLHLLT-GR 513
           D+ +FG LL  ++T GR
Sbjct: 197 DVWSFGILLTEIVTHGR 213

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 23/159 (14%)
Query: 341 RFRLKCAGDWTNVYRGRLNHAS------VAIKTLNNGLSEE---DFQAKVSFLTAVRHPH 391
           R ++  AG++  VY+G L  +S      VAIKTL  G +E+   DF  +   +    H +
Sbjct: 48  RQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHN 107
Query: 392 LVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCL 449
           ++ + G  S+ K   I+ EYM NG L DK    +    +         L  + +   +  
Sbjct: 108 IIRLEGVISKYKPMMIITEYMENGAL-DKFLREKDGEFSV--------LQLVGMLRGIAA 158
Query: 450 GLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
           G+ +L +      VH  L   +IL++ NLV K+S  GL+
Sbjct: 159 GMKYLANMN---YVHRDLAARNILVNSNLVCKVSDFGLS 194

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 86/194 (44%), Gaps = 40/194 (20%)
Query: 347 AGDWTNVYRGRLN-HASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCS-ELK 403
           AG +  V+ G  N H  VA+K+L  G +S + F A+ + +  ++H  LV +    + E  
Sbjct: 29  AGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPI 88
Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
            I+ EYM NG+L D L T        ++         + +A ++  G++F+   E R  +
Sbjct: 89  YIITEYMENGSLVDFLKTPSGIKLTINKL--------LDMAAQIAEGMAFI---EERNYI 137
Query: 464 HGSLTPSSILLDRNLVAKISGLGLN--ICDQ------------------------LNVRS 497
           H  L  ++IL+   L  KI+  GL   I D                           ++S
Sbjct: 138 HRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKS 197
Query: 498 DIRAFGTLLLHLLT 511
           D+ +FG LL  ++T
Sbjct: 198 DVWSFGILLTEIVT 211

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 41/197 (20%)
Query: 347 AGDWTNVYRGRLN-HASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCS-ELK 403
           AG +  V+ G  N H  VA+K+L  G +S + F A+ + +  ++H  LV +    + E  
Sbjct: 29  AGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPI 88
Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
            I+ EYM NG+L D L T        ++         + +A ++  G++F+   E R  +
Sbjct: 89  YIITEYMENGSLVDFLKTPSGIKLTINKL--------LDMAAQIAEGMAFI---EERNYI 137
Query: 464 HGSLTPSSILLDRNLVAKISGLGLN--ICDQ------------------------LNVRS 497
           H  L  ++IL+   L  KI+  GL   I D                           ++S
Sbjct: 138 HRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKS 197
Query: 498 DIRAFGTLLLHLLT-GR 513
           D+ +FG LL  ++T GR
Sbjct: 198 DVWSFGILLTEIVTHGR 214

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 86/194 (44%), Gaps = 40/194 (20%)
Query: 347 AGDWTNVYRGRLN-HASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCS-ELK 403
           AG +  V+ G  N H  VA+K+L  G +S + F A+ + +  ++H  LV +    + E  
Sbjct: 31  AGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPI 90
Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
            I+ EYM NG+L D L T        ++         + +A ++  G++F+   E R  +
Sbjct: 91  YIITEYMENGSLVDFLKTPSGIKLTINKL--------LDMAAQIAEGMAFI---EERNYI 139
Query: 464 HGSLTPSSILLDRNLVAKISGLGLN--ICDQ------------------------LNVRS 497
           H  L  ++IL+   L  KI+  GL   I D                           ++S
Sbjct: 140 HRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKS 199
Query: 498 DIRAFGTLLLHLLT 511
           D+ +FG LL  ++T
Sbjct: 200 DVWSFGILLTEIVT 213

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 86/194 (44%), Gaps = 40/194 (20%)
Query: 347 AGDWTNVYRGRLN-HASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCS-ELK 403
           AG +  V+ G  N H  VA+K+L  G +S + F A+ + +  ++H  LV +    + E  
Sbjct: 24  AGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPI 83
Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
            I+ EYM NG+L D L T        ++         + +A ++  G++F+   E R  +
Sbjct: 84  YIITEYMENGSLVDFLKTPSGIKLTINKL--------LDMAAQIAEGMAFI---EERNYI 132
Query: 464 HGSLTPSSILLDRNLVAKISGLGLN--ICDQ------------------------LNVRS 497
           H  L  ++IL+   L  KI+  GL   I D                           ++S
Sbjct: 133 HRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKS 192
Query: 498 DIRAFGTLLLHLLT 511
           D+ +FG LL  ++T
Sbjct: 193 DVWSFGILLTEIVT 206

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 86/194 (44%), Gaps = 40/194 (20%)
Query: 347 AGDWTNVYRGRLN-HASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCS-ELK 403
           AG +  V+ G  N H  VA+K+L  G +S + F A+ + +  ++H  LV +    + E  
Sbjct: 23  AGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPI 82
Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
            I+ EYM NG+L D L T        ++         + +A ++  G++F+   E R  +
Sbjct: 83  YIITEYMENGSLVDFLKTPSGIKLTINKL--------LDMAAQIAEGMAFI---EERNYI 131
Query: 464 HGSLTPSSILLDRNLVAKISGLGLN--ICDQ------------------------LNVRS 497
           H  L  ++IL+   L  KI+  GL   I D                           ++S
Sbjct: 132 HRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKS 191
Query: 498 DIRAFGTLLLHLLT 511
           D+ +FG LL  ++T
Sbjct: 192 DVWSFGILLTEIVT 205

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 86/194 (44%), Gaps = 40/194 (20%)
Query: 347 AGDWTNVYRGRLN-HASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCS-ELK 403
           AG +  V+ G  N H  VA+K+L  G +S + F A+ + +  ++H  LV +    + E  
Sbjct: 23  AGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPI 82
Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
            I+ EYM NG+L D L T        ++         + +A ++  G++F+   E R  +
Sbjct: 83  YIITEYMENGSLVDFLKTPSGIKLTINKL--------LDMAAQIAEGMAFI---EERNYI 131
Query: 464 HGSLTPSSILLDRNLVAKISGLGLN--ICDQ------------------------LNVRS 497
           H  L  ++IL+   L  KI+  GL   I D                           ++S
Sbjct: 132 HRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKS 191
Query: 498 DIRAFGTLLLHLLT 511
           D+ +FG LL  ++T
Sbjct: 192 DVWSFGILLTEIVT 205

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 86/194 (44%), Gaps = 40/194 (20%)
Query: 347 AGDWTNVYRGRLN-HASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCS-ELK 403
           AG +  V+ G  N H  VA+K+L  G +S + F A+ + +  ++H  LV +    + E  
Sbjct: 33  AGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPI 92
Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
            I+ EYM NG+L D L T        ++         + +A ++  G++F+   E R  +
Sbjct: 93  YIITEYMENGSLVDFLKTPSGIKLTINKL--------LDMAAQIAEGMAFI---EERNYI 141
Query: 464 HGSLTPSSILLDRNLVAKISGLGLN--ICDQ------------------------LNVRS 497
           H  L  ++IL+   L  KI+  GL   I D                           ++S
Sbjct: 142 HRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKS 201
Query: 498 DIRAFGTLLLHLLT 511
           D+ +FG LL  ++T
Sbjct: 202 DVWSFGILLTEIVT 215

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 86/194 (44%), Gaps = 40/194 (20%)
Query: 347 AGDWTNVYRGRLN-HASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCS-ELK 403
           AG +  V+ G  N H  VA+K+L  G +S + F A+ + +  ++H  LV +    + E  
Sbjct: 32  AGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPI 91
Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
            I+ EYM NG+L D L T        ++         + +A ++  G++F+   E R  +
Sbjct: 92  YIITEYMENGSLVDFLKTPSGIKLTINKL--------LDMAAQIAEGMAFI---EERNYI 140
Query: 464 HGSLTPSSILLDRNLVAKISGLGLN--ICDQ------------------------LNVRS 497
           H  L  ++IL+   L  KI+  GL   I D                           ++S
Sbjct: 141 HRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKS 200
Query: 498 DIRAFGTLLLHLLT 511
           D+ +FG LL  ++T
Sbjct: 201 DVWSFGILLTEIVT 214

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 86/194 (44%), Gaps = 40/194 (20%)
Query: 347 AGDWTNVYRGRLN-HASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCS-ELK 403
           AG +  V+ G  N H  VA+K+L  G +S + F A+ + +  ++H  LV +    + E  
Sbjct: 25  AGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPI 84
Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
            I+ EYM NG+L D L T        ++         + +A ++  G++F+   E R  +
Sbjct: 85  YIITEYMENGSLVDFLKTPSGIKLTINKL--------LDMAAQIAEGMAFI---EERNYI 133
Query: 464 HGSLTPSSILLDRNLVAKISGLGLN--ICDQ------------------------LNVRS 497
           H  L  ++IL+   L  KI+  GL   I D                           ++S
Sbjct: 134 HRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKS 193
Query: 498 DIRAFGTLLLHLLT 511
           D+ +FG LL  ++T
Sbjct: 194 DVWSFGILLTEIVT 207

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 86/194 (44%), Gaps = 40/194 (20%)
Query: 347 AGDWTNVYRGRLN-HASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCS-ELK 403
           AG +  V+ G  N H  VA+K+L  G +S + F A+ + +  ++H  LV +    + E  
Sbjct: 23  AGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPI 82
Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
            I+ EYM NG+L D L T        ++         + +A ++  G++F+   E R  +
Sbjct: 83  YIITEYMENGSLVDFLKTPSGIKLTINKL--------LDMAAQIAEGMAFI---EERNYI 131
Query: 464 HGSLTPSSILLDRNLVAKISGLGLN--ICDQ------------------------LNVRS 497
           H  L  ++IL+   L  KI+  GL   I D                           ++S
Sbjct: 132 HRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKS 191
Query: 498 DIRAFGTLLLHLLT 511
           D+ +FG LL  ++T
Sbjct: 192 DVWSFGILLTEIVT 205

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 91/213 (42%), Gaps = 43/213 (20%)
Query: 328 AEDIRLATEDFSERFRLKCAGD-WTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSFLT 385
           A ++   T    ER     AG+ W   Y G   H  VA+K+L  G +S + F A+ + + 
Sbjct: 7   AWEVPRETLKLVERLGAGQAGEVWMGYYNG---HTKVAVKSLKQGSMSPDAFLAEANLMK 63
Query: 386 AVRHPHLVAVMGCCS-ELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIA 444
            ++H  LV +    + E   I+ EYM NG+L D L T        ++         + +A
Sbjct: 64  QLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKL--------LDMA 115
Query: 445 HEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN--ICD----------- 491
            ++  G++F+   E R  +H  L  ++IL+   L  KI+  GL   I D           
Sbjct: 116 AQIAEGMAFI---EERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDAEXTAREGAKF 172
Query: 492 -------------QLNVRSDIRAFGTLLLHLLT 511
                           ++SD+ +FG LL  ++T
Sbjct: 173 PIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 205

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 86/194 (44%), Gaps = 40/194 (20%)
Query: 347 AGDWTNVYRGRLN-HASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCS-ELK 403
           AG +  V+ G  N H  VA+K+L  G +S + F A+ + +  ++H  LV +    + E  
Sbjct: 18  AGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPI 77
Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
            I+ EYM NG+L D L T        ++         + +A ++  G++F+   E R  +
Sbjct: 78  YIITEYMENGSLVDFLKTPSGIKLTINKL--------LDMAAQIAEGMAFI---EERNYI 126
Query: 464 HGSLTPSSILLDRNLVAKISGLGLN--ICDQ------------------------LNVRS 497
           H  L  ++IL+   L  KI+  GL   I D                           ++S
Sbjct: 127 HRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKS 186
Query: 498 DIRAFGTLLLHLLT 511
           D+ +FG LL  ++T
Sbjct: 187 DVWSFGILLTEIVT 200

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 40/194 (20%)
Query: 347 AGDWTNVYRGRLN-HASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCS-ELK 403
           AG +  V+ G  N H  VA+K+L  G +S + F A+ + +  ++H  LV +    + E  
Sbjct: 19  AGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPI 78
Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
            I+ EYM NG+L D L T        ++         + +A ++  G++F+   E R  +
Sbjct: 79  YIITEYMENGSLVDFLKTPSGIKLTINKL--------LDMAAQIAEGMAFI---EERNYI 127
Query: 464 HGSLTPSSILLDRNLVAKISGLGLN--ICDQ------------------------LNVRS 497
           H +L  ++IL+   L  KI+  GL   I D                           ++S
Sbjct: 128 HRNLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKS 187
Query: 498 DIRAFGTLLLHLLT 511
           D+ +FG LL  ++T
Sbjct: 188 DVWSFGILLTEIVT 201

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 68/156 (43%), Gaps = 22/156 (14%)
Query: 343 RLKCAGDWTNVYRGRLN-----HASVAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVA 394
           ++  +GD   V  GRL         VAIK L  G +E    DF ++ S +    HP+++ 
Sbjct: 55  KIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIR 114
Query: 395 VMGCCSE--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLS 452
           + G  +   L  IV EYM NG+L   L T    +        LR          V  G+ 
Sbjct: 115 LEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLR---------GVGAGMR 165
Query: 453 FLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
           +L        VH  L   ++L+D NLV K+S  GL+
Sbjct: 166 YLSDLG---YVHRDLAARNVLVDSNLVCKVSDFGLS 198

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 68/156 (43%), Gaps = 22/156 (14%)
Query: 343 RLKCAGDWTNVYRGRLN-----HASVAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVA 394
           ++  +GD   V  GRL         VAIK L  G +E    DF ++ S +    HP+++ 
Sbjct: 55  KIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIR 114
Query: 395 VMGCCSE--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLS 452
           + G  +   L  IV EYM NG+L   L T    +        LR          V  G+ 
Sbjct: 115 LEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLR---------GVGAGMR 165
Query: 453 FLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
           +L        VH  L   ++L+D NLV K+S  GL+
Sbjct: 166 YLSDLG---YVHRDLAARNVLVDSNLVCKVSDFGLS 198

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 30/181 (16%)
Query: 326 YAAEDIRLATEDFSERFRLKC--------AGDWTNVYRGRLNHAS-----VAIKTLNNGL 372
           +  ED   A  +F++   + C        AG++  V  G L         VAIKTL +G 
Sbjct: 14  FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY 73
Query: 373 SEE---DFQAKVSFLTAVRHPHLVAVMGCC--SELKCIVFEYMPNGNLRDKLFTSQRNYK 427
           +E+   DF ++ S +    HP+++ + G    S    I+ E+M NG+L   L  +   + 
Sbjct: 74  TEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFT 133
Query: 428 NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
                  LR          +  G+ +L        VH  L   +IL++ NLV K+S  GL
Sbjct: 134 VIQLVGMLR---------GIAAGMKYLADMN---YVHRDLAARNILVNSNLVCKVSDFGL 181
Query: 488 N 488
           +
Sbjct: 182 S 182

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 74/178 (41%), Gaps = 30/178 (16%)
Query: 329 EDIRLATEDFSERFRLKC--------AGDWTNVYRGRLN-----HASVAIKTLNNGLSEE 375
           ED   A   F++     C        AG++  V  GRL        +VAIKTL  G +E+
Sbjct: 27  EDPNRAVHQFAKELDASCIKIERVIGAGEFGEVCSGRLKLPGKRDVAVAIKTLKVGYTEK 86
Query: 376 ---DFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCS 430
              DF  + S +    HP++V + G  +  K   IV E+M NG L   L      +    
Sbjct: 87  QRRDFLCEASIMGQFDHPNVVHLEGVVTRGKPVMIVIEFMENGALDAFLRKHDGQFTVIQ 146
Query: 431 RARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
               LR          +  G+ +L        VH  L   +IL++ NLV K+S  GL+
Sbjct: 147 LVGMLR---------GIAAGMRYLADMG---YVHRDLAARNILVNSNLVCKVSDFGLS 192

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 30/181 (16%)
Query: 326 YAAEDIRLATEDFSERFRLKC--------AGDWTNVYRGRLN-----HASVAIKTLNNGL 372
           +  ED   A  +F++     C         G++  V  GRL         VAIKTL  G 
Sbjct: 10  FTFEDPNQAVREFAKEIDASCIKIEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGY 69
Query: 373 SEE---DFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYK 427
           +++   DF ++ S +    HP+++ + G  ++ K   I+ EYM NG+L   L       K
Sbjct: 70  TDKQRRDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFL------RK 123
Query: 428 NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
           N  R   ++    + +   +  G+ +L        VH  L   +IL++ NLV K+S  G+
Sbjct: 124 NDGRFTVIQL---VGMLRGIGSGMKYLSDMS---AVHRDLAARNILVNSNLVCKVSDFGM 177
Query: 488 N 488
           +
Sbjct: 178 S 178

>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 117/277 (42%), Gaps = 61/277 (22%)
Query: 355 RGRLNHASVAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEY 409
           +GR  + +VA+K L    S     D  ++ + L  V HPH++ + G CS+     ++ EY
Sbjct: 48  KGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEY 107
Query: 410 MPNGNLRDKLFTSQR---NYKNCSRA-----------RALRWLDRIHIAHEVCLGLSFLH 455
              G+LR  L  S++    Y     +           RAL   D I  A ++  G+ +L 
Sbjct: 108 AKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLA 167
Query: 456 STEPRPIVHGSLTPSSILLDRNLVAKISGLGL--------------------------NI 489
             +   +VH  L   +IL+      KIS  GL                          ++
Sbjct: 168 EMK---LVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSXVKRSQGRIPVKWMAIESL 224
Query: 490 CDQL-NVRSDIRAFGTLLLHLLT--GRNWAGL-VEKAMALDQTTLMQVLDGNAGIWPLDL 545
            D +   +SD+ +FG LL  ++T  G  + G+  E+   L +T       G+    P + 
Sbjct: 225 FDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKT-------GHRMERPDNC 277
Query: 546 AEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK 582
           +EE+  + L+C    Q+ ++    A + K+L+++  K
Sbjct: 278 SEEMYRLMLQCWK--QEPDKRPVFADISKDLEKMMVK 312

>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 117/277 (42%), Gaps = 61/277 (22%)
Query: 355 RGRLNHASVAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEY 409
           +GR  + +VA+K L    S     D  ++ + L  V HPH++ + G CS+     ++ EY
Sbjct: 48  KGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEY 107
Query: 410 MPNGNLRDKLFTSQR--------------NYKNCSRARALRWLDRIHIAHEVCLGLSFLH 455
              G+LR  L  S++              +  +    RAL   D I  A ++  G+ +L 
Sbjct: 108 AKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLA 167
Query: 456 STEPRPIVHGSLTPSSILLDRNLVAKISGLGL--------------------------NI 489
             +   +VH  L   +IL+      KIS  GL                          ++
Sbjct: 168 EMK---LVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESL 224
Query: 490 CDQL-NVRSDIRAFGTLLLHLLT--GRNWAGL-VEKAMALDQTTLMQVLDGNAGIWPLDL 545
            D +   +SD+ +FG LL  ++T  G  + G+  E+   L +T       G+    P + 
Sbjct: 225 FDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKT-------GHRMERPDNC 277
Query: 546 AEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK 582
           +EE+  + L+C    Q+ ++    A + K+L+++  K
Sbjct: 278 SEEMYRLMLQCWK--QEPDKRPVFADISKDLEKMMVK 312

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 20/138 (14%)
Query: 363 VAIKTLNNGL--SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLR-- 416
           VA+KTL +    + +DF  +   LT ++H H+V   G C E     +VFEYM +G+L   
Sbjct: 46  VAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKF 105
Query: 417 ------DKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPS 470
                 D +  ++ N         L     +HIA ++  G+ +L S      VH  L   
Sbjct: 106 LRAHGPDAVLMAEGN-----PPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATR 157
Query: 471 SILLDRNLVAKISGLGLN 488
           + L+  NL+ KI   G++
Sbjct: 158 NCLVGENLLVKIGDFGMS 175

>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Complexed With The Inhibitor Pp1 Length = 314

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 116/277 (41%), Gaps = 61/277 (22%)
Query: 355 RGRLNHASVAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEY 409
           +GR  + +VA+K L    S     D  ++ + L  V HPH++ + G CS+     ++ EY
Sbjct: 48  KGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEY 107
Query: 410 MPNGNLRDKLFTSQR---NYKNCSRA-----------RALRWLDRIHIAHEVCLGLSFLH 455
              G+LR  L  S++    Y     +           RAL   D I  A ++  G+ +L 
Sbjct: 108 AKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLA 167
Query: 456 STEPRPIVHGSLTPSSILLDRNLVAKISGLGL--------------------------NI 489
                 +VH  L   +IL+      KIS  GL                          ++
Sbjct: 168 EMS---LVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSXVKRSQGRIPVKWMAIESL 224
Query: 490 CDQL-NVRSDIRAFGTLLLHLLT--GRNWAGL-VEKAMALDQTTLMQVLDGNAGIWPLDL 545
            D +   +SD+ +FG LL  ++T  G  + G+  E+   L +T       G+    P + 
Sbjct: 225 FDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKT-------GHRMERPDNC 277
Query: 546 AEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK 582
           +EE+  + L+C    Q+ ++    A + K+L+++  K
Sbjct: 278 SEEMYRLMLQCWK--QEPDKRPVFADISKDLEKMMVK 312

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 22/152 (14%)
Query: 347 AGDWTNVYRGRLN-----HASVAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGC 398
           AG++  V  GRL        SVAIKTL  G +E+   DF  + S +    HP+++ + G 
Sbjct: 26  AGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGV 85
Query: 399 CSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
            ++ K   IV E M NG+L   L      +        LR          +  G+ +L  
Sbjct: 86  VTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLR---------GIASGMKYLSD 136
Query: 457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
                 VH  L   +IL++ NLV K+S  GL+
Sbjct: 137 MG---YVHRDLAARNILINSNLVCKVSDFGLS 165

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 22/152 (14%)
Query: 347 AGDWTNVYRGRLN-----HASVAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGC 398
           AG++  V  GRL        SVAIKTL  G +E+   DF  + S +    HP+++ + G 
Sbjct: 55  AGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGV 114
Query: 399 CSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
            ++ K   IV E M NG+L   L      +        LR          +  G+ +L  
Sbjct: 115 VTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLR---------GIASGMKYLSD 165
Query: 457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
                 VH  L   +IL++ NLV K+S  GL+
Sbjct: 166 MG---YVHRDLAARNILINSNLVCKVSDFGLS 194

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 22/152 (14%)
Query: 347 AGDWTNVYRGRLN-----HASVAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGC 398
           AG++  V  GRL        SVAIKTL  G +E+   DF  + S +    HP+++ + G 
Sbjct: 55  AGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGV 114
Query: 399 CSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
            ++ K   IV E M NG+L   L      +        LR          +  G+ +L  
Sbjct: 115 VTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLR---------GIASGMKYLSD 165
Query: 457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
                 VH  L   +IL++ NLV K+S  GL+
Sbjct: 166 MGA---VHRDLAARNILINSNLVCKVSDFGLS 194

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 79/186 (42%), Gaps = 26/186 (13%)
Query: 309 AIGMVIRSSELSCAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTL 368
           A+ ++ +       F +   + IR   E    +  L C  D TN   G +    VA+K L
Sbjct: 14  ALEVLFQGPGDPTVFHKRYLKKIRDLGEGHFGKVSLYCY-DPTNDGTGEM----VAVKAL 68
Query: 369 NNGLSEE---DFQAKVSFLTAVRHPHLVAVMGCCSELKC----IVFEYMPNGNLRDKLFT 421
                 +    ++ ++  L  + H H++   GCC +       +V EY+P G+LRD L  
Sbjct: 69  KADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYL-- 126
Query: 422 SQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAK 481
                       ++     +  A ++C G+++LH+      +H  L   ++LLD + + K
Sbjct: 127 ---------PRHSIGLAQLLLFAQQICEGMAYLHAQH---YIHRDLAARNVLLDNDRLVK 174
Query: 482 ISGLGL 487
           I   GL
Sbjct: 175 IGDFGL 180

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 322 AFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEE---DFQ 378
            F +   + IR   E    +  L C  D TN   G +    VA+K L      +    ++
Sbjct: 10  VFHKRYLKKIRDLGEGHFGKVSLYCY-DPTNDGTGEM----VAVKALKADCGPQHRSGWK 64
Query: 379 AKVSFLTAVRHPHLVAVMGCCSELK----CIVFEYMPNGNLRDKLFTSQRNYKNCSRARA 434
            ++  L  + H H++   GCC +       +V EY+P G+LRD L              +
Sbjct: 65  QEIDILRTLYHEHIIKYKGCCEDQGEKSLQLVMEYVPLGSLRDYL-----------PRHS 113
Query: 435 LRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
           +     +  A ++C G+++LHS      +H +L   ++LLD + + KI   GL
Sbjct: 114 IGLAQLLLFAQQICEGMAYLHSQH---YIHRNLAARNVLLDNDRLVKIGDFGL 163

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 79/177 (44%), Gaps = 26/177 (14%)
Query: 322 AFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLN-----HASVAIKTLNNGLSEE- 375
           A RE+A E I ++     E   +  AG++  V RGRL       + VAIKTL  G +E  
Sbjct: 5   AVREFAKE-IDVSYVKIEE---VIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQ 60
Query: 376 --DFQAKVSFLTAVRHPHLVAVMGCC--SELKCIVFEYMPNGNLRDKLFTSQRNYKNCSR 431
             +F ++ S +    HP+++ + G    S    I+ E+M NG L   L  +   +     
Sbjct: 61  RREFLSEASIMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTVIQL 120
Query: 432 ARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
              LR          +  G+ +L        VH  L   +IL++ NLV K+S  GL+
Sbjct: 121 VGMLR---------GIASGMRYLAEMS---YVHRDLAARNILVNSNLVCKVSDFGLS 165

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 22/152 (14%)
Query: 347 AGDWTNVYRGRLN-----HASVAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGC 398
            G++  V  GRL         VAIKTL  G +++   DF ++ S +    HP+++ + G 
Sbjct: 24  VGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLEGV 83
Query: 399 CSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
            ++ K   I+ EYM NG+L   L       KN  R   ++    + +   +  G+ +L  
Sbjct: 84  VTKCKPVMIITEYMENGSLDAFL------RKNDGRFTVIQL---VGMLRGIGSGMKYLSD 134
Query: 457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
                 VH  L   +IL++ NLV K+S  G++
Sbjct: 135 MS---YVHRDLAARNILVNSNLVCKVSDFGMS 163

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 22/152 (14%)
Query: 347 AGDWTNVYRGRLN-----HASVAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGC 398
           AG++  V RGRL       + VAIKTL  G +E    +F ++ S +    HP+++ + G 
Sbjct: 24  AGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPNIIRLEGV 83
Query: 399 C--SELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
              S    I+ E+M NG L   L  +   +        LR          +  G+ +L  
Sbjct: 84  VTNSMPVMILTEFMENGALDSFLRLNDGQFTVIQLVGMLR---------GIASGMRYLAE 134
Query: 457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
                 VH  L   +IL++ NLV K+S  GL+
Sbjct: 135 MS---YVHRDLAARNILVNSNLVCKVSDFGLS 163

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 22/152 (14%)
Query: 347 AGDWTNVYRGRLN-----HASVAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGC 398
            G++  V  GRL         VAIKTL  G +++   DF ++ S +    HP+++ + G 
Sbjct: 18  VGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLEGV 77
Query: 399 CSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
            ++ K   I+ EYM NG+L   L       KN  R   ++    + +   +  G+ +L  
Sbjct: 78  VTKCKPVMIITEYMENGSLDAFL------RKNDGRFTVIQ---LVGMLRGIGSGMKYLSD 128
Query: 457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
                 VH  L   +IL++ NLV K+S  G++
Sbjct: 129 MS---YVHRDLAARNILVNSNLVCKVSDFGMS 157

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 15/106 (14%)
Query: 384 LTAVRHPHLVAVMGCCSELKCI--VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRI 441
           L+ V HP ++ + G   + + I  + +Y+  G L   L  SQR     ++          
Sbjct: 60  LSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAK---------- 109
Query: 442 HIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
             A EVCL L +LHS +   I++  L P +ILLD+N   KI+  G 
Sbjct: 110 FYAAEVCLALEYLHSKD---IIYRDLKPENILLDKNGHIKITDFGF 152

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 322 AFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEE---DFQ 378
            F +   + IR   E    +  L C  D TN   G +    VA+K L      +    ++
Sbjct: 10  VFHKRYLKKIRDLGEGHFGKVSLYCY-DPTNDGTGEM----VAVKALKADCGPQHRSGWK 64
Query: 379 AKVSFLTAVRHPHLVAVMGCCSELK----CIVFEYMPNGNLRDKLFTSQRNYKNCSRARA 434
            ++  L  + H H++   GCC +       +V EY+P G+LRD L              +
Sbjct: 65  QEIDILRTLYHEHIIKYKGCCEDQGEKSLQLVMEYVPLGSLRDYL-----------PRHS 113
Query: 435 LRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
           +     +  A ++C G+++LH+      +H +L   ++LLD + + KI   GL
Sbjct: 114 IGLAQLLLFAQQICEGMAYLHAQH---YIHRNLAARNVLLDNDRLVKIGDFGL 163

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 22/152 (14%)
Query: 347 AGDWTNVYRGRLNHAS-----VAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGC 398
           AG++  V  G L         VAIKTL +G +E+   DF ++ S +    HP+++ + G 
Sbjct: 17  AGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGV 76
Query: 399 CSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
            ++     I+ E+M NG+L   L  +   +        LR          +  G+ +L  
Sbjct: 77  VTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLR---------GIAAGMKYLAD 127
Query: 457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
                 VH +L   +IL++ NLV K+S  GL+
Sbjct: 128 MN---YVHRALAARNILVNSNLVCKVSDFGLS 156

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 85/202 (42%), Gaps = 48/202 (23%)
Query: 347 AGDWTNVYRGRLNHASVAIKTLN-NGLSEEDFQA---KVSFLTAVRHPHLVAVMGCCSEL 402
           +G +  VY+G+  H  VA+K LN    + +  QA   +V  L   RH +++  MG  ++ 
Sbjct: 34  SGSFGTVYKGKW-HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKP 92
Query: 403 K-CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
           +  IV ++    +L   L  S+  ++     + L     I IA +   G+ +LH+   + 
Sbjct: 93  QLAIVTQWCEGSSLYHHLHASETKFE----MKKL-----IDIARQTARGMDYLHA---KS 140
Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLNI------------------------------CD 491
           I+H  L  ++I L  +   KI   GL                                 +
Sbjct: 141 IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSN 200
Query: 492 QLNVRSDIRAFGTLLLHLLTGR 513
             + +SD+ AFG +L  L+TG+
Sbjct: 201 PYSFQSDVYAFGIVLYELMTGQ 222

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 363 VAIKTLNNGL--SEEDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLR-- 416
           VA+K L +    + +DFQ +   LT ++H H+V   G C +     +VFEYM +G+L   
Sbjct: 48  VAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKF 107
Query: 417 ------DKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPS 470
                 D +       +       L  +  +HIA ++  G+ +L S      VH  L   
Sbjct: 108 LRAHGPDAMILVDGQPRQAKGELGLSQM--LHIASQIASGMVYLASQH---FVHRDLATR 162
Query: 471 SILLDRNLVAKISGLGLN 488
           + L+  NL+ KI   G++
Sbjct: 163 NCLVGANLLVKIGDFGMS 180

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 12/135 (8%)
Query: 363 VAIKTLNNGL--SEEDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDK 418
           VA+K L      + +DFQ +   LT ++H H+V   G C+E +   +VFEYM +G+L   
Sbjct: 74  VAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRF 133
Query: 419 LFTSQRNYKNCSRAR-----ALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSIL 473
           L +   + K  +         L     + +A +V  G+ +L        VH  L   + L
Sbjct: 134 LRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCL 190
Query: 474 LDRNLVAKISGLGLN 488
           + + LV KI   G++
Sbjct: 191 VGQGLVVKIGDFGMS 205

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 48/184 (26%)
Query: 363 VAIKTLNNGLSEE--DFQAKVSFLTAVRHPHLVAVMGCCSE-----LKCIVFEYMPNGNL 415
           VA+K L +   E   DF+ ++  L +++H ++V   G C       LK I+ EY+P G+L
Sbjct: 73  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM-EYLPYGSL 131
Query: 416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD 475
           RD L   Q++ +     + L++        ++C G+ +L +   +  +H  L   +IL++
Sbjct: 132 RDYL---QKHKERIDHIKLLQY------TSQICKGMEYLGT---KRYIHRDLATRNILVE 179
Query: 476 RNLVAKISGLGLNIC----------------------------DQLNVRSDIRAFGTLLL 507
                KI   GL                                + +V SD+ +FG +L 
Sbjct: 180 NENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLY 239
Query: 508 HLLT 511
            L T
Sbjct: 240 ELFT 243

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 48/184 (26%)
Query: 363 VAIKTLNNGLSEE--DFQAKVSFLTAVRHPHLVAVMGCCS-----ELKCIVFEYMPNGNL 415
           VA+K L +   E   DF+ ++  L +++H ++V   G C       LK I+ EY+P G+L
Sbjct: 43  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM-EYLPYGSL 101
Query: 416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD 475
           RD L   Q++ +     + L++        ++C G+ +L +   +  +H +L   +IL++
Sbjct: 102 RDYL---QKHKERIDHIKLLQY------TSQICKGMEYLGT---KRYIHRNLATRNILVE 149
Query: 476 RNLVAKISGLGLNIC----------------------------DQLNVRSDIRAFGTLLL 507
                KI   GL                                + +V SD+ +FG +L 
Sbjct: 150 NENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLY 209
Query: 508 HLLT 511
            L T
Sbjct: 210 ELFT 213

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 48/202 (23%)
Query: 347 AGDWTNVYRGRLNHASVAIKTLN-NGLSEEDFQA---KVSFLTAVRHPHLVAVMGCCSEL 402
           +G +  VY+G+  H  VA+K LN    + +  QA   +V  L   RH +++  MG  ++ 
Sbjct: 22  SGSFGTVYKGKW-HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKP 80
Query: 403 K-CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
           +  IV ++    +L   L  S+  ++     + L     I IA +   G+ +LH+   + 
Sbjct: 81  QLAIVTQWCEGSSLYHHLHASETKFE----MKKL-----IDIARQTARGMDYLHA---KS 128
Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLNIC----------DQLN----------------- 494
           I+H  L  ++I L  +   KI   GL             +QL+                 
Sbjct: 129 IIHRDLKSNNIFLHEDNTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDSN 188
Query: 495 ---VRSDIRAFGTLLLHLLTGR 513
               +SD+ AFG +L  L+TG+
Sbjct: 189 PYSFQSDVYAFGIVLYELMTGQ 210

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 48/184 (26%)
Query: 363 VAIKTLNNGLSEE--DFQAKVSFLTAVRHPHLVAVMGCCS-----ELKCIVFEYMPNGNL 415
           VA+K L +   E   DF+ ++  L +++H ++V   G C       LK I+ EY+P G+L
Sbjct: 45  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM-EYLPYGSL 103
Query: 416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD 475
           RD L   Q++ +     + L++        ++C G+ +L +   +  +H  L   +IL++
Sbjct: 104 RDYL---QKHKERIDHIKLLQY------TSQICKGMEYLGT---KRYIHRDLATRNILVE 151
Query: 476 RNLVAKISGLGLNIC----------------------------DQLNVRSDIRAFGTLLL 507
                KI   GL                                + +V SD+ +FG +L 
Sbjct: 152 NENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLY 211
Query: 508 HLLT 511
            L T
Sbjct: 212 ELFT 215

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 48/184 (26%)
Query: 363 VAIKTLNNGLSEE--DFQAKVSFLTAVRHPHLVAVMGCCS-----ELKCIVFEYMPNGNL 415
           VA+K L +   E   DF+ ++  L +++H ++V   G C       LK I+ EY+P G+L
Sbjct: 49  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM-EYLPYGSL 107
Query: 416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD 475
           RD L   Q++ +     + L++        ++C G+ +L +   +  +H  L   +IL++
Sbjct: 108 RDYL---QKHKERIDHIKLLQY------TSQICKGMEYLGT---KRYIHRDLATRNILVE 155
Query: 476 RNLVAKISGLGLNIC----------------------------DQLNVRSDIRAFGTLLL 507
                KI   GL                                + +V SD+ +FG +L 
Sbjct: 156 NENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLY 215
Query: 508 HLLT 511
            L T
Sbjct: 216 ELFT 219

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 12/135 (8%)
Query: 363 VAIKTLNNGL--SEEDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDK 418
           VA+K L      + +DFQ +   LT ++H H+V   G C+E +   +VFEYM +G+L   
Sbjct: 51  VAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRF 110
Query: 419 LFTSQRNYKNCSRAR-----ALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSIL 473
           L +   + K  +         L     + +A +V  G+ +L        VH  L   + L
Sbjct: 111 LRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCL 167
Query: 474 LDRNLVAKISGLGLN 488
           + + LV KI   G++
Sbjct: 168 VGQGLVVKIGDFGMS 182

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 12/135 (8%)
Query: 363 VAIKTLNNGL--SEEDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDK 418
           VA+K L      + +DFQ +   LT ++H H+V   G C+E +   +VFEYM +G+L   
Sbjct: 45  VAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRF 104
Query: 419 LFTSQRNYKNCSRAR-----ALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSIL 473
           L +   + K  +         L     + +A +V  G+ +L        VH  L   + L
Sbjct: 105 LRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCL 161
Query: 474 LDRNLVAKISGLGLN 488
           + + LV KI   G++
Sbjct: 162 VGQGLVVKIGDFGMS 176

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 48/184 (26%)
Query: 363 VAIKTLNNGLSEE--DFQAKVSFLTAVRHPHLVAVMGCCSE-----LKCIVFEYMPNGNL 415
           VA+K L +   E   DF+ ++  L +++H ++V   G C       LK I+ EY+P G+L
Sbjct: 47  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM-EYLPYGSL 105
Query: 416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD 475
           RD L   Q++ +     + L++        ++C G+ +L +   +  +H  L   +IL++
Sbjct: 106 RDYL---QKHKERIDHIKLLQY------TSQICKGMEYLGT---KRYIHRDLATRNILVE 153
Query: 476 RNLVAKISGLGLNIC----------------------------DQLNVRSDIRAFGTLLL 507
                KI   GL                                + +V SD+ +FG +L 
Sbjct: 154 NENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLY 213
Query: 508 HLLT 511
            L T
Sbjct: 214 ELFT 217

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 19/165 (11%)
Query: 348 GDWTNVYRGRLNHASV----AIKTLNNGLSEED---FQAKVSFLTAV-RHPHLVAVMGCC 399
           G++  V + R+    +    AIK +    S++D   F  ++  L  +  HP+++ ++G C
Sbjct: 36  GNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGAC 95
Query: 400 SE--LKCIVFEYMPNGNLRDKLFTSQRNYKNC------SRARALRWLDRIHIAHEVCLGL 451
                  +  EY P+GNL D L  S+    +       S A  L     +H A +V  G+
Sbjct: 96  EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGM 155
Query: 452 SFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVR 496
            +L   +    +H  L   +IL+  N VAKI+  GL+   ++ V+
Sbjct: 156 DYLSQKQ---FIHRDLAARNILVGENYVAKIADFGLSRGQEVYVK 197

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 19/168 (11%)
Query: 348 GDWTNVYRGRLNHASV----AIKTLNNGLSEED---FQAKVSFLTAV-RHPHLVAVMGCC 399
           G++  V + R+    +    AIK +    S++D   F  ++  L  +  HP+++ ++G C
Sbjct: 33  GNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGAC 92
Query: 400 SE--LKCIVFEYMPNGNLRDKLFTSQRNYKNC------SRARALRWLDRIHIAHEVCLGL 451
                  +  EY P+GNL D L  S+    +       S A  L     +H A +V  G+
Sbjct: 93  EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGM 152
Query: 452 SFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVRSDI 499
            +L   +    +H +L   +IL+  N VAKI+  GL+   ++ V+  +
Sbjct: 153 DYLSQKQ---FIHRNLAARNILVGENYVAKIADFGLSRGQEVYVKKTM 197

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 48/184 (26%)
Query: 363 VAIKTLNNGLSEE--DFQAKVSFLTAVRHPHLVAVMGCCSE-----LKCIVFEYMPNGNL 415
           VA+K L +   E   DF+ ++  L +++H ++V   G C       LK I+ EY+P G+L
Sbjct: 48  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM-EYLPYGSL 106
Query: 416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD 475
           RD L   Q++ +     + L++        ++C G+ +L +   +  +H  L   +IL++
Sbjct: 107 RDYL---QKHKERIDHIKLLQY------TSQICKGMEYLGT---KRYIHRDLATRNILVE 154
Query: 476 RNLVAKISGLGLNIC----------------------------DQLNVRSDIRAFGTLLL 507
                KI   GL                                + +V SD+ +FG +L 
Sbjct: 155 NENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLY 214
Query: 508 HLLT 511
            L T
Sbjct: 215 ELFT 218

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 48/184 (26%)
Query: 363 VAIKTLNNGLSEE--DFQAKVSFLTAVRHPHLVAVMGCCSE-----LKCIVFEYMPNGNL 415
           VA+K L +   E   DF+ ++  L +++H ++V   G C       LK I+ EY+P G+L
Sbjct: 40  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM-EYLPYGSL 98
Query: 416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD 475
           RD L   Q++ +     + L++        ++C G+ +L +   +  +H  L   +IL++
Sbjct: 99  RDYL---QKHKERIDHIKLLQY------TSQICKGMEYLGT---KRYIHRDLATRNILVE 146
Query: 476 RNLVAKISGLGLNIC----------------------------DQLNVRSDIRAFGTLLL 507
                KI   GL                                + +V SD+ +FG +L 
Sbjct: 147 NENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLY 206
Query: 508 HLLT 511
            L T
Sbjct: 207 ELFT 210

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 48/184 (26%)
Query: 363 VAIKTLNNGLSEE--DFQAKVSFLTAVRHPHLVAVMGCCS-----ELKCIVFEYMPNGNL 415
           VA+K L +   E   DF+ ++  L +++H ++V   G C       LK I+ EY+P G+L
Sbjct: 42  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM-EYLPYGSL 100
Query: 416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD 475
           RD L   Q++ +     + L++        ++C G+ +L +   +  +H  L   +IL++
Sbjct: 101 RDYL---QKHKERIDHIKLLQY------TSQICKGMEYLGT---KRYIHRDLATRNILVE 148
Query: 476 RNLVAKISGLGLNIC----------------------------DQLNVRSDIRAFGTLLL 507
                KI   GL                                + +V SD+ +FG +L 
Sbjct: 149 NENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLY 208
Query: 508 HLLT 511
            L T
Sbjct: 209 ELFT 212

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 48/184 (26%)
Query: 363 VAIKTLNNGLSEE--DFQAKVSFLTAVRHPHLVAVMGCCS-----ELKCIVFEYMPNGNL 415
           VA+K L +   E   DF+ ++  L +++H ++V   G C       LK I+ EY+P G+L
Sbjct: 41  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM-EYLPYGSL 99
Query: 416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD 475
           RD L   Q++ +     + L++        ++C G+ +L +   +  +H  L   +IL++
Sbjct: 100 RDYL---QKHKERIDHIKLLQY------TSQICKGMEYLGT---KRYIHRDLATRNILVE 147
Query: 476 RNLVAKISGLGLNIC----------------------------DQLNVRSDIRAFGTLLL 507
                KI   GL                                + +V SD+ +FG +L 
Sbjct: 148 NENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLY 207
Query: 508 HLLT 511
            L T
Sbjct: 208 ELFT 211

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 48/184 (26%)
Query: 363 VAIKTLNNGLSEE--DFQAKVSFLTAVRHPHLVAVMGCCSE-----LKCIVFEYMPNGNL 415
           VA+K L +   E   DF+ ++  L +++H ++V   G C       LK I+ EY+P G+L
Sbjct: 42  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM-EYLPYGSL 100
Query: 416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD 475
           RD L   Q++ +     + L++        ++C G+ +L +   +  +H  L   +IL++
Sbjct: 101 RDYL---QKHKERIDHIKLLQY------TSQICKGMEYLGT---KRYIHRDLATRNILVE 148
Query: 476 RNLVAKISGLGLNIC----------------------------DQLNVRSDIRAFGTLLL 507
                KI   GL                                + +V SD+ +FG +L 
Sbjct: 149 NENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLY 208
Query: 508 HLLT 511
            L T
Sbjct: 209 ELFT 212

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 48/202 (23%)
Query: 347 AGDWTNVYRGRLNHASVAIKTLN-NGLSEEDFQA---KVSFLTAVRHPHLVAVMGCCSEL 402
           +G +  VY+G+  H  VA+K LN    + +  QA   +V  L   RH +++  MG  +  
Sbjct: 34  SGSFGTVYKGKW-HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAP 92
Query: 403 K-CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
           +  IV ++    +L   L  S+  ++     + L     I IA +   G+ +LH+   + 
Sbjct: 93  QLAIVTQWCEGSSLYHHLHASETKFE----MKKL-----IDIARQTARGMDYLHA---KS 140
Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLNI------------------------------CD 491
           I+H  L  ++I L  +   KI   GL                                 +
Sbjct: 141 IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSN 200
Query: 492 QLNVRSDIRAFGTLLLHLLTGR 513
             + +SD+ AFG +L  L+TG+
Sbjct: 201 PYSFQSDVYAFGIVLYELMTGQ 222

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 48/184 (26%)
Query: 363 VAIKTLNNGLSEE--DFQAKVSFLTAVRHPHLVAVMGCCSE-----LKCIVFEYMPNGNL 415
           VA+K L +   E   DF+ ++  L +++H ++V   G C       LK I+ EY+P G+L
Sbjct: 42  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM-EYLPYGSL 100
Query: 416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD 475
           RD L   Q++ +     + L++        ++C G+ +L +   +  +H  L   +IL++
Sbjct: 101 RDYL---QKHKERIDHIKLLQY------TSQICKGMEYLGT---KRYIHRDLATRNILVE 148
Query: 476 RNLVAKISGLGLNIC----------------------------DQLNVRSDIRAFGTLLL 507
                KI   GL                                + +V SD+ +FG +L 
Sbjct: 149 NENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLY 208
Query: 508 HLLT 511
            L T
Sbjct: 209 ELFT 212

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 19/165 (11%)
Query: 348 GDWTNVYRGRLNHASV----AIKTLNNGLSEED---FQAKVSFLTAV-RHPHLVAVMGCC 399
           G++  V + R+    +    AIK +    S++D   F  ++  L  +  HP+++ ++G C
Sbjct: 26  GNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGAC 85
Query: 400 SE--LKCIVFEYMPNGNLRDKLFTSQRNYKNC------SRARALRWLDRIHIAHEVCLGL 451
                  +  EY P+GNL D L  S+    +       S A  L     +H A +V  G+
Sbjct: 86  EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGM 145
Query: 452 SFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVR 496
            +L   +    +H  L   +IL+  N VAKI+  GL+   ++ V+
Sbjct: 146 DYLSQKQ---FIHRDLAARNILVGENYVAKIADFGLSRGQEVYVK 187

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 48/184 (26%)
Query: 363 VAIKTLNNGLSEE--DFQAKVSFLTAVRHPHLVAVMGCCSE-----LKCIVFEYMPNGNL 415
           VA+K L +   E   DF+ ++  L +++H ++V   G C       LK I+ EY+P G+L
Sbjct: 46  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM-EYLPYGSL 104
Query: 416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD 475
           RD L   Q++ +     + L++        ++C G+ +L +   +  +H  L   +IL++
Sbjct: 105 RDYL---QKHKERIDHIKLLQY------TSQICKGMEYLGT---KRYIHRDLATRNILVE 152
Query: 476 RNLVAKISGLGLNIC----------------------------DQLNVRSDIRAFGTLLL 507
                KI   GL                                + +V SD+ +FG +L 
Sbjct: 153 NENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLY 212
Query: 508 HLLT 511
            L T
Sbjct: 213 ELFT 216

>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex (Mgatp) Length = 271

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 17/139 (12%)
Query: 353 VYRGRLNHASVAIKTLN----NGLSEEDFQAKVSFLTAVRHPHLVAVMGCC----SELKC 404
           +++GR     + +K L     +     DF  +   L    HP+++ V+G C    +    
Sbjct: 26  LWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPT 85
Query: 405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVH 464
           ++  +MP G+L + L        + S+A        +  A ++  G++FLH+ EP  I  
Sbjct: 86  LITHWMPYGSLYNVLHEGTNFVVDQSQA--------VKFALDMARGMAFLHTLEPL-IPR 136
Query: 465 GSLTPSSILLDRNLVAKIS 483
            +L   S+++D ++ A+IS
Sbjct: 137 HALNSRSVMIDEDMTARIS 155

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 48/184 (26%)
Query: 363 VAIKTLNNGLSEE--DFQAKVSFLTAVRHPHLVAVMGCCS-----ELKCIVFEYMPNGNL 415
           VA+K L +   E   DF+ ++  L +++H ++V   G C       LK I+ EY+P G+L
Sbjct: 60  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM-EYLPYGSL 118
Query: 416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD 475
           RD L   Q++ +     + L++        ++C G+ +L +   +  +H  L   +IL++
Sbjct: 119 RDYL---QKHKERIDHIKLLQY------TSQICKGMEYLGT---KRYIHRDLATRNILVE 166
Query: 476 RNLVAKISGLGLNIC----------------------------DQLNVRSDIRAFGTLLL 507
                KI   GL                                + +V SD+ +FG +L 
Sbjct: 167 NENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLY 226
Query: 508 HLLT 511
            L T
Sbjct: 227 ELFT 230

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 93/216 (43%), Gaps = 48/216 (22%)
Query: 325 EYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSF 383
           E   +D+    E  + +F +   G W    RG+ +   VAIK +  G +SE++F  +   
Sbjct: 4   EIDPKDLTFLKELGTGQFGVVKYGKW----RGQYD---VAIKMIKEGSMSEDEFIEEAKV 56
Query: 384 LTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRI 441
           +  + H  LV + G C++ +   I+ EYM NG L + L    R  ++  + + L     +
Sbjct: 57  MMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYL----REMRHRFQTQQL-----L 107
Query: 442 HIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN------------- 488
            +  +VC  + +L   E +  +H  L   + L++   V K+S  GL+             
Sbjct: 108 EMCKDVCEAMEYL---ESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVG 164
Query: 489 -------------ICDQLNVRSDIRAFGTLLLHLLT 511
                        +  + + +SDI AFG L+  + +
Sbjct: 165 SKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYS 200

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 48/184 (26%)
Query: 363 VAIKTLNNGLSEE--DFQAKVSFLTAVRHPHLVAVMGCCSE-----LKCIVFEYMPNGNL 415
           VA+K L +   E   DF+ ++  L +++H ++V   G C       LK I+ EY+P G+L
Sbjct: 60  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM-EYLPYGSL 118
Query: 416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD 475
           RD L   Q++ +     + L++        ++C G+ +L +   +  +H  L   +IL++
Sbjct: 119 RDYL---QKHKERIDHIKLLQY------TSQICKGMEYLGT---KRYIHRDLATRNILVE 166
Query: 476 RNLVAKISGLGLNIC----------------------------DQLNVRSDIRAFGTLLL 507
                KI   GL                                + +V SD+ +FG +L 
Sbjct: 167 NENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLY 226
Query: 508 HLLT 511
            L T
Sbjct: 227 ELFT 230

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 93/216 (43%), Gaps = 48/216 (22%)
Query: 325 EYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSF 383
           E   +D+    E  + +F +   G W    RG+ +   VAIK +  G +SE++F  +   
Sbjct: 5   EIDPKDLTFLKELGTGQFGVVKYGKW----RGQYD---VAIKMIKEGSMSEDEFIEEAKV 57
Query: 384 LTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRI 441
           +  + H  LV + G C++ +   I+ EYM NG L + L    R  ++  + + L     +
Sbjct: 58  MMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYL----REMRHRFQTQQL-----L 108
Query: 442 HIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN------------- 488
            +  +VC  + +L   E +  +H  L   + L++   V K+S  GL+             
Sbjct: 109 EMCKDVCEAMEYL---ESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSRG 165
Query: 489 -------------ICDQLNVRSDIRAFGTLLLHLLT 511
                        +  + + +SDI AFG L+  + +
Sbjct: 166 SKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYS 201

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 93/216 (43%), Gaps = 48/216 (22%)
Query: 325 EYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSF 383
           E   +D+    E  + +F +   G W    RG+ +   VAIK +  G +SE++F  +   
Sbjct: 11  EIDPKDLTFLKELGTGQFGVVKYGKW----RGQYD---VAIKMIKEGSMSEDEFIEEAKV 63
Query: 384 LTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRI 441
           +  + H  LV + G C++ +   I+ EYM NG L + L    R  ++  + + L     +
Sbjct: 64  MMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYL----REMRHRFQTQQL-----L 114
Query: 442 HIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN------------- 488
            +  +VC  + +L   E +  +H  L   + L++   V K+S  GL+             
Sbjct: 115 EMCKDVCEAMEYL---ESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVG 171
Query: 489 -------------ICDQLNVRSDIRAFGTLLLHLLT 511
                        +  + + +SDI AFG L+  + +
Sbjct: 172 SKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYS 207

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 93/216 (43%), Gaps = 48/216 (22%)
Query: 325 EYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSF 383
           E   +D+    E  + +F +   G W    RG+ +   VAIK +  G +SE++F  +   
Sbjct: 20  EIDPKDLTFLKELGTGQFGVVKYGKW----RGQYD---VAIKMIKEGSMSEDEFIEEAKV 72
Query: 384 LTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRI 441
           +  + H  LV + G C++ +   I+ EYM NG L + L    R  ++  + + L     +
Sbjct: 73  MMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYL----REMRHRFQTQQL-----L 123
Query: 442 HIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN------------- 488
            +  +VC  + +L S +    +H  L   + L++   V K+S  GL+             
Sbjct: 124 EMCKDVCEAMEYLESKQ---FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEETSSVG 180
Query: 489 -------------ICDQLNVRSDIRAFGTLLLHLLT 511
                        +  + + +SDI AFG L+  + +
Sbjct: 181 SKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYS 216

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 93/216 (43%), Gaps = 48/216 (22%)
Query: 325 EYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSF 383
           E   +D+    E  + +F +   G W    RG+ +   VAIK +  G +SE++F  +   
Sbjct: 5   EIDPKDLTFLKELGTGQFGVVKYGKW----RGQYD---VAIKMIKEGSMSEDEFIEEAKV 57
Query: 384 LTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRI 441
           +  + H  LV + G C++ +   I+ EYM NG L + L    R  ++  + + L     +
Sbjct: 58  MMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYL----REMRHRFQTQQL-----L 108
Query: 442 HIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN------------- 488
            +  +VC  + +L   E +  +H  L   + L++   V K+S  GL+             
Sbjct: 109 EMCKDVCEAMEYL---ESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVG 165
Query: 489 -------------ICDQLNVRSDIRAFGTLLLHLLT 511
                        +  + + +SDI AFG L+  + +
Sbjct: 166 SKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYS 201

>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex With Staurosporine Length = 287

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 14/140 (10%)
Query: 352 NVYRGRLNHASVAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCSELKCIVFE 408
            VYR R     VAIK L  G  +   E+   +   +  + +P++V ++G C     ++  
Sbjct: 29  GVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVM 88
Query: 409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLT 468
            M  G    K    +R     S    L         H+V +G+ +L   E +  VH  L 
Sbjct: 89  EMAGGGPLHKFLVGKREEIPVSNVAEL--------LHQVSMGMKYL---EEKNFVHRDLA 137
Query: 469 PSSILLDRNLVAKISGLGLN 488
             ++LL     AKIS  GL+
Sbjct: 138 ARNVLLVNRHYAKISDFGLS 157

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 92/212 (43%), Gaps = 48/212 (22%)
Query: 329 EDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSFLTAV 387
           +D+    E  + +F +   G W    RG+ +   VAIK +  G +SE++F  +   +  +
Sbjct: 4   KDLTFLKELGTGQFGVVKYGKW----RGQYD---VAIKMIKEGSMSEDEFIEEAKVMMNL 56
Query: 388 RHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAH 445
            H  LV + G C++ +   I+ EYM NG L + L    R  ++  + + L     + +  
Sbjct: 57  SHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYL----REMRHRFQTQQL-----LEMCK 107
Query: 446 EVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN----------------- 488
           +VC  + +L   E +  +H  L   + L++   V K+S  GL+                 
Sbjct: 108 DVCEAMEYL---ESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFP 164
Query: 489 ---------ICDQLNVRSDIRAFGTLLLHLLT 511
                    +  + + +SDI AFG L+  + +
Sbjct: 165 VRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYS 196

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 48/184 (26%)
Query: 363 VAIKTLNNGLSEE--DFQAKVSFLTAVRHPHLVAVMGCCSE-----LKCIVFEYMPNGNL 415
           VA+K L +   E   DF+ ++  L +++H ++V   G C       LK I+ EY+P G+L
Sbjct: 45  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM-EYLPYGSL 103
Query: 416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD 475
           RD L          + A  +  +  +    ++C G+ +L +   +  +H  L   +IL++
Sbjct: 104 RDYL---------QAHAERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVE 151
Query: 476 RNLVAKISGLGLNIC----------------------------DQLNVRSDIRAFGTLLL 507
                KI   GL                                + +V SD+ +FG +L 
Sbjct: 152 NENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLY 211
Query: 508 HLLT 511
            L T
Sbjct: 212 ELFT 215

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 93/216 (43%), Gaps = 48/216 (22%)
Query: 325 EYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSF 383
           E   +D+    E  + +F +   G W    RG+ +   VAIK +  G +SE++F  +   
Sbjct: 20  EIDPKDLTFLKELGTGQFGVVKYGKW----RGQYD---VAIKMIKEGSMSEDEFIEEAKV 72
Query: 384 LTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRI 441
           +  + H  LV + G C++ +   I+ EYM NG L + L    R  ++  + + L     +
Sbjct: 73  MMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYL----REMRHRFQTQQL-----L 123
Query: 442 HIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN------------- 488
            +  +VC  + +L S +    +H  L   + L++   V K+S  GL+             
Sbjct: 124 EMCKDVCEAMEYLESKQ---FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVG 180
Query: 489 -------------ICDQLNVRSDIRAFGTLLLHLLT 511
                        +  + + +SDI AFG L+  + +
Sbjct: 181 SKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYS 216

>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain Length = 308

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 29/183 (15%)
Query: 323 FREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRL-------NHASVAIKTLNN---GL 372
            +E +   +R   E   +RF          VY+G L          +VAIKTL +   G 
Sbjct: 20  LKEISLSAVRFMEELGEDRF--------GKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGP 71
Query: 373 SEEDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCS 430
             E+F+ +      ++HP++V ++G  ++ +   ++F Y  +G+L + L     +    S
Sbjct: 72  LREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGS 131
Query: 431 R------ARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISG 484
                    AL   D +H+  ++  G+ +L S     +VH  L   ++L+   L  KIS 
Sbjct: 132 TDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKLNVKISD 188
Query: 485 LGL 487
           LGL
Sbjct: 189 LGL 191

>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2 Length = 289

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 29/183 (15%)
Query: 323 FREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRL-------NHASVAIKTLNN---GL 372
            +E +   +R   E   +RF          VY+G L          +VAIKTL +   G 
Sbjct: 3   LKEISLSAVRFMEELGEDRF--------GKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGP 54
Query: 373 SEEDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCS 430
             E+F+ +      ++HP++V ++G  ++ +   ++F Y  +G+L + L     +    S
Sbjct: 55  LREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGS 114
Query: 431 R------ARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISG 484
                    AL   D +H+  ++  G+ +L S     +VH  L   ++L+   L  KIS 
Sbjct: 115 TDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKLNVKISD 171
Query: 485 LGL 487
           LGL
Sbjct: 172 LGL 174

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 90/196 (45%), Gaps = 43/196 (21%)
Query: 347 AGDWTNVYRGRLNHAS-VAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCS--EL 402
           AG +  V+ G  N+++ VA+KTL  G +S + F  + + +  ++H  LV +    +  E 
Sbjct: 23  AGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTREEP 82
Query: 403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDR-IHIAHEVCLGLSFLHSTEPRP 461
             I+ EYM  G+L D L       K+    + L  L + I  + ++  G++++   E + 
Sbjct: 83  IYIITEYMAKGSLLDFL-------KSDEGGKVL--LPKLIDFSAQIAEGMAYI---ERKN 130
Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLN--ICDQ------------------------LNV 495
            +H  L  +++L+  +L+ KI+  GL   I D                           +
Sbjct: 131 YIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGCFTI 190
Query: 496 RSDIRAFGTLLLHLLT 511
           +SD+ +FG LL  ++T
Sbjct: 191 KSDVWSFGILLYEIVT 206

>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70 Length = 613

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 14/140 (10%)
Query: 352 NVYRGRLNHASVAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCSELKCIVFE 408
            VYR R     VAIK L  G  +   E+   +   +  + +P++V ++G C     ++  
Sbjct: 355 GVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVM 414
Query: 409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLT 468
            M  G    K    +R     S    L         H+V +G+ +L   E +  VH +L 
Sbjct: 415 EMAGGGPLHKFLVGKREEIPVSNVAEL--------LHQVSMGMKYL---EEKNFVHRNLA 463
Query: 469 PSSILLDRNLVAKISGLGLN 488
             ++LL     AKIS  GL+
Sbjct: 464 ARNVLLVNRHYAKISDFGLS 483

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 48/184 (26%)
Query: 363 VAIKTLNNGLSEE--DFQAKVSFLTAVRHPHLVAVMGCCSE-----LKCIVFEYMPNGNL 415
           VA+K L +   E   DF+ ++  L +++H ++V   G C       LK I+ E++P G+L
Sbjct: 45  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM-EFLPYGSL 103
Query: 416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD 475
           R+ L   Q++ +     + L++        ++C G+ +L +   +  +H  L   +IL++
Sbjct: 104 REYL---QKHKERIDHIKLLQY------TSQICKGMEYLGT---KRYIHRDLATRNILVE 151
Query: 476 RNLVAKISGLGLNIC----------------------------DQLNVRSDIRAFGTLLL 507
                KI   GL                                + +V SD+ +FG +L 
Sbjct: 152 NENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLY 211
Query: 508 HLLT 511
            L T
Sbjct: 212 ELFT 215

>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain Length = 283

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 363 VAIKTLNNG-LSEEDFQAKV----SFLTAVRHPHLVAVMGCCSELKCIVFEYMPNGNLRD 417
           VA+K +N   L++ D Q ++    S+L  +RHPH++ +         I+      GN   
Sbjct: 42  VALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYAGN--- 98
Query: 418 KLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN 477
           +LF         S   A R+  +I  A E C      H  +   IVH  L P ++LLD +
Sbjct: 99  ELFDYIVQRDKMSEQEARRFFQQIISAVEYC------HRHK---IVHRDLKPENLLLDEH 149
Query: 478 LVAKISGLGLN 488
           L  KI+  GL+
Sbjct: 150 LNVKIADFGLS 160

>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast Snf1 Length = 274

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 363 VAIKTLNNG-LSEEDFQAKV----SFLTAVRHPHLVAVMGCCSELKCIVFEYMPNGNLRD 417
           VA+K +N   L++ D Q ++    S+L  +RHPH++ +         I+      GN   
Sbjct: 36  VALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYAGN--- 92
Query: 418 KLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN 477
           +LF         S   A R+  +I  A E C      H  +   IVH  L P ++LLD +
Sbjct: 93  ELFDYIVQRDKMSEQEARRFFQQIISAVEYC------HRHK---IVHRDLKPENLLLDEH 143
Query: 478 LVAKISGLGLN 488
           L  KI+  GL+
Sbjct: 144 LNVKIADFGLS 154

>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast Amp-Activated Protein Kinase Snf1 Length = 275

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 363 VAIKTLNNG-LSEEDFQAKV----SFLTAVRHPHLVAVMGCCSELKCIVFEYMPNGNLRD 417
           VA+K +N   L++ D Q ++    S+L  +RHPH++ +         I+      GN   
Sbjct: 41  VALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYAGN--- 97
Query: 418 KLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN 477
           +LF         S   A R+  +I  A E C      H  +   IVH  L P ++LLD +
Sbjct: 98  ELFDYIVQRDKMSEQEARRFFQQIISAVEYC------HRHK---IVHRDLKPENLLLDEH 148
Query: 478 LVAKISGLGLN 488
           L  KI+  GL+
Sbjct: 149 LNVKIADFGLS 159

>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of The Saccharomyces Cerevisiae Ampk Homolog Snf1 Length = 271

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 363 VAIKTLNNG-LSEEDFQAKV----SFLTAVRHPHLVAVMGCCSELKCIVFEYMPNGNLRD 417
           VA+K +N   L++ D Q ++    S+L  +RHPH++ +         I+      GN   
Sbjct: 32  VALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYAGN--- 88
Query: 418 KLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN 477
           +LF         S   A R+  +I  A E C      H  +   IVH  L P ++LLD +
Sbjct: 89  ELFDYIVQRDKMSEQEARRFFQQIISAVEYC------HRHK---IVHRDLKPENLLLDEH 139
Query: 478 LVAKISGLGLN 488
           L  KI+  GL+
Sbjct: 140 LNVKIADFGLS 150

>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex With A Staurosporine Analogue Length = 290

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 20/134 (14%)
Query: 361 ASVAIKTLNNGLSEE--DFQAKVSFLTAVRHPHLVAVMGCC-----SELKCIVFEYMPNG 413
           A VA+K L +   ++  DFQ ++  L A+    +V   G        EL+ +V EY+P+G
Sbjct: 37  ALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRPELR-LVMEYLPSG 95
Query: 414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSIL 473
            LRD L   QR+      +R L +      + ++C G+ +L S   R  VH  L   +IL
Sbjct: 96  CLRDFL---QRHRARLDASRLLLY------SSQICKGMEYLGS---RRCVHRDLAARNIL 143
Query: 474 LDRNLVAKISGLGL 487
           ++     KI+  GL
Sbjct: 144 VESEAHVKIADFGL 157

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 83/204 (40%), Gaps = 50/204 (24%)
Query: 348 GDWTNVYRGRLNHASVAIKTLNNGLSE------EDFQAKVSFLTAVRHPHLVAVMGCCSE 401
           G +  VYR       VA+K   +   E      E+ + +      ++HP+++A+ G C +
Sbjct: 18  GGFGKVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLK 77
Query: 402 LK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEP 459
               C+V E+   G L +++ + +R   +            ++ A ++  G+++LH    
Sbjct: 78  EPNLCLVMEFARGGPL-NRVLSGKRIPPDI----------LVNWAVQIARGMNYLHDEAI 126
Query: 460 RPIVHGSLTPSSILLDR--------NLVAKISGLGLN----------------------- 488
            PI+H  L  S+IL+ +        N + KI+  GL                        
Sbjct: 127 VPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGAYAWMAPEVI 186
Query: 489 ICDQLNVRSDIRAFGTLLLHLLTG 512
                +  SD+ ++G LL  LLTG
Sbjct: 187 RASMFSKGSDVWSYGVLLWELLTG 210

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 22/167 (13%)
Query: 331 IRLATEDFSERFRLKCAGDWTNVYRG------RLNHASVAIKTLNNGLSEE---DFQAKV 381
           +R+  E   +R ++  +G +  VY+G            VAIK LN     +   +F  + 
Sbjct: 9   LRILKETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEA 68
Query: 382 SFLTAVRHPHLVAVMGCC-SELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDR 440
             + ++ HPHLV ++G C S    +V + MP+G L + +     +  N      L W   
Sbjct: 69  LIMASMDHPHLVRLLGVCLSPTIQLVTQLMPHGCLLEYV---HEHKDNIGSQLLLNWC-- 123
Query: 441 IHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
           + IA     G+ +L   E R +VH  L   ++L+      KI+  GL
Sbjct: 124 VQIAK----GMMYL---EERRLVHRDLAARNVLVKSPNHVKITDFGL 163

>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment Length = 336

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 16/111 (14%)
Query: 380 KVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRW 437
           ++S+L  +RHPH++ +    +      +V EY   G L D +   +R  ++  R    R+
Sbjct: 59  EISYLKLLRHPHIIKLYDVITTPTDIVMVIEYA-GGELFDYIVEKKRMTEDEGR----RF 113
Query: 438 LDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN 488
             +I  A E C      H  +   IVH  L P ++LLD NL  KI+  GL+
Sbjct: 114 FQQIICAIEYC------HRHK---IVHRDLKPENLLLDDNLNVKIADFGLS 155

>pdb|4FVR|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain Mutant V617f (Mg- Atp-Bound Form) Length = 289

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 114/276 (41%), Gaps = 65/276 (23%)
Query: 348 GDWTNVYRG---------RLNHASVAIKTLNNG---LSEEDFQAKVSFLTAVRHPHLVAV 395
           G +T +++G         +L+   V +K L+      SE  F+A  S ++ + H HLV  
Sbjct: 19  GTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEA-ASMMSKLSHKHLVLN 77
Query: 396 MGC--CSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSF 453
            G   C +   +V E++  G+L     T  +  KNC     +  L ++ +A ++   + F
Sbjct: 78  YGVCFCGDENILVQEFVKFGSLD----TYLKKNKNC-----INILWKLEVAKQLAWAMHF 128
Query: 454 LHSTEPRPIVHGSLTPSSILLDRN--------LVAKISGLGLNIC--------------- 490
           L   E   ++HG++   +ILL R            K+S  G++I                
Sbjct: 129 L---EENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDILQERIPWVP 185
Query: 491 -------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPL 543
                    LN+ +D  +FGT L  + +G +     +   ALD    +Q  +    + P 
Sbjct: 186 PECIENPKNLNLATDKWSFGTTLWEICSGGD-----KPLSALDSQRKLQFYEDRHQL-PA 239
Query: 544 DLAEELAGIALKCLSADQDANRDLRIAGVMKELDEV 579
             A ELA +   C+  + D     R   ++++L+ +
Sbjct: 240 PKAAELANLINNCMDYEPDHRPSFR--AIIRDLNSL 273

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 22/167 (13%)
Query: 331 IRLATEDFSERFRLKCAGDWTNVYRG------RLNHASVAIKTLNNGLSEE---DFQAKV 381
           +R+  E   +R ++  +G +  VY+G            VAIK LN     +   +F  + 
Sbjct: 32  LRILKETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEA 91
Query: 382 SFLTAVRHPHLVAVMGCC-SELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDR 440
             + ++ HPHLV ++G C S    +V + MP+G L + +     +  N      L W   
Sbjct: 92  LIMASMDHPHLVRLLGVCLSPTIQLVTQLMPHGCLLEYV---HEHKDNIGSQLLLNWC-- 146
Query: 441 IHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
           + IA     G+ +L   E R +VH  L   ++L+      KI+  GL
Sbjct: 147 VQIAK----GMMYL---EERRLVHRDLAARNVLVKSPNHVKITDFGL 186

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 80/201 (39%), Gaps = 48/201 (23%)
Query: 348 GDWTNVYRGRLNHAS--VAIKTLNN------GLSEEDFQAKVSFLTAVRHPHLVAVMGCC 399
           G +  VYR    H    VAIK ++       G+ +   Q +V     ++HP ++ +    
Sbjct: 22  GSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQR-VQNEVKIHCQLKHPSILELYNYF 80
Query: 400 --SELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHST 457
             S    +V E   NG +        R  KN  R +     +  H  H++  G+ +LHS 
Sbjct: 81  EDSNYVYLVLEMCHNGEM-------NRYLKN--RVKPFSENEARHFMHQIITGMLYLHS- 130
Query: 458 EPRPIVHGSLTPSSILLDRNLVAKISGLGL------------NICDQLN----------- 494
               I+H  LT S++LL RN+  KI+  GL             +C   N           
Sbjct: 131 --HGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRSA 188
Query: 495 --VRSDIRAFGTLLLHLLTGR 513
             + SD+ + G +   LL GR
Sbjct: 189 HGLESDVWSLGCMFYTLLIGR 209

>pdb|4FVP|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain (Apo Form) Length = 289

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 114/276 (41%), Gaps = 65/276 (23%)
Query: 348 GDWTNVYRG---------RLNHASVAIKTLNNG---LSEEDFQAKVSFLTAVRHPHLVAV 395
           G +T +++G         +L+   V +K L+      SE  F+A  S ++ + H HLV  
Sbjct: 19  GTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEA-ASMMSKLSHKHLVLN 77
Query: 396 MG--CCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSF 453
            G   C +   +V E++  G+L     T  +  KNC     +  L ++ +A ++   + F
Sbjct: 78  YGVCVCGDENILVQEFVKFGSLD----TYLKKNKNC-----INILWKLEVAKQLAAAMHF 128
Query: 454 LHSTEPRPIVHGSLTPSSILLDRN--------LVAKISGLGLNIC--------------- 490
           L   E   ++HG++   +ILL R            K+S  G++I                
Sbjct: 129 L---EENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDILQERIPWVP 185
Query: 491 -------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPL 543
                    LN+ +D  +FGT L  + +G +     +   ALD    +Q  +    + P 
Sbjct: 186 PECIENPKNLNLATDKWSFGTTLWEICSGGD-----KPLSALDSQRKLQFYEDRHQL-PA 239
Query: 544 DLAEELAGIALKCLSADQDANRDLRIAGVMKELDEV 579
             A ELA +   C+  + D     R   ++++L+ +
Sbjct: 240 PKAAELANLINNCMDYEPDHRPSFR--AIIRDLNSL 273

>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 82/219 (37%), Gaps = 57/219 (26%)
Query: 338 FSERFRLK---CAGDWTNVYRGR--LNHASVAIKTLNNGLSEED-----FQAKVSFLTAV 387
            S+R+ L      G  + V+  R   +H  VA+K L   L+ +      F+ +     A+
Sbjct: 10  LSDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAAL 69
Query: 388 RHPHLVAVMGC------CSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRI 441
            HP +VAV            L  IV EY+    LRD + T        +  RA      I
Sbjct: 70  NHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE----GPMTPKRA------I 119
Query: 442 HIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----------- 490
            +  + C  L+F H      I+H  + P++IL+      K+   G+              
Sbjct: 120 EVIADACQALNFSHQNG---IIHRDVKPANILISATNAVKVVDFGIARAIADSGNSVXQT 176
Query: 491 -----------------DQLNVRSDIRAFGTLLLHLLTG 512
                            D ++ RSD+ + G +L  +LTG
Sbjct: 177 AAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTG 215

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	683
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	4e-38
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	6e-38
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	1e-32
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	2e-32
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	4e-31
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	4e-30
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	7e-29
3soc_A	322	Activin receptor type-2A; structural genomics cons	4e-28
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	2e-27
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	2e-27
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	8e-27
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	1e-26
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	5e-25
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	3e-24
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	8e-24
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	1e-23
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	2e-23
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	3e-23
3q4u_A	301	Activin receptor type-1; structural genomics conso	5e-23
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	7e-23
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	2e-22
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	2e-22
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	7e-22
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	9e-22
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	5e-21
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	2e-20
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	2e-20
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	2e-20
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	4e-20
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	5e-20
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	6e-20
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	7e-20
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	8e-20
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	9e-20
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	1e-19
4aoj_A	329	High affinity nerve growth factor receptor; transf	3e-19
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	4e-19
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	5e-19
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	6e-19
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	7e-19
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	8e-19
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	1e-18
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	1e-18
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	1e-18
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	2e-18
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	2e-18
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	3e-18
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	3e-18
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	4e-18
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	6e-18
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	6e-18
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	1e-17
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	1e-17
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	2e-17
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	2e-17
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	3e-17
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	3e-17
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	3e-17
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	3e-17
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	4e-17
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	4e-17
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	5e-17
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	5e-17
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	6e-17
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	7e-17
3pls_A	298	Macrophage-stimulating protein receptor; protein k	1e-16
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	1e-16
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	1e-16
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	1e-16
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	1e-16
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	2e-16
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	1e-15
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	2e-15
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	2e-15
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	3e-15
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	4e-15
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	2e-14
3uqc_A	286	Probable conserved transmembrane protein; structur	1e-13
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	1e-12
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	1e-12
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	5e-11
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	6e-11
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	7e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	1e-10
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	2e-10
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	2e-10
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	4e-10
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	6e-10
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	7e-10
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	9e-10
2a19_B	284	Interferon-induced, double-stranded RNA-activated	1e-09
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	1e-09
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	5e-09
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	6e-09
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	7e-09
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	9e-09
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	1e-08
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	3e-08
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	3e-08
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	6e-08
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	8e-08
3ork_A	311	Serine/threonine protein kinase; structural genomi	8e-08
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	9e-08
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	9e-08
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	1e-07
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	2e-07
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	2e-07
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	2e-07
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	4e-07
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	5e-07
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	6e-07
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	7e-07
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	7e-07
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	9e-07
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	1e-06
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	2e-06
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	2e-06
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	2e-06
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	2e-06
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	3e-06
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	4e-06
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	4e-06
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	4e-06
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	6e-06
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	8e-06
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	1e-05
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	1e-05
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	1e-05
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	2e-05
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	2e-05
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	3e-05
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	4e-05
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	4e-05
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	5e-05
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	5e-05
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	6e-05
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	7e-05
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	9e-05
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	1e-04
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	1e-04
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	2e-04
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	2e-04
3aln_A	327	Dual specificity mitogen-activated protein kinase;	2e-04
3fme_A	290	Dual specificity mitogen-activated protein kinase;	2e-04
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	2e-04
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	2e-04
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	3e-04
2dyl_A	318	Dual specificity mitogen-activated protein kinase	3e-04
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	3e-04
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	5e-04
3o0g_A	292	Cell division protein kinase 5; kinase activator c	6e-04
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	6e-04
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	6e-04
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	7e-04
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	7e-04
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	7e-04
3an0_A	340	Dual specificity mitogen-activated protein kinase;	8e-04

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  143 bits (362), Expect = 4e-38
 Identities = 75/275 (27%), Positives = 123/275 (44%), Gaps = 53/275 (19%)

Query: 329 EDIRLATEDFSERFRLKCAGDWTNVYRGRL-NHASVAIKTLNNGLS--EEDFQAKVSFLT 385
            D+  AT +F  +F +   G +  VY+G L + A VA+K      S   E+F+ ++  L+
Sbjct: 32  VDLEEATNNFDHKFLIG-HGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLS 90

Query: 386 AVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHI 443
             RHPHLV+++G C E     ++++YM NGNL+  L+ S     +      + W  R+ I
Sbjct: 91  FCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMS------MSWEQRLEI 144

Query: 444 AHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN--------------- 488
                 GL +LH+   R I+H  +   +ILLD N V KI+  G++               
Sbjct: 145 CIGAARGLHYLHT---RAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVV 201

Query: 489 ------------ICDQLNVRSDIRAFGTLLLHLLTGR---------NWAGLVEKAM-ALD 526
                       I  +L  +SD+ +FG +L  +L  R             L E A+ + +
Sbjct: 202 KGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHN 261

Query: 527 QTTLMQVLDGN-AGIWPLDLAEELAGIALKCLSAD 560
              L Q++D N A     +   +    A+KCL+  
Sbjct: 262 NGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALS 296

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  142 bits (360), Expect = 6e-38
 Identities = 65/283 (22%), Positives = 114/283 (40%), Gaps = 64/283 (22%)

Query: 329 EDIRLATEDFSERFRLKCA-----GDWTNVYRGRLNHASVAIKTLNNGLS------EEDF 377
            +++  T +F ER           G +  VY+G +N+ +VA+K L   +       ++ F
Sbjct: 18  YELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQF 77

Query: 378 QAKVSFLTAVRHPHLVAVMGCCSEL--KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARAL 435
             ++  +   +H +LV ++G  S+    C+V+ YMPNG+L D+L               L
Sbjct: 78  DQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCL-------DGTPPL 130

Query: 436 RWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN------- 488
            W  R  IA     G++FLH       +H  +  ++ILLD    AKIS  GL        
Sbjct: 131 SWHMRCKIAQGAANGINFLHE---NHHIHRDIKSANILLDEAFTAKISDFGLARASEKFA 187

Query: 489 -------------------ICDQLNVRSDIRAFGTLLLHLLTGR----------NWAGLV 519
                              +  ++  +SDI +FG +LL ++TG               L+
Sbjct: 188 QTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQL---LL 244

Query: 520 EKAMAL--DQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSAD 560
           +    +  ++ T+   +D           E +  +A +CL   
Sbjct: 245 DIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEK 287

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  127 bits (322), Expect = 1e-32
 Identities = 70/313 (22%), Positives = 133/313 (42%), Gaps = 59/313 (18%)

Query: 324 REYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRL-NHASVAIKTLNNGLS---EEDFQA 379
           + ++  ++++A+++FS +  L   G +  VY+GRL +   VA+K L    +   E  FQ 
Sbjct: 18  KRFSLRELQVASDNFSNKNILGRGG-FGKVYKGRLADGTLVAVKRLKEERTQGGELQFQT 76

Query: 380 KVSFLTAVRHPHLVAVMGCCSEL--KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRW 437
           +V  ++   H +L+ + G C     + +V+ YM NG++   L     +         L W
Sbjct: 77  EVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPP------LDW 130

Query: 438 LDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN--ICD---- 491
             R  IA     GL++LH      I+H  +  ++ILLD    A +   GL   +      
Sbjct: 131 PKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTH 190

Query: 492 --------------------QLNVRSDIRAFGTLLLHLLTGRN-----------WAGLVE 520
                               + + ++D+  +G +LL L+TG+               L++
Sbjct: 191 VTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLD 250

Query: 521 KAMALDQT-TLMQVLDGN-AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDE 578
               L +   L  ++D +  G +  +  E+L  +AL C           +++ V++ L  
Sbjct: 251 WVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCT--QSSPMERPKMSEVVRML-- 306

Query: 579 VRKKADGLADKRE 591
              + DGLA++ E
Sbjct: 307 ---EGDGLAERWE 316

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78

 Score =  118 bits (299), Expect = 2e-32
 Identities = 30/70 (42%), Positives = 42/70 (60%)

Query: 605 SNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPN 664
           S + P  F CPI  E+MK P + + G +YE  ++++WL  GH T P +   L H  LTPN
Sbjct: 2   SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPN 61

Query: 665 HTLRSLIQEW 674
           + L+SLI  W
Sbjct: 62  YVLKSLIALW 71

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score =  122 bits (309), Expect = 4e-31
 Identities = 47/232 (20%), Positives = 92/232 (39%), Gaps = 35/232 (15%)

Query: 353 VYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELKCIVFEYMPN 412
           V + +     VAIK + +    + F  ++  L+ V HP++V + G C    C+V EY   
Sbjct: 24  VCKAKWRAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACLNPVCLVMEYAEG 83

Query: 413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSI 472
           G+L + L                     +    +   G+++LHS +P+ ++H  L P ++
Sbjct: 84  GSLYNVL-------HGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNL 136

Query: 473 LLDRN-LVAKIS--GLGLNICDQL--------------------NVRSDIRAFGTLLLHL 509
           LL     V KI   G   +I   +                    + + D+ ++G +L  +
Sbjct: 137 LLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEV 196

Query: 510 LTGRN-WAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSAD 560
           +T R  +  +   A  +    +  V +G       +L + +  +  +C S D
Sbjct: 197 ITRRKPFDEIGGPAFRI----MWAVHNGTRPPLIKNLPKPIESLMTRCWSKD 244

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179

 Score =  115 bits (290), Expect = 4e-30
 Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 3/131 (2%)

Query: 547 EELAGIALKCLSADQDANRDLRIA-GVMKELDEVRKKADGLADK--RESEVVTDRCANKE 603
            EL     K + A+++   D R+      +      K     DK   + + +  +   K 
Sbjct: 39  NELHAYLSKLILAEKERELDDRVKQSDDSQNGGDISKMKSKHDKYLMDMDELFSQVDEKR 98

Query: 604 DSNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTP 663
              ++P      I  E+M+ P +   G +Y+ + +EE L       P+T   L    L P
Sbjct: 99  KKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIP 158

Query: 664 NHTLRSLIQEW 674
           N  ++ +I  +
Sbjct: 159 NLAMKEVIDAF 169

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score =  115 bits (290), Expect = 7e-29
 Identities = 46/244 (18%), Positives = 93/244 (38%), Gaps = 50/244 (20%)

Query: 353 VYRGRLNHASVAIKTLN----NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK----C 404
           +++GR     + +K L     +     DF  +   L    HP+++ V+G C         
Sbjct: 26  LWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPT 85

Query: 405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVH 464
           ++  +MP G+L + L        +      +     +  A ++  G++FLH+ EP  I  
Sbjct: 86  LITHWMPYGSLYNVL--------HEGTNFVVDQSQAVKFALDMARGMAFLHTLEP-LIPR 136

Query: 465 GSLTPSSILLDRNLVAKIS--GLGLNI---------------------CDQLNVRSDIRA 501
            +L   S+++D ++ A+IS   +  +                       D     +D+ +
Sbjct: 137 HALNSRSVMIDEDMTARISMADVKFSFQSPGRMYAPAWVAPEALQKKPEDTNRRSADMWS 196

Query: 502 FGTLLLHLLTGRN-WAGLVEKAMALDQTTLMQVLDGNA--GIWPLDLAEELAGIALKCLS 558
           F  LL  L+T    +A L    +       M+V        I P  ++  ++ +   C++
Sbjct: 197 FAVLLWELVTREVPFADLSNMEIG------MKVALEGLRPTI-PPGISPHVSKLMKICMN 249

Query: 559 ADQD 562
            D  
Sbjct: 250 EDPA 253

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  114 bits (288), Expect = 4e-28
 Identities = 56/319 (17%), Positives = 106/319 (33%), Gaps = 77/319 (24%)

Query: 329 EDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLN-NGLSEEDFQAKVSFLTAV 387
           E++   +        +K  G +  V++ +L +  VA+K            + +V  L  +
Sbjct: 17  ENLYFQSMPLQL-LEVKARGRFGCVWKAQLLNEYVAVKIFPIQDKQSWQNEYEVYSLPGM 75

Query: 388 RHPHLVAVMGCCSE------LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRI 441
           +H +++  +G             ++  +   G+L D L           +A  + W +  
Sbjct: 76  KHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFL-----------KANVVSWNELC 124

Query: 442 HIAHEVCLGLSFLHSTEPR-------PIVHGSLTPSSILLDRNLVAKISGLGL------- 487
           HIA  +  GL++LH   P         I H  +   ++LL  NL A I+  GL       
Sbjct: 125 HIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAG 184

Query: 488 -------------------------NICDQLNVRSDIRAFGTLLLHLLTGR-NWAGLVEK 521
                                    N      +R D+ A G +L  L +      G V++
Sbjct: 185 KSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDE 244

Query: 522 AMALDQTTL--------MQVLDGNAGI-------WPLDLA-EELAGIALKCLSADQDANR 565
            M   +  +        MQ +  +          W        L     +C   D DA  
Sbjct: 245 YMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECW--DHDAEA 302

Query: 566 DLRIAGVMKELDEVRKKAD 584
            L    V + + ++++  +
Sbjct: 303 RLSAGCVGERITQMQRLTN 321

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score =  112 bits (281), Expect = 2e-27
 Identities = 48/246 (19%), Positives = 92/246 (37%), Gaps = 50/246 (20%)

Query: 353 VYRGRLNHASVAIKTLN----NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK-CIVF 407
           VY+G+  H  VA+K LN         + F+ +V  L   RH +++  MG  +  +  IV 
Sbjct: 40  VYKGKW-HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVT 98

Query: 408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSL 467
           ++    +L   L          +          I IA +   G+ +LH+   + I+H  L
Sbjct: 99  QWCEGSSLYHHLH---------ASETKFEMKKLIDIARQTARGMDYLHA---KSIIHRDL 146

Query: 468 TPSSILLDRNLVAKISGLGL------------------------------NICDQLNVRS 497
             ++I L  +   KI   GL                                 +  + +S
Sbjct: 147 KSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQS 206

Query: 498 DIRAFGTLLLHLLTGRN-WAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKC 556
           D+ AFG +L  L+TG+  ++ +  +   ++       L  +      +  + +  +  +C
Sbjct: 207 DVYAFGIVLYELMTGQLPYSNINNRDQIIEMVG-RGSLSPDLSKVRSNCPKRMKRLMAEC 265

Query: 557 LSADQD 562
           L   +D
Sbjct: 266 LKKKRD 271

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score =  112 bits (282), Expect = 2e-27
 Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 14/141 (9%)

Query: 353 VYRGRLNHASVAIKTLN----NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIV 406
           V+R   + + VA+K L     +     +F  +V+ +  +RHP++V  MG  ++     IV
Sbjct: 53  VHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIV 112

Query: 407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGS 466
            EY+  G+L   L               L    R+ +A++V  G+++LH+  P PIVH +
Sbjct: 113 TEYLSRGSLYRLL-------HKSGAREQLDERRRLSMAYDVAKGMNYLHNRNP-PIVHRN 164

Query: 467 LTPSSILLDRNLVAKISGLGL 487
           L   ++L+D+    K+   GL
Sbjct: 165 LKSPNLLVDKKYTVKVCDFGL 185

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score =  108 bits (272), Expect = 1e-26
 Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 27/151 (17%)

Query: 353 VYRGRLNHASVAIKTLNNGLSE------EDFQAKVSFLTAVRHPHLVAVMGCCSE--LKC 404
           VYR       VA+K   +   E      E+ + +      ++HP+++A+ G C +    C
Sbjct: 23  VYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLC 82

Query: 405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVH 464
           +V E+   G L   L             + +     ++ A ++  G+++LH     PI+H
Sbjct: 83  LVMEFARGGPLNRVL-----------SGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIH 131

Query: 465 GSLTPSSILLDR--------NLVAKISGLGL 487
             L  S+IL+ +        N + KI+  GL
Sbjct: 132 RDLKSSNILILQKVENGDLSNKILKITDFGL 162

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score =  104 bits (262), Expect = 5e-25
 Identities = 54/253 (21%), Positives = 101/253 (39%), Gaps = 58/253 (22%)

Query: 353 VYRGRL--NHASVAIKTLNNGLSE---------EDFQAKVSFLTAVRHPHLVAVMGCCSE 401
           V++GRL  + + VAIK+L  G SE         ++FQ +V  ++ + HP++V + G    
Sbjct: 35  VHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHN 94

Query: 402 LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              +V E++P G+L  +L           +A  ++W  ++ +  ++ LG+ ++ +  P P
Sbjct: 95  PPRMVMEFVPCGDLYHRLL---------DKAHPIKWSVKLRLMLDIALGIEYMQNQNP-P 144

Query: 462 IVHGSLTPSSILLD-----RNLVAKISGLGL------------------------NICDQ 492
           IVH  L   +I L        + AK++  GL                           + 
Sbjct: 145 IVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHSVSGLLGNFQWMAPETIGAEEES 204

Query: 493 LNVRSDIRAFGTLLLHLLTGRN-WAGLVEKAMALDQTTLMQVLDGNA--GIWPLDLAEEL 549
              ++D  +F  +L  +LTG   +       +      +  + +      I P D    L
Sbjct: 205 YTEKADTYSFAMILYTILTGEGPFDEYSYGKIKF----INMIREEGLRPTI-PEDCPPRL 259

Query: 550 AGIALKCLSADQD 562
             +   C S D  
Sbjct: 260 RNVIELCWSGDPK 272

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85

 Score = 95.9 bits (239), Expect = 3e-24
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 1/81 (1%)

Query: 600 ANKEDSNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHK 659
           + + D +D P  F  P+   +M  P     G   +   +   L +   T P     L   
Sbjct: 3   SAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHL-LNSPTDPFNRQMLTES 61

Query: 660 YLTPNHTLRSLIQEWHNKQSS 680
            L P   L+  IQ W  ++ S
Sbjct: 62  MLEPVPELKEQIQAWMREKQS 82

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score =  102 bits (255), Expect = 8e-24
 Identities = 41/178 (23%), Positives = 71/178 (39%), Gaps = 28/178 (15%)

Query: 325 EYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQA--KVS 382
           E AA +  L  ++  +   L   G +  VY+G L+   VA+K  +   + ++F     + 
Sbjct: 2   EAAASEPSLDLDNL-KLLELIGRGRYGAVYKGSLDERPVAVKVFSFA-NRQNFINEKNIY 59

Query: 383 FLTAVRHPHLVAVMGCCSEL-------KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARAL 435
            +  + H ++   +     +         +V EY PNG+L   L                
Sbjct: 60  RVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYL-----------SLHTS 108

Query: 436 RWLDRIHIAHEVCLGLSFLHSTEPR------PIVHGSLTPSSILLDRNLVAKISGLGL 487
            W+    +AH V  GL++LH+  PR       I H  L   ++L+  +    IS  GL
Sbjct: 109 DWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGL 166

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100

 Score = 94.8 bits (236), Expect = 1e-23
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 2/95 (2%)

Query: 586 LADKRESEVVTDRCANKEDSNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMG 645
            A+K E E+V      + D +D P  F  P+   +M  P     G   +   +   L + 
Sbjct: 5   FAEKVE-EIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHL-LN 62

Query: 646 HDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNKQSS 680
             T P     L    L P   L+  IQ W  ++ +
Sbjct: 63  SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQN 97

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score =  100 bits (252), Expect = 2e-23
 Identities = 29/141 (20%), Positives = 54/141 (38%), Gaps = 18/141 (12%)

Query: 353 VYRGRLNHAS--VAIKTLNNGLSE--EDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIV 406
             +         + +K L     E    F  +V  +  + HP+++  +G   + K    +
Sbjct: 26  AIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFI 85

Query: 407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGS 466
            EY+  G LR  +          S      W  R+  A ++  G+++LHS     I+H  
Sbjct: 86  TEYIKGGTLRGII---------KSMDSQYPWSQRVSFAKDIASGMAYLHS---MNIIHRD 133

Query: 467 LTPSSILLDRNLVAKISGLGL 487
           L   + L+  N    ++  GL
Sbjct: 134 LNSHNCLVRENKNVVVADFGL 154

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 99.2 bits (248), Expect = 3e-23
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 14/138 (10%)

Query: 353 VYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK---CIVFEY 409
           V  G      VA+K + N  + + F A+ S +T +RH +LV ++G   E K    IV EY
Sbjct: 37  VMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 96

Query: 410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTP 469
           M  G+L D L +  R          L     +  + +VC  + +L   E    VH  L  
Sbjct: 97  MAKGSLVDYLRSRGR--------SVLGGDCLLKFSLDVCEAMEYL---EGNNFVHRDLAA 145

Query: 470 SSILLDRNLVAKISGLGL 487
            ++L+  + VAK+S  GL
Sbjct: 146 RNVLVSEDNVAKVSDFGL 163

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 99.0 bits (247), Expect = 5e-23
 Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 23/147 (15%)

Query: 353 VYRGRLNHASVAIKTLNNGLSEEDFQ-AKVSFLTAVRHPHLVAVMGCCSELK------CI 405
           V+RG     +VA+K  ++   +  F+  ++     +RH +++  +      +       +
Sbjct: 24  VWRGSWQGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWL 83

Query: 406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPR----- 460
           +  Y   G+L D L           +   L  +  + I   +  GL+ LH          
Sbjct: 84  ITHYHEMGSLYDYL-----------QLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP 132

Query: 461 PIVHGSLTPSSILLDRNLVAKISGLGL 487
            I H  L   +IL+ +N    I+ LGL
Sbjct: 133 AIAHRDLKSKNILVKKNGQCCIADLGL 159

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score =  101 bits (253), Expect = 7e-23
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 14/138 (10%)

Query: 353 VYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK---CIVFEY 409
           V  G      VA+K + N  + + F A+ S +T +RH +LV ++G   E K    IV EY
Sbjct: 209 VMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 268

Query: 410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTP 469
           M  G+L D L +  R          L     +  + +VC  + +L   E    VH  L  
Sbjct: 269 MAKGSLVDYLRSRGR--------SVLGGDCLLKFSLDVCEAMEYL---EGNNFVHRDLAA 317

Query: 470 SSILLDRNLVAKISGLGL 487
            ++L+  + VAK+S  GL
Sbjct: 318 RNVLVSEDNVAKVSDFGL 335

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 97.9 bits (244), Expect = 2e-22
 Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 23/147 (15%)

Query: 353 VYRGRLNHASVAIKTLNNGLSEEDFQ-AKVSFLTAVRHPHLVAVMGCCSELK------CI 405
           V+ G+     VA+K          F+  ++     +RH +++  +    +         +
Sbjct: 53  VWMGKWRGEKVAVKVFFTTEEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYL 112

Query: 406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPR----- 460
           + +Y  NG+L D L           ++  L     + +A+    GL  LH+         
Sbjct: 113 ITDYHENGSLYDYL-----------KSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKP 161

Query: 461 PIVHGSLTPSSILLDRNLVAKISGLGL 487
            I H  L   +IL+ +N    I+ LGL
Sbjct: 162 AIAHRDLKSKNILVKKNGTCCIADLGL 188

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 96.4 bits (240), Expect = 7e-22
 Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 23/147 (15%)

Query: 353 VYRGRLNHASVAIKTLNNGLSEEDFQ-AKVSFLTAVRHPHLVAVMGCCSELK------CI 405
           V+RG+     VA+K  ++      F+ A++     +RH +++  +   ++         +
Sbjct: 58  VWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWL 117

Query: 406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPR----- 460
           V +Y  +G+L D L               +     I +A     GL+ LH          
Sbjct: 118 VSDYHEHGSLFDYL-----------NRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKP 166

Query: 461 PIVHGSLTPSSILLDRNLVAKISGLGL 487
            I H  L   +IL+ +N    I+ LGL
Sbjct: 167 AIAHRDLKSKNILVKKNGTCCIADLGL 193

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 95.9 bits (239), Expect = 9e-22
 Identities = 34/141 (24%), Positives = 53/141 (37%), Gaps = 20/141 (14%)

Query: 353 VYRGRLNHASVAIKTLN----NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIV 406
           VY GR  H  VAI+ ++    N    + F+ +V      RH ++V  MG C       I+
Sbjct: 49  VYHGRW-HGEVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAII 107

Query: 407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGS 466
                   L   +               L       IA E+  G+ +LH+   + I+H  
Sbjct: 108 TSLCKGRTLYSVVR---------DAKIVLDVNKTRQIAQEIVKGMGYLHA---KGILHKD 155

Query: 467 LTPSSILLDRNLVAKISGLGL 487
           L   ++  D   V  I+  GL
Sbjct: 156 LKSKNVFYDNGKV-VITDFGL 175

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 93.5 bits (233), Expect = 5e-21
 Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 15/147 (10%)

Query: 353 VYRGRLNHAS-------VAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGCCSEL 402
           VY G             VAIKT+N   S     +F  + S +      H+V ++G  S+ 
Sbjct: 41  VYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQG 100

Query: 403 K--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPR 460
           +   ++ E M  G+L+  L + +    N            I +A E+  G+++L++    
Sbjct: 101 QPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNA---N 157

Query: 461 PIVHGSLTPSSILLDRNLVAKISGLGL 487
             VH  L   + ++  +   KI   G+
Sbjct: 158 KFVHRDLAARNCMVAEDFTVKIGDFGM 184

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 91.1 bits (227), Expect = 2e-20
 Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 16/140 (11%)

Query: 353 VYRGRLNHAS--VAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVF 407
           VY G     S  VA+KTL    +  E+F  + + +  ++HP+LV ++G C+      I+ 
Sbjct: 29  VYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIT 88

Query: 408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSL 467
           E+M  GNL D L    R        + +  +  +++A ++   + +L   E +  +H  L
Sbjct: 89  EFMTYGNLLDYL----RE----CNRQEVSAVVLLYMATQISSAMEYL---EKKNFIHRDL 137

Query: 468 TPSSILLDRNLVAKISGLGL 487
              + L+  N + K++  GL
Sbjct: 138 AARNCLVGENHLVKVADFGL 157

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98

 Score = 85.2 bits (211), Expect = 2e-20
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 2/80 (2%)

Query: 602 KEDSNDVPSVFICPIFQEVMKTPHVAADG-FSYELEAMEEWLGMGHDTSPMTNLRLKHKY 660
           +E   D    F+ PI   +M  P V      + +   +   L     T P     L    
Sbjct: 13  EETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ-TDPFNRSPLTMDQ 71

Query: 661 LTPNHTLRSLIQEWHNKQSS 680
           + PN  L+  IQ W  ++  
Sbjct: 72  IRPNTELKEKIQRWLAERKQ 91

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 90.3 bits (225), Expect = 2e-20
 Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 16/139 (11%)

Query: 353 VYRGRLN-HASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFE 408
           V  G+      VA+K +  G +SE++F  +   +  + HP LV   G CS+     IV E
Sbjct: 24  VKLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTE 83

Query: 409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLT 468
           Y+ NG L + L    R     S  + L     + + ++VC G++FL   E    +H  L 
Sbjct: 84  YISNGCLLNYL----R-----SHGKGLEPSQLLEMCYDVCEGMAFL---ESHQFIHRDLA 131

Query: 469 PSSILLDRNLVAKISGLGL 487
             + L+DR+L  K+S  G+
Sbjct: 132 ARNCLVDRDLCVKVSDFGM 150

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 90.4 bits (225), Expect = 4e-20
 Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 20/152 (13%)

Query: 353 VYRGRLNHAS-------VAIKTLNNGLSEE--DFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           V+     + S       VA+K L +       DFQ +   LT ++H H+V   G C +  
Sbjct: 31  VFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGD 90

Query: 404 --CIVFEYMPNGNLRDKL------FTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLH 455
              +VFEYM +G+L   L           + +       L     +HIA ++  G+ +L 
Sbjct: 91  PLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYL- 149

Query: 456 STEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
               +  VH  L   + L+  NL+ KI   G+
Sbjct: 150 --ASQHFVHRDLATRNCLVGANLLVKIGDFGM 179

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 89.6 bits (223), Expect = 5e-20
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 16/139 (11%)

Query: 353 VYRGRLN-HASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFE 408
           V  G+      VAIK +  G +SE++F  +   +  + H  LV + G C++ +   I+ E
Sbjct: 40  VKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITE 99

Query: 409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLT 468
           YM NG L + L    R           +    + +  +VC  + +L   E +  +H  L 
Sbjct: 100 YMANGCLLNYL----R-----EMRHRFQTQQLLEMCKDVCEAMEYL---ESKQFLHRDLA 147

Query: 469 PSSILLDRNLVAKISGLGL 487
             + L++   V K+S  GL
Sbjct: 148 ARNCLVNDQGVVKVSDFGL 166

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 92.5 bits (230), Expect = 6e-20
 Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 16/140 (11%)

Query: 353 VYRGRLN--HASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVF 407
           VY G       +VA+KTL    +  E+F  + + +  ++HP+LV ++G C+      I+ 
Sbjct: 236 VYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIT 295

Query: 408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSL 467
           E+M  GNL D L    R        + +  +  +++A ++   + +L     +  +H +L
Sbjct: 296 EFMTYGNLLDYLRECNR--------QEVSAVVLLYMATQISSAMEYLEK---KNFIHRNL 344

Query: 468 TPSSILLDRNLVAKISGLGL 487
              + L+  N + K++  GL
Sbjct: 345 AARNCLVGENHLVKVADFGL 364

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 89.2 bits (222), Expect = 7e-20
 Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 14/138 (10%)

Query: 353 VYRGRLN-HASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCS-ELKCIVFEY 409
           V+ G  N H  VA+K+L  G +S + F A+ + +  ++H  LV +    + E   I+ EY
Sbjct: 29  VWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEY 88

Query: 410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTP 469
           M NG+L D L T             L     + +A ++  G++F+   E R  +H  L  
Sbjct: 89  MENGSLVDFLKTPSG--------IKLTINKLLDMAAQIAEGMAFI---EERNYIHRDLRA 137

Query: 470 SSILLDRNLVAKISGLGL 487
           ++IL+   L  KI+  GL
Sbjct: 138 ANILVSDTLSCKIADFGL 155

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 88.8 bits (221), Expect = 8e-20
 Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 16/139 (11%)

Query: 353 VYRGRLN-HASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFE 408
           V+ G       VAIKT+  G +SEEDF  +   +  + HP LV + G C E    C+V E
Sbjct: 24  VHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTE 83

Query: 409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLT 468
           +M +G L D L    R     ++         + +  +VC G+++L   E   ++H  L 
Sbjct: 84  FMEHGCLSDYL----R-----TQRGLFAAETLLGMCLDVCEGMAYL---EEACVIHRDLA 131

Query: 469 PSSILLDRNLVAKISGLGL 487
             + L+  N V K+S  G+
Sbjct: 132 ARNCLVGENQVIKVSDFGM 150

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 89.7 bits (223), Expect = 9e-20
 Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 27/148 (18%)

Query: 353 VYRGRLN------HASVAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           V     +         VA+K L           ++ ++  L  + H H++   GCC +  
Sbjct: 47  VSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAG 106

Query: 404 ----CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEP 459
                +V EY+P G+LRD L              ++     +  A ++C G+++LH+   
Sbjct: 107 AASLQLVMEYVPLGSLRDYL-----------PRHSIGLAQLLLFAQQICEGMAYLHA--- 152

Query: 460 RPIVHGSLTPSSILLDRNLVAKISGLGL 487
           +  +H  L   ++LLD + + KI   GL
Sbjct: 153 QHYIHRDLAARNVLLDNDRLVKIGDFGL 180

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 90.4 bits (225), Expect = 1e-19
 Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 19/142 (13%)

Query: 353 VYRGRLN--HASVAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGCCSELK--CI 405
           V+ GRL   +  VA+K+    L  +    F  +   L    HP++V ++G C++ +   I
Sbjct: 130 VFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYI 189

Query: 406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHG 465
           V E +  G+    L    R     +    LR    + +  +   G+ +L S   +  +H 
Sbjct: 190 VMELVQGGDFLTFL----R-----TEGARLRVKTLLQMVGDAAAGMEYLES---KCCIHR 237

Query: 466 SLTPSSILLDRNLVAKISGLGL 487
            L   + L+    V KIS  G+
Sbjct: 238 DLAARNCLVTEKNVLKISDFGM 259

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 88.5 bits (220), Expect = 3e-19
 Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 19/151 (12%)

Query: 353 VYRGRLNHAS-------VAIKTLNNGLSEE--DFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           V+    ++         VA+K L         DFQ +   LT ++H H+V   G C+E +
Sbjct: 57  VFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGR 116

Query: 404 --CIVFEYMPNGNLRDKL-----FTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
              +VFEYM +G+L   L                    L     + +A +V  G+ +L  
Sbjct: 117 PLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAG 176

Query: 457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
                 VH  L   + L+ + LV KI   G+
Sbjct: 177 ---LHFVHRDLATRNCLVGQGLVVKIGDFGM 204

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 89.8 bits (223), Expect = 4e-19
 Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 14/138 (10%)

Query: 353 VYRGRLN-HASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCS-ELKCIVFEY 409
           V+    N H  VA+KT+  G +S E F A+ + +  ++H  LV +    + E   I+ E+
Sbjct: 204 VWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEF 263

Query: 410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTP 469
           M  G+L D L + +                 I  + ++  G++F+   E R  +H  L  
Sbjct: 264 MAKGSLLDFLKSDEG--------SKQPLPKLIDFSAQIAEGMAFI---EQRNYIHRDLRA 312

Query: 470 SSILLDRNLVAKISGLGL 487
           ++IL+  +LV KI+  GL
Sbjct: 313 ANILVSASLVCKIADFGL 330

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 87.7 bits (218), Expect = 5e-19
 Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 22/145 (15%)

Query: 353 VYRGRL-----NHASVAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGCCSELK- 403
           V  GRL         VAIK L  G +E    DF ++ S +    HP+++ + G  +  + 
Sbjct: 65  VCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRL 124

Query: 404 -CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             IV EYM NG+L   L    R     +       +  + +   V  G+ +L        
Sbjct: 125 AMIVTEYMENGSLDTFL----R-----THDGQFTIMQLVGMLRGVGAGMRYL---SDLGY 172

Query: 463 VHGSLTPSSILLDRNLVAKISGLGL 487
           VH  L   ++L+D NLV K+S  GL
Sbjct: 173 VHRDLAARNVLVDSNLVCKVSDFGL 197

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 88.2 bits (219), Expect = 6e-19
 Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 22/145 (15%)

Query: 353 VYRGRLNHAS-----VAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGCCSELK- 403
           V  GRL   S     VAIKTL  G +E+   DF  + S +    HP+++ + G  ++ K 
Sbjct: 61  VCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKP 120

Query: 404 -CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             IV EYM NG+L   L                  +  + +   +  G+ +L        
Sbjct: 121 VMIVTEYMENGSLDSFL---------RKHDAQFTVIQLVGMLRGIASGMKYL---SDMGY 168

Query: 463 VHGSLTPSSILLDRNLVAKISGLGL 487
           VH  L   +IL++ NLV K+S  GL
Sbjct: 169 VHRDLAARNILINSNLVCKVSDFGL 193

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 86.5 bits (215), Expect = 7e-19
 Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 21/153 (13%)

Query: 353 VYRGRLNHAS-------VAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCSEL 402
           VY+G L   +       VAIKTL +       E+F+ +      ++HP++V ++G  ++ 
Sbjct: 25  VYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKD 84

Query: 403 K--CIVFEYMPNGNLRDKL------FTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFL 454
           +   ++F Y  +G+L + L              + +   AL   D +H+  ++  G+ +L
Sbjct: 85  QPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYL 144

Query: 455 HSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
            S     +VH  L   ++L+   L  KIS LGL
Sbjct: 145 SS---HHVVHKDLATRNVLVYDKLNVKISDLGL 174

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 87.4 bits (217), Expect = 8e-19
 Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 23/146 (15%)

Query: 353 VYRGRLN------HASVAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           VY+G L          VAIKTL  G +E+   DF  +   +    H +++ + G  S+ K
Sbjct: 60  VYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYK 119

Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              I+ EYM NG L   L    R      +      L  + +   +  G+ +L       
Sbjct: 120 PMMIITEYMENGALDKFL----R-----EKDGEFSVLQLVGMLRGIAAGMKYL---ANMN 167

Query: 462 IVHGSLTPSSILLDRNLVAKISGLGL 487
            VH  L   +IL++ NLV K+S  GL
Sbjct: 168 YVHRDLAARNILVNSNLVCKVSDFGL 193

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 19/151 (12%)

Query: 353 VYRGRLNHAS----VAIKTLNNGLSE---EDFQAKVSFLTAV-RHPHLVAVMGCCSELK- 403
           V + R+         AIK +    S+    DF  ++  L  +  HP+++ ++G C     
Sbjct: 41  VLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGY 100

Query: 404 -CIVFEYMPNGNLRD------KLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
             +  EY P+GNL D       L T        S A  L     +H A +V  G+ +L  
Sbjct: 101 LYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ 160

Query: 457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
              +  +H  L   +IL+  N VAKI+  GL
Sbjct: 161 ---KQFIHRDLAARNILVGENYVAKIADFGL 188

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 88.8 bits (220), Expect = 1e-18
 Identities = 45/138 (32%), Positives = 65/138 (47%), Gaps = 14/138 (10%)

Query: 353 VYRGRLN-HASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSEL-KCIVFEY 409
           V+ G  N    VAIKTL  G +S E F  +   +  +RH  LV +    SE    IV EY
Sbjct: 283 VWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEY 342

Query: 410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTP 469
           M  G+L D L      Y        LR    + +A ++  G++++   E    VH  L  
Sbjct: 343 MSKGSLLDFLKGETGKY--------LRLPQLVDMAAQIASGMAYV---ERMNYVHRDLRA 391

Query: 470 SSILLDRNLVAKISGLGL 487
           ++IL+  NLV K++  GL
Sbjct: 392 ANILVGENLVCKVADFGL 409

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 85.8 bits (213), Expect = 1e-18
 Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 25/148 (16%)

Query: 353 VYRGRL------NHASVAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           V   R           VA+K+L          D + ++  L  + H ++V   G C+E  
Sbjct: 37  VELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDG 96

Query: 404 ----CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEP 459
                ++ E++P+G+L++ L       KN      +    ++  A ++C G+ +L S   
Sbjct: 97  GNGIKLIMEFLPSGSLKEYL----PKNKN-----KINLKQQLKYAVQICKGMDYLGS--- 144

Query: 460 RPIVHGSLTPSSILLDRNLVAKISGLGL 487
           R  VH  L   ++L++     KI   GL
Sbjct: 145 RQYVHRDLAARNVLVESEHQVKIGDFGL 172

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 87.9 bits (218), Expect = 2e-18
 Identities = 44/138 (31%), Positives = 66/138 (47%), Gaps = 14/138 (10%)

Query: 353 VYRGRLN-HASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSEL-KCIVFEY 409
           V+ G  N    VAIKTL  G +S E F  +   +  +RH  LV +    SE    IV EY
Sbjct: 200 VWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEY 259

Query: 410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTP 469
           M  G+L D L    +        + LR    + +A ++  G++++   E    VH  L  
Sbjct: 260 MSKGSLLDFL----KG----ETGKYLRLPQLVDMAAQIASGMAYV---ERMNYVHRDLRA 308

Query: 470 SSILLDRNLVAKISGLGL 487
           ++IL+  NLV K++  GL
Sbjct: 309 ANILVGENLVCKVADFGL 326

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 85.8 bits (213), Expect = 2e-18
 Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 21/150 (14%)

Query: 353 VYRGRLNHAS-------VAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGCCSEL 402
           VY G+++          VA+KTL    SE+   DF  +   ++   H ++V  +G   + 
Sbjct: 46  VYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQS 105

Query: 403 K--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPR 460
               I+ E M  G+L+  L   +      S+  +L  LD +H+A ++  G  +L   E  
Sbjct: 106 LPRFILMELMAGGDLKSFL---RETRPRPSQPSSLAMLDLLHVARDIACGCQYL---EEN 159

Query: 461 PIVHGSLTPSSILLDR---NLVAKISGLGL 487
             +H  +   + LL       VAKI   G+
Sbjct: 160 HFIHRDIAARNCLLTCPGPGRVAKIGDFGM 189

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 85.0 bits (211), Expect = 3e-18
 Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 24/147 (16%)

Query: 353 VYRGRLN------HASVAIKTLNNGLSE--EDFQAKVSFLTAVRHPHLVAVMGCCSELK- 403
           V   R +         VA+K L +   E   DF+ ++  L +++H ++V   G C     
Sbjct: 26  VEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGR 85

Query: 404 ---CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPR 460
               ++ EY+P G+LRD L    + +K       L     +    ++C G+ +L +   +
Sbjct: 86  RNLKLIMEYLPYGSLRDYL----QKHKERIDHIKL-----LQYTSQICKGMEYLGT---K 133

Query: 461 PIVHGSLTPSSILLDRNLVAKISGLGL 487
             +H  L   +IL++     KI   GL
Sbjct: 134 RYIHRDLATRNILVENENRVKIGDFGL 160

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 85.1 bits (211), Expect = 3e-18
 Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 24/147 (16%)

Query: 353 VYRGRLN------HASVAIKTLNNGLSEE--DFQAKVSFLTAVRHPHLVAVMGCCSELK- 403
           V   R +         VA+K L +   E   DF+ ++  L +++H ++V   G C     
Sbjct: 57  VEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGR 116

Query: 404 ---CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPR 460
               ++ EY+P G+LRD L    + +K       L     +    ++C G+ +L +   +
Sbjct: 117 RNLKLIMEYLPYGSLRDYL----QKHKERIDHIKL-----LQYTSQICKGMEYLGT---K 164

Query: 461 PIVHGSLTPSSILLDRNLVAKISGLGL 487
             +H  L   +IL++     KI   GL
Sbjct: 165 RYIHRDLATRNILVENENRVKIGDFGL 191

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 85.9 bits (213), Expect = 4e-18
 Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 21/150 (14%)

Query: 353 VYRGRLNHAS-------VAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGCCSEL 402
           VY G+++          VA+KTL    SE+   DF  +   ++   H ++V  +G   + 
Sbjct: 87  VYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQS 146

Query: 403 K--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPR 460
               I+ E M  G+L+  L   +      S+  +L  LD +H+A ++  G  +L   E  
Sbjct: 147 LPRFILLELMAGGDLKSFL---RETRPRPSQPSSLAMLDLLHVARDIACGCQYL---EEN 200

Query: 461 PIVHGSLTPSSILLDR---NLVAKISGLGL 487
             +H  +   + LL       VAKI   G+
Sbjct: 201 HFIHRDIAARNCLLTCPGPGRVAKIGDFGM 230

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 84.2 bits (209), Expect = 6e-18
 Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 24/156 (15%)

Query: 353 VYRGRLNHAS-------VAIKTLNNGLSE---EDFQAKVSFLTAV-RHPHLVAVMGCCSE 401
           V                VA+K L         E   +++  L+ +  H ++V ++G C+ 
Sbjct: 39  VVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTI 98

Query: 402 LK--CIVFEYMPNGNLRD--------KLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGL 451
                ++ EY   G+L +         + +            AL   D +  +++V  G+
Sbjct: 99  GGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGM 158

Query: 452 SFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
           +FL     +  +H  L   +ILL    + KI   GL
Sbjct: 159 AFL---ASKNCIHRDLAARNILLTHGRITKICDFGL 191

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 84.6 bits (210), Expect = 6e-18
 Identities = 32/152 (21%), Positives = 61/152 (40%), Gaps = 20/152 (13%)

Query: 353 VYRGRL-------NHASVAIKTLNNGLSE---EDFQAKVSFLTAV-RHPHLVAVMGCCSE 401
           V                VA+K L +       E   +++  ++ + +H ++V ++G C+ 
Sbjct: 62  VVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTH 121

Query: 402 LK--CIVFEYMPNGN----LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLH 455
                ++ EY   G+    LR K    + +             D +H + +V  G++FL 
Sbjct: 122 GGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLA 181

Query: 456 STEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
           S   +  +H  +   ++LL    VAKI   GL
Sbjct: 182 S---KNCIHRDVAARNVLLTNGHVAKIGDFGL 210

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 83.5 bits (207), Expect = 1e-17
 Identities = 25/152 (16%), Positives = 54/152 (35%), Gaps = 24/152 (15%)

Query: 353 VYRGRLNHAS-----VAIKTLNNGLS----EEDFQAKVSFLTAVRHPHLVAVMGCCSE-- 401
           V   +L         VA+K L   +      E+F  + + +    HPH+  ++G      
Sbjct: 39  VREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSR 98

Query: 402 ------LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLH 455
                 +  ++  +M +G+L   L       +       L     +    ++  G+ +L 
Sbjct: 99  AKGRLPIPMVILPFMKHGDLHAFL----LASRIGENPFNLPLQTLVRFMVDIACGMEYL- 153

Query: 456 STEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
               R  +H  L   + +L  ++   ++  GL
Sbjct: 154 --SSRNFIHRDLAARNCMLAEDMTVCVADFGL 183

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 82.7 bits (205), Expect = 1e-17
 Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 20/143 (13%)

Query: 353 VYRGRLNHAS----VAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMG-CCSELKC 404
           V +G          VAIK L  G  +   E+   +   +  + +P++V ++G C +E   
Sbjct: 26  VRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALM 85

Query: 405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVH 464
           +V E    G L   L   +           +   +   + H+V +G+ +L   E +  VH
Sbjct: 86  LVMEMAGGGPLHKFLVGKREE---------IPVSNVAELLHQVSMGMKYL---EEKNFVH 133

Query: 465 GSLTPSSILLDRNLVAKISGLGL 487
             L   ++LL     AKIS  GL
Sbjct: 134 RDLAARNVLLVNRHYAKISDFGL 156

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968

 Score = 86.0 bits (212), Expect = 2e-17
 Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 4/121 (3%)

Query: 561 QDANRDLRIAGVMKELDEVRKKADGLADKRESEVVTDRCANKEDSNDVPSVFICPIFQEV 620
             A   L     +   + + K  +  A+K E E          +  DVP  F+ P+   +
Sbjct: 843 VRAVDILGRKTGLASPEFIEKLLN-FANKAE-EQRKADEEEDLEYGDVPDEFLDPLMYTI 900

Query: 621 MKTPHV-AADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNKQS 679
           MK P +  A   + +   ++  L +   T P   + LK + +TPN  LR  I  +  ++ 
Sbjct: 901 MKDPVILPASKMNIDRSTIKAHL-LSDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKK 959

Query: 680 S 680
            
Sbjct: 960 E 960

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 23/146 (15%)

Query: 353 VYRGRLNHA-----SVAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCSELK- 403
           VY G L          A+K+LN          F  +   +    HP++++++G C   + 
Sbjct: 41  VYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEG 100

Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              +V  YM +G+LR+ +    R     +        D I    +V  G+ +L S   + 
Sbjct: 101 SPLVVLPYMKHGDLRNFI----R-----NETHNPTVKDLIGFGLQVAKGMKYLAS---KK 148

Query: 462 IVHGSLTPSSILLDRNLVAKISGLGL 487
            VH  L   + +LD     K++  GL
Sbjct: 149 FVHRDLAARNCMLDEKFTVKVADFGL 174

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 82.3 bits (204), Expect = 3e-17
 Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 23/155 (14%)

Query: 353 VYRGRLNHAS-------VAIKTLNNGLSE---EDFQAKVSFLTAV-RHPHLVAVMGCCSE 401
           V                VA+K L  G +        +++  L  +  H ++V ++G C++
Sbjct: 43  VIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTK 102

Query: 402 LK---CIVFEYMPNGNLRDKL------FTSQRNYKNCSRARALRWLDRIHIAHEVCLGLS 452
                 ++ E+   GNL   L      F   +          L     I  + +V  G+ 
Sbjct: 103 PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGME 162

Query: 453 FLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
           FL S   R  +H  L   +ILL    V KI   GL
Sbjct: 163 FLAS---RKCIHRDLAARNILLSEKNVVKICDFGL 194

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 82.4 bits (204), Expect = 3e-17
 Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 24/147 (16%)

Query: 353 VYRGRLN------HASVAIKTLNNGLSE--EDFQAKVSFLTAVRHPHLVAVMGCCSELK- 403
           V   R +       A VA+K L +   +   DFQ ++  L A+    +V   G       
Sbjct: 39  VELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGR 98

Query: 404 ---CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPR 460
               +V EY+P+G LRD L    + ++       L     +  + ++C G+ +L S   R
Sbjct: 99  QSLRLVMEYLPSGCLRDFL----QRHRA-----RLDASRLLLYSSQICKGMEYLGS---R 146

Query: 461 PIVHGSLTPSSILLDRNLVAKISGLGL 487
             VH  L   +IL++     KI+  GL
Sbjct: 147 RCVHRDLAARNILVESEAHVKIADFGL 173

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 81.9 bits (203), Expect = 3e-17
 Identities = 27/151 (17%), Positives = 61/151 (40%), Gaps = 23/151 (15%)

Query: 353 VYRGRLNHAS-----VAIKTLNNGLSEE----DFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           V  G L         VA+KT+    S +    +F ++ + +    HP+++ ++G C E+ 
Sbjct: 50  VMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMS 109

Query: 404 C-------IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
                   ++  +M  G+L   L       +  +  + +     +    ++ LG+ +L  
Sbjct: 110 SQGIPKPMVILPFMKYGDLHTYL----LYSRLETGPKHIPLQTLLKFMVDIALGMEYL-- 163

Query: 457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
              R  +H  L   + +L  ++   ++  GL
Sbjct: 164 -SNRNFLHRDLAARNCMLRDDMTVCVADFGL 193

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 81.6 bits (202), Expect = 3e-17
 Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 33/162 (20%)

Query: 347 AGDWTNVYRGRLNHAS---------VAIKTLNNGLS--EEDFQAKVSFLTAVRHPHLVAV 395
            G +T +++G               V +K L+       E F    S ++ + H HLV  
Sbjct: 18  QGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLN 77

Query: 396 MGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSF 453
            G C       +V E++  G+L   L    +  KNC     +  L ++ +A ++   + F
Sbjct: 78  YGVCVCGDENILVQEFVKFGSLDTYL----KKNKNC-----INILWKLEVAKQLAAAMHF 128

Query: 454 LHSTEPRPIVHGSLTPSSILLDR--------NLVAKISGLGL 487
           L   E   ++HG++   +ILL R            K+S  G+
Sbjct: 129 L---EENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGI 167

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 81.1 bits (201), Expect = 4e-17
 Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 21/144 (14%)

Query: 353 VYRGRLNHAS-----VAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCS-ELK 403
           VY G   +       VA+KT     +    E F ++   +  + HPH+V ++G    E  
Sbjct: 28  VYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEEPT 87

Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
            I+ E  P G L   L       K      +L+ L  +  + ++C  +++L   E    V
Sbjct: 88  WIIMELYPYGELGHYL----ERNK-----NSLKVLTLVLYSLQICKAMAYL---ESINCV 135

Query: 464 HGSLTPSSILLDRNLVAKISGLGL 487
           H  +   +IL+      K+   GL
Sbjct: 136 HRDIAVRNILVASPECVKLGDFGL 159

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 82.4 bits (204), Expect = 4e-17
 Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 29/161 (18%)

Query: 353 VYRGRLNHAS-------VAIKTLNNGLSEE---DFQAKVSFLTAV-RHPHLVAVMGCCSE 401
           V        S       VA+K L             +++  +T +  H ++V ++G C+ 
Sbjct: 61  VMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTL 120

Query: 402 LK--CIVFEYMPNGNLRDKL-------------FTSQRNYKNCSRARALRWLDRIHIAHE 446
                ++FEY   G+L + L             + +Q+  +       L + D +  A++
Sbjct: 121 SGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQ 180

Query: 447 VCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
           V  G+ FL     +  VH  L   ++L+    V KI   GL
Sbjct: 181 VAKGMEFLEF---KSCVHRDLAARNVLVTHGKVVKICDFGL 218

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 81.5 bits (202), Expect = 5e-17
 Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 29/161 (18%)

Query: 353 VYRGRL-------NHASVAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCSEL 402
           V +           + +VA+K L    S     D  ++ + L  V HPH++ + G CS+ 
Sbjct: 39  VVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQD 98

Query: 403 K--CIVFEYMPNGNLRDKL--------------FTSQRNYKNCSRARALRWLDRIHIAHE 446
               ++ EY   G+LR  L               +   +  +    RAL   D I  A +
Sbjct: 99  GPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQ 158

Query: 447 VCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
           +  G+ +L       +VH  L   +IL+      KIS  GL
Sbjct: 159 ISQGMQYLAE---MKLVHRDLAARNILVAEGRKMKISDFGL 196

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 81.1 bits (201), Expect = 5e-17
 Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 22/144 (15%)

Query: 353 VYRGRLNHAS----VAIKTLNNGLSE----EDFQAKVSFLTAVRHPHLVAVMG-CCSELK 403
           V +G          VA+K L N  ++    ++  A+ + +  + +P++V ++G C +E  
Sbjct: 33  VKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESW 92

Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
            +V E    G L   L   Q+N       R ++  + I + H+V +G+ +L   E    V
Sbjct: 93  MLVMEMAELGPLNKYL---QQN-------RHVKDKNIIELVHQVSMGMKYL---EESNFV 139

Query: 464 HGSLTPSSILLDRNLVAKISGLGL 487
           H  L   ++LL     AKIS  GL
Sbjct: 140 HRDLAARNVLLVTQHYAKISDFGL 163

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 82.4 bits (204), Expect = 6e-17
 Identities = 31/153 (20%), Positives = 69/153 (45%), Gaps = 16/153 (10%)

Query: 348 GDWTNVYRGRLNHAS-VAIKTLNNGLSE---EDFQAKVSFLTAV-RHPHLVAVMGCCSEL 402
            +   + + + N  + VA+K L +  +E    D  +++  +  + +H +++ ++G C++ 
Sbjct: 88  AEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD 147

Query: 403 K--CIVFEYMPNGNLRDKL------FTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFL 454
               ++ EY   GNLR+ L              + +    L   D +  A++V  G+ +L
Sbjct: 148 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYL 207

Query: 455 HSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
                +  +H  L   ++L+  + V KI+  GL
Sbjct: 208 ---ASKKCIHRDLAARNVLVTEDNVMKIADFGL 237

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 81.6 bits (202), Expect = 7e-17
 Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 29/161 (18%)

Query: 353 VYRGRLNH-------ASVAIKTLNNGLSEE---DFQAKVSFLTAVRHPHLVAVMGCCSEL 402
           V++ R            VA+K L    S +   DFQ + + +    +P++V ++G C+  
Sbjct: 63  VFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVG 122

Query: 403 K--CIVFEYMPNGNLRDKL--------------FTSQRNYKNCSRARALRWLDRIHIAHE 446
           K  C++FEYM  G+L + L                S R   +      L   +++ IA +
Sbjct: 123 KPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQ 182

Query: 447 VCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
           V  G+++L     R  VH  L   + L+  N+V KI+  GL
Sbjct: 183 VAAGMAYLSE---RKFVHRDLATRNCLVGENMVVKIADFGL 220

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 23/146 (15%)

Query: 353 VYRGRL-----NHASVAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCSE--- 401
           VY G       N    AIK+L+        E F  +   +  + HP+++A++G       
Sbjct: 37  VYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEG 96

Query: 402 LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
           L  ++  YM +G+L   + + QRN             D I    +V  G+ +L     + 
Sbjct: 97  LPHVLLPYMCHGDLLQFIRSPQRN---------PTVKDLISFGLQVARGMEYL---AEQK 144

Query: 462 IVHGSLTPSSILLDRNLVAKISGLGL 487
            VH  L   + +LD +   K++  GL
Sbjct: 145 FVHRDLAARNCMLDESFTVKVADFGL 170

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 80.0 bits (198), Expect = 1e-16
 Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 21/144 (14%)

Query: 353 VYRGRL-----NHASVAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCSEL-K 403
           V++G          +VAIKT  N  S+   E F  +   +    HPH+V ++G  +E   
Sbjct: 31  VHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPV 90

Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
            I+ E    G LR  L    +      R  +L     I  A+++   L++L   E +  V
Sbjct: 91  WIIMELCTLGELRSFL----Q-----VRKYSLDLASLILYAYQLSTALAYL---ESKRFV 138

Query: 464 HGSLTPSSILLDRNLVAKISGLGL 487
           H  +   ++L+  N   K+   GL
Sbjct: 139 HRDIAARNVLVSSNDCVKLGDFGL 162

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 31/156 (19%), Positives = 65/156 (41%), Gaps = 24/156 (15%)

Query: 353 VYRGRLNHAS---------VAIKTLNNGLSEE---DFQAKVSFLTAV-RHPHLVAVMGCC 399
           V                  VA+K L +  +E+   D  +++  +  + +H +++ ++G C
Sbjct: 51  VVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGAC 110

Query: 400 SELK--CIVFEYMPNGNLRDKL------FTSQRNYKNCSRARALRWLDRIHIAHEVCLGL 451
           ++     ++ EY   GNLR+ L              N      + + D +   +++  G+
Sbjct: 111 TQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGM 170

Query: 452 SFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
            +L S   +  +H  L   ++L+  N V KI+  GL
Sbjct: 171 EYLAS---QKCIHRDLAARNVLVTENNVMKIADFGL 203

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 81.0 bits (200), Expect = 1e-16
 Identities = 35/146 (23%), Positives = 59/146 (40%), Gaps = 23/146 (15%)

Query: 353 VYRGRLNHAS-----VAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCSELK- 403
           VY G L          A+K+LN          F  +   +    HP++++++G C   + 
Sbjct: 105 VYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEG 164

Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              +V  YM +G+LR+ +    R     +        D I    +V  G+ FL S   + 
Sbjct: 165 SPLVVLPYMKHGDLRNFI----R-----NETHNPTVKDLIGFGLQVAKGMKFLAS---KK 212

Query: 462 IVHGSLTPSSILLDRNLVAKISGLGL 487
            VH  L   + +LD     K++  GL
Sbjct: 213 FVHRDLAARNCMLDEKFTVKVADFGL 238

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 80.9 bits (200), Expect = 1e-16
 Identities = 31/153 (20%), Positives = 68/153 (44%), Gaps = 16/153 (10%)

Query: 348 GDWTNVYRGRLNHAS-VAIKTLNNGLSE---EDFQAKVSFLTAV-RHPHLVAVMGCCSEL 402
            +   + + +   A  VA+K L +  +E    D  +++  +  + +H +++ ++G C++ 
Sbjct: 100 AEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 159

Query: 403 K--CIVFEYMPNGNLRDKL------FTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFL 454
               ++ EY   GNLR+ L              N      + + D +   +++  G+ +L
Sbjct: 160 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYL 219

Query: 455 HSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
            S   +  +H  L   ++L+  N V KI+  GL
Sbjct: 220 AS---QKCIHRDLAARNVLVTENNVMKIADFGL 249

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 81.9 bits (202), Expect = 2e-16
 Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 20/143 (13%)

Query: 353 VYRGRLNHAS----VAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCS-ELKC 404
           V +G          VAIK L  G  +   E+   +   +  + +P++V ++G C  E   
Sbjct: 352 VRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALM 411

Query: 405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVH 464
           +V E    G L   L   +           +   +   + H+V +G+ +L   E +  VH
Sbjct: 412 LVMEMAGGGPLHKFLVGKREE---------IPVSNVAELLHQVSMGMKYL---EEKNFVH 459

Query: 465 GSLTPSSILLDRNLVAKISGLGL 487
            +L   ++LL     AKIS  GL
Sbjct: 460 RNLAARNVLLVNRHYAKISDFGL 482

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 79.9 bits (197), Expect = 1e-15
 Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 21/144 (14%)

Query: 353 VYRGRLNHAS-----VAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCSELK- 403
           V++G           VAIKT  N  S+   E F  +   +    HPH+V ++G  +E   
Sbjct: 406 VHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPV 465

Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
            I+ E    G LR  L    +  K      +L     I  A+++   L++L   E +  V
Sbjct: 466 WIIMELCTLGELRSFL----QVRKF-----SLDLASLILYAYQLSTALAYL---ESKRFV 513

Query: 464 HGSLTPSSILLDRNLVAKISGLGL 487
           H  +   ++L+  N   K+   GL
Sbjct: 514 HRDIAARNVLVSSNDCVKLGDFGL 537

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 76.5 bits (189), Expect = 2e-15
 Identities = 35/146 (23%), Positives = 59/146 (40%), Gaps = 23/146 (15%)

Query: 353 VYRGRLNHAS-----VAIKTLNNGLSE-----EDFQAKVSFLTAVRHPHLVAVMGCCSEL 402
           V RG  +  S     VA+K L   +       +DF  +V+ + ++ H +L+ + G     
Sbjct: 34  VRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTP 93

Query: 403 K-CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              +V E  P G+L D+L   Q +                  A +V  G+ +L   E + 
Sbjct: 94  PMKMVTELAPLGSLLDRLRKHQGH---------FLLGTLSRYAVQVAEGMGYL---ESKR 141

Query: 462 IVHGSLTPSSILLDRNLVAKISGLGL 487
            +H  L   ++LL    + KI   GL
Sbjct: 142 FIHRDLAARNLLLATRDLVKIGDFGL 167

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 76.9 bits (190), Expect = 2e-15
 Identities = 33/145 (22%), Positives = 62/145 (42%), Gaps = 22/145 (15%)

Query: 353 VYRGRL------NHASVAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           VY+G            VAIK L    S    ++   +   + +V +PH+  ++G C    
Sbjct: 31  VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 90

Query: 404 -CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             ++ + MP G L D +    R +K+      +     ++   ++  G+++L   E R +
Sbjct: 91  VQLITQLMPFGCLLDYV----REHKD-----NIGSQYLLNWCVQIAKGMNYL---EDRRL 138

Query: 463 VHGSLTPSSILLDRNLVAKISGLGL 487
           VH  L   ++L+      KI+  GL
Sbjct: 139 VHRDLAARNVLVKTPQHVKITDFGL 163

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 75.7 bits (186), Expect = 3e-15
 Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 5/120 (4%)

Query: 560 DQDANRDLRIAGVMKELDEVRKKADGLADKRES-----EVVTDRCANKEDSNDVPSVFIC 614
           +++     R     ++   +R +   +  K +      + +  +   K    D+P     
Sbjct: 152 ERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYLCG 211

Query: 615 PIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEW 674
            I  E+M+ P +   G +Y+ + +EE L      +P+T   L  + L PN  ++ +I  +
Sbjct: 212 KISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAF 271

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 75.8 bits (187), Expect = 4e-15
 Identities = 26/145 (17%), Positives = 58/145 (40%), Gaps = 22/145 (15%)

Query: 353 VYRGRL------NHASVAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           V++G            V IK + +       +     +  + ++ H H+V ++G C    
Sbjct: 29  VHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPGSS 88

Query: 404 -CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             +V +Y+P G+L D +   +           L     ++   ++  G+ +L   E   +
Sbjct: 89  LQLVTQYLPLGSLLDHVRQHRGA---------LGPQLLLNWGVQIAKGMYYL---EEHGM 136

Query: 463 VHGSLTPSSILLDRNLVAKISGLGL 487
           VH +L   ++LL      +++  G+
Sbjct: 137 VHRNLAARNVLLKSPSQVQVADFGV 161

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 22/145 (15%)

Query: 353 VYRGRL------NHASVAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           VY+G            VAIK L    S    ++   +   + +V +PH+  ++G C    
Sbjct: 31  VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 90

Query: 404 -CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             ++ + MP G L D +   + N         +     ++   ++  G+++L   E R +
Sbjct: 91  VQLITQLMPFGCLLDYVREHKDN---------IGSQYLLNWCVQIAKGMNYL---EDRRL 138

Query: 463 VHGSLTPSSILLDRNLVAKISGLGL 487
           VH  L   ++L+      KI+  GL
Sbjct: 139 VHRDLAARNVLVKTPQHVKITDFGL 163

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 32/239 (13%), Positives = 71/239 (29%), Gaps = 42/239 (17%)

Query: 341 RFRLKC---AGDWTNVYRG---RLNHASVAIKTLNNGLSE-EDFQAKVSF----LTAVRH 389
           R+RL            ++     L+   VA+  ++      +D   +       L+ +  
Sbjct: 32  RYRLLIFHGGVPPLQFWQALDTALDRQ-VALTFVDPQGVLPDDVLQETLSRTLRLSRIDK 90

Query: 390 PHLVAV--MGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEV 447
           P +  V  +        +V E++  G+L++                +   +  I     +
Sbjct: 91  PGVARVLDVVHTRAGGLVVAEWIRGGSLQEVA------------DTSPSPVGAIRAMQSL 138

Query: 448 CLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVRSDIRAFGTLLL 507
                  H      +      PS + +  +    ++          N + DIR  G  L 
Sbjct: 139 AAAADAAHR---AGVALSIDHPSRVRVSIDGDVVLAYPA--TMPDANPQDDIRGIGASLY 193

Query: 508 HLLTGR------NWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSAD 560
            LL  R           +  A        ++  D +  I       +++ +A + +  D
Sbjct: 194 ALLVNRWPLPEAGVRSGLAPAERDTAGQPIEPADIDRDIPF-----QISAVAARSVQGD 247

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 63.1 bits (153), Expect = 1e-12
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 612 FICPIFQEVMKTPHVAAD-GFSYELEAMEEWLGMGHDTS-----PMT---NLRLKHKYLT 662
           F CPI +E MK P      G +YE +A+   +            P     +  ++   L 
Sbjct: 8   FTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLI 67

Query: 663 PNHTLRSLIQEWHNKQS 679
            +  LR  I+  + K+ 
Sbjct: 68  QDEALRRAIENHNKKRH 84

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 42/196 (21%), Positives = 69/196 (35%), Gaps = 46/196 (23%)

Query: 353 VYRG--RLNHASVAIKTLN-NGLSEED---FQAKVSFLTAVRHPHLVAVMGCCSELK--- 403
           VY+G        VA   L    L++ +   F+ +   L  ++HP++V             
Sbjct: 42  VYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGK 101

Query: 404 ---CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPR 460
               +V E M +G L+  L    + +K         W        ++  GL FLH+  P 
Sbjct: 102 KCIVLVTELMTSGTLKTYL----KRFKVMKIKVLRSW------CRQILKGLQFLHTRTP- 150

Query: 461 PIVHGSLTPSSILLDRNL-VAKISGLGL----------------------NICDQLNVRS 497
           PI+H  L   +I +       KI  LGL                         ++ +   
Sbjct: 151 PIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEEKYDESV 210

Query: 498 DIRAFGTLLLHLLTGR 513
           D+ AFG  +L + T  
Sbjct: 211 DVYAFGMCMLEMATSE 226

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 63.5 bits (155), Expect = 5e-11
 Identities = 25/145 (17%), Positives = 52/145 (35%), Gaps = 19/145 (13%)

Query: 353 VY--RGRLNHASVAIK--TLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK----- 403
           V    G  +    A+K    +     E+ Q +        HP+++ ++  C   +     
Sbjct: 45  VDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHE 104

Query: 404 -CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             ++  +   G L +++   +      +  + L  L        +C GL  +H+   +  
Sbjct: 105 AWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLL------LGICRGLEAIHA---KGY 155

Query: 463 VHGSLTPSSILLDRNLVAKISGLGL 487
            H  L P++ILL       +  LG 
Sbjct: 156 AHRDLKPTNILLGDEGQPVLMDLGS 180

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 64.9 bits (158), Expect = 6e-11
 Identities = 40/195 (20%), Positives = 63/195 (32%), Gaps = 49/195 (25%)

Query: 352 NVYRG---RLNHASVAIKTLNNGLSEED---FQAKVSFLTAVRHPHLVAV-------MGC 398
            +Y      +N   V +K L +    E      A+  FL  V HP +V +          
Sbjct: 95  WIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRH 154

Query: 399 CSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTE 458
              +  IV EY+   +L+                + L   + I    E+   LS+LHS  
Sbjct: 155 GDPVGYIVMEYVGGQSLKRSK------------GQKLPVAEAIAYLLEILPALSYLHS-- 200

Query: 459 PRPIVHGSLTPSSILLDRNLVAKISGLGL--------------------NICDQLNVRSD 498
              +V+  L P +I+L    + K+  LG                      +     V +D
Sbjct: 201 -IGLVYNDLKPENIMLTEEQL-KLIDLGAVSRINSFGYLYGTPGFQAPEIVRTGPTVATD 258

Query: 499 IRAFGTLLLHLLTGR 513
           I   G  L  L    
Sbjct: 259 IYTVGRTLAALTLDL 273

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 62.6 bits (153), Expect = 7e-11
 Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 24/146 (16%)

Query: 352 NVYRGR--LNHASVAIKTLN------NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           NVY  R   +   +A+K L        G+ E   + +V   + +RHP+++ + G   +  
Sbjct: 24  NVYLAREKQSKFILALKVLFKAQLEKAGV-EHQLRREVEIQSHLRHPNILRLYGYFHDAT 82

Query: 404 CI--VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
            +  + EY P G +  +L    + +    R              E+   LS+ HS   + 
Sbjct: 83  RVYLILEYAPLGTVYRELQKLSK-FDE-QRTA--------TYITELANALSYCHS---KR 129

Query: 462 IVHGSLTPSSILLDRNLVAKISGLGL 487
           ++H  + P ++LL      KI+  G 
Sbjct: 130 VIHRDIKPENLLLGSAGELKIADFGW 155

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.5 bits (156), Expect = 8e-11
 Identities = 89/642 (13%), Positives = 188/642 (29%), Gaps = 209/642 (32%)

Query: 130 NSEDGDEILQTRAIEPNAAEQIDSNMSVAERTEFMKSKIN--EAREMIRLKKKETKDDAE 187
           + E G+   Q + I     +    N    +  +  KS ++  E   +I      +KD   
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII-----MSKDAVS 62

Query: 188 RCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSS 247
              +  W   L + + + ++   +E       ++ +   L       I+  +   + ++ 
Sbjct: 63  GTLRLFW--TLLSKQEEMVQKFVEE------VLRINYKFLMSP----IKTEQRQPSMMTR 110

Query: 248 L-IELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDI----EELRRQRDV-LHRRI 301
           + IE +  L N  Q+   AK +         ++R +    +     ELR  ++V +    
Sbjct: 111 MYIEQRDRLYNDNQV--FAKYN---------VSRLQPYLKLRQALLELRPAKNVLID--- 156

Query: 302 EFCKEKDAIGM-----------VIRSSELSCAFREYAAEDIRLATEDFSERFRLKCAGDW 350
                    G+           V  S ++ C               DF + F       W
Sbjct: 157 ---------GVLGSGKTWVALDVCLSYKVQCKM-------------DF-KIF-------W 186

Query: 351 TNVYRGRLNHASVAIKTLNNGLS--EEDFQAKVSFLTAVRHPHLVAVMGCCSELKCIVFE 408
            N+     N     ++ L   L   + ++ ++    + ++             ++     
Sbjct: 187 LNL--KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR--------IHSIQ----- 231

Query: 409 YMPNGNLRDKLFTSQRNYKNC-------SRARALRWLD---RIHIA---HEVCLGLSFLH 455
                    +     + Y+NC         A+A    +   +I +     +V   LS   
Sbjct: 232 ------AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 456 STEPRPIVH--GSLTPSSILLDRNLVAKISGLGLNICD------QLNVRSDIRAFGTLLL 507
           +T    + H   +LTP  +    +L+ K   L     D        N R  +      + 
Sbjct: 286 TTHI-SLDHHSMTLTPDEVK---SLLLKY--LDCRPQDLPREVLTTNPRR-LSIIAESIR 338

Query: 508 -HLLTGRNWAGL----VEKAM-----ALDQTTLMQ------VLDGNAGI--------WPL 543
             L T  NW  +    +   +      L+     +      V   +A I        W  
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398

Query: 544 DLAEELAGIALKCLS---ADQDANRD-LRIAGVMKELDEVRKKADGLADKRESEVVTDRC 599
            +  ++  +  K       ++      + I  +     E++ K +       S V     
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI---YLELKVKLENEYALHRSIVDHYNI 455

Query: 600 ANKEDSNDVPSVFICP-----IFQEVMKTPHVAADGFSYELEAMEE-------------- 640
               DS+D     I P      +       H+      + L+ +E               
Sbjct: 456 PKTFDSDD----LIPPYLDQYFYS------HIG-----HHLKNIEHPERMTLFRMVFLDF 500

Query: 641 -WLG--MGHDTSP----------MTNLRLKHKYLTPNHTLRS 669
            +L   + HD++           +  L+    Y+  N     
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 6e-09
 Identities = 89/604 (14%), Positives = 169/604 (27%), Gaps = 202/604 (33%)

Query: 24  HHHM---------------PDYCELFII---CGGKLVSLKG-----ENDEGIMEDD---- 56
           HHHM                 + + F+    C       K      E D  IM  D    
Sbjct: 4   HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63

Query: 57  -------------QGVK-FAKMRERVNFGNLWTKMFSGNGRNP-----------NRLSIC 91
                        + V+ F +   R+N+  L +       R P           +RL   
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP-IKTEQRQPSMMTRMYIEQRDRL--- 119

Query: 92  SRGPDADSPYSRSTWE------NCVQE------IEIY-------------------FQHL 120
                  + Y+ S  +        + E      + I                     Q  
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179

Query: 121 ASFN---LDDASNSEDGD--EILQT--RAIEPNAAEQIDSNMSVAERTEFMKSKINEARE 173
             F    L+  + +      E+LQ     I+PN   + D + ++  R   +++++   R 
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL---RR 236

Query: 174 MIRLKKKETK----DDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEI-QRD---LD 225
           +++ K  E       +            + N++A    +    +++ ++ +  R     D
Sbjct: 237 LLKSKPYENCLLVLLN------------VQNAKA--WNAF---NLSCKILLTTRFKQVTD 279

Query: 226 SLKEQSCEVIRDVEESKNRLSSLIELQSE--LSNKLQLST------MAKGHAEAQLEKAV 277
            L   +   I     S     +L   + +  L   L          +   +       ++
Sbjct: 280 FLSAATTTHISLDHHSM----TLTPDEVKSLLLKYLDCRPQDLPREVLTTNP---RRLSI 332

Query: 278 IARAEIVKDIEELRRQRDVLHRRIEFCK--EKDAIGMVIRSSELSCAFREYAAEDIRLAT 335
           IA        E +R          +  K    D +  +I SS L+            L  
Sbjct: 333 IA--------ESIRDGLA----TWDNWKHVNCDKLTTIIESS-LNV-----------LEP 368

Query: 336 EDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLN---NGLSEEDFQAKVSFLT----AVR 388
            ++ + F  + +     V+      A +    L+     + + D    V+ L       +
Sbjct: 369 AEYRKMFD-RLS-----VFP---PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 389 HP--HLVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKN-CSRARALRWLDR---IH 442
            P    +++     ELK    +      L   +       K   S      +LD+    H
Sbjct: 420 QPKESTISIPSIYLELKV---KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476

Query: 443 IAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD-RNLVAKISGLGLNIC---DQLNVRSD 498
           I H         H          +L    + LD R L  KI             LN    
Sbjct: 477 IGH---------HLKNIEHPERMTLFR-MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526

Query: 499 IRAF 502
           ++ +
Sbjct: 527 LKFY 530

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 44/239 (18%), Positives = 80/239 (33%), Gaps = 58/239 (24%)

Query: 363 VAIKTLN-NGLSEEDFQAK---VSFLTAVRHPHLVAVMGCCSELK----CIVFEYMPNGN 414
           +  K L+   ++E + Q     V+ L  ++HP++V       +       IV EY   G+
Sbjct: 34  LVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGD 93

Query: 415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS--TEPRPIVHGSLTPSSI 472
           L   +    +  +       LR +       ++ L L   H        ++H  L P+++
Sbjct: 94  LASVITKGTKERQYLDEEFVLRVM------TQLTLALKECHRRSDGGHTVLHRDLKPANV 147

Query: 473 LLDRNLVAKISGLGLN-----------------------ICDQL--NVRSDIRAFGTLLL 507
            LD     K+   GL                          +++  N +SDI + G LL 
Sbjct: 148 FLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLY 207

Query: 508 HLLTGR------NWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSAD 560
            L          +   L  K           + +G     P   ++EL  I  + L+  
Sbjct: 208 ELCALMPPFTAFSQKELAGK-----------IREGKFRRIPYRYSDELNEIITRMLNLK 255

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 33/155 (21%), Positives = 63/155 (40%), Gaps = 24/155 (15%)

Query: 352 NVY--RGRLNHASVAIKTLN------NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           NVY  R + N   +A+K L        G+ E   + ++   + +RHP+++ +     + K
Sbjct: 29  NVYLAREKQNKFIMALKVLFKSQLEKEGV-EHQLRREIEIQSHLRHPNILRMYNYFHDRK 87

Query: 404 CI--VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
            I  + E+ P G L  +L    R +    R+             E+   L + H    R 
Sbjct: 88  RIYLMLEFAPRGELYKELQKHGR-FDE-QRSA--------TFMEELADALHYCHE---RK 134

Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVR 496
           ++H  + P ++L+      KI+  G ++      R
Sbjct: 135 VIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRR 169

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 35/153 (22%), Positives = 55/153 (35%), Gaps = 30/153 (19%)

Query: 353 VYRGR--LNHASVAIKTLN-NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK------ 403
           V + R  L+    AIK +           ++V  L ++ H ++V       E +      
Sbjct: 22  VVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPM 81

Query: 404 ---------CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFL 454
                     I  EY  NG L D +        N  R    R         ++   LS++
Sbjct: 82  TAVKKKSTLFIQMEYCENGTLYDLI---HSENLNQQRDEYWRLF------RQILEALSYI 132

Query: 455 HSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
           HS   + I+H  L P +I +D +   KI   GL
Sbjct: 133 HS---QGIIHRDLKPMNIFIDESRNVKIGDFGL 162

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 60.9 bits (148), Expect = 4e-10
 Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 27/158 (17%)

Query: 352 NVYRGRLNHASVAIKTLN-------------------NGLSEEDFQAKVSFLTAVRHPHL 392
            +     ++   A+K                           +DF+ ++  +T +++ + 
Sbjct: 46  KIILCEKDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYC 105

Query: 393 VA---VMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCL 449
           +    ++    E+  I++EYM N ++           KN      +       I   V  
Sbjct: 106 LTCEGIITNYDEV-YIIYEYMENDSILKFDEYFFVLDKN--YTCFIPIQVIKCIIKSVLN 162

Query: 450 GLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
             S++H+   + I H  + PS+IL+D+N   K+S  G 
Sbjct: 163 SFSYIHNE--KNICHRDVKPSNILMDKNGRVKLSDFGE 198

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 60.5 bits (147), Expect = 6e-10
 Identities = 44/247 (17%), Positives = 88/247 (35%), Gaps = 61/247 (24%)

Query: 353 VYRGR--LNHASVAIKTLN-NGLSEEDFQAK---VSFLTAVRHPHLVAVMGCCSELK--C 404
               +   +     IK +N + +S ++ +     V+ L  ++HP++V       E     
Sbjct: 40  AILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLY 99

Query: 405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVH 464
           IV +Y   G+L  ++  + +        + L W        ++CL L  +H    R I+H
Sbjct: 100 IVMDYCEGGDLFKRI--NAQKGVLFQEDQILDWF------VQICLALKHVHD---RKILH 148

Query: 465 GSLTPSSILLDRNLVAKISGLGLN-----------------------ICDQL--NVRSDI 499
             +   +I L ++   ++   G+                        IC+    N +SDI
Sbjct: 149 RDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLSPEICENKPYNNKSDI 208

Query: 500 RAFGTLLLHLLTGR------NWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIA 553
            A G +L  L T +      +   LV K           ++ G+     L  + +L  + 
Sbjct: 209 WALGCVLYELCTLKHAFEAGSMKNLVLK-----------IISGSFPPVSLHYSYDLRSLV 257

Query: 554 LKCLSAD 560
            +    +
Sbjct: 258 SQLFKRN 264

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 60.0 bits (146), Expect = 7e-10
 Identities = 27/145 (18%), Positives = 51/145 (35%), Gaps = 22/145 (15%)

Query: 352 NVYRGR--LNHASVAIKTLN-NGLSEEDFQAKV----SFLTAVRHPHLVAVMGCCSELKC 404
             +           A K +  + L +   + K+    S   ++ H H+V   G   +   
Sbjct: 56  KCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDF 115

Query: 405 I--VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
           +  V E     +L +     +R       AR        +   ++ LG  +LH      +
Sbjct: 116 VFVVLELCRRRSLLELH--KRRKALTEPEAR--------YYLRQIVLGCQYLHR---NRV 162

Query: 463 VHGSLTPSSILLDRNLVAKISGLGL 487
           +H  L   ++ L+ +L  KI   GL
Sbjct: 163 IHRDLKLGNLFLNEDLEVKIGDFGL 187

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 59.5 bits (145), Expect = 9e-10
 Identities = 27/145 (18%), Positives = 51/145 (35%), Gaps = 22/145 (15%)

Query: 352 NVYRGR--LNHASVAIKTLN-NGLSEEDFQAKV----SFLTAVRHPHLVAVMGCCSELKC 404
             +           A K +  + L +   + K+    S   ++ H H+V   G   +   
Sbjct: 30  KCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDF 89

Query: 405 I--VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
           +  V E     +L +     +R       AR        +   ++ LG  +LH      +
Sbjct: 90  VFVVLELCRRRSLLELH--KRRKALTEPEAR--------YYLRQIVLGCQYLHR---NRV 136

Query: 463 VHGSLTPSSILLDRNLVAKISGLGL 487
           +H  L   ++ L+ +L  KI   GL
Sbjct: 137 IHRDLKLGNLFLNEDLEVKIGDFGL 161

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 33/155 (21%)

Query: 353 VYRGR--LNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK------- 403
           V++ +  ++  +  IK +    + E  + +V  L  + H ++V   GC            
Sbjct: 27  VFKAKHRIDGKTYVIKRVK--YNNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSS 84

Query: 404 -----------CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLS 452
                       I  E+   G L   +   +R  +   +  AL          ++  G+ 
Sbjct: 85  KNSSRSKTKCLFIQMEFCDKGTLEQWI--EKRRGEKLDKVLALELF------EQITKGVD 136

Query: 453 FLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
           ++HS   + +++  L PS+I L      KI   GL
Sbjct: 137 YIHS---KKLINRDLKPSNIFLVDTKQVKIGDFGL 168

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 38/200 (19%), Positives = 68/200 (34%), Gaps = 54/200 (27%)

Query: 352 NVYRG---RLNHASVAIKTLNNGLSE-EDFQAKVSF------LTAVRHPHLVAV--MGCC 399
            VY      LN   VAIK +     E E+   +  F       + + H ++V++  +   
Sbjct: 26  TVYLAEDTILNI-KVAIKAIFIPPREKEETLKR--FEREVHNSSQLSHQNIVSMIDVDEE 82

Query: 400 SELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEP 459
            +   +V EY+    L + +               L     I+  +++  G+   H    
Sbjct: 83  DDCYYLVMEYIEGPTLSEYI----------ESHGPLSVDTAINFTNQILDGIKHAHD--- 129

Query: 460 RPIVHGSLTPSSILLDRNLVAKISGLGLNIC--------------------------DQL 493
             IVH  + P +IL+D N   KI   G+                             +  
Sbjct: 130 MRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEAT 189

Query: 494 NVRSDIRAFGTLLLHLLTGR 513
           +  +DI + G +L  +L G 
Sbjct: 190 DECTDIYSIGIVLYEMLVGE 209

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 57.6 bits (139), Expect = 5e-09
 Identities = 35/205 (17%), Positives = 62/205 (30%), Gaps = 73/205 (35%)

Query: 353 VYRGRLNH-------ASVAIKTLNNGLSE---EDFQAKVSFLTAV-RHPHLVAVMGCCSE 401
           V               +VA+K L  G +        +++  L  +  H ++V ++G C++
Sbjct: 38  VIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTK 97

Query: 402 LK---CIVFEYMPNGNLRDKL--------------------------------------- 419
                 ++ E+   GNL   L                                       
Sbjct: 98  PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSIT 157

Query: 420 ---------FTSQRNYKNCSRARALRWLDRIHI--------AHEVCLGLSFLHSTEPRPI 462
                    F  +++  +     A   L +  +        + +V  G+ FL S   R  
Sbjct: 158 SSQSSASSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKC 214

Query: 463 VHGSLTPSSILLDRNLVAKISGLGL 487
           +H  L   +ILL    V KI   GL
Sbjct: 215 IHRDLAARNILLSEKNVVKICDFGL 239

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 56.8 bits (138), Expect = 6e-09
 Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 21/145 (14%)

Query: 352 NVYRGR--LNHASVAIKTLN-NGLSEEDFQAKV----SFLTAVRHPHLVAVMGCCSELKC 404
            VYR         VAIK ++   + +     +V         ++HP ++ +     +   
Sbjct: 26  GVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNY 85

Query: 405 I--VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
           +  V E   NG +   L    + +   + AR        H  H++  G+ +LHS     I
Sbjct: 86  VYLVLEMCHNGEMNRYLKNRVKPFSE-NEAR--------HFMHQIITGMLYLHS---HGI 133

Query: 463 VHGSLTPSSILLDRNLVAKISGLGL 487
           +H  LT S++LL RN+  KI+  GL
Sbjct: 134 LHRDLTLSNLLLTRNMNIKIADFGL 158

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 31/154 (20%), Positives = 56/154 (36%), Gaps = 29/154 (18%)

Query: 353 VYRGR--LNHASVAIKTLN---NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK---- 403
           V+  +  ++  + AIK +      L+ E    +V  L  + HP +V       E      
Sbjct: 21  VFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEK 80

Query: 404 ----------CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSF 453
                      I  +     NL+D +   +   +   R+  L          ++   + F
Sbjct: 81  LQPSSPKVYLYIQMQLCRKENLKDWM-NGRCTIEERERSVCLHIF------LQIAEAVEF 133

Query: 454 LHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
           LHS   + ++H  L PS+I    + V K+   GL
Sbjct: 134 LHS---KGLMHRDLKPSNIFFTMDDVVKVGDFGL 164

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 57.2 bits (138), Expect = 9e-09
 Identities = 32/154 (20%), Positives = 55/154 (35%), Gaps = 27/154 (17%)

Query: 345 KCAGDWTNVYRGR--LNHASVAIKTLN-NGLSEEDF---QAKVSFLTAVRHPHLVAVMGC 398
           K   D   V   R       V ++ +N    S E     Q ++       HP++V     
Sbjct: 35  KGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRAT 94

Query: 399 ---CSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIA---HEVCLGLS 452
               +EL  +V  +M  G+ +D +               +  ++ + IA     V   L 
Sbjct: 95  FIADNEL-WVVTSFMAYGSAKDLI-----------CTHFMDGMNELAIAYILQGVLKALD 142

Query: 453 FLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG 486
           ++H       VH S+  S IL+  +    +SGL 
Sbjct: 143 YIHH---MGYVHRSVKASHILISVDGKVYLSGLR 173

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 51/211 (24%)

Query: 353 VYRGR--LNHASVAIKTLN--NGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCSELK-- 403
           VYR    L+   VA+K +   + +      D   ++  L  + HP+++       E    
Sbjct: 48  VYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNEL 107

Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
            IV E    G+L   +   ++  +        ++        ++C  L  +HS   R ++
Sbjct: 108 NIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYF------VQLCSALEHMHS---RRVM 158

Query: 464 HGSLTPSSILLDRNLVAKISGLGLN-----------------------ICDQL--NVRSD 498
           H  + P+++ +    V K+  LGL                           +   N +SD
Sbjct: 159 HRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSD 218

Query: 499 IRAFGTLLLHLLTGR--------NWAGLVEK 521
           I + G LL  +   +        N   L +K
Sbjct: 219 IWSLGCLLYEMAALQSPFYGDKMNLYSLCKK 249

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 55.8 bits (134), Expect = 3e-08
 Identities = 43/202 (21%), Positives = 69/202 (34%), Gaps = 50/202 (24%)

Query: 352 NVYRGR--LNHASVAIKTLNNGLSEEDFQA---KVSFLTAVRHPHLVAV--------MGC 398
            V R         VAIK     LS ++ +    ++  +  + HP++V+            
Sbjct: 29  YVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLA 88

Query: 399 CSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTE 458
            ++L  +  EY   G+LR  L   +           L+      +  ++   L +LH   
Sbjct: 89  PNDLPLLAMEYCEGGDLRKYLNQFENCCG-------LKEGPIRTLLSDISSALRYLHE-- 139

Query: 459 PRPIVHGSLTPSSILLDRN---LVAKISGLGL-NICDQL--------------------- 493
              I+H  L P +I+L      L+ KI  LG     DQ                      
Sbjct: 140 -NRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFVGTLQYLAPELLEQK 198

Query: 494 --NVRSDIRAFGTLLLHLLTGR 513
              V  D  +FGTL    +TG 
Sbjct: 199 KYTVTVDYWSFGTLAFECITGF 220

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 35/152 (23%), Positives = 58/152 (38%), Gaps = 30/152 (19%)

Query: 353 VYRGRLNH--ASVAIK--TLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCC---SELKCI 405
           VY          VAI+   L     +E    ++  +   ++P++V  +       EL  +
Sbjct: 36  VYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDEL-WV 94

Query: 406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIA---HEVCLGLSFLHSTEPRPI 462
           V EY+  G+L D + T                +D   IA    E    L FLHS     +
Sbjct: 95  VMEYLAGGSLTD-VVTETC-------------MDEGQIAAVCRECLQALEFLHS---NQV 137

Query: 463 VHGSLTPSSILLDRNLVAKISGLGLNICDQLN 494
           +H  +   +ILL  +   K++  G   C Q+ 
Sbjct: 138 IHRDIKSDNILLGMDGSVKLTDFG--FCAQIT 167

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 35/152 (23%), Positives = 60/152 (39%), Gaps = 30/152 (19%)

Query: 353 VYRGRLNH--ASVAIKT--LNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCC---SELKCI 405
           V   R  H    VA+K   L      E    +V  +   +H ++V +        EL  +
Sbjct: 61  VCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEEL-WV 119

Query: 406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIA---HEVCLGLSFLHSTEPRPI 462
           + E++  G L D + +  R             L+   IA     V   L++LH+   + +
Sbjct: 120 LMEFLQGGALTD-IVSQVR-------------LNEEQIATVCEAVLQALAYLHA---QGV 162

Query: 463 VHGSLTPSSILLDRNLVAKISGLGLNICDQLN 494
           +H  +   SILL  +   K+S  G   C Q++
Sbjct: 163 IHRDIKSDSILLTLDGRVKLSDFG--FCAQIS 192

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 53.5 bits (129), Expect = 8e-08
 Identities = 34/158 (21%), Positives = 61/158 (38%), Gaps = 22/158 (13%)

Query: 353 VYRGR--LNHASVAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGC---CSELKC 404
           V           VAIK +N    +   ++   ++  ++   HP++V+         EL  
Sbjct: 31  VQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDEL-W 89

Query: 405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIA---HEVCLGLSFLHSTEPRP 461
           +V + +  G++ D +       ++ S       LD   IA    EV  GL +LH      
Sbjct: 90  LVMKLLSGGSVLDIIKHIVAKGEHKSGV-----LDESTIATILREVLEGLEYLHK---NG 141

Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVRSDI 499
            +H  +   +ILL  +   +I+  G  +   L    DI
Sbjct: 142 QIHRDVKAGNILLGEDGSVQIADFG--VSAFLATGGDI 177

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 53.4 bits (129), Expect = 8e-08
 Identities = 43/206 (20%), Positives = 70/206 (33%), Gaps = 60/206 (29%)

Query: 352 NVYRG---RLNHASVAIKTLNNGLSE-EDFQAKVSF------LTAVRHPHLVAV------ 395
            V+     R +   VA+K L   L+    F  +  F        A+ HP +VAV      
Sbjct: 27  EVHLARDLRDHR-DVAVKVLRADLARDPSFYLR--FRREAQNAAALNHPAIVAVYDTGEA 83

Query: 396 MGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLH 455
                 L  IV EY+    LRD +               +     I +  + C  L+F H
Sbjct: 84  ETPAGPLPYIVMEYVDGVTLRDIV----------HTEGPMTPKRAIEVIADACQALNFSH 133

Query: 456 STEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC------------------------- 490
                 I+H  + P++I++      K+   G+                            
Sbjct: 134 Q---NGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQ 190

Query: 491 ---DQLNVRSDIRAFGTLLLHLLTGR 513
              D ++ RSD+ + G +L  +LTG 
Sbjct: 191 ARGDSVDARSDVYSLGCVLYEVLTGE 216

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 53.5 bits (129), Expect = 9e-08
 Identities = 34/172 (19%), Positives = 65/172 (37%), Gaps = 31/172 (18%)

Query: 336 EDFSERFR-LKCAGDWT--NVYRGR--LNHASVAIKT--LNNGLSEEDFQAKVSFLTAVR 388
            D +E +  +   GD     VY+ +     A  A K     +    ED+  ++  L    
Sbjct: 15  LDPNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCD 74

Query: 389 HPHLVAVMGCC---SELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIA- 444
           HP++V ++G      +L  I+ E+ P G +   +    R             L    I  
Sbjct: 75  HPYIVKLLGAYYHDGKL-WIMIEFCPGGAVDAIMLELDRG------------LTEPQIQV 121

Query: 445 --HEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLN 494
              ++   L+FLHS   + I+H  L   ++L+      +++  G  +  +  
Sbjct: 122 VCRQMLEALNFLHS---KRIIHRDLKAGNVLMTLEGDIRLADFG--VSAKNL 168

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 53.0 bits (128), Expect = 9e-08
 Identities = 24/111 (21%), Positives = 51/111 (45%), Gaps = 18/111 (16%)

Query: 381 VSFLTAVRHPHLVA---VMGCCSELK-CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALR 436
           ++ L  + HP++V    V+   +E    +VFE +  G + +   T +      S  +A  
Sbjct: 87  IAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVP-TLKP----LSEDQARF 141

Query: 437 WLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
           +        ++  G+ +LH    + I+H  + PS++L+  +   KI+  G+
Sbjct: 142 YF------QDLIKGIEYLHY---QKIIHRDIKPSNLLVGEDGHIKIADFGV 183

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 24/145 (16%)

Query: 353 VYRGR--LNHASVAIKTLN-NGLSEEDFQAKV----SFLTAVRHPHLVA---VMGCCSEL 402
           V  G   L    VA+K LN   +   D   K+      L   RHPH++    V+   ++ 
Sbjct: 27  VKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDF 86

Query: 403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             +V EY+  G L D +    R  +  +R           +  ++   + + H      +
Sbjct: 87  -FMVMEYVSGGELFDYICKHGRVEEMEAR----------RLFQQILSAVDYCHR---HMV 132

Query: 463 VHGSLTPSSILLDRNLVAKISGLGL 487
           VH  L P ++LLD ++ AKI+  GL
Sbjct: 133 VHRDLKPENVLLDAHMNAKIADFGL 157

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 33/200 (16%), Positives = 58/200 (29%), Gaps = 54/200 (27%)

Query: 352 NVYRG---RLNHASVAIKTLNNGLSE-EDFQAKVSFL------TAVRHPHLVAV--MGCC 399
           +VY           VA+K ++  LS    F+ +            ++ PH+V +   G  
Sbjct: 49  DVYEAEDTVRER-IVALKLMSETLSSDPVFRTR--MQREARTAGRLQEPHVVPIHDFGEI 105

Query: 400 SELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEP 459
                +    +   +L   L           R   L     + I  ++   L   H+   
Sbjct: 106 DGQLYVDMRLINGVDLAAML----------RRQGPLAPPRAVAIVRQIGSALDAAHA--- 152

Query: 460 RPIVHGSLTPSSILLDRNLVAKISGLGLNIC--------------------------DQL 493
               H  + P +IL+  +  A +   G+                                
Sbjct: 153 AGATHRDVKPENILVSADDFAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERFSESHA 212

Query: 494 NVRSDIRAFGTLLLHLLTGR 513
             R+DI A   +L   LTG 
Sbjct: 213 TYRADIYALTCVLYECLTGS 232

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 18/148 (12%)

Query: 353 VYRG--RLNHASVAIKTLNNGLSEEDFQAK----VSFLTAV-RHPHLVAVMGCCSELK-- 403
           V++   RL+    AIK     L+    +      V     + +H H+V      +E    
Sbjct: 27  VFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHM 86

Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
            I  EY   G+L D +  + R       A     L       +V  GL ++HS     +V
Sbjct: 87  LIQNEYCNGGSLADAISENYRIMSYFKEAELKDLL------LQVGRGLRYIHS---MSLV 137

Query: 464 HGSLTPSSILLDRNLVAKISGLGLNICD 491
           H  + PS+I + R  +   +    +  D
Sbjct: 138 HMDIKPSNIFISRTSIPNAASEEGDEDD 165

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 26/155 (16%)

Query: 348 GDWTNVYRG--RLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCC---SEL 402
           G + +VY+   +     VAIK +      ++   ++S +     PH+V   G     ++L
Sbjct: 40  GSYGSVYKAIHKETGQIVAIKQVPVESDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDL 99

Query: 403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIA---HEVCLGLSFLHSTEP 459
             IV EY   G++ D +    +             L    IA        GL +LH    
Sbjct: 100 -WIVMEYCGAGSVSDIIRLRNKT------------LTEDEIATILQSTLKGLEYLHF--- 143

Query: 460 RPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLN 494
              +H  +   +ILL+    AK++  G  +  QL 
Sbjct: 144 MRKIHRDIKAGNILLNTEGHAKLADFG--VAGQLT 176

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 23/149 (15%)

Query: 352 NVYRG--RLNHASVAIKTLNNGLSEEDFQAK---VSFLTAVRHPHLVAVMGC----CSEL 402
           NV+RG  +      AIK  NN         +      L  + H ++V +        +  
Sbjct: 24  NVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRH 83

Query: 403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
           K ++ E+ P G+L   L      Y        L   + + +  +V  G++ L       I
Sbjct: 84  KVLIMEFCPCGSLYTVLEEPSNAYG-------LPESEFLIVLRDVVGGMNHLRE---NGI 133

Query: 463 VHGSLTPSSILL----DRNLVAKISGLGL 487
           VH ++ P +I+     D   V K++  G 
Sbjct: 134 VHRNIKPGNIMRVIGEDGQSVYKLTDFGA 162

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 21/133 (15%)

Query: 362 SVAIKTLN-NGLSEEDFQA---KVSFLTAVRHPHLVA---VMGCCSELKCIVFEYMPNGN 414
            VAIK ++   L+    Q    +V  +  + HP++V    V+     L  ++ EY   G 
Sbjct: 42  EVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTL-YLIMEYASGGE 100

Query: 415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL 474
           + D L    R  +  +R              ++   + + H    + IVH  L   ++LL
Sbjct: 101 VFDYLVAHGRMKEKEAR----------SKFRQIVSAVQYCHQ---KRIVHRDLKAENLLL 147

Query: 475 DRNLVAKISGLGL 487
           D ++  KI+  G 
Sbjct: 148 DADMNIKIADFGF 160

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 50.9 bits (122), Expect = 6e-07
 Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 23/149 (15%)

Query: 352 NVYRG--RLNHASVAIKTLNNGLSEEDFQAK---VSFLTAVRHPHLVAVMGC----CSEL 402
           NV+RG  +      AIK  NN         +      L  + H ++V +        +  
Sbjct: 24  NVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRH 83

Query: 403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
           K ++ E+ P G+L   L      Y        L   + + +  +V  G++ L       I
Sbjct: 84  KVLIMEFCPCGSLYTVLEEPSNAYG-------LPESEFLIVLRDVVGGMNHLRE---NGI 133

Query: 463 VHGSLTPSSILL----DRNLVAKISGLGL 487
           VH ++ P +I+     D   V K++  G 
Sbjct: 134 VHRNIKPGNIMRVIGEDGQSVYKLTDFGA 162

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 50.7 bits (121), Expect = 7e-07
 Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 12/150 (8%)

Query: 340 ERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCC 399
             +       W                 L++    +    K+  +      + V  +   
Sbjct: 71  NAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPS 130

Query: 400 SELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHST 457
           S      I  +     NL+D +   + + ++      L          ++   + FLHS 
Sbjct: 131 SPKVYLYIQMQLCRKENLKDWM-NRRCSLEDREHGVCLHIF------IQIAEAVEFLHS- 182

Query: 458 EPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
             + ++H  L PS+I    + V K+   GL
Sbjct: 183 --KGLMHRDLKPSNIFFTMDDVVKVGDFGL 210

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 50.9 bits (122), Expect = 7e-07
 Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 33/142 (23%)

Query: 353 VYRGRLNHAS---VAIK--TLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELKC--I 405
           V+R   +  +    A+K   L     EE     +     +  P +V + G   E     I
Sbjct: 74  VHRM-KDKQTGFQCAVKKVRLEVFRVEE-----LVACAGLSSPRIVPLYGAVREGPWVNI 127

Query: 406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAH---EVCLGLSFLHSTEPRPI 462
             E +  G+L   +             + +  L      +   +   GL +LH+   R I
Sbjct: 128 FMELLEGGSLGQLI-------------KQMGCLPEDRALYYLGQALEGLEYLHT---RRI 171

Query: 463 VHGSLTPSSILLDRN-LVAKIS 483
           +HG +   ++LL  +   A + 
Sbjct: 172 LHGDVKADNVLLSSDGSRAALC 193

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 50.7 bits (121), Expect = 9e-07
 Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 24/178 (13%)

Query: 329 EDIRLATEDFSERFRLKCAGDWTNVYRGRLNHAS-------VAIKTLNNGLSEEDFQAK- 380
            + +L ++       L   G +  VY       +         +K        E +    
Sbjct: 58  TEFQLGSKLVYVH-HLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQ 116

Query: 381 -VSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRW 437
            +  L        +             +V E    G L + +     N    +  + +  
Sbjct: 117 LMERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAI-----NLYKNTPEKVMPQ 171

Query: 438 LDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGL----GLNICD 491
              I  A  +   +  +H  E   I+HG + P + +L    + +        GL + D
Sbjct: 172 GLVISFAMRMLYMIEQVHDCE---IIHGDIKPDNFILGNGFLEQDDEDDLSAGLALID 226

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 41/180 (22%), Positives = 71/180 (39%), Gaps = 34/180 (18%)

Query: 329 EDIRLATEDFSERFRLKC---AGDWTNVYRGR--LNHASVAIKTLNNGLSE---EDFQAK 380
             ++    D  E F        G +  V++G        VAIK ++   +E   ED Q +
Sbjct: 11  PGMQNLKADPEELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQE 70

Query: 381 VSFLTAVRHPHLVAVMGC---CSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRW 437
           ++ L+    P++    G     ++L  I+ EY+  G+  D L                  
Sbjct: 71  ITVLSQCDSPYVTKYYGSYLKDTKL-WIIMEYLGGGSALD-LLEPGP------------- 115

Query: 438 LDRIHIA---HEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLN 494
           LD   IA    E+  GL +LHS      +H  +  +++LL  +   K++  G  +  QL 
Sbjct: 116 LDETQIATILREILKGLDYLHS---EKKIHRDIKAANVLLSEHGEVKLADFG--VAGQLT 170

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 34/145 (23%), Positives = 55/145 (37%), Gaps = 22/145 (15%)

Query: 351 TNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSELKC--IVF 407
           T VYRG  ++  VA+K +           +V  L     HP+++       + +   I  
Sbjct: 39  TIVYRGMFDNRDVAVKRILPE-CFSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAI 97

Query: 408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSL 467
           E      L++ +      +           L+ I +  +   GL+ LHS     IVH  L
Sbjct: 98  ELCA-ATLQEYVEQKDFAHLG---------LEPITLLQQTTSGLAHLHS---LNIVHRDL 144

Query: 468 TPSSILL-----DRNLVAKISGLGL 487
            P +IL+        + A IS  GL
Sbjct: 145 KPHNILISMPNAHGKIKAMISDFGL 169

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 22/149 (14%)

Query: 353 VY--RGRLNHASVAIK--TLNNGLSEEDFQAKVSFLTAVR-HPHLVAVMGCCSELK---- 403
           VY  +   +    A+K    N          +V F+  +  HP++V      S  K    
Sbjct: 44  VYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESD 103

Query: 404 -----CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTE 458
                 ++   +  G L + L     +    S    L+        ++ C  +  +H  +
Sbjct: 104 TGQAEFLLLTELCKGQLVEFL-KKMESRGPLSCDTVLKIF------YQTCRAVQHMHRQK 156

Query: 459 PRPIVHGSLTPSSILLDRNLVAKISGLGL 487
           P PI+H  L   ++LL      K+   G 
Sbjct: 157 P-PIIHRDLKVENLLLSNQGTIKLCDFGS 184

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 24/145 (16%)

Query: 353 VYRGR--LNHASVAIKTLN-NGLSEEDFQAKV----SFLTAVRHPHLVA---VMGCCSEL 402
           V  G+  L    VA+K LN   +   D   K+      L   RHPH++    V+   S++
Sbjct: 32  VKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDI 91

Query: 403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             +V EY+  G L D +  + R         + R         ++  G+ + H      +
Sbjct: 92  -FMVMEYVSGGELFDYICKNGR----LDEKESRRLF------QQILSGVDYCHR---HMV 137

Query: 463 VHGSLTPSSILLDRNLVAKISGLGL 487
           VH  L P ++LLD ++ AKI+  GL
Sbjct: 138 VHRDLKPENVLLDAHMNAKIADFGL 162

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 36/147 (24%), Positives = 56/147 (38%), Gaps = 24/147 (16%)

Query: 353 VYRGR--LNHASVAIKTLNNG--LSEEDFQAKV----SFLTAVRHPH---LVAVMGCCSE 401
           V            A+K L         + +A V      L  +RH +   LV V+    +
Sbjct: 21  VKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEK 80

Query: 402 LK-CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPR 460
            K  +V EY   G    ++  S    K     +A  +        ++  GL +LHS   +
Sbjct: 81  QKMYMVMEYCVCG--MQEMLDSVPE-KRFPVCQAHGYF------CQLIDGLEYLHS---Q 128

Query: 461 PIVHGSLTPSSILLDRNLVAKISGLGL 487
            IVH  + P ++LL      KIS LG+
Sbjct: 129 GIVHKDIKPGNLLLTTGGTLKISALGV 155

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 48.9 bits (116), Expect = 3e-06
 Identities = 18/175 (10%), Positives = 39/175 (22%), Gaps = 42/175 (24%)

Query: 348 GDWTNVYRGR--LNHASVAIKTL-----NNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCS 400
           GD + V+  R        A+K       N+    E           +             
Sbjct: 73  GDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRR 132

Query: 401 ELK----------------------------CIVFEYMPNGNLRDKLFTSQRNYKNCSRA 432
            L                              ++     + +L                 
Sbjct: 133 LLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAA-SVDLELLF---STLDFVYVFR 188

Query: 433 RALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
                L    +  ++    + L S   + +VHG  TP ++ +  +    +  +  
Sbjct: 189 GDEGILALHILTAQLIRLAANLQS---KGLVHGHFTPDNLFIMPDGRLMLGDVSA 240

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 32/151 (21%), Positives = 59/151 (39%), Gaps = 24/151 (15%)

Query: 353 VYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSELKC--IVFEY 409
           V++G      VA+K +      +    ++  LT    HP+++      +  +   I  E 
Sbjct: 32  VFQGSFQGRPVAVKRMLID-FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALEL 90

Query: 410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTP 469
             N NL+D +   +    +    +  +  + I +  ++  G++ LHS     I+H  L P
Sbjct: 91  C-NLNLQDLV---ESKNVSDENLKLQKEYNPISLLRQIASGVAHLHS---LKIIHRDLKP 143

Query: 470 SSILLD-------------RNLVAKISGLGL 487
            +IL+               NL   IS  GL
Sbjct: 144 QNILVSTSSRFTADQQTGAENLRILISDFGL 174

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 48.5 bits (115), Expect = 4e-06
 Identities = 21/129 (16%), Positives = 39/129 (30%), Gaps = 15/129 (11%)

Query: 365 IKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCS--ELKCIVFEYM----PNGNLRDK 418
           IK          F      +   +   ++ V        +    F Y           + 
Sbjct: 133 IKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEV 192

Query: 419 LFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL 478
           L +    +K+           R+ +  +V   L+ LH      +VH  L P  I+LD+  
Sbjct: 193 LLSHSSTHKSLVHHA------RLQLTLQVIRLLASLHH---YGLVHTYLRPVDIVLDQRG 243

Query: 479 VAKISGLGL 487
              ++G   
Sbjct: 244 GVFLTGFEH 252

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 31/157 (19%)

Query: 353 VYRGRLNHAS--VAIKTLN-NGLSEEDFQAKVSFL-TAVRHPHLVAVMGC-------CSE 401
           VY+GR        AIK ++  G  EE+ + +++ L     H ++    G          +
Sbjct: 40  VYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMD 99

Query: 402 LKC-IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIA---HEVCLGLSFLHST 457
            +  +V E+   G++ D +           +      L    IA    E+  GLS LH  
Sbjct: 100 DQLWLVMEFCGAGSVTDLI-----------KNTKGNTLKEEWIAYICREILRGLSHLHQH 148

Query: 458 EPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLN 494
           +   ++H  +   ++LL  N   K+   G  +  QL+
Sbjct: 149 K---VIHRDIKGQNVLLTENAEVKLVDFG--VSAQLD 180

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 47.9 bits (114), Expect = 8e-06
 Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 13/107 (12%)

Query: 384 LTAVRHPHLVAVMGCCSELK---CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDR 440
           L  V    +V+ +    E K   C+V   M  G++R  ++    +       RA      
Sbjct: 239 LAKVHSRFIVS-LAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRA-----I 292

Query: 441 IHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
            + A ++  GL  LH    R I++  L P ++LLD +   +IS LGL
Sbjct: 293 FYTA-QIVSGLEHLHQ---RNIIYRDLKPENVLLDDDGNVRISDLGL 335

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 38/156 (24%), Positives = 60/156 (38%), Gaps = 30/156 (19%)

Query: 353 VYRGR--LNHASVAIKTLNNGLSE-----EDFQAKVSFLTAVRHPHLVAVMGCCSELKC- 404
           VY  R   N   VAIK ++    +     +D   +V FL  +RHP+ +   GC       
Sbjct: 70  VYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTA 129

Query: 405 -IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIA---HEVCLGLSFLHSTEPR 460
            +V EY   G+  D L   ++             L  + IA   H    GL++LHS    
Sbjct: 130 WLVMEYCL-GSASDLLEVHKKP------------LQEVEIAAVTHGALQGLAYLHS---H 173

Query: 461 PIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVR 496
            ++H  +   +ILL    + K+   G      +   
Sbjct: 174 NMIHRDVKAGNILLSEPGLVKLGDFG--SASIMAPA 207

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 25/145 (17%)

Query: 353 VYRGR--LNHASVAIKTLN-NGLSEEDFQAKV----SFLTAVRHPHLVA---VMGCCSEL 402
           V           VA+K ++   L + D   +V    S+L  +RHPH++    V+   +++
Sbjct: 25  VKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDI 84

Query: 403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             +V EY   G L D +   +R          +   +      ++   + + H      I
Sbjct: 85  -VMVIEYA-GGELFDYIVEKKR----------MTEDEGRRFFQQIICAIEYCHR---HKI 129

Query: 463 VHGSLTPSSILLDRNLVAKISGLGL 487
           VH  L P ++LLD NL  KI+  GL
Sbjct: 130 VHRDLKPENLLLDDNLNVKIADFGL 154

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 22/143 (15%)

Query: 353 VYRGR--LNHASVAIKTLN-NGLSEEDFQAK--VSFLTAVRHPHLVA---VMGCCSELKC 404
           V      +   +VA+K ++     +     K  +     + H ++V         +    
Sbjct: 23  VQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQ-Y 81

Query: 405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVH 464
           +  EY   G L D++              A R+  ++ +A     G+ +LH      I H
Sbjct: 82  LFLEYCSGGELFDRIEPDIG----MPEPDAQRFFHQL-MA-----GVVYLHG---IGITH 128

Query: 465 GSLTPSSILLDRNLVAKISGLGL 487
             + P ++LLD     KIS  GL
Sbjct: 129 RDIKPENLLLDERDNLKISDFGL 151

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 40/195 (20%), Positives = 75/195 (38%), Gaps = 50/195 (25%)

Query: 353 VYRGRLNHAS--VAIKTLNNGLSEEDFQAKV---SFLTAVRHPHLVAVMGC-CSELKC-I 405
           V++     +   +A K ++  +        +     L     P++V   G   S+ +  I
Sbjct: 49  VFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISI 108

Query: 406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRI--HIAHEVCLGLSFLHSTEPRPIV 463
             E+M  G+L D++       K     +A R  ++I   ++  V  GL++L       I+
Sbjct: 109 CMEHMDGGSL-DQV------LK-----KAGRIPEQILGKVSIAVIKGLTYLREK--HKIM 154

Query: 464 HGSLTPSSILLDRNLVAKISGLGLNICDQL-------------------------NVRSD 498
           H  + PS+IL++     K+   G  +  QL                         +V+SD
Sbjct: 155 HRDVKPSNILVNSRGEIKLCDFG--VSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSD 212

Query: 499 IRAFGTLLLHLLTGR 513
           I + G  L+ +  GR
Sbjct: 213 IWSMGLSLVEMAVGR 227

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 22/143 (15%)

Query: 353 VYRGR--LNHASVAIKTLNNG-LSEEDFQAK--VSFLTAVRHPHLVA---VMGCCSELKC 404
           V      +   +VA+K ++     +     K  +     + H ++V         +    
Sbjct: 23  VQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQ-Y 81

Query: 405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVH 464
           +  EY   G L D++              A R+  ++ +A     G+ +LH      I H
Sbjct: 82  LFLEYCSGGELFDRIEPDIG----MPEPDAQRFFHQL-MA-----GVVYLHG---IGITH 128

Query: 465 GSLTPSSILLDRNLVAKISGLGL 487
             + P ++LLD     KIS  GL
Sbjct: 129 RDIKPENLLLDERDNLKISDFGL 151

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 610 SVFICPIFQEVMKTPHVA-ADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHT 666
           S  +C I  +V + P ++      +E   +E+++       P+TN  L  + +     
Sbjct: 2   SHMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYV-KDTGNDPITNEPLSIEEIVEIVP 58

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 34/150 (22%)

Query: 353 VYRGR--LNHASVAIKTLN----------NGLSEEDFQAKVSFLTAVRHPHLVAVMGC-- 398
           V++ R   +    A+K               L+E     KV      +HP  V +     
Sbjct: 73  VFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVG-----QHPCCVRLEQAWE 127

Query: 399 -CSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHST 457
               L  +  E     +L+      +    +   A+   +L       +  L L+ LHS 
Sbjct: 128 EGGIL-YLQTELC-GPSLQQHC---EAWGASLPEAQVWGYL------RDTLLALAHLHS- 175

Query: 458 EPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
             + +VH  + P++I L      K+   GL
Sbjct: 176 --QGLVHLDVKPANIFLGPRGRCKLGDFGL 203

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 20/126 (15%)

Query: 384 LTAVRHPHLVAVMGCCSELK---CIVFEYMPNGNLRDKLFTSQRNYKNC-SRARALRWLD 439
           L  V    +V+ +    E K   C+V   M  G+L    F      +     ARA     
Sbjct: 238 LEKVNSRFVVS-LAYAYETKDALCLVLTLMNGGDL---KFHIYHMGQAGFPEARA----- 288

Query: 440 RIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVRSDI 499
             + A E+C GL  LH      IV+  L P +ILLD +   +IS LGL     +     I
Sbjct: 289 VFYAA-EICCGLEDLHR---ERIVYRDLKPENILLDDHGHIRISDLGL--AVHVPEGQTI 342

Query: 500 RAF-GT 504
           +   GT
Sbjct: 343 KGRVGT 348

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 45.4 bits (107), Expect = 5e-05
 Identities = 21/140 (15%), Positives = 51/140 (36%), Gaps = 15/140 (10%)

Query: 357 RLNHASVAIKTLNNGLSEEDFQAKVSFLTA---VRHPHLVAV--MGCCSELKCIVFEYM- 410
           ++    + ++ L    +++  +  + F+     V+ P    +  +        ++  +  
Sbjct: 124 QMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFL 183

Query: 411 ---PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSL 467
                 NL+        +    S  ++L    R+ +  +V   L+ LH      +VH  L
Sbjct: 184 YPRMQSNLQTFGEVLLSH---SSTHKSLVHHARLQLTLQVIRLLASLHH---YGLVHTYL 237

Query: 468 TPSSILLDRNLVAKISGLGL 487
            P  I+LD+     ++G   
Sbjct: 238 RPVDIVLDQRGGVFLTGFEH 257

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 44.9 bits (107), Expect = 5e-05
 Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 27/148 (18%)

Query: 353 VYRGR--LNHASVAIKTLNNGLSEED---FQA--KVSFLTAVRHPHLVAVMGCCSELKCI 405
           VY+G        VA+K +   L  E+     A  ++S +  ++H ++V +         +
Sbjct: 21  VYKGLNKTTGVYVALKEVK--LDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKL 78

Query: 406 --VFEYMPNGNLRD-KLFTSQRNYKNCSRARALRWLDRIHIA---HEVCLGLSFLHSTEP 459
             VFE+M N    D K +   R   N  R      L+   +     ++  GL+F H    
Sbjct: 79  TLVFEFMDN----DLKKYMDSRTVGNTPRG-----LELNLVKYFQWQLLQGLAFCHE--- 126

Query: 460 RPIVHGSLTPSSILLDRNLVAKISGLGL 487
             I+H  L P ++L+++    K+   GL
Sbjct: 127 NKILHRDLKPQNLLINKRGQLKLGDFGL 154

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 22/143 (15%)

Query: 353 VYRGR--LNHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVA---VMGCCSELKCIV 406
               R  L    VA+K +  G   +E+ Q ++    ++RHP++V    V+   + L  I+
Sbjct: 36  ARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSLRHPNIVRFKEVILTPTHL-AII 94

Query: 407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGS 466
            EY   G L +++  + R     S   A  +        ++  G+S+ HS     I H  
Sbjct: 95  MEYASGGELYERICNAGR----FSEDEARFFF------QQLLSGVSYCHS---MQICHRD 141

Query: 467 LTPSSILLDRNLVA--KISGLGL 487
           L   + LLD +     KI   G 
Sbjct: 142 LKLENTLLDGSPAPRLKICDFGY 164

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 24/111 (21%)

Query: 384 LTAVRHPHLVAVMGC--CSELKCIVFEYMPNGNL-----RDKLFTSQRNYKNCSRARALR 436
           L   RHP L A+       +  C V EY   G L     R+++F+  R            
Sbjct: 202 LQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRA----------- 250

Query: 437 WLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
              R + A E+   L +LHS   + +V+  L   +++LD++   KI+  GL
Sbjct: 251 ---RFYGA-EIVSALDYLHS--EKNVVYRDLKLENLMLDKDGHIKITDFGL 295

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 35/166 (21%), Positives = 68/166 (40%), Gaps = 22/166 (13%)

Query: 335 TEDFSERFRLKC---AGDWTNVYRG--RLNHASVAIKTLN---NGLSEEDFQAKVSFLTA 386
                + F  K    +G + +V+    R +     IKT+N   + +  E  +A++  L +
Sbjct: 17  QGTIDDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKS 76

Query: 387 VRHPHLVAVMGCCSELKC--IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIA 444
           + HP+++ +     +     IV E    G L +++ ++Q   K  S            + 
Sbjct: 77  LDHPNIIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYV------AELM 130

Query: 445 HEVCLGLSFLHSTEPRPIVHGSLTPSSILL---DRNLVAKISGLGL 487
            ++   L++ HS   + +VH  L P +IL      +   KI   GL
Sbjct: 131 KQMMNALAYFHS---QHVVHKDLKPENILFQDTSPHSPIKIIDFGL 173

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 19/139 (13%)

Query: 353 VYRGRLNHAS---VAIK--TLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELKC--I 405
           VY G  + ++   +AIK     +    +    +++    ++H ++V  +G  SE     I
Sbjct: 38  VYAG-RDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKI 96

Query: 406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHG 465
             E +P G+L   L   +  +                   ++  GL +LH      IVH 
Sbjct: 97  FMEQVPGGSLSALL---RSKWGPLKDNEQT----IGFYTKQILEGLKYLHD---NQIVHR 146

Query: 466 SLTPSSILLD-RNLVAKIS 483
            +   ++L++  + V KIS
Sbjct: 147 DIKGDNVLINTYSGVLKIS 165

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 32/199 (16%), Positives = 64/199 (32%), Gaps = 49/199 (24%)

Query: 335 TEDFSERFRLKC---AGDWTNVYRG--RLNHASVAIKTLN-------NGLSEEDFQAKVS 382
             +  +++ LK     G +  V         A  AIK +N       N    E  + +V 
Sbjct: 21  LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVR 80

Query: 383 FLTAVRHPHLVAVMGCCSELKC--IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDR 440
            +  + HP++  +     + +   +V E    G+L DKL     +         ++    
Sbjct: 81  LMKKLHHPNIARLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQIC 140

Query: 441 I------------------------------HIAHEVCLGLSFLHSTEPRPIVHGSLTPS 470
                                          +I  ++   L +LH+   + I H  + P 
Sbjct: 141 PCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHN---QGICHRDIKPE 197

Query: 471 SILL--DRNLVAKISGLGL 487
           + L   +++   K+   GL
Sbjct: 198 NFLFSTNKSFEIKLVDFGL 216

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 25/145 (17%)

Query: 353 VYRGR--LNHASVAIKTLNNGLSEEDFQAK------VSFLTAVRHPHLVAVMGCCSELKC 404
           V++ R       VAIK      SE+D   K      +  L  ++HP+LV ++      + 
Sbjct: 19  VFKCRNRDTGQIVAIKKFL--ESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRR 76

Query: 405 I--VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
           +  VFEY  +  +        +        ++        I  +    ++F H       
Sbjct: 77  LHLVFEYCDH-TVL-HELDRYQRGVPEHLVKS--------ITWQTLQAVNFCHK---HNC 123

Query: 463 VHGSLTPSSILLDRNLVAKISGLGL 487
           +H  + P +IL+ ++ V K+   G 
Sbjct: 124 IHRDVKPENILITKHSVIKLCDFGF 148

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 31/184 (16%), Positives = 65/184 (35%), Gaps = 32/184 (17%)

Query: 323 FREYAAEDIRLATEDFSERFRLKC---AGDWTNVYRG--RLNHASVAIKTLN-------- 369
           F +   +D  +  +   + + +     +G    V     R     VAI+ ++        
Sbjct: 118 FFDLTVDDQSVYPKALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGS 177

Query: 370 --NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELKC-IVFEYMPNGNLRDKLFTSQRNY 426
                   + + ++  L  + HP ++ +          IV E M  G L DK+       
Sbjct: 178 AREADPALNVETEIEILKKLNHPCIIKIKNFFDAEDYYIVLELMEGGELFDKV--VGNKR 235

Query: 427 KNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL---DRNLVAKIS 483
              +  +           +++ L + +LH      I+H  L P ++LL   + + + KI+
Sbjct: 236 LKEATCK--------LYFYQMLLAVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKIT 284

Query: 484 GLGL 487
             G 
Sbjct: 285 DFGH 288

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 29/150 (19%)

Query: 353 VYRGRLNHAS--VAIKTLNNGLSEEDFQA-----KVSFLTAVRHPHLVAVMGCC-SELKC 404
           V +     +   +A+K + + + E++ +       V  + +   P++V   G    E  C
Sbjct: 38  VNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVV-MRSSDCPYIVQFYGALFREGDC 96

Query: 405 -IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRI--HIAHEVCLGLSFLHSTEPRP 461
            I  E M + +  DK       YK           + I   I       L+ L       
Sbjct: 97  WICMELM-STSF-DKF------YKYVYSVLDDVIPEEILGKITLATVKALNHLKEN--LK 146

Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLNICD 491
           I+H  + PS+ILLDR+   K       +CD
Sbjct: 147 IIHRDIKPSNILLDRSGNIK-------LCD 169

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 29/149 (19%), Positives = 56/149 (37%), Gaps = 28/149 (18%)

Query: 353 VYRGRLNHAS--VAIKTLNNGLSEEDFQA-----KVSFLTAVRHPHLVAVMGCC---SEL 402
           V + R   +   +A+K +   ++ ++ +       +S +  V  P  V   G      ++
Sbjct: 23  VEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDIS-MRTVDCPFTVTFYGALFREGDV 81

Query: 403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             I  E M + +L DK +    +         L       IA  +   L  LHS     +
Sbjct: 82  -WICMELM-DTSL-DKFYKQVIDKGQTIPEDILG-----KIAVSIVKALEHLHSK--LSV 131

Query: 463 VHGSLTPSSILLDRNLVAKISGLGLNICD 491
           +H  + PS++L++     K       +CD
Sbjct: 132 IHRDVKPSNVLINALGQVK-------MCD 153

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 30/143 (20%), Positives = 60/143 (41%), Gaps = 20/143 (13%)

Query: 353 VYRGR--LNHASVAIKTLNNGLSEEDFQA----KVSFLTAVRHPHLVAVMGCCSELKCI- 405
           VY+ R  L    VA+K +      E   +    ++S L  + HP++V ++        + 
Sbjct: 19  VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLY 78

Query: 406 -VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVH 464
            VFE++   +L+  +  S          ++           ++  GL+F HS     ++H
Sbjct: 79  LVFEFLHQ-DLKKFMDASALTGIPLPLIKSY--------LFQLLQGLAFCHS---HRVLH 126

Query: 465 GSLTPSSILLDRNLVAKISGLGL 487
             L P ++L++     K++  GL
Sbjct: 127 RDLKPQNLLINTEGAIKLADFGL 149

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 25/111 (22%)

Query: 384 LTAVRHPHLVAVMGC--CSELKCIVFEYMPNGNL-----RDKLFTSQRNYKNCSRARALR 436
           L   RHP L A+       +  C V EY   G L     R+++FT +R            
Sbjct: 59  LQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERA----------- 107

Query: 437 WLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
              R + A E+   L +LHS   R +V+  +   +++LD++   KI+  GL
Sbjct: 108 ---RFYGA-EIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGL 151

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 23/149 (15%)

Query: 353 VYRG--RLNHASVAIKTLN-------NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           V R   R      A+K ++        GLS ED + + S    ++HPH+V ++   S   
Sbjct: 40  VRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDG 99

Query: 404 C--IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              +VFE+M   +L  ++          S A A       H   ++   L + H      
Sbjct: 100 MLYMVFEFMDGADLCFEIVKRADAGFVYSEAVA------SHYMRQILEALRYCHD---NN 150

Query: 462 IVHGSLTPSSILL---DRNLVAKISGLGL 487
           I+H  + P  +LL   + +   K+ G G+
Sbjct: 151 IIHRDVKPHCVLLASKENSAPVKLGGFGV 179

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 24/139 (17%), Positives = 47/139 (33%), Gaps = 22/139 (15%)

Query: 353 VYRGRLNHAS--VAIKTLNNGLSEEDFQA-----KVSFLTAVRHPHLVAVMGCC-SELKC 404
           V++ R       +A+K +    ++E+ +       V  L +   P++V   G   +    
Sbjct: 41  VWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVV-LKSHDCPYIVQCFGTFITNTDV 99

Query: 405 -IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
            I  E M     + K        +               +   +   L +L       ++
Sbjct: 100 FIAMELMGTCAEKLKKRMQGPIPERILG----------KMTVAIVKALYYLKEK--HGVI 147

Query: 464 HGSLTPSSILLDRNLVAKI 482
           H  + PS+ILLD     K+
Sbjct: 148 HRDVKPSNILLDERGQIKL 166

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 25/145 (17%)

Query: 353 VYRGR--LNHASVAIKTLNNGLSEEDFQAK------VSFLTAVRHPHLVAVMGCCSELKC 404
           V + R       VAIK      S++D   K      +  L  +RH +LV ++  C + K 
Sbjct: 41  VMKCRNKDTGRIVAIKKFL--ESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKR 98

Query: 405 I--VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
              VFE++ +  +         N  +    +   +        ++  G+ F HS     I
Sbjct: 99  WYLVFEFVDH-TIL-DDLELFPNGLDYQVVQKYLF--------QIINGIGFCHS---HNI 145

Query: 463 VHGSLTPSSILLDRNLVAKISGLGL 487
           +H  + P +IL+ ++ V K+   G 
Sbjct: 146 IHRDIKPENILVSQSGVVKLCDFGF 170

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 41.8 bits (99), Expect = 5e-04
 Identities = 32/167 (19%), Positives = 68/167 (40%), Gaps = 27/167 (16%)

Query: 335 TEDFSERFRLKC---AGDWTNVYRG--RLNHASVAIKTLN----NGLSEEDFQAKVSFLT 385
           +  FS+ + +K     G ++ V R   +      A K +N    +    +  + +     
Sbjct: 1   STKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICR 60

Query: 386 AVRHPHLVAVMGCCSELKC--IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHI 443
            ++HP++V +     E     +VF+ +  G L + +    R + + + A         H 
Sbjct: 61  KLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDI--VAREFYSEADAS--------HC 110

Query: 444 AHEVCLGLSFLHSTEPRPIVHGSLTPSSILL---DRNLVAKISGLGL 487
             ++   +++ HS     IVH +L P ++LL    +    K++  GL
Sbjct: 111 IQQILESIAYCHS---NGIVHRNLKPENLLLASKAKGAAVKLADFGL 154

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 41.4 bits (98), Expect = 6e-04
 Identities = 32/143 (22%), Positives = 63/143 (44%), Gaps = 21/143 (14%)

Query: 353 VYRGR--LNHASVAIKTLNNGLSEEDFQA----KVSFLTAVRHPHLVAVMGCCSELKCI- 405
           V++ +    H  VA+K +     +E   +    ++  L  ++H ++V +       K + 
Sbjct: 18  VFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLT 77

Query: 406 -VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVH 464
            VFE+    +L+ K F S     +    ++           ++  GL F HS   R ++H
Sbjct: 78  LVFEFCDQ-DLK-KYFDSCNGDLDPEIVKSF--------LFQLLKGLGFCHS---RNVLH 124

Query: 465 GSLTPSSILLDRNLVAKISGLGL 487
             L P ++L++RN   K++  GL
Sbjct: 125 RDLKPQNLLINRNGELKLANFGL 147

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 41.4 bits (98), Expect = 6e-04
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 15/96 (15%)

Query: 384 LTAVRHPHLVAVMGCC-SELK-CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRI 441
           L+ V HP ++ + G      +  ++ +Y+  G    +LF+  R  +      A     + 
Sbjct: 60  LSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGG----ELFSLLRKSQRFPNPVA-----KF 110

Query: 442 HIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN 477
           + A EVCL L +LHS   + I++  L P +ILLD+N
Sbjct: 111 YAA-EVCLALEYLHS---KDIIYRDLKPENILLDKN 142

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 41.4 bits (98), Expect = 6e-04
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 15/96 (15%)

Query: 384 LTAVRHPHLVAVMGCC-SELK-CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRI 441
           ++ + HP  V +      + K      Y  NG    +L    R   +           R 
Sbjct: 84  MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNG----ELLKYIRKIGSFDETCT-----RF 134

Query: 442 HIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN 477
           + A E+   L +LH    + I+H  L P +ILL+ +
Sbjct: 135 YTA-EIVSALEYLHG---KGIIHRDLKPENILLNED 166

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 15/96 (15%)

Query: 384 LTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRI 441
           L AV  P LV +     +     +V EY+  G    ++F+  R     S   A     R 
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGG----EMFSHLRRIGRFSEPHA-----RF 145

Query: 442 HIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN 477
           + A ++ L   +LHS +   +++  L P ++L+D+ 
Sbjct: 146 YAA-QIVLTFEYLHSLD---LIYRDLKPENLLIDQQ 177

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 20/119 (16%)

Query: 372 LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK---CIVFEYMPNGNLRDKLFTSQRNYKN 428
           L+E    + VS       P +V  M            + + M  G+L          +  
Sbjct: 237 LNERIMLSLVS---TGDCPFIVC-MSYAFHTPDKLSFILDLMNGGDL----HYHLSQHGV 288

Query: 429 CSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
            S A       R + A E+ LGL  +H+   R +V+  L P++ILLD +   +IS LGL
Sbjct: 289 FSEADM-----RFYAA-EIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGL 338

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 23/127 (18%)

Query: 384 LTAVRHPHLVAVMGC---CSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDR 440
           +     P +V +         L  +V EYMP G+L         NY       A     R
Sbjct: 123 MAFANSPWVVQLFYAFQDDRYL-YMVMEYMPGGDL----VNLMSNYD-VPEKWA-----R 171

Query: 441 IHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVRSDIR 500
            + A EV L L  +HS      +H  + P ++LLD++   K++  G   C ++N    +R
Sbjct: 172 FYTA-EVVLALDAIHSMG---FIHRDVKPDNMLLDKSGHLKLADFGT--CMKMNKEGMVR 225

Query: 501 AF---GT 504
                GT
Sbjct: 226 CDTAVGT 232

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	683
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.97
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.97
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.97
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.97
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.97
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.92
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.86
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.84
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.77
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.58
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.48
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.47
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.46
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.46
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	99.38
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.23
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.21
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.21
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.12
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	99.06
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	99.04
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.04
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.95
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.69
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.41
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.33
3ats_A	357	Putative uncharacterized protein; hypothetical pro	98.32
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.24
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.23
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	98.19
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	98.16
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	98.15
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.06
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	97.9
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	97.79
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	97.63
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	97.61
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	97.48
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	97.47
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.46
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	97.42
1z6u_A	150	NP95-like ring finger protein isoform B; structura	97.36
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	97.28
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	97.2
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	97.12
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	97.04
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	96.83
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	96.74
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	96.71
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	96.44
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	96.42
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	96.35
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	96.31
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	96.23
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.15
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	96.07
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	96.06
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	96.05
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	96.03
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	95.99
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	95.97
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	95.56
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	95.51
3mes_A	424	Choline kinase; malaria, structural genomics, stru	95.39
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	95.36
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	95.24
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	94.9
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	94.55
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	94.26
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	92.88
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	91.95
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	91.36
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	91.02
4ann_A	215	ESSB; membrane protein, membrane secretion, ESS ty	90.8
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	90.63
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	90.36
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	90.05
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	89.88
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	89.32
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	89.14
2ect_A	78	Ring finger protein 126; metal binding protein, st	88.68
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	88.4
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	88.06
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	87.86
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	87.38
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	86.78
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	85.88
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	84.66
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	84.38
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	84.35
4ano_A	219	ESSB; membrane protein, membrane secretion, ESS ty	83.17
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	82.33

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=2.7e-48  Score=411.95  Aligned_cols=224  Identities=19%  Similarity=0.345  Sum_probs=184.9

Q ss_pred             cccccCCceEEEEEEECCeeEEEEEcCCC-CC---HHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecCCCCchh
Q 005680          343 RLKCAGDWTNVYRGRLNHASVAIKTLNNG-LS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMPNGNLRD  417 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g~~VAvK~l~~~-~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~ggsL~~  417 (683)
                      +.+|+|+||+||+|.+.+ .||||+++.. ..   .+.|.+|+.+|++++|||||+++|+|.+ ..|||||||+||||.+
T Consensus        42 ~~iG~G~fG~Vy~~~~~~-~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~iVmEy~~gGsL~~  120 (307)
T 3omv_A           42 TRIGSGSFGTVYKGKWHG-DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGSSLYK  120 (307)
T ss_dssp             EECCCCSSSEEEEEESSS-EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECCSSCBHHH
T ss_pred             eEEeeCCCcEEEEEEECC-cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEECCeEEEEEEcCCCCCHHH
Confidence            457899999999999865 5999999722 22   3579999999999999999999999966 7899999999999999


Q ss_pred             hhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-------
Q 005680          418 KLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-------  490 (683)
Q Consensus       418 ~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-------  490 (683)
                      +|..         ....++|..++.|+.|||.||.|||+   ++||||||||+||||+.++++||+|||+|+.       
T Consensus       121 ~l~~---------~~~~l~~~~~~~i~~qia~gL~yLH~---~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~  188 (307)
T 3omv_A          121 HLHV---------QETKFQMFQLIDIARQTAQGMDYLHA---KNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGS  188 (307)
T ss_dssp             HHHT---------SCCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCCSSSEEEETTEEEEECCCSSCBC-------
T ss_pred             HHhh---------cCCCCCHHHHHHHHHHHHHHHHHHHH---CCccCCccCHHHEEECCCCcEEEeeccCceecccCCcc
Confidence            9952         34579999999999999999999999   7799999999999999999999999999853       


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHH
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAE  547 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~  547 (683)
                                             +.|+.++|||||||+||||+||++||...................+.....+..+++
T Consensus       189 ~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  268 (307)
T 3omv_A          189 QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPK  268 (307)
T ss_dssp             -----CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTTCCCCCSTTSCTTSCH
T ss_pred             eeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCCcccccccchH
Confidence                                   137889999999999999999999996532210010000011112223345667899


Q ss_pred             HHHHHHHHhhhcCCCccccccHHHHHHHHHHHHH
Q 005680          548 ELAGIALKCLSADQDANRDLRIAGVMKELDEVRK  581 (683)
Q Consensus       548 ~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~  581 (683)
                      .+.+|+.+||+.|  |..|||+.+|+..|+.|+.
T Consensus       269 ~l~~li~~cl~~d--P~~RPs~~ei~~~Le~l~~  300 (307)
T 3omv_A          269 AMKRLVADCVKKV--KEERPLFPQILSSIELLQH  300 (307)
T ss_dssp             HHHHHHHHHTCSS--STTSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCC--HhHCcCHHHHHHHHHHHhc
Confidence            9999999999999  8899999999999998864

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=5.3e-48  Score=410.15  Aligned_cols=237  Identities=23%  Similarity=0.385  Sum_probs=194.1

Q ss_pred             HHHHhhcCccccccccccCCceEEEEEEE-------CCeeEEEEEcCCC---CCHHHHHHHHHHHHhcCCCCccceeccc
Q 005680          330 DIRLATEDFSERFRLKCAGDWTNVYRGRL-------NHASVAIKTLNNG---LSEEDFQAKVSFLTAVRHPHLVAVMGCC  399 (683)
Q Consensus       330 ei~~at~~F~~~~~liG~G~fG~Vykg~~-------~g~~VAvK~l~~~---~~~~~~~~Ev~iL~~l~HpnIV~l~g~~  399 (683)
                      ||..++-.|.   +.+|+|+||.||+|.+       +++.||||+++..   ...+.|.+|+.+|++++|||||+++|+|
T Consensus        22 ei~~~~~~~~---~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~   98 (308)
T 4gt4_A           22 EISLSAVRFM---EELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVV   98 (308)
T ss_dssp             BCCGGGEEEE---EEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cCCHHHCeEe---eEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEE
Confidence            3333444443   3578999999999997       3578999999732   3357899999999999999999999999


Q ss_pred             cc--ceeEEEeecCCCCchhhhhhcccccc------cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCc
Q 005680          400 SE--LKCIVFEYMPNGNLRDKLFTSQRNYK------NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSS  471 (683)
Q Consensus       400 ~~--~~~LV~Ey~~ggsL~~~L~~~~~~~~------~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~N  471 (683)
                      .+  ..+||||||++|||.++|........      .......++|..++.|+.|||.||.|||+   ++||||||||+|
T Consensus        99 ~~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLK~~N  175 (308)
T 4gt4_A           99 TKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSS---HHVVHKDLATRN  175 (308)
T ss_dssp             CSSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGG
T ss_pred             EECCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHh---CCCCCCCccccc
Confidence            76  78999999999999999964321100      00124579999999999999999999999   679999999999


Q ss_pred             ccccCCCcEEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHh
Q 005680          472 ILLDRNLVAKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAM  523 (683)
Q Consensus       472 ILld~~~~~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~  523 (683)
                      |||+.++++||+|||+|+.                           ..|+.++|||||||+||||+| |.+||.....  
T Consensus       176 ILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~--  253 (308)
T 4gt4_A          176 VLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN--  253 (308)
T ss_dssp             EEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCH--
T ss_pred             eEECCCCCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCH--
Confidence            9999999999999999853                           458899999999999999999 8999975322  


Q ss_pred             hhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          524 ALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       524 ~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                         ...+..+..+...+.|..+++.+.+|+.+||+.|  |..|||+.+|++.|+.+
T Consensus       254 ---~~~~~~i~~~~~~~~p~~~~~~~~~li~~C~~~d--P~~RPs~~ei~~~L~a~  304 (308)
T 4gt4_A          254 ---QDVVEMIRNRQVLPCPDDCPAWVYALMIECWNEF--PSRRPRFKDIHSRLRAW  304 (308)
T ss_dssp             ---HHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHTS
T ss_pred             ---HHHHHHHHcCCCCCCcccchHHHHHHHHHHcCCC--hhHCcCHHHHHHHHHhc
Confidence               2334445556666778899999999999999999  88999999999998753

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=5.9e-48  Score=408.16  Aligned_cols=230  Identities=25%  Similarity=0.423  Sum_probs=192.1

Q ss_pred             cccccCCceEEEEEEE-------CCeeEEEEEcCCCC--CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          343 RLKCAGDWTNVYRGRL-------NHASVAIKTLNNGL--SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~-------~g~~VAvK~l~~~~--~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      +.+|+|+||.||+|.+       ++..||||+++...  ..+.|.+|+.+|++++|||||+++|+|.+  ..|||||||+
T Consensus        19 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey~~   98 (299)
T 4asz_A           19 RELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMK   98 (299)
T ss_dssp             EEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEECCT
T ss_pred             eEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEEEEcCC
Confidence            5678999999999986       36789999997432  24679999999999999999999999976  7899999999


Q ss_pred             CCCchhhhhhccccc---ccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCc
Q 005680          412 NGNLRDKLFTSQRNY---KNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN  488 (683)
Q Consensus       412 ggsL~~~L~~~~~~~---~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla  488 (683)
                      ||||.++|.......   ........|+|..++.|+.||+.||.|||+   ++||||||||+||||+.++.+||+|||+|
T Consensus        99 ~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDlKp~NILl~~~~~~Ki~DFGla  175 (299)
T 4asz_A           99 HGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLVGENLLVKIGDFGMS  175 (299)
T ss_dssp             TCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCSCH
T ss_pred             CCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCccCHhhEEECCCCcEEECCcccc
Confidence            999999996532100   000234579999999999999999999999   77999999999999999999999999998


Q ss_pred             cc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCC
Q 005680          489 IC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGI  540 (683)
Q Consensus       489 ~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~  540 (683)
                      +.                           ..|+.++|||||||+||||+| |++||.....     ...+..+..+....
T Consensus       176 ~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~-----~~~~~~i~~~~~~~  250 (299)
T 4asz_A          176 RDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN-----NEVIECITQGRVLQ  250 (299)
T ss_dssp             HHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH-----HHHHHHHHHTCCCC
T ss_pred             eecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCH-----HHHHHHHHcCCCCC
Confidence            52                           468899999999999999999 8999975322     23344555666677


Q ss_pred             CChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          541 WPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       541 ~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      .|..+++++.+|+.+||+.|  |..|||+.+|+..|+.+.+.
T Consensus       251 ~p~~~~~~~~~li~~cl~~d--P~~RPs~~~i~~~L~~~~~~  290 (299)
T 4asz_A          251 RPRTCPQEVYELMLGCWQRE--PHMRKNIKGIHTLLQNLAKA  290 (299)
T ss_dssp             CCTTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHH
T ss_pred             CCccchHHHHHHHHHHcCCC--hhHCcCHHHHHHHHHHHHhc
Confidence            88889999999999999999  88999999999999998754

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=2.5e-47  Score=408.61  Aligned_cols=230  Identities=24%  Similarity=0.384  Sum_probs=190.3

Q ss_pred             cccccCCceEEEEEEE-------CCeeEEEEEcCCCC--CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          343 RLKCAGDWTNVYRGRL-------NHASVAIKTLNNGL--SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~-------~g~~VAvK~l~~~~--~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      +.+|+|+||.||+|.+       ++..||||+++...  ..+.|.+|+.+|++++|||||+++|+|.+  ..|||||||+
T Consensus        47 ~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey~~  126 (329)
T 4aoj_A           47 WELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMR  126 (329)
T ss_dssp             EEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEECCT
T ss_pred             EEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCC
Confidence            4578999999999986       36789999997432  24679999999999999999999999976  7899999999


Q ss_pred             CCCchhhhhhcccccc-----cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          412 NGNLRDKLFTSQRNYK-----NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~-----~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      +|+|.++|........     ......+++|..++.|+.|||.||.|||+   ++||||||||+||||+.++++||+|||
T Consensus       127 ~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLKp~NILl~~~~~~Ki~DFG  203 (329)
T 4aoj_A          127 HGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAG---LHFVHRDLATRNCLVGQGLVVKIGDFG  203 (329)
T ss_dssp             TCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTTEEEECCCC
T ss_pred             CCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhc---CCeecccccHhhEEECCCCcEEEcccc
Confidence            9999999965421100     00124579999999999999999999999   779999999999999999999999999


Q ss_pred             Cccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCC
Q 005680          487 LNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNA  538 (683)
Q Consensus       487 la~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~  538 (683)
                      +|+.                           ..|+.++|||||||+||||+| |++||.....     ...+..+..+..
T Consensus       204 la~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~-----~~~~~~i~~g~~  278 (329)
T 4aoj_A          204 MSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSN-----TEAIDCITQGRE  278 (329)
T ss_dssp             ----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCH-----HHHHHHHHHTCC
T ss_pred             cceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCH-----HHHHHHHHcCCC
Confidence            9853                           357899999999999999999 8999975322     233444555666


Q ss_pred             CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          539 GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       539 ~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      ...|..+++++.+|+.+||+.|  |..|||+.+|++.|+.+.+.
T Consensus       279 ~~~p~~~~~~~~~li~~cl~~d--P~~RPs~~ei~~~L~~l~~~  320 (329)
T 4aoj_A          279 LERPRACPPEVYAIMRGCWQRE--PQQRHSIKDVHARLQALAQA  320 (329)
T ss_dssp             CCCCTTCCHHHHHHHHHHCCSS--TTTSCCHHHHHHHHHHHHHS
T ss_pred             CCCcccccHHHHHHHHHHcCcC--hhHCcCHHHHHHHHHHHhhC
Confidence            7788889999999999999999  88999999999999998753

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=5.2e-46  Score=400.55  Aligned_cols=221  Identities=18%  Similarity=0.325  Sum_probs=183.1

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVF  407 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~  407 (683)
                      ++| ...+.+|+|+||.||+|+.  +|+.||||++....    ..+.+.+|+.+|++|+|||||++++++.+  ..||||
T Consensus        24 e~Y-~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVm  102 (350)
T 4b9d_A           24 EKY-VRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVM  102 (350)
T ss_dssp             CCE-EEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             cce-EEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEE
Confidence            344 3346778999999999998  68999999997322    23578999999999999999999999976  789999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCC
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL  487 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGl  487 (683)
                      |||+||+|.++|...        ....+++..++.|+.||+.||.|||+   ++||||||||+||||+.+|.+||+|||+
T Consensus       103 Ey~~gg~L~~~i~~~--------~~~~~~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGl  171 (350)
T 4b9d_A          103 DYCEGGDLFKRINAQ--------KGVLFQEDQILDWFVQICLALKHVHD---RKILHRDIKSQNIFLTKDGTVQLGDFGI  171 (350)
T ss_dssp             ECCTTCBHHHHHHHT--------TTCCCCHHHHHHHHHHHHHHHHHHHH---TTCEETTCCGGGEEECTTCCEEECSTTE
T ss_pred             eCCCCCcHHHHHHHc--------CCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCCHHHEEECCCCCEEEccccc
Confidence            999999999999532        34568999999999999999999999   7799999999999999999999999999


Q ss_pred             ccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCC
Q 005680          488 NIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWP  542 (683)
Q Consensus       488 a~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p  542 (683)
                      |+.                         ..|+.++||||||||||||+||++||.....     ...+..++....+..+
T Consensus       172 a~~~~~~~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~-----~~~~~~i~~~~~~~~~  246 (350)
T 4b9d_A          172 ARVLNSTVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSM-----KNLVLKIISGSFPPVS  246 (350)
T ss_dssp             ESCCCHHHHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH-----HHHHHHHHHTCCCCCC
T ss_pred             ceeecCCcccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH-----HHHHHHHHcCCCCCCC
Confidence            864                         3589999999999999999999999975322     2344455665556667


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ..+++++.+||.+||+.|  |.+|||+.++++.
T Consensus       247 ~~~s~~~~~li~~~L~~d--P~~R~s~~e~l~h  277 (350)
T 4b9d_A          247 LHYSYDLRSLVSQLFKRN--PRDRPSVNSILEK  277 (350)
T ss_dssp             TTSCHHHHHHHHHHTCSS--GGGSCCHHHHHTS
T ss_pred             ccCCHHHHHHHHHHccCC--hhHCcCHHHHhcC
Confidence            788999999999999999  8899999999864

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=4.1e-46  Score=392.25  Aligned_cols=220  Identities=22%  Similarity=0.327  Sum_probs=179.7

Q ss_pred             ccccccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc------ceeE
Q 005680          338 FSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE------LKCI  405 (683)
Q Consensus       338 F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~------~~~L  405 (683)
                      |....+.+|+|+||.||+|.+  ++..||||++...    ...+.|.+|+.+|++++|||||+++++|.+      ..||
T Consensus        27 ~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~l  106 (290)
T 3fpq_A           27 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL  106 (290)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEE
T ss_pred             eEEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEE
Confidence            333335689999999999998  5889999998622    123578999999999999999999999853      4799


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC-CCcEEEec
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR-NLVAKISG  484 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~-~~~~KL~D  484 (683)
                      |||||+||+|.++|.          ....+++..+..|+.||+.||.|||+.+ .+||||||||+||||+. +|.+||+|
T Consensus       107 vmEy~~gg~L~~~l~----------~~~~l~~~~~~~~~~qi~~aL~ylH~~~-~~IiHRDlKp~NILl~~~~g~vKl~D  175 (290)
T 3fpq_A          107 VTELMTSGTLKTYLK----------RFKVMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGD  175 (290)
T ss_dssp             EEECCCSCBHHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCCCCCGGGEEESSTTSCEEECC
T ss_pred             EEeCCCCCCHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHHCC-CCEEecccChhheeEECCCCCEEEEe
Confidence            999999999999994          4567999999999999999999999954 35999999999999985 79999999


Q ss_pred             CCCccc----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCC-CCC
Q 005680          485 LGLNIC----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNA-GIW  541 (683)
Q Consensus       485 FGla~~----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~-~~~  541 (683)
                      ||+|+.                      +.|+.++|||||||+||||+||++||......    ......+..+.. ..+
T Consensus       176 FGla~~~~~~~~~~~~GTp~YmAPE~~~~~y~~~~DiwSlGvilyelltg~~Pf~~~~~~----~~~~~~i~~~~~~~~~  251 (290)
T 3fpq_A          176 LGLATLKRASFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNA----AQIYRRVTSGVKPASF  251 (290)
T ss_dssp             TTGGGGCCTTSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSH----HHHHHHHTTTCCCGGG
T ss_pred             CcCCEeCCCCccCCcccCccccCHHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcH----HHHHHHHHcCCCCCCC
Confidence            999864                      45889999999999999999999999642211    112223333322 233


Q ss_pred             ChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          542 PLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       542 p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +..+++++.+||.+||+.|  |.+|||+.++++
T Consensus       252 ~~~~~~~~~~li~~~L~~d--P~~R~s~~e~l~  282 (290)
T 3fpq_A          252 DKVAIPEVKEIIEGCIRQN--KDERYSIKDLLN  282 (290)
T ss_dssp             GGCCCHHHHHHHHHHSCSS--GGGSCCHHHHHT
T ss_pred             CccCCHHHHHHHHHHccCC--hhHCcCHHHHhc
Confidence            4456789999999999999  889999999875

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=1.4e-45  Score=395.26  Aligned_cols=222  Identities=17%  Similarity=0.218  Sum_probs=186.3

Q ss_pred             ccccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCc
Q 005680          340 ERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNL  415 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL  415 (683)
                      ...+.+|+|+||.||+|++  +|+.||||+++....   ..+|+.+|++++|||||+++++|.+  ..|||||||+||+|
T Consensus        61 ~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~---~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L  137 (336)
T 4g3f_A           61 THQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF---RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSL  137 (336)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC---CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTTCBH
T ss_pred             EeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh---HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCCCcH
Confidence            3345678999999999998  689999999974322   2579999999999999999999976  78999999999999


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCC-cEEEecCCCccc----
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL-VAKISGLGLNIC----  490 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~-~~KL~DFGla~~----  490 (683)
                      .++|.          ....+++..+..|+.||+.||.|||+   ++||||||||+||||+.+| .+||+|||+|+.    
T Consensus       138 ~~~l~----------~~~~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~  204 (336)
T 4g3f_A          138 GQLIK----------QMGCLPEDRALYYLGQALEGLEYLHT---RRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPD  204 (336)
T ss_dssp             HHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCCGGGEEECTTSCCEEECCCTTCEEC---
T ss_pred             HHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCC
Confidence            99994          44679999999999999999999999   7799999999999999988 699999999852    


Q ss_pred             --------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCC--CCCCC
Q 005680          491 --------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGN--AGIWP  542 (683)
Q Consensus       491 --------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~--~~~~p  542 (683)
                                                ..|+.++|||||||++|||+||++||.....     ...+..+....  ....|
T Consensus       205 ~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~-----~~~~~~i~~~~~~~~~~~  279 (336)
T 4g3f_A          205 GLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFR-----GPLCLKIASEPPPIREIP  279 (336)
T ss_dssp             ---------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCC-----SCCHHHHHHSCCGGGGSC
T ss_pred             CcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCH-----HHHHHHHHcCCCCchhcC
Confidence                                      3578999999999999999999999964221     11222333322  22456


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhcc
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKAD  584 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~~  584 (683)
                      +.+++.+.+||.+||+.|  |.+|||+.|+++.|........
T Consensus       280 ~~~s~~~~~li~~~L~~d--P~~R~sa~el~~~l~~~l~~~~  319 (336)
T 4g3f_A          280 PSCAPLTAQAIQEGLRKE--PVHRASAMELRRKVGKALQEVG  319 (336)
T ss_dssp             TTSCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHHTT
T ss_pred             ccCCHHHHHHHHHHccCC--HhHCcCHHHHHHHHHHHHhhhh
Confidence            788999999999999999  8899999999999988776543

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=2.5e-45  Score=396.53  Aligned_cols=246  Identities=21%  Similarity=0.323  Sum_probs=197.7

Q ss_pred             CHHHHHHhhcCccccccccccCCceEEEEEEEC-------CeeEEEEEcCCCCC---HHHHHHHHHHHHhcCC-CCccce
Q 005680          327 AAEDIRLATEDFSERFRLKCAGDWTNVYRGRLN-------HASVAIKTLNNGLS---EEDFQAKVSFLTAVRH-PHLVAV  395 (683)
Q Consensus       327 s~~ei~~at~~F~~~~~liG~G~fG~Vykg~~~-------g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~H-pnIV~l  395 (683)
                      ..+++....++|.- .+.+|+|+||.||+|.+.       ++.||||++.....   ...|.+|+.+|.+++| ||||++
T Consensus        55 ~~~~wEi~~~~~~l-~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l  133 (353)
T 4ase_A           55 DASKWEFPRDRLKL-GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL  133 (353)
T ss_dssp             CHHHHBCCGGGEEE-EEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             CCcccEecHHHeEE-eeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEE
Confidence            33344333445533 356789999999999973       26799999975433   3568999999999965 999999


Q ss_pred             eccccc---ceeEEEeecCCCCchhhhhhccccccc------ccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEecc
Q 005680          396 MGCCSE---LKCIVFEYMPNGNLRDKLFTSQRNYKN------CSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGS  466 (683)
Q Consensus       396 ~g~~~~---~~~LV~Ey~~ggsL~~~L~~~~~~~~~------~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrD  466 (683)
                      +|+|.+   ..|||||||++|+|.++|.........      ......++|..++.|+.|||.||.|||+   ++|||||
T Consensus       134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~---~~iiHRD  210 (353)
T 4ase_A          134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRD  210 (353)
T ss_dssp             EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHH---TTCCCSC
T ss_pred             EEEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhh---CCeecCc
Confidence            999854   579999999999999999754321100      0124569999999999999999999999   7799999


Q ss_pred             CCCCcccccCCCcEEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchh
Q 005680          467 LTPSSILLDRNLVAKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGL  518 (683)
Q Consensus       467 LKP~NILld~~~~~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~  518 (683)
                      |||+||||+.++++||+|||+|+.                           ..|+.++|||||||+||||+| |++||..
T Consensus       211 LK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~  290 (353)
T 4ase_A          211 LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG  290 (353)
T ss_dssp             CSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTT
T ss_pred             cCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCC
Confidence            999999999999999999999863                           358899999999999999998 9999965


Q ss_pred             hHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          519 VEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       519 ~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      ..    ........+..+.....|..+++++.+|+.+||+.|  |..|||+.+|++.|+.+.+.
T Consensus       291 ~~----~~~~~~~~i~~g~~~~~p~~~~~~~~~li~~c~~~d--P~~RPt~~eil~~L~~llq~  348 (353)
T 4ase_A          291 VK----IDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGE--PSQRPTFSELVEHLGNLLQA  348 (353)
T ss_dssp             CC----CSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHH
T ss_pred             CC----HHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCcC--hhHCcCHHHHHHHHHHHHHH
Confidence            32    122233344455667778889999999999999999  88999999999999998653

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=1.9e-45  Score=390.08  Aligned_cols=218  Identities=19%  Similarity=0.255  Sum_probs=186.8

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcC-----CCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN-----NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~-----~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV  406 (683)
                      ++|. ..+++|+|+||+||+|+.  +|+.||||++.     .......+.+|+.+|++++|||||++++++.+  ..|||
T Consensus        32 ~dy~-i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yiv  110 (311)
T 4aw0_A           32 EDFK-FGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFG  110 (311)
T ss_dssp             GGEE-EEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccE-EEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            4554 457789999999999998  68999999996     23445789999999999999999999999976  78999


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      ||||+||+|.++|.          ....+++..+..|+.||+.||.|||+   ++||||||||+||||+.+|.+||+|||
T Consensus       111 mEy~~gG~L~~~i~----------~~~~l~e~~~~~~~~qi~~al~ylH~---~~IiHRDlKPeNILl~~~g~vKl~DFG  177 (311)
T 4aw0_A          111 LSYAKNGELLKYIR----------KIGSFDETCTRFYTAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFG  177 (311)
T ss_dssp             ECCCTTEEHHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCT
T ss_pred             EecCCCCCHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCCHHHeEEcCCCCEEEEEcC
Confidence            99999999999993          45679999999999999999999999   779999999999999999999999999


Q ss_pred             Cccc---------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCC
Q 005680          487 LNIC---------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG  539 (683)
Q Consensus       487 la~~---------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~  539 (683)
                      +|+.                           ..|+.++|||||||++|+|+||++||.....     ...+..++.. ..
T Consensus       178 la~~~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~-----~~~~~~i~~~-~~  251 (311)
T 4aw0_A          178 TAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE-----GLIFAKIIKL-EY  251 (311)
T ss_dssp             TCEECCTTTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHT-CC
T ss_pred             CceecCCCCCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHHHcC-CC
Confidence            9853                           3578999999999999999999999964221     2223334433 34


Q ss_pred             CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          540 IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       540 ~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .+|..+++++.+||.+||+.|  |.+|||+.+++..
T Consensus       252 ~~p~~~s~~~~dli~~lL~~d--p~~R~t~~e~~~~  285 (311)
T 4aw0_A          252 DFPEKFFPKARDLVEKLLVLD--ATKRLGCEEMEGY  285 (311)
T ss_dssp             CCCTTCCHHHHHHHHHHSCSS--GGGSTTSGGGTCH
T ss_pred             CCCcccCHHHHHHHHHHccCC--HhHCcChHHHcCC
Confidence            567788999999999999999  8899999987543

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=2.5e-45  Score=394.61  Aligned_cols=214  Identities=18%  Similarity=0.208  Sum_probs=181.4

Q ss_pred             ccccccccCCceEEEEEEE--CCeeEEEEEcC--CCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          340 ERFRLKCAGDWTNVYRGRL--NHASVAIKTLN--NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~--~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      ...+.+|+|+||.||+|.+  +|+.||||++.  .....+.+.+|+.+|++++|||||+++++|.+  ..|||||||+||
T Consensus        77 ~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg  156 (346)
T 4fih_A           77 DNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGG  156 (346)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCTTE
T ss_pred             EEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCCCC
Confidence            3445678999999999998  68999999996  33345678999999999999999999999966  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++.           ...+++..+..|+.||+.||.|||+   ++||||||||+||||+.+|.+||+|||+|+.   
T Consensus       157 ~L~~~l~-----------~~~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~  222 (346)
T 4fih_A          157 ALTDIVT-----------HTRMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK  222 (346)
T ss_dssp             EHHHHHH-----------HSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECCS
T ss_pred             cHHHHHH-----------cCCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCCHHHEEECCCCCEEEecCcCceecCC
Confidence            9999983           2459999999999999999999999   7799999999999999999999999999853   


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCC--CCCCChhhH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGN--AGIWPLDLA  546 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~--~~~~p~~~~  546 (683)
                                            ..|+.++||||||||+|||+||++||.....     ...+..+....  ....+..++
T Consensus       223 ~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~-----~~~~~~i~~~~~~~~~~~~~~s  297 (346)
T 4fih_A          223 EVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP-----LKAMKMIRDNLPPRLKNLHKVS  297 (346)
T ss_dssp             SSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH-----HHHHHHHHHSSCCCCSCGGGSC
T ss_pred             CCCcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH-----HHHHHHHHcCCCCCCCccccCC
Confidence                                  3589999999999999999999999965322     12233333332  223345788


Q ss_pred             HHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          547 EELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       547 ~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +++.+||.+||+.|  |.+|||+.++++
T Consensus       298 ~~~~dli~~~L~~d--P~~R~ta~e~l~  323 (346)
T 4fih_A          298 PSLKGFLDRLLVRD--PAQRATAAELLK  323 (346)
T ss_dssp             HHHHHHHHHHSCSS--TTTSCCHHHHTT
T ss_pred             HHHHHHHHHHcCCC--hhHCcCHHHHhc
Confidence            99999999999999  889999998865

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=7.4e-45  Score=384.97  Aligned_cols=226  Identities=22%  Similarity=0.307  Sum_probs=178.4

Q ss_pred             cccccCCceEEEEEEECCeeEEEEEcCCCCCHHHH--HHHHHHHHhcCCCCccceeccccc------ceeEEEeecCCCC
Q 005680          343 RLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDF--QAKVSFLTAVRHPHLVAVMGCCSE------LKCIVFEYMPNGN  414 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~--~~Ev~iL~~l~HpnIV~l~g~~~~------~~~LV~Ey~~ggs  414 (683)
                      +.+|+|+||.||+|.++|+.||||+++... ...+  ..|+..+.+++|||||+++|+|.+      ..|||||||+|||
T Consensus         9 ~~iG~G~fG~Vy~~~~~g~~VAvK~l~~~~-~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey~~~gs   87 (303)
T 3hmm_A            9 ESIGKGRFGEVWRGKWRGEEVAVKIFSSRE-ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGS   87 (303)
T ss_dssp             EEEEECSSSEEEEEEETTEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCB
T ss_pred             EEEeeCCCeEEEEEEECCEEEEEEEECccc-hhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEecCCCCCc
Confidence            567899999999999999999999997433 3333  446666678999999999999964      3689999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCC-----CCcEEeccCCCCcccccCCCcEEEecCCCcc
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTE-----PRPIVHGSLTPSSILLDRNLVAKISGLGLNI  489 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~-----~~~IiHrDLKP~NILld~~~~~KL~DFGla~  489 (683)
                      |.++|.           ...++|..+.+|+.|++.||.|||+..     .++||||||||+|||||.++++||+|||+|+
T Consensus        88 L~~~l~-----------~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~  156 (303)
T 3hmm_A           88 LFDYLN-----------RYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV  156 (303)
T ss_dssp             HHHHHH-----------HCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             HHHHHH-----------hCCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCc
Confidence            999994           235899999999999999999999841     1479999999999999999999999999974


Q ss_pred             c----------------------------c-------CCCcccccccHHHHHHHHhhCCCCchhhHHHh---------hh
Q 005680          490 C----------------------------D-------QLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAM---------AL  525 (683)
Q Consensus       490 ~----------------------------~-------~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~---------~~  525 (683)
                      .                            +       .++.++|||||||+||||+||.+||+......         ..
T Consensus       157 ~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~  236 (303)
T 3hmm_A          157 RHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDP  236 (303)
T ss_dssp             EEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSC
T ss_pred             cccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccc
Confidence            3                            0       24678999999999999999998775321100         00


Q ss_pred             hHHHHH-HHhcC-CCCCCCh-----hhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          526 DQTTLM-QVLDG-NAGIWPL-----DLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       526 ~~~~~~-~ild~-~~~~~p~-----~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      ....+. .+... ..+..|.     .++..+.+|+.+||+.|  |..||||.+|++.|+.|.+.
T Consensus       237 ~~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~d--P~~RPt~~ei~~~L~~l~~~  298 (303)
T 3hmm_A          237 SVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYAN--GAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             CHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSS--GGGSCCHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHhcccCCCCCCccccchHHHHHHHHHHHHHcccC--HhHCcCHHHHHHHHHHHHHH
Confidence            111122 22222 2333443     35678999999999999  88999999999999998753

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=1.6e-44  Score=377.14  Aligned_cols=217  Identities=20%  Similarity=0.307  Sum_probs=177.8

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV  406 (683)
                      ++|.. .+.+|+|+||.||+|..  +|+.||||+++.     ......+.+|+.+|++++|||||++++++.+  ..|||
T Consensus        13 g~Y~i-~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv   91 (275)
T 3hyh_A           13 GNYQI-VKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV   91 (275)
T ss_dssp             -CCEE-EEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             eCeEE-EEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEE
Confidence            45543 46778999999999998  689999999862     2234679999999999999999999999966  78999


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      |||| +|+|.++|.          ....+++..+..|+.||+.||.|||+   ++|+||||||+||||+.++.+||+|||
T Consensus        92 mEy~-~g~L~~~l~----------~~~~l~e~~~~~~~~qi~~al~ylH~---~~IiHRDiKP~NILl~~~~~vkl~DFG  157 (275)
T 3hyh_A           92 IEYA-GNELFDYIV----------QRDKMSEQEARRFFQQIISAVEYCHR---HKIVHRDLKPENLLLDEHLNVKIADFG  157 (275)
T ss_dssp             EECC-CEEHHHHHH----------HSCSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCTTTEEECTTCCEEECCSS
T ss_pred             EeCC-CCCHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCChHHeEECCCCCEEEeecC
Confidence            9999 689999993          45679999999999999999999999   779999999999999999999999999


Q ss_pred             Cccc------------------------cC-CCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCC
Q 005680          487 LNIC------------------------DQ-LNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIW  541 (683)
Q Consensus       487 la~~------------------------~~-~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~  541 (683)
                      +|+.                        .. ++.++|||||||++|+|+||++||.....     ...+..+.. ....+
T Consensus       158 la~~~~~~~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~-----~~~~~~i~~-~~~~~  231 (275)
T 3hyh_A          158 LSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESI-----PVLFKNISN-GVYTL  231 (275)
T ss_dssp             CC---------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHH-TCCCC
T ss_pred             CCeecCCCCccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCH-----HHHHHHHHc-CCCCC
Confidence            9854                        22 36799999999999999999999965221     122223333 33456


Q ss_pred             ChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          542 PLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       542 p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      |..+++++.+|+.+||+.|  |.+|||+.++++.
T Consensus       232 p~~~s~~~~~li~~~L~~d--P~~R~s~~eil~h  263 (275)
T 3hyh_A          232 PKFLSPGAAGLIKRMLIVN--PLNRISIHEIMQD  263 (275)
T ss_dssp             CTTSCHHHHHHHHHHSCSS--GGGSCCHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHccCC--hhHCcCHHHHHcC
Confidence            7788999999999999999  8899999998763

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=2.1e-44  Score=396.84  Aligned_cols=215  Identities=18%  Similarity=0.204  Sum_probs=181.9

Q ss_pred             cccccccccCCceEEEEEEE--CCeeEEEEEcC--CCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          339 SERFRLKCAGDWTNVYRGRL--NHASVAIKTLN--NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       339 ~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~--~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      +...+.+|+|+||.||+|.+  +|+.||||++.  .....+.+.+|+.+|+.++|||||+++++|.+  ..|||||||+|
T Consensus       153 y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~g  232 (423)
T 4fie_A          153 LDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEG  232 (423)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred             cEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCCCC
Confidence            34556778999999999998  68999999997  33345678999999999999999999999965  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++.           ...+++..+..|+.||+.||.|||+   ++||||||||+||||+.+|.+||+|||+|+.  
T Consensus       233 G~L~~~i~-----------~~~l~e~~~~~~~~qil~aL~ylH~---~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~  298 (423)
T 4fie_A          233 GALTDIVT-----------HTRMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVS  298 (423)
T ss_dssp             EEHHHHHH-----------HSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSTTTEEECTTCCEEECCCTTCEECC
T ss_pred             CcHHHHHh-----------ccCCCHHHHHHHHHHHHHHHHHHHH---CCeecccCCHHHEEEcCCCCEEEecCccceECC
Confidence            99999983           2359999999999999999999999   7799999999999999999999999999853  


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCC--CCCCChhh
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGN--AGIWPLDL  545 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~--~~~~p~~~  545 (683)
                                             ..|+.++|||||||++|||++|++||.....     ...+..+....  ....+..+
T Consensus       299 ~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~-----~~~~~~i~~~~~~~~~~~~~~  373 (423)
T 4fie_A          299 KEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP-----LKAMKMIRDNLPPRLKNLHKV  373 (423)
T ss_dssp             SSCCCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH-----HHHHHHHHHSCCCCCSCTTSS
T ss_pred             CCCccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH-----HHHHHHHHcCCCCCCcccccC
Confidence                                   3589999999999999999999999964322     12223333332  22334568


Q ss_pred             HHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          546 AEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       546 ~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ++++.+||.+||..|  |.+|||+.++++
T Consensus       374 s~~~~dli~~~L~~d--P~~R~ta~ell~  400 (423)
T 4fie_A          374 SPSLKGFLDRLLVRD--PAQRATAAELLK  400 (423)
T ss_dssp             CHHHHHHHHHHSCSS--TTTSCCHHHHTT
T ss_pred             CHHHHHHHHHHcCCC--hhHCcCHHHHhc
Confidence            899999999999999  889999998865

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=1e-44  Score=383.76  Aligned_cols=212  Identities=21%  Similarity=0.282  Sum_probs=174.4

Q ss_pred             cCccccccccccCCceEEEEEEE-----CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc--cee
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL-----NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKC  404 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~-----~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~  404 (683)
                      ++|. ..+.+|+|+||+||+|+.     +++.||||+++..    .....+.+|+.+|++++|||||++++++.+  ..|
T Consensus        24 ~~Y~-i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  102 (304)
T 3ubd_A           24 SQFE-LLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLY  102 (304)
T ss_dssp             GGEE-EEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEE
T ss_pred             cccE-EEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEE
Confidence            3453 456789999999999986     3678999999622    223468899999999999999999999966  789


Q ss_pred             EEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEec
Q 005680          405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISG  484 (683)
Q Consensus       405 LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~D  484 (683)
                      ||||||+||+|.++|.          ....+++..+..|+.||+.||.|||+   ++||||||||+|||++.+|.+||+|
T Consensus       103 ivmEy~~gg~L~~~l~----------~~~~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~D  169 (304)
T 3ubd_A          103 LILDFLRGGDLFTRLS----------KEVMFTEEDVKFYLAELALALDHLHS---LGIIYRDLKPENILLDEEGHIKLTD  169 (304)
T ss_dssp             EEECCCTTCEEHHHHH----------HHCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCCGGGEEECTTSCEEEES
T ss_pred             EEEEcCCCCCHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCCCHHHeEEcCCCCEEecc
Confidence            9999999999999994          45679999999999999999999999   7799999999999999999999999


Q ss_pred             CCCccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCC
Q 005680          485 LGLNIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG  539 (683)
Q Consensus       485 FGla~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~  539 (683)
                      ||+|+.                         ..|+.++|||||||++|||+||++||.....     ...+..++.. ..
T Consensus       170 FGla~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~-----~~~~~~i~~~-~~  243 (304)
T 3ubd_A          170 FGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDR-----KETMTMILKA-KL  243 (304)
T ss_dssp             SEEEEC-----CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHC-CC
T ss_pred             cccceeccCCCccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCH-----HHHHHHHHcC-CC
Confidence            999853                         3588999999999999999999999975322     2223333333 34


Q ss_pred             CCChhhHHHHHHHHHHhhhcCCCccccccH
Q 005680          540 IWPLDLAEELAGIALKCLSADQDANRDLRI  569 (683)
Q Consensus       540 ~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~  569 (683)
                      .+|..+++++.+||.+||+.|  |.+|||+
T Consensus       244 ~~p~~~s~~~~~li~~~L~~d--P~~R~ta  271 (304)
T 3ubd_A          244 GMPQFLSPEAQSLLRMLFKRN--PANRLGA  271 (304)
T ss_dssp             CCCTTSCHHHHHHHHHHTCSS--GGGSTTC
T ss_pred             CCCCcCCHHHHHHHHHHcccC--HHHCCCC
Confidence            567788999999999999999  8899995

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=1.3e-42  Score=367.20  Aligned_cols=218  Identities=20%  Similarity=0.241  Sum_probs=170.3

Q ss_pred             CccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceeccccc----------
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE----------  401 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----------  401 (683)
                      +|.. .+.+|+|+||.||+|..  +|+.||||+++...   ..+.+.+|+.+|++++|||||+++++|.+          
T Consensus         6 dy~~-~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~   84 (299)
T 4g31_A            6 DFEP-IQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS   84 (299)
T ss_dssp             HEEE-EEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred             hCEE-eeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence            3433 46789999999999998  68999999997322   23578999999999999999999999853          


Q ss_pred             ----ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC
Q 005680          402 ----LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN  477 (683)
Q Consensus       402 ----~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~  477 (683)
                          ..|||||||+||+|.+++...       ......++..++.|+.||+.||.|||+   ++||||||||+||||+.+
T Consensus        85 ~~~~~l~ivmE~~~gg~L~~~l~~~-------~~~~~~~~~~~~~i~~qi~~al~ylH~---~~IiHRDlKp~NILl~~~  154 (299)
T 4g31_A           85 SPKVYLYIQMQLCRKENLKDWMNGR-------CTIEERERSVCLHIFLQIAEAVEFLHS---KGLMHRDLKPSNIFFTMD  154 (299)
T ss_dssp             --CEEEEEEEECCCSCCHHHHHHTC-------CSGGGSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTT
T ss_pred             CCCcEEEEEEecCCCCcHHHHHHhc-------CCCChhHHHHHHHHHHHHHHHHHHHHH---CcCccccCcHHHeEECCC
Confidence                268999999999999999644       233456778899999999999999999   779999999999999999


Q ss_pred             CcEEEecCCCccc-------------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhH
Q 005680          478 LVAKISGLGLNIC-------------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVE  520 (683)
Q Consensus       478 ~~~KL~DFGla~~-------------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~  520 (683)
                      +.+||+|||+|+.                                     ..|+.++|||||||++|||++   ||....
T Consensus       155 ~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~  231 (299)
T 4g31_A          155 DVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQM  231 (299)
T ss_dssp             CCEEECCCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHH
T ss_pred             CcEEEccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCcc
Confidence            9999999999842                                     357899999999999999997   664321


Q ss_pred             HHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          521 KAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       521 ~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ..    ...+..+.....++.+...++.+.+|+.+||+.|  |..|||+.++++
T Consensus       232 ~~----~~~~~~~~~~~~p~~~~~~~~~~~~li~~~L~~d--P~~Rps~~eil~  279 (299)
T 4g31_A          232 ER----VRTLTDVRNLKFPPLFTQKYPCEYVMVQDMLSPS--PMERPEAINIIE  279 (299)
T ss_dssp             HH----HHHHHHHHTTCCCHHHHHHCHHHHHHHHHHTCSS--GGGSCCHHHHHT
T ss_pred             HH----HHHHHHHhcCCCCCCCcccCHHHHHHHHHHcCCC--hhHCcCHHHHhc
Confidence            11    1122222222222222345567889999999999  889999999865

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.9e-41  Score=368.64  Aligned_cols=219  Identities=16%  Similarity=0.238  Sum_probs=173.7

Q ss_pred             ccccccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc--------ceeE
Q 005680          340 ERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--------LKCI  405 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--------~~~L  405 (683)
                      ...+.+|+|+||+||+|.+  +|+.||||+++...    ....+.+|+.+|+.++|||||++++++..        ..||
T Consensus        57 ~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~~~i  136 (398)
T 4b99_A           57 EIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKSVYV  136 (398)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCCEEE
T ss_pred             EEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCEEEE
Confidence            3456789999999999998  68999999997332    23568899999999999999999998742        5799


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecC
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGL  485 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DF  485 (683)
                      |||||+ |+|.++|          .....+++..+..|+.||+.||.|||+   .+||||||||+|||++.+|.+||+||
T Consensus       137 vmE~~~-g~L~~~i----------~~~~~l~~~~~~~~~~qil~al~ylH~---~~iiHRDlKP~NIl~~~~~~~Ki~DF  202 (398)
T 4b99_A          137 VLDLME-SDLHQII----------HSSQPLTLEHVRYFLYQLLRGLKYMHS---AQVIHRDLKPSNLLVNENCELKIGDF  202 (398)
T ss_dssp             EEECCS-EEHHHHH----------TSSSCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTCCEEECCC
T ss_pred             EEeCCC-CCHHHHH----------HhcCCCCHHHHHHHHHHHHHHHHHHHH---CcCcCCCcCccccccCCCCCEEEeec
Confidence            999996 7899999          455689999999999999999999999   67999999999999999999999999


Q ss_pred             CCccc------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhH--------
Q 005680          486 GLNIC------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQ--------  527 (683)
Q Consensus       486 Gla~~------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~--------  527 (683)
                      |+|+.                              ..++.++||||+|||+|||+||++||...........        
T Consensus       203 Gla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p  282 (398)
T 4b99_A          203 GMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTP  282 (398)
T ss_dssp             TTCBCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCC
T ss_pred             ceeeecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCC
Confidence            99852                              2368899999999999999999999964222100000        


Q ss_pred             ----------HHHHHHhcCCCC--CC-----ChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          528 ----------TTLMQVLDGNAG--IW-----PLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       528 ----------~~~~~ild~~~~--~~-----p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                                ......+.....  ..     .+.+++++.+||.+||..|  |.+|||+.++++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~d--P~~R~ta~e~L~  344 (398)
T 4b99_A          283 SPAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFE--PSARISAAAALR  344 (398)
T ss_dssp             CGGGTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSS--TTTSCCHHHHTT
T ss_pred             ChHHhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCC--hhHCcCHHHHhc
Confidence                      000011111000  11     1245788999999999999  889999988765

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=1.8e-39  Score=340.27  Aligned_cols=248  Identities=28%  Similarity=0.480  Sum_probs=208.4

Q ss_pred             ccccccCHHHHHHhhcCccccc-----cccccCCceEEEEEEECCeeEEEEEcCCC------CCHHHHHHHHHHHHhcCC
Q 005680          321 CAFREYAAEDIRLATEDFSERF-----RLKCAGDWTNVYRGRLNHASVAIKTLNNG------LSEEDFQAKVSFLTAVRH  389 (683)
Q Consensus       321 ~~~~~~s~~ei~~at~~F~~~~-----~liG~G~fG~Vykg~~~g~~VAvK~l~~~------~~~~~~~~Ev~iL~~l~H  389 (683)
                      ..++.|++.++..+|++|+...     +.+|+|+||.||+|..++..||||++...      .....+.+|+.++++++|
T Consensus        10 ~~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h   89 (307)
T 2nru_A           10 TRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQH   89 (307)
T ss_dssp             -CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEESSSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCC
T ss_pred             CCCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEECCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCC
Confidence            4578899999999999998762     46789999999999999999999998632      124678999999999999


Q ss_pred             CCccceeccccc--ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccC
Q 005680          390 PHLVAVMGCCSE--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSL  467 (683)
Q Consensus       390 pnIV~l~g~~~~--~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDL  467 (683)
                      |||+++++++.+  ..++||||+++|+|.+++...       .....+++..++.|+.||+.||.|||+   .+|+||||
T Consensus        90 ~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-------~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dl  159 (307)
T 2nru_A           90 ENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCL-------DGTPPLSWHMRCKIAQGAANGINFLHE---NHHIHRDI  159 (307)
T ss_dssp             TTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTG-------GGCCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCC
T ss_pred             CCeEEEEEEEecCCceEEEEEecCCCcHHHHHHhc-------cCCCCCCHHHHHHHHHHHHHHHHHHhc---CCeecCCC
Confidence            999999999966  789999999999999999644       345679999999999999999999999   67999999


Q ss_pred             CCCcccccCCCcEEEecCCCccc--------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHH
Q 005680          468 TPSSILLDRNLVAKISGLGLNIC--------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEK  521 (683)
Q Consensus       468 KP~NILld~~~~~KL~DFGla~~--------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~  521 (683)
                      ||+|||++.++.+||+|||++..                          +.++.++||||||+++|+|++|.+||.....
T Consensus       160 kp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~  239 (307)
T 2nru_A          160 KSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHRE  239 (307)
T ss_dssp             CGGGEEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTTEECTHHHHHHHHHHHHHHHHCCCSBCTTBS
T ss_pred             CHHHEEEcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcCCCCccchhHHHHHHHHHHHHCCCCcccCcc
Confidence            99999999999999999998742                          2357799999999999999999999964321


Q ss_pred             Hh---------hhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          522 AM---------ALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       522 ~~---------~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      ..         ......+...++......+...+..+.+++.+||+.|  |..|||+.+|++.|+.+.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~--p~~Rps~~~l~~~L~~l~  305 (307)
T 2nru_A          240 PQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEK--KNKRPDIKKVQQLLQEMT  305 (307)
T ss_dssp             SSBTTHHHHHHHTTSCCHHHHSCSSCSCCCHHHHHHHHHHHHHHTCSS--TTTSCCHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCCC--cccCcCHHHHHHHHHHHh
Confidence            10         0011123444555556667788999999999999999  889999999999999874

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=5.1e-40  Score=378.24  Aligned_cols=220  Identities=25%  Similarity=0.307  Sum_probs=179.8

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHH---HHHHHhcCCCCccceeccccc--ce
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAK---VSFLTAVRHPHLVAVMGCCSE--LK  403 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~E---v~iL~~l~HpnIV~l~g~~~~--~~  403 (683)
                      ++|. ..+++|+|+||.||+|+.  +|+.||||++..     ......+.+|   +.+++.++|||||+++++|.+  ..
T Consensus       189 ddf~-i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l  267 (689)
T 3v5w_A          189 NDFS-VHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL  267 (689)
T ss_dssp             GGEE-EEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred             HHeE-EEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence            5564 457889999999999998  689999999962     2233444444   566677899999999999976  78


Q ss_pred             eEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEe
Q 005680          404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKIS  483 (683)
Q Consensus       404 ~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~  483 (683)
                      |||||||+||+|.++|.          ....+++..+..|+.||+.||.|||+   ++||||||||+||||+.+|++||+
T Consensus       268 ylVmEy~~GGdL~~~l~----------~~~~l~E~~a~~y~~qIl~aL~yLH~---~gIiHRDLKPeNILld~~G~vKL~  334 (689)
T 3v5w_A          268 SFILDLMNGGDLHYHLS----------QHGVFSEADMRFYAAEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRIS  334 (689)
T ss_dssp             EEEECCCCSCBHHHHHH----------HHCCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCSGGGEEECTTSCEEEC
T ss_pred             EEEEecCCCCcHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCchHHeEEeCCCCEEec
Confidence            99999999999999993          45679999999999999999999999   779999999999999999999999


Q ss_pred             cCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCC
Q 005680          484 GLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG  539 (683)
Q Consensus       484 DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~  539 (683)
                      |||+|+.                        ..|+.++||||||||||||+||++||.....   .....+...+.....
T Consensus       335 DFGlA~~~~~~~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~---~~~~~i~~~i~~~~~  411 (689)
T 3v5w_A          335 DLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKT---KDKHEIDRMTLTMAV  411 (689)
T ss_dssp             CCTTCEECSSCCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGC---CCHHHHHHHHHHCCC
T ss_pred             ccceeeecCCCCCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh---HHHHHHHHhhcCCCC
Confidence            9999853                        2588999999999999999999999964221   111122222223345


Q ss_pred             CCChhhHHHHHHHHHHhhhcCCCcccccc-----HHHHHH
Q 005680          540 IWPLDLAEELAGIALKCLSADQDANRDLR-----IAGVMK  574 (683)
Q Consensus       540 ~~p~~~~~~l~~Li~~CL~~dP~p~~RPs-----~~eVl~  574 (683)
                      .+|..+++++.+||.+||..|  |.+|++     +.+|++
T Consensus       412 ~~p~~~S~~a~dLI~~lL~~d--P~~Rl~~~~~ga~ei~~  449 (689)
T 3v5w_A          412 ELPDSFSPELRSLLEGLLQRD--VNRRLGCLGRGAQEVKE  449 (689)
T ss_dssp             CCCTTSCHHHHHHHHHHTCSC--GGGCTTCSSSTHHHHTT
T ss_pred             CCCccCCHHHHHHHHHHccCC--HhHCCCCCCCCHHHHhc
Confidence            677789999999999999999  889998     566654

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.5e-39  Score=339.20  Aligned_cols=230  Identities=20%  Similarity=0.357  Sum_probs=193.2

Q ss_pred             ccccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceecccccceeEEEeecCCCCchhhhhh
Q 005680          342 FRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELKCIVFEYMPNGNLRDKLFT  421 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~~~~LV~Ey~~ggsL~~~L~~  421 (683)
                      .+++|+|+||.||+|.+.+..||||++........+.+|+.++++++|||||++++++.+..++||||+++|+|.+++..
T Consensus        13 ~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~lv~e~~~~~~L~~~l~~   92 (307)
T 2eva_A           13 EEVVGRGAFGVVCKAKWRAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACLNPVCLVMEYAEGGSLYNVLHG   92 (307)
T ss_dssp             EEEEECCSSSEEEEEEETTEEEEEEECSSTTHHHHHHHHHHHHHHCCCTTBCCEEEBCTTTTEEEEECCTTCBHHHHHHC
T ss_pred             eeEeecCCCceEEEEEECCeeEEEEEecChhHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCcEEEEEcCCCCCHHHHHhc
Confidence            45778999999999999999999999986666778999999999999999999999999999999999999999999964


Q ss_pred             cccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc-EEEecCCCccc----------
Q 005680          422 SQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV-AKISGLGLNIC----------  490 (683)
Q Consensus       422 ~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~-~KL~DFGla~~----------  490 (683)
                      .       .....+++..++.++.||+.||.|||+.++.+|+||||||+|||++.++. +||+|||++..          
T Consensus        93 ~-------~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~~~~~~g  165 (307)
T 2eva_A           93 A-------EPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKG  165 (307)
T ss_dssp             S-------SSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC------------C
T ss_pred             c-------CCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccccccCCC
Confidence            3       23345889999999999999999999965567999999999999998886 79999999743          


Q ss_pred             ------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhh
Q 005680          491 ------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLS  558 (683)
Q Consensus       491 ------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~  558 (683)
                                  ..++.++|||||||++|+|+||+.||.....   .................+..++..+.+|+.+||+
T Consensus       166 t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  242 (307)
T 2eva_A          166 SAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGG---PAFRIMWAVHNGTRPPLIKNLPKPIESLMTRCWS  242 (307)
T ss_dssp             CTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCS---SHHHHHHHHHTTCCCCCBTTCCHHHHHHHHHHTC
T ss_pred             CCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCc---cHHHHHHHHhcCCCCCcccccCHHHHHHHHHHhc
Confidence                        3578899999999999999999999964221   1111222333444555666788999999999999


Q ss_pred             cCCCccccccHHHHHHHHHHHHHhc
Q 005680          559 ADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       559 ~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      .|  |..|||+.++++.|+.+.+..
T Consensus       243 ~d--p~~Rps~~ell~~L~~~~~~~  265 (307)
T 2eva_A          243 KD--PSQRPSMEEIVKIMTHLMRYF  265 (307)
T ss_dssp             SS--GGGSCCHHHHHHHHHHHGGGC
T ss_pred             CC--hhhCcCHHHHHHHHHHHHHhc
Confidence            99  889999999999999987654

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=1.3e-39  Score=346.28  Aligned_cols=269  Identities=19%  Similarity=0.297  Sum_probs=203.4

Q ss_pred             CccccccccccCCceEEEEEEE--CCe----eEEEEEcCC---CCCHHHHHHHHHHHHhcCCCCccceeccccc-ceeEE
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL--NHA----SVAIKTLNN---GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIV  406 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~--~g~----~VAvK~l~~---~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV  406 (683)
                      +|.. .+++|+|+||.||+|.+  +|.    .||+|.+..   ......+.+|+.++++++|||||+++++|.+ ..++|
T Consensus        16 ~y~~-~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~v   94 (327)
T 3poz_A           16 EFKK-IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLI   94 (327)
T ss_dssp             GEEE-EEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSSEEEE
T ss_pred             Hccc-ceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEE
Confidence            3433 46778999999999997  443    468998862   2345789999999999999999999999976 78899


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      ++|+++|+|.+++..         ....+++..++.|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||
T Consensus        95 ~e~~~~g~L~~~l~~---------~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~Dikp~NIll~~~~~~kl~Dfg  162 (327)
T 3poz_A           95 TQLMPFGCLLDYVRE---------HKDNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDFG  162 (327)
T ss_dssp             EECCTTCBHHHHHHH---------STTSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETTEEEECCTT
T ss_pred             EEecCCCcHHHHHHh---------cCCCCCHHHHHHHHHHHHHHHHHHhh---CCeeCCCCChheEEECCCCCEEEccCc
Confidence            999999999999953         34569999999999999999999999   679999999999999999999999999


Q ss_pred             Cccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCC
Q 005680          487 LNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNA  538 (683)
Q Consensus       487 la~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~  538 (683)
                      +++.                           ..++.++|||||||++|+|+| |++||.....     ......+.....
T Consensus       163 ~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~-----~~~~~~~~~~~~  237 (327)
T 3poz_A          163 LAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEKGER  237 (327)
T ss_dssp             HHHHHTTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG-----GGHHHHHHTTCC
T ss_pred             ceeEccCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCH-----HHHHHHHHcCCC
Confidence            8742                           246889999999999999999 9999975322     111222223344


Q ss_pred             CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhccccccccCcchhhcccCCCCCCCCCCccccccccc
Q 005680          539 GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKADGLADKRESEVVTDRCANKEDSNDVPSVFICPIFQ  618 (683)
Q Consensus       539 ~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~~~~~~~~~~~~~~~~~~ssesss~~Ps~f~cPIs~  618 (683)
                      ...+..++..+.+|+.+||+.|  |..|||+.++++.|+.+.+.........+.       .....+.+.++.|.+++..
T Consensus       238 ~~~~~~~~~~~~~li~~~l~~~--p~~Rps~~ell~~l~~~~~~~~~~~~~~~~-------~~~~~~~p~~~~~~~~~~~  308 (327)
T 3poz_A          238 LPQPPICTIDVYMIMVKCWMID--ADSRPKFRELIIEFSKMARDPQRYLVIQGD-------ERMHLPSPTDSNFYRALMD  308 (327)
T ss_dssp             CCCCTTBCHHHHHHHHHHTCSC--GGGSCCHHHHHHHHHHHHTSHHHHBCCTTG-------GGCCCCCTTTCHHHHHHHC
T ss_pred             CCCCccCCHHHHHHHHHHcCCC--hhhCCCHHHHHHHHHHHHhhhhhhhhhcCC-------CccCCCCCCchHHHHhccc
Confidence            5567778899999999999999  889999999999999987643322221111       1112233445667788888


Q ss_pred             cccCCCcccCCCcc
Q 005680          619 EVMKTPHVAADGFS  632 (683)
Q Consensus       619 elm~dPvv~~dG~T  632 (683)
                      +.+.++++.+|++-
T Consensus       309 ~~~~~~~~~~d~~~  322 (327)
T 3poz_A          309 EEDMDDVVDADEYL  322 (327)
T ss_dssp             ------CCCHHHHC
T ss_pred             ccccccccCHHHcc
Confidence            88888888777653

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=2.4e-39  Score=350.98  Aligned_cols=221  Identities=19%  Similarity=0.232  Sum_probs=174.0

Q ss_pred             hcCccccccccccCCceEEEEEEE-----CCeeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEE
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL-----NHASVAIKTLNNGLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~-----~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV  406 (683)
                      .+.|. ..+.+|+|+||.||+|+.     +++.||||++........+.+|+.+|..+ +|||||++++++.+  ..|||
T Consensus        20 ~~~Y~-i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~lv   98 (361)
T 4f9c_A           20 SNVFK-IEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVIA   98 (361)
T ss_dssp             GGTCE-EEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSCHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEEEE
T ss_pred             cCcEE-EEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccCHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEEEE
Confidence            34454 456778999999999986     36789999998766778899999999998 69999999999965  78999


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC-CcEEEecC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN-LVAKISGL  485 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~-~~~KL~DF  485 (683)
                      ||||+||+|.+++          .   .+++..+..|+.||+.||.|||+   .+||||||||+||||+.+ +.+||+||
T Consensus        99 mE~~~g~~L~~~~----------~---~l~~~~~~~~~~qll~al~ylH~---~gIiHRDiKPeNiLl~~~~~~~kl~DF  162 (361)
T 4f9c_A           99 MPYLEHESFLDIL----------N---SLSFQEVREYMLNLFKALKRIHQ---FGIVHRDVKPSNFLYNRRLKKYALVDF  162 (361)
T ss_dssp             EECCCCCCHHHHH----------T---TCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEETTTTEEEECCC
T ss_pred             EeCCCcccHHHHH----------c---CCCHHHHHHHHHHHHHHHHHHHH---CCeEeCcCCHHHeEEeCCCCeEEECcC
Confidence            9999999999998          1   38999999999999999999999   779999999999999877 89999999


Q ss_pred             CCccc------------------------------------------------------cCCCcccccccHHHHHHHHhh
Q 005680          486 GLNIC------------------------------------------------------DQLNVRSDIRAFGTLLLHLLT  511 (683)
Q Consensus       486 Gla~~------------------------------------------------------~~~t~ksDVwSlGviL~eLlt  511 (683)
                      |+|+.                                                      ..|+.++||||+|||+|+|+|
T Consensus       163 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~  242 (361)
T 4f9c_A          163 GLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLS  242 (361)
T ss_dssp             TTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHH
T ss_pred             CCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHH
Confidence            99841                                                      237889999999999999999


Q ss_pred             CCCCchhhHHHh-hhh--------------------------------HHHHHHHhcC----------------CCCCCC
Q 005680          512 GRNWAGLVEKAM-ALD--------------------------------QTTLMQVLDG----------------NAGIWP  542 (683)
Q Consensus       512 G~~Pf~~~~~~~-~~~--------------------------------~~~~~~ild~----------------~~~~~p  542 (683)
                      |++||....... ...                                .......+..                ......
T Consensus       243 G~~Pf~~~~~~~~~l~~I~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  322 (361)
T 4f9c_A          243 GRYPFYKASDDLTALAQIMTIRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGW  322 (361)
T ss_dssp             TCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTEEEEESSCCCCCCHHHHHHHHC----------------------C
T ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCccchhhhhhccccccccccCcchhhhHHHHhhcccccccccccccccccccccccc
Confidence            999984211100 000                                0000000000                000112


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ..+++++.+|+.+||+.|  |.+|||+.|+++
T Consensus       323 ~~is~~a~DLl~~lL~~d--P~~R~ta~eaL~  352 (361)
T 4f9c_A          323 NEVPDEAYDLLDKLLDLN--PASRITAEEALL  352 (361)
T ss_dssp             TTCCHHHHHHHHHHTCSC--TTTSCCHHHHHT
T ss_pred             ccCCHHHHHHHHHHCcCC--hhHCcCHHHHhc
Confidence            346788999999999999  889999998864

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=7.4e-39  Score=338.79  Aligned_cols=249  Identities=26%  Similarity=0.462  Sum_probs=201.7

Q ss_pred             ccccccCHHHHHHhhcCccccccccccCCceEEEEEEE-CCeeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCcccee
Q 005680          321 CAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRL-NHASVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVM  396 (683)
Q Consensus       321 ~~~~~~s~~ei~~at~~F~~~~~liG~G~fG~Vykg~~-~g~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~  396 (683)
                      ...+.|++.++..++++|... +++|+|+||.||+|.. +|..||||++....   ....+.+|+.+++.++||||++++
T Consensus        15 ~~~~~~~~~~~~~~~~~y~~~-~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~   93 (326)
T 3uim_A           15 GQLKRFSLRELQVASDNFSNK-NILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLR   93 (326)
T ss_dssp             CCCEECCTHHHHTTTTSSCST-TEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCC
T ss_pred             CccceecHHHHHHHhhccccc-eeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceE
Confidence            356789999999999999775 5678999999999987 68999999997332   234789999999999999999999


Q ss_pred             ccccc--ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccc
Q 005680          397 GCCSE--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL  474 (683)
Q Consensus       397 g~~~~--~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILl  474 (683)
                      ++|.+  ..++||||+++|+|.+++....      .....+++..+..|+.||+.||.|||+....+|+||||||+|||+
T Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~  167 (326)
T 3uim_A           94 GFCMTPTERLLVYPYMANGSVASCLRERP------ESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILL  167 (326)
T ss_dssp             EEECCSSCCEEEEECCTTCBHHHHHHCCS------TTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEE
T ss_pred             EEEecCCceEEEEEeccCCCHHHHHHhcc------ccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEE
Confidence            99966  7899999999999999996442      244569999999999999999999999422279999999999999


Q ss_pred             cCCCcEEEecCCCccc--------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh--
Q 005680          475 DRNLVAKISGLGLNIC--------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD--  526 (683)
Q Consensus       475 d~~~~~KL~DFGla~~--------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~--  526 (683)
                      +.++.+||+|||++..                          ..++.++|||||||++|+|+||++||..........  
T Consensus       168 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~  247 (326)
T 3uim_A          168 DEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVM  247 (326)
T ss_dssp             CTTCCEEECCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSB
T ss_pred             CCCCCEEeccCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchh
Confidence            9999999999999852                          235789999999999999999999996432211000  


Q ss_pred             -HHHH---------HHHhcC-CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHH
Q 005680          527 -QTTL---------MQVLDG-NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDE  578 (683)
Q Consensus       527 -~~~~---------~~ild~-~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~  578 (683)
                       ...+         ..+.+. ....++...+..+.+++.+||+.|  |..|||+.+|++.|+.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~d--P~~Rps~~ell~~L~~  308 (326)
T 3uim_A          248 LLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSS--PMERPKMSEVVRMLEG  308 (326)
T ss_dssp             HHHHHTTTTSSCCSTTSSCTTCTTSCCHHHHHHHHHHHHHHTCSC--GGGSCCHHHHHHHHHT
T ss_pred             HHHHHHHHhhchhhhhhcChhhccccCHHHHHHHHHHHHHHhCcC--CccCCCHHHHHHHhcC
Confidence             0001         111111 223456678899999999999999  8899999999999975

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=7.3e-39  Score=338.60  Aligned_cols=233  Identities=27%  Similarity=0.394  Sum_probs=189.5

Q ss_pred             hhcCccccccccccCCceEEEEEEECCeeEEEEEcCCCC-C---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEE
Q 005680          334 ATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGL-S---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVF  407 (683)
Q Consensus       334 at~~F~~~~~liG~G~fG~Vykg~~~g~~VAvK~l~~~~-~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~  407 (683)
                      ..++|.. .+.+|.|+||.||+|.++|..||||++.... .   ...+.+|+.++++++|||||++++++.+  ..++||
T Consensus        35 ~~~~y~i-~~~lG~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  113 (309)
T 3p86_A           35 PWCDLNI-KEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVT  113 (309)
T ss_dssp             CGGGEEE-EEEEEECSSEEEEEEEETTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEE
T ss_pred             ChhHcee-eeEeecCCCeEEEEEEECCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEE
Confidence            3445544 3567899999999999999999999987332 2   2468899999999999999999999976  789999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCC
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL  487 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGl  487 (683)
                      ||+++|+|.+++...       .....+++..++.++.||+.||.|||+.+ .+|+||||||+|||++.++.+||+|||+
T Consensus       114 e~~~~~~L~~~l~~~-------~~~~~~~~~~~~~i~~qi~~aL~~LH~~~-~~ivH~Dikp~NIll~~~~~~kL~Dfg~  185 (309)
T 3p86_A          114 EYLSRGSLYRLLHKS-------GAREQLDERRRLSMAYDVAKGMNYLHNRN-PPIVHRNLKSPNLLVDKKYTVKVCDFGL  185 (309)
T ss_dssp             ECCTTCBHHHHHHST-------THHHHSCHHHHHHHHHHHHHHHHHHHTSS-SCCCCTTCCGGGEEECTTCCEEECCCC-
T ss_pred             ecCCCCcHHHHHhhc-------CCCCCCCHHHHHHHHHHHHHHHHHHHcCC-CCEECCCCChhhEEEeCCCcEEECCCCC
Confidence            999999999999533       22345999999999999999999999933 2399999999999999999999999998


Q ss_pred             ccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHH-hcCCCCCC
Q 005680          488 NIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQV-LDGNAGIW  541 (683)
Q Consensus       488 a~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~i-ld~~~~~~  541 (683)
                      ++.                         ..++.++|||||||++|+|+||+.||......     .....+ ........
T Consensus       186 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~-----~~~~~~~~~~~~~~~  260 (309)
T 3p86_A          186 SRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPA-----QVVAAVGFKCKRLEI  260 (309)
T ss_dssp             ----------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHH-----HHHHHHHHSCCCCCC
T ss_pred             CccccccccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-----HHHHHHHhcCCCCCC
Confidence            843                         24678999999999999999999999753221     111122 23345566


Q ss_pred             ChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          542 PLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       542 p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      |..+++.+.+|+.+||+.|  |..|||+.++++.|+.+.+.
T Consensus       261 ~~~~~~~l~~li~~~l~~d--P~~Rps~~~ll~~L~~~~~~  299 (309)
T 3p86_A          261 PRNLNPQVAAIIEGCWTNE--PWKRPSFATIMDLLRPLIKS  299 (309)
T ss_dssp             CTTSCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHC-
T ss_pred             CccCCHHHHHHHHHHccCC--hhhCcCHHHHHHHHHHHHHh
Confidence            7788999999999999999  88999999999999998754

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=1e-38  Score=339.58  Aligned_cols=224  Identities=27%  Similarity=0.442  Sum_probs=190.4

Q ss_pred             ccccccCCceEEEEEEE-----CCeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          342 FRLKCAGDWTNVYRGRL-----NHASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~-----~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      .+++|+|+||.||+|.+     .+..||||++.....   ...+.+|+.++.+++|||||+++++|.+  ..+|||||++
T Consensus        54 ~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  133 (325)
T 3kul_A           54 EKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYME  133 (325)
T ss_dssp             EEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEEEECCT
T ss_pred             eeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEEeeCCC
Confidence            46788999999999998     245699999984433   3568999999999999999999999976  7899999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      +|+|.+++..         ....+++..++.|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++. 
T Consensus       134 ~~~L~~~l~~---------~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~  201 (325)
T 3kul_A          134 NGSLDTFLRT---------HDGQFTIMQLVGMLRGVGAGMRYLSD---LGYVHRDLAARNVLVDSNLVCKVSDFGLSRVL  201 (325)
T ss_dssp             TCBHHHHHHT---------TTTCSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCSSCEEC
T ss_pred             CCcHHHHHHh---------cccCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCcceEEECCCCCEEECCCCccccc
Confidence            9999999942         33569999999999999999999999   6799999999999999999999999999853 


Q ss_pred             ---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCC
Q 005680          491 ---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWP  542 (683)
Q Consensus       491 ---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p  542 (683)
                                                 ..++.++|||||||++|+|++ |..||.....     ......+........+
T Consensus       202 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~  276 (325)
T 3kul_A          202 EDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTN-----RDVISSVEEGYRLPAP  276 (325)
T ss_dssp             C----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCH-----HHHHHHHHTTCCCCCC
T ss_pred             ccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCH-----HHHHHHHHcCCCCCCC
Confidence                                       235778999999999999999 9999865322     2233344444556667


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhcc
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKAD  584 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~~  584 (683)
                      ..++..+.+|+.+||..|  |..|||+.+|++.|+.+.+...
T Consensus       277 ~~~~~~l~~li~~~l~~d--p~~Rps~~eil~~L~~l~~~~~  316 (325)
T 3kul_A          277 MGCPHALHQLMLDCWHKD--RAQRPRFSQIVSVLDALIRSPE  316 (325)
T ss_dssp             TTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHSCC
T ss_pred             CCcCHHHHHHHHHHccCC--hhhCcCHHHHHHHHHHHHhCcc
Confidence            788999999999999999  8899999999999999986543

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=2.6e-39  Score=370.77  Aligned_cols=219  Identities=21%  Similarity=0.299  Sum_probs=181.5

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC--CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEee
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL--SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEY  409 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~--~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey  409 (683)
                      ++|. ..+.+|+|+||.||+|..  +|+.||||++....  ..+.+.+|+.+|+.++|||||+++++|.+  ..||||||
T Consensus       157 ~~Y~-i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~  235 (573)
T 3uto_A          157 DHYD-IHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF  235 (573)
T ss_dssp             GTEE-EEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             cccE-EEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEee
Confidence            3443 346778999999999998  68999999987332  34678899999999999999999999976  78999999


Q ss_pred             cCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC--CcEEEecCCC
Q 005680          410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN--LVAKISGLGL  487 (683)
Q Consensus       410 ~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~--~~~KL~DFGl  487 (683)
                      |+||+|.++|.         .....+++..+..|+.||+.||.|||+   ++|+||||||+|||++.+  +.+||+|||+
T Consensus       236 ~~gg~L~~~i~---------~~~~~l~e~~~~~~~~qi~~al~ylH~---~~iiHRDlKp~Nill~~~~~~~vKl~DFG~  303 (573)
T 3uto_A          236 MSGGELFEKVA---------DEHNKMSEDEAVEYMRQVCKGLCHMHE---NNYVHLDLKPENIMFTTKRSNELKLIDFGL  303 (573)
T ss_dssp             CCCCBHHHHHT---------CTTSCEEHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSCCCEEECCCSS
T ss_pred             cCCCcHHHHHH---------HhCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCChhhccccCCCCCCEEEeeccc
Confidence            99999999984         234579999999999999999999999   779999999999999854  8999999999


Q ss_pred             ccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCC---CC
Q 005680          488 NIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNA---GI  540 (683)
Q Consensus       488 a~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~---~~  540 (683)
                      |+.                        ..|+.++|||||||++|+|++|++||.....     ...+..+.....   ..
T Consensus       304 a~~~~~~~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~-----~~~~~~i~~~~~~~~~~  378 (573)
T 3uto_A          304 TAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEND-----DETLRNVKSCDWNMDDS  378 (573)
T ss_dssp             CEECCTTSEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH-----HHHHHHHHTTCCCCCSG
T ss_pred             eeEccCCCceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH-----HHHHHHHHhCCCCCCcc
Confidence            853                        3578899999999999999999999975322     222333333211   12


Q ss_pred             CChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          541 WPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       541 ~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .+..+++++.+||.+||+.|  |.+|||+.++++
T Consensus       379 ~~~~~s~~~~dli~~~L~~d--p~~R~t~~e~l~  410 (573)
T 3uto_A          379 AFSGISEDGKDFIRKLLLAD--PNTRMTIHQALE  410 (573)
T ss_dssp             GGTTSCHHHHHHHHTTSCSS--GGGSCCHHHHHH
T ss_pred             cccCCCHHHHHHHHHHccCC--hhHCcCHHHHhc
Confidence            22457899999999999999  889999999876

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=6.3e-39  Score=339.27  Aligned_cols=248  Identities=29%  Similarity=0.493  Sum_probs=199.1

Q ss_pred             cccCHHHHHHhhcCccccccccccCCceEEEEEEE-CCeeEEEEEcCCC--CCHHHHHHHHHHHHhcCCCCccceecccc
Q 005680          324 REYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRL-NHASVAIKTLNNG--LSEEDFQAKVSFLTAVRHPHLVAVMGCCS  400 (683)
Q Consensus       324 ~~~s~~ei~~at~~F~~~~~liG~G~fG~Vykg~~-~g~~VAvK~l~~~--~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~  400 (683)
                      ..+++.++..++++|... +++|+|+||.||+|.+ +|..||||++...  .....+.+|+.+++.++|||||+++++|.
T Consensus        27 ~~~~~~~~~~~~~~y~~~-~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~  105 (321)
T 2qkw_B           27 YRVPLVDLEEATNNFDHK-FLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCD  105 (321)
T ss_dssp             ---CCSCCCCCCCCCSCC-CCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECC
T ss_pred             eeecHHHHHHHHhccCcc-ceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEc
Confidence            456667777888998765 5678999999999998 5899999998733  33467999999999999999999999996


Q ss_pred             c--ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCC
Q 005680          401 E--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL  478 (683)
Q Consensus       401 ~--~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~  478 (683)
                      +  ..++||||+++|+|.+++....      .....+++..++.++.||+.||.|||+   .+|+||||||+|||++.++
T Consensus       106 ~~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~ivH~dlkp~Nil~~~~~  176 (321)
T 2qkw_B          106 ERNEMILIYKYMENGNLKRHLYGSD------LPTMSMSWEQRLEICIGAARGLHYLHT---RAIIHRDVKSINILLDENF  176 (321)
T ss_dssp             CTTCCEEEEECCTTCBTGGGSSSSC------CCSCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCSTTEEECTTC
T ss_pred             CCCeEEEEEEcCCCCcHHHHHhccC------CCccccCHHHHHHHHHHHHHHHHHhcC---CCeecCCCCHHHEEECCCC
Confidence            6  7899999999999999995431      233469999999999999999999999   6799999999999999999


Q ss_pred             cEEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh-----
Q 005680          479 VAKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD-----  526 (683)
Q Consensus       479 ~~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~-----  526 (683)
                      .+||+|||++..                           ..++.++|||||||++|+|+||++||..........     
T Consensus       177 ~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~  256 (321)
T 2qkw_B          177 VPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWA  256 (321)
T ss_dssp             CEEECCCTTCEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHT
T ss_pred             CEEEeecccccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHh
Confidence            999999998742                           346789999999999999999999985321100000     


Q ss_pred             -----HHHHHHHhcC-CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          527 -----QTTLMQVLDG-NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       527 -----~~~~~~ild~-~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                           ...+..++++ .....+..++..+.+++.+||+.|  |..|||+.+|++.|+.+.+..
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d--P~~Rps~~ell~~L~~~l~~~  317 (321)
T 2qkw_B          257 VESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALS--SEDRPSMGDVLWKLEYALRLQ  317 (321)
T ss_dssp             HHHHTTTCCCSSSSSSCTTCSCHHHHHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHSS
T ss_pred             hhccccccHHHhcChhhccccCHHHHHHHHHHHHHHcCCC--cccCcCHHHHHHHHHHHhhcc
Confidence                 0001111222 223456678999999999999999  889999999999999987643

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=4e-38  Score=324.14  Aligned_cols=221  Identities=25%  Similarity=0.421  Sum_probs=190.4

Q ss_pred             ccccccCCceEEEEEEE-CCeeEEEEEcCC-CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCchh
Q 005680          342 FRLKCAGDWTNVYRGRL-NHASVAIKTLNN-GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRD  417 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~-~g~~VAvK~l~~-~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~  417 (683)
                      .+.+|.|+||.||+|.+ ++..||||++.. ....+.+.+|+.++.+++||||+++++++.+  ..++||||+++|+|.+
T Consensus        15 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~   94 (269)
T 4hcu_A           15 VQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSD   94 (269)
T ss_dssp             EEEEEECSSCEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHH
T ss_pred             eheecCCCccEEEEEEecCCCeEEEEEecccccCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCCCCcHHH
Confidence            35678999999999998 788999999983 3456789999999999999999999999976  7899999999999999


Q ss_pred             hhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-------
Q 005680          418 KLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-------  490 (683)
Q Consensus       418 ~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-------  490 (683)
                      ++..         ....+++..++.++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..       
T Consensus        95 ~l~~---------~~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  162 (269)
T 4hcu_A           95 YLRT---------QRGLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYT  162 (269)
T ss_dssp             HHHT---------TTTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHH
T ss_pred             HHHh---------cCcccCHHHHHHHHHHHHHHHHHHHh---CCeecCCcchheEEEcCCCCEEeccccccccccccccc
Confidence            9952         34568999999999999999999999   6799999999999999999999999999853       


Q ss_pred             -------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHH
Q 005680          491 -------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELA  550 (683)
Q Consensus       491 -------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~  550 (683)
                                         ..++.++||||||+++|+|++ |++||.....     ......+........|..+++.+.
T Consensus       163 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  237 (269)
T 4hcu_A          163 SSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN-----SEVVEDISTGFRLYKPRLASTHVY  237 (269)
T ss_dssp             STTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH-----HHHHHHHHTTCCCCCCTTSCHHHH
T ss_pred             cccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCH-----HHHHHHHhcCccCCCCCcCCHHHH
Confidence                               346789999999999999999 9999975322     223334444445556667889999


Q ss_pred             HHHHHhhhcCCCccccccHHHHHHHHHHHHH
Q 005680          551 GIALKCLSADQDANRDLRIAGVMKELDEVRK  581 (683)
Q Consensus       551 ~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~  581 (683)
                      +|+.+||+.|  |..|||+.++++.|+.+.+
T Consensus       238 ~li~~~l~~~--p~~Rps~~~ll~~l~~l~~  266 (269)
T 4hcu_A          238 QIMNHCWRER--PEDRPAFSRLLRQLAEIAE  266 (269)
T ss_dssp             HHHHHHTCSS--GGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHccCC--cccCcCHHHHHHHHHHHHH
Confidence            9999999999  8899999999999999875

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=3.1e-38  Score=351.31  Aligned_cols=223  Identities=25%  Similarity=0.383  Sum_probs=193.4

Q ss_pred             ccccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccccc---ceeEEEeecCCCCchhh
Q 005680          342 FRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE---LKCIVFEYMPNGNLRDK  418 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~---~~~LV~Ey~~ggsL~~~  418 (683)
                      .+.+|+|+||.||+|.+.|..||||+++.....+.|.+|+.+|++++|||||+++++|.+   ..||||||+++|+|.++
T Consensus       198 ~~~lG~G~fg~V~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~~~~g~L~~~  277 (450)
T 1k9a_A          198 LQTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDY  277 (450)
T ss_dssp             EEEEEECSSEEEEEEEETTEEEEEEEESSCTTSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEECCTTCBHHHH
T ss_pred             EeeecCcCCeeEEEEEecCCeEEEEEeCCchHHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEecCCCcHHHH
Confidence            357789999999999999999999999866667889999999999999999999999744   68999999999999999


Q ss_pred             hhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--------
Q 005680          419 LFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--------  490 (683)
Q Consensus       419 L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--------  490 (683)
                      +...        ....+++..++.++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++.        
T Consensus       278 l~~~--------~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~  346 (450)
T 1k9a_A          278 LRSR--------GRSVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTG  346 (450)
T ss_dssp             HHHH--------CTTTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTSCEEECCCTTCEECC------
T ss_pred             HHhc--------CCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCHhhEEECCCCCEEEeeCCCcccccccccCC
Confidence            9533        23457999999999999999999999   6799999999999999999999999999853        


Q ss_pred             --------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHH
Q 005680          491 --------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALK  555 (683)
Q Consensus       491 --------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~  555 (683)
                                    ..++.++|||||||++|||+| |+.||.....     ......+..+.....|..+++.+.+|+.+
T Consensus       347 ~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~-----~~~~~~i~~~~~~~~p~~~~~~l~~li~~  421 (450)
T 1k9a_A          347 KLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL-----KDVVPRVEKGYKMDAPDGCPPAVYDVMKN  421 (450)
T ss_dssp             CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCT-----TTHHHHHHTTCCCCCCTTCCHHHHHHHHH
T ss_pred             CCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH-----HHHHHHHHcCCCCCCCCcCCHHHHHHHHH
Confidence                          347889999999999999998 9999975322     12233444455566777899999999999


Q ss_pred             hhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          556 CLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       556 CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      ||+.|  |..|||+.+++..|+.+...
T Consensus       422 cl~~d--p~~Rpt~~~l~~~L~~i~~~  446 (450)
T 1k9a_A          422 CWHLD--AATRPTFLQLREQLEHIRTH  446 (450)
T ss_dssp             HTCSS--GGGSCCHHHHHHHHHHHHHT
T ss_pred             HcCCC--hhHCcCHHHHHHHHHHHHHh
Confidence            99999  88999999999999998753

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=3e-38  Score=329.42  Aligned_cols=229  Identities=21%  Similarity=0.379  Sum_probs=188.7

Q ss_pred             cccccccCCceEEEEEEE------CCeeEEEEEcCCCCC--HHHHHHHHHHHHhcCCCCccceeccccc----ceeEEEe
Q 005680          341 RFRLKCAGDWTNVYRGRL------NHASVAIKTLNNGLS--EEDFQAKVSFLTAVRHPHLVAVMGCCSE----LKCIVFE  408 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~------~g~~VAvK~l~~~~~--~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----~~~LV~E  408 (683)
                      ..+.+|+|+||.||+|.+      +|..||||++.....  ...+.+|+.++.+++||||++++++|..    ..++|||
T Consensus        14 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e   93 (295)
T 3ugc_A           14 FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIME   93 (295)
T ss_dssp             EEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSCEEEEE
T ss_pred             hhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCceEEEEE
Confidence            346778999999999985      578999999974332  3578899999999999999999999854    5799999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCc
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN  488 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla  488 (683)
                      |+++|+|.+++..         ....+++..++.++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++
T Consensus        94 ~~~~~~L~~~l~~---------~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~  161 (295)
T 3ugc_A           94 YLPYGSLRDYLQK---------HKERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFGLT  161 (295)
T ss_dssp             CCTTCBHHHHHHH---------CGGGCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCCCSC
T ss_pred             eCCCCCHHHHHHh---------cccccCHHHHHHHHHHHHHHHHHHhc---CCcccCCCCHhhEEEcCCCeEEEccCccc
Confidence            9999999999953         23459999999999999999999999   67999999999999999999999999998


Q ss_pred             cc----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhh-----------hhHHH
Q 005680          489 IC----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMA-----------LDQTT  529 (683)
Q Consensus       489 ~~----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~-----------~~~~~  529 (683)
                      ..                            ..++.++|||||||++|+|+||..|+........           .....
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (295)
T 3ugc_A          162 KVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHL  241 (295)
T ss_dssp             C-------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHH
T ss_pred             ccccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHH
Confidence            53                            2467899999999999999999998864332100           00112


Q ss_pred             HHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          530 LMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       530 ~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      ...+........|..+++.+.+|+.+||+.|  |..|||+.++++.|+.+++..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d--p~~Rps~~el~~~L~~l~~~l  293 (295)
T 3ugc_A          242 IELLKNNGRLPRPDGCPDEIYMIMTECWNNN--VNQRPSFRDLALRVDQIRDNM  293 (295)
T ss_dssp             HHHHHTTCCCCCCTTCCHHHHHHHHHHSCSS--GGGSCCHHHHHHHHHHHHHC-
T ss_pred             HHHHhccCcCCCCcCcCHHHHHHHHHHcCCC--hhhCCCHHHHHHHHHHHHHhc
Confidence            2233334455667788999999999999999  889999999999999998653

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=2.4e-38  Score=343.80  Aligned_cols=227  Identities=24%  Similarity=0.382  Sum_probs=190.4

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCCH---HHHHHHHHHHHhcCCCCccceeccccc--ceeEEEe
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFE  408 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~---~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~E  408 (683)
                      ++|.. .+.+|+|+||.||+|.+  ++..||||+++.....   ..|.+|+.+|++++|||||+++|+|.+  ..|||||
T Consensus       114 ~~~~~-~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e  192 (377)
T 3cbl_A          114 EDLVL-GEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVME  192 (377)
T ss_dssp             GGEEE-EEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             HHeEE-eeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEE
Confidence            34433 35678999999999999  5899999999744332   468899999999999999999999976  7899999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCc
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN  488 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla  488 (683)
                      |+++|+|.+++..         ....+++..++.++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++
T Consensus       193 ~~~~g~L~~~l~~---------~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~Nil~~~~~~~kl~DfG~s  260 (377)
T 3cbl_A          193 LVQGGDFLTFLRT---------EGARLRVKTLLQMVGDAAAGMEYLES---KCCIHRDLAARNCLVTEKNVLKISDFGMS  260 (377)
T ss_dssp             CCTTCBHHHHHHH---------HGGGCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCGGGC
T ss_pred             cCCCCCHHHHHHh---------cCCCCCHHHHHHHHHHHHHHHHHHHH---CCcCCcccCHHHEEEcCCCcEEECcCCCc
Confidence            9999999999952         23468999999999999999999999   67999999999999999999999999987


Q ss_pred             cc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCC
Q 005680          489 IC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGI  540 (683)
Q Consensus       489 ~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~  540 (683)
                      +.                           ..++.++|||||||++|||+| |.+||.....     ......+.......
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~-----~~~~~~~~~~~~~~  335 (377)
T 3cbl_A          261 REEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSN-----QQTREFVEKGGRLP  335 (377)
T ss_dssp             EECTTSEEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCH-----HHHHHHHHTTCCCC
T ss_pred             eecCCCceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH-----HHHHHHHHcCCCCC
Confidence            52                           235678999999999999998 9999975322     11222233344556


Q ss_pred             CChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          541 WPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       541 ~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      .|..+++.+.+|+.+||+.|  |..|||+.++++.|+.+++.
T Consensus       336 ~~~~~~~~l~~li~~cl~~d--P~~Rps~~~i~~~L~~i~~~  375 (377)
T 3cbl_A          336 CPELCPDAVFRLMEQCWAYE--PGQRPSFSTIYQELQSIRKR  375 (377)
T ss_dssp             CCTTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHcCCC--chhCcCHHHHHHHHHHHHhh
Confidence            67778899999999999999  88999999999999999764

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=4.4e-38  Score=323.27  Aligned_cols=222  Identities=25%  Similarity=0.454  Sum_probs=188.2

Q ss_pred             ccccccCCceEEEEEEE-CCeeEEEEEcCC-CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCchh
Q 005680          342 FRLKCAGDWTNVYRGRL-NHASVAIKTLNN-GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRD  417 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~-~g~~VAvK~l~~-~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~  417 (683)
                      .+.+|+|+||.||+|.+ ++..||||++.. ......+.+|+.++.+++||||+++++++.+  ..++||||+++|+|.+
T Consensus        13 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~   92 (268)
T 3sxs_A           13 LKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLN   92 (268)
T ss_dssp             EEEEEEETTEEEEEEEETTTEEEEEEEECBTTBCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHH
T ss_pred             eeeeccCCCceEEEEEecCceeEEEEEeccCCCcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEccCCCcHHH
Confidence            35678999999999998 567899999983 3456789999999999999999999999976  7899999999999999


Q ss_pred             hhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-------
Q 005680          418 KLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-------  490 (683)
Q Consensus       418 ~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-------  490 (683)
                      ++..         ....+++..++.|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..       
T Consensus        93 ~l~~---------~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~  160 (268)
T 3sxs_A           93 YLRS---------HGKGLEPSQLLEMCYDVCEGMAFLES---HQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYV  160 (268)
T ss_dssp             HHHH---------HGGGCCHHHHHHHHHHHHHHHHHHHH---TTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCEE
T ss_pred             HHHH---------cCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCcCcceEEECCCCCEEEccCccceecchhhhh
Confidence            9952         23469999999999999999999999   6799999999999999999999999998853       


Q ss_pred             -------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHH
Q 005680          491 -------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELA  550 (683)
Q Consensus       491 -------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~  550 (683)
                                         ..++.++||||||+++|+|+| |++||.....     ......+........|..+++.+.
T Consensus       161 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~  235 (268)
T 3sxs_A          161 SSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTN-----SEVVLKVSQGHRLYRPHLASDTIY  235 (268)
T ss_dssp             ECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCH-----HHHHHHHHTTCCCCCCTTSCHHHH
T ss_pred             cccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccCh-----HHHHHHHHcCCCCCCCCcChHHHH
Confidence                               246789999999999999999 9999975322     222333444444555666788999


Q ss_pred             HHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          551 GIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       551 ~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      +++.+||+.|  |..|||+.++++.|+.+++.
T Consensus       236 ~li~~~l~~~--p~~Rps~~~ll~~L~~l~~~  265 (268)
T 3sxs_A          236 QIMYSCWHEL--PEKRPTFQQLLSSIEPLREK  265 (268)
T ss_dssp             HHHHHTTCSS--GGGSCCHHHHHHHHGGGCC-
T ss_pred             HHHHHHcCCC--hhhCcCHHHHHHHHHHhhhc
Confidence            9999999999  88999999999999887543

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=1.7e-37  Score=321.40  Aligned_cols=227  Identities=23%  Similarity=0.391  Sum_probs=189.4

Q ss_pred             cCccccccccccCCceEEEEEEE-CCeeEEEEEcCC-CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL-NHASVAIKTLNN-GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~-~g~~VAvK~l~~-~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      ++|.. .+.+|+|+||.||+|.+ ++..||||++.. ......+.+|+.++.+++||||++++++|.+  ..++||||++
T Consensus        24 ~~y~~-~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~  102 (283)
T 3gen_A           24 KDLTF-LKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMA  102 (283)
T ss_dssp             GGEEE-EEECC---CEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCCT
T ss_pred             HHHHh-HhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEeccC
Confidence            44433 35678999999999998 567899999983 3456789999999999999999999999976  7899999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      +|+|.+++..         ....+++..++.|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++.. 
T Consensus       103 ~~~L~~~l~~---------~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~  170 (283)
T 3gen_A          103 NGCLLNYLRE---------MRHRFQTQQLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYV  170 (283)
T ss_dssp             TCBHHHHHHC---------GGGCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCSGGGEEECTTSCEEECSTTGGGGB
T ss_pred             CCcHHHHHHH---------hccCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCccceEEEcCCCCEEEccccccccc
Confidence            9999999952         24569999999999999999999999   6799999999999999999999999999852 


Q ss_pred             -------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChh
Q 005680          491 -------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLD  544 (683)
Q Consensus       491 -------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~  544 (683)
                                               ..++.++||||||+++|+|+| |++||.....     ......+........|..
T Consensus       171 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~  245 (283)
T 3gen_A          171 LDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTN-----SETAEHIAQGLRLYRPHL  245 (283)
T ss_dssp             CCHHHHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCH-----HHHHHHHHTTCCCCCCTT
T ss_pred             cccccccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccCh-----hHHHHHHhcccCCCCCCc
Confidence                                     346789999999999999998 9999975322     222334444445555667


Q ss_pred             hHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          545 LAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      +++.+.+|+.+||+.|  |..|||+.++++.|..+...
T Consensus       246 ~~~~l~~li~~~l~~~--p~~Rps~~~ll~~L~~~~~~  281 (283)
T 3gen_A          246 ASEKVYTIMYSCWHEK--ADERPTFKILLSNILDVMDE  281 (283)
T ss_dssp             CCHHHHHHHHHTTCSS--GGGSCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHccCC--hhHCcCHHHHHHHHHHHhhc
Confidence            7899999999999999  88999999999999998753

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=8.3e-38  Score=339.08  Aligned_cols=231  Identities=20%  Similarity=0.341  Sum_probs=189.6

Q ss_pred             ccccccCCceEEEEEEE---------CCeeEEEEEcCCCCC---HHHHHHHHHHHHhc-CCCCccceeccccc--ceeEE
Q 005680          342 FRLKCAGDWTNVYRGRL---------NHASVAIKTLNNGLS---EEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~---------~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV  406 (683)
                      .+.+|+|+||.||+|.+         ++..||||+++....   ...+.+|+.++.++ +|||||+++++|.+  ..|+|
T Consensus        86 ~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~lv  165 (370)
T 2psq_A           86 GKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVI  165 (370)
T ss_dssp             EEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSSSSCEEE
T ss_pred             eeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccCCCEEEE
Confidence            46788999999999986         235799999974433   35689999999999 89999999999966  78999


Q ss_pred             EeecCCCCchhhhhhcccccc------cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcE
Q 005680          407 FEYMPNGNLRDKLFTSQRNYK------NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVA  480 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~------~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~  480 (683)
                      |||+++|+|.+++........      .......+++..++.|+.||+.||.|||+   .+|+||||||+||||+.++.+
T Consensus       166 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~~  242 (370)
T 2psq_A          166 VEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QKCIHRDLAARNVLVTENNVM  242 (370)
T ss_dssp             EECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCE
T ss_pred             EEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCeeccccchhhEEECCCCCE
Confidence            999999999999965421000      00123468999999999999999999999   679999999999999999999


Q ss_pred             EEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHH
Q 005680          481 KISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQ  532 (683)
Q Consensus       481 KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~  532 (683)
                      ||+|||+++.                           ..++.++|||||||++|||+| |.+||.....     ......
T Consensus       243 kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~-----~~~~~~  317 (370)
T 2psq_A          243 KIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV-----EELFKL  317 (370)
T ss_dssp             EECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG-----GGHHHH
T ss_pred             EEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCH-----HHHHHH
Confidence            9999999852                           246789999999999999999 9999975321     222233


Q ss_pred             HhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          533 VLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       533 ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      +........|..++..+.+|+.+||+.|  |..|||+.++++.|+.+...
T Consensus       318 ~~~~~~~~~~~~~~~~l~~li~~~l~~d--P~~Rpt~~ell~~L~~il~~  365 (370)
T 2psq_A          318 LKEGHRMDKPANCTNELYMMMRDCWHAV--PSQRPTFKQLVEDLDRILTL  365 (370)
T ss_dssp             HHTTCCCCCCTTSCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHH
T ss_pred             HhcCCCCCCCCCCCHHHHHHHHHHcCCC--hhhCcCHHHHHHHHHHHHHH
Confidence            4444555667788999999999999999  88999999999999998754

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=1.1e-37  Score=331.20  Aligned_cols=231  Identities=16%  Similarity=0.193  Sum_probs=189.7

Q ss_pred             cccCHHHHHHhhcCc---------cccccccccCCceEEEEEEE--CCeeEEEEEcC--CCCCHHHHHHHHHHHHhcCCC
Q 005680          324 REYAAEDIRLATEDF---------SERFRLKCAGDWTNVYRGRL--NHASVAIKTLN--NGLSEEDFQAKVSFLTAVRHP  390 (683)
Q Consensus       324 ~~~s~~ei~~at~~F---------~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~--~~~~~~~~~~Ev~iL~~l~Hp  390 (683)
                      ..|+++++..+++.+         ......+|+|+||.||+|..  +|+.||||++.  .....+.+.+|+.++++++||
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~  102 (321)
T 2c30_A           23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF  102 (321)
T ss_dssp             --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred             CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence            468999999988752         33345788999999999998  68999999987  333457799999999999999


Q ss_pred             Cccceeccccc--ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCC
Q 005680          391 HLVAVMGCCSE--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLT  468 (683)
Q Consensus       391 nIV~l~g~~~~--~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLK  468 (683)
                      |||+++++|..  ..++||||+++|+|.+++.           ...+++..+..++.||+.||.|||+   .+|+|||||
T Consensus       103 niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~-----------~~~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlk  168 (321)
T 2c30_A          103 NVVEMYKSYLVGEELWVLMEFLQGGALTDIVS-----------QVRLNEEQIATVCEAVLQALAYLHA---QGVIHRDIK  168 (321)
T ss_dssp             TBCCEEEEEEETTEEEEEECCCCSCBHHHHHT-----------TCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCS
T ss_pred             CcceEEEEEEECCEEEEEEecCCCCCHHHHHH-----------hcCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCC
Confidence            99999999865  7899999999999999983           2469999999999999999999999   679999999


Q ss_pred             CCcccccCCCcEEEecCCCccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHh
Q 005680          469 PSSILLDRNLVAKISGLGLNIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAM  523 (683)
Q Consensus       469 P~NILld~~~~~KL~DFGla~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~  523 (683)
                      |+|||++.++.+||+|||++..                         ..++.++|||||||++|+|++|++||...... 
T Consensus       169 p~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~-  247 (321)
T 2c30_A          169 SDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPV-  247 (321)
T ss_dssp             GGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH-
T ss_pred             HHHEEECCCCcEEEeeeeeeeecccCccccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-
Confidence            9999999999999999998742                         24678999999999999999999999643221 


Q ss_pred             hhhHHHHHHHhcCCCC--CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          524 ALDQTTLMQVLDGNAG--IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       524 ~~~~~~~~~ild~~~~--~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                          ..+..+.....+  ..+..+++.+.+|+.+||+.|  |..|||+.++++.
T Consensus       248 ----~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d--p~~Rps~~ell~h  295 (321)
T 2c30_A          248 ----QAMKRLRDSPPPKLKNSHKVSPVLRDFLERMLVRD--PQERATAQELLDH  295 (321)
T ss_dssp             ----HHHHHHHHSSCCCCTTGGGSCHHHHHHHHHHSCSS--TTTSCCHHHHHTS
T ss_pred             ----HHHHHHhcCCCCCcCccccCCHHHHHHHHHHccCC--hhhCcCHHHHhcC
Confidence                112222222222  223467889999999999999  8899999998763

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=7e-38  Score=328.78  Aligned_cols=212  Identities=18%  Similarity=0.270  Sum_probs=178.4

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcC--CCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCc
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLN--NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNL  415 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~--~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL  415 (683)
                      .+.+|+|+||.||+|..  +|..||||++.  .....+.+.+|+.+++.++|||||+++++|.+  ..++||||++||+|
T Consensus        25 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L  104 (297)
T 3fxz_A           25 FEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSL  104 (297)
T ss_dssp             CEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBH
T ss_pred             eeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEECCCCCCH
Confidence            45678999999999987  68999999986  33446778999999999999999999999865  78999999999999


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-----
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-----  490 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-----  490 (683)
                      .+++.           ...+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..     
T Consensus       105 ~~~~~-----------~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  170 (297)
T 3fxz_A          105 TDVVT-----------ETCMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ  170 (297)
T ss_dssp             HHHHH-----------HSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred             HHHHh-----------hcCCCHHHHHHHHHHHHHHHHHHHh---CCceeCCCCHHHEEECCCCCEEEeeCCCceecCCcc
Confidence            99993           2358999999999999999999999   6799999999999999999999999998742     


Q ss_pred             --------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhc--CCCCCCChhhHHH
Q 005680          491 --------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLD--GNAGIWPLDLAEE  548 (683)
Q Consensus       491 --------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild--~~~~~~p~~~~~~  548 (683)
                                          ..++.++|||||||++|+|+||.+||......     .....+..  ......|..++..
T Consensus       171 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  245 (297)
T 3fxz_A          171 SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPL-----RALYLIATNGTPELQNPEKLSAI  245 (297)
T ss_dssp             CCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH-----HHHHHHHHHCSCCCSCGGGSCHH
T ss_pred             cccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH-----HHHHHHHhCCCCCCCCccccCHH
Confidence                                34788999999999999999999999653221     11111111  2233446678899


Q ss_pred             HHHHHHHhhhcCCCccccccHHHHHH
Q 005680          549 LAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +.+|+.+||+.|  |..|||+.++++
T Consensus       246 ~~~li~~~l~~d--p~~Rps~~ell~  269 (297)
T 3fxz_A          246 FRDFLNRCLEMD--VEKRGSAKELLQ  269 (297)
T ss_dssp             HHHHHHHHSCSS--TTTSCCHHHHTT
T ss_pred             HHHHHHHHccCC--hhHCcCHHHHhh
Confidence            999999999999  889999999875

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=4e-38  Score=334.12  Aligned_cols=233  Identities=20%  Similarity=0.288  Sum_probs=181.7

Q ss_pred             cCccccccccccCCceEEEEEEECCeeEEEEEcCCC-CCHHHHHHHHHHHHhcCCCCccceeccccc------ceeEEEe
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE------LKCIVFE  408 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~~g~~VAvK~l~~~-~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~------~~~LV~E  408 (683)
                      ++|.. .+++|+|+||.||+|.+.++.||||++... .....+.+|+.++.+++|||||++++++.+      ..++|||
T Consensus        24 ~~y~~-~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv~e  102 (322)
T 3soc_A           24 MPLQL-LEVKARGRFGCVWKAQLLNEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITA  102 (322)
T ss_dssp             EEEEE-EEEEECSTTCEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEE
T ss_pred             hhchh-hheecccCceEEEEEEECCCEEEEEEeecCchHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEEEe
Confidence            44443 356789999999999999999999999733 233456779999999999999999999865      2599999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCC-------CCcEEeccCCCCcccccCCCcEE
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTE-------PRPIVHGSLTPSSILLDRNLVAK  481 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~-------~~~IiHrDLKP~NILld~~~~~K  481 (683)
                      |+++|+|.+++..           ..+++..+..|+.||+.||.|||+..       ..+|+||||||+|||++.++.+|
T Consensus       103 ~~~~g~L~~~l~~-----------~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~k  171 (322)
T 3soc_A          103 FHEKGSLSDFLKA-----------NVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTAC  171 (322)
T ss_dssp             CCTTCBHHHHHHH-----------CCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEE
T ss_pred             cCCCCCHHHHHHh-----------cCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEE
Confidence            9999999999932           34999999999999999999999930       01799999999999999999999


Q ss_pred             EecCCCccc--------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHH-------
Q 005680          482 ISGLGLNIC--------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKA-------  522 (683)
Q Consensus       482 L~DFGla~~--------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~-------  522 (683)
                      |+|||+++.                                ..++.++|||||||++|+|+||++||......       
T Consensus       172 L~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~  251 (322)
T 3soc_A          172 IADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEE  251 (322)
T ss_dssp             ECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHH
T ss_pred             EccCCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhh
Confidence            999999842                                02345779999999999999999998532110       


Q ss_pred             ---hhhhHHHHHHH-hcC-CCCCCC-----hhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          523 ---MALDQTTLMQV-LDG-NAGIWP-----LDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       523 ---~~~~~~~~~~i-ld~-~~~~~p-----~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                         .......+... ... ..+..+     ...+..+.+|+.+||+.|  |..|||+.+|++.|+.|.+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~d--P~~Rps~~ell~~L~~l~~~  319 (322)
T 3soc_A          252 EIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHD--AEARLSAGCVGERITQMQRL  319 (322)
T ss_dssp             HHCSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHH
T ss_pred             hhccCCchhhhhhhhhcccCCCCccccccccchHHHHHHHHHHHccCC--hhhCcCHHHHHHHHHHHHHH
Confidence               00011112222 222 122222     245677999999999999  88999999999999999764

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=6.6e-38  Score=348.94  Aligned_cols=229  Identities=24%  Similarity=0.396  Sum_probs=193.2

Q ss_pred             HhhcCccccccccccCCceEEEEEEE-CCeeEEEEEcCC-CCCHHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEee
Q 005680          333 LATEDFSERFRLKCAGDWTNVYRGRL-NHASVAIKTLNN-GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEY  409 (683)
Q Consensus       333 ~at~~F~~~~~liG~G~fG~Vykg~~-~g~~VAvK~l~~-~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey  409 (683)
                      ...++|.. .+.+|+|+||.||+|.+ ++..||||+++. ....+.|.+|+.+|++++|||||++++++.+ ..+|||||
T Consensus       185 i~~~~~~~-~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~~~~~~lv~e~  263 (454)
T 1qcf_A          185 IPRESLKL-EKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEF  263 (454)
T ss_dssp             CCGGGEEE-EEEEECCSSEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEECC
T ss_pred             echHHeEE-EEEcccCCceEEEEEEECCccEEEEEEecCCCccHHHHHHHHHHHhhCCCCCEeeEEEEEeCCccEEEEee
Confidence            34455544 35678999999999999 578899999983 3456889999999999999999999999976 78999999


Q ss_pred             cCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCcc
Q 005680          410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNI  489 (683)
Q Consensus       410 ~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~  489 (683)
                      +++|+|.++|...        ....+++..++.|+.||+.||.|||+   .+|+||||||+||||+.++.+||+|||+++
T Consensus       264 ~~~g~L~~~l~~~--------~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DFG~a~  332 (454)
T 1qcf_A          264 MAKGSLLDFLKSD--------EGSKQPLPKLIDFSAQIAEGMAFIEQ---RNYIHRDLRAANILVSASLVCKIADFGLAR  332 (454)
T ss_dssp             CTTCBHHHHHHSH--------HHHTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCSGGGEEECTTCCEEECSTTGGG
T ss_pred             cCCCcHHHHHHhc--------cCCCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCCHHHEEECCCCcEEEeeCCCce
Confidence            9999999999532        23468999999999999999999999   679999999999999999999999999985


Q ss_pred             c--------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCC
Q 005680          490 C--------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWP  542 (683)
Q Consensus       490 ~--------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p  542 (683)
                      .                          ..++.++|||||||++|||+| |++||.....     ......+........|
T Consensus       333 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~-----~~~~~~i~~~~~~~~~  407 (454)
T 1qcf_A          333 VIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSN-----PEVIRALERGYRMPRP  407 (454)
T ss_dssp             GBCCHHHHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH-----HHHHHHHHHTCCCCCC
T ss_pred             EcCCCceeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCH-----HHHHHHHHcCCCCCCC
Confidence            3                          346789999999999999999 9999965322     1222334444455667


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      ..+++.+.+|+.+||..|  |..|||+.+|+..|+.+.
T Consensus       408 ~~~~~~l~~li~~cl~~d--p~~RPt~~~i~~~L~~~~  443 (454)
T 1qcf_A          408 ENCPEELYNIMMRCWKNR--PEERPTFEYIQSVLDDFY  443 (454)
T ss_dssp             TTSCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHTSS
T ss_pred             CCCCHHHHHHHHHHccCC--hhHCcCHHHHHHHHHHHH
Confidence            788999999999999999  889999999999998764

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=7.1e-38  Score=335.35  Aligned_cols=248  Identities=21%  Similarity=0.336  Sum_probs=198.7

Q ss_pred             ccCHHHHHHhhcCccccccccccCCceEEEEEEE-------CCeeEEEEEcCCCCCH---HHHHHHHHHHHhc-CCCCcc
Q 005680          325 EYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRL-------NHASVAIKTLNNGLSE---EDFQAKVSFLTAV-RHPHLV  393 (683)
Q Consensus       325 ~~s~~ei~~at~~F~~~~~liG~G~fG~Vykg~~-------~g~~VAvK~l~~~~~~---~~~~~Ev~iL~~l-~HpnIV  393 (683)
                      .+....+....++|... +.+|.|+||.||+|.+       +++.||||+++.....   ..+.+|+.++.++ +|||||
T Consensus        11 ~~~~~~~~~~~~~y~~~-~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv   89 (359)
T 3vhe_A           11 PYDASKWEFPRDRLKLG-KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVV   89 (359)
T ss_dssp             CCCHHHHBCCGGGEEEE-EEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred             CCCcccccccccceeec-eeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCccee
Confidence            45556666667777654 5678999999999984       3588999999854333   4689999999999 799999


Q ss_pred             ceeccccc---ceeEEEeecCCCCchhhhhhccccccc------------------------------------------
Q 005680          394 AVMGCCSE---LKCIVFEYMPNGNLRDKLFTSQRNYKN------------------------------------------  428 (683)
Q Consensus       394 ~l~g~~~~---~~~LV~Ey~~ggsL~~~L~~~~~~~~~------------------------------------------  428 (683)
                      +++++|.+   ..++||||+++|+|.+++.........                                          
T Consensus        90 ~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (359)
T 3vhe_A           90 NLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVE  169 (359)
T ss_dssp             CEEEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC----------------------------------------
T ss_pred             eeeeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccccc
Confidence            99999865   489999999999999999654211000                                          


Q ss_pred             --------------ccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          429 --------------CSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       429 --------------~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                                    ......+++..++.|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..    
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~  246 (359)
T 3vhe_A          170 EKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKD  246 (359)
T ss_dssp             --------------CTTTTCBCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSC
T ss_pred             ccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChhhEEEcCCCcEEEEeccceeeeccc
Confidence                          0002239999999999999999999999   6799999999999999999999999999852    


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhH
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLA  546 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~  546 (683)
                                             ..++.++|||||||++|+|+| |.+||.....    .......+........|..++
T Consensus       247 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~----~~~~~~~~~~~~~~~~~~~~~  322 (359)
T 3vhe_A          247 PDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI----DEEFCRRLKEGTRMRAPDYTT  322 (359)
T ss_dssp             TTCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC----SHHHHHHHHHTCCCCCCTTCC
T ss_pred             ccchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccch----hHHHHHHHHcCCCCCCCCCCC
Confidence                                   346789999999999999998 9999964221    122223333444556677788


Q ss_pred             HHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          547 EELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       547 ~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      +.+.+|+.+||+.|  |..|||+.+|++.|+.+...
T Consensus       323 ~~l~~li~~~l~~d--P~~Rps~~ell~~L~~~~~~  356 (359)
T 3vhe_A          323 PEMYQTMLDCWHGE--PSQRPTFSELVEHLGNLLQA  356 (359)
T ss_dssp             HHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCC--hhhCCCHHHHHHHHHHHHHH
Confidence            99999999999999  88999999999999998753

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=5.5e-38  Score=341.02  Aligned_cols=223  Identities=27%  Similarity=0.442  Sum_probs=182.4

Q ss_pred             ccccccCCceEEEEEEEC-----CeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          342 FRLKCAGDWTNVYRGRLN-----HASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~-----g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      .+++|+|+||.||+|.+.     +..||||+++....   ...|.+|+.++.+++|||||+++|+|.+  ..+|||||++
T Consensus        50 ~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  129 (373)
T 2qol_A           50 DKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYME  129 (373)
T ss_dssp             CEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred             eeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEEEEeCCC
Confidence            357789999999999863     57899999974432   3578999999999999999999999976  7899999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      +|+|.+++..         ....+++..++.|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++. 
T Consensus       130 ~~sL~~~l~~---------~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~  197 (373)
T 2qol_A          130 NGSLDSFLRK---------HDAQFTVIQLVGMLRGIASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLGRVL  197 (373)
T ss_dssp             TCBHHHHHHT---------TTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC------
T ss_pred             CCcHHHHHHh---------CCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCcceEEEcCCCCEEECcCcccccc
Confidence            9999999952         33569999999999999999999999   6799999999999999999999999998753 


Q ss_pred             ---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCC
Q 005680          491 ---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWP  542 (683)
Q Consensus       491 ---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p  542 (683)
                                                 ..++.++|||||||++|||++ |++||.....     ......+........+
T Consensus       198 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~-----~~~~~~i~~~~~~~~~  272 (373)
T 2qol_A          198 EDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSN-----QDVIKAVDEGYRLPPP  272 (373)
T ss_dssp             ----------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCH-----HHHHHHHHTTEECCCC
T ss_pred             ccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCH-----HHHHHHHHcCCCCCCC
Confidence                                       246789999999999999998 9999864322     1222233333344556


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      ..++..+.+|+.+||+.|  |..||++.+|++.|+.+.+..
T Consensus       273 ~~~~~~l~~li~~cl~~d--p~~RPs~~~i~~~L~~~~~~~  311 (373)
T 2qol_A          273 MDCPAALYQLMLDCWQKD--RNNRPKFEQIVSILDKLIRNP  311 (373)
T ss_dssp             TTCBHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHCG
T ss_pred             ccccHHHHHHHHHHhCcC--hhhCcCHHHHHHHHHHHHhCc
Confidence            678899999999999999  889999999999999997654

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=1.4e-37  Score=324.24  Aligned_cols=220  Identities=22%  Similarity=0.305  Sum_probs=176.7

Q ss_pred             ccccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHh--cCCCCccceeccccc------ceeEEEeecCCC
Q 005680          342 FRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTA--VRHPHLVAVMGCCSE------LKCIVFEYMPNG  413 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~--l~HpnIV~l~g~~~~------~~~LV~Ey~~gg  413 (683)
                      .+.+|+|+||.||+|.++|..||||++... ....+..|.+++..  ++||||+++++++.+      ..++||||+++|
T Consensus        13 ~~~lg~G~~g~V~~~~~~~~~vavK~~~~~-~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~lv~e~~~~g   91 (301)
T 3q4u_A           13 LECVGKGRYGEVWRGSWQGENVAVKIFSSR-DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMG   91 (301)
T ss_dssp             EEEEEECSSEEEEEEEETTEEEEEEEECGG-GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEEEECCCTTC
T ss_pred             EEeeccCCCcEEEEEEECCEEEEEEEeccc-cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEEehhhccCC
Confidence            456789999999999999999999999643 34566777777776  799999999998643      478999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhc--------cCCCCcEEeccCCCCcccccCCCcEEEecC
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLH--------STEPRPIVHGSLTPSSILLDRNLVAKISGL  485 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH--------~~~~~~IiHrDLKP~NILld~~~~~KL~DF  485 (683)
                      +|.+++.           ...+++..++.|+.||+.||.|||        +   .+|+||||||+|||++.++.+||+||
T Consensus        92 ~L~~~l~-----------~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~---~~ivH~Dlkp~Nill~~~~~~kl~Df  157 (301)
T 3q4u_A           92 SLYDYLQ-----------LTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGK---PAIAHRDLKSKNILVKKNGQCCIADL  157 (301)
T ss_dssp             BHHHHHT-----------TCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCB---CEEECSCCCGGGEEECTTSCEEECCC
T ss_pred             CHHHHHh-----------hcccCHHHHHHHHHHHHHHHHHHHHhhhhccCC---CCeecCCCChHhEEEcCCCCEEEeeC
Confidence            9999992           346999999999999999999999        6   78999999999999999999999999


Q ss_pred             CCccc-----------------------------c------CCCcccccccHHHHHHHHhhC----------CCCchhhH
Q 005680          486 GLNIC-----------------------------D------QLNVRSDIRAFGTLLLHLLTG----------RNWAGLVE  520 (683)
Q Consensus       486 Gla~~-----------------------------~------~~t~ksDVwSlGviL~eLltG----------~~Pf~~~~  520 (683)
                      |+++.                             .      .++.++|||||||++|+|+||          .+||....
T Consensus       158 g~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~  237 (301)
T 3q4u_A          158 GLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVV  237 (301)
T ss_dssp             TTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTS
T ss_pred             CCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccC
Confidence            98742                             0      234689999999999999999          77775321


Q ss_pred             HHhhhhHHHHHHH--hcCCCCCCC-----hhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          521 KAMALDQTTLMQV--LDGNAGIWP-----LDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       521 ~~~~~~~~~~~~i--ld~~~~~~p-----~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                      ... .....+...  .....+..|     ..++..+.+|+.+||+.|  |..|||+.+|++.|+.|
T Consensus       238 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~d--P~~Rps~~~i~~~L~~i  300 (301)
T 3q4u_A          238 PND-PSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQN--PSARLTALRIKKTLTKI  300 (301)
T ss_dssp             CSS-CCHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHCCSS--GGGSCCHHHHHHHHHHH
T ss_pred             CCC-cchhhhhHHHhccCCCCCCChhhccCccHHHHHHHHHHHhhcC--hhhCCCHHHHHHHHhcc
Confidence            110 111112222  222333333     247789999999999999  88999999999999876

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=6.3e-38  Score=329.66  Aligned_cols=226  Identities=18%  Similarity=0.284  Sum_probs=185.3

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC--CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCc
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG--LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNL  415 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~--~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL  415 (683)
                      .+++|+|+||.||+|.+  +|..||+|++...  .....+.+|+.++.+++|||||+++++|.+  ..++||||+++|+|
T Consensus        15 ~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L   94 (310)
T 3s95_A           15 GEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTL   94 (310)
T ss_dssp             EEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCTTCBH
T ss_pred             cceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEecCCCcH
Confidence            35678999999999998  5899999988632  234678999999999999999999999965  78999999999999


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-----
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-----  490 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-----  490 (683)
                      .+++..         ....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..     
T Consensus        95 ~~~l~~---------~~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  162 (310)
T 3s95_A           95 RGIIKS---------MDSQYPWSQRVSFAKDIASGMAYLHS---MNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEK  162 (310)
T ss_dssp             HHHHHH---------CCTTSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEECTTSCEEECCCTTCEECC---
T ss_pred             HHHHHh---------ccCCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCCcCeEEECCCCCEEEeecccceeccccc
Confidence            999953         24569999999999999999999999   6799999999999999999999999999842     


Q ss_pred             ----------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC
Q 005680          491 ----------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG  536 (683)
Q Consensus       491 ----------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~  536 (683)
                                                        ..++.++|||||||++|+|++|.+||....................
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~  242 (310)
T 3s95_A          163 TQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDR  242 (310)
T ss_dssp             -----------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHH
T ss_pred             ccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhccccc
Confidence                                              2367899999999999999999998864221100000111111111


Q ss_pred             CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhcc
Q 005680          537 NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKAD  584 (683)
Q Consensus       537 ~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~~  584 (683)
                         ..|..+++.+.+|+.+||+.|  |.+|||+.++++.|+.++....
T Consensus       243 ---~~~~~~~~~l~~li~~~l~~d--P~~Rps~~~l~~~L~~l~~~~~  285 (310)
T 3s95_A          243 ---YCPPNCPPSFFPITVRCCDLD--PEKRPSFVKLEHWLETLRMHLA  285 (310)
T ss_dssp             ---TCCTTCCTTHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHHHH
T ss_pred             ---cCCCCCCHHHHHHHHHHccCC--hhhCcCHHHHHHHHHHHHHhcc
Confidence               234566778999999999999  8899999999999999987654

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=6.1e-38  Score=321.17  Aligned_cols=224  Identities=19%  Similarity=0.361  Sum_probs=184.9

Q ss_pred             ccccccCCceEEEEEEECCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc----ceeEEEeecCCC
Q 005680          342 FRLKCAGDWTNVYRGRLNHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE----LKCIVFEYMPNG  413 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----~~~LV~Ey~~gg  413 (683)
                      .+.+|+|+||.||+|.++|..||||++....    ....+.+|+.++++++||||++++++|.+    ..++||||+++|
T Consensus        15 ~~~lg~G~~g~V~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~   94 (271)
T 3kmu_A           15 LTKLNENHSGELWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYG   94 (271)
T ss_dssp             EEEEEEETTEEEEEEEETTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEEECCTTC
T ss_pred             HHHhcCCCcceEEEEEECCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeeecccCCC
Confidence            3567899999999999999999999997332    23568999999999999999999999854    569999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++...        ....+++..++.|+.||+.||.|||+.+ .+|+||||||+|||++.++.++|+|||++..   
T Consensus        95 ~L~~~l~~~--------~~~~~~~~~~~~i~~qi~~~l~~lH~~~-~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~~  165 (271)
T 3kmu_A           95 SLYNVLHEG--------TNFVVDQSQAVKFALDMARGMAFLHTLE-PLIPRHALNSRSVMIDEDMTARISMADVKFSFQS  165 (271)
T ss_dssp             BHHHHHHSC--------SSCCCCHHHHHHHHHHHHHHHHHHTTSS-SCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTSC
T ss_pred             cHHHHHhhc--------ccCCCCHHHHHHHHHHHHHHHHHHhcCC-CceecCCCccceEEEcCCcceeEEeccceeeecc
Confidence            999999532        2336999999999999999999999943 3399999999999999999999998887632   


Q ss_pred             --------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHH
Q 005680          491 --------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELA  550 (683)
Q Consensus       491 --------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~  550 (683)
                                          ..++.++|||||||++|+|+||+.||......    ...............|..+++.+.
T Consensus       166 ~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  241 (271)
T 3kmu_A          166 PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNM----EIGMKVALEGLRPTIPPGISPHVS  241 (271)
T ss_dssp             TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHH----HHHHHHHHSCCCCCCCTTCCHHHH
T ss_pred             cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChH----HHHHHHHhcCCCCCCCCCCCHHHH
Confidence                                12233799999999999999999999753221    111122233445567778899999


Q ss_pred             HHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          551 GIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       551 ~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      +++.+||+.|  |..|||+.++++.|+.+.
T Consensus       242 ~li~~~l~~~--p~~Rps~~~il~~L~~l~  269 (271)
T 3kmu_A          242 KLMKICMNED--PAKRPKFDMIVPILEKMQ  269 (271)
T ss_dssp             HHHHHHTCSS--GGGSCCHHHHHHHHHHHC
T ss_pred             HHHHHHcCCC--hhhCcCHHHHHHHHHHhh
Confidence            9999999999  889999999999999875

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=4.7e-38  Score=335.89  Aligned_cols=218  Identities=18%  Similarity=0.287  Sum_probs=181.2

Q ss_pred             hcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEE
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV  406 (683)
                      .++|.. .+.+|+|+||.||+|.+  +|+.||||++....    ....+.+|+.+|+.++||||+++++++.+  ..|+|
T Consensus        14 ~~~y~~-~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv   92 (328)
T 3fe3_A           14 IGNYRL-LKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLI   92 (328)
T ss_dssp             ETTEEE-EEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cCCEEE-EEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEE
Confidence            345544 46778999999999998  78999999986321    23568899999999999999999999965  78999


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      |||++||+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||
T Consensus        93 ~e~~~~~~L~~~l~----------~~~~l~~~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~NIll~~~~~~kl~DFG  159 (328)
T 3fe3_A           93 MEYASGGEVFDYLV----------AHGRMKEKEARSKFRQIVSAVQYCHQ---KRIVHRDLKAENLLLDADMNIKIADFG  159 (328)
T ss_dssp             ECCCTTCBHHHHHH----------HHCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECSTT
T ss_pred             EECCCCCcHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCEeccCCCHHHEEEcCCCCEEEeecc
Confidence            99999999999994          44569999999999999999999999   679999999999999999999999999


Q ss_pred             Cccc------------------------cC-CCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCC
Q 005680          487 LNIC------------------------DQ-LNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIW  541 (683)
Q Consensus       487 la~~------------------------~~-~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~  541 (683)
                      ++..                        .. .+.++|||||||++|+|+||++||.....     ......+.. .....
T Consensus       160 ~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-----~~~~~~i~~-~~~~~  233 (328)
T 3fe3_A          160 FSNEFTVGGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNL-----KELRERVLR-GKYRI  233 (328)
T ss_dssp             CCGGGSSSCGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHH-CCCCC
T ss_pred             CceecCCCCccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCH-----HHHHHHHHh-CCCCC
Confidence            9853                        12 25789999999999999999999975322     111222222 33456


Q ss_pred             ChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          542 PLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       542 p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      |..+++.+.+|+.+||..|  |.+|||+.++++
T Consensus       234 p~~~s~~~~~li~~~L~~d--P~~R~t~~eil~  264 (328)
T 3fe3_A          234 PFYMSTDCENLLKRFLVLN--PIKRGTLEQIMK  264 (328)
T ss_dssp             CTTSCHHHHHHHHHHCCSS--TTTSCCHHHHTT
T ss_pred             CCCCCHHHHHHHHHHCCCC--hhHCcCHHHHhc
Confidence            6678899999999999999  889999998875

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=1.1e-37  Score=323.29  Aligned_cols=222  Identities=25%  Similarity=0.359  Sum_probs=183.3

Q ss_pred             ccccccCCceEEEEEEEC-----CeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRLN-----HASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~-----g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~g  412 (683)
                      .+.+|+|+||.||+|.+.     +..||||++.....   ...+.+|+.++++++||||+++++++.+ ..++||||+++
T Consensus        20 ~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~lv~e~~~~   99 (281)
T 1mp8_A           20 GRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTL   99 (281)
T ss_dssp             EEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSCEEEEECCTT
T ss_pred             EeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEccCccEEEEecCCC
Confidence            467789999999999972     45799999874332   3568899999999999999999999866 78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++..         ....+++..++.++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..  
T Consensus       100 ~~L~~~l~~---------~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  167 (281)
T 1mp8_A          100 GELRSFLQV---------RKYSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYME  167 (281)
T ss_dssp             EEHHHHHHH---------TTTTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECC--------
T ss_pred             CCHHHHHHh---------cCCCCCHHHHHHHHHHHHHHHHHHHh---CCeecccccHHHEEECCCCCEEECccccccccC
Confidence            999999942         23469999999999999999999999   6799999999999999999999999998743  


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhh
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDL  545 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~  545 (683)
                                              ..++.++|||||||++|+|++ |.+||.....     ......+........+..+
T Consensus       168 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~-----~~~~~~i~~~~~~~~~~~~  242 (281)
T 1mp8_A          168 DSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN-----NDVIGRIENGERLPMPPNC  242 (281)
T ss_dssp             -----------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCG-----GGHHHHHHTTCCCCCCTTC
T ss_pred             cccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCH-----HHHHHHHHcCCCCCCCCCC
Confidence                                    246778999999999999997 9999965322     2223344444555667788


Q ss_pred             HHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          546 AEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       546 ~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      ++.+.+++.+||+.|  |..|||+.++++.|+.+...
T Consensus       243 ~~~l~~li~~~l~~~--p~~Rps~~~l~~~l~~~~~~  277 (281)
T 1mp8_A          243 PPTLYSLMTKCWAYD--PSRRPRFTELKAQLSTILEE  277 (281)
T ss_dssp             CHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHccCC--hhhCcCHHHHHHHHHHHHHH
Confidence            999999999999999  88999999999999998754

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=1.3e-37  Score=321.86  Aligned_cols=228  Identities=24%  Similarity=0.373  Sum_probs=190.2

Q ss_pred             cCccccccccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccccc---ceeEEEeecCC
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE---LKCIVFEYMPN  412 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~---~~~LV~Ey~~g  412 (683)
                      ++|.. .+.+|.|+||.||+|.++|..||||++......+.+.+|+.++.+++||||+++++++.+   ..++||||+++
T Consensus        21 ~~y~~-~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~   99 (278)
T 1byg_A           21 KELKL-LQTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAK   99 (278)
T ss_dssp             GGEEE-EEEEEECSSCEEEEEEETTEEEEEEECCCCC--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTT
T ss_pred             hhceE-EeEEecCCCceEEEEEEcCCEEEEEEecchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEecCCC
Confidence            34433 356789999999999999999999999876677889999999999999999999998643   68999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++...        ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..  
T Consensus       100 ~~L~~~l~~~--------~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~  168 (278)
T 1byg_A          100 GSLVDYLRSR--------GRSVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEAS  168 (278)
T ss_dssp             EEHHHHHHHH--------HHHHCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTSCEEECCCCC-----
T ss_pred             CCHHHHHHhc--------ccccCCHHHHHHHHHHHHHHHHHHHh---CCccccCCCcceEEEeCCCcEEEeecccccccc
Confidence            9999999533        22348999999999999999999999   6799999999999999999999999998753  


Q ss_pred             --------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHH
Q 005680          491 --------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEEL  549 (683)
Q Consensus       491 --------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l  549 (683)
                                          ..++.++||||||+++|+|+| |++||.....     ......+........+..+++.+
T Consensus       169 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l  243 (278)
T 1byg_A          169 STQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL-----KDVVPRVEKGYKMDAPDGCPPAV  243 (278)
T ss_dssp             -------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCG-----GGHHHHHTTTCCCCCCTTCCHHH
T ss_pred             ccccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCH-----HHHHHHHhcCCCCCCcccCCHHH
Confidence                                346789999999999999998 9999975322     12223333444555667788999


Q ss_pred             HHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          550 AGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       550 ~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      .+++.+||+.|  |..|||+.++++.|+.++..
T Consensus       244 ~~li~~~l~~~--p~~Rps~~~l~~~L~~i~~~  274 (278)
T 1byg_A          244 YEVMKNCWHLD--AAMRPSFLQLREQLEHIKTH  274 (278)
T ss_dssp             HHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCC--hhhCCCHHHHHHHHHHHHhh
Confidence            99999999999  88999999999999999764

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=6.1e-38  Score=332.88  Aligned_cols=223  Identities=19%  Similarity=0.299  Sum_probs=185.1

Q ss_pred             cccccccCCceEEEEEEE--CCee----EEEEEcCCC---CCHHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeec
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHAS----VAIKTLNNG---LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYM  410 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~----VAvK~l~~~---~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~  410 (683)
                      ..+++|+|+||.||+|.+  +|..    ||+|.+...   .....+.+|+.++.+++|||||+++++|.+ ..++||||+
T Consensus        17 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~   96 (325)
T 3kex_A           17 KLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPGSSLQLVTQYL   96 (325)
T ss_dssp             EEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEECBSSEEEEEECC
T ss_pred             eeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCccEEEEEeC
Confidence            346788999999999998  4444    888887622   223567889999999999999999999976 789999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~  490 (683)
                      ++|+|.+++..         ....+++..++.|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++.
T Consensus        97 ~~~~L~~~l~~---------~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~  164 (325)
T 3kex_A           97 PLGSLLDHVRQ---------HRGALGPQLLLNWGVQIAKGMYYLEE---HGMVHRNLAARNVLLKSPSQVQVADFGVADL  164 (325)
T ss_dssp             TTCBSHHHHHS---------SGGGSCTTHHHHHHHHHHHHHHHHHH---TTCCCSCCSSTTEEESSSSCEEECSCSGGGG
T ss_pred             CCCCHHHHHHH---------ccccCCHHHHHHHHHHHHHHHHHHHh---CCCCCCccchheEEECCCCeEEECCCCcccc
Confidence            99999999952         23578999999999999999999999   6799999999999999999999999999853


Q ss_pred             ---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCC
Q 005680          491 ---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWP  542 (683)
Q Consensus       491 ---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p  542 (683)
                                                 ..++.++|||||||++|+|+| |++||.....     ......+........|
T Consensus       165 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~  239 (325)
T 3kex_A          165 LPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRL-----AEVPDLLEKGERLAQP  239 (325)
T ss_dssp             SCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCT-----THHHHHHHTTCBCCCC
T ss_pred             cCcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCH-----HHHHHHHHcCCCCCCC
Confidence                                       346789999999999999999 9999975321     1122223333445556


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      ..++..+.+|+.+||..|  |..|||+.++++.|+.+.+.
T Consensus       240 ~~~~~~~~~li~~~l~~d--p~~Rps~~el~~~l~~~~~~  277 (325)
T 3kex_A          240 QICTIDVYMVMVKCWMID--ENIRPTFKELANEFTRMARD  277 (325)
T ss_dssp             TTBCTTTTHHHHHHTCSC--TTTSCCHHHHHHHHHHHTTS
T ss_pred             CcCcHHHHHHHHHHcCCC--hhhCcCHHHHHHHHHHHHhc
Confidence            677889999999999999  88999999999999988643

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=1.5e-37  Score=322.44  Aligned_cols=227  Identities=25%  Similarity=0.445  Sum_probs=185.5

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCC---------HHHHHHHHHHHHhcCCCCccceeccccccee
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLS---------EEDFQAKVSFLTAVRHPHLVAVMGCCSELKC  404 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~---------~~~~~~Ev~iL~~l~HpnIV~l~g~~~~~~~  404 (683)
                      ++|. ..+.+|.|+||.||+|.+  ++..||||++.....         ...+.+|+.++.+++||||+++++++.+..+
T Consensus        19 ~~y~-~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~   97 (287)
T 4f0f_A           19 NEIE-YEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPPR   97 (287)
T ss_dssp             TTEE-EEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTTE
T ss_pred             ccce-ehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCCe
Confidence            3443 346778999999999998  689999999862211         1678999999999999999999999998889


Q ss_pred             EEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc-----
Q 005680          405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV-----  479 (683)
Q Consensus       405 LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~-----  479 (683)
                      +||||+++|+|.+++.         .....+++..++.++.||+.||.|||+.+ .+|+||||||+|||++.++.     
T Consensus        98 lv~e~~~~~~L~~~l~---------~~~~~~~~~~~~~~~~~l~~~l~~lH~~~-~~ivH~dikp~Nil~~~~~~~~~~~  167 (287)
T 4f0f_A           98 MVMEFVPCGDLYHRLL---------DKAHPIKWSVKLRLMLDIALGIEYMQNQN-PPIVHRDLRSPNIFLQSLDENAPVC  167 (287)
T ss_dssp             EEEECCTTCBHHHHHH---------CTTSCCCHHHHHHHHHHHHHHHHHHHTSS-SCCBCSCCSGGGEEESCCCTTCSCC
T ss_pred             EEEEecCCCCHHHHHh---------cccCCccHHHHHHHHHHHHHHHHHHHhCC-CCeecCCCCcceEEEeccCCCCcee
Confidence            9999999999999885         23457999999999999999999999943 23999999999999988776     


Q ss_pred             EEEecCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHh-
Q 005680          480 AKISGLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVL-  534 (683)
Q Consensus       480 ~KL~DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~il-  534 (683)
                      +||+|||+++.                        ..++.++|||||||++|+|++|+.||......   .......+. 
T Consensus       168 ~kl~Dfg~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~---~~~~~~~~~~  244 (287)
T 4f0f_A          168 AKVADFGLSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYG---KIKFINMIRE  244 (287)
T ss_dssp             EEECCCTTCBCCSSCEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCC---HHHHHHHHHH
T ss_pred             EEeCCCCccccccccccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCcccccc---HHHHHHHHhc
Confidence            99999998853                        12567899999999999999999999643211   111111222 


Q ss_pred             cCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHH
Q 005680          535 DGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDE  578 (683)
Q Consensus       535 d~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~  578 (683)
                      .......+..+++.+.+|+.+||+.|  |..|||+.++++.|+.
T Consensus       245 ~~~~~~~~~~~~~~l~~li~~~l~~d--p~~Rps~~~ll~~L~~  286 (287)
T 4f0f_A          245 EGLRPTIPEDCPPRLRNVIELCWSGD--PKKRPHFSYIVKELSE  286 (287)
T ss_dssp             SCCCCCCCTTSCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHT
T ss_pred             cCCCCCCCcccCHHHHHHHHHHhcCC--hhhCcCHHHHHHHHHh
Confidence            23445667788999999999999999  8899999999999875

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=4.2e-37  Score=317.86  Aligned_cols=229  Identities=24%  Similarity=0.388  Sum_probs=191.4

Q ss_pred             cCccccccccccCCceEEEEEEE-CCeeEEEEEcCC-CCCHHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecCC
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL-NHASVAIKTLNN-GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMPN  412 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~-~g~~VAvK~l~~-~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~g  412 (683)
                      ++|.. .+.+|.|+||.||+|.+ ++..||||++.. ....+.+.+|+.++++++||||+++++++.+ ..++||||+++
T Consensus        13 ~~y~~-~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~   91 (279)
T 1qpc_A           13 ETLKL-VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN   91 (279)
T ss_dssp             GGEEE-EEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTT
T ss_pred             Hhhhh-eeeecCCCCeEEEEEEEcCCcEEEEEEecCCcccHHHHHHHHHHHHhCCCcCcceEEEEEcCCCcEEEEecCCC
Confidence            34433 35678999999999998 467899999973 3456789999999999999999999999876 78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++...        ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..  
T Consensus        92 ~~L~~~l~~~--------~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~  160 (279)
T 1qpc_A           92 GSLVDFLKTP--------SGIKLTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLIE  160 (279)
T ss_dssp             CBHHHHTTSH--------HHHTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCEECS
T ss_pred             CCHHHHHhcC--------CCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHhhEEEcCCCCEEECCCccccccc
Confidence            9999999422        22369999999999999999999999   6799999999999999999999999999753  


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhh
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDL  545 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~  545 (683)
                                              ..++.++||||||+++|+|++ |++||.....     ......+........+..+
T Consensus       161 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~  235 (279)
T 1qpc_A          161 DNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTN-----PEVIQNLERGYRMVRPDNC  235 (279)
T ss_dssp             SSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCH-----HHHHHHHHTTCCCCCCTTC
T ss_pred             CcccccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCH-----HHHHHHHhcccCCCCcccc
Confidence                                    235678999999999999999 9999865322     1223333444445556678


Q ss_pred             HHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          546 AEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       546 ~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      +..+.+|+.+||..|  |..|||+.++++.|+.+....
T Consensus       236 ~~~l~~li~~~l~~~--p~~Rps~~~l~~~l~~~~~~~  271 (279)
T 1qpc_A          236 PEELYQLMRLCWKER--PEDRPTFDYLRSVLEDFFTAT  271 (279)
T ss_dssp             CHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHhccC--hhhCCCHHHHHHHHHHHHHhc
Confidence            899999999999999  889999999999999987653

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=4e-37  Score=315.26  Aligned_cols=221  Identities=24%  Similarity=0.407  Sum_probs=188.9

Q ss_pred             ccccccCCceEEEEEEE-CCeeEEEEEcCC-CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCchh
Q 005680          342 FRLKCAGDWTNVYRGRL-NHASVAIKTLNN-GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRD  417 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~-~g~~VAvK~l~~-~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~  417 (683)
                      .+.+|+|+||.||+|.+ ++..||||++.. ....+.+.+|+.++.+++||||+++++++.+  ..++||||+++|+|.+
T Consensus        13 ~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~   92 (267)
T 3t9t_A           13 VQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSD   92 (267)
T ss_dssp             EEEEEEETTEEEEEEEETTTEEEEEEEECTTTBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCTTCBHHH
T ss_pred             eeEecCCCceeEEEEEecCCCeEEEEEccccCCCHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCCCCcHHH
Confidence            35678999999999998 678999999983 3456789999999999999999999999966  7899999999999999


Q ss_pred             hhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-------
Q 005680          418 KLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-------  490 (683)
Q Consensus       418 ~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-------  490 (683)
                      ++..         ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..       
T Consensus        93 ~~~~---------~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~  160 (267)
T 3t9t_A           93 YLRT---------QRGLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYT  160 (267)
T ss_dssp             HHHH---------TTTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHH
T ss_pred             HHhh---------CcccCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCchheEEECCCCCEEEccccccccccccccc
Confidence            9952         23568999999999999999999999   6799999999999999999999999998753       


Q ss_pred             -------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHH
Q 005680          491 -------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELA  550 (683)
Q Consensus       491 -------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~  550 (683)
                                         ..++.++||||||+++|+|++ |++||.....     ......+........|..++..+.
T Consensus       161 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~l~  235 (267)
T 3t9t_A          161 SSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN-----SEVVEDISTGFRLYKPRLASTHVY  235 (267)
T ss_dssp             STTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH-----HHHHHHHHTTCCCCCCTTSCHHHH
T ss_pred             ccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCH-----HHHHHHHhcCCcCCCCccCcHHHH
Confidence                               246778999999999999999 8999865322     222333444444455667789999


Q ss_pred             HHHHHhhhcCCCccccccHHHHHHHHHHHHH
Q 005680          551 GIALKCLSADQDANRDLRIAGVMKELDEVRK  581 (683)
Q Consensus       551 ~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~  581 (683)
                      +|+.+||..|  |..|||+.++++.|+.+.+
T Consensus       236 ~li~~~l~~~--p~~Rps~~~ll~~L~~l~~  264 (267)
T 3t9t_A          236 QIMNHCWRER--PEDRPAFSRLLRQLAEIAE  264 (267)
T ss_dssp             HHHHHHTCSS--GGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHccCC--hhhCcCHHHHHHHHHHHHh
Confidence            9999999999  8899999999999999875

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=2.6e-37  Score=317.66  Aligned_cols=221  Identities=23%  Similarity=0.380  Sum_probs=180.0

Q ss_pred             ccccccCCceEEEEEEECCeeEEEEEcCCC------CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          342 FRLKCAGDWTNVYRGRLNHASVAIKTLNNG------LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~g~~VAvK~l~~~------~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      .+.+|+|+||.||+|.+.|..||||++...      ...+.+.+|+.+++.++||||++++++|.+  ..++||||+++|
T Consensus        12 ~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   91 (271)
T 3dtc_A           12 EEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGG   91 (271)
T ss_dssp             EEEEEEETTEEEEEEEETTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEEECCTTE
T ss_pred             eeeeccCCCeEEEEEEEcCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEEEcCCCC
Confidence            357789999999999999999999998722      224678999999999999999999999976  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC--------CCcEEEecC
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR--------NLVAKISGL  485 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~--------~~~~KL~DF  485 (683)
                      +|.+++.           ...+++..++.++.||+.||.|||+.+..+|+||||||+|||++.        ++.+||+||
T Consensus        92 ~L~~~~~-----------~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Df  160 (271)
T 3dtc_A           92 PLNRVLS-----------GKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDF  160 (271)
T ss_dssp             EHHHHHT-----------SSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCC
T ss_pred             CHHHHhh-----------cCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccC
Confidence            9999982           346899999999999999999999954333999999999999986        788999999


Q ss_pred             CCccc-----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCC
Q 005680          486 GLNIC-----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWP  542 (683)
Q Consensus       486 Gla~~-----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p  542 (683)
                      |++..                       ..++.++||||||+++|+|++|++||......    ...............+
T Consensus       161 g~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~----~~~~~~~~~~~~~~~~  236 (271)
T 3dtc_A          161 GLAREWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGL----AVAYGVAMNKLALPIP  236 (271)
T ss_dssp             CC-------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHH----HHHHHHHTSCCCCCCC
T ss_pred             CcccccccccccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH----HHHHhhhcCCCCCCCC
Confidence            99853                       34788999999999999999999999753221    1111122223445566


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                      ..+++.+.+++.+||+.|  |.+|||+.++++.|+.|
T Consensus       237 ~~~~~~~~~li~~~l~~~--p~~Rps~~e~l~~L~~l  271 (271)
T 3dtc_A          237 STCPEPFAKLMEDCWNPD--PHSRPSFTNILDQLTTI  271 (271)
T ss_dssp             TTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHC-
T ss_pred             cccCHHHHHHHHHHhcCC--cccCcCHHHHHHHHhcC
Confidence            778899999999999999  88999999999999754

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=1.1e-37  Score=331.56  Aligned_cols=239  Identities=24%  Similarity=0.418  Sum_probs=192.9

Q ss_pred             hhcCccccccccccCCceEEEEEEECC-------eeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--
Q 005680          334 ATEDFSERFRLKCAGDWTNVYRGRLNH-------ASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--  401 (683)
Q Consensus       334 at~~F~~~~~liG~G~fG~Vykg~~~g-------~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--  401 (683)
                      ..++|... +.+|.|+||.||+|.+.+       ..||||+++....   ...+.+|+.++.+++||||++++++|.+  
T Consensus        45 ~~~~~~~~-~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~  123 (343)
T 1luf_A           45 PRNNIEYV-RDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGK  123 (343)
T ss_dssp             CGGGCEEE-EEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS
T ss_pred             cHHHCeee-eeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCC
Confidence            34555443 567899999999999843       7899999984433   3568999999999999999999999966  


Q ss_pred             ceeEEEeecCCCCchhhhhhccccc--------------ccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccC
Q 005680          402 LKCIVFEYMPNGNLRDKLFTSQRNY--------------KNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSL  467 (683)
Q Consensus       402 ~~~LV~Ey~~ggsL~~~L~~~~~~~--------------~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDL  467 (683)
                      ..++||||+++|+|.+++.......              ........+++..++.|+.||+.||.|||+   .+|+||||
T Consensus       124 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dl  200 (343)
T 1luf_A          124 PMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE---RKFVHRDL  200 (343)
T ss_dssp             SCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCC
T ss_pred             ceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCC
Confidence            7899999999999999996532100              000112679999999999999999999999   67999999


Q ss_pred             CCCcccccCCCcEEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhh
Q 005680          468 TPSSILLDRNLVAKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLV  519 (683)
Q Consensus       468 KP~NILld~~~~~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~  519 (683)
                      ||+|||++.++.+||+|||++..                           ..++.++|||||||++|+|+| |..||...
T Consensus       201 kp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~  280 (343)
T 1luf_A          201 ATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGM  280 (343)
T ss_dssp             SGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS
T ss_pred             CcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCC
Confidence            99999999999999999998742                           346789999999999999999 99998653


Q ss_pred             HHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          520 EKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       520 ~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      ..     ......+........|..++..+.+|+.+||+.|  |..|||+.++++.|+.+....
T Consensus       281 ~~-----~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~--p~~Rps~~~~~~~L~~~~~~~  337 (343)
T 1luf_A          281 AH-----EEVIYYVRDGNILACPENCPLELYNLMRLCWSKL--PADRPSFCSIHRILQRMCERA  337 (343)
T ss_dssp             CH-----HHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHTTC--
T ss_pred             Ch-----HHHHHHHhCCCcCCCCCCCCHHHHHHHHHHcccC--cccCCCHHHHHHHHHHHHhhh
Confidence            22     2233344555555667788899999999999999  889999999999999886544

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=4.7e-37  Score=320.78  Aligned_cols=229  Identities=21%  Similarity=0.363  Sum_probs=187.9

Q ss_pred             ccccccccccCCceEEEEEEE------CCeeEEEEEcCCC---CCHHHHHHHHHHHHhcCCCCccceeccccc----cee
Q 005680          338 FSERFRLKCAGDWTNVYRGRL------NHASVAIKTLNNG---LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE----LKC  404 (683)
Q Consensus       338 F~~~~~liG~G~fG~Vykg~~------~g~~VAvK~l~~~---~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----~~~  404 (683)
                      +....+.+|+|+||.||+|.+      ++..||||++...   .....+.+|+.++..++||||+++++++.+    ..+
T Consensus        22 ~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~  101 (302)
T 4e5w_A           22 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIK  101 (302)
T ss_dssp             GEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCEE
T ss_pred             hhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceEE
Confidence            345557789999999999984      5799999999732   344789999999999999999999999854    578


Q ss_pred             EEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEec
Q 005680          405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISG  484 (683)
Q Consensus       405 LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~D  484 (683)
                      +||||+++|+|.+++..         ....+++..++.++.||+.||.|||+   .+|+||||||+|||++.++.+||+|
T Consensus       102 lv~e~~~~~~L~~~l~~---------~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~D  169 (302)
T 4e5w_A          102 LIMEFLPSGSLKEYLPK---------NKNKINLKQQLKYAVQICKGMDYLGS---RQYVHRDLAARNVLVESEHQVKIGD  169 (302)
T ss_dssp             EEEECCTTCBHHHHHHH---------HTTTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECC
T ss_pred             EEEEeCCCCcHHHHHHh---------ccccCCHHHHHHHHHHHHHHHHHhhc---CCcccCCCchheEEEcCCCCEEECc
Confidence            99999999999999952         33569999999999999999999999   6799999999999999999999999


Q ss_pred             CCCccc----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHH---------hh-hh
Q 005680          485 LGLNIC----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKA---------MA-LD  526 (683)
Q Consensus       485 FGla~~----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~---------~~-~~  526 (683)
                      ||++..                            ..++.++||||||+++|+|+||..|+......         .. ..
T Consensus       170 fg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~  249 (302)
T 4e5w_A          170 FGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTV  249 (302)
T ss_dssp             CTTCEECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHH
T ss_pred             ccccccccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCH
Confidence            999843                            23566899999999999999999987532210         00 11


Q ss_pred             HHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          527 QTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       527 ~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      ......+........|..+++.+.+|+.+||+.|  |..|||+.++++.|+.+.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d--p~~Rps~~~ll~~L~~ll  301 (302)
T 4e5w_A          250 TRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQ--PSNRTSFQNLIEGFEALL  301 (302)
T ss_dssp             HHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSS--GGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCCCCCCHHHHHHHHHHcCCC--CCCCCCHHHHHHHHHHHh
Confidence            1122233334455667788999999999999999  889999999999999875

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.5e-37  Score=320.48  Aligned_cols=231  Identities=20%  Similarity=0.330  Sum_probs=193.7

Q ss_pred             cCccccccccccCCceEEEEEEE----CCeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc-ceeEEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL----NHASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVF  407 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~----~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~  407 (683)
                      ++|....+.+|+|+||.||+|.+    ++..||||++.....   ...+.+|+.++.+++||||+++++++.+ ..++||
T Consensus         9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~lv~   88 (287)
T 1u59_A            9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVM   88 (287)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEE
T ss_pred             HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEecCCCcEEEE
Confidence            45555555789999999999986    478899999985332   3578899999999999999999999965 789999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCC
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL  487 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGl  487 (683)
                      ||+++|+|.+++.         .....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+
T Consensus        89 e~~~~~~L~~~l~---------~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~kl~Dfg~  156 (287)
T 1u59_A           89 EMAGGGPLHKFLV---------GKREEIPVSNVAELLHQVSMGMKYLEE---KNFVHRDLAARNVLLVNRHYAKISDFGL  156 (287)
T ss_dssp             ECCTTEEHHHHHT---------TCTTTSCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEEETTEEEECCCTT
T ss_pred             EeCCCCCHHHHHH---------hCCccCCHHHHHHHHHHHHHHHHHHHH---CCEeeCCCchheEEEcCCCCEEECcccc
Confidence            9999999999994         234569999999999999999999999   6799999999999999999999999998


Q ss_pred             ccc----------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCC
Q 005680          488 NIC----------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNA  538 (683)
Q Consensus       488 a~~----------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~  538 (683)
                      +..                            ..++.++|||||||++|+|+| |++||.....     ......+.....
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~-----~~~~~~i~~~~~  231 (287)
T 1u59_A          157 SKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG-----PEVMAFIEQGKR  231 (287)
T ss_dssp             CEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCT-----HHHHHHHHTTCC
T ss_pred             eeeeccCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCH-----HHHHHHHhcCCc
Confidence            742                            235678999999999999999 9999965321     222233344445


Q ss_pred             CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhccc
Q 005680          539 GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKADG  585 (683)
Q Consensus       539 ~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~~~  585 (683)
                      ...|..+++.+.+|+.+||..|  |..||++.++++.|+.+......
T Consensus       232 ~~~~~~~~~~l~~li~~~l~~~--p~~Rps~~~l~~~l~~~~~~~~~  276 (287)
T 1u59_A          232 MECPPECPPELYALMSDCWIYK--WEDRPDFLTVEQRMRACYYSLAS  276 (287)
T ss_dssp             CCCCTTCCHHHHHHHHHTTCSS--GGGSCCHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCcCHHHHHHHHHHcCCC--hhhCcCHHHHHHHHHHHHHhcCC
Confidence            5677788999999999999999  88999999999999999865543

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=1e-37  Score=337.80  Aligned_cols=230  Identities=23%  Similarity=0.347  Sum_probs=189.6

Q ss_pred             cccccccCCceEEEEEEE-------CCeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEe
Q 005680          341 RFRLKCAGDWTNVYRGRL-------NHASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFE  408 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~-------~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~E  408 (683)
                      ..+.+|+|+||.||+|.+       ++..||||++.....   ...+.+|+.++++++|||||++++++.+  ..+||||
T Consensus        75 ~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e  154 (367)
T 3l9p_A           75 LIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLE  154 (367)
T ss_dssp             EEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             EeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCEEEEE
Confidence            346778999999999995       356899999974332   3468899999999999999999999976  7899999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCC---cEEEecC
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL---VAKISGL  485 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~---~~KL~DF  485 (683)
                      |+++|+|.+++.......   .....+++..++.|+.||+.||.|||+   .+|+||||||+||||+.++   .+||+||
T Consensus       155 ~~~~g~L~~~l~~~~~~~---~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~~~~~kL~DF  228 (367)
T 3l9p_A          155 LMAGGDLKSFLRETRPRP---SQPSSLAMLDLLHVARDIACGCQYLEE---NHFIHRDIAARNCLLTCPGPGRVAKIGDF  228 (367)
T ss_dssp             CCTTEEHHHHHHHHSCCS---SSCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESCSSTTCCEEECCC
T ss_pred             eCCCCCHHHHHHhhcccc---CccccccHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChhhEEEecCCCCceEEECCC
Confidence            999999999996542110   123569999999999999999999999   6799999999999999555   5999999


Q ss_pred             CCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCC
Q 005680          486 GLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGN  537 (683)
Q Consensus       486 Gla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~  537 (683)
                      |+++.                           ..++.++|||||||++|+|+| |.+||.....     ......+....
T Consensus       229 G~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~-----~~~~~~i~~~~  303 (367)
T 3l9p_A          229 GMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSN-----QEVLEFVTSGG  303 (367)
T ss_dssp             HHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH-----HHHHHHHHTTC
T ss_pred             ccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH-----HHHHHHHHcCC
Confidence            99842                           347889999999999999998 9999975322     22333444445


Q ss_pred             CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          538 AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       538 ~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      ....+..++..+.+|+.+||+.|  |..|||+.+|++.|+.+....
T Consensus       304 ~~~~~~~~~~~l~~li~~~l~~d--P~~Rps~~eil~~l~~~~~~~  347 (367)
T 3l9p_A          304 RMDPPKNCPGPVYRIMTQCWQHQ--PEDRPNFAIILERIEYCTQDP  347 (367)
T ss_dssp             CCCCCTTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHCH
T ss_pred             CCCCCccCCHHHHHHHHHHcCCC--HhHCcCHHHHHHHHHHHhhCh
Confidence            55667788899999999999999  889999999999999987644

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=2.4e-37  Score=344.36  Aligned_cols=227  Identities=28%  Similarity=0.379  Sum_probs=191.4

Q ss_pred             hcCccccccccccCCceEEEEEEEC-CeeEEEEEcCC-CCCHHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecC
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRLN-HASVAIKTLNN-GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMP  411 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~~-g~~VAvK~l~~-~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~  411 (683)
                      .++|.. .+.+|+|+||.||+|.+. +..||||+++. ....+.|.+|+.+|++++|||||++++++.+ ..+|||||++
T Consensus       183 ~~~~~~-~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~iv~e~~~  261 (452)
T 1fmk_A          183 RESLRL-EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMS  261 (452)
T ss_dssp             GGGEEE-EEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCT
T ss_pred             hhHcee-eeeecCCCCeEEEEEEECCCceEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEcCCceEEEehhhc
Confidence            344433 356789999999999995 57899999984 3456789999999999999999999999976 7899999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      +|+|.+++...        ....+++..++.++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++. 
T Consensus       262 ~gsL~~~l~~~--------~~~~~~~~~~~~i~~qi~~~l~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~  330 (452)
T 1fmk_A          262 KGSLLDFLKGE--------TGKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLI  330 (452)
T ss_dssp             TCBHHHHHSHH--------HHTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCCTTC--
T ss_pred             CCCHHHHHHhc--------CCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChhhEEECCCCCEEECCCccceec
Confidence            99999999532        23468999999999999999999999   6799999999999999999999999999853 


Q ss_pred             -------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChh
Q 005680          491 -------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLD  544 (683)
Q Consensus       491 -------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~  544 (683)
                                               ..++.++|||||||++|+|+| |++||.....     ......+........|..
T Consensus       331 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~-----~~~~~~i~~~~~~~~~~~  405 (452)
T 1fmk_A          331 EDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN-----REVLDQVERGYRMPCPPE  405 (452)
T ss_dssp             ------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCH-----HHHHHHHHTTCCCCCCTT
T ss_pred             CCCceecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCH-----HHHHHHHHcCCCCCCCCC
Confidence                                     346789999999999999999 9999965322     223334444455566778


Q ss_pred             hHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          545 LAEELAGIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      +++.+.+|+.+||+.|  |..|||+.+|+..|+.+.
T Consensus       406 ~~~~l~~li~~cl~~d--P~~Rpt~~~l~~~L~~~~  439 (452)
T 1fmk_A          406 CPESLHDLMCQCWRKE--PEERPTFEYLQAFLEDYF  439 (452)
T ss_dssp             SCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHTTT
T ss_pred             CCHHHHHHHHHHccCC--hhhCcCHHHHHHHHHHHh
Confidence            8999999999999999  889999999999998764

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=2.7e-37  Score=323.99  Aligned_cols=237  Identities=25%  Similarity=0.390  Sum_probs=190.3

Q ss_pred             hcCccccccccccCCceEEEEEEE-------CCeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--c
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL-------NHASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--L  402 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~-------~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~  402 (683)
                      .++|.. .+.+|.|+||.||+|..       ++..||||++.....   ...+.+|+.++++++|||||++++++.+  .
T Consensus        22 ~~~y~~-~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~  100 (314)
T 2ivs_A           22 RKNLVL-GKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGP  100 (314)
T ss_dssp             GGGEEE-EEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred             hhheee-eeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCc
Confidence            344433 36678999999999986       247899999974433   3568899999999999999999999966  7


Q ss_pred             eeEEEeecCCCCchhhhhhcccccc--------------cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCC
Q 005680          403 KCIVFEYMPNGNLRDKLFTSQRNYK--------------NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLT  468 (683)
Q Consensus       403 ~~LV~Ey~~ggsL~~~L~~~~~~~~--------------~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLK  468 (683)
                      .++||||+++|+|.+++........              .......+++..++.++.||+.||.|||+   .+|+|||||
T Consensus       101 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dik  177 (314)
T 2ivs_A          101 LLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAE---MKLVHRDLA  177 (314)
T ss_dssp             CEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHH---TTEECCCCS
T ss_pred             eEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHH---CCCcccccc
Confidence            8999999999999999965421000              00122458999999999999999999999   679999999


Q ss_pred             CCcccccCCCcEEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhH
Q 005680          469 PSSILLDRNLVAKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVE  520 (683)
Q Consensus       469 P~NILld~~~~~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~  520 (683)
                      |+|||++.++.+||+|||++..                           ..++.++|||||||++|+|+| |.+||....
T Consensus       178 p~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~  257 (314)
T 2ivs_A          178 ARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIP  257 (314)
T ss_dssp             GGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred             hheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence            9999999999999999999842                           235789999999999999999 999996532


Q ss_pred             HHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          521 KAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       521 ~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      .     ......+........+..+++.+.+|+.+||+.|  |..|||+.++++.|+.+...
T Consensus       258 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~d--p~~Rps~~~l~~~l~~~~~~  312 (314)
T 2ivs_A          258 P-----ERLFNLLKTGHRMERPDNCSEEMYRLMLQCWKQE--PDKRPVFADISKDLEKMMVK  312 (314)
T ss_dssp             G-----GGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHT
T ss_pred             H-----HHHHHHhhcCCcCCCCccCCHHHHHHHHHHccCC--hhhCcCHHHHHHHHHHHHhh
Confidence            2     1222233334455667788999999999999999  88999999999999998653

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.5e-37  Score=328.69  Aligned_cols=226  Identities=26%  Similarity=0.448  Sum_probs=187.9

Q ss_pred             ccccccCCceEEEEEEEC------CeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeec
Q 005680          342 FRLKCAGDWTNVYRGRLN------HASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYM  410 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~------g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~  410 (683)
                      .+++|+|+||.||+|.+.      +..||||++.....   ...+.+|+.++.+++||||+++++++.+  ..+|||||+
T Consensus        49 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~  128 (333)
T 1mqb_A           49 QKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYM  128 (333)
T ss_dssp             EEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred             ccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEEEEeCC
Confidence            367899999999999872      24599999974433   3468899999999999999999999976  789999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~  490 (683)
                      ++|+|.+++..         ....+++..++.++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..
T Consensus       129 ~~~~L~~~l~~---------~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~  196 (333)
T 1mqb_A          129 ENGALDKFLRE---------KDGEFSVLQLVGMLRGIAAGMKYLAN---MNYVHRDLAARNILVNSNLVCKVSDFGLSRV  196 (333)
T ss_dssp             TTEEHHHHHHH---------TTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCCCC---
T ss_pred             CCCcHHHHHHh---------CCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChheEEECCCCcEEECCCCcchh
Confidence            99999999952         33569999999999999999999999   6799999999999999999999999998743


Q ss_pred             ----------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCC
Q 005680          491 ----------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIW  541 (683)
Q Consensus       491 ----------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~  541 (683)
                                                  ..++.++|||||||++|+|++ |+.||.....     ......+........
T Consensus       197 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~-----~~~~~~~~~~~~~~~  271 (333)
T 1mqb_A          197 LEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSN-----HEVMKAINDGFRLPT  271 (333)
T ss_dssp             --------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH-----HHHHHHHHTTCCCCC
T ss_pred             hccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCH-----HHHHHHHHCCCcCCC
Confidence                                        246778999999999999999 9999964322     222334444445556


Q ss_pred             ChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhcccc
Q 005680          542 PLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKADGL  586 (683)
Q Consensus       542 p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~~~~  586 (683)
                      +..++..+.+|+.+||+.|  |..||++.++++.|+.+.......
T Consensus       272 ~~~~~~~l~~li~~~l~~~--p~~Rps~~~l~~~L~~~~~~~~~~  314 (333)
T 1mqb_A          272 PMDCPSAIYQLMMQCWQQE--RARRPKFADIVSILDKLIRAPDSL  314 (333)
T ss_dssp             CTTCBHHHHHHHHHHTCSS--TTTSCCHHHHHHHHHHHHHSGGGG
T ss_pred             cccCCHHHHHHHHHHcCCC--hhhCcCHHHHHHHHHHHHhcchhh
Confidence            6778899999999999999  889999999999999998765443

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=4.2e-37  Score=325.41  Aligned_cols=233  Identities=23%  Similarity=0.409  Sum_probs=191.2

Q ss_pred             cCccccccccccCCceEEEEEEE------CCeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc----c
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL------NHASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE----L  402 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~------~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----~  402 (683)
                      +.|....+.+|+|+||.||++.+      +|+.||||++.....   ...+.+|+.++++++||||+++++++.+    .
T Consensus        30 ~r~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  109 (318)
T 3lxp_A           30 KRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAAS  109 (318)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTE
T ss_pred             HHHHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCce
Confidence            34445557789999999999875      578999999985433   3568999999999999999999999854    5


Q ss_pred             eeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEE
Q 005680          403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKI  482 (683)
Q Consensus       403 ~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL  482 (683)
                      .++||||+++|+|.+++.           ...+++..++.|+.||+.||.|||+   .+|+||||||+|||++.++.+||
T Consensus       110 ~~lv~e~~~~~~L~~~l~-----------~~~~~~~~~~~i~~~l~~~l~~LH~---~~ivH~Dikp~Nil~~~~~~~kl  175 (318)
T 3lxp_A          110 LQLVMEYVPLGSLRDYLP-----------RHSIGLAQLLLFAQQICEGMAYLHA---QHYIHRDLAARNVLLDNDRLVKI  175 (318)
T ss_dssp             EEEEECCCTTCBHHHHGG-----------GSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEE
T ss_pred             EEEEEecccCCcHHHHHh-----------hCCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCchheEEEcCCCCEEE
Confidence            789999999999999993           2349999999999999999999999   67999999999999999999999


Q ss_pred             ecCCCccc----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHh---------hh
Q 005680          483 SGLGLNIC----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAM---------AL  525 (683)
Q Consensus       483 ~DFGla~~----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~---------~~  525 (683)
                      +|||++..                            ..++.++|||||||++|+|+||..||.......         ..
T Consensus       176 ~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~  255 (318)
T 3lxp_A          176 GDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQM  255 (318)
T ss_dssp             CCGGGCEECCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHH
T ss_pred             CCccccccccccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccch
Confidence            99999853                            135678999999999999999999987533210         01


Q ss_pred             hHHHHHHHh-cCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhcc
Q 005680          526 DQTTLMQVL-DGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKAD  584 (683)
Q Consensus       526 ~~~~~~~il-d~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~~  584 (683)
                      ....+...+ .......+..++..+.+|+.+||+.|  |..|||+.++++.|+.+.....
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d--P~~Rps~~ell~~L~~l~~~~~  313 (318)
T 3lxp_A          256 TVLRLTELLERGERLPRPDKCPAEVYHLMKNCWETE--ASFRPTFENLIPILKTVHEKYQ  313 (318)
T ss_dssp             HHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhcccCCCCCccccHHHHHHHHHHcCCC--cccCcCHHHHHHHHHHHHHhhc
Confidence            111122222 23455667788999999999999999  8899999999999999987654

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=2.4e-37  Score=348.46  Aligned_cols=226  Identities=21%  Similarity=0.374  Sum_probs=190.3

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCC-CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeec
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYM  410 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~  410 (683)
                      .+|.. .+.+|+|+||.||+|.+  ++..||||++.. ....+.|.+|+.+|++++|||||+++|+|.+  ..||||||+
T Consensus       220 ~~~~~-~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~~  298 (495)
T 1opk_A          220 TDITM-KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFM  298 (495)
T ss_dssp             GGEEE-EEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECC
T ss_pred             HHcee-eeEecCCCCeEEEEEEEcCCCeEEEEEEecCcccchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEcc
Confidence            34433 35678999999999999  489999999983 3456889999999999999999999999966  789999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~  490 (683)
                      ++|+|.++|...        ....+++..++.|+.||+.||.|||+   .+|+||||||+||||+.++.+||+|||+++.
T Consensus       299 ~~g~L~~~l~~~--------~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~  367 (495)
T 1opk_A          299 TYGNLLDYLREC--------NRQEVSAVVLLYMATQISSAMEYLEK---KNFIHRNLAARNCLVGENHLVKVADFGLSRL  367 (495)
T ss_dssp             TTCBHHHHHHHS--------CTTTSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECGGGCEEECCTTCEEC
T ss_pred             CCCCHHHHHHhc--------CcCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChhhEEECCCCcEEEeeccccee
Confidence            999999999533        33568999999999999999999999   6799999999999999999999999999853


Q ss_pred             --------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCCh
Q 005680          491 --------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPL  543 (683)
Q Consensus       491 --------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~  543 (683)
                                                ..++.++|||||||++|||+| |.+||.....     ......+........|.
T Consensus       368 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~  442 (495)
T 1opk_A          368 MTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL-----SQVYELLEKDYRMERPE  442 (495)
T ss_dssp             CTTCCEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCG-----GGHHHHHHTTCCCCCCT
T ss_pred             ccCCceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCH-----HHHHHHHHcCCCCCCCC
Confidence                                      235779999999999999999 9999965322     11222233344556677


Q ss_pred             hhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          544 DLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       544 ~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      .+++.+.+|+.+||+.|  |..|||+.+|++.|+.+.
T Consensus       443 ~~~~~l~~li~~cl~~d--P~~RPs~~el~~~L~~~~  477 (495)
T 1opk_A          443 GCPEKVYELMRACWQWN--PSDRPSFAEIHQAFETMF  477 (495)
T ss_dssp             TCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHTSC
T ss_pred             CCCHHHHHHHHHHcCcC--hhHCcCHHHHHHHHHHHH
Confidence            88999999999999999  889999999999998763

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=1.9e-37  Score=323.02  Aligned_cols=229  Identities=21%  Similarity=0.323  Sum_probs=190.1

Q ss_pred             hcCccccccccccCCceEEEEEEE----CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc-ceeE
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL----NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCI  405 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~----~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~L  405 (683)
                      .+.|....+.+|.|+||.||+|.+    .+..||||++....    ....+.+|+.++..++||||+++++++.+ ..++
T Consensus        15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~l   94 (291)
T 1xbb_A           15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWML   94 (291)
T ss_dssp             GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESSSEEE
T ss_pred             chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEECCCCcEE
Confidence            345554445789999999999965    36889999997332    24678999999999999999999999955 7899


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecC
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGL  485 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DF  485 (683)
                      ||||+++|+|.+++.          ....+++..++.++.||+.||.|||+   .+|+||||||+|||++.++.+||+||
T Consensus        95 v~e~~~~~~L~~~l~----------~~~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dikp~Nil~~~~~~~kl~Df  161 (291)
T 1xbb_A           95 VMEMAELGPLNKYLQ----------QNRHVKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDF  161 (291)
T ss_dssp             EEECCTTEEHHHHHH----------HCTTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCC
T ss_pred             EEEeCCCCCHHHHHH----------hCcCCCHHHHHHHHHHHHHHHHHHHh---CCeEcCCCCcceEEEeCCCcEEEccC
Confidence            999999999999994          44569999999999999999999999   67999999999999999999999999


Q ss_pred             CCccc----------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcC
Q 005680          486 GLNIC----------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDG  536 (683)
Q Consensus       486 Gla~~----------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~  536 (683)
                      |++..                            ..++.++||||||+++|+|+| |++||.....     ......+...
T Consensus       162 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~-----~~~~~~~~~~  236 (291)
T 1xbb_A          162 GLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKG-----SEVTAMLEKG  236 (291)
T ss_dssp             TTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCH-----HHHHHHHHTT
T ss_pred             CcceeeccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCH-----HHHHHHHHcC
Confidence            99743                            134678999999999999999 9999975322     1222233334


Q ss_pred             CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          537 NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       537 ~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      .....|..++..+.+++.+||+.|  |..|||+.+|++.|+.+....
T Consensus       237 ~~~~~~~~~~~~l~~li~~~l~~d--p~~Rps~~~l~~~L~~~~~~~  281 (291)
T 1xbb_A          237 ERMGCPAGCPREMYDLMNLCWTYD--VENRPGFAAVELRLRNYYYDV  281 (291)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHTCSS--TTTSCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHcCCC--hhhCcCHHHHHHHHHHHHHHH
Confidence            455667788999999999999999  889999999999999997643

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=3.1e-37  Score=331.04  Aligned_cols=218  Identities=23%  Similarity=0.287  Sum_probs=182.8

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV  406 (683)
                      ++|.. .+++|+|+||.||+|..  +|+.||||+++.     ......+.+|+.+|..++||||+++++++.+  ..|+|
T Consensus         5 ~~y~~-~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv   83 (337)
T 1o6l_A            5 NDFDY-LKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             GGEEE-EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred             HHeEE-EEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence            44543 46778999999999998  689999999862     3345678999999999999999999999966  78999


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      |||++||+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.+|.+||+|||
T Consensus        84 ~E~~~gg~L~~~l~----------~~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~vkL~DFG  150 (337)
T 1o6l_A           84 MEYANGGELFFHLS----------RERVFTEERARFYGAEIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFG  150 (337)
T ss_dssp             EECCTTCBHHHHHH----------HHSCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCT
T ss_pred             EeCCCCCcHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCcCCHHHEEECCCCCEEEeecc
Confidence            99999999999993          44579999999999999999999999   679999999999999999999999999


Q ss_pred             Cccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCC
Q 005680          487 LNIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIW  541 (683)
Q Consensus       487 la~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~  541 (683)
                      +++.                         ..++.++|||||||++|+|++|++||.....     ......+.. ....+
T Consensus       151 ~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~-----~~~~~~i~~-~~~~~  224 (337)
T 1o6l_A          151 LCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH-----ERLFELILM-EEIRF  224 (337)
T ss_dssp             TCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHH-CCCCC
T ss_pred             chhhcccCCCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCH-----HHHHHHHHc-CCCCC
Confidence            9853                         2478899999999999999999999964221     112222222 33456


Q ss_pred             ChhhHHHHHHHHHHhhhcCCCccccc-----cHHHHHHH
Q 005680          542 PLDLAEELAGIALKCLSADQDANRDL-----RIAGVMKE  575 (683)
Q Consensus       542 p~~~~~~l~~Li~~CL~~dP~p~~RP-----s~~eVl~~  575 (683)
                      |..+++.+.+||.+||+.|  |..||     ++.++++.
T Consensus       225 p~~~s~~~~~li~~lL~~d--P~~R~g~~~~~~~ei~~h  261 (337)
T 1o6l_A          225 PRTLSPEAKSLLAGLLKKD--PKQRLGGGPSDAKEVMEH  261 (337)
T ss_dssp             CTTSCHHHHHHHHHHTCSS--TTTSTTCSTTTHHHHHTS
T ss_pred             CCCCCHHHHHHHHHHhhcC--HHHhcCCCCCCHHHHHcC
Confidence            7788999999999999999  78998     78887653

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=4.2e-37  Score=324.90  Aligned_cols=235  Identities=21%  Similarity=0.385  Sum_probs=186.2

Q ss_pred             hhcCccccccccccCCceEEEEEEEC--C---eeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc--c
Q 005680          334 ATEDFSERFRLKCAGDWTNVYRGRLN--H---ASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--L  402 (683)
Q Consensus       334 at~~F~~~~~liG~G~fG~Vykg~~~--g---~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~  402 (683)
                      ..++|.. .+.+|+|+||.||+|.+.  +   ..||||++...    .....+.+|+.++++++||||+++++++.+  .
T Consensus        21 ~~~~y~~-~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   99 (323)
T 3qup_A           21 PEQQFTL-GRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRA   99 (323)
T ss_dssp             C---CEE-EEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC--
T ss_pred             ChhHeEE-eceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecccc
Confidence            3445544 467789999999999973  3   27999999732    234678999999999999999999999855  2


Q ss_pred             ------eeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC
Q 005680          403 ------KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR  476 (683)
Q Consensus       403 ------~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~  476 (683)
                            .++||||+++|+|.+++......    .....+++..++.|+.||+.||.|||+   .+|+||||||+|||++.
T Consensus       100 ~~~~~~~~~v~e~~~~~~L~~~l~~~~~~----~~~~~~~~~~~~~i~~qi~~al~~LH~---~~ivH~Dikp~NIli~~  172 (323)
T 3qup_A          100 KGRLPIPMVILPFMKHGDLHAFLLASRIG----ENPFNLPLQTLVRFMVDIACGMEYLSS---RNFIHRDLAARNCMLAE  172 (323)
T ss_dssp             -----CEEEEEECCTTCBHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECT
T ss_pred             ccCCCccEEEEEeccCCcHHHHHHhhhcc----ccccccCHHHHHHHHHHHHHHHHHHHc---CCcccCCCCcceEEEcC
Confidence                  28999999999999999644210    123369999999999999999999999   67999999999999999


Q ss_pred             CCcEEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHH
Q 005680          477 NLVAKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQT  528 (683)
Q Consensus       477 ~~~~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~  528 (683)
                      ++.+||+|||+++.                           ..++.++|||||||++|+|++ |.+||.....     ..
T Consensus       173 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~-----~~  247 (323)
T 3qup_A          173 DMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIEN-----AE  247 (323)
T ss_dssp             TSCEEECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG-----GG
T ss_pred             CCCEEEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccCh-----HH
Confidence            99999999999843                           236889999999999999999 9999975322     22


Q ss_pred             HHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          529 TLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       529 ~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      ....+........+..++..+.+|+.+||+.|  |..|||+.++++.|+.+....
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d--p~~Rps~~~l~~~l~~~l~~~  300 (323)
T 3qup_A          248 IYNYLIGGNRLKQPPECMEEVYDLMYQCWSAD--PKQRPSFTCLRMELENILGHL  300 (323)
T ss_dssp             HHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSS--GGGSCCHHHHHHHHHHHHHC-
T ss_pred             HHHHHhcCCCCCCCCccCHHHHHHHHHHccCC--hhhCcCHHHHHHHHHHHHHHh
Confidence            33344555556667788899999999999999  889999999999999997653

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=5.9e-37  Score=326.64  Aligned_cols=238  Identities=21%  Similarity=0.332  Sum_probs=187.4

Q ss_pred             hcCccccccccccCCceEEEEEEE-------CCeeEEEEEcCCC---CCHHHHHHHHHHHHhc-CCCCccceeccccc--
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL-------NHASVAIKTLNNG---LSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--  401 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~-------~g~~VAvK~l~~~---~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--  401 (683)
                      .++|.. .+.+|.|+||.||+|.+       ++..||||++...   .....+.+|+.++.++ +||||+++++++.+  
T Consensus        44 ~~~y~~-~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~  122 (344)
T 1rjb_A           44 RENLEF-GKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG  122 (344)
T ss_dssp             GGGEEE-EEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             HHHcee-eeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCC
Confidence            345543 46778999999999996       3468999999732   2346799999999999 89999999999966  


Q ss_pred             ceeEEEeecCCCCchhhhhhcccccc-------------cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCC
Q 005680          402 LKCIVFEYMPNGNLRDKLFTSQRNYK-------------NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLT  468 (683)
Q Consensus       402 ~~~LV~Ey~~ggsL~~~L~~~~~~~~-------------~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLK  468 (683)
                      ..+|||||+++|+|.+++........             .......+++..++.|+.||+.||.|||+   .+|+|||||
T Consensus       123 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dik  199 (344)
T 1rjb_A          123 PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF---KSCVHRDLA  199 (344)
T ss_dssp             SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHH---TTEEETTCS
T ss_pred             ccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCC
Confidence            78999999999999999965421100             00112458999999999999999999999   679999999


Q ss_pred             CCcccccCCCcEEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhH
Q 005680          469 PSSILLDRNLVAKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVE  520 (683)
Q Consensus       469 P~NILld~~~~~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~  520 (683)
                      |+|||++.++.+||+|||++..                           ..++.++|||||||++|+|+| |.+||....
T Consensus       200 p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~  279 (344)
T 1rjb_A          200 ARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIP  279 (344)
T ss_dssp             GGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred             hhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCC
Confidence            9999999999999999999842                           346789999999999999998 999996532


Q ss_pred             HHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          521 KAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       521 ~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      .    .......+........|..+++.+.+|+.+||..|  |..|||+.++++.|+.+...
T Consensus       280 ~----~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d--p~~Rps~~~l~~~l~~~~~~  335 (344)
T 1rjb_A          280 V----DANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFD--SRKRPSFPNLTSFLGCQLAD  335 (344)
T ss_dssp             C----SHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHC--
T ss_pred             c----HHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCC--chhCcCHHHHHHHHHHHHHH
Confidence            1    11112222333445566778899999999999999  88999999999999988654

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.7e-36  Score=320.38  Aligned_cols=227  Identities=22%  Similarity=0.282  Sum_probs=183.9

Q ss_pred             ccccccccCCceEEEEEEE--CCeeEEEEEcCC---CCCHHHHHHHHHHHHhcCCCCccceeccccc----ceeEEEeec
Q 005680          340 ERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN---GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE----LKCIVFEYM  410 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~---~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----~~~LV~Ey~  410 (683)
                      ...+++|+|+||.||+|.+  +|+.||||++..   ......+.+|+.++++++|||||++++++.+    ..+|||||+
T Consensus        12 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~   91 (319)
T 4euu_A           12 LLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFC   91 (319)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEEECC
T ss_pred             EEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEEeCC
Confidence            4456789999999999998  489999999973   2345778899999999999999999998854    568999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccc----cCCCcEEEecCC
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL----DRNLVAKISGLG  486 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILl----d~~~~~KL~DFG  486 (683)
                      ++|+|.+++...       .....+++..++.|+.||+.||.|||+   .+|+||||||+|||+    +.++.+||+|||
T Consensus        92 ~~~~L~~~l~~~-------~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg  161 (319)
T 4euu_A           92 PCGSLYTVLEEP-------SNAYGLPESEFLIVLRDVVGGMNHLRE---NGIVHRNIKPGNIMRVIGEDGQSVYKLTDFG  161 (319)
T ss_dssp             TTCBHHHHHHSG-------GGTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEECTTSCEEEEECCCT
T ss_pred             CCCCHHHHHHHh-------ccccCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEEeccCCCCceEEEccCC
Confidence            999999999644       233459999999999999999999999   679999999999999    888899999999


Q ss_pred             Cccc--------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHh
Q 005680          487 LNIC--------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVL  534 (683)
Q Consensus       487 la~~--------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~il  534 (683)
                      +++.                                ..++.++|||||||++|+|+||++||....... .....+..++
T Consensus       162 ~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~~~~~~~  240 (319)
T 4euu_A          162 AARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPR-RNKEVMYKII  240 (319)
T ss_dssp             TCEECCTTCCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGG-GCHHHHHHHH
T ss_pred             CceecCCCCceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccc-hhHHHHHHHh
Confidence            9843                                245679999999999999999999996322111 1112222222


Q ss_pred             cCC------------------------CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          535 DGN------------------------AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       535 d~~------------------------~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                      .+.                        ....+..++..+.+|+.+||+.|  |.+|||+.++++....-
T Consensus       241 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~d--P~~R~s~~ell~h~~d~  307 (319)
T 4euu_A          241 TGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEAD--QEKCWGFDQFFAETSDI  307 (319)
T ss_dssp             HHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCC--TTTSCCHHHHHHHHHHH
T ss_pred             cCCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCC--hhhhccHHHhhhccHHH
Confidence            211                        11334578889999999999999  88999999999887653

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=6e-37  Score=317.78  Aligned_cols=230  Identities=21%  Similarity=0.381  Sum_probs=192.8

Q ss_pred             hhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC-CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEe
Q 005680          334 ATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFE  408 (683)
Q Consensus       334 at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~E  408 (683)
                      ..++|... +.+|.|+||.||+|.+  ++..||||++... ...+.+.+|+.++++++||||+++++++.+  ..++|||
T Consensus        11 ~~~~~~~~-~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   89 (288)
T 3kfa_A           11 ERTDITMK-HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE   89 (288)
T ss_dssp             CGGGEEEE-EESGGGTTCSEEEEEEGGGTEEEEEEEECSCSTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred             cccceeEE-eecCCCCceeEEEeEecCCCEEEEEEecCcCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEE
Confidence            34555443 5668999999999999  4899999999843 345789999999999999999999999976  7899999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCc
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN  488 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla  488 (683)
                      |+++|+|.+++...        ....+++..++.|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++
T Consensus        90 ~~~~~~L~~~~~~~--------~~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~~l~Dfg~~  158 (288)
T 3kfa_A           90 FMTYGNLLDYLREC--------NRQEVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLS  158 (288)
T ss_dssp             CCTTEEHHHHHHHC--------CTTTSCHHHHHHHHHHHHHHHHHHHH---HTCCCSCCSGGGEEECGGGCEEECCCCGG
T ss_pred             cCCCCcHHHHHHhc--------ccCCccHhHHHHHHHHHHHHHHHHHH---CCccCCCCCcceEEEcCCCCEEEccCccc
Confidence            99999999999533        34569999999999999999999999   67999999999999999999999999988


Q ss_pred             cc--------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCC
Q 005680          489 IC--------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIW  541 (683)
Q Consensus       489 ~~--------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~  541 (683)
                      ..                          ..++.++||||||+++|+|++ |.+||.....     ......+........
T Consensus       159 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~-----~~~~~~~~~~~~~~~  233 (288)
T 3kfa_A          159 RLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL-----SQVYELLEKDYRMER  233 (288)
T ss_dssp             GTSCSSSSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG-----GGHHHHHHTTCCCCC
T ss_pred             eeccCCccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH-----HHHHHHHhccCCCCC
Confidence            53                          346789999999999999999 9999865322     112222333344556


Q ss_pred             ChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          542 PLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       542 p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      |..+++.+.+|+.+||..|  |..|||+.++++.|+.+...
T Consensus       234 ~~~~~~~l~~li~~~l~~d--p~~Rps~~~~~~~l~~~~~~  272 (288)
T 3kfa_A          234 PEGCPEKVYELMRACWQWN--PSDRPSFAEIHQAFETMFQE  272 (288)
T ss_dssp             CTTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhCCC--hhhCcCHHHHHHHHHHHHHh
Confidence            6778899999999999999  88999999999999998764

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=5.8e-37  Score=317.50  Aligned_cols=229  Identities=22%  Similarity=0.355  Sum_probs=189.1

Q ss_pred             hcCccccccccccCCceEEEEEEEC-----CeeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceeccccc-ceeE
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRLN-----HASVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCI  405 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~~-----g~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~L  405 (683)
                      .++|.. .+++|+|+||.||+|.+.     +..||||.+....   ....+.+|+.++++++||||+++++++.+ ..++
T Consensus        11 ~~~y~~-~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   89 (281)
T 3cc6_A           11 REDVVL-NRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEEPTWI   89 (281)
T ss_dssp             GGGEEE-EEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSSSCEE
T ss_pred             ccceEE-EEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCEE
Confidence            344544 367789999999999872     2469999997443   24678899999999999999999999976 7799


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecC
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGL  485 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DF  485 (683)
                      ||||+++|+|.+++..         ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+||
T Consensus        90 v~e~~~~~~L~~~l~~---------~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Df  157 (281)
T 3cc6_A           90 IMELYPYGELGHYLER---------NKNSLKVLTLVLYSLQICKAMAYLES---INCVHRDIAVRNILVASPECVKLGDF  157 (281)
T ss_dssp             EEECCTTCBHHHHHHH---------HTTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEEEETTEEEECCC
T ss_pred             EEecCCCCCHHHHHHh---------ccccCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCccceEEECCCCcEEeCcc
Confidence            9999999999999952         23568999999999999999999999   67999999999999999999999999


Q ss_pred             CCccc--------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCC
Q 005680          486 GLNIC--------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNA  538 (683)
Q Consensus       486 Gla~~--------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~  538 (683)
                      |++..                          ..++.++||||||+++|+|+| |++||.....     ......+.....
T Consensus       158 g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~-----~~~~~~~~~~~~  232 (281)
T 3cc6_A          158 GLSRYIEDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLEN-----KDVIGVLEKGDR  232 (281)
T ss_dssp             CGGGCC---------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCG-----GGHHHHHHHTCC
T ss_pred             CCCcccccccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCCh-----HHHHHHHhcCCC
Confidence            98753                          246788999999999999998 9999964322     112223333344


Q ss_pred             CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          539 GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       539 ~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      ...+..+++.+.+|+.+||..|  |..|||+.+++..|+.+....
T Consensus       233 ~~~~~~~~~~l~~li~~~l~~~--p~~Rps~~ell~~L~~~~~~~  275 (281)
T 3cc6_A          233 LPKPDLCPPVLYTLMTRCWDYD--PSDRPRFTELVCSLSDVYQME  275 (281)
T ss_dssp             CCCCTTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHccCC--chhCcCHHHHHHHHHHHHHhh
Confidence            4556678899999999999999  889999999999999987643

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=2.5e-37  Score=322.24  Aligned_cols=224  Identities=22%  Similarity=0.371  Sum_probs=177.3

Q ss_pred             ccccccCCceEEEEEEECCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecCCCCch
Q 005680          342 FRLKCAGDWTNVYRGRLNHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMPNGNLR  416 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~ggsL~  416 (683)
                      .+.+|+|+||.||+|.+.+ .||||++....    ....+.+|+.++++++||||+++++++.+ ..++||||+++++|.
T Consensus        29 ~~~lG~G~~g~Vy~~~~~~-~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~lv~e~~~~~~L~  107 (289)
T 3og7_A           29 GQRIGSGSFGTVYKGKWHG-DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQWCEGSSLY  107 (289)
T ss_dssp             EEEEEECSSEEEEEEESSS-EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECCCEEEHH
T ss_pred             eeEecCCCCeEEEEEEEcC-ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeeccCCccEEEEEecCCCcHH
Confidence            4567899999999998765 49999997322    23568999999999999999999998866 789999999999999


Q ss_pred             hhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc------
Q 005680          417 DKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC------  490 (683)
Q Consensus       417 ~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~------  490 (683)
                      +++.         .....+++..++.|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..      
T Consensus       108 ~~l~---------~~~~~~~~~~~~~i~~qi~~~L~~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  175 (289)
T 3og7_A          108 HHLH---------ASETKFEMKKLIDIARQTARGMDYLHA---KSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSG  175 (289)
T ss_dssp             HHHT---------TC---CCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTTEEEECCCC----------
T ss_pred             HHHh---------hccCCCCHHHHHHHHHHHHHHHHHHHh---CCcccccCccceEEECCCCCEEEccceeccccccccc
Confidence            9994         234569999999999999999999999   6799999999999999999999999998742      


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhH
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLA  546 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~  546 (683)
                                              ..++.++|||||||++|+|++|+.||...................+.....+..++
T Consensus       176 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (289)
T 3og7_A          176 SHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGSLSPDLSKVRSNCP  255 (289)
T ss_dssp             --------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHHHHHHHTSCCCCTTSSCTTSC
T ss_pred             cccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHHHHHHhcccccCcchhhccccCC
Confidence                                    23566899999999999999999999643221101111111111122233445778


Q ss_pred             HHHHHHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          547 EELAGIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       547 ~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      +.+.+|+.+||+.|  |..|||+.++++.|+.+.
T Consensus       256 ~~l~~li~~~l~~~--p~~Rps~~ell~~L~~l~  287 (289)
T 3og7_A          256 KRMKRLMAECLKKK--RDERPSFPRILAEIEELA  287 (289)
T ss_dssp             HHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHccCC--hhhCCCHHHHHHHHHHHh
Confidence            99999999999999  889999999999998874

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=9.9e-37  Score=352.22  Aligned_cols=228  Identities=20%  Similarity=0.332  Sum_probs=193.1

Q ss_pred             CccccccccccCCceEEEEEEE----CCeeEEEEEcCCC---CCHHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEe
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL----NHASVAIKTLNNG---LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFE  408 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~----~g~~VAvK~l~~~---~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~E  408 (683)
                      ++......+|+|+||.||+|.+    ++..||||+++..   ...+.|.+|+.+|++++|||||+++++|.+ ..+||||
T Consensus       336 ~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~lv~E  415 (613)
T 2ozo_A          336 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVME  415 (613)
T ss_dssp             SEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEESSSEEEEEE
T ss_pred             ceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEeccCCeEEEEE
Confidence            3333333578999999999987    3567999999832   346789999999999999999999999966 7899999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCc
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN  488 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla  488 (683)
                      |+++|+|.+++.         .....+++..+..|+.||+.||.|||+   .+|+||||||+||||+.++.+||+|||++
T Consensus       416 ~~~~g~L~~~l~---------~~~~~l~~~~~~~i~~qi~~~L~~LH~---~~iiHrDlkp~NILl~~~~~vkL~DFGla  483 (613)
T 2ozo_A          416 MAGGGPLHKFLV---------GKREEIPVSNVAELLHQVSMGMKYLEE---KNFVHRNLAARNVLLVNRHYAKISDFGLS  483 (613)
T ss_dssp             CCTTCBHHHHHT---------TCTTTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCCSTT
T ss_pred             eCCCCcHHHHHh---------hccCCCCHHHHHHHHHHHHHHHHHHHH---CCEEcCcCCHHHEEEcCCCcEEEeeccCc
Confidence            999999999994         234569999999999999999999999   67999999999999999999999999998


Q ss_pred             cc----------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCC
Q 005680          489 IC----------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAG  539 (683)
Q Consensus       489 ~~----------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~  539 (683)
                      +.                            ..++.++|||||||++|||+| |+.||.....     ......+..+...
T Consensus       484 ~~~~~~~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~-----~~~~~~i~~~~~~  558 (613)
T 2ozo_A          484 KALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG-----PEVMAFIEQGKRM  558 (613)
T ss_dssp             TTCC--------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCS-----HHHHHHHHTTCCC
T ss_pred             ccccCCCceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCH-----HHHHHHHHcCCCC
Confidence            53                            346789999999999999998 9999975322     2233344445566


Q ss_pred             CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          540 IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       540 ~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      ..|..+++.+.+||.+||..|  |..||++.+|++.|+.+....
T Consensus       559 ~~p~~~~~~l~~li~~cl~~d--P~~RPs~~~l~~~L~~~~~~~  600 (613)
T 2ozo_A          559 ECPPECPPELYALMSDCWIYK--WEDRPDFLTVEQRMRACYYSL  600 (613)
T ss_dssp             CCCTTCCHHHHHHHHHTTCSS--TTTSCCHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHcCCC--hhHCcCHHHHHHHHHHHHHHh
Confidence            777889999999999999999  789999999999999987654

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=1.5e-37  Score=345.20  Aligned_cols=231  Identities=17%  Similarity=0.191  Sum_probs=185.5

Q ss_pred             CHHHHHHhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccc
Q 005680          327 AAEDIRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCC  399 (683)
Q Consensus       327 s~~ei~~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~  399 (683)
                      .+.++...+++|... +++|+|+||.||+|.+  +++.||||++..     ......+.+|+.++..++|||||+++++|
T Consensus        65 ~~~~~~~~~~~y~~~-~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~  143 (437)
T 4aw2_A           65 KVKQMRLHREDFEIL-KVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAF  143 (437)
T ss_dssp             HHHHHSCCGGGEEEE-EEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEE
T ss_pred             hhhcccCChhheEEE-EEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence            344555667788654 6778999999999998  579999999862     22234588999999999999999999999


Q ss_pred             cc--ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC
Q 005680          400 SE--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN  477 (683)
Q Consensus       400 ~~--~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~  477 (683)
                      .+  ..|||||||+||+|.++|..         ....+++..+..|+.||+.||.|||+   .+||||||||+||||+.+
T Consensus       144 ~~~~~~~lV~Ey~~gg~L~~~l~~---------~~~~l~e~~~~~~~~qi~~aL~~LH~---~giiHrDLKp~NILl~~~  211 (437)
T 4aw2_A          144 QDDNNLYLVMDYYVGGDLLTLLSK---------FEDRLPEEMARFYLAEMVIAIDSVHQ---LHYVHRDIKPDNILMDMN  211 (437)
T ss_dssp             ECSSEEEEEECCCTTCBHHHHHHT---------TTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTT
T ss_pred             eeCCEEEEEEecCCCCcHHHHHHH---------ccCCCCHHHHHHHHHHHHHHHHHHHh---CCeEecccCHHHeeEcCC
Confidence            76  78999999999999999942         24579999999999999999999999   779999999999999999


Q ss_pred             CcEEEecCCCccc-------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh
Q 005680          478 LVAKISGLGLNIC-------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD  526 (683)
Q Consensus       478 ~~~KL~DFGla~~-------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~  526 (683)
                      +.+||+|||+|+.                               ..++.++|||||||++|||++|++||.....     
T Consensus       212 g~vkL~DFGla~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~-----  286 (437)
T 4aw2_A          212 GHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESL-----  286 (437)
T ss_dssp             SCEEECCCTTCEECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSH-----
T ss_pred             CCEEEcchhhhhhcccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCCh-----
Confidence            9999999998842                               1367899999999999999999999965322     


Q ss_pred             HHHHHHHhc----CCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          527 QTTLMQVLD----GNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       527 ~~~~~~ild----~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ...+..++.    ...+..+..+++.+.+||.+||..+|++..||++.++++.
T Consensus       287 ~~~~~~i~~~~~~~~~p~~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~H  339 (437)
T 4aw2_A          287 VETYGKIMNHKERFQFPTQVTDVSENAKDLIRRLICSREHRLGQNGIEDFKKH  339 (437)
T ss_dssp             HHHHHHHHTHHHHCCCCSSCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHTS
T ss_pred             hHHHHhhhhccccccCCcccccCCHHHHHHHHHHhcccccccCCCCHHHHhCC
Confidence            112222222    1222233457899999999999988444449999888753

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.2e-36  Score=330.87  Aligned_cols=237  Identities=21%  Similarity=0.333  Sum_probs=192.6

Q ss_pred             cCccccccccccCCceEEEEEEEC---------CeeEEEEEcCCCCCH---HHHHHHHHHHHhc-CCCCccceeccccc-
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRLN---------HASVAIKTLNNGLSE---EDFQAKVSFLTAV-RHPHLVAVMGCCSE-  401 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~~---------g~~VAvK~l~~~~~~---~~~~~Ev~iL~~l-~HpnIV~l~g~~~~-  401 (683)
                      ++|. ..+.+|+|+||.||+|.+.         +..||||++......   ..+.+|+.++.++ +|||||+++++|.+ 
T Consensus        69 ~~y~-i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~  147 (382)
T 3tt0_A           69 DRLV-LGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD  147 (382)
T ss_dssp             GGEE-EEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             hheE-eeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccC
Confidence            3443 3466789999999999962         257999999754433   5688999999999 99999999999976 


Q ss_pred             -ceeEEEeecCCCCchhhhhhcccccc------cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccc
Q 005680          402 -LKCIVFEYMPNGNLRDKLFTSQRNYK------NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL  474 (683)
Q Consensus       402 -~~~LV~Ey~~ggsL~~~L~~~~~~~~------~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILl  474 (683)
                       ..++||||+++|+|.+++........      .......+++..++.|+.||+.||.|||+   .+|+||||||+||||
T Consensus       148 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll  224 (382)
T 3tt0_A          148 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---KKCIHRDLAARNVLV  224 (382)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEE
T ss_pred             CceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCcceEEE
Confidence             78999999999999999965421000      00123469999999999999999999999   679999999999999


Q ss_pred             cCCCcEEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhh
Q 005680          475 DRNLVAKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALD  526 (683)
Q Consensus       475 d~~~~~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~  526 (683)
                      +.++.+||+|||+++.                           ..++.++|||||||++|+|+| |..||.....     
T Consensus       225 ~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~-----  299 (382)
T 3tt0_A          225 TEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPV-----  299 (382)
T ss_dssp             CTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH-----
T ss_pred             cCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCH-----
Confidence            9999999999999852                           236789999999999999999 9999965322     


Q ss_pred             HHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          527 QTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       527 ~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      ......+........|..++..+.+|+.+||+.|  |..|||+.+|++.|+.+....
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d--P~~Rps~~ell~~L~~~~~~~  354 (382)
T 3tt0_A          300 EELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAV--PSQRPTFKQLVEDLDRIVALT  354 (382)
T ss_dssp             HHHHHHHHTTCCCCCCSSCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCC--hhhCcCHHHHHHHHHHHHHHH
Confidence            2223334444555667788999999999999999  889999999999999997654

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=7e-37  Score=322.59  Aligned_cols=214  Identities=19%  Similarity=0.255  Sum_probs=173.8

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCC---CCCHHHHHHHHHHHHhcCCCCccceeccccc---------------
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNN---GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE---------------  401 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~---~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~---------------  401 (683)
                      .+.+|+|+||.||+|.+  +|..||||++..   ....+.+.+|+.+|++++|||||+++++|.+               
T Consensus        11 ~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~   90 (332)
T 3qd2_B           11 IQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEEMDEIWL   90 (332)
T ss_dssp             EEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHHHHC---
T ss_pred             eeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhhhhhhhh
Confidence            35678999999999998  689999999872   2234679999999999999999999998733               


Q ss_pred             --------------------------------------------ceeEEEeecCCCCchhhhhhcccccccccccccCCH
Q 005680          402 --------------------------------------------LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRW  437 (683)
Q Consensus       402 --------------------------------------------~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~  437 (683)
                                                                  ..++||||+++|+|.+++...       ......++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-------~~~~~~~~  163 (332)
T 3qd2_B           91 KDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRR-------CSLEDREH  163 (332)
T ss_dssp             -----------------------------------------CCCEEEEEEECCCSSCHHHHHHTC-------CSGGGSCH
T ss_pred             ccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcc-------cCccchhh
Confidence                                                        278999999999999999654       34456788


Q ss_pred             HHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---------------------------
Q 005680          438 LDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---------------------------  490 (683)
Q Consensus       438 ~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---------------------------  490 (683)
                      ..++.|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++.                           
T Consensus       164 ~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  240 (332)
T 3qd2_B          164 GVCLHIFIQIAEAVEFLHS---KGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTK  240 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CG
T ss_pred             HHHHHHHHHHHHHHHHHHh---CCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCc
Confidence            8899999999999999999   6799999999999999999999999998742                           


Q ss_pred             ----------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcC
Q 005680          491 ----------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSAD  560 (683)
Q Consensus       491 ----------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~d  560 (683)
                                ..++.++|||||||++|+|++|..|+.....       ..........+..+...++.+.+|+.+||+.|
T Consensus       241 ~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  313 (332)
T 3qd2_B          241 LYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERVR-------IITDVRNLKFPLLFTQKYPQEHMMVQDMLSPS  313 (332)
T ss_dssp             GGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHHHH-------HHHHHHTTCCCHHHHHHCHHHHHHHHHHHCSS
T ss_pred             CccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHHHH-------HHHHhhccCCCcccccCChhHHHHHHHHccCC
Confidence                      2467899999999999999999887643211       11222222222223355678899999999999


Q ss_pred             CCccccccHHHHHH
Q 005680          561 QDANRDLRIAGVMK  574 (683)
Q Consensus       561 P~p~~RPs~~eVl~  574 (683)
                        |.+|||+.++++
T Consensus       314 --p~~Rps~~~~l~  325 (332)
T 3qd2_B          314 --PTERPEATDIIE  325 (332)
T ss_dssp             --GGGSCCHHHHHH
T ss_pred             --CCcCCCHHHHhh
Confidence              889999999875

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=9.3e-37  Score=330.42  Aligned_cols=214  Identities=21%  Similarity=0.277  Sum_probs=178.7

Q ss_pred             ccccccccCCceEEEEEEE--CCeeEEEEEcCCCC--------CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEE
Q 005680          340 ERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL--------SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVF  407 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~--------~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~  407 (683)
                      ...+.+|+|+||.||+|..  +|..||||++....        ..+.+.+|+.+|..++|||||++++++.+  ..||||
T Consensus        15 ~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~   94 (361)
T 2yab_A           15 DIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDVVLIL   94 (361)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             EEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEEEEEE
Confidence            4456778999999999998  58999999987221        34689999999999999999999999976  789999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCC----cEEEe
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL----VAKIS  483 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~----~~KL~  483 (683)
                      ||++||+|.+++          .....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++    .+||+
T Consensus        95 e~~~gg~L~~~l----------~~~~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDlkp~NIll~~~~~~~~~vkl~  161 (361)
T 2yab_A           95 ELVSGGELFDFL----------AQKESLSEEEATSFIKQILDGVNYLHT---KKIAHFDLKPENIMLLDKNIPIPHIKLI  161 (361)
T ss_dssp             ECCCSCBHHHHH----------TTCSCCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCTTSSSCCEEEC
T ss_pred             EcCCCCcHHHHH----------HhcCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEeCCCCCccCEEEE
Confidence            999999999999          345679999999999999999999999   6799999999999998877    79999


Q ss_pred             cCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCC
Q 005680          484 GLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG  539 (683)
Q Consensus       484 DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~  539 (683)
                      |||++..                        ..++.++|||||||++|+|++|.+||.....     ...+..+... ..
T Consensus       162 DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~-----~~~~~~i~~~-~~  235 (361)
T 2yab_A          162 DFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK-----QETLANITAV-SY  235 (361)
T ss_dssp             CCSSCEECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH-----HHHHHHHHTT-CC
T ss_pred             ecCCceEcCCCCccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHHHhc-CC
Confidence            9999853                        2578899999999999999999999965322     2222333332 22


Q ss_pred             CCC----hhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          540 IWP----LDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       540 ~~p----~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .++    ..+++.+.+||.+||..|  |..|||+.++++
T Consensus       236 ~~~~~~~~~~s~~~~~li~~~L~~d--P~~R~t~~e~l~  272 (361)
T 2yab_A          236 DFDEEFFSQTSELAKDFIRKLLVKE--TRKRLTIQEALR  272 (361)
T ss_dssp             CCCHHHHTTSCHHHHHHHHHHSCSS--TTTSCCHHHHHT
T ss_pred             CCCchhccCCCHHHHHHHHHHCCCC--hhHCcCHHHHhc
Confidence            223    346788999999999999  889999998875

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=7.8e-37  Score=324.98  Aligned_cols=214  Identities=18%  Similarity=0.267  Sum_probs=178.4

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC-CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCch
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLR  416 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~  416 (683)
                      .+.+|+|+||.||+|..  +|..||+|.+... .....+.+|+.++..++|||||++++++.+  ..++||||++||+|.
T Consensus        10 ~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~g~~L~   89 (321)
T 1tki_A           10 AEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFISGLDIF   89 (321)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCCCCCBHH
T ss_pred             eeEEecCCCeEEEEEEECCCCcEEEEEEEecCcccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEeCCCCCHH
Confidence            45678999999999998  6899999998733 334568899999999999999999999965  789999999999999


Q ss_pred             hhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC--CCcEEEecCCCccc----
Q 005680          417 DKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR--NLVAKISGLGLNIC----  490 (683)
Q Consensus       417 ~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~--~~~~KL~DFGla~~----  490 (683)
                      +++.         .....+++..+..++.||+.||.|||+   .+|+||||||+|||++.  ++.+||+|||++..    
T Consensus        90 ~~l~---------~~~~~~~~~~~~~i~~qi~~al~~lH~---~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~  157 (321)
T 1tki_A           90 ERIN---------TSAFELNEREIVSYVHQVCEALQFLHS---HNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPG  157 (321)
T ss_dssp             HHHT---------SSSCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTT
T ss_pred             HHHH---------hcCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCC
Confidence            9994         233469999999999999999999999   67999999999999987  78999999999853    


Q ss_pred             --------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCC----hhhH
Q 005680          491 --------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWP----LDLA  546 (683)
Q Consensus       491 --------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p----~~~~  546 (683)
                                          ..++.++|||||||++|+|++|.+||.....     ...+..+..... .++    ..++
T Consensus       158 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-----~~~~~~i~~~~~-~~~~~~~~~~s  231 (321)
T 1tki_A          158 DNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN-----QQIIENIMNAEY-TFDEEAFKEIS  231 (321)
T ss_dssp             CEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHHHHHTCC-CCCHHHHTTSC
T ss_pred             CccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCH-----HHHHHHHHcCCC-CCChhhhccCC
Confidence                                2357899999999999999999999965322     222333333321 222    2567


Q ss_pred             HHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          547 EELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       547 ~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ..+.+|+.+||..|  |..|||+.++++.
T Consensus       232 ~~~~~li~~~L~~d--p~~Rpt~~e~l~h  258 (321)
T 1tki_A          232 IEAMDFVDRLLVKE--RKSRMTASEALQH  258 (321)
T ss_dssp             HHHHHHHHTTSCSS--GGGSCCHHHHHHS
T ss_pred             HHHHHHHHHHcCCC--hhHCcCHHHHhcC
Confidence            89999999999999  8899999999874

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=5.6e-37  Score=326.15  Aligned_cols=215  Identities=19%  Similarity=0.248  Sum_probs=175.0

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC---CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG---LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~---~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      .+.+|+|+||.||+|..  +++.||||++...   ...+.+.+|+.+++.++|||||++++++.+  ..||||||+++|+
T Consensus        12 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~~~~   91 (323)
T 3tki_A           12 VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGE   91 (323)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCTTEE
T ss_pred             eeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEEcCCCCc
Confidence            35678999999999998  6899999998632   223568899999999999999999999976  6799999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++          .....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..    
T Consensus        92 L~~~l----------~~~~~~~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  158 (323)
T 3tki_A           92 LFDRI----------EPDIGMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYN  158 (323)
T ss_dssp             GGGGS----------BTTTBCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTTCEECEET
T ss_pred             HHHHH----------hhcCCCCHHHHHHHHHHHHHHHHHHHH---CCccccccchHHEEEeCCCCEEEEEeeccceeccC
Confidence            99999          455679999999999999999999999   6799999999999999999999999999842    


Q ss_pred             -----------------------cC-CCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC-CCCCCChhh
Q 005680          491 -----------------------DQ-LNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG-NAGIWPLDL  545 (683)
Q Consensus       491 -----------------------~~-~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~-~~~~~p~~~  545 (683)
                                             .. ++.++|||||||++|+|++|++||......    .......... ........+
T Consensus       159 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~----~~~~~~~~~~~~~~~~~~~~  234 (323)
T 3tki_A          159 NRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDS----CQEYSDWKEKKTYLNPWKKI  234 (323)
T ss_dssp             TEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTT----SHHHHHHHTTCTTSTTGGGS
T ss_pred             CcccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchH----HHHHHHHhcccccCCccccC
Confidence                                   11 367899999999999999999999643221    1111222222 112223467


Q ss_pred             HHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          546 AEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       546 ~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      +..+.+|+.+||..|  |..|||+.++++.
T Consensus       235 ~~~~~~li~~~L~~d--P~~R~t~~eil~h  262 (323)
T 3tki_A          235 DSAPLALLHKILVEN--PSARITIPDIKKD  262 (323)
T ss_dssp             CHHHHHHHHHHSCSS--TTTSCCHHHHTTC
T ss_pred             CHHHHHHHHHHccCC--hhhCcCHHHHhhC
Confidence            889999999999999  8899999988653

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=5.6e-37  Score=326.38  Aligned_cols=214  Identities=22%  Similarity=0.280  Sum_probs=177.7

Q ss_pred             ccccccccCCceEEEEEEE--CCeeEEEEEcCCC--------CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEE
Q 005680          340 ERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG--------LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVF  407 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~--------~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~  407 (683)
                      ...+.+|+|+||.||+|..  +|..||||++...        .....+.+|+.+|.+++|||||++++++.+  ..++||
T Consensus        14 ~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   93 (326)
T 2y0a_A           14 DTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILIL   93 (326)
T ss_dssp             EEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             EeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence            4456778999999999998  5899999998622        135789999999999999999999999966  789999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCC----cEEEe
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL----VAKIS  483 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~----~~KL~  483 (683)
                      ||+++|+|.+++          .....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++    .+||+
T Consensus        94 e~~~~~~L~~~l----------~~~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~NIll~~~~~~~~~~kl~  160 (326)
T 2y0a_A           94 ELVAGGELFDFL----------AEKESLTEEEATEFLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRIKII  160 (326)
T ss_dssp             ECCCSCBHHHHH----------TTSSCCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESCSSSSSCCEEEC
T ss_pred             EcCCCCCHHHHH----------HhcCCcCHHHHHHHHHHHHHHHHHHHH---CCeEcCCCCHHHEEEecCCCCCCCEEEE
Confidence            999999999999          345679999999999999999999999   6799999999999999887    89999


Q ss_pred             cCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCC
Q 005680          484 GLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG  539 (683)
Q Consensus       484 DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~  539 (683)
                      |||++..                        ..++.++|||||||++|+|++|.+||.....     ...+..+... ..
T Consensus       161 Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-----~~~~~~~~~~-~~  234 (326)
T 2y0a_A          161 DFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK-----QETLANVSAV-NY  234 (326)
T ss_dssp             CCTTCEECCTTSCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH-----HHHHHHHHHT-CC
T ss_pred             ECCCCeECCCCCccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCH-----HHHHHHHHhc-CC
Confidence            9999843                        3467899999999999999999999964222     1112222221 11


Q ss_pred             CCC----hhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          540 IWP----LDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       540 ~~p----~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .++    ..++..+.+|+.+||..|  |..|||+.++++
T Consensus       235 ~~~~~~~~~~~~~~~~li~~~L~~d--P~~Rpt~~e~l~  271 (326)
T 2y0a_A          235 EFEDEYFSNTSALAKDFIRRLLVKD--PKKRMTIQDSLQ  271 (326)
T ss_dssp             CCCHHHHTTSCHHHHHHHHHHSCSS--GGGSCCHHHHHH
T ss_pred             CcCccccccCCHHHHHHHHHHccCC--hhhCCCHHHHhc
Confidence            222    346788999999999999  889999999875

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=3.9e-37  Score=332.26  Aligned_cols=213  Identities=22%  Similarity=0.308  Sum_probs=179.2

Q ss_pred             hcCccccccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhc-CCCCccceeccccc--cee
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKC  404 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~  404 (683)
                      .++|.. .+++|+|+||.||+|..  +|..||||++..     ......+.+|..++..+ +|||||++++++.+  ..|
T Consensus        22 ~~~y~~-~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~  100 (353)
T 3txo_A           22 IDNFEF-IRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLF  100 (353)
T ss_dssp             -CCEEE-EEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             hhheEE-EEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEE
Confidence            355644 46778999999999998  589999999872     23456788999999998 79999999999966  789


Q ss_pred             EEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEec
Q 005680          405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISG  484 (683)
Q Consensus       405 LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~D  484 (683)
                      |||||++||+|.+++.          ....+++..+..|+.||+.||.|||+   .+|+||||||+||||+.+|.+||+|
T Consensus       101 lv~E~~~gg~L~~~l~----------~~~~~~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NILl~~~g~ikL~D  167 (353)
T 3txo_A          101 FVMEFVNGGDLMFHIQ----------KSRRFDEARARFYAAEIISALMFLHD---KGIIYRDLKLDNVLLDHEGHCKLAD  167 (353)
T ss_dssp             EEEECCCSCBHHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECC
T ss_pred             EEEeCCCCCcHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCCcccCCCHHHEEECCCCCEEEcc
Confidence            9999999999999994          44679999999999999999999999   6799999999999999999999999


Q ss_pred             CCCccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCC
Q 005680          485 LGLNIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG  539 (683)
Q Consensus       485 FGla~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~  539 (683)
                      ||+|+.                         ..++.++|||||||++|+|++|++||.....     ...+..++. ...
T Consensus       168 FG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~-----~~~~~~i~~-~~~  241 (353)
T 3txo_A          168 FGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENE-----DDLFEAILN-DEV  241 (353)
T ss_dssp             CTTCBCSCC---------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHH-CCC
T ss_pred             ccceeecccCCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCH-----HHHHHHHHc-CCC
Confidence            999863                         2368899999999999999999999965322     222333333 334


Q ss_pred             CCChhhHHHHHHHHHHhhhcCCCccccccH
Q 005680          540 IWPLDLAEELAGIALKCLSADQDANRDLRI  569 (683)
Q Consensus       540 ~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~  569 (683)
                      .+|..++..+.+|+.+||..|  |..||++
T Consensus       242 ~~p~~~~~~~~~li~~lL~~d--P~~R~~~  269 (353)
T 3txo_A          242 VYPTWLHEDATGILKSFMTKN--PTMRLGS  269 (353)
T ss_dssp             CCCTTSCHHHHHHHHHHTCSS--GGGSTTS
T ss_pred             CCCCCCCHHHHHHHHHHhhhC--HHHccCC
Confidence            567778899999999999999  8899997

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.1e-36  Score=313.57  Aligned_cols=222  Identities=23%  Similarity=0.341  Sum_probs=183.7

Q ss_pred             cccccCCceEEEEEEE--CC---eeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc---ceeEEEeecC
Q 005680          343 RLKCAGDWTNVYRGRL--NH---ASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE---LKCIVFEYMP  411 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g---~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~---~~~LV~Ey~~  411 (683)
                      +++|+|+||.||+|.+  ++   ..||+|.+.....   .+.+.+|+.++++++|||||++++++.+   ..++||||+.
T Consensus        27 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~e~~~  106 (298)
T 3pls_A           27 RVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLLPYMC  106 (298)
T ss_dssp             EEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEECCCT
T ss_pred             ceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEEEeccc
Confidence            6789999999999987  22   3799999974333   3578899999999999999999999965   3489999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      +|+|.+++..         ....+++..++.|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++.. 
T Consensus       107 ~~~L~~~~~~---------~~~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~  174 (298)
T 3pls_A          107 HGDLLQFIRS---------PQRNPTVKDLISFGLQVARGMEYLAE---QKFVHRDLAARNCMLDESFTVKVADFGLARDI  174 (298)
T ss_dssp             TCBHHHHHHC---------TTCCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECCTTSSCTT
T ss_pred             CCCHHHHHhc---------cccCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCcceEEEcCCCcEEeCcCCCcccc
Confidence            9999999952         34568999999999999999999999   6799999999999999999999999999852 


Q ss_pred             ----------------------------cCCCcccccccHHHHHHHHhhC-CCCchhhHHHhhhhHHHHHHHhcCCCCCC
Q 005680          491 ----------------------------DQLNVRSDIRAFGTLLLHLLTG-RNWAGLVEKAMALDQTTLMQVLDGNAGIW  541 (683)
Q Consensus       491 ----------------------------~~~t~ksDVwSlGviL~eLltG-~~Pf~~~~~~~~~~~~~~~~ild~~~~~~  541 (683)
                                                  ..++.++|||||||++|+|+|| .+||.....     ......+........
T Consensus       175 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~-----~~~~~~~~~~~~~~~  249 (298)
T 3pls_A          175 LDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDP-----FDLTHFLAQGRRLPQ  249 (298)
T ss_dssp             TTGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCG-----GGHHHHHHTTCCCCC
T ss_pred             cCCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCH-----HHHHHHhhcCCCCCC
Confidence                                        2467899999999999999995 555543211     122223333444556


Q ss_pred             ChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          542 PLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       542 p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      +..++..+.+|+.+||+.|  |..|||+.++++.|+.+....
T Consensus       250 ~~~~~~~l~~li~~~l~~~--p~~Rps~~~ll~~l~~~~~~l  289 (298)
T 3pls_A          250 PEYCPDSLYQVMQQCWEAD--PAVRPTFRVLVGEVEQIVSAL  289 (298)
T ss_dssp             CTTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHHC
T ss_pred             CccchHHHHHHHHHHccCC--hhhCcCHHHHHHHHHHHHHHH
Confidence            6678899999999999999  889999999999999998754

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-36  Score=323.94  Aligned_cols=228  Identities=20%  Similarity=0.333  Sum_probs=187.7

Q ss_pred             cCccccccccccCCceEEEEEEE--CCee----EEEEEcC---CCCCHHHHHHHHHHHHhcCCCCccceeccccc-ceeE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHAS----VAIKTLN---NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCI  405 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~----VAvK~l~---~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~L  405 (683)
                      ++|.. .+.+|+|+||.||+|.+  ++..    ||+|.+.   .......+.+|+.++.+++||||++++++|.+ ..++
T Consensus        15 ~~y~~-~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   93 (327)
T 3lzb_A           15 TEFKK-IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQL   93 (327)
T ss_dssp             TTEEE-EEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSSEEE
T ss_pred             hHceE-EEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCCceE
Confidence            34433 46778999999999998  4544    5788775   23356789999999999999999999999976 7889


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecC
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGL  485 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DF  485 (683)
                      |++|+++|+|.+++..         ....+++..++.|+.||+.||.|||+   .+|+||||||+|||++.++.+||+||
T Consensus        94 v~~~~~~g~L~~~l~~---------~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kL~Df  161 (327)
T 3lzb_A           94 ITQLMPFGCLLDYVRE---------HKDNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDF  161 (327)
T ss_dssp             EECCCSSCBHHHHHHH---------TTTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETTEEEECCT
T ss_pred             EEEecCCCcHHHHHHh---------cCCCCCHHHHHHHHHHHHHHHHHHhh---CCCcCCCCCHHHEEEcCCCCEEEccC
Confidence            9999999999999953         34569999999999999999999999   67999999999999999999999999


Q ss_pred             CCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCC
Q 005680          486 GLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGN  537 (683)
Q Consensus       486 Gla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~  537 (683)
                      |+++.                           ..++.++|||||||++|+|++ |.+||.....     ......+....
T Consensus       162 G~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~-----~~~~~~~~~~~  236 (327)
T 3lzb_A          162 GLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEKGE  236 (327)
T ss_dssp             TC----------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG-----GGHHHHHHTTC
T ss_pred             cceeEccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCH-----HHHHHHHHcCC
Confidence            99853                           246789999999999999999 9999975322     11222233334


Q ss_pred             CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          538 AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       538 ~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      ....+..++..+.+|+.+||+.|  |..|||+.++++.|+.+....
T Consensus       237 ~~~~~~~~~~~l~~li~~~l~~d--p~~Rps~~ell~~L~~~~~~~  280 (327)
T 3lzb_A          237 RLPQPPICTIDVYMIMRKCWMID--ADSRPKFRELIIEFSKMARDP  280 (327)
T ss_dssp             CCCCCTTBCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHTSH
T ss_pred             CCCCCccCCHHHHHHHHHHcCCC--hhHCcCHHHHHHHHHHHHhCc
Confidence            45567778899999999999999  889999999999999997543

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=1.3e-36  Score=319.80  Aligned_cols=228  Identities=21%  Similarity=0.375  Sum_probs=185.6

Q ss_pred             ccccccCCceEEEEEEE-----CCeeEEEEEcCCCC-C---HHHHHHHHHHHHhcCCCCccceeccccc-------ceeE
Q 005680          342 FRLKCAGDWTNVYRGRL-----NHASVAIKTLNNGL-S---EEDFQAKVSFLTAVRHPHLVAVMGCCSE-------LKCI  405 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~-----~g~~VAvK~l~~~~-~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-------~~~L  405 (683)
                      .+++|.|+||.||+|.+     ++..||||++.... .   ...+.+|+.++++++||||+++++++.+       ..++
T Consensus        39 ~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~  118 (313)
T 3brb_A           39 GKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMV  118 (313)
T ss_dssp             EEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-------CEEE
T ss_pred             ccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccccCCcccEE
Confidence            45678999999999987     23589999997332 2   2568899999999999999999999865       3499


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecC
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGL  485 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DF  485 (683)
                      ||||+++|+|.+++......    .....+++..++.|+.||+.||.|||+   .+|+||||||+|||++.++.+||+||
T Consensus       119 v~e~~~~~~L~~~l~~~~~~----~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dikp~NIli~~~~~~kl~Df  191 (313)
T 3brb_A          119 ILPFMKYGDLHTYLLYSRLE----TGPKHIPLQTLLKFMVDIALGMEYLSN---RNFLHRDLAARNCMLRDDMTVCVADF  191 (313)
T ss_dssp             EEECCTTCBHHHHHHHTTBT----TSCCCCCHHHHHHHHHHHHHHHHHHHT---TTCCCCCCSGGGEEECTTSCEEECSC
T ss_pred             EEecccCCCHHHHHHHhhhh----cCCccCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCcceEEEcCCCcEEEeec
Confidence            99999999999998543210    234679999999999999999999999   67999999999999999999999999


Q ss_pred             CCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCC
Q 005680          486 GLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGN  537 (683)
Q Consensus       486 Gla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~  537 (683)
                      |++..                           ..++.++||||||+++|+|++ |.+||.....     ......+....
T Consensus       192 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~-----~~~~~~~~~~~  266 (313)
T 3brb_A          192 GLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQN-----HEMYDYLLHGH  266 (313)
T ss_dssp             SCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG-----GGHHHHHHTTC
T ss_pred             CcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCH-----HHHHHHHHcCC
Confidence            99842                           236788999999999999999 8899865322     22233444455


Q ss_pred             CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          538 AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       538 ~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      ....+..+++.+.+|+.+||..|  |..|||+.+++..|+.+....
T Consensus       267 ~~~~~~~~~~~l~~li~~~l~~d--p~~Rps~~~l~~~L~~l~~~l  310 (313)
T 3brb_A          267 RLKQPEDCLDELYEIMYSCWRTD--PLDRPTFSVLRLQLEKLLESL  310 (313)
T ss_dssp             CCCCBTTCCHHHHHHHHHTTCSS--GGGSCCHHHHHHHHHHHHHHC
T ss_pred             CCCCCccccHHHHHHHHHHcCCC--hhhCcCHHHHHHHHHHHHHhc
Confidence            55667788899999999999999  889999999999999997654

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=7e-37  Score=334.26  Aligned_cols=219  Identities=17%  Similarity=0.300  Sum_probs=181.6

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcC-----CCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN-----NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~-----~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV  406 (683)
                      ++|. ..+++|+|+||.||+|..  +|..||||++.     .......+.+|+.+|..++|||||+++++|.+  ..|+|
T Consensus        15 ~~y~-i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv   93 (384)
T 4fr4_A           15 DHFE-ILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMV   93 (384)
T ss_dssp             GGEE-EEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             HHeE-EEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence            3443 346778999999999998  57899999986     23345788999999999999999999999976  78999


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      |||++||+|.+++          .....+++..+..|+.||+.||.|||+   .+|+||||||+||||+.+|.+||+|||
T Consensus        94 ~e~~~gg~L~~~l----------~~~~~l~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NIll~~~g~vkL~DFG  160 (384)
T 4fr4_A           94 VDLLLGGDLRYHL----------QQNVHFKEETVKLFICELVMALDYLQN---QRIIHRDMKPDNILLDEHGHVHITDFN  160 (384)
T ss_dssp             ECCCTTEEHHHHH----------HTTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCT
T ss_pred             EecCCCCcHHHHH----------HhcCCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCcHHHeEECCCCCEEEeccc
Confidence            9999999999999          345679999999999999999999999   679999999999999999999999999


Q ss_pred             Cccc---------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCC
Q 005680          487 LNIC---------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG  539 (683)
Q Consensus       487 la~~---------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~  539 (683)
                      ++..                           ..++.++|||||||++|+|++|++||.....   .....+...+.....
T Consensus       161 ~a~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~---~~~~~~~~~~~~~~~  237 (384)
T 4fr4_A          161 IAAMLPRETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSS---TSSKEIVHTFETTVV  237 (384)
T ss_dssp             TCEECCTTCCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTT---SCHHHHHHHHHHCCC
T ss_pred             eeeeccCCCceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCC---ccHHHHHHHHhhccc
Confidence            9853                           1367899999999999999999999964222   111222223333455


Q ss_pred             CCChhhHHHHHHHHHHhhhcCCCcccccc-HHHHH
Q 005680          540 IWPLDLAEELAGIALKCLSADQDANRDLR-IAGVM  573 (683)
Q Consensus       540 ~~p~~~~~~l~~Li~~CL~~dP~p~~RPs-~~eVl  573 (683)
                      .+|..++..+.+||.+||+.|  |..||+ +.+|+
T Consensus       238 ~~p~~~s~~~~~li~~lL~~d--P~~R~s~~~~l~  270 (384)
T 4fr4_A          238 TYPSAWSQEMVSLLKKLLEPN--PDQRFSQLSDVQ  270 (384)
T ss_dssp             CCCTTSCHHHHHHHHHHSCSS--GGGSCCSHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHhcCC--HhHhcccHHHHH
Confidence            667788999999999999999  889998 44443

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=1.1e-36  Score=323.93  Aligned_cols=217  Identities=25%  Similarity=0.352  Sum_probs=181.9

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV  406 (683)
                      ++|.. .+.+|+|+||.||+|..  +|+.||||++..     ......+.+|+.+++.++|||||++++++.+  ..|+|
T Consensus         6 ~~y~~-~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv   84 (318)
T 1fot_A            6 QDFQI-LRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI   84 (318)
T ss_dssp             GGEEE-EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred             HHcEE-EEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence            34443 46778999999999998  689999999862     2345678899999999999999999999976  78999


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      |||++||+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.+|.+||+|||
T Consensus        85 ~e~~~gg~L~~~l~----------~~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~~kL~Dfg  151 (318)
T 1fot_A           85 MDYIEGGELFSLLR----------KSQRFPNPVAKFYAAEVCLALEYLHS---KDIIYRDLKPENILLDKNGHIKITDFG  151 (318)
T ss_dssp             ECCCCSCBHHHHHH----------HTSSCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECTTSCEEECCCS
T ss_pred             EeCCCCCCHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChheEEEcCCCCEEEeecC
Confidence            99999999999994          44579999999999999999999999   679999999999999999999999999


Q ss_pred             Cccc----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChh
Q 005680          487 LNIC----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLD  544 (683)
Q Consensus       487 la~~----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~  544 (683)
                      +++.                      ..++.++|||||||++|+|++|++||.....     ...+..++.. ...+|..
T Consensus       152 ~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-----~~~~~~i~~~-~~~~p~~  225 (318)
T 1fot_A          152 FAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNT-----MKTYEKILNA-ELRFPPF  225 (318)
T ss_dssp             SCEECSSCBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHHHHHC-CCCCCTT
T ss_pred             cceecCCccccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH-----HHHHHHHHhC-CCCCCCC
Confidence            9853                      3478899999999999999999999964221     2223333333 3456777


Q ss_pred             hHHHHHHHHHHhhhcCCCccccc-----cHHHHHH
Q 005680          545 LAEELAGIALKCLSADQDANRDL-----RIAGVMK  574 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RP-----s~~eVl~  574 (683)
                      ++..+.+|+.+||..|  |.+||     ++.+++.
T Consensus       226 ~~~~~~~li~~lL~~d--p~~R~~~~~~~~~~i~~  258 (318)
T 1fot_A          226 FNEDVKDLLSRLITRD--LSQRLGNLQNGTEDVKN  258 (318)
T ss_dssp             SCHHHHHHHHHHTCSC--TTTCTTSSTTTTHHHHT
T ss_pred             CCHHHHHHHHHHhccC--HHHcCCCcCCCHHHHhc
Confidence            8899999999999999  77999     6666653

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=9.4e-37  Score=323.42  Aligned_cols=228  Identities=23%  Similarity=0.317  Sum_probs=185.6

Q ss_pred             ccccccCCceEEEEEEE------CCeeEEEEEcCCCC--CHHHHHHHHHHHHhcCCCCccceecccc--c--ceeEEEee
Q 005680          342 FRLKCAGDWTNVYRGRL------NHASVAIKTLNNGL--SEEDFQAKVSFLTAVRHPHLVAVMGCCS--E--LKCIVFEY  409 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~------~g~~VAvK~l~~~~--~~~~~~~Ev~iL~~l~HpnIV~l~g~~~--~--~~~LV~Ey  409 (683)
                      .+.+|+|+||.||+|.+      ++..||||++....  ....+.+|+.++.+++||||+++++++.  +  ..++||||
T Consensus        28 ~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~  107 (327)
T 3lxl_A           28 ISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEY  107 (327)
T ss_dssp             EEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEEEEEEC
T ss_pred             hhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEEEEEee
Confidence            46778999999999984      57899999997433  2356899999999999999999999874  2  57899999


Q ss_pred             cCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCcc
Q 005680          410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNI  489 (683)
Q Consensus       410 ~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~  489 (683)
                      +++|+|.+++...         ...+++..++.|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++.
T Consensus       108 ~~~~~L~~~l~~~---------~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~  175 (327)
T 3lxl_A          108 LPSGCLRDFLQRH---------RARLDASRLLLYSSQICKGMEYLGS---RRCVHRDLAARNILVESEAHVKIADFGLAK  175 (327)
T ss_dssp             CTTCBHHHHHHHH---------GGGCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCGGGCE
T ss_pred             cCCCCHHHHHHhc---------ccCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCChhhEEECCCCCEEEcccccce
Confidence            9999999999532         3469999999999999999999999   679999999999999999999999999985


Q ss_pred             c----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhh----------hhHHHHH
Q 005680          490 C----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMA----------LDQTTLM  531 (683)
Q Consensus       490 ~----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~----------~~~~~~~  531 (683)
                      .                            ..++.++|||||||++|+|++|..||........          .......
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (327)
T 3lxl_A          176 LLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLE  255 (327)
T ss_dssp             ECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHH
T ss_pred             ecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHH
Confidence            3                            1246799999999999999999999865332100          0011222


Q ss_pred             HHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          532 QVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       532 ~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      .+........+..+++.+.+|+.+||+.|  |..|||+.++++.|+.+....
T Consensus       256 ~~~~~~~~~~~~~~~~~l~~li~~~l~~d--P~~Rps~~ell~~L~~~~~~~  305 (327)
T 3lxl_A          256 LLEEGQRLPAPPACPAEVHELMKLCWAPS--PQDRPSFSALGPQLDMLWSGS  305 (327)
T ss_dssp             HHHTTCCCCCCTTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHC----
T ss_pred             HhhcccCCCCCCcccHHHHHHHHHHcCCC--hhhCcCHHHHHHHHHHHHhhh
Confidence            33334455667788999999999999999  889999999999999886543

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=1.6e-36  Score=316.53  Aligned_cols=223  Identities=23%  Similarity=0.387  Sum_probs=184.9

Q ss_pred             ccccccCCceEEEEEEEC-----CeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc---ceeEEEeec
Q 005680          342 FRLKCAGDWTNVYRGRLN-----HASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE---LKCIVFEYM  410 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~-----g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~---~~~LV~Ey~  410 (683)
                      .+++|+|+||.||+|.+.     +..||+|.+.....   ...+.+|+.++++++||||++++++|.+   ..++||||+
T Consensus        30 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~e~~  109 (298)
T 3f66_A           30 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM  109 (298)
T ss_dssp             EEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEEECC
T ss_pred             cceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEEEEeCC
Confidence            467889999999999972     23699999874333   3568899999999999999999998643   679999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~  490 (683)
                      ++|+|.+++.         .....+++..++.|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..
T Consensus       110 ~~~~L~~~l~---------~~~~~~~~~~~~~i~~ql~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~  177 (298)
T 3f66_A          110 KHGDLRNFIR---------NETHNPTVKDLIGFGLQVAKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARD  177 (298)
T ss_dssp             TTCBHHHHHH---------CTTCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECSCGGGCC
T ss_pred             CCCCHHHHHH---------hcccCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCchheEEECCCCCEEECccccccc
Confidence            9999999995         234568999999999999999999999   6799999999999999999999999999852


Q ss_pred             -----------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCC
Q 005680          491 -----------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGI  540 (683)
Q Consensus       491 -----------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~  540 (683)
                                                   ..++.++||||||+++|+|++ |.+||.....     ......+.......
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  252 (298)
T 3f66_A          178 MYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNT-----FDITVYLLQGRRLL  252 (298)
T ss_dssp             CSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCT-----TTHHHHHHTTCCCC
T ss_pred             ccccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCH-----HHHHHHHhcCCCCC
Confidence                                         246789999999999999999 6677754221     12223344444555


Q ss_pred             CChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          541 WPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       541 ~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      .|..++..+.+++.+||+.|  |..|||+.++++.|+.+....
T Consensus       253 ~~~~~~~~l~~li~~~l~~~--p~~Rps~~ell~~L~~~~~~~  293 (298)
T 3f66_A          253 QPEYCPDPLYEVMLKCWHPK--AEMRPSFSELVSRISAIFSTF  293 (298)
T ss_dssp             CCTTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHTS
T ss_pred             CCccCCHHHHHHHHHHcCCC--hhhCcCHHHHHHHHHHHHHhh
Confidence            56678899999999999999  889999999999999997643

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=5.9e-37  Score=329.97  Aligned_cols=219  Identities=24%  Similarity=0.339  Sum_probs=182.3

Q ss_pred             HhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhc-CCCCccceeccccc--c
Q 005680          333 LATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--L  402 (683)
Q Consensus       333 ~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~  402 (683)
                      ...++|.. .+++|+|+||.||+|..  +|+.||||+++.     ......+..|..++..+ +|||||++++++.+  .
T Consensus        14 ~~~~~y~~-~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~   92 (345)
T 1xjd_A           14 LKIEDFIL-HKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKEN   92 (345)
T ss_dssp             --CTTEEE-EEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSE
T ss_pred             CChHHeEE-EEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCE
Confidence            34566654 46778999999999998  589999999972     34456788999999987 99999999999976  7


Q ss_pred             eeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEE
Q 005680          403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKI  482 (683)
Q Consensus       403 ~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL  482 (683)
                      .||||||++||+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.+|.+||
T Consensus        93 ~~lv~E~~~gg~L~~~l~----------~~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~vkL  159 (345)
T 1xjd_A           93 LFFVMEYLNGGDLMYHIQ----------SCHKFDLSRATFYAAEIILGLQFLHS---KGIVYRDLKLDNILLDKDGHIKI  159 (345)
T ss_dssp             EEEEEECCTTCBHHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEE
T ss_pred             EEEEEeCCCCCcHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCChhhEEECCCCCEEE
Confidence            899999999999999994          44579999999999999999999999   67999999999999999999999


Q ss_pred             ecCCCccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCC
Q 005680          483 SGLGLNIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGN  537 (683)
Q Consensus       483 ~DFGla~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~  537 (683)
                      +|||+++.                         ..++.++|||||||++|+|++|++||.....     ...+..+.. .
T Consensus       160 ~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~-----~~~~~~i~~-~  233 (345)
T 1xjd_A          160 ADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDE-----EELFHSIRM-D  233 (345)
T ss_dssp             CCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHH-C
T ss_pred             eEChhhhhcccCCCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCH-----HHHHHHHHh-C
Confidence            99999853                         2468899999999999999999999965322     122222322 3


Q ss_pred             CCCCChhhHHHHHHHHHHhhhcCCCccccccHH-HHH
Q 005680          538 AGIWPLDLAEELAGIALKCLSADQDANRDLRIA-GVM  573 (683)
Q Consensus       538 ~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~-eVl  573 (683)
                      ...+|..++..+.+|+.+||..|  |..||++. +++
T Consensus       234 ~~~~p~~~s~~~~~li~~lL~~d--p~~R~~~~~~i~  268 (345)
T 1xjd_A          234 NPFYPRWLEKEAKDLLVKLFVRE--PEKRLGVRGDIR  268 (345)
T ss_dssp             CCCCCTTSCHHHHHHHHHHSCSS--GGGSBTTBSCGG
T ss_pred             CCCCCcccCHHHHHHHHHHhcCC--HhHcCCChHHHH
Confidence            34567778899999999999999  88999987 554

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=1e-36  Score=328.53  Aligned_cols=217  Identities=18%  Similarity=0.270  Sum_probs=182.3

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV  406 (683)
                      ++|.. .+.+|+|+||.||+|..  +|..||||++..     ......+.+|+.+|..++|||||++++++.+  ..|||
T Consensus        41 ~~y~~-~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  119 (350)
T 1rdq_E           41 DQFDR-IKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV  119 (350)
T ss_dssp             GGEEE-EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             HHCEE-EEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEE
Confidence            44543 46778999999999998  689999999862     2345678999999999999999999999976  78999


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      |||++||+|.+++.          ....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.+|.+||+|||
T Consensus       120 ~e~~~gg~L~~~l~----------~~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~~kL~DFg  186 (350)
T 1rdq_E          120 MEYVAGGEMFSHLR----------RIGRFSEPHARFYAAQIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDFG  186 (350)
T ss_dssp             EECCTTCBHHHHHH----------HHCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCT
T ss_pred             EcCCCCCcHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCccceEEECCCCCEEEcccc
Confidence            99999999999994          34569999999999999999999999   679999999999999999999999999


Q ss_pred             Cccc----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChh
Q 005680          487 LNIC----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLD  544 (683)
Q Consensus       487 la~~----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~  544 (683)
                      +++.                      ..++.++|||||||++|+|++|++||.....     ...+..+... ...+|..
T Consensus       187 ~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~-----~~~~~~i~~~-~~~~p~~  260 (350)
T 1rdq_E          187 FAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQP-----IQIYEKIVSG-KVRFPSH  260 (350)
T ss_dssp             TCEECSSCBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHC-CCCCCTT
T ss_pred             cceeccCCcccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCH-----HHHHHHHHcC-CCCCCCC
Confidence            9853                      3578899999999999999999999964321     2223333333 3456778


Q ss_pred             hHHHHHHHHHHhhhcCCCcccccc-----HHHHHH
Q 005680          545 LAEELAGIALKCLSADQDANRDLR-----IAGVMK  574 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RPs-----~~eVl~  574 (683)
                      ++..+.+||.+||+.|  |.+||+     +.+++.
T Consensus       261 ~~~~~~~li~~lL~~d--p~~R~~~~~~~~~ei~~  293 (350)
T 1rdq_E          261 FSSDLKDLLRNLLQVD--LTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             CCHHHHHHHHHHSCSC--TTTCTTSSTTTTHHHHT
T ss_pred             CCHHHHHHHHHHhhcC--HHhccCCccCCHHHHHh
Confidence            8999999999999999  789998     666653

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=4.9e-37  Score=323.93  Aligned_cols=245  Identities=21%  Similarity=0.325  Sum_probs=196.5

Q ss_pred             ccCHHHHHHhhcCccccccccccCCceEEEEEEEC-------CeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccc
Q 005680          325 EYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLN-------HASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVA  394 (683)
Q Consensus       325 ~~s~~ei~~at~~F~~~~~liG~G~fG~Vykg~~~-------g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~  394 (683)
                      .+..+++....++|... +.+|+|+||.||+|.+.       +..||||.+.....   ...+.+|+.+++.++||||++
T Consensus        14 ~~~~~~~~~~~~~y~~~-~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~   92 (322)
T 1p4o_A           14 VYVPDEWEVAREKITMS-RELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVR   92 (322)
T ss_dssp             CCCCCTTBCCGGGEEEE-EEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCC
T ss_pred             ccChhhhcchhhheeee-eEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEee
Confidence            44555555666677554 56789999999999863       57899999974433   246889999999999999999


Q ss_pred             eeccccc--ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcc
Q 005680          395 VMGCCSE--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSI  472 (683)
Q Consensus       395 l~g~~~~--~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NI  472 (683)
                      +++++.+  ..++||||+++|+|.+++...............+++..++.++.||+.||.|||+   .+|+||||||+||
T Consensus        93 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~NI  169 (322)
T 1p4o_A           93 LLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNC  169 (322)
T ss_dssp             EEEEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCSGGGE
T ss_pred             eEEEEccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHH---CCCccCCCccceE
Confidence            9999966  7899999999999999996542110000122567999999999999999999999   6799999999999


Q ss_pred             cccCCCcEEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhh
Q 005680          473 LLDRNLVAKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMA  524 (683)
Q Consensus       473 Lld~~~~~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~  524 (683)
                      |++.++.+||+|||++..                           ..++.++|||||||++|+|+| |.+||.....   
T Consensus       170 li~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~---  246 (322)
T 1p4o_A          170 MVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSN---  246 (322)
T ss_dssp             EECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCH---
T ss_pred             EEcCCCeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCH---
Confidence            999999999999999852                           246789999999999999999 8899865322   


Q ss_pred             hhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          525 LDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       525 ~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                        ......+........+..++..+.+|+.+||+.|  |..|||+.++++.|+.+.
T Consensus       247 --~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d--p~~Rps~~e~l~~L~~~~  298 (322)
T 1p4o_A          247 --EQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYN--PKMRPSFLEIISSIKEEM  298 (322)
T ss_dssp             --HHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHGGGS
T ss_pred             --HHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCC--cccCcCHHHHHHHHHHhh
Confidence              2223334444455567788899999999999999  889999999999987764

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=7.5e-37  Score=332.36  Aligned_cols=224  Identities=24%  Similarity=0.389  Sum_probs=182.6

Q ss_pred             ccccccCCceEEEEEEE--C-C--eeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceeccccc---ceeEEEeec
Q 005680          342 FRLKCAGDWTNVYRGRL--N-H--ASVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE---LKCIVFEYM  410 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~-g--~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~---~~~LV~Ey~  410 (683)
                      .+++|+|+||.||+|.+  + +  ..||||.+....   ....|.+|+.++++++|||||+++++|.+   ..++||||+
T Consensus        94 ~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv~e~~  173 (373)
T 3c1x_A           94 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM  173 (373)
T ss_dssp             EEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEEEECC
T ss_pred             CcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEEEECC
Confidence            35789999999999987  2 2  469999987332   24678999999999999999999998743   679999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~  490 (683)
                      ++|+|.+++.         .....+++..++.++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++.
T Consensus       174 ~~g~L~~~l~---------~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~  241 (373)
T 3c1x_A          174 KHGDLRNFIR---------NETHNPTVKDLIGFGLQVAKGMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARD  241 (373)
T ss_dssp             TTCBHHHHHH---------CTTCCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC-----
T ss_pred             CCCCHHHHHh---------hcccCCCHHHHHHHHHHHHHHHHHHHH---CCEecCccchheEEECCCCCEEEeecccccc
Confidence            9999999995         234568999999999999999999999   6799999999999999999999999999852


Q ss_pred             -----------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCC
Q 005680          491 -----------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGI  540 (683)
Q Consensus       491 -----------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~  540 (683)
                                                   ..++.++|||||||++|+|+| |.+||.....     ......+.......
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~-----~~~~~~~~~~~~~~  316 (373)
T 3c1x_A          242 MYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNT-----FDITVYLLQGRRLL  316 (373)
T ss_dssp             ----------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCS-----SCHHHHHHTTCCCC
T ss_pred             ccccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCH-----HHHHHHHHcCCCCC
Confidence                                         346789999999999999999 7788864321     11222334444455


Q ss_pred             CChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhcc
Q 005680          541 WPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKAD  584 (683)
Q Consensus       541 ~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~~  584 (683)
                      .|..++..+.+++.+||+.|  |..|||+.++++.|+.+.....
T Consensus       317 ~p~~~~~~l~~li~~cl~~d--p~~RPs~~ell~~L~~i~~~~~  358 (373)
T 3c1x_A          317 QPEYCPDPLYEVMLKCWHPK--AEMRPSFSELVSRISAIFSTFI  358 (373)
T ss_dssp             CCTTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHTCC
T ss_pred             CCCCCCHHHHHHHHHHcCCC--hhhCcCHHHHHHHHHHHHHhcc
Confidence            56778899999999999999  8899999999999999986543

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=8.8e-37  Score=347.11  Aligned_cols=226  Identities=28%  Similarity=0.381  Sum_probs=190.8

Q ss_pred             cCccccccccccCCceEEEEEEEC-CeeEEEEEcCC-CCCHHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecCC
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRLN-HASVAIKTLNN-GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMPN  412 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~~-g~~VAvK~l~~-~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~g  412 (683)
                      ++|.. .+.+|+|+||.||+|.+. +..||||+++. ....+.|.+|+.+|++++|||||+++++|.+ ..||||||+++
T Consensus       267 ~~~~~-~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~lv~e~~~~  345 (535)
T 2h8h_A          267 ESLRL-EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSK  345 (535)
T ss_dssp             GGEEE-EEEEEECSSEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTT
T ss_pred             hhhhh-heecccCCCeEEEEEEECCCceEEEEEeCCCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEeeccceEeeehhcC
Confidence            34433 356789999999999995 57899999983 3456789999999999999999999999976 78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.++|...        ....+++..++.|+.||+.||.|||+   .+||||||||+||||+.++.+||+|||+++.  
T Consensus       346 gsL~~~l~~~--------~~~~l~~~~~~~i~~qi~~~L~~LH~---~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~  414 (535)
T 2h8h_A          346 GSLLDFLKGE--------TGKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE  414 (535)
T ss_dssp             EEHHHHHSHH--------HHTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCTTSTTTCC
T ss_pred             CcHHHHHhhc--------CCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCHhhEEEcCCCcEEEcccccceecC
Confidence            9999999532        23468999999999999999999999   6799999999999999999999999999853  


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhh
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDL  545 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~  545 (683)
                                              ..++.++|||||||+||||+| |+.||.....     ...+..+........+..+
T Consensus       415 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~-----~~~~~~i~~~~~~~~~~~~  489 (535)
T 2h8h_A          415 DNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN-----REVLDQVERGYRMPCPPEC  489 (535)
T ss_dssp             CHHHHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCH-----HHHHHHHHTTCCCCCCTTC
T ss_pred             CCceecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH-----HHHHHHHHcCCCCCCCCCC
Confidence                                    346789999999999999999 9999965322     2223344444455667788


Q ss_pred             HHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          546 AEELAGIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       546 ~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      +..+.+||.+||+.|  |..|||+.+|+..|+.+.
T Consensus       490 ~~~l~~li~~cl~~d--P~~RPt~~~l~~~L~~~~  522 (535)
T 2h8h_A          490 PESLHDLMCQCWRKE--PEERPTFEYLQAFLEDYF  522 (535)
T ss_dssp             CHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHTSS
T ss_pred             CHHHHHHHHHHcCCC--hhHCcCHHHHHHHHHHHh
Confidence            999999999999999  889999999999998764

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=1.2e-36  Score=318.93  Aligned_cols=237  Identities=21%  Similarity=0.310  Sum_probs=188.6

Q ss_pred             cCccccccccccCCceEEEEEEE-------CCeeEEEEEcCCCCC---HHHHHHHHHHHHhc-CCCCccceeccccc--c
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL-------NHASVAIKTLNNGLS---EEDFQAKVSFLTAV-RHPHLVAVMGCCSE--L  402 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~-------~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~  402 (683)
                      ++|.. .+.+|.|+||.||+|.+       ++..||||++.....   .+.+.+|+.++.++ +||||++++++|.+  .
T Consensus        23 ~~y~~-~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~  101 (313)
T 1t46_A           23 NRLSF-GKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGP  101 (313)
T ss_dssp             GGEEE-EEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             hhhhH-HHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCC
Confidence            34433 46678999999999985       358899999984433   36789999999999 99999999999966  7


Q ss_pred             eeEEEeecCCCCchhhhhhcccccc--------cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccc
Q 005680          403 KCIVFEYMPNGNLRDKLFTSQRNYK--------NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL  474 (683)
Q Consensus       403 ~~LV~Ey~~ggsL~~~L~~~~~~~~--------~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILl  474 (683)
                      .++||||+++|+|.+++........        .......+++..++.++.||+.||.|||+   .+|+||||||+|||+
T Consensus       102 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~  178 (313)
T 1t46_A          102 TLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS---KNCIHRDLAARNILL  178 (313)
T ss_dssp             CEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEE
T ss_pred             cEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCccceEEE
Confidence            8999999999999999965421000        00112359999999999999999999999   679999999999999


Q ss_pred             cCCCcEEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhh
Q 005680          475 DRNLVAKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALD  526 (683)
Q Consensus       475 d~~~~~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~  526 (683)
                      +.++.+||+|||++..                           ..++.++|||||||++|+|+| |.+||.....    .
T Consensus       179 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~----~  254 (313)
T 1t46_A          179 THGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPV----D  254 (313)
T ss_dssp             ETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCS----S
T ss_pred             cCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccc----h
Confidence            9999999999998743                           246788999999999999999 9999865321    1


Q ss_pred             HHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          527 QTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       527 ~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      ......+........+..++..+.+|+.+||+.|  |..|||+.++++.|+.+...
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d--p~~Rps~~ell~~L~~~~~~  308 (313)
T 1t46_A          255 SKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDAD--PLKRPTFKQIVQLIEKQISE  308 (313)
T ss_dssp             HHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHhccCCCCCCcccCCHHHHHHHHHHcCCC--chhCcCHHHHHHHHHHHHHH
Confidence            1111122223334445678899999999999999  88999999999999998764

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=8.3e-37  Score=319.89  Aligned_cols=220  Identities=20%  Similarity=0.278  Sum_probs=181.1

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcCCC--C---CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG--L---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~--~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      ..+.+|+|+||.||+|..  ++..||||++...  .   ....+.+|+.++.+++||||+++++++.+  ..|+||||++
T Consensus        15 i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~   94 (294)
T 4eqm_A           15 IVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVMEYIE   94 (294)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEEECCC
T ss_pred             EEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEEeCCC
Confidence            346778999999999997  6899999998521  1   23578899999999999999999999966  6899999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      ||+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++.. 
T Consensus        95 g~~L~~~l~----------~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~  161 (294)
T 4eqm_A           95 GPTLSEYIE----------SHGPLSVDTAINFTNQILDGIKHAHD---MRIVHRDIKPQNILIDSNKTLKIFDFGIAKAL  161 (294)
T ss_dssp             SCBHHHHHH----------HHCSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCSSSTTC
T ss_pred             CCCHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEEeCCCcccc
Confidence            999999993          44579999999999999999999999   6799999999999999999999999999853 


Q ss_pred             -------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCC----CC
Q 005680          491 -------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG----IW  541 (683)
Q Consensus       491 -------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~----~~  541 (683)
                                               ..++.++|||||||++|+|+||++||......     ......+....+    ..
T Consensus       162 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~-----~~~~~~~~~~~~~~~~~~  236 (294)
T 4eqm_A          162 SETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAV-----SIAIKHIQDSVPNVTTDV  236 (294)
T ss_dssp             -------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHH-----HHHHHHHSSCCCCHHHHS
T ss_pred             ccccccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChH-----HHHHHHhhccCCCcchhc
Confidence                                     24678899999999999999999999653221     111122222111    22


Q ss_pred             ChhhHHHHHHHHHHhhhcCCCccccc-cHHHHHHHHHHHH
Q 005680          542 PLDLAEELAGIALKCLSADQDANRDL-RIAGVMKELDEVR  580 (683)
Q Consensus       542 p~~~~~~l~~Li~~CL~~dP~p~~RP-s~~eVl~~L~~l~  580 (683)
                      +..+++.+.+++.+||+.|  |.+|| ++.++...|..+.
T Consensus       237 ~~~~~~~l~~li~~~l~~d--p~~R~~~~~~l~~~l~~~~  274 (294)
T 4eqm_A          237 RKDIPQSLSNVILRATEKD--KANRYKTIQEMKDDLSSVL  274 (294)
T ss_dssp             CTTSCHHHHHHHHHHSCSS--GGGSCSSHHHHHHHHHTSS
T ss_pred             ccCCCHHHHHHHHHHhcCC--HhHccccHHHHHHHHHHHH
Confidence            3457889999999999999  88998 7888888887653

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=2.3e-36  Score=320.38  Aligned_cols=238  Identities=23%  Similarity=0.394  Sum_probs=190.1

Q ss_pred             cCccccccccccCCceEEEEEEE--CCee--EEEEEcCC---CCCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHAS--VAIKTLNN---GLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCI  405 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~--VAvK~l~~---~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~L  405 (683)
                      ++|.. .+++|.|+||.||+|.+  +|..  ||||.+..   ......+.+|+.++.++ +||||+++++++.+  ..++
T Consensus        25 ~~y~~-~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~l  103 (327)
T 1fvr_A           25 NDIKF-QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYL  103 (327)
T ss_dssp             GGCEE-EEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEE
T ss_pred             HHccc-eeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEE
Confidence            34433 46778999999999997  5664  49999873   22346789999999999 89999999999965  7899


Q ss_pred             EEeecCCCCchhhhhhcccccc------cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYK------NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV  479 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~------~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~  479 (683)
                      ||||+++|+|.+++........      .......+++..++.|+.||+.||.|||+   .+|+||||||+|||++.++.
T Consensus       104 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIl~~~~~~  180 (327)
T 1fvr_A          104 AIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYV  180 (327)
T ss_dssp             EECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECGGGC
T ss_pred             EEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCccceEEEcCCCe
Confidence            9999999999999964310000      00123479999999999999999999999   67999999999999999999


Q ss_pred             EEEecCCCccc------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHh
Q 005680          480 AKISGLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVL  534 (683)
Q Consensus       480 ~KL~DFGla~~------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~il  534 (683)
                      +||+|||+++.                        ..++.++|||||||++|+|+| |++||.....     ......+.
T Consensus       181 ~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~-----~~~~~~~~  255 (327)
T 1fvr_A          181 AKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC-----AELYEKLP  255 (327)
T ss_dssp             EEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCH-----HHHHHHGG
T ss_pred             EEEcccCcCccccccccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcH-----HHHHHHhh
Confidence            99999999852                        235789999999999999998 9999965322     12223344


Q ss_pred             cCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhcc
Q 005680          535 DGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKAD  584 (683)
Q Consensus       535 d~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~~  584 (683)
                      .......+..+++.+.+|+.+||..|  |..|||+.++++.|+.+.....
T Consensus       256 ~~~~~~~~~~~~~~l~~li~~~l~~d--p~~Rps~~ell~~L~~~~~~~~  303 (327)
T 1fvr_A          256 QGYRLEKPLNCDDEVYDLMRQCWREK--PYERPSFAQILVSLNRMLEERK  303 (327)
T ss_dssp             GTCCCCCCTTBCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHSSS
T ss_pred             cCCCCCCCCCCCHHHHHHHHHHccCC--hhhCcCHHHHHHHHHHHHHhhc
Confidence            44455566788899999999999999  8899999999999999987543

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=1.8e-36  Score=325.91  Aligned_cols=219  Identities=21%  Similarity=0.330  Sum_probs=178.7

Q ss_pred             ccccccccCCceEEEEEEE--CCeeEEEEEcCC-------CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEe
Q 005680          340 ERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-------GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFE  408 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-------~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~E  408 (683)
                      ...+.+|+|+||.||+|..  +|+.||||++..       ....+.+.+|+.++..++|||||++++++.+  ..|||||
T Consensus        27 ~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e  106 (351)
T 3c0i_A           27 ELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYMVFE  106 (351)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             EEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEe
Confidence            4456789999999999998  689999999851       2246789999999999999999999999865  7899999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc---EEEecC
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV---AKISGL  485 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~---~KL~DF  485 (683)
                      |++||+|.+++....      .....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++.   +||+||
T Consensus       107 ~~~g~~L~~~l~~~~------~~~~~~~~~~~~~i~~qi~~al~~lH~---~~ivHrDlkp~NIl~~~~~~~~~vkl~Df  177 (351)
T 3c0i_A          107 FMDGADLCFEIVKRA------DAGFVYSEAVASHYMRQILEALRYCHD---NNIIHRDVKPHCVLLASKENSAPVKLGGF  177 (351)
T ss_dssp             CCSSCBHHHHHHHHH------HTTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECSSSTTCCEEECCC
T ss_pred             CCCCCCHHHHHHHhc------ccCCCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCChHHeEEecCCCCCcEEEecC
Confidence            999999998885431      234468999999999999999999999   67999999999999987654   999999


Q ss_pred             CCccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCC
Q 005680          486 GLNIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGI  540 (683)
Q Consensus       486 Gla~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~  540 (683)
                      |++..                         ..++.++|||||||++|+|++|.+||.....      ..+..+.......
T Consensus       178 g~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~------~~~~~i~~~~~~~  251 (351)
T 3c0i_A          178 GVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKE------RLFEGIIKGKYKM  251 (351)
T ss_dssp             TTCEECCTTSCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHH------HHHHHHHHTCCCC
T ss_pred             cceeEecCCCeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHH------HHHHHHHcCCCCC
Confidence            99843                         2468899999999999999999999975321      2222333322211


Q ss_pred             CC---hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          541 WP---LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       541 ~p---~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .+   ..++..+.+|+.+||..|  |..|||+.++++.
T Consensus       252 ~~~~~~~~s~~~~~li~~~L~~d--P~~R~s~~e~l~h  287 (351)
T 3c0i_A          252 NPRQWSHISESAKDLVRRMLMLD--PAERITVYEALNH  287 (351)
T ss_dssp             CHHHHTTSCHHHHHHHHHHTCSS--TTTSCCHHHHHTS
T ss_pred             CccccccCCHHHHHHHHHHCCCC--hhHCcCHHHHhcC
Confidence            11   246789999999999999  8899999999863

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=1.6e-36  Score=315.83  Aligned_cols=225  Identities=14%  Similarity=0.134  Sum_probs=182.9

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEEeecCCCCch
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVFEYMPNGNLR  416 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~  416 (683)
                      .+.+|+|+||.||+|..  +|..||||++........+.+|+.++..+ +|+|++++++++.+  ..++||||+ +++|.
T Consensus        15 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~   93 (298)
T 1csn_A           15 GRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL-GPSLE   93 (298)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC-CCBHH
T ss_pred             EEEEeecCCEEEEEEEECCCCcEEEEEEeccCCccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEec-CCCHH
Confidence            45678999999999996  78999999997555566789999999999 79999999999865  789999999 99999


Q ss_pred             hhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc-----EEEecCCCccc-
Q 005680          417 DKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV-----AKISGLGLNIC-  490 (683)
Q Consensus       417 ~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~-----~KL~DFGla~~-  490 (683)
                      +++..         ....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++.     +||+|||++.. 
T Consensus        94 ~~l~~---------~~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~  161 (298)
T 1csn_A           94 DLLDL---------CGRKFSVKTVAMAAKQMLARVQSIHE---KSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFY  161 (298)
T ss_dssp             HHHHH---------TTTCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEES
T ss_pred             HHHHH---------hccCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEeccCCCCCCCeEEEEECcccccc
Confidence            99952         23469999999999999999999999   67999999999999987776     99999999742 


Q ss_pred             -------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHh----c
Q 005680          491 -------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVL----D  535 (683)
Q Consensus       491 -------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~il----d  535 (683)
                                                     ..++.++|||||||++|+|++|+.||......  .....+..+.    .
T Consensus       162 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~--~~~~~~~~~~~~~~~  239 (298)
T 1csn_A          162 RDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAA--TNKQKYERIGEKKQS  239 (298)
T ss_dssp             BCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSC--CHHHHHHHHHHHHHH
T ss_pred             ccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhcc--ccHHHHHHHHhhccC
Confidence                                           23578999999999999999999999652210  0011111111    1


Q ss_pred             CCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          536 GNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       536 ~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      ......+..+++.+.+|+.+||+.|  |..|||+.+|++.|+.+....
T Consensus       240 ~~~~~~~~~~~~~l~~li~~~l~~d--p~~RP~~~~l~~~l~~~~~~~  285 (298)
T 1csn_A          240 TPLRELCAGFPEEFYKYMHYARNLA--FDATPDYDYLQGLFSKVLERL  285 (298)
T ss_dssp             SCHHHHTTTSCHHHHHHHHHHHHCC--TTCCCCHHHHHHHHHHHHHHT
T ss_pred             ccHHHHHhhCcHHHHHHHHHHhcCC--cccCCCHHHHHHHHHHHHHhc
Confidence            1111122356789999999999999  889999999999999998654

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=1.2e-36  Score=352.95  Aligned_cols=219  Identities=22%  Similarity=0.347  Sum_probs=188.7

Q ss_pred             cccccCCceEEEEEEE----CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecCCC
Q 005680          343 RLKCAGDWTNVYRGRL----NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMPNG  413 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~----~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~gg  413 (683)
                      +.+|+|+||.||+|.+    .+..||||+++..    .....+.+|+.+|.+++|||||+++++|.+ ..+|||||+++|
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~lv~E~~~~g  454 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELG  454 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTE
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEEEccCCC
Confidence            4689999999999976    3578999999732    224789999999999999999999999966 788999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++.          ....+++..++.|+.||+.||.|||+   .+||||||||+||||+.++.+||+|||+++.   
T Consensus       455 ~L~~~l~----------~~~~l~~~~~~~i~~qi~~~L~yLH~---~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~  521 (635)
T 4fl3_A          455 PLNKYLQ----------QNRHVKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRA  521 (635)
T ss_dssp             EHHHHHH----------HCTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC
T ss_pred             CHHHHHh----------hCCCCCHHHHHHHHHHHHHHHHHHHH---CCEeCCCCChHhEEEeCCCCEEEEEcCCcccccc
Confidence            9999993          44679999999999999999999999   6799999999999999999999999998742   


Q ss_pred             -------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChh
Q 005680          491 -------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLD  544 (683)
Q Consensus       491 -------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~  544 (683)
                                               ..++.++|||||||++|||+| |+.||.....     ......+........|..
T Consensus       522 ~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~-----~~~~~~i~~~~~~~~p~~  596 (635)
T 4fl3_A          522 DENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKG-----SEVTAMLEKGERMGCPAG  596 (635)
T ss_dssp             -------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCH-----HHHHHHHHTTCCCCCCTT
T ss_pred             CccccccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH-----HHHHHHHHcCCCCCCCCC
Confidence                                     257889999999999999998 9999975322     223334444556667788


Q ss_pred             hHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHH
Q 005680          545 LAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRK  581 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~  581 (683)
                      ++..+.+||.+||+.|  |..|||+.+|++.|+.+..
T Consensus       597 ~~~~l~~li~~cl~~d--P~~RPs~~~l~~~L~~~~~  631 (635)
T 4fl3_A          597 CPREMYDLMNLCWTYD--VENRPGFAAVELRLRNYYY  631 (635)
T ss_dssp             CCHHHHHHHHHHTCSS--TTTSCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCC--HhHCcCHHHHHHHHHHHHH
Confidence            9999999999999999  8899999999999998864

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=1.2e-36  Score=333.77  Aligned_cols=218  Identities=23%  Similarity=0.332  Sum_probs=178.8

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCI  405 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~L  405 (683)
                      ++|.. .+++|+|+||.||+|..  +++.||||+++..     .....+..|..++.++ +|||||+++++|.+  ..||
T Consensus        52 ~~y~~-~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l  130 (396)
T 4dc2_A           52 QDFDL-LRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF  130 (396)
T ss_dssp             GGEEE-EEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred             hHcEE-EEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence            45543 46788999999999998  5899999998722     2234688999999887 89999999999966  7899


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecC
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGL  485 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DF  485 (683)
                      ||||++||+|.+++.          ....+++..+..|+.||+.||.|||+   .+|+||||||+||||+.+|.+||+||
T Consensus       131 V~E~~~gg~L~~~l~----------~~~~l~~~~~~~~~~qi~~aL~~LH~---~givHrDLKp~NILl~~~g~ikL~DF  197 (396)
T 4dc2_A          131 VIEYVNGGDLMFHMQ----------RQRKLPEEHARFYSAEISLALNYLHE---RGIIYRDLKLDNVLLDSEGHIKLTDY  197 (396)
T ss_dssp             EEECCTTCBHHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCC
T ss_pred             EEEcCCCCcHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCEEeccCCHHHEEECCCCCEEEeec
Confidence            999999999999994          44679999999999999999999999   67999999999999999999999999


Q ss_pred             CCccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHH---hhhhHHHHHHHhcCC
Q 005680          486 GLNIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKA---MALDQTTLMQVLDGN  537 (683)
Q Consensus       486 Gla~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~---~~~~~~~~~~ild~~  537 (683)
                      |+|+.                         ..++.++|||||||++|+|++|++||......   .......+...+...
T Consensus       198 Gla~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~  277 (396)
T 4dc2_A          198 GMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEK  277 (396)
T ss_dssp             TTCBCCCCTTCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHC
T ss_pred             ceeeecccCCCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhcc
Confidence            99853                         24788999999999999999999999642210   011122233333334


Q ss_pred             CCCCChhhHHHHHHHHHHhhhcCCCccccccH
Q 005680          538 AGIWPLDLAEELAGIALKCLSADQDANRDLRI  569 (683)
Q Consensus       538 ~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~  569 (683)
                      ...+|..++..+.+||.+||+.|  |.+||++
T Consensus       278 ~~~~p~~~s~~~~~li~~lL~~d--P~~R~~~  307 (396)
T 4dc2_A          278 QIRIPRSLSVKAASVLKSFLNKD--PKERLGC  307 (396)
T ss_dssp             CCCCCTTSCHHHHHHHHHHTCSC--TTTSTTC
T ss_pred             ccCCCCcCCHHHHHHHHHHhcCC--HhHcCCC
Confidence            55677788999999999999999  8899985

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=2.5e-36  Score=321.37  Aligned_cols=237  Identities=19%  Similarity=0.343  Sum_probs=189.1

Q ss_pred             cCccccccccccCCceEEEEEEE---------CCeeEEEEEcCCCCC---HHHHHHHHHHHHhc-CCCCccceeccccc-
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL---------NHASVAIKTLNNGLS---EEDFQAKVSFLTAV-RHPHLVAVMGCCSE-  401 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~---------~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~-  401 (683)
                      ++|.. .+.+|+|+||.||+|.+         ++..||||++.....   ...+.+|+.++.++ +||||++++++|.+ 
T Consensus        35 ~~y~~-~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~  113 (334)
T 2pvf_A           35 DKLTL-GKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  113 (334)
T ss_dssp             GGEEE-EEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             hHeEE-eeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence            44433 46778999999999986         246799999984433   35688999999999 89999999999966 


Q ss_pred             -ceeEEEeecCCCCchhhhhhcccccc------cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccc
Q 005680          402 -LKCIVFEYMPNGNLRDKLFTSQRNYK------NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL  474 (683)
Q Consensus       402 -~~~LV~Ey~~ggsL~~~L~~~~~~~~------~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILl  474 (683)
                       ..++||||+++|+|.+++........      .......+++..++.++.||+.||.|||+   .+|+||||||+|||+
T Consensus       114 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll  190 (334)
T 2pvf_A          114 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QKCIHRDLAARNVLV  190 (334)
T ss_dssp             SCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEE
T ss_pred             CceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCccceEEE
Confidence             78999999999999999964421000      00012458999999999999999999999   679999999999999


Q ss_pred             cCCCcEEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhh
Q 005680          475 DRNLVAKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALD  526 (683)
Q Consensus       475 d~~~~~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~  526 (683)
                      +.++.+||+|||++..                           ..++.++|||||||++|+|+| |.+||.....     
T Consensus       191 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~-----  265 (334)
T 2pvf_A          191 TENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV-----  265 (334)
T ss_dssp             CTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCH-----
T ss_pred             cCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCH-----
Confidence            9999999999998742                           235778999999999999999 9999865322     


Q ss_pred             HHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          527 QTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       527 ~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      ......+........+..++..+.+|+.+||+.|  |..|||+.++++.|+.+....
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d--p~~Rps~~ell~~L~~l~~~~  320 (334)
T 2pvf_A          266 EELFKLLKEGHRMDKPANCTNELYMMMRDCWHAV--PSQRPTFKQLVEDLDRILTLT  320 (334)
T ss_dssp             HHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCCccCCHHHHHHHHHHccCC--hhhCcCHHHHHHHHHHHHhcc
Confidence            1222233334445566778899999999999999  889999999999999997654

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=8.6e-37  Score=316.75  Aligned_cols=218  Identities=23%  Similarity=0.403  Sum_probs=178.3

Q ss_pred             ccccccCCceEEEEEEEC--C-------eeEEEEEcCC--CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEe
Q 005680          342 FRLKCAGDWTNVYRGRLN--H-------ASVAIKTLNN--GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFE  408 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~--g-------~~VAvK~l~~--~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~E  408 (683)
                      .+.+|+|+||.||+|.+.  +       ..||+|++..  ....+.+.+|+.++++++|||||+++++|.+  ..++|||
T Consensus        13 ~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   92 (289)
T 4fvq_A           13 NESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDENILVQE   92 (289)
T ss_dssp             EEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTCCEEEEE
T ss_pred             eeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCCCEEEEE
Confidence            456789999999999873  3       5799999863  2345789999999999999999999999965  7899999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc--------E
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV--------A  480 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~--------~  480 (683)
                      |+++|+|.+++..         ....+++..++.|+.||+.||.|||+   .+|+||||||+|||++.++.        +
T Consensus        93 ~~~~~~L~~~l~~---------~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~~~~~  160 (289)
T 4fvq_A           93 FVKFGSLDTYLKK---------NKNCINILWKLEVAKQLAAAMHFLEE---NTLIHGNVCAKNILLIREEDRKTGNPPFI  160 (289)
T ss_dssp             CCTTCBHHHHHHH---------TGGGCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEEECCBGGGTBCCEE
T ss_pred             CCCCCCHHHHHHh---------CCCCCCHHHHHHHHHHHHHHHHHHhh---CCeECCCcCcceEEEecCCccccccccee
Confidence            9999999999952         23448999999999999999999999   67999999999999998887        9


Q ss_pred             EEecCCCccc----------------------cCCCcccccccHHHHHHHHhhC-CCCchhhHHHhhhhHHHHHHHhcCC
Q 005680          481 KISGLGLNIC----------------------DQLNVRSDIRAFGTLLLHLLTG-RNWAGLVEKAMALDQTTLMQVLDGN  537 (683)
Q Consensus       481 KL~DFGla~~----------------------~~~t~ksDVwSlGviL~eLltG-~~Pf~~~~~~~~~~~~~~~~ild~~  537 (683)
                      ||+|||++..                      ..++.++|||||||++|+|++| .+||.....      ........ .
T Consensus       161 kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~------~~~~~~~~-~  233 (289)
T 4fvq_A          161 KLSDPGISITVLPKDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDS------QRKLQFYE-D  233 (289)
T ss_dssp             EECCCCSCTTTSCHHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH------HHHHHHHH-T
T ss_pred             eeccCcccccccCccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccch------HHHHHHhh-c
Confidence            9999999843                      3478899999999999999995 555543221      11111111 2


Q ss_pred             CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          538 AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       538 ~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      ....|...+..+.+|+.+||+.|  |..|||+.++++.|+.+.
T Consensus       234 ~~~~~~~~~~~l~~li~~~l~~d--p~~Rps~~~ll~~l~~l~  274 (289)
T 4fvq_A          234 RHQLPAPKAAELANLINNCMDYE--PDHRPSFRAIIRDLNSLF  274 (289)
T ss_dssp             TCCCCCCSSCTTHHHHHHHSCSS--GGGSCCHHHHHHHHHTCC
T ss_pred             cCCCCCCCCHHHHHHHHHHcCCC--hhHCcCHHHHHHHHHHhc
Confidence            23344456778999999999999  889999999999998874

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=1.6e-36  Score=313.76  Aligned_cols=219  Identities=20%  Similarity=0.308  Sum_probs=182.6

Q ss_pred             hcCccccccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeE
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCI  405 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~L  405 (683)
                      .++|.. .+.+|.|+||.||+|..  ++..||||++..     ......+.+|+.++++++||||++++++|.+  ..++
T Consensus         8 ~~~y~~-~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   86 (279)
T 3fdn_A            8 LEDFEI-GRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL   86 (279)
T ss_dssp             GGGEEE-EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred             cccEEE-eeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEE
Confidence            355544 35678999999999998  578899999862     2234678999999999999999999999976  6899


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecC
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGL  485 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DF  485 (683)
                      ||||+++|+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+||
T Consensus        87 v~e~~~~~~l~~~l~----------~~~~~~~~~~~~~~~qi~~~l~~LH~---~~i~H~dlkp~Nili~~~~~~~l~Df  153 (279)
T 3fdn_A           87 ILEYAPLGTVYRELQ----------KLSKFDEQRTATYITELANALSYCHS---KRVIHRDIKPENLLLGSAGELKIADF  153 (279)
T ss_dssp             EECCCTTEEHHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHT---TTCEECCCCGGGEEECTTSCEEECSC
T ss_pred             EEecCCCCcHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHh---CCEecccCChHhEEEcCCCCEEEEec
Confidence            999999999999994          44569999999999999999999999   67999999999999999999999999


Q ss_pred             CCccc-----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCC
Q 005680          486 GLNIC-----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWP  542 (683)
Q Consensus       486 Gla~~-----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p  542 (683)
                      |++..                       ..++.++||||||+++|+|++|.+||.....      ......+......+|
T Consensus       154 g~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~------~~~~~~~~~~~~~~~  227 (279)
T 3fdn_A          154 GWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTY------QETYKRISRVEFTFP  227 (279)
T ss_dssp             CEESCC--------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSH------HHHHHHHHHTCCCCC
T ss_pred             cccccCCcccccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcH------HHHHHHHHhCCCCCC
Confidence            98743                       2467899999999999999999999975322      111122222344566


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ..++..+.+|+.+||+.|  |..|||+.++++.
T Consensus       228 ~~~~~~~~~li~~~l~~~--p~~Rps~~e~l~h  258 (279)
T 3fdn_A          228 DFVTEGARDLISRLLKHN--PSQRPMLREVLEH  258 (279)
T ss_dssp             TTSCHHHHHHHHHHCCSS--GGGSCCHHHHHHC
T ss_pred             CcCCHHHHHHHHHHhccC--hhhCCCHHHHhhC
Confidence            678899999999999999  8899999999875

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=1.8e-36  Score=318.92  Aligned_cols=230  Identities=15%  Similarity=0.234  Sum_probs=183.6

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC--CCHHHHHHHHHHHHhcCCCCccceeccccc------ceeE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG--LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE------LKCI  405 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~--~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~------~~~L  405 (683)
                      ++|.. .+.+|+|+||.||+|..  +|+.||||++...  .....+.+|+.+++.++||||+++++++..      ..++
T Consensus        29 ~~y~~-~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l  107 (317)
T 2buj_A           29 KHYLF-IQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWL  107 (317)
T ss_dssp             EEEEE-EEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEE
T ss_pred             eEEEE-EEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEE
Confidence            34443 46678999999999997  6899999998632  234678999999999999999999999852      6789


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecC
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGL  485 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DF  485 (683)
                      ||||+++|+|.+++....      .....+++..++.|+.||+.||.|||+   .+|+||||||+|||++.++.+||+||
T Consensus       108 v~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~dlkp~NIl~~~~~~~kl~df  178 (317)
T 2buj_A          108 LLPFFKRGTLWNEIERLK------DKGNFLTEDQILWLLLGICRGLEAIHA---KGYAHRDLKPTNILLGDEGQPVLMDL  178 (317)
T ss_dssp             EEECCTTCBHHHHHHHHH------TTTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCC
T ss_pred             EEEeCCCCcHHHHHHHHH------hcCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEcCCCCEEEEec
Confidence            999999999999996432      235679999999999999999999999   67999999999999999999999999


Q ss_pred             CCccc-------------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHH
Q 005680          486 GLNIC-------------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQT  528 (683)
Q Consensus       486 Gla~~-------------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~  528 (683)
                      |++..                                     ..++.++|||||||++|+|++|+.||......   ...
T Consensus       179 g~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~---~~~  255 (317)
T 2buj_A          179 GSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQK---GDS  255 (317)
T ss_dssp             SSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHT---TSC
T ss_pred             CcchhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcc---cch
Confidence            97531                                     01577999999999999999999999753221   111


Q ss_pred             HHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          529 TLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       529 ~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      ....+......+.+..++..+.+|+.+||+.|  |..|||+.++++.|+.+.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d--p~~Rps~~~ll~~L~~~~  305 (317)
T 2buj_A          256 VALAVQNQLSIPQSPRHSSALWQLLNSMMTVD--PHQRPHIPLLLSQLEALQ  305 (317)
T ss_dssp             HHHHHHCC--CCCCTTSCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHTC
T ss_pred             hhHHhhccCCCCccccCCHHHHHHHHHHhhcC--hhhCCCHHHHHHHhhhcC
Confidence            11122222233344567889999999999999  889999999999998874

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.8e-36  Score=316.85  Aligned_cols=217  Identities=17%  Similarity=0.214  Sum_probs=172.4

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC----------------------------CHHHHHHHHHHHH
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----------------------------SEEDFQAKVSFLT  385 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----------------------------~~~~~~~Ev~iL~  385 (683)
                      ++|.. .+.+|+|+||.||+|..  +|+.||||++....                            ..+.+.+|+.+++
T Consensus        13 ~~y~~-~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~   91 (298)
T 2zv2_A           13 NQYTL-KDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK   91 (298)
T ss_dssp             TTEEE-EEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred             cceEE-EeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence            44543 35678999999999998  68999999986321                            1256889999999


Q ss_pred             hcCCCCccceeccccc----ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCc
Q 005680          386 AVRHPHLVAVMGCCSE----LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP  461 (683)
Q Consensus       386 ~l~HpnIV~l~g~~~~----~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~  461 (683)
                      +++||||+++++++.+    ..++||||+++|+|.+++           ....+++..+..++.||+.||.|||+   .+
T Consensus        92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~-----------~~~~~~~~~~~~~~~qi~~~l~~lH~---~~  157 (298)
T 2zv2_A           92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVP-----------TLKPLSEDQARFYFQDLIKGIEYLHY---QK  157 (298)
T ss_dssp             TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSS-----------CSSCCCHHHHHHHHHHHHHHHHHHHH---TT
T ss_pred             hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHh-----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CC
Confidence            9999999999999854    679999999999999876           33579999999999999999999999   67


Q ss_pred             EEeccCCCCcccccCCCcEEEecCCCccc-------------------------cC---CCcccccccHHHHHHHHhhCC
Q 005680          462 IVHGSLTPSSILLDRNLVAKISGLGLNIC-------------------------DQ---LNVRSDIRAFGTLLLHLLTGR  513 (683)
Q Consensus       462 IiHrDLKP~NILld~~~~~KL~DFGla~~-------------------------~~---~t~ksDVwSlGviL~eLltG~  513 (683)
                      |+||||||+|||++.++.+||+|||++..                         ..   ++.++|||||||++|+|++|+
T Consensus       158 ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~  237 (298)
T 2zv2_A          158 IIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQ  237 (298)
T ss_dssp             EECCCCCGGGEEECTTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSS
T ss_pred             eeccCCCHHHEEECCCCCEEEecCCCccccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCC
Confidence            99999999999999999999999998743                         01   256789999999999999999


Q ss_pred             CCchhhHHHhhhhHHHHHHHhcC-CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          514 NWAGLVEKAMALDQTTLMQVLDG-NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       514 ~Pf~~~~~~~~~~~~~~~~ild~-~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +||......     .....+... ...+.+..+++.+.+|+.+||+.|  |..|||+.++++
T Consensus       238 ~pf~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d--p~~R~s~~e~l~  292 (298)
T 2zv2_A          238 CPFMDERIM-----CLHSKIKSQALEFPDQPDIAEDLKDLITRMLDKN--PESRIVVPEIKL  292 (298)
T ss_dssp             CSSCCSSHH-----HHHHHHHHCCCCCCSSSCCCHHHHHHHHHHTCSC--TTTSCCHHHHTT
T ss_pred             CCCCCccHH-----HHHHHHhcccCCCCCccccCHHHHHHHHHHhhcC--hhhCCCHHHHhc
Confidence            999643221     111122221 111223467889999999999999  889999999865

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=4.9e-36  Score=318.07  Aligned_cols=230  Identities=22%  Similarity=0.401  Sum_probs=187.8

Q ss_pred             ccccccccCCceEEEEEEE------CCeeEEEEEcCCCCC--HHHHHHHHHHHHhcCCCCccceeccccc----ceeEEE
Q 005680          340 ERFRLKCAGDWTNVYRGRL------NHASVAIKTLNNGLS--EEDFQAKVSFLTAVRHPHLVAVMGCCSE----LKCIVF  407 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~------~g~~VAvK~l~~~~~--~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----~~~LV~  407 (683)
                      ...+.+|.|+||.||+|.+      +|..||||++.....  ...+.+|+.++++++||||+++++++..    ..++||
T Consensus        44 ~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~  123 (326)
T 2w1i_A           44 KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIM  123 (326)
T ss_dssp             EEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CCEEEE
T ss_pred             eeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceEEEE
Confidence            3346778999999999984      578999999974332  3578999999999999999999998854    579999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCC
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL  487 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGl  487 (683)
                      ||+++|+|.+++..         ....+++..++.++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+
T Consensus       124 e~~~~~~L~~~l~~---------~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dikp~NIli~~~~~~kL~Dfg~  191 (326)
T 2w1i_A          124 EYLPYGSLRDYLQK---------HKERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFGL  191 (326)
T ss_dssp             CCCTTCBHHHHHHH---------STTSSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEETTEEEECCCTT
T ss_pred             ECCCCCCHHHHHHh---------cccCCCHHHHHHHHHHHHHHHHHHHh---CCEeccCCCcceEEEcCCCcEEEecCcc
Confidence            99999999999952         23469999999999999999999999   6799999999999999999999999998


Q ss_pred             ccc----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhh----------hhHHH
Q 005680          488 NIC----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMA----------LDQTT  529 (683)
Q Consensus       488 a~~----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~----------~~~~~  529 (683)
                      +..                            ..++.++|||||||++|+|+||..|+........          .....
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (326)
T 2w1i_A          192 TKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFH  271 (326)
T ss_dssp             CEECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHH
T ss_pred             hhhccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHH
Confidence            743                            1256789999999999999999999864321100          00011


Q ss_pred             HHHHh-cCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          530 LMQVL-DGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       530 ~~~il-d~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      +...+ .......|..++..+.+|+.+||+.|  |..|||+.+|++.|+.+++..
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~d--P~~Rps~~el~~~L~~l~~~l  324 (326)
T 2w1i_A          272 LIELLKNNGRLPRPDGCPDEIYMIMTECWNNN--VNQRPSFRDLALRVDQIRDQM  324 (326)
T ss_dssp             HHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSS--GGGSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcCCCCCCCCcccHHHHHHHHHHcCCC--hhhCcCHHHHHHHHHHHHHHh
Confidence            22222 23344566778899999999999999  889999999999999998643

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=1.3e-36  Score=319.22  Aligned_cols=248  Identities=21%  Similarity=0.336  Sum_probs=195.8

Q ss_pred             ccCHHHHHHhhcCccccccccccCCceEEEEEEE-------CCeeEEEEEcCCCCC---HHHHHHHHHHHHhc-CCCCcc
Q 005680          325 EYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRL-------NHASVAIKTLNNGLS---EEDFQAKVSFLTAV-RHPHLV  393 (683)
Q Consensus       325 ~~s~~ei~~at~~F~~~~~liG~G~fG~Vykg~~-------~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l-~HpnIV  393 (683)
                      .+...++....++|... +.+|.|+||.||+|.+       +++.||||++.....   ...+.+|+.++.++ +||||+
T Consensus        16 ~~~~~~~~~~~~~y~~~-~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv   94 (316)
T 2xir_A           16 PYDASKWEFPRDRLKLG-KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVV   94 (316)
T ss_dssp             CCCHHHHBCCGGGEEEE-EEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred             cccccceecchhheeee-eEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCee
Confidence            34555555556666544 5678999999999985       358899999985443   24688999999999 799999


Q ss_pred             ceeccccc---ceeEEEeecCCCCchhhhhhccccccc------ccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEe
Q 005680          394 AVMGCCSE---LKCIVFEYMPNGNLRDKLFTSQRNYKN------CSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVH  464 (683)
Q Consensus       394 ~l~g~~~~---~~~LV~Ey~~ggsL~~~L~~~~~~~~~------~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiH  464 (683)
                      +++++|.+   ..++||||+++|+|.+++.........      ......+++..++.++.||+.||.|||+   .+|+|
T Consensus        95 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~i~H  171 (316)
T 2xir_A           95 NLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIH  171 (316)
T ss_dssp             CEEEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHH---TTCCC
T ss_pred             eEEEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHh---CCccc
Confidence            99999865   489999999999999999644210000      0012238999999999999999999999   67999


Q ss_pred             ccCCCCcccccCCCcEEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCc
Q 005680          465 GSLTPSSILLDRNLVAKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWA  516 (683)
Q Consensus       465 rDLKP~NILld~~~~~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf  516 (683)
                      |||||+|||++.++.+||+|||++..                           ..++.++|||||||++|+|+| |.+||
T Consensus       172 ~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~  251 (316)
T 2xir_A          172 RDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPY  251 (316)
T ss_dssp             SCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred             ccCccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999998852                           246789999999999999998 99999


Q ss_pred             hhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          517 GLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       517 ~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      .....    .......+........+..+++.+.+++.+||+.|  |..|||+.++++.|+.+...
T Consensus       252 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d--p~~Rps~~ell~~L~~~~~~  311 (316)
T 2xir_A          252 PGVKI----DEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGE--PSQRPTFSELVEHLGNLLQA  311 (316)
T ss_dssp             TTCCC----SHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHH
T ss_pred             cccch----hHHHHHHhccCccCCCCCCCCHHHHHHHHHHcCCC--hhhCcCHHHHHHHHHHHHhh
Confidence            64321    12222233334445556678899999999999999  88999999999999998754

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=2e-36  Score=325.56  Aligned_cols=220  Identities=19%  Similarity=0.268  Sum_probs=172.1

Q ss_pred             hcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeec
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYM  410 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~  410 (683)
                      .+.|. ..+.+|+|+||.||+|.+  +++.||||++......+.+.+|+.++.+++|||||+++++|.+  ..++||||+
T Consensus        52 ~~~y~-~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  130 (349)
T 2w4o_A           52 SDFFE-VESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLELV  130 (349)
T ss_dssp             GGTEE-EEEEEEECSSEEEEEEEETTTCCEEEEEEEEC----------CHHHHHCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             cCcEE-EeeEEeeCCCEEEEEEEECCCCcEEEEEEeccchhHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEeC
Confidence            34444 346778999999999999  5789999999866566778999999999999999999999966  789999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC---CCcEEEecCCC
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR---NLVAKISGLGL  487 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~---~~~~KL~DFGl  487 (683)
                      ++|+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.   ++.+||+|||+
T Consensus       131 ~~~~L~~~l~----------~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~  197 (349)
T 2w4o_A          131 TGGELFDRIV----------EKGYYSERDAADAVKQILEAVAYLHE---NGIVHRDLKPENLLYATPAPDAPLKIADFGL  197 (349)
T ss_dssp             CSCBHHHHHT----------TCSSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEESSSSTTCCEEECCCC-
T ss_pred             CCCCHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCcccEEEecCCCCCCEEEccCcc
Confidence            9999999993          44569999999999999999999999   67999999999999975   89999999999


Q ss_pred             ccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCC---CCC
Q 005680          488 NIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGN---AGI  540 (683)
Q Consensus       488 a~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~---~~~  540 (683)
                      ++.                        ..++.++|||||||++|+|++|..||.....    ....+..+....   ...
T Consensus       198 a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~----~~~~~~~i~~~~~~~~~~  273 (349)
T 2w4o_A          198 SKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERG----DQFMFRRILNCEYYFISP  273 (349)
T ss_dssp             ---------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTC----HHHHHHHHHTTCCCCCTT
T ss_pred             ccccCcccccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcc----cHHHHHHHHhCCCccCCc
Confidence            753                        2478899999999999999999999864221    111223333322   223


Q ss_pred             CChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          541 WPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       541 ~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +...++..+.+|+.+||..|  |..|||+.++++
T Consensus       274 ~~~~~~~~~~~li~~~L~~d--P~~Rpt~~e~l~  305 (349)
T 2w4o_A          274 WWDEVSLNAKDLVRKLIVLD--PKKRLTTFQALQ  305 (349)
T ss_dssp             TTTTSCHHHHHHHHTTSCSS--GGGSCCHHHHHH
T ss_pred             hhhhCCHHHHHHHHHHccCC--hhhCcCHHHHhc
Confidence            33567889999999999999  889999998875

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=1.9e-36  Score=327.28  Aligned_cols=223  Identities=19%  Similarity=0.243  Sum_probs=176.9

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCC-CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeec
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYM  410 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~  410 (683)
                      ++|. ..+.+|+|+||.||++..  +|+.||||++.. ......+.+|+.+++.++|||||++++++.+  ..++||||+
T Consensus        20 ~~y~-~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~   98 (361)
T 3uc3_A           20 DRYD-FVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEYA   98 (361)
T ss_dssp             TTEE-EEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             CcEE-EEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEeC
Confidence            3443 346778999999999998  689999999973 3345778999999999999999999999965  789999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc--EEEecCCCc
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV--AKISGLGLN  488 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~--~KL~DFGla  488 (683)
                      ++|+|.+++.          ....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++.  +||+|||++
T Consensus        99 ~~~~L~~~l~----------~~~~~~~~~~~~i~~ql~~~L~~LH~---~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a  165 (361)
T 3uc3_A           99 SGGELYERIC----------NAGRFSEDEARFFFQQLLSGVSYCHS---MQICHRDLKLENTLLDGSPAPRLKICDFGYS  165 (361)
T ss_dssp             CSCBHHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHH---TTCCSCCCCGGGEEECSSSSCCEEECCCCCC
T ss_pred             CCCCHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEcCCCCceEEEeecCcc
Confidence            9999999994          44569999999999999999999999   67999999999999987765  999999998


Q ss_pred             cc------------------------cCC-CcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCC-CCCCC
Q 005680          489 IC------------------------DQL-NVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGN-AGIWP  542 (683)
Q Consensus       489 ~~------------------------~~~-t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~-~~~~p  542 (683)
                      +.                        ..+ +.++|||||||++|+|++|++||....... .....+..+.... ..+.+
T Consensus       166 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~-~~~~~~~~~~~~~~~~~~~  244 (361)
T 3uc3_A          166 KSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPR-DYRKTIQRILSVKYSIPDD  244 (361)
T ss_dssp             ---------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CC-CHHHHHHHHHTTCCCCCTT
T ss_pred             ccccccCCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHH-HHHHHHHHHhcCCCCCCCc
Confidence            53                        123 344899999999999999999997533211 1112222333321 11222


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ..+++.+.+|+.+||+.|  |..|||+.++++.
T Consensus       245 ~~~s~~~~~li~~~L~~d--P~~Rps~~ell~h  275 (361)
T 3uc3_A          245 IRISPECCHLISRIFVAD--PATRISIPEIKTH  275 (361)
T ss_dssp             SCCCHHHHHHHHHHSCSC--TTTSCCHHHHHTS
T ss_pred             CCCCHHHHHHHHHHccCC--hhHCcCHHHHHhC
Confidence            356889999999999999  8899999999875

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=1.3e-36  Score=323.16  Aligned_cols=230  Identities=15%  Similarity=0.156  Sum_probs=183.1

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEEeec
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVFEYM  410 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~Ey~  410 (683)
                      ++|.. .+.+|.|+||.||+|..  +|+.||||++........+.+|+.++.++ +||||+++++++.+  ..++||||+
T Consensus         9 ~~y~~-~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~   87 (330)
T 2izr_A            9 PNFRV-GKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELL   87 (330)
T ss_dssp             TTEEE-EEECCC-CTTSEEEEEETTTTEEEEEEEEETTCSSCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEECC
T ss_pred             CCeEE-EEEeeccCCceEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEeC
Confidence            34543 46678999999999996  78999999997555556789999999999 99999999999865  679999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc-----EEEecC
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV-----AKISGL  485 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~-----~KL~DF  485 (683)
                       +|+|.+++..         ....+++..++.|+.||+.||.|||+   .+|+||||||+|||++.++.     +||+||
T Consensus        88 -~~~L~~~~~~---------~~~~~~~~~~~~i~~qi~~~l~~LH~---~~iiHrDlkp~Nill~~~~~~~~~~~kl~DF  154 (330)
T 2izr_A           88 -GPSLEDLFDL---------CDRTFSLKTVLMIAIQLISRMEYVHS---KNLIYRDVKPENFLIGRPGNKTQQVIHIIDF  154 (330)
T ss_dssp             -CCBHHHHHHH---------TTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECCGGGTCTTSEEECCC
T ss_pred             -CCCHHHHHHH---------cCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHeeeccCCCCCCceEEEEEc
Confidence             9999999952         24579999999999999999999999   67999999999999999887     999999


Q ss_pred             CCccc--------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHH
Q 005680          486 GLNIC--------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQV  533 (683)
Q Consensus       486 Gla~~--------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~i  533 (683)
                      |+++.                                ..++.++|||||||++|+|++|++||......  .....+..+
T Consensus       155 g~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~--~~~~~~~~i  232 (330)
T 2izr_A          155 ALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD--TLKERYQKI  232 (330)
T ss_dssp             TTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCS--SHHHHHHHH
T ss_pred             ccceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccc--cHHHHHHHH
Confidence            99852                                23577999999999999999999999753210  001111111


Q ss_pred             hcCCC----CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhcc
Q 005680          534 LDGNA----GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKAD  584 (683)
Q Consensus       534 ld~~~----~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~~  584 (683)
                      .....    ......++ .+.+|+..||+.|  |..||++.+|++.|+.+.....
T Consensus       233 ~~~~~~~~~~~~~~~~p-~~~~li~~~l~~~--p~~RP~~~~l~~~l~~~~~~~~  284 (330)
T 2izr_A          233 GDTKRATPIEVLCENFP-EMATYLRYVRRLD--FFEKPDYDYLRKLFTDLFDRKG  284 (330)
T ss_dssp             HHHHHHSCHHHHTTTCH-HHHHHHHHHHHCC--TTCCCCHHHHHHHHHHHHHHTT
T ss_pred             HhhhccCCHHHHhccCh-HHHHHHHHHHhCC--CCCCCCHHHHHHHHHHHHHHcC
Confidence            11100    00011245 8999999999999  8899999999999998876543

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=1.8e-36  Score=322.42  Aligned_cols=216  Identities=17%  Similarity=0.308  Sum_probs=174.5

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcC-CCCccceeccccc--ceeEEEeecCCCCch
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVR-HPHLVAVMGCCSE--LKCIVFEYMPNGNLR  416 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~-HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~  416 (683)
                      .+.+|+|+||.||+|..  +|..||||++... ....+.+|+.++..+. |||||++++++.+  ..||||||++||+|.
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~   94 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR-MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGELF   94 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG-GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBHH
T ss_pred             CCccccCCCeEEEEEEECCCCCEEEEEEEChh-hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCcHH
Confidence            46789999999999998  5899999999633 4567889999999997 9999999999976  689999999999999


Q ss_pred             hhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCC---cEEEecCCCccc---
Q 005680          417 DKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL---VAKISGLGLNIC---  490 (683)
Q Consensus       417 ~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~---~~KL~DFGla~~---  490 (683)
                      +++.          ....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++   .+||+|||+++.   
T Consensus        95 ~~l~----------~~~~~~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~  161 (325)
T 3kn6_A           95 ERIK----------KKKHFSETEASYIMRKLVSAVSHMHD---VGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPP  161 (325)
T ss_dssp             HHHH----------HCSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC
T ss_pred             HHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCCeecCCCHHHEEEecCCCcccEEEeccccceecCC
Confidence            9993          45679999999999999999999999   6799999999999997665   899999999853   


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHh--hhhHHHHHHHhcCCCCCCC----
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAM--ALDQTTLMQVLDGNAGIWP----  542 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~--~~~~~~~~~ild~~~~~~p----  542 (683)
                                            ..++.++|||||||++|+|++|++||.......  ......+..+..+. ..++    
T Consensus       162 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~  240 (325)
T 3kn6_A          162 DNQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGD-FSFEGEAW  240 (325)
T ss_dssp             ----------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTC-CCCCSHHH
T ss_pred             CCCcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCC-CCCCcccc
Confidence                                  246789999999999999999999997533211  01112223333322 2222    


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ..+++.+.+|+.+||..|  |..|||+.+++.
T Consensus       241 ~~~s~~~~~li~~~L~~d--P~~Rpt~~ell~  270 (325)
T 3kn6_A          241 KNVSQEAKDLIQGLLTVD--PNKRLKMSGLRY  270 (325)
T ss_dssp             HTSCHHHHHHHHHHHCCC--TTTCCCTTTSTT
T ss_pred             cCCCHHHHHHHHHHCCCC--hhHCCCHHHHhc
Confidence            246889999999999999  889999999864

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=2.9e-36  Score=319.89  Aligned_cols=238  Identities=21%  Similarity=0.309  Sum_probs=188.2

Q ss_pred             hcCccccccccccCCceEEEEEEEC--C-----eeEEEEEcCCCCC---HHHHHHHHHHHHhc-CCCCccceeccccc--
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRLN--H-----ASVAIKTLNNGLS---EEDFQAKVSFLTAV-RHPHLVAVMGCCSE--  401 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~~--g-----~~VAvK~l~~~~~---~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--  401 (683)
                      .++|.. .+.+|.|+||.||+|...  +     ..||||.+.....   ...+.+|+.++.++ +||||++++++|.+  
T Consensus        45 ~~~~~~-~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~  123 (333)
T 2i1m_A           45 RNNLQF-GKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGG  123 (333)
T ss_dssp             TTSEEE-EEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             HHHcee-eeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCC
Confidence            345544 367789999999999983  2     4799999974432   35688999999999 89999999999966  


Q ss_pred             ceeEEEeecCCCCchhhhhhccccccc----ccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC
Q 005680          402 LKCIVFEYMPNGNLRDKLFTSQRNYKN----CSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN  477 (683)
Q Consensus       402 ~~~LV~Ey~~ggsL~~~L~~~~~~~~~----~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~  477 (683)
                      ..++||||+++|+|.+++.........    ......+++..++.++.||+.||.|||+   .+|+||||||+|||++.+
T Consensus       124 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~NIl~~~~  200 (333)
T 2i1m_A          124 PVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLAS---KNCIHRDVAARNVLLTNG  200 (333)
T ss_dssp             SCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGCEEEGG
T ss_pred             ceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhc---CCcccCCcccceEEECCC
Confidence            789999999999999999644210000    0013468999999999999999999999   679999999999999999


Q ss_pred             CcEEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHH
Q 005680          478 LVAKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTT  529 (683)
Q Consensus       478 ~~~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~  529 (683)
                      +.+||+|||++..                           ..++.++|||||||++|+|+| |.+||.....    ....
T Consensus       201 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~----~~~~  276 (333)
T 2i1m_A          201 HVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILV----NSKF  276 (333)
T ss_dssp             GEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCS----SHHH
T ss_pred             CeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccch----hHHH
Confidence            9999999999852                           246789999999999999999 9999864221    1111


Q ss_pred             HHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          530 LMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       530 ~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      ...+........|..++..+.+|+.+||+.|  |..|||+.+|++.|+.+...
T Consensus       277 ~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~--p~~Rps~~~l~~~L~~~~~~  327 (333)
T 2i1m_A          277 YKLVKDGYQMAQPAFAPKNIYSIMQACWALE--PTHRPTFQQICSFLQEQAQE  327 (333)
T ss_dssp             HHHHHHTCCCCCCTTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCCCCCCCHHHHHHHHHHhccC--hhhCcCHHHHHHHHHHHHHh
Confidence            1122223344456667889999999999999  88999999999999988654

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=2.7e-36  Score=321.16  Aligned_cols=217  Identities=23%  Similarity=0.304  Sum_probs=173.7

Q ss_pred             cCccccccccccCCceEEEEEEE-----CCeeEEEEEcCCC------CCHHHHHHHHHHHHhcCCCCccceeccccc--c
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL-----NHASVAIKTLNNG------LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--L  402 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~-----~g~~VAvK~l~~~------~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~  402 (683)
                      ++|.. .+++|+|+||.||+|..     +|..||||++...      .....+.+|+.+|..++|||||++++++.+  .
T Consensus        17 ~~y~~-~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~   95 (327)
T 3a62_A           17 ECFEL-LRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK   95 (327)
T ss_dssp             GGEEE-EEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred             HHeEE-EEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence            34443 46778999999999987     5789999999732      223567889999999999999999999965  7


Q ss_pred             eeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEE
Q 005680          403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKI  482 (683)
Q Consensus       403 ~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL  482 (683)
                      .||||||++||+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||
T Consensus        96 ~~lv~e~~~~~~L~~~l~----------~~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~Dlkp~Nill~~~~~~kl  162 (327)
T 3a62_A           96 LYLILEYLSGGELFMQLE----------REGIFMEDTACFYLAEISMALGHLHQ---KGIIYRDLKPENIMLNHQGHVKL  162 (327)
T ss_dssp             EEEEEECCTTEEHHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCTTTEEECTTSCEEE
T ss_pred             EEEEEeCCCCCcHHHHHH----------hCCCCCHHHHHHHHHHHHHHHHHHHh---CCEEcccCCHHHeEECCCCcEEE
Confidence            899999999999999994          44568999999999999999999999   67999999999999999999999


Q ss_pred             ecCCCccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCC
Q 005680          483 SGLGLNIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGN  537 (683)
Q Consensus       483 ~DFGla~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~  537 (683)
                      +|||+++.                         ..++.++|||||||++|+|++|++||.....     ...+..++. .
T Consensus       163 ~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-----~~~~~~i~~-~  236 (327)
T 3a62_A          163 TDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENR-----KKTIDKILK-C  236 (327)
T ss_dssp             CCCSCC----------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-----HHHHHHHHH-T
T ss_pred             EeCCcccccccCCccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCH-----HHHHHHHHh-C
Confidence            99998752                         2467899999999999999999999965322     122223333 2


Q ss_pred             CCCCChhhHHHHHHHHHHhhhcCCCccccc-----cHHHHHH
Q 005680          538 AGIWPLDLAEELAGIALKCLSADQDANRDL-----RIAGVMK  574 (683)
Q Consensus       538 ~~~~p~~~~~~l~~Li~~CL~~dP~p~~RP-----s~~eVl~  574 (683)
                      ...+|..++..+.+|+.+||..|  |..||     ++.+++.
T Consensus       237 ~~~~p~~~~~~~~~li~~~L~~d--p~~R~~~~~~~~~e~l~  276 (327)
T 3a62_A          237 KLNLPPYLTQEARDLLKKLLKRN--AASRLGAGPGDAGEVQA  276 (327)
T ss_dssp             CCCCCTTSCHHHHHHHHHHSCSC--GGGSTTSSTTTHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHhcC--HhhccCCCCCCHHHHHc
Confidence            34566678899999999999999  88999     5556544

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=2e-36  Score=325.46  Aligned_cols=218  Identities=24%  Similarity=0.343  Sum_probs=177.6

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC-----CHHHHHHHHHHHHhc-CCCCccceeccccc--ceeE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-----SEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCI  405 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-----~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~L  405 (683)
                      ++|.. .+++|+|+||.||+|..  +|+.||||++....     ....+.+|+.++.++ +|||||++++++.+  ..|+
T Consensus         9 ~~y~~-~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l   87 (345)
T 3a8x_A            9 QDFDL-LRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF   87 (345)
T ss_dssp             GGEEE-EEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             hheEE-EEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEE
Confidence            34543 46778999999999998  58999999997321     234578899999988 89999999999966  7899


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecC
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGL  485 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DF  485 (683)
                      ||||++||+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.+|.+||+||
T Consensus        88 v~e~~~gg~L~~~l~----------~~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~~kL~DF  154 (345)
T 3a8x_A           88 VIEYVNGGDLMFHMQ----------RQRKLPEEHARFYSAEISLALNYLHE---RGIIYRDLKLDNVLLDSEGHIKLTDY  154 (345)
T ss_dssp             EECCCCSCBHHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCG
T ss_pred             EEeCCCCCcHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCHHHEEECCCCCEEEEec
Confidence            999999999999994          44579999999999999999999999   67999999999999999999999999


Q ss_pred             CCccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHH---hhhhHHHHHHHhcCC
Q 005680          486 GLNIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKA---MALDQTTLMQVLDGN  537 (683)
Q Consensus       486 Gla~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~---~~~~~~~~~~ild~~  537 (683)
                      |+++.                         ..++.++|||||||++|+|++|++||......   .......+...+...
T Consensus       155 G~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~  234 (345)
T 3a8x_A          155 GMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEK  234 (345)
T ss_dssp             GGCBCSCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHC
T ss_pred             cccccccCCCCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcC
Confidence            99853                         24678999999999999999999999642110   001112222222233


Q ss_pred             CCCCChhhHHHHHHHHHHhhhcCCCccccccH
Q 005680          538 AGIWPLDLAEELAGIALKCLSADQDANRDLRI  569 (683)
Q Consensus       538 ~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~  569 (683)
                      ...+|..++..+.+|+.+||+.|  |..||++
T Consensus       235 ~~~~p~~~s~~~~~li~~lL~~d--P~~R~~~  264 (345)
T 3a8x_A          235 QIRIPRSLSVKAASVLKSFLNKD--PKERLGC  264 (345)
T ss_dssp             CCCCCTTSCHHHHHHHHHHTCSS--TTTSTTC
T ss_pred             CCCCCCCCCHHHHHHHHHHhcCC--HhHCCCC
Confidence            45567788999999999999999  8899995

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=2.5e-36  Score=326.73  Aligned_cols=219  Identities=20%  Similarity=0.270  Sum_probs=178.3

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVF  407 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~  407 (683)
                      ++|.. .+.+|.|+||.||+|..  +|..||||++....    ....+.+|+.+++.++|||||++++++.+  ..|+||
T Consensus        29 ~~y~~-~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~  107 (362)
T 2bdw_A           29 DNYDV-KEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF  107 (362)
T ss_dssp             HHEEE-EEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCeEE-eeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            44543 35678999999999998  58999999997322    23568899999999999999999999966  789999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC---CcEEEec
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN---LVAKISG  484 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~---~~~KL~D  484 (683)
                      ||++||+|.+++          .....+++..+..++.||+.||.|||+   .+|+||||||+|||++.+   +.+||+|
T Consensus       108 e~~~gg~L~~~l----------~~~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~Dlkp~NIll~~~~~~~~~kl~D  174 (362)
T 2bdw_A          108 DLVTGGELFEDI----------VAREFYSEADASHCIQQILESIAYCHS---NGIVHRNLKPENLLLASKAKGAAVKLAD  174 (362)
T ss_dssp             CCCCSCBHHHHH----------TTCSCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEESCSSTTCCEEECC
T ss_pred             ecCCCCCHHHHH----------HHcCCCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCchHHEEEecCCCCCCEEEee
Confidence            999999999999          345679999999999999999999999   679999999999999865   4599999


Q ss_pred             CCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCC-
Q 005680          485 LGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG-  539 (683)
Q Consensus       485 FGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~-  539 (683)
                      ||++..                        ..++.++|||||||++|+|++|.+||.....     ......+...... 
T Consensus       175 fG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~-----~~~~~~i~~~~~~~  249 (362)
T 2bdw_A          175 FGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ-----HRLYAQIKAGAYDY  249 (362)
T ss_dssp             CTTCBCCTTCCSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHTCCCC
T ss_pred             cCcceEecCCcccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH-----HHHHHHHHhCCCCC
Confidence            999853                        2478899999999999999999999964322     1222223222111 


Q ss_pred             C--CChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          540 I--WPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       540 ~--~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .  ....+++.+.+|+.+||..|  |..|||+.++++.
T Consensus       250 ~~~~~~~~~~~~~~li~~~L~~d--P~~R~t~~e~l~h  285 (362)
T 2bdw_A          250 PSPEWDTVTPEAKSLIDSMLTVN--PKKRITADQALKV  285 (362)
T ss_dssp             CTTGGGGSCHHHHHHHHHHSCSS--GGGSCCHHHHTTS
T ss_pred             CcccccCCCHHHHHHHHHHcCCC--hhhCcCHHHHhcC
Confidence            1  11357889999999999999  8899999998864

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=4.2e-36  Score=312.56  Aligned_cols=223  Identities=22%  Similarity=0.280  Sum_probs=178.0

Q ss_pred             CccccccccccCCceEEEEEEE--CCeeEEEEEcCC---CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEee
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN---GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEY  409 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~---~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey  409 (683)
                      .|.. .+.+|+|+||.||+|..  +|..||+|++..   ......+.+|+.++++++||||+++++++.+  ..++||||
T Consensus        23 ~y~~-~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  101 (285)
T 3is5_A           23 LFIF-KRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMET  101 (285)
T ss_dssp             HEEE-EEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             heee-cceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEe
Confidence            3433 45678999999999998  588999999872   3345789999999999999999999999976  78999999


Q ss_pred             cCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccc---cCCCcEEEecCC
Q 005680          410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL---DRNLVAKISGLG  486 (683)
Q Consensus       410 ~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILl---d~~~~~KL~DFG  486 (683)
                      +++|+|.+++....      .....+++..+..|+.||+.||.|||+   .+|+||||||+|||+   +.++.+||+|||
T Consensus       102 ~~~~~L~~~l~~~~------~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg  172 (285)
T 3is5_A          102 CEGGELLERIVSAQ------ARGKALSEGYVAELMKQMMNALAYFHS---QHVVHKDLKPENILFQDTSPHSPIKIIDFG  172 (285)
T ss_dssp             CSCCBHHHHHHHHH------HHTCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEESSSSTTCCEEECCCC
T ss_pred             CCCCcHHHHHHhhh------hcccCCCHHHHHHHHHHHHHHHHHHHh---CCEEECCCCHHHEEEecCCCCCCEEEEeee
Confidence            99999999995432      234679999999999999999999999   679999999999999   456889999999


Q ss_pred             Cccc-----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCCh
Q 005680          487 LNIC-----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPL  543 (683)
Q Consensus       487 la~~-----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~  543 (683)
                      ++..                       ..++.++|||||||++|+|++|+.||.......   .................
T Consensus       173 ~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~---~~~~~~~~~~~~~~~~~  249 (285)
T 3is5_A          173 LAELFKSDEHSTNAAGTALYMAPEVFKRDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEE---VQQKATYKEPNYAVECR  249 (285)
T ss_dssp             CCCC----------CTTGGGCCHHHHTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHHHHHHCCCCCCC--C
T ss_pred             cceecCCcccCcCcccccCcCChHHhccCCCcccCeehHHHHHHHHHhCCCCCCCCCHHH---HHhhhccCCcccccccC
Confidence            9853                       346789999999999999999999996532210   00001111111111122


Q ss_pred             hhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          544 DLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       544 ~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .+++.+.+|+.+||+.|  |..|||+.++++
T Consensus       250 ~~~~~~~~li~~~L~~d--P~~Rps~~e~l~  278 (285)
T 3is5_A          250 PLTPQAVDLLKQMLTKD--PERRPSAAQVLH  278 (285)
T ss_dssp             CCCHHHHHHHHHHTCSC--TTTSCCHHHHHT
T ss_pred             cCCHHHHHHHHHHccCC--hhhCcCHHHHhc
Confidence            36788999999999999  889999999875

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=2.6e-36  Score=325.97  Aligned_cols=213  Identities=20%  Similarity=0.303  Sum_probs=178.8

Q ss_pred             hcCccccccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhc-CCCCccceeccccc--cee
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKC  404 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~  404 (683)
                      .++|.. .+++|+|+||.||+|..  +|+.||||++..     ......+..|..++..+ +||||+++++++.+  ..|
T Consensus        19 ~~~y~~-~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~   97 (353)
T 2i0e_A           19 LTDFNF-LMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY   97 (353)
T ss_dssp             CTTEEE-EEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred             hHHcEE-EEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence            355644 46778999999999998  468999999872     23456788999999988 89999999999866  789


Q ss_pred             EEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEec
Q 005680          405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISG  484 (683)
Q Consensus       405 LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~D  484 (683)
                      |||||++||+|.+++.          ....+++..++.|+.||+.||.|||+   .+|+||||||+||||+.+|.+||+|
T Consensus        98 lv~E~~~gg~L~~~l~----------~~~~~~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NIll~~~g~vkL~D  164 (353)
T 2i0e_A           98 FVMEYVNGGDLMYHIQ----------QVGRFKEPHAVFYAAEIAIGLFFLQS---KGIIYRDLKLDNVMLDSEGHIKIAD  164 (353)
T ss_dssp             EEEECCCSCBHHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECC
T ss_pred             EEEeCCCCCcHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCEEeccCCHHHEEEcCCCcEEEEe
Confidence            9999999999999994          34569999999999999999999999   6799999999999999999999999


Q ss_pred             CCCccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCC
Q 005680          485 LGLNIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG  539 (683)
Q Consensus       485 FGla~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~  539 (683)
                      ||+++.                         ..++.++|||||||++|+|++|++||.....     ...+..++. ...
T Consensus       165 FG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~-----~~~~~~i~~-~~~  238 (353)
T 2i0e_A          165 FGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE-----DELFQSIME-HNV  238 (353)
T ss_dssp             CTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHH-CCC
T ss_pred             CCcccccccCCcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCH-----HHHHHHHHh-CCC
Confidence            999853                         3467899999999999999999999965321     222333333 334


Q ss_pred             CCChhhHHHHHHHHHHhhhcCCCccccccH
Q 005680          540 IWPLDLAEELAGIALKCLSADQDANRDLRI  569 (683)
Q Consensus       540 ~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~  569 (683)
                      .+|..++..+.+|+.+||..|  |..||++
T Consensus       239 ~~p~~~s~~~~~li~~lL~~d--P~~R~~~  266 (353)
T 2i0e_A          239 AYPKSMSKEAVAICKGLMTKH--PGKRLGC  266 (353)
T ss_dssp             CCCTTSCHHHHHHHHHHTCSC--TTSCTTC
T ss_pred             CCCCCCCHHHHHHHHHHhhcC--HHHcCCC
Confidence            567788999999999999999  7799963

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.1e-35  Score=314.86  Aligned_cols=234  Identities=18%  Similarity=0.269  Sum_probs=179.2

Q ss_pred             hhcCccccccccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCCccceeccccc------ceeE
Q 005680          334 ATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAV--RHPHLVAVMGCCSE------LKCI  405 (683)
Q Consensus       334 at~~F~~~~~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l--~HpnIV~l~g~~~~------~~~L  405 (683)
                      ..++|.. .+.+|+|+||.||+|.++|..||||++... ....+..|.+++..+  +||||+++++++.+      ..++
T Consensus        35 ~~~~y~~-~~~lg~G~~g~V~~~~~~~~~vavK~~~~~-~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~l  112 (337)
T 3mdy_A           35 IAKQIQM-VKQIGKGRYGEVWMGKWRGEKVAVKVFFTT-EEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYL  112 (337)
T ss_dssp             HHHHCEE-EEEEEEETTEEEEEEEETTEEEEEEEEEGG-GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEEEE
T ss_pred             cccceEE-EeEeecCCCeEEEEEEECCceEEEEEEecc-ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCceEE
Confidence            3345544 466789999999999999999999998633 334556666666655  89999999998853      5789


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCC-----CCcEEeccCCCCcccccCCCcE
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTE-----PRPIVHGSLTPSSILLDRNLVA  480 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~-----~~~IiHrDLKP~NILld~~~~~  480 (683)
                      ||||+++|+|.+++.           ...+++..++.|+.||+.||.|||+..     ..+|+||||||+|||++.++.+
T Consensus       113 v~e~~~~g~L~~~l~-----------~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~  181 (337)
T 3mdy_A          113 ITDYHENGSLYDYLK-----------STTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTC  181 (337)
T ss_dssp             EECCCTTCBHHHHHH-----------HCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCE
T ss_pred             EEeccCCCcHHHHhh-----------ccCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCE
Confidence            999999999999993           235899999999999999999999841     1279999999999999999999


Q ss_pred             EEecCCCccc-----------------------------cCCCc------ccccccHHHHHHHHhhC----------CCC
Q 005680          481 KISGLGLNIC-----------------------------DQLNV------RSDIRAFGTLLLHLLTG----------RNW  515 (683)
Q Consensus       481 KL~DFGla~~-----------------------------~~~t~------ksDVwSlGviL~eLltG----------~~P  515 (683)
                      ||+|||++..                             ..++.      ++|||||||++|+|+||          ..|
T Consensus       182 kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p  261 (337)
T 3mdy_A          182 CIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLP  261 (337)
T ss_dssp             EECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCT
T ss_pred             EEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCccccccccccc
Confidence            9999999842                             01122      38999999999999999          555


Q ss_pred             chhhHHHhhhhHHHHHHHh--cCCCCCCCh-----hhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          516 AGLVEKAMALDQTTLMQVL--DGNAGIWPL-----DLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       516 f~~~~~~~~~~~~~~~~il--d~~~~~~p~-----~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      |....... .........+  ......+|.     .+++.+.+|+.+||+.|  |..|||+.+|++.|+.+.+..
T Consensus       262 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d--P~~Rps~~ell~~L~~l~~~~  333 (337)
T 3mdy_A          262 YHDLVPSD-PSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHN--PASRLTALRVKKTLAKMSESQ  333 (337)
T ss_dssp             TTTTSCSS-CCHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHSCSS--GGGSCCHHHHHHHHHHHHHTT
T ss_pred             HhhhcCCC-CchhhhHHHHhhhccCccccccchhhHHHHHHHHHHHHhhhhC--hhhCCCHHHHHHHHHHHHhhc
Confidence            54321100 0111122222  223333443     67889999999999999  889999999999999997643

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=3e-36  Score=319.81  Aligned_cols=238  Identities=20%  Similarity=0.309  Sum_probs=176.2

Q ss_pred             cCccccccccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHH--HHhcCCCCccceecccc-----c--ceeEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSF--LTAVRHPHLVAVMGCCS-----E--LKCIV  406 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~i--L~~l~HpnIV~l~g~~~-----~--~~~LV  406 (683)
                      ++|.. .+.+|+|+||.||+|.+++..||||++... ....+..|..+  +..++||||+++++++.     +  ..+||
T Consensus        13 ~~y~~-~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~-~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~lv   90 (336)
T 3g2f_A           13 DNLKL-LELIGRGRYGAVYKGSLDERPVAVKVFSFA-NRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLV   90 (336)
T ss_dssp             TSEEE-EEEEEECSSEEEEEEEETTEEEEEEEEEGG-GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEEE
T ss_pred             HHhhe-eeecccCCCeEEEEEEECCeEEEEEEeecc-chhhHHHHHHHHHHHhccCcchhhheecccccccCCCceEEEE
Confidence            44433 467789999999999999999999999633 33445555555  45589999999997542     2  56899


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCC------CcEEeccCCCCcccccCCCcE
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEP------RPIVHGSLTPSSILLDRNLVA  480 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~------~~IiHrDLKP~NILld~~~~~  480 (683)
                      |||+++|+|.+++..           ..+++..+..|+.||+.||.|||+..+      .+|+||||||+||||+.++.+
T Consensus        91 ~e~~~~g~L~~~l~~-----------~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~  159 (336)
T 3g2f_A           91 MEYYPNGSLXKYLSL-----------HTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTC  159 (336)
T ss_dssp             ECCCTTCBHHHHHHH-----------CCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCE
T ss_pred             EecCCCCcHHHHHhh-----------cccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcE
Confidence            999999999999942           235899999999999999999999410      179999999999999999999


Q ss_pred             EEecCCCccc----------------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhH
Q 005680          481 KISGLGLNIC----------------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVE  520 (683)
Q Consensus       481 KL~DFGla~~----------------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~  520 (683)
                      ||+|||++..                                        ..++.++|||||||++|+|+||..||....
T Consensus       160 kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~  239 (336)
T 3g2f_A          160 VISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGE  239 (336)
T ss_dssp             EECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTS
T ss_pred             EEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCcc
Confidence            9999999842                                        023457899999999999999976653211


Q ss_pred             HH------------hhhhHHHHHHHhc--CCCCCCC------hhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          521 KA------------MALDQTTLMQVLD--GNAGIWP------LDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       521 ~~------------~~~~~~~~~~ild--~~~~~~p------~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      ..            ...........+.  ...+.+|      ..+++.+.+||.+||+.|  |..|||+.++++.|+.+.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~d--P~~Rps~~e~l~~L~~ll  317 (336)
T 3g2f_A          240 SVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQD--AEARLTAQXAEERMAELM  317 (336)
T ss_dssp             CCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSS--GGGSCCHHHHHHHHHHHH
T ss_pred             chhHHHHhhhcccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCC--hhhCcchHHHHHHHHHHH
Confidence            00            0000111111111  1222222      237778999999999999  889999999999999998


Q ss_pred             Hhcccccc
Q 005680          581 KKADGLAD  588 (683)
Q Consensus       581 ~~~~~~~~  588 (683)
                      ........
T Consensus       318 ~~~~~~~~  325 (336)
T 3g2f_A          318 MIWERNKS  325 (336)
T ss_dssp             HCCCC---
T ss_pred             HHHHhccc
Confidence            76654433

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=5.4e-36  Score=314.58  Aligned_cols=233  Identities=19%  Similarity=0.266  Sum_probs=182.1

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC--C---CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG--L---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~--~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV  406 (683)
                      ++|.. .+.+|+|+||.||+|..  +|..||||++...  .   ....+.+|+.++.+++||||+++++++.+  ..++|
T Consensus        32 ~~y~~-~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv  110 (310)
T 2wqm_A           32 ANFRI-EKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV  110 (310)
T ss_dssp             GGEEE-EEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cceEE-EEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence            34433 45678999999999997  6899999998731  1   23568899999999999999999999865  78999


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      |||+++|+|.+++....      .....+++..++.++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||
T Consensus       111 ~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dl~p~NIl~~~~~~~kl~Dfg  181 (310)
T 2wqm_A          111 LELADAGDLSRMIKHFK------KQKRLIPERTVWKYFVQLCSALEHMHS---RRVMHRDIKPANVFITATGVVKLGDLG  181 (310)
T ss_dssp             EECCCSCBHHHHHHHHH------HTTCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCC-
T ss_pred             EecCCCCCHHHHHHHhc------ccccCCCHHHHHHHHHHHHHHHHHHhh---CCeeCCCCcHHHEEEcCCCCEEEEecc
Confidence            99999999999995432      235678999999999999999999999   679999999999999999999999999


Q ss_pred             Cccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCC-
Q 005680          487 LNIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGI-  540 (683)
Q Consensus       487 la~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~-  540 (683)
                      ++..                         ..++.++||||||+++|+|++|..||......   .......+....... 
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~---~~~~~~~~~~~~~~~~  258 (310)
T 2wqm_A          182 LGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN---LYSLCKKIEQCDYPPL  258 (310)
T ss_dssp             -----------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CC---HHHHHHHHHTTCSCCC
T ss_pred             ceeeecCCCccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchh---HHHHHHHhhcccCCCC
Confidence            8742                         24678999999999999999999998642210   111112222222222 


Q ss_pred             CChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          541 WPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       541 ~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      .+..++..+.+|+.+||..|  |..|||+.+|++.|+.+....
T Consensus       259 ~~~~~~~~l~~li~~~l~~d--p~~Rps~~~il~~l~~l~~~~  299 (310)
T 2wqm_A          259 PSDHYSEELRQLVNMCINPD--PEKRPDVTYVYDVAKRMHACT  299 (310)
T ss_dssp             CTTTSCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHcCCC--hhhCCCHHHHHHHHHHHHHhh
Confidence            23467889999999999999  889999999999999998654

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=5.4e-36  Score=311.33  Aligned_cols=217  Identities=20%  Similarity=0.293  Sum_probs=178.1

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC--CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCch
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG--LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLR  416 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~--~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~  416 (683)
                      .++|.|+||.||+|.+  ++..||||.+...  .....+.+|+.++..++|||||++++++.+  ..++||||+++++|.
T Consensus        28 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~  107 (295)
T 2clq_A           28 VVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLS  107 (295)
T ss_dssp             CEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCSEEEHH
T ss_pred             EEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCCCCCHH
Confidence            4788999999999998  6789999998732  335678999999999999999999999965  689999999999999


Q ss_pred             hhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC-CCcEEEecCCCccc-----
Q 005680          417 DKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR-NLVAKISGLGLNIC-----  490 (683)
Q Consensus       417 ~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~-~~~~KL~DFGla~~-----  490 (683)
                      +++...       .....+++..+..++.||+.||.|||+   .+|+||||||+|||++. ++.+||+|||++..     
T Consensus       108 ~~l~~~-------~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~  177 (295)
T 2clq_A          108 ALLRSK-------WGPLKDNEQTIGFYTKQILEGLKYLHD---NQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGIN  177 (295)
T ss_dssp             HHHHHT-------TCCCTTCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC--
T ss_pred             HHHHhh-------ccCCCccHHHHHHHHHHHHHHHHHHHh---CCEEccCCChhhEEEECCCCCEEEeecccccccCCCC
Confidence            999643       234467899999999999999999999   67999999999999987 89999999998742     


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEE  548 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~  548 (683)
                                            ..++.++||||||+++|+|++|++||......   .............+..|..++..
T Consensus       178 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  254 (295)
T 2clq_A          178 PCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEP---QAAMFKVGMFKVHPEIPESMSAE  254 (295)
T ss_dssp             ---CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSH---HHHHHHHHHHCCCCCCCTTSCHH
T ss_pred             CcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCch---hHHHHhhccccccccccccCCHH
Confidence                                  12678999999999999999999999643221   11111112223445567778899


Q ss_pred             HHHHHHHhhhcCCCccccccHHHHHH
Q 005680          549 LAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       549 l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +.+|+.+||+.|  |..|||+.+++.
T Consensus       255 ~~~li~~~l~~d--p~~Rps~~~ll~  278 (295)
T 2clq_A          255 AKAFILKCFEPD--PDKRACANDLLV  278 (295)
T ss_dssp             HHHHHHHTTCSS--TTTSCCHHHHHT
T ss_pred             HHHHHHHHccCC--hhhCCCHHHHhc
Confidence            999999999999  889999999864

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=3.9e-36  Score=309.85  Aligned_cols=219  Identities=20%  Similarity=0.270  Sum_probs=179.7

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV  406 (683)
                      ++|.. .+.+|+|+||.||+|..  ++..||||++...    .....+.+|+.++..+ +||||+++++++.+  ..++|
T Consensus        11 ~~y~~-~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv   89 (289)
T 1x8b_A           11 TEFHE-LEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQ   89 (289)
T ss_dssp             HHEEE-EEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEE
T ss_pred             chhhh-hhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEE
Confidence            44443 35678999999999998  6899999998732    2345788999999999 99999999999965  78999


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC---------
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN---------  477 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~---------  477 (683)
                      |||+++|+|.+++....      .....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.+         
T Consensus        90 ~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dikp~NIl~~~~~~~~~~~~~  160 (289)
T 1x8b_A           90 NEYCNGGSLADAISENY------RIMSYFKEAELKDLLLQVGRGLRYIHS---MSLVHMDIKPSNIFISRTSIPNAASEE  160 (289)
T ss_dssp             EECCTTCBHHHHHHHHH------HHTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEC-----------
T ss_pred             EEecCCCcHHHHHHhhc------ccccCCCHHHHHHHHHHHHHHHHHHHh---CCEeecCCCHHHEEEcCCCCCcccccc
Confidence            99999999999996432      123679999999999999999999999   679999999999999844         


Q ss_pred             ----------CcEEEecCCCccc----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhh
Q 005680          478 ----------LVAKISGLGLNIC----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMAL  525 (683)
Q Consensus       478 ----------~~~KL~DFGla~~----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~  525 (683)
                                +.+||+|||++..                      ..+++++|||||||++|+|++|.+|+....     
T Consensus       161 ~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~-----  235 (289)
T 1x8b_A          161 GDEDDWASNKVMFKIGDLGHVTRISSPQVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGD-----  235 (289)
T ss_dssp             ---------CCCEEECCCTTCEETTCSCCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSH-----
T ss_pred             cccccccCCceEEEEcccccccccCCccccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchh-----
Confidence                      4799999998753                      134579999999999999999998764321     


Q ss_pred             hHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          526 DQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       526 ~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                         ....+........|..+++.+.+|+.+||+.|  |..|||+.++++
T Consensus       236 ---~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~d--p~~Rps~~~ll~  279 (289)
T 1x8b_A          236 ---QWHEIRQGRLPRIPQVLSQEFTELLKVMIHPD--PERRPSAMALVK  279 (289)
T ss_dssp             ---HHHHHHTTCCCCCSSCCCHHHHHHHHHHTCSS--GGGSCCHHHHHT
T ss_pred             ---HHHHHHcCCCCCCCcccCHHHHHHHHHHhCCC--cccCCCHHHHhh
Confidence               22334445556667788999999999999999  889999999875

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=5.3e-36  Score=309.30  Aligned_cols=214  Identities=15%  Similarity=0.280  Sum_probs=178.6

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcCC--CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLNN--GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~--~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      ..+.+|+|+||.||+|..  ++..||+|++..  ......+.+|+.++.+++||||++++++|.+  ..++||||+++++
T Consensus        13 ~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   92 (277)
T 3f3z_A           13 LENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELCTGGE   92 (277)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCCSCB
T ss_pred             eeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEeccCCCc
Confidence            345678999999999998  467899999873  3456789999999999999999999999976  6899999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccc---cCCCcEEEecCCCccc-
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL---DRNLVAKISGLGLNIC-  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILl---d~~~~~KL~DFGla~~-  490 (683)
                      |.+++.          ....+++..+..|+.||+.||.|||+   .+|+||||||+|||+   +.++.+||+|||++.. 
T Consensus        93 L~~~~~----------~~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~  159 (277)
T 3f3z_A           93 LFERVV----------HKRVFRESDAARIMKDVLSAVAYCHK---LNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARF  159 (277)
T ss_dssp             HHHHHH----------HHCSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESSSSTTCCEEECCCTTCEEC
T ss_pred             HHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCCHHHEEEecCCCCCcEEEEecccceec
Confidence            999984          44569999999999999999999999   679999999999999   7889999999998843 


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCCh----h
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPL----D  544 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~----~  544 (683)
                                            +.++.++||||||+++|+|++|++||.....     ......+... ....|.    .
T Consensus       160 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~  233 (277)
T 3f3z_A          160 KPGKMMRTKVGTPYYVSPQVLEGLYGPECDEWSAGVMMYVLLCGYPPFSAPTD-----SEVMLKIREG-TFTFPEKDWLN  233 (277)
T ss_dssp             CTTSCBCCCCSCTTTCCHHHHTTCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHC-CCCCCHHHHTT
T ss_pred             cCccchhccCCCCCccChHHhcccCCchhhehhHHHHHHHHHHCCCCCCCCCH-----HHHHHHHHhC-CCCCCchhhhc
Confidence                                  2368899999999999999999999965322     1222233332 222332    4


Q ss_pred             hHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          545 LAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      +++.+.+|+.+||+.|  |..|||+.++++.
T Consensus       234 ~~~~~~~li~~~l~~d--p~~R~s~~~~l~h  262 (277)
T 3f3z_A          234 VSPQAESLIRRLLTKS--PKQRITSLQALEH  262 (277)
T ss_dssp             SCHHHHHHHHHHTCSS--TTTSCCHHHHTTS
T ss_pred             CCHHHHHHHHHHccCC--hhhCcCHHHHhcC
Confidence            6789999999999999  8899999998863

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=6.8e-36  Score=315.66  Aligned_cols=216  Identities=19%  Similarity=0.299  Sum_probs=171.9

Q ss_pred             ccccccCCceEEEEEEE-CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          342 FRLKCAGDWTNVYRGRL-NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~-~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      .+.+|+|+||.||+|.+ +|+.||||++....    ....+.+|+.++++++|||||++++++.+  ..++||||++ |+
T Consensus        26 ~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~-~~  104 (311)
T 3niz_A           26 LEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFEFME-KD  104 (311)
T ss_dssp             EEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEECCS-EE
T ss_pred             hhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEcCCC-CC
Confidence            45678999999999998 78999999997322    23578899999999999999999999976  7899999998 58


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++.         .....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..    
T Consensus       105 l~~~~~---------~~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~  172 (311)
T 3niz_A          105 LKKVLD---------ENKTGLQDSQIKIYLYQLLRGVAHCHQ---HRILHRDLKPQNLLINSDGALKLADFGLARAFGIP  172 (311)
T ss_dssp             HHHHHH---------TCTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEETTSC
T ss_pred             HHHHHH---------hccCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCchHhEEECCCCCEEEccCcCceecCCC
Confidence            888884         234569999999999999999999999   6799999999999999999999999998842    


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC-CCCC-------
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG-NAGI-------  540 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~-~~~~-------  540 (683)
                                            ..++.++|||||||++|+|++|++||.......  ....+...+.. ....       
T Consensus       173 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~  250 (311)
T 3niz_A          173 VRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDD--QLPKIFSILGTPNPREWPQVQEL  250 (311)
T ss_dssp             CC---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTT--HHHHHHHHHCCCCTTTSGGGTTS
T ss_pred             cccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHH--HHHHHHHHHCCCChHHhhhhhcc
Confidence                                  236889999999999999999999996432210  01111111111 1000       


Q ss_pred             ------------------CChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          541 ------------------WPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       541 ------------------~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                                        ..+.+++++.+|+.+||+.|  |.+|||+.++++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~Rpt~~ell~  300 (311)
T 3niz_A          251 PLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFD--PNKRISARDAMN  300 (311)
T ss_dssp             HHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSC--TTTSCCHHHHHT
T ss_pred             chhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCC--hhHCCCHHHHhc
Confidence                              01235678999999999999  889999999875

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=1.4e-36  Score=334.64  Aligned_cols=224  Identities=19%  Similarity=0.248  Sum_probs=181.2

Q ss_pred             HHHHhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc-
Q 005680          330 DIRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-  401 (683)
Q Consensus       330 ei~~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-  401 (683)
                      ++....++|... +++|+|+||.||+|..  ++..||||++..     ......+.+|+.++..++|||||+++++|.+ 
T Consensus        63 ~~~~~~~~y~~~-~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~  141 (410)
T 3v8s_A           63 DLRMKAEDYEVV-KVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDD  141 (410)
T ss_dssp             HHSCCGGGEEEE-EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             hcccCccccEEE-EEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEEC
Confidence            344456677554 6778999999999998  588999999862     2233568899999999999999999999976 


Q ss_pred             -ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcE
Q 005680          402 -LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVA  480 (683)
Q Consensus       402 -~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~  480 (683)
                       ..||||||++||+|.+++.           ...+++..+..|+.||+.||.|||+   .+|+||||||+||||+.+|.+
T Consensus       142 ~~~~lV~E~~~gg~L~~~l~-----------~~~~~e~~~~~~~~qi~~aL~~LH~---~givHrDLKp~NILl~~~g~i  207 (410)
T 3v8s_A          142 RYLYMVMEYMPGGDLVNLMS-----------NYDVPEKWARFYTAEVVLALDAIHS---MGFIHRDVKPDNMLLDKSGHL  207 (410)
T ss_dssp             SEEEEEECCCTTEEHHHHHH-----------HCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCE
T ss_pred             CEEEEEEeCCCCCcHHHHHH-----------cCCCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeeECCCCCE
Confidence             7899999999999999983           2358999999999999999999999   679999999999999999999


Q ss_pred             EEecCCCccc--------------------------cC----CCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHH
Q 005680          481 KISGLGLNIC--------------------------DQ----LNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTL  530 (683)
Q Consensus       481 KL~DFGla~~--------------------------~~----~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~  530 (683)
                      ||+|||+|+.                          ..    ++.++|||||||++|+|+||++||.....     ...+
T Consensus       208 kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~-----~~~~  282 (410)
T 3v8s_A          208 KLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSL-----VGTY  282 (410)
T ss_dssp             EECCCTTCEECCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHH
T ss_pred             EEeccceeEeeccCCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCCh-----hhHH
Confidence            9999999842                          11    67899999999999999999999964322     1222


Q ss_pred             HHHhcC---CCCCCChhhHHHHHHHHHHhhhcCCCccc--cccHHHHHHH
Q 005680          531 MQVLDG---NAGIWPLDLAEELAGIALKCLSADQDANR--DLRIAGVMKE  575 (683)
Q Consensus       531 ~~ild~---~~~~~p~~~~~~l~~Li~~CL~~dP~p~~--RPs~~eVl~~  575 (683)
                      ..++..   ...+.+..++..+.+||.+||..+  |.+  ||++.+|++.
T Consensus       283 ~~i~~~~~~~~~p~~~~~s~~~~~li~~lL~~~--~~rlgR~~~~ei~~H  330 (410)
T 3v8s_A          283 SKIMNHKNSLTFPDDNDISKEAKNLICAFLTDR--EVRLGRNGVEEIKRH  330 (410)
T ss_dssp             HHHHTHHHHCCCCTTCCCCHHHHHHHHHHSSCG--GGCTTSSCHHHHHTS
T ss_pred             HHHHhccccccCCCcccccHHHHHHHHHHccCh--hhhCCCCCHHHHhcC
Confidence            233322   112222367899999999999977  666  9999998764

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6e-37  Score=328.73  Aligned_cols=213  Identities=21%  Similarity=0.308  Sum_probs=177.5

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      ..+.+|+|+||.||+|.+  +|..||||++..     ......+.+|+.+++.++|||||++++++.+  ..++||||+ 
T Consensus        13 i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~E~~-   91 (336)
T 3h4j_B           13 IRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVIEYA-   91 (336)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCC-
T ss_pred             EEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEECC-
Confidence            346778999999999998  789999999862     2334678999999999999999999999966  789999999 


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      +|+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++.. 
T Consensus        92 ~g~l~~~l~----------~~~~l~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~  158 (336)
T 3h4j_B           92 GGELFDYIV----------EKKRMTEDEGRRFFQQIICAIEYCHR---HKIVHRDLKPENLLLDDNLNVKIADFGLSNIM  158 (336)
T ss_dssp             CEEHHHHHH----------HHCSCCHHHHHHHHHHHHHHHHHHHH---HTCCCCCCSTTTEEECTTCCEEECCSSCTBTT
T ss_pred             CCcHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCchhhEEEcCCCCEEEEEeccceec
Confidence            689999984          44579999999999999999999999   6799999999999999999999999999853 


Q ss_pred             -----------------------cC-CCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhH
Q 005680          491 -----------------------DQ-LNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLA  546 (683)
Q Consensus       491 -----------------------~~-~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~  546 (683)
                                             .. .++++|||||||++|+|++|+.||......      .+...+.......|..++
T Consensus       159 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~------~~~~~i~~~~~~~p~~~s  232 (336)
T 3h4j_B          159 TDGNFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIP------NLFKKVNSCVYVMPDFLS  232 (336)
T ss_dssp             TTSBTTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSST------TCBCCCCSSCCCCCTTSC
T ss_pred             cCCcccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHH------HHHHHHHcCCCCCcccCC
Confidence                                   11 267899999999999999999999642111      011111223345566788


Q ss_pred             HHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          547 EELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       547 ~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      +.+.+|+.+||..|  |.+|||+.++++.
T Consensus       233 ~~~~~li~~~L~~d--P~~Rpt~~eil~h  259 (336)
T 3h4j_B          233 PGAQSLIRRMIVAD--PMQRITIQEIRRD  259 (336)
T ss_dssp             HHHHHHHHTTSCSS--GGGSCCHHHHTTC
T ss_pred             HHHHHHHHHHcCCC--hhHCcCHHHHHhC
Confidence            99999999999999  8899999998764

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=2.6e-36  Score=320.06  Aligned_cols=231  Identities=23%  Similarity=0.347  Sum_probs=186.0

Q ss_pred             ccccccccCCceEEEEEEE-------CCeeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEE
Q 005680          340 ERFRLKCAGDWTNVYRGRL-------NHASVAIKTLNNGL---SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVF  407 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~-------~g~~VAvK~l~~~~---~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~  407 (683)
                      ...+.+|.|+||.||+|.+       ++..||||++....   ....+.+|+.++.+++||||+++++++.+  ..||||
T Consensus        33 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  112 (327)
T 2yfx_A           33 TLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILM  112 (327)
T ss_dssp             EEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             EEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCcEEEE
Confidence            3446778999999999984       45689999997332   23568899999999999999999999976  789999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC---CCcEEEec
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR---NLVAKISG  484 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~---~~~~KL~D  484 (683)
                      ||+++|+|.+++.......   .....+++..++.++.||+.||.|||+   .+|+||||||+|||++.   ++.+||+|
T Consensus       113 e~~~~~~L~~~l~~~~~~~---~~~~~~~~~~~~~i~~qi~~al~~LH~---~~i~H~dlkp~NIli~~~~~~~~~kl~D  186 (327)
T 2yfx_A          113 ELMAGGDLKSFLRETRPRP---SQPSSLAMLDLLHVARDIACGCQYLEE---NHFIHRDIAARNCLLTCPGPGRVAKIGD  186 (327)
T ss_dssp             ECCTTEEHHHHHHHTSCCS---SSTTSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESCSSTTCCEEECC
T ss_pred             ecCCCCcHHHHHHhhcccc---cccccccHHHHHHHHHHHHHHHHHHhh---CCeecCcCCHhHEEEecCCCcceEEECc
Confidence            9999999999996542110   123569999999999999999999999   67999999999999984   45699999


Q ss_pred             CCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcC
Q 005680          485 LGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDG  536 (683)
Q Consensus       485 FGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~  536 (683)
                      ||++..                           ..++.++|||||||++|+|+| |.+||.....     ......+...
T Consensus       187 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~-----~~~~~~~~~~  261 (327)
T 2yfx_A          187 FGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSN-----QEVLEFVTSG  261 (327)
T ss_dssp             CHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH-----HHHHHHHHTT
T ss_pred             cccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCH-----HHHHHHHhcC
Confidence            998741                           346789999999999999998 9999865322     2223334444


Q ss_pred             CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          537 NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       537 ~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      .....+..++..+.+|+.+||+.|  |..|||+.++++.|+.+....
T Consensus       262 ~~~~~~~~~~~~l~~li~~~l~~d--p~~Rps~~~ll~~l~~~~~~~  306 (327)
T 2yfx_A          262 GRMDPPKNCPGPVYRIMTQCWQHQ--PEDRPNFAIILERIEYCTQDP  306 (327)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHCH
T ss_pred             CCCCCCCCCCHHHHHHHHHHhcCC--hhhCcCHHHHHHHHHHHhcCH
Confidence            455566778899999999999999  889999999999999987643

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=7.4e-36  Score=309.63  Aligned_cols=218  Identities=21%  Similarity=0.326  Sum_probs=182.0

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV  406 (683)
                      ++|.. .+.+|.|+||.||+|..  ++..||||++..     ......+.+|+.++++++||||+++++++.+  ..++|
T Consensus        14 ~~y~~-~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   92 (284)
T 2vgo_A           14 DDFDI-GRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLM   92 (284)
T ss_dssp             GGEEE-EEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhcee-eheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEE
Confidence            34443 35678999999999998  578999999862     2345678999999999999999999999965  78999


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      |||+++|+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||
T Consensus        93 ~e~~~~~~L~~~l~----------~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~Dfg  159 (284)
T 2vgo_A           93 LEFAPRGELYKELQ----------KHGRFDEQRSATFMEELADALHYCHE---RKVIHRDIKPENLLMGYKGELKIADFG  159 (284)
T ss_dssp             ECCCTTEEHHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCSGGGEEECTTCCEEECCCT
T ss_pred             EEeCCCCcHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCHHHEEEcCCCCEEEeccc
Confidence            99999999999994          34568999999999999999999999   679999999999999999999999999


Q ss_pred             Cccc-----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCCh
Q 005680          487 LNIC-----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPL  543 (683)
Q Consensus       487 la~~-----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~  543 (683)
                      ++..                       ..++.++||||||+++|+|++|.+||.....     ......+.. ....+|.
T Consensus       160 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-----~~~~~~~~~-~~~~~~~  233 (284)
T 2vgo_A          160 WSVHAPSLRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSH-----TETHRRIVN-VDLKFPP  233 (284)
T ss_dssp             TCEECSSSCBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHHHHT-TCCCCCT
T ss_pred             ccccCcccccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCH-----hHHHHHHhc-cccCCCC
Confidence            8742                       2467899999999999999999999975322     111222222 3345667


Q ss_pred             hhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          544 DLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       544 ~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .++..+.+|+.+||+.|  |..|||+.++++.
T Consensus       234 ~~~~~~~~li~~~l~~~--p~~Rps~~~ll~h  263 (284)
T 2vgo_A          234 FLSDGSKDLISKLLRYH--PPQRLPLKGVMEH  263 (284)
T ss_dssp             TSCHHHHHHHHHHSCSS--GGGSCCHHHHHTC
T ss_pred             cCCHHHHHHHHHHhhcC--HhhCCCHHHHhhC
Confidence            78899999999999999  8899999999864

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=2.7e-36  Score=313.86  Aligned_cols=221  Identities=22%  Similarity=0.331  Sum_probs=178.0

Q ss_pred             CccccccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc------cee
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE------LKC  404 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~------~~~  404 (683)
                      .+....+.+|+|+||.||+|.+  ++..||+|.+...    .....+.+|+.++++++||||+++++++.+      ..+
T Consensus        26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~  105 (290)
T 1t4h_A           26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIV  105 (290)
T ss_dssp             CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEE
T ss_pred             eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEE
Confidence            3444556789999999999998  5788999998732    123568899999999999999999998743      479


Q ss_pred             EEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccccc-CCCcEEEe
Q 005680          405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD-RNLVAKIS  483 (683)
Q Consensus       405 LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld-~~~~~KL~  483 (683)
                      +||||+++|+|.+++.          ....+++..+..|+.||+.||.|||+.+ .+|+||||||+|||++ .++.+||+
T Consensus       106 lv~e~~~~~~L~~~l~----------~~~~~~~~~~~~~~~qi~~~l~~lH~~~-~~i~H~dikp~Nil~~~~~~~~kl~  174 (290)
T 1t4h_A          106 LVTELMTSGTLKTYLK----------RFKVMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIG  174 (290)
T ss_dssp             EEEECCCSCBHHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCSCCCGGGEEESSTTSCEEEC
T ss_pred             EEEEecCCCCHHHHHH----------HccCCCHHHHHHHHHHHHHHHHHHHcCC-CCEEECCCCHHHEEEECCCCCEEEe
Confidence            9999999999999993          4467999999999999999999999943 2399999999999997 78999999


Q ss_pred             cCCCccc----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC-CCCC
Q 005680          484 GLGLNIC----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG-NAGI  540 (683)
Q Consensus       484 DFGla~~----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~-~~~~  540 (683)
                      |||++..                      +.++.++|||||||++|+|++|+.||......    ......+... ....
T Consensus       175 Dfg~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~----~~~~~~~~~~~~~~~  250 (290)
T 1t4h_A          175 DLGLATLKRASFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNA----AQIYRRVTSGVKPAS  250 (290)
T ss_dssp             CTTGGGGCCTTSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSH----HHHHHHHTTTCCCGG
T ss_pred             eCCCcccccccccccccCCcCcCCHHHHhccCCCcchHHHHHHHHHHHHhCCCCCCCcCcH----HHHHHHHhccCCccc
Confidence            9999843                      24678999999999999999999999642221    1122222222 1222


Q ss_pred             CChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          541 WPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       541 ~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ++...++.+.+|+.+||+.|  |..|||+.++++
T Consensus       251 ~~~~~~~~l~~li~~~l~~d--p~~Rps~~ell~  282 (290)
T 1t4h_A          251 FDKVAIPEVKEIIEGCIRQN--KDERYSIKDLLN  282 (290)
T ss_dssp             GGGCCCHHHHHHHHHHSCSS--GGGSCCHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHccCC--hhhCCCHHHHhh
Confidence            34455688999999999999  889999999875

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=6.2e-36  Score=314.36  Aligned_cols=218  Identities=18%  Similarity=0.259  Sum_probs=178.0

Q ss_pred             cccccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          339 SERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       339 ~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      ....+.+|.|+||.||+|..  +|..||||.+........+.+|+.++..++||||+++++++.+  ..++||||+++|+
T Consensus        31 y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~  110 (314)
T 3com_A           31 FDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGS  110 (314)
T ss_dssp             EEEEEECC----CEEEEEEETTTCCEEEEEEEETTSCCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEE
T ss_pred             hhhheeeccCCCeEEEEEEECCCCCEEEEEecCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEeecCCCCC
Confidence            34456788999999999998  4899999999866666889999999999999999999999865  7899999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++..         ....+++..+..++.||+.||.|||+   .+|+|+||||+|||++.++.+||+|||++..    
T Consensus       111 L~~~~~~---------~~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~  178 (314)
T 3com_A          111 VSDIIRL---------RNKTLTEDEIATILQSTLKGLEYLHF---MRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDT  178 (314)
T ss_dssp             HHHHHHH---------HTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECBTT
T ss_pred             HHHHHHh---------cCCCCCHHHHHHHHHHHHHHHHHHHh---CCCcCCCcCHHHEEECCCCCEEEeecccchhhhhh
Confidence            9999942         34579999999999999999999999   6799999999999999999999999998742    


Q ss_pred             ---------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC--CCCCCChhhHH
Q 005680          491 ---------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG--NAGIWPLDLAE  547 (683)
Q Consensus       491 ---------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~--~~~~~p~~~~~  547 (683)
                                           ..++.++||||||+++|+|++|.+||......     .....+...  .....+..++.
T Consensus       179 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  253 (314)
T 3com_A          179 MAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPM-----RAIFMIPTNPPPTFRKPELWSD  253 (314)
T ss_dssp             BSCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHH-----HHHHHHHHSCCCCCSSGGGSCH
T ss_pred             ccccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChH-----HHHHHHhcCCCcccCCcccCCH
Confidence                                 23678999999999999999999999753221     111111111  12233556788


Q ss_pred             HHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          548 ELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       548 ~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .+.+|+.+||..|  |..|||+.++++.
T Consensus       254 ~l~~li~~~l~~d--p~~Rpt~~~ll~~  279 (314)
T 3com_A          254 NFTDFVKQCLVKS--PEQRATATQLLQH  279 (314)
T ss_dssp             HHHHHHHHHTCSC--TTTSCCHHHHTTS
T ss_pred             HHHHHHHHHccCC--hhhCcCHHHHHhC
Confidence            9999999999999  8899999999763

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=5.1e-36  Score=312.40  Aligned_cols=217  Identities=17%  Similarity=0.214  Sum_probs=169.7

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      .+.+|+|+||.||+|..  +|..||||++...    .....+.+|+.++++++|||||++++++.+  ..+|||||+++ 
T Consensus         7 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-   85 (292)
T 3o0g_A            7 LEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQ-   85 (292)
T ss_dssp             EEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSE-
T ss_pred             eeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEecCCC-
Confidence            45678999999999998  6899999998722    223678899999999999999999999965  78999999985 


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+.+.         .....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..   
T Consensus        86 ~l~~~~~---------~~~~~l~~~~~~~~~~ql~~~l~~lH~---~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~  153 (292)
T 3o0g_A           86 DLKKYFD---------SCNGDLDPEIVKSFLFQLLKGLGFCHS---RNVLHRDLKPQNLLINRNGELKLANFGLARAFGI  153 (292)
T ss_dssp             EHHHHHH---------HTTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECCS
T ss_pred             CHHHHHH---------hCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEeecccceecCC
Confidence            6666553         234679999999999999999999999   6799999999999999999999999999842   


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhc-CC---------
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLD-GN---------  537 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild-~~---------  537 (683)
                                             ..++.++|||||||++|+|+||..||........... .+..... +.         
T Consensus       154 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~  232 (292)
T 3o0g_A          154 PVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLK-RIFRLLGTPTEEQWPSMTK  232 (292)
T ss_dssp             CCSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHH-HHHHHHCCCCTTTCTTGGG
T ss_pred             ccccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHH-HHHHHhCCCChhhhhhhcc
Confidence                                   1268899999999999999998777532111000000 1111110 00         


Q ss_pred             ---------------CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          538 ---------------AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       538 ---------------~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                                     .....+.++..+.+|+.+||+.|  |.+|||+.++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~R~t~~e~l~  282 (292)
T 3o0g_A          233 LPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCN--PVQRISAEEALQ  282 (292)
T ss_dssp             STTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSS--GGGSCCHHHHHT
T ss_pred             cccccccccccCCcchhhcccccChHHHHHHHHHhccC--hhhCCCHHHHhc
Confidence                           01122356789999999999999  889999999875

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=5.6e-36  Score=309.08  Aligned_cols=216  Identities=21%  Similarity=0.320  Sum_probs=180.8

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccccc------------------
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE------------------  401 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~------------------  401 (683)
                      .+++|.|+||.||+|.+  +|+.||||++....  ..+.+|+.++.+++||||+++++++..                  
T Consensus        16 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (284)
T 2a19_B           16 IELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN--EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTK   93 (284)
T ss_dssp             EEEEECSSSCCEEEEEETTTCCEEEEEEEECCS--GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---------CCEEE
T ss_pred             eeeeccCCceEEEEEEEcCCCeEEEEEEecccc--HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccccccccCcc
Confidence            36778999999999998  58999999997432  467899999999999999999998742                  


Q ss_pred             ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEE
Q 005680          402 LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAK  481 (683)
Q Consensus       402 ~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~K  481 (683)
                      ..++||||+++|+|.+++...        ....+++..++.++.||+.||.|||+   .+|+||||||+|||++.++.+|
T Consensus        94 ~~~lv~e~~~~~~L~~~l~~~--------~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~k  162 (284)
T 2a19_B           94 CLFIQMEFCDKGTLEQWIEKR--------RGEKLDKVLALELFEQITKGVDYIHS---KKLINRDLKPSNIFLVDTKQVK  162 (284)
T ss_dssp             EEEEEECCCCSCBHHHHHHHG--------GGSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEE
T ss_pred             eEEEEEeccCCCCHHHHHhhc--------cCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCCHHHEEEcCCCCEE
Confidence            368999999999999999533        33579999999999999999999999   6799999999999999999999


Q ss_pred             EecCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCC
Q 005680          482 ISGLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGN  537 (683)
Q Consensus       482 L~DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~  537 (683)
                      |+|||++..                        ..++.++||||||+++|+|++|..|+.....       ....+..  
T Consensus       163 l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~-------~~~~~~~--  233 (284)
T 2a19_B          163 IGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSK-------FFTDLRD--  233 (284)
T ss_dssp             ECCCTTCEESSCCSCCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHHH-------HHHHHHT--
T ss_pred             ECcchhheeccccccccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHHH-------HHHHhhc--
Confidence            999998743                        2467899999999999999999998753221       1112222  


Q ss_pred             CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          538 AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       538 ~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                       ...+..++..+.+|+.+||+.|  |..|||+.++++.|..+...
T Consensus       234 -~~~~~~~~~~~~~li~~~l~~d--p~~Rps~~e~l~~l~~~~~~  275 (284)
T 2a19_B          234 -GIISDIFDKKEKTLLQKLLSKK--PEDRPNTSEILRTLTVWKKS  275 (284)
T ss_dssp             -TCCCTTSCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHTC-
T ss_pred             -ccccccCCHHHHHHHHHHccCC--hhhCcCHHHHHHHHHHHhhC
Confidence             2234566788999999999999  88999999999999988654

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=6.6e-36  Score=308.74  Aligned_cols=218  Identities=26%  Similarity=0.378  Sum_probs=176.6

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV  406 (683)
                      ++|.. .+.+|+|+||.||+|..  +|..||||++..     ......+.+|+.++.+++||||+++++++.+  ..++|
T Consensus        11 ~~y~~-~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   89 (278)
T 3cok_A           11 EDFKV-GNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV   89 (278)
T ss_dssp             GGEEE-EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccee-eeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence            44543 35678999999999997  689999999862     2234678999999999999999999999966  67999


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      |||+++++|.+++..         ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||
T Consensus        90 ~e~~~~~~L~~~l~~---------~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nili~~~~~~kl~dfg  157 (278)
T 3cok_A           90 LEMCHNGEMNRYLKN---------RVKPFSENEARHFMHQIITGMLYLHS---HGILHRDLTLSNLLLTRNMNIKIADFG  157 (278)
T ss_dssp             EECCTTEEHHHHHHT---------CSSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSSCCGGGEEECTTCCEEECCCT
T ss_pred             EecCCCCcHHHHHhh---------ccCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCCEEEEeec
Confidence            999999999999942         33579999999999999999999999   679999999999999999999999999


Q ss_pred             Cccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCC
Q 005680          487 LNIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIW  541 (683)
Q Consensus       487 la~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~  541 (683)
                      ++..                         ..++.++||||||+++|+|++|++||.....     ...+..+. ......
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----~~~~~~~~-~~~~~~  231 (278)
T 3cok_A          158 LATQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTV-----KNTLNKVV-LADYEM  231 (278)
T ss_dssp             TCEECC----------------------------CTHHHHHHHHHHHHHHSSCSSCCCSC-----C-----CC-SSCCCC
T ss_pred             ceeeccCCCCcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhH-----HHHHHHHh-hcccCC
Confidence            8753                         2356799999999999999999999964221     11111111 122345


Q ss_pred             ChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          542 PLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       542 p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      |..++..+.+|+.+||+.|  |..|||+.++++
T Consensus       232 ~~~~~~~~~~li~~~l~~d--p~~Rps~~~~l~  262 (278)
T 3cok_A          232 PSFLSIEAKDLIHQLLRRN--PADRLSLSSVLD  262 (278)
T ss_dssp             CTTSCHHHHHHHHHHSCSS--GGGSCCHHHHTT
T ss_pred             ccccCHHHHHHHHHHcccC--HhhCCCHHHHhc
Confidence            6677889999999999999  889999998875

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=3.9e-36  Score=334.36  Aligned_cols=219  Identities=20%  Similarity=0.275  Sum_probs=177.7

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVF  407 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~  407 (683)
                      ++|.. .+.+|+|+||.||+|..  +|..||+|++....    ....+.+|+.+++.++|||||++++++.+  ..||||
T Consensus        11 ~~Y~i-~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~   89 (444)
T 3soa_A           11 EEYQL-FEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIF   89 (444)
T ss_dssp             HHEEE-EEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             CCeEE-EEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEE
Confidence            34433 45678999999999998  68999999987433    23568899999999999999999999976  789999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccccc---CCCcEEEec
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD---RNLVAKISG  484 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld---~~~~~KL~D  484 (683)
                      ||++||+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++   .++.+||+|
T Consensus        90 E~~~gg~L~~~i~----------~~~~~~e~~~~~i~~qil~aL~~lH~---~givHrDlKp~NIll~~~~~~~~vkL~D  156 (444)
T 3soa_A           90 DLVTGGELFEDIV----------AREYYSEADASHCIQQILEAVLHCHQ---MGVVHRNLKPENLLLASKLKGAAVKLAD  156 (444)
T ss_dssp             CCCBCCBHHHHHH----------HCSCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSSTTEEESBSSTTCCEEECC
T ss_pred             EeCCCCCHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEeccCCCCcEEEcc
Confidence            9999999999994          44679999999999999999999999   6799999999999998   468899999


Q ss_pred             CCCccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCC-
Q 005680          485 LGLNIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNA-  538 (683)
Q Consensus       485 FGla~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~-  538 (683)
                      ||++..                         ..++.++|||||||++|+|++|.+||.....     ...+..+..... 
T Consensus       157 FG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~-----~~~~~~i~~~~~~  231 (444)
T 3soa_A          157 FGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQ-----HRLYQQIKAGAYD  231 (444)
T ss_dssp             CSSCBCCCTTCCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSH-----HHHHHHHHHTCCC
T ss_pred             CceeEEecCCCceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccH-----HHHHHHHHhCCCC
Confidence            999843                         2478899999999999999999999964322     122223332211 


Q ss_pred             --CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          539 --GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       539 --~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                        ......+++.+.+|+.+||+.|  |.+|||+.++++.
T Consensus       232 ~~~~~~~~~s~~~~~li~~~L~~d--P~~Rpta~e~L~h  268 (444)
T 3soa_A          232 FPSPEWDTVTPEAKDLINKMLTIN--PSKRITAAEALKH  268 (444)
T ss_dssp             CCTTTTTTSCHHHHHHHHHHSCSS--TTTSCCHHHHHHS
T ss_pred             CCccccccCCHHHHHHHHHHcCCC--hhHCCCHHHHhcC
Confidence              1112367889999999999999  8899999999863

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=2e-36  Score=312.46  Aligned_cols=227  Identities=19%  Similarity=0.283  Sum_probs=182.9

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc----ceeE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE----LKCI  405 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----~~~L  405 (683)
                      ++|.. .+.+|.|+||.||+|..  +|+.||+|.+....    ....+.+|+.++++++||||+++++++.+    ..++
T Consensus         6 ~~y~~-~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   84 (279)
T 2w5a_A            6 EDYEV-LYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI   84 (279)
T ss_dssp             GGEEE-EEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred             hheee-ehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence            34433 46678999999999998  68999999997322    23568899999999999999999998732    6799


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCC--CCcEEeccCCCCcccccCCCcEEEe
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTE--PRPIVHGSLTPSSILLDRNLVAKIS  483 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~--~~~IiHrDLKP~NILld~~~~~KL~  483 (683)
                      ||||+++|+|.+++....      .....+++..++.|+.||+.||.|||+.+  ..+|+||||||+|||++.++.+||+
T Consensus        85 v~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~  158 (279)
T 2w5a_A           85 VMEYCEGGDLASVITKGT------KERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLG  158 (279)
T ss_dssp             EEECCTTEEHHHHHHHHH------HTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEEC
T ss_pred             EEeCCCCCCHHHHHHhhc------ccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEe
Confidence            999999999999996442      23456999999999999999999999932  0129999999999999999999999


Q ss_pred             cCCCccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCC
Q 005680          484 GLGLNIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNA  538 (683)
Q Consensus       484 DFGla~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~  538 (683)
                      |||++..                         ..++.++||||||+++|+|+||++||.....     ......+.....
T Consensus       159 dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----~~~~~~i~~~~~  233 (279)
T 2w5a_A          159 DFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQ-----KELAGKIREGKF  233 (279)
T ss_dssp             CCCHHHHC---CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHTCC
T ss_pred             cCchheeeccccccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCH-----HHHHHHHhhccc
Confidence            9998742                         2467899999999999999999999975322     122233444444


Q ss_pred             CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHH
Q 005680          539 GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       539 ~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                      ...|..++..+.+|+.+||+.|  |..|||+.+|++.+
T Consensus       234 ~~~~~~~~~~l~~li~~~l~~~--p~~Rps~~~ll~~~  269 (279)
T 2w5a_A          234 RRIPYRYSDELNEIITRMLNLK--DYHRPSVEEILENP  269 (279)
T ss_dssp             CCCCTTSCHHHHHHHHHHTCSS--GGGSCCHHHHHTST
T ss_pred             ccCCcccCHHHHHHHHHHcCCC--cccCCCHHHHHhCh
Confidence            5667778899999999999999  88999999998754

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=3.2e-36  Score=327.31  Aligned_cols=215  Identities=21%  Similarity=0.292  Sum_probs=173.2

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCCC--CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCc
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL--SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNL  415 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~--~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL  415 (683)
                      .+++|+|+||.||+|..  +|..||||++....  ....+.+|+.++.+++|||||+++++|.+  ..+|||||+++|+|
T Consensus        94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L  173 (373)
T 2x4f_A           94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGEL  173 (373)
T ss_dssp             EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCEE
T ss_pred             ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcH
Confidence            35689999999999998  68999999997432  34678999999999999999999999966  78999999999999


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccc--cCCCcEEEecCCCccc---
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL--DRNLVAKISGLGLNIC---  490 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILl--d~~~~~KL~DFGla~~---  490 (683)
                      .+++..         ....+++..++.|+.||+.||.|||+   .+|+||||||+|||+  +.++.+||+|||+++.   
T Consensus       174 ~~~l~~---------~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~  241 (373)
T 2x4f_A          174 FDRIID---------ESYNLTELDTILFMKQICEGIRHMHQ---MYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKP  241 (373)
T ss_dssp             HHHHHH---------TGGGCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCT
T ss_pred             HHHHHh---------cCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCCHHHEEEecCCCCcEEEEeCCCceecCC
Confidence            999852         33568999999999999999999999   679999999999999  5678999999999853   


Q ss_pred             ---------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCC---CCChhhH
Q 005680          491 ---------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG---IWPLDLA  546 (683)
Q Consensus       491 ---------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~---~~p~~~~  546 (683)
                                           ..++.++|||||||++|+|++|++||.....     ...+..++.....   .....++
T Consensus       242 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~  316 (373)
T 2x4f_A          242 REKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDND-----AETLNNILACRWDLEDEEFQDIS  316 (373)
T ss_dssp             TCBCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHHHHHTCCCSCSGGGTTSC
T ss_pred             ccccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHHHhccCCCChhhhccCC
Confidence                                 2367799999999999999999999965322     2223333332211   1123568


Q ss_pred             HHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          547 EELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       547 ~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      +.+.+|+.+||+.|  |..|||+.++++.
T Consensus       317 ~~~~~li~~~L~~d--p~~Rps~~e~l~h  343 (373)
T 2x4f_A          317 EEAKEFISKLLIKE--KSWRISASEALKH  343 (373)
T ss_dssp             HHHHHHHHTTSCSS--GGGSCCHHHHHHS
T ss_pred             HHHHHHHHHHcCCC--hhhCCCHHHHhcC
Confidence            89999999999999  8899999999873

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=3.4e-36  Score=312.60  Aligned_cols=233  Identities=14%  Similarity=0.189  Sum_probs=181.1

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccccc---ceeEEEeec
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE---LKCIVFEYM  410 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~---~~~LV~Ey~  410 (683)
                      ++|. ..+.+|+|+||.||+|..  ++..||||++........+.+|+.++..++|++++..++++..   ..++||||+
T Consensus         9 ~~y~-~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~   87 (296)
T 4hgt_A            9 NRYR-LGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL   87 (296)
T ss_dssp             --CE-EEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC
T ss_pred             CceE-EeeeecCCCCeEEEEEEEcCCCceEEEEeecccccchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEEcc
Confidence            4454 346778999999999997  7899999998755445678999999999999998888877733   679999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccc---cCCCcEEEecCCC
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL---DRNLVAKISGLGL  487 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILl---d~~~~~KL~DFGl  487 (683)
                       +|+|.+++..         ....+++..+..++.||+.||.|||+   .+|+||||||+|||+   +.++.+||+|||+
T Consensus        88 -~~~L~~~~~~---------~~~~~~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~  154 (296)
T 4hgt_A           88 -GPSLEDLFNF---------CSRKFSLKTVLLLADQMISRIEYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGL  154 (296)
T ss_dssp             -CCBHHHHHHH---------TTSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECCGGGTTCEEECCCTT
T ss_pred             -CCCHHHHHHH---------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeeeeccCCCCeEEEecCcc
Confidence             8999999952         24569999999999999999999999   679999999999999   7889999999999


Q ss_pred             ccc--------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh--HHHHHHH
Q 005680          488 NIC--------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD--QTTLMQV  533 (683)
Q Consensus       488 a~~--------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~--~~~~~~i  533 (683)
                      +..                                ..++.++|||||||++|+|++|++||..........  .......
T Consensus       155 a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~  234 (296)
T 4hgt_A          155 AKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKK  234 (296)
T ss_dssp             CEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHH
T ss_pred             ceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhccc
Confidence            842                                235778999999999999999999996432210000  0001111


Q ss_pred             hcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhcc
Q 005680          534 LDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKAD  584 (683)
Q Consensus       534 ld~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~~  584 (683)
                      ...........+++.+.+|+.+||+.|  |..|||+.+|++.|+.+.....
T Consensus       235 ~~~~~~~~~~~~~~~l~~li~~~l~~~--p~~Rpt~~~l~~~l~~~~~~~~  283 (296)
T 4hgt_A          235 MSTPIEVLCKGYPSEFATYLNFCRSLR--FDDKPDYSYLRQLFRNLFHRQG  283 (296)
T ss_dssp             HHSCHHHHTTTSCHHHHHHHHHHHTSC--TTCCCCHHHHHHHHHHHHHHHT
T ss_pred             ccchhhhhhccCCHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHHHHHhC
Confidence            111111112345789999999999999  8899999999999999987653

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=2.1e-36  Score=335.70  Aligned_cols=218  Identities=22%  Similarity=0.274  Sum_probs=172.8

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV  406 (683)
                      ++|.. .+.+|+|+||.||+|..  +|..||||++..     ......+.+|+.++..++|||||+++++|.+  ..|||
T Consensus       148 ~~y~~-~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  226 (446)
T 4ejn_A          148 NEFEY-LKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV  226 (446)
T ss_dssp             GGEEE-EEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred             HHcEE-eEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence            34543 46778999999999998  689999999862     2233567889999999999999999999965  78999


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      |||+++|+|.+++.          ....+++..+..|+.||+.||.|||+.  .+|+||||||+||||+.++.+||+|||
T Consensus       227 ~e~~~~~~L~~~l~----------~~~~~~~~~~~~~~~qi~~aL~~LH~~--~giiHrDlkp~NIll~~~~~~kl~DFG  294 (446)
T 4ejn_A          227 MEYANGGELFFHLS----------RERVFSEDRARFYGAEIVSALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDFG  294 (446)
T ss_dssp             ECCCSSCBHHHHHH----------HHSCCCHHHHHHHHHHHHHHHHHHHHH--TCCCCCCCCGGGEEECSSSCEEECCCC
T ss_pred             EeeCCCCcHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHhhc--CCEEECCCCHHHEEECCCCCEEEccCC
Confidence            99999999999993          445799999999999999999999971  359999999999999999999999999


Q ss_pred             Cccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCC
Q 005680          487 LNIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIW  541 (683)
Q Consensus       487 la~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~  541 (683)
                      +|+.                         ..++.++|||||||++|+|++|++||.....      ..+...+......+
T Consensus       295 ~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~------~~~~~~i~~~~~~~  368 (446)
T 4ejn_A          295 LCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH------EKLFELILMEEIRF  368 (446)
T ss_dssp             CCCTTCC-----CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH------HHHHHHHHHCCCCC
T ss_pred             CceeccCCCcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCH------HHHHHHHHhCCCCC
Confidence            9853                         3478899999999999999999999964322      11222222233456


Q ss_pred             ChhhHHHHHHHHHHhhhcCCCccccc-----cHHHHHH
Q 005680          542 PLDLAEELAGIALKCLSADQDANRDL-----RIAGVMK  574 (683)
Q Consensus       542 p~~~~~~l~~Li~~CL~~dP~p~~RP-----s~~eVl~  574 (683)
                      |..+++.+.+||.+||+.|  |..||     ++.++++
T Consensus       369 p~~~~~~~~~li~~~L~~d--P~~R~~~~~~t~~ell~  404 (446)
T 4ejn_A          369 PRTLGPEAKSLLSGLLKKD--PKQRLGGGSEDAKEIMQ  404 (446)
T ss_dssp             CTTSCHHHHHHHHHHTCSS--TTTSTTCSTTTHHHHHT
T ss_pred             CccCCHHHHHHHHHHcccC--HHHhCCCCCCCHHHHHh
Confidence            7778899999999999999  88999     8888765

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=3.6e-36  Score=322.87  Aligned_cols=237  Identities=20%  Similarity=0.233  Sum_probs=183.9

Q ss_pred             ccccccCHHHHHHhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC-CCHHHHHHHHHHHHhcC-----CCCc
Q 005680          321 CAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-LSEEDFQAKVSFLTAVR-----HPHL  392 (683)
Q Consensus       321 ~~~~~~s~~ei~~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-~~~~~~~~Ev~iL~~l~-----HpnI  392 (683)
                      .....|++.+.....++|... +.+|.|+||.||+|.+  ++..||||++... .....+..|+.++..+.     ||||
T Consensus        20 ~~~~~~~~~~g~~~~~~y~~~-~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~h~~i   98 (360)
T 3llt_A           20 DEIVHFSWKKGMLLNNAFLVI-RKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSAKIEADILKKIQNDDINNNNI   98 (360)
T ss_dssp             CGGGSCCCCTTCEETTTEEEE-EEEEECSSEEEEEEEETTTCCEEEEEEECSCHHHHHHHHHHHHHHHHTCCCSTTGGGB
T ss_pred             ccceeeeeecceEecCEEEEE-EEEcccCCeEEEEEEECCCCeEEEEEEeccchhhhhhhHHHHHHHHHhcccCCCCCCe
Confidence            345566666666667777655 5668999999999998  6899999999732 23456788999999996     9999


Q ss_pred             cceeccccc--ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCC
Q 005680          393 VAVMGCCSE--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPS  470 (683)
Q Consensus       393 V~l~g~~~~--~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~  470 (683)
                      |++++++..  ..+|||||+ +++|.+++...        ....+++..+..|+.||+.||.|||+   .+|+||||||+
T Consensus        99 v~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~--------~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~  166 (360)
T 3llt_A           99 VKYHGKFMYYDHMCLIFEPL-GPSLYEIITRN--------NYNGFHIEDIKLYCIEILKALNYLRK---MSLTHTDLKPE  166 (360)
T ss_dssp             CCEEEEEEETTEEEEEECCC-CCBHHHHHHHT--------TTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGG
T ss_pred             ecccceeeECCeeEEEEcCC-CCCHHHHHHhc--------CCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCcc
Confidence            999999865  789999999 89999999533        23469999999999999999999999   67999999999


Q ss_pred             cccccC-------------------------CCcEEEecCCCccc----------------------cCCCcccccccHH
Q 005680          471 SILLDR-------------------------NLVAKISGLGLNIC----------------------DQLNVRSDIRAFG  503 (683)
Q Consensus       471 NILld~-------------------------~~~~KL~DFGla~~----------------------~~~t~ksDVwSlG  503 (683)
                      |||++.                         ++.+||+|||++..                      ..++.++||||||
T Consensus       167 NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG  246 (360)
T 3llt_A          167 NILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYHGSIINTRQYRAPEVILNLGWDVSSDMWSFG  246 (360)
T ss_dssp             GEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHH
T ss_pred             cEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCCCCcCccCcccccCcHHHcCCCCCCccchHHHH
Confidence            999975                         78999999999853                      3578999999999


Q ss_pred             HHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC----------------------CCCCCCh------------------
Q 005680          504 TLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG----------------------NAGIWPL------------------  543 (683)
Q Consensus       504 viL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~----------------------~~~~~p~------------------  543 (683)
                      |++|+|+||++||.........  ..+.....+                      ....+|.                  
T Consensus       247 ~il~ell~g~~pf~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  324 (360)
T 3llt_A          247 CVLAELYTGSLLFRTHEHMEHL--AMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLY  324 (360)
T ss_dssp             HHHHHHHHSSCSCCCSSHHHHH--HHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHH
T ss_pred             HHHHHHHHCCCCCCCCcHHHHH--HHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhccccc
Confidence            9999999999999642221000  000011000                      0001111                  


Q ss_pred             --hhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          544 --DLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       544 --~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                        ..++.+.+|+.+||+.|  |..|||+.++++
T Consensus       325 ~~~~~~~l~~li~~~L~~d--P~~Rpta~elL~  355 (360)
T 3llt_A          325 KIIKHELFCDFLYSILQID--PTLRPSPAELLK  355 (360)
T ss_dssp             HHCCCHHHHHHHHHHCCSS--GGGSCCHHHHTT
T ss_pred             ccchHHHHHHHHHHHhcCC--hhhCCCHHHHhc
Confidence              11267889999999999  889999999874

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=5.3e-36  Score=327.52  Aligned_cols=216  Identities=19%  Similarity=0.278  Sum_probs=177.7

Q ss_pred             ccccccccCCceEEEEEEE--CCeeEEEEEcCCCC--CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          340 ERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL--SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~--~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      ...+.+|.|+||.||+|..  +|..||+|++....  ....+.+|+.+|..++|||||++++++.+  ..+|||||++||
T Consensus        54 ~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~~~gg  133 (387)
T 1kob_A           54 DILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGG  133 (387)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECCCCC
T ss_pred             EEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEcCCCC
Confidence            3446778999999999998  68999999987432  33578899999999999999999999966  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC--CCcEEEecCCCccc-
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR--NLVAKISGLGLNIC-  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~--~~~~KL~DFGla~~-  490 (683)
                      +|.+++.         .....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.  ++.+||+|||++.. 
T Consensus       134 ~L~~~l~---------~~~~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~  201 (387)
T 1kob_A          134 ELFDRIA---------AEDYKMSEAEVINYMRQACEGLKHMHE---HSIVHLDIKPENIMCETKKASSVKIIDFGLATKL  201 (387)
T ss_dssp             BHHHHTT---------CTTCCBCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSTTCCCEEECCCTTCEEC
T ss_pred             cHHHHHH---------hhcCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecccchHHeEEecCCCCceEEEecccceec
Confidence            9999984         233469999999999999999999999   67999999999999974  47899999999853 


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC---CCCCCChh
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG---NAGIWPLD  544 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~---~~~~~p~~  544 (683)
                                             ..++.++|||||||++|+|+||.+||.....     ...+..+...   .....+..
T Consensus       202 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~-----~~~~~~i~~~~~~~~~~~~~~  276 (387)
T 1kob_A          202 NPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDD-----LETLQNVKRCDWEFDEDAFSS  276 (387)
T ss_dssp             CTTSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH-----HHHHHHHHHCCCCCCSSTTTT
T ss_pred             CCCcceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCH-----HHHHHHHHhCCCCCCcccccc
Confidence                                   2477899999999999999999999975322     1122222221   11222346


Q ss_pred             hHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          545 LAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +++.+.+||.+||..|  |..|||+.++++
T Consensus       277 ~s~~~~~li~~~L~~d--P~~Rpt~~ell~  304 (387)
T 1kob_A          277 VSPEAKDFIKNLLQKE--PRKRLTVHDALE  304 (387)
T ss_dssp             SCHHHHHHHHTTSCSS--GGGSCCHHHHHT
T ss_pred             CCHHHHHHHHHHcCCC--hhHCcCHHHHhh
Confidence            7889999999999999  889999999875

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=1.1e-35  Score=311.09  Aligned_cols=217  Identities=20%  Similarity=0.288  Sum_probs=182.8

Q ss_pred             ccccccccCCceEEEEEEE--CCeeEEEEEcCC---CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          340 ERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN---GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~---~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      ...+.+|.|+||.||+|..  +|..||||++..   ......+.+|+.++..++||||+++++++.+  ..++||||+++
T Consensus        25 ~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~  104 (303)
T 3a7i_A           25 TKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGG  104 (303)
T ss_dssp             EEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred             HHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEEeCCC
Confidence            3456778999999999998  589999999873   2345789999999999999999999999865  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      ++|.+++.           ...+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..  
T Consensus       105 ~~L~~~~~-----------~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~  170 (303)
T 3a7i_A          105 GSALDLLE-----------PGPLDETQIATILREILKGLDYLHS---EKKIHRDIKAANVLLSEHGEVKLADFGVAGQLT  170 (303)
T ss_dssp             EEHHHHHT-----------TSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECB
T ss_pred             CcHHHHHh-----------cCCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCChheEEECCCCCEEEeecccceecC
Confidence            99999983           3468999999999999999999999   6799999999999999999999999998742  


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHH
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAE  547 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~  547 (683)
                                             ..++.++||||||+++|+|++|.+||.....     ......+........+..++.
T Consensus       171 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  245 (303)
T 3a7i_A          171 DTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHP-----MKVLFLIPKNNPPTLEGNYSK  245 (303)
T ss_dssp             TTBCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH-----HHHHHHHHHSCCCCCCSSCCH
T ss_pred             ccccccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCH-----HHHHHHhhcCCCCCCccccCH
Confidence                                   2467899999999999999999999975322     112222333344455667888


Q ss_pred             HHHHHHHHhhhcCCCccccccHHHHHHHHH
Q 005680          548 ELAGIALKCLSADQDANRDLRIAGVMKELD  577 (683)
Q Consensus       548 ~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~  577 (683)
                      .+.+|+.+||+.|  |..|||+.++++..-
T Consensus       246 ~l~~li~~~l~~d--p~~Rps~~~ll~~~~  273 (303)
T 3a7i_A          246 PLKEFVEACLNKE--PSFRPTAKELLKHKF  273 (303)
T ss_dssp             HHHHHHHHHCCSS--GGGSCCHHHHTTCHH
T ss_pred             HHHHHHHHHcCCC--hhhCcCHHHHhhChh
Confidence            9999999999999  889999999987643

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=3.9e-36  Score=315.01  Aligned_cols=223  Identities=17%  Similarity=0.254  Sum_probs=178.3

Q ss_pred             hcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHH-HhcCCCCccceeccccc------ceeE
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFL-TAVRHPHLVAVMGCCSE------LKCI  405 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL-~~l~HpnIV~l~g~~~~------~~~L  405 (683)
                      .++|....+++|.|+||.||+|..  +|..||||++..   ...+.+|+.++ +.++||||+++++++.+      ..+|
T Consensus        16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~---~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~l   92 (299)
T 3m2w_A           16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD---CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLI   92 (299)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC---SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEE
T ss_pred             ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc---cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEE
Confidence            355666557789999999999998  689999999963   35678899988 55599999999998843      5789


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC---CCcEEE
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR---NLVAKI  482 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~---~~~~KL  482 (683)
                      ||||+++|+|.+++...        ....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.   ++.+||
T Consensus        93 v~e~~~~~~L~~~l~~~--------~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~~~kl  161 (299)
T 3m2w_A           93 VMECLDGGELFSRIQDR--------GDQAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKL  161 (299)
T ss_dssp             EECCCCSCBHHHHHHHC--------TTCCCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESSSSTTCCEEE
T ss_pred             EEeecCCCcHHHHHHhc--------cCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEecCCCCCcEEE
Confidence            99999999999999533        23469999999999999999999999   67999999999999998   789999


Q ss_pred             ecCCCccc---cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCC----hhhHHHHHHHHHH
Q 005680          483 SGLGLNIC---DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWP----LDLAEELAGIALK  555 (683)
Q Consensus       483 ~DFGla~~---~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p----~~~~~~l~~Li~~  555 (683)
                      +|||++..   ..++.++|||||||++|+|+||++||..........  .....+......++    ..+++.+.+|+.+
T Consensus       162 ~Dfg~a~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  239 (299)
T 3m2w_A          162 TDFGFAKETTGEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISP--GMKTRIRMGQYEFPNPEWSEVSEEVKMLIRN  239 (299)
T ss_dssp             CCCTTCEECTTCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------C--CSCCSSCTTCCSSCHHHHTTSCHHHHHHHHH
T ss_pred             eccccccccccccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhH--HHHHHHhhccccCCchhcccCCHHHHHHHHH
Confidence            99999965   678999999999999999999999996432210000  00001111112223    3467899999999


Q ss_pred             hhhcCCCccccccHHHHHHH
Q 005680          556 CLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       556 CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ||+.|  |..|||+.++++.
T Consensus       240 ~l~~d--P~~Rps~~e~l~h  257 (299)
T 3m2w_A          240 LLKTE--PTQRMTITEFMNH  257 (299)
T ss_dssp             HTCSS--TTTSCCHHHHHTS
T ss_pred             HcccC--hhhCCCHHHHhcC
Confidence            99999  8899999999864

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=8.4e-36  Score=325.86  Aligned_cols=230  Identities=21%  Similarity=0.279  Sum_probs=186.2

Q ss_pred             ccccccccCCceEEEEEEE--CCeeEEEEEcCC---CCCHHHHHHHHHHHHhcCCCCccceeccccc----ceeEEEeec
Q 005680          340 ERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN---GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE----LKCIVFEYM  410 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~---~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----~~~LV~Ey~  410 (683)
                      ...+++|+|+||.||+|.+  +|..||||++..   ......+.+|+.++++++|||||++++++.+    ..+|||||+
T Consensus        12 ~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~e~~   91 (396)
T 4eut_A           12 LLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFC   91 (396)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEECCC
T ss_pred             EEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEEecC
Confidence            4456788999999999998  489999999973   2345778899999999999999999999854    569999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccc----cCCCcEEEecCC
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL----DRNLVAKISGLG  486 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILl----d~~~~~KL~DFG  486 (683)
                      ++|+|.+++...       .....+++..++.|+.||+.||.|||+   .+|+||||||+|||+    +.++.+||+|||
T Consensus        92 ~~g~L~~~l~~~-------~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG  161 (396)
T 4eut_A           92 PCGSLYTVLEEP-------SNAYGLPESEFLIVLRDVVGGMNHLRE---NGIVHRNIKPGNIMRVIGEDGQSVYKLTDFG  161 (396)
T ss_dssp             TTEEHHHHTTSG-------GGTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEEECTTSCEEEEECCGG
T ss_pred             CCCCHHHHHHhh-------hcccCCCHHHHHHHHHHHHHHHHHHHH---CCEEECCcCHHHEEEeecCCCceeEEEecCC
Confidence            999999999543       233449999999999999999999999   679999999999999    788899999999


Q ss_pred             Cccc--------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHh
Q 005680          487 LNIC--------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVL  534 (683)
Q Consensus       487 la~~--------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~il  534 (683)
                      +++.                                ..++.++|||||||++|+|+||+.||....... .....+..++
T Consensus       162 ~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~-~~~~~~~~~~  240 (396)
T 4eut_A          162 AARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPR-RNKEVMYKII  240 (396)
T ss_dssp             GCEECCCGGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTT-TCHHHHHHHH
T ss_pred             CceEccCCCccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCccc-chHHHHHHHh
Confidence            9853                                124568999999999999999999996422111 1122222333


Q ss_pred             cCCC------------------------CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          535 DGNA------------------------GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       535 d~~~------------------------~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      .+..                        ...+..++..+.+++.+||+.|  |.+|||+.++++.+..+...
T Consensus       241 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~d--P~~R~s~~e~l~~l~~il~~  310 (396)
T 4eut_A          241 TGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEAD--QEKCWGFDQFFAETSDILHR  310 (396)
T ss_dssp             HSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCC--TTTSCCHHHHHHHHHHHHTC
T ss_pred             cCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccC--hhhhccHHHHHHHHHHHhhc
Confidence            2211                        1233568889999999999999  88999999999999988754

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=7.7e-36  Score=313.91  Aligned_cols=217  Identities=21%  Similarity=0.270  Sum_probs=175.1

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCC--CCCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEEeecCCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNN--GLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~--~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      .+++|+|+||.||+|..  +|..||||++..  ......+.+|+.++.++ +||||+++++++.+  ..|+||||+++|+
T Consensus        18 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   97 (316)
T 2ac3_A           18 EDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGS   97 (316)
T ss_dssp             CCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTCB
T ss_pred             CceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEEcCCCCc
Confidence            35689999999999997  689999999973  33457899999999985 79999999999965  7899999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc---EEEecCCCccc-
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV---AKISGLGLNIC-  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~---~KL~DFGla~~-  490 (683)
                      |.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.   +||+|||++.. 
T Consensus        98 L~~~l~----------~~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~  164 (316)
T 2ac3_A           98 ILSHIH----------KRRHFNELEASVVVQDVASALDFLHN---KGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGI  164 (316)
T ss_dssp             HHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC--
T ss_pred             HHHHHh----------ccCCCCHHHHHHHHHHHHHHHHHHHh---CCceeCCCCHHHEEEccCCCcCceEEEEccCcccc
Confidence            999994          34579999999999999999999999   67999999999999988765   99999998742 


Q ss_pred             ------------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHH---------hh-
Q 005680          491 ------------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKA---------MA-  524 (683)
Q Consensus       491 ------------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~---------~~-  524 (683)
                                                          ..++.++|||||||++|+|++|++||......         .. 
T Consensus       165 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~  244 (316)
T 2ac3_A          165 KLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPA  244 (316)
T ss_dssp             -----------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHH
T ss_pred             ccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchh
Confidence                                                12577899999999999999999999642110         00 


Q ss_pred             hhHHHHHHHhcCCCCCCCh----hhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          525 LDQTTLMQVLDGNAGIWPL----DLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       525 ~~~~~~~~ild~~~~~~p~----~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ........+.. ....+|.    .++..+.+|+.+||+.|  |..|||+.++++
T Consensus       245 ~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~Rps~~e~l~  295 (316)
T 2ac3_A          245 CQNMLFESIQE-GKYEFPDKDWAHISCAAKDLISKLLVRD--AKQRLSAAQVLQ  295 (316)
T ss_dssp             HHHHHHHHHHH-CCCCCCHHHHTTSCHHHHHHHHHHSCSS--TTTSCCHHHHHH
T ss_pred             HHHHHHHHHhc-cCcccCchhcccCCHHHHHHHHHHhhCC--hhhCCCHHHHhc
Confidence            01111222222 2233342    46788999999999999  889999999876

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=6.3e-36  Score=310.98  Aligned_cols=232  Identities=14%  Similarity=0.183  Sum_probs=183.6

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccccc---ceeEEEeec
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE---LKCIVFEYM  410 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~---~~~LV~Ey~  410 (683)
                      ++|.. .+.+|+|+||.||+|..  +|+.||||++........+.+|+.++..++|++++..++++..   ..++||||+
T Consensus         9 ~~y~~-~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~   87 (296)
T 3uzp_A            9 NRYRL-GRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL   87 (296)
T ss_dssp             TTEEE-EEEEEEETTEEEEEEEETTTTEEEEEEEEESCSSCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC
T ss_pred             cEEEE-EEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcchhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEEec
Confidence            44543 46678999999999997  7899999998865556789999999999999998887777633   679999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccc---cCCCcEEEecCCC
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL---DRNLVAKISGLGL  487 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILl---d~~~~~KL~DFGl  487 (683)
                       +++|.+++..         ....+++..++.++.||+.||.|||+   .+|+||||||+|||+   +.++.+||+|||+
T Consensus        88 -~~~L~~~~~~---------~~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~  154 (296)
T 3uzp_A           88 -GPSLEDLFNF---------CSRKFSLKTVLLLADQMISRIEYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGL  154 (296)
T ss_dssp             -CCBHHHHHHH---------TTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECCGGGTTCEEECCCTT
T ss_pred             -CCCHHHHHHh---------hccCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHeEEecCCCCCeEEEeeCCC
Confidence             8999999942         34569999999999999999999999   679999999999999   4889999999998


Q ss_pred             ccc--------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhh--hhHHHHHHH
Q 005680          488 NIC--------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMA--LDQTTLMQV  533 (683)
Q Consensus       488 a~~--------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~--~~~~~~~~i  533 (683)
                      +..                                ..++.++|||||||++|+|++|+.||........  .........
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~  234 (296)
T 3uzp_A          155 AKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKK  234 (296)
T ss_dssp             CEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccc
Confidence            742                                2357789999999999999999999974221100  000011111


Q ss_pred             hcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          534 LDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       534 ld~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      ........+..+++.+.+|+.+||+.|  |..|||+.+|++.|+.+....
T Consensus       235 ~~~~~~~~~~~~~~~l~~li~~~l~~d--p~~Rps~~~l~~~l~~~~~~~  282 (296)
T 3uzp_A          235 MSTPIEVLCKGYPSEFATYLNFCRSLR--FDDKPDYSYLRQLFRNLFHRQ  282 (296)
T ss_dssp             HHSCHHHHTTTSCHHHHHHHHHHHTSC--TTCCCCHHHHHHHHHHHHHHT
T ss_pred             cCCchHHHHhhCCHHHHHHHHHHHhcC--cCcCCCHHHHHHHHHHHHHhc
Confidence            111111122356788999999999999  889999999999999997654

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=7.5e-36  Score=334.90  Aligned_cols=214  Identities=23%  Similarity=0.302  Sum_probs=180.9

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      ..+.+|.|+||.||+|..  +|..||||++..     ......+.+|+.+++.++||||+++++++.+  ..||||||++
T Consensus        20 l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~E~~~   99 (476)
T 2y94_A           20 LGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVS   99 (476)
T ss_dssp             EEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCS
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCC
Confidence            346778999999999998  689999999862     2335678999999999999999999999965  7899999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      ||+|.+++          .....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++.. 
T Consensus       100 gg~L~~~l----------~~~~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDLkp~NIll~~~~~vkL~DFG~a~~~  166 (476)
T 2y94_A          100 GGELFDYI----------CKNGRLDEKESRRLFQQILSGVDYCHR---HMVVHRDLKPENVLLDAHMNAKIADFGLSNMM  166 (476)
T ss_dssp             SEEHHHHT----------TSSSSCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCSGGGEEECTTCCEEECCCSSCEEC
T ss_pred             CCcHHHHH----------HhcCCCCHHHHHHHHHHHHHHHHHHHH---CCCCcccccHHHEEEecCCCeEEEeccchhhc
Confidence            99999999          345679999999999999999999999   6799999999999999999999999999853 


Q ss_pred             -----------------------cC-CCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhH
Q 005680          491 -----------------------DQ-LNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLA  546 (683)
Q Consensus       491 -----------------------~~-~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~  546 (683)
                                             .. .+.++|||||||++|+|++|++||.....     ......+... ....|..++
T Consensus       167 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~-----~~~~~~i~~~-~~~~p~~~s  240 (476)
T 2y94_A          167 SDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHV-----PTLFKKICDG-IFYTPQYLN  240 (476)
T ss_dssp             CTTCCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSS-----HHHHHHHHTT-CCCCCTTCC
T ss_pred             cccccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCH-----HHHHHHHhcC-CcCCCccCC
Confidence                                   11 36789999999999999999999974221     1222333333 334566778


Q ss_pred             HHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          547 EELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       547 ~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      +.+.+|+.+||..|  |..|||+.++++.
T Consensus       241 ~~~~~Li~~~L~~d--P~~Rpt~~eil~h  267 (476)
T 2y94_A          241 PSVISLLKHMLQVD--PMKRATIKDIREH  267 (476)
T ss_dssp             HHHHHHHHHHTCSS--TTTSCCHHHHHTC
T ss_pred             HHHHHHHHHHcCCC--chhCcCHHHHHhC
Confidence            89999999999999  8899999999874

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=320.90  Aligned_cols=215  Identities=19%  Similarity=0.223  Sum_probs=170.1

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC-C---HHHHHHHHHHHHhc-CCCCccceeccccc--ceeEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-S---EEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-~---~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV  406 (683)
                      ++|... +.+|.|+||.||+|.+  +|+.||||++.... .   ...+..|+..+.++ +|||||+++++|.+  ..+||
T Consensus        57 ~~y~~~-~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv  135 (311)
T 3p1a_A           57 QSFQRL-SRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQ  135 (311)
T ss_dssp             HHEEEE-EEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hheeee-heeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEE
Confidence            445443 5678999999999998  58999999986322 2   23455666666665 89999999999966  78999


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      |||+ +|+|.+++..         ....+++..++.|+.||+.||.|||+   .+|+||||||+||||+.++.+||+|||
T Consensus       136 ~e~~-~~~L~~~~~~---------~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kl~DFG  202 (311)
T 3p1a_A          136 TELC-GPSLQQHCEA---------WGASLPEAQVWGYLRDTLLALAHLHS---QGLVHLDVKPANIFLGPRGRCKLGDFG  202 (311)
T ss_dssp             EECC-CCBHHHHHHH---------HCSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECGGGCEEECCCT
T ss_pred             Eecc-CCCHHHHHHh---------cCCCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEECCCCCEEEccce
Confidence            9999 6799998853         33569999999999999999999999   679999999999999999999999999


Q ss_pred             Cccc-----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCC-CCCCC
Q 005680          487 LNIC-----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGN-AGIWP  542 (683)
Q Consensus       487 la~~-----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~-~~~~p  542 (683)
                      ++..                       +.++.++|||||||++|+|++|.+|+.....        ...+.... ...++
T Consensus       203 ~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~--------~~~~~~~~~~~~~~  274 (311)
T 3p1a_A          203 LLVELGTAGAGEVQEGDPRYMAPELLQGSYGTAADVFSLGLTILEVACNMELPHGGEG--------WQQLRQGYLPPEFT  274 (311)
T ss_dssp             TCEECC------CCCCCGGGCCGGGGGTCCSTHHHHHHHHHHHHHHHHTCCCCSSHHH--------HHHHTTTCCCHHHH
T ss_pred             eeeecccCCCCcccCCCccccCHhHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCccH--------HHHHhccCCCcccc
Confidence            9743                       3467899999999999999999765543221        11222211 11223


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ..+++.+.+|+.+||+.|  |..|||+.++++
T Consensus       275 ~~~~~~l~~li~~~L~~d--P~~Rpt~~ell~  304 (311)
T 3p1a_A          275 AGLSSELRSVLVMMLEPD--PKLRATAEALLA  304 (311)
T ss_dssp             TTSCHHHHHHHHHHSCSS--TTTSCCHHHHHT
T ss_pred             cCCCHHHHHHHHHHcCCC--hhhCcCHHHHHh
Confidence            356789999999999999  889999999875

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=1.3e-35  Score=314.15  Aligned_cols=214  Identities=21%  Similarity=0.261  Sum_probs=177.6

Q ss_pred             ccccccccCCceEEEEEEE--CCeeEEEEEcCCCC--------CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEE
Q 005680          340 ERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL--------SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVF  407 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~--------~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~  407 (683)
                      ...+.+|.|+||.||+|..  +|..||||++....        ....+.+|+.++.+++||||+++++++.+  ..++||
T Consensus        15 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   94 (321)
T 2a2a_A           15 DIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVVLIL   94 (321)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             EEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEEEE
Confidence            3446778999999999998  58999999987221        35779999999999999999999999966  789999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCC----cEEEe
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL----VAKIS  483 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~----~~KL~  483 (683)
                      ||+++|+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++    .+||+
T Consensus        95 e~~~~~~L~~~l~----------~~~~~~~~~~~~i~~qi~~aL~~lH~---~~ivH~dikp~NIl~~~~~~~~~~~kl~  161 (321)
T 2a2a_A           95 ELVSGGELFDFLA----------QKESLSEEEATSFIKQILDGVNYLHT---KKIAHFDLKPENIMLLDKNIPIPHIKLI  161 (321)
T ss_dssp             CCCCSCBHHHHHH----------TCSCEEHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCTTSSSCCEEEC
T ss_pred             EcCCCCcHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCChHHEEEecCCCCcCCEEEc
Confidence            9999999999993          44578999999999999999999999   6799999999999999887    79999


Q ss_pred             cCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCC
Q 005680          484 GLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG  539 (683)
Q Consensus       484 DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~  539 (683)
                      |||++..                        ..++.++|||||||++|+|++|..||.....     ...+..+... ..
T Consensus       162 Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-----~~~~~~i~~~-~~  235 (321)
T 2a2a_A          162 DFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK-----QETLANITSV-SY  235 (321)
T ss_dssp             CCTTCEECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH-----HHHHHHHHTT-CC
T ss_pred             cCccceecCccccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCH-----HHHHHHHHhc-cc
Confidence            9999843                        3467899999999999999999999964322     1222222222 22


Q ss_pred             CCC----hhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          540 IWP----LDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       540 ~~p----~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .++    ..++..+.+|+.+||+.|  |..|||+.+++.
T Consensus       236 ~~~~~~~~~~~~~~~~li~~~l~~d--p~~Rps~~e~l~  272 (321)
T 2a2a_A          236 DFDEEFFSHTSELAKDFIRKLLVKE--TRKRLTIQEALR  272 (321)
T ss_dssp             CCCHHHHTTCCHHHHHHHHTTSCSS--TTTSCCHHHHHH
T ss_pred             ccChhhhcccCHHHHHHHHHHcCCC--hhhCcCHHHHhc
Confidence            222    346788999999999999  889999999875

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=7.9e-36  Score=310.69  Aligned_cols=216  Identities=19%  Similarity=0.305  Sum_probs=173.3

Q ss_pred             ccccccCCceEEEEEEE-CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          342 FRLKCAGDWTNVYRGRL-NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~-~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      .+.+|+|+||.||+|.. +|..||||++....    ....+.+|+.++++++|||||++++++.+  ..++||||+++ +
T Consensus         7 ~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~   85 (288)
T 1ob3_A            7 LEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQ-D   85 (288)
T ss_dssp             EEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECCSE-E
T ss_pred             hhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEecCC-C
Confidence            35678999999999998 58999999987322    23678899999999999999999999965  78999999984 9


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++..         ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..    
T Consensus        86 l~~~~~~---------~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  153 (288)
T 1ob3_A           86 LKKLLDV---------CEGGLESVTAKSFLLQLLNGIAYCHD---RRVLHRDLKPQNLLINREGELKIADFGLARAFGIP  153 (288)
T ss_dssp             HHHHHHT---------STTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-
T ss_pred             HHHHHHh---------cccCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCCEEEeECccccccCcc
Confidence            9998842         33568999999999999999999999   6799999999999999999999999998732    


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhc-CCCC--------
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLD-GNAG--------  539 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild-~~~~--------  539 (683)
                                            ..++.++|||||||++|+|+||++||.........  ..+...+. +...        
T Consensus       154 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  231 (288)
T 1ob3_A          154 VRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQL--MRIFRILGTPNSKNWPNVTEL  231 (288)
T ss_dssp             --------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH--HHHHHHHCCCCTTTSTTGGGS
T ss_pred             ccccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHH--HHHHHHHCCCChhhchhhhcc
Confidence                                  23688999999999999999999999653221100  01111110 0000        


Q ss_pred             ----------------CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          540 ----------------IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       540 ----------------~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                                      .....+++.+.+|+.+||+.|  |..|||+.++++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~Rpt~~e~l~  280 (288)
T 1ob3_A          232 PKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLD--PNQRITAKQALE  280 (288)
T ss_dssp             TTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSS--TTTSCCHHHHHT
T ss_pred             cccccccccccCccHHHHhhhcCHHHHHHHHHHcCCC--cccCCCHHHHhc
Confidence                            112346789999999999999  889999999875

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=1.8e-35  Score=314.21  Aligned_cols=231  Identities=20%  Similarity=0.261  Sum_probs=182.9

Q ss_pred             hhcCccccccccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHh--cCCCCccceeccccc------ceeE
Q 005680          334 ATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTA--VRHPHLVAVMGCCSE------LKCI  405 (683)
Q Consensus       334 at~~F~~~~~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~--l~HpnIV~l~g~~~~------~~~L  405 (683)
                      ..++|.. .+.+|+|+||.||+|.++|+.||||++... ....+.+|+.++..  ++||||+++++++.+      ..++
T Consensus        40 ~~~~y~~-~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~-~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~l  117 (342)
T 1b6c_B           40 IARTIVL-QESIGKGRFGEVWRGKWRGEEVAVKIFSSR-EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWL  117 (342)
T ss_dssp             HHHHCEE-EEEEEEETTEEEEEEEETTEEEEEEEECGG-GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEEE
T ss_pred             ccccEEE-EeeecCCCCcEEEEEEEcCccEEEEEeCch-hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeEE
Confidence            3445544 456789999999999999999999999633 45678889999987  799999999999854      5789


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhc--------cCCCCcEEeccCCCCcccccCC
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLH--------STEPRPIVHGSLTPSSILLDRN  477 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH--------~~~~~~IiHrDLKP~NILld~~  477 (683)
                      ||||+++|+|.+++.           ...+++..++.++.||+.||.|||        +   .+|+||||||+||||+.+
T Consensus       118 v~e~~~~g~L~~~l~-----------~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~---~~ivH~Dlkp~NIll~~~  183 (342)
T 1b6c_B          118 VSDYHEHGSLFDYLN-----------RYTVTVEGMIKLALSTASGLAHLHMEIVGTQGK---PAIAHRDLKSKNILVKKN  183 (342)
T ss_dssp             EECCCTTCBHHHHHH-----------HCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCB---CEEECSCCSGGGEEECTT
T ss_pred             EEeecCCCcHHHHHh-----------ccCccHHHHHHHHHHHHHHHHHHHHHHhhhccc---CCeeeCCCCHHHEEECCC
Confidence            999999999999993           235899999999999999999999        6   779999999999999999


Q ss_pred             CcEEEecCCCccc----------------------------c-------CCCcccccccHHHHHHHHhhC----------
Q 005680          478 LVAKISGLGLNIC----------------------------D-------QLNVRSDIRAFGTLLLHLLTG----------  512 (683)
Q Consensus       478 ~~~KL~DFGla~~----------------------------~-------~~t~ksDVwSlGviL~eLltG----------  512 (683)
                      +.+||+|||++..                            .       .++.++|||||||++|+|+||          
T Consensus       184 ~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~  263 (342)
T 1b6c_B          184 GTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDY  263 (342)
T ss_dssp             SCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCC
T ss_pred             CCEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCccccc
Confidence            9999999999742                            0       122689999999999999999          


Q ss_pred             CCCchhhHHHhhhhHHHHHHHhcC-CCCCCC-----hhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          513 RNWAGLVEKAMALDQTTLMQVLDG-NAGIWP-----LDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       513 ~~Pf~~~~~~~~~~~~~~~~ild~-~~~~~p-----~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      ..||................+... ..+..|     ..++..+.+|+.+||+.|  |..|||+.+|++.|+.+...
T Consensus       264 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~d--p~~Rps~~~i~~~L~~i~~~  337 (342)
T 1b6c_B          264 QLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYAN--GAARLTALRIKKTLSQLSQQ  337 (342)
T ss_dssp             CCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGTSHHHHHHHHHHHHHCCSS--GGGSCCHHHHHHHHHHHHHT
T ss_pred             ccCccccCcCcccHHHHHHHHHHHHhCCCCcccccchhHHHHHHHHHHHHhccC--hhhCCCHHHHHHHHHHHHHH
Confidence            667653211000111112222222 223333     256789999999999999  88999999999999999764

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=4.1e-36  Score=326.82  Aligned_cols=218  Identities=22%  Similarity=0.258  Sum_probs=172.4

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHH-HHhcCCCCccceeccccc--ceeE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSF-LTAVRHPHLVAVMGCCSE--LKCI  405 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~i-L~~l~HpnIV~l~g~~~~--~~~L  405 (683)
                      ++|.. .+++|+|+||.||+|..  ++..||||++...     .....+..|..+ ++.++|||||+++++|.+  ..||
T Consensus        38 ~~y~~-~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l  116 (373)
T 2r5t_A           38 SDFHF-LKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF  116 (373)
T ss_dssp             GGEEE-EEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred             hheEE-EEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence            45543 46788999999999998  5789999999722     223456777776 577899999999999976  7899


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecC
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGL  485 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DF  485 (683)
                      ||||++||+|.+++.          ....+++..+..|+.||+.||.|||+   .+|+||||||+||||+.+|.+||+||
T Consensus       117 v~E~~~gg~L~~~l~----------~~~~~~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NIll~~~g~ikL~DF  183 (373)
T 2r5t_A          117 VLDYINGGELFYHLQ----------RERCFLEPRARFYAAEIASALGYLHS---LNIVYRDLKPENILLDSQGHIVLTDF  183 (373)
T ss_dssp             EEECCCSCBHHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCC
T ss_pred             EEeCCCCCcHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCHHHEEECCCCCEEEeeC
Confidence            999999999999994          44578999999999999999999999   67999999999999999999999999


Q ss_pred             CCccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCC
Q 005680          486 GLNIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGI  540 (683)
Q Consensus       486 Gla~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~  540 (683)
                      |+++.                         ..++.++|||||||++|||++|.+||.....     ...+..++.. ...
T Consensus       184 G~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~-----~~~~~~i~~~-~~~  257 (373)
T 2r5t_A          184 GLCKENIEHNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNT-----AEMYDNILNK-PLQ  257 (373)
T ss_dssp             CBCGGGBCCCCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBH-----HHHHHHHHHS-CCC
T ss_pred             ccccccccCCCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCH-----HHHHHHHHhc-ccC
Confidence            99853                         2468899999999999999999999964221     2223333333 334


Q ss_pred             CChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          541 WPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       541 ~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ++..++..+.+|+.+||+.|  |.+||++.+.+..
T Consensus       258 ~~~~~~~~~~~li~~lL~~d--p~~R~~~~~~~~~  290 (373)
T 2r5t_A          258 LKPNITNSARHLLEGLLQKD--RTKRLGAKDDFME  290 (373)
T ss_dssp             CCSSSCHHHHHHHHHHTCSS--GGGSTTTTTTHHH
T ss_pred             CCCCCCHHHHHHHHHHcccC--HHhCCCCCCCHHH
Confidence            56678899999999999999  8899998654443

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=1.5e-35  Score=313.55  Aligned_cols=221  Identities=19%  Similarity=0.290  Sum_probs=167.4

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC---CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG---LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~---~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      .+.+|+|+||.||+|..  +|..||||++...   .....+.+|+.++++++|||||++++++.+  ..+|||||++ |+
T Consensus        10 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~-~~   88 (317)
T 2pmi_A           10 LEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFEFMD-ND   88 (317)
T ss_dssp             ---------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEECCC-CB
T ss_pred             eeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEEecC-CC
Confidence            35678999999999987  5899999998732   234678999999999999999999999966  7899999998 69


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++......    .....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..    
T Consensus        89 L~~~l~~~~~~----~~~~~~~~~~~~~~~~qi~~aL~~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~  161 (317)
T 2pmi_A           89 LKKYMDSRTVG----NTPRGLELNLVKYFQWQLLQGLAFCHE---NKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIP  161 (317)
T ss_dssp             HHHHHHHHHSS----SCCCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCSSCEETTSC
T ss_pred             HHHHHHhcccc----ccccCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCChHHeEEcCCCCEEECcCccceecCCC
Confidence            99998643210    123469999999999999999999999   6799999999999999999999999998742    


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC-CC---------
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG-NA---------  538 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~-~~---------  538 (683)
                                            ..++.++|||||||++|+|+||++||.........  ..+...... ..         
T Consensus       162 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~  239 (317)
T 2pmi_A          162 VNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQL--KLIFDIMGTPNESLWPSVTKL  239 (317)
T ss_dssp             CCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH--HHHHHHHCSCCTTTCGGGGGC
T ss_pred             cccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHH--HHHHHHhCCCChhHhhhhhhh
Confidence                                  23688999999999999999999999643221000  011111100 00         


Q ss_pred             --------------------CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          539 --------------------GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       539 --------------------~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                                          ...+..++..+.+|+.+||+.|  |..|||+.++++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d--P~~Rpt~~e~l~  293 (317)
T 2pmi_A          240 PKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLN--PDMRLSAKQALH  293 (317)
T ss_dssp             TTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSS--GGGSCCHHHHTT
T ss_pred             hhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCC--cccCCCHHHHhC
Confidence                                0011245678999999999999  889999998875

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=8.8e-36  Score=326.77  Aligned_cols=225  Identities=17%  Similarity=0.235  Sum_probs=177.0

Q ss_pred             hcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCCccceeccccc------ceeE
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE------LKCI  405 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~------~~~L  405 (683)
                      .++|....+++|.|+||.||+|..  +|..||||++..   ...+.+|+.++.++ +|||||+++++|..      ..||
T Consensus        60 ~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~---~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~l  136 (400)
T 1nxk_A           60 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD---CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLI  136 (400)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC---SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEE
T ss_pred             cccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc---chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEE
Confidence            345555556789999999999998  589999999963   25678899987554 89999999998743      5799


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC---CCcEEE
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR---NLVAKI  482 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~---~~~~KL  482 (683)
                      |||||+||+|.+++...        ....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.   ++.+||
T Consensus       137 v~E~~~gg~L~~~l~~~--------~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~~~~kl  205 (400)
T 1nxk_A          137 VMECLDGGELFSRIQDR--------GDQAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKL  205 (400)
T ss_dssp             EEECCCSEEHHHHHHCC-----------CCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSTTCCEEE
T ss_pred             EEEeCCCCcHHHHHHHh--------CCCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCcCcceEEEecCCCCccEEE
Confidence            99999999999999532        23469999999999999999999999   67999999999999987   789999


Q ss_pred             ecCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCC-
Q 005680          483 SGLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGN-  537 (683)
Q Consensus       483 ~DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~-  537 (683)
                      +|||+++.                        ..++.++|||||||++|+|++|++||....... ........+.... 
T Consensus       206 ~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~~~~~i~~~~~  284 (400)
T 1nxk_A          206 TDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLA-ISPGMKTRIRMGQY  284 (400)
T ss_dssp             CCCTTCEECC-----------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCS-SCCSHHHHHHHTCC
T ss_pred             EecccccccCCCCccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCcccc-ccHHHHHHHHcCcc
Confidence            99999853                        347889999999999999999999996432210 0011111222211 


Q ss_pred             --CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHH
Q 005680          538 --AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       538 --~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                        .......++..+.+||.+||..|  |..|||+.+++..-
T Consensus       285 ~~~~~~~~~~s~~~~~li~~~L~~d--P~~Rpt~~eil~hp  323 (400)
T 1nxk_A          285 EFPNPEWSEVSEEVKMLIRNLLKTE--PTQRMTITEFMNHP  323 (400)
T ss_dssp             CCCTTTTTTSCHHHHHHHHTTSCSS--GGGSCCHHHHHHSH
T ss_pred             cCCCcccccCCHHHHHHHHHHCCCC--hhHCcCHHHHhcCc
Confidence              11111357889999999999999  88999999998753

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=7.7e-36  Score=314.50  Aligned_cols=219  Identities=25%  Similarity=0.356  Sum_probs=175.0

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcCCCC--C---HHHHHHHHHHHHhcCCCCccceeccccc------ceeEEE
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL--S---EEDFQAKVSFLTAVRHPHLVAVMGCCSE------LKCIVF  407 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~--~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~------~~~LV~  407 (683)
                      ..+.+|.|+||.||+|.+  +|+.||||++....  .   ...+.+|+.++.+++|||||++++++..      ..|+||
T Consensus        16 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~lv~   95 (311)
T 3ork_A           16 LGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVM   95 (311)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcccEEEE
Confidence            346778999999999997  68999999997432  2   2468899999999999999999999865      239999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCC
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL  487 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGl  487 (683)
                      ||++||+|.+++.          ....+++..++.++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+
T Consensus        96 e~~~g~~L~~~l~----------~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~  162 (311)
T 3ork_A           96 EYVDGVTLRDIVH----------TEGPMTPKRAIEVIADACQALNFSHQ---NGIIHRDVKPANIMISATNAVKVMDFGI  162 (311)
T ss_dssp             ECCCEEEHHHHHH----------HHCSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEETTSCEEECCCSC
T ss_pred             ecCCCCCHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCCCcCCCCHHHEEEcCCCCEEEeeccC
Confidence            9999999999994          34579999999999999999999999   6799999999999999999999999999


Q ss_pred             ccc----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCC
Q 005680          488 NIC----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG  539 (683)
Q Consensus       488 a~~----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~  539 (683)
                      +..                            ..++.++|||||||++|+|+||++||......     ............
T Consensus       163 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~-----~~~~~~~~~~~~  237 (311)
T 3ork_A          163 ARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPV-----SVAYQHVREDPI  237 (311)
T ss_dssp             C------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH-----HHHHHHHHCCCC
T ss_pred             cccccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChH-----HHHHHHhcCCCC
Confidence            742                            24678999999999999999999999653221     111122221111


Q ss_pred             C---CChhhHHHHHHHHHHhhhcCCCccccccHHHHH-HHHHHH
Q 005680          540 I---WPLDLAEELAGIALKCLSADQDANRDLRIAGVM-KELDEV  579 (683)
Q Consensus       540 ~---~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl-~~L~~l  579 (683)
                      .   .+..++..+.+|+.+||+.|  |.+||++.+++ ..|..+
T Consensus       238 ~~~~~~~~~~~~l~~li~~~l~~d--P~~R~~~~~~l~~~l~~~  279 (311)
T 3ork_A          238 PPSARHEGLSADLDAVVLKALAKN--PENRYQTAAEMRADLVRV  279 (311)
T ss_dssp             CHHHHSTTCCHHHHHHHHHHTCSS--GGGSCSSHHHHHHHHHHH
T ss_pred             CcccccCCCCHHHHHHHHHHHhcC--HhhChhhHHHHHHHHHHH
Confidence            1   12246789999999999999  88999765554 455444

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=6.2e-36  Score=325.26  Aligned_cols=226  Identities=19%  Similarity=0.229  Sum_probs=174.7

Q ss_pred             cCccccccccccC--CceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc--ceeE
Q 005680          336 EDFSERFRLKCAG--DWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCI  405 (683)
Q Consensus       336 ~~F~~~~~liG~G--~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~L  405 (683)
                      ++| ...+.+|+|  +||.||+|..  +|..||||++....    ....+.+|+.+++.++|||||+++++|.+  ..||
T Consensus        25 ~~y-~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l  103 (389)
T 3gni_B           25 GCY-ELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV  103 (389)
T ss_dssp             GGE-EEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             CcE-EEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEE
Confidence            344 334677899  9999999998  58999999997322    23567889999999999999999999966  7899


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecC
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGL  485 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DF  485 (683)
                      ||||+++|+|.+++...        ....+++..+..|+.||+.||.|||+   .+|+||||||+||||+.++.+||+||
T Consensus       104 v~e~~~~~~L~~~l~~~--------~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~NIll~~~~~~kl~df  172 (389)
T 3gni_B          104 VTSFMAYGSAKDLICTH--------FMDGMNELAIAYILQGVLKALDYIHH---MGYVHRSVKASHILISVDGKVYLSGL  172 (389)
T ss_dssp             EEECCTTCBHHHHHHHT--------CTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCG
T ss_pred             EEEccCCCCHHHHHhhh--------cccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEccc
Confidence            99999999999999533        23569999999999999999999999   67999999999999999999999999


Q ss_pred             CCccc----------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhh---hHH
Q 005680          486 GLNIC----------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMAL---DQT  528 (683)
Q Consensus       486 Gla~~----------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~---~~~  528 (683)
                      |++..                                  ..++.++|||||||++|+|++|++||.........   ...
T Consensus       173 g~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~  252 (389)
T 3gni_B          173 RSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNG  252 (389)
T ss_dssp             GGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC---
T ss_pred             ccceeeccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcC
Confidence            87521                                  24788999999999999999999999642210000   000


Q ss_pred             HHHHHhc-------------------------------------CCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHH
Q 005680          529 TLMQVLD-------------------------------------GNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAG  571 (683)
Q Consensus       529 ~~~~ild-------------------------------------~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~e  571 (683)
                      ....+.+                                     .....++..+++.+.+|+.+||+.|  |.+|||+.+
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~d--P~~Rpta~e  330 (389)
T 3gni_B          253 TVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRN--PDARPSAST  330 (389)
T ss_dssp             -----------------------------------------------------CCHHHHHHHHHHTCSC--TTTSCCHHH
T ss_pred             CCCccccccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcC--cccCCCHHH
Confidence            0000000                                     0011234456788999999999999  889999999


Q ss_pred             HHHH
Q 005680          572 VMKE  575 (683)
Q Consensus       572 Vl~~  575 (683)
                      +++.
T Consensus       331 ll~h  334 (389)
T 3gni_B          331 LLNH  334 (389)
T ss_dssp             HTTS
T ss_pred             HhcC
Confidence            8753

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=1.1e-35  Score=309.80  Aligned_cols=214  Identities=20%  Similarity=0.290  Sum_probs=179.7

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      ..+++|+|+||.||+|..  ++..||+|++...     ...+.+.+|+.+++.++||||+++++++.+  ..++||||++
T Consensus        19 ~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   98 (294)
T 2rku_A           19 RGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCR   98 (294)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCT
T ss_pred             EEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEEecCC
Confidence            346778999999999998  5789999998632     123578899999999999999999999966  6899999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      +++|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++.. 
T Consensus        99 ~~~L~~~~~----------~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~  165 (294)
T 2rku_A           99 RRSLLELHK----------RRKALTEPEARYYLRQIVLGCQYLHR---NRVIHRDLKLGNLFLNEDLEVKIGDFGLATKV  165 (294)
T ss_dssp             TCBHHHHHH----------HHCSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             CCCHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChHhEEEcCCCCEEEEeccCceec
Confidence            999999883          44579999999999999999999999   6799999999999999999999999999743 


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhH
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLA  546 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~  546 (683)
                                              ..++.++||||||+++|+|++|+.||.....     ......+. ......|..++
T Consensus       166 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~-----~~~~~~~~-~~~~~~~~~~~  239 (294)
T 2rku_A          166 EYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCL-----KETYLRIK-KNEYSIPKHIN  239 (294)
T ss_dssp             CSTTCCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHHHH-TTCCCCCTTSC
T ss_pred             ccCccccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHHh-hccCCCccccC
Confidence                                    2367799999999999999999999965322     11122222 22344566788


Q ss_pred             HHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          547 EELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       547 ~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ..+.+|+.+||+.|  |..|||+.++++.
T Consensus       240 ~~~~~li~~~l~~~--p~~Rps~~~ll~~  266 (294)
T 2rku_A          240 PVAASLIQKMLQTD--PTARPTINELLND  266 (294)
T ss_dssp             HHHHHHHHHHTCSS--GGGSCCGGGGGGS
T ss_pred             HHHHHHHHHHcccC--hhhCcCHHHHhhC
Confidence            89999999999999  8899999999875

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=1.3e-35  Score=320.00  Aligned_cols=231  Identities=14%  Similarity=0.114  Sum_probs=178.1

Q ss_pred             cCccccccccccCCceEEEEEEEC-------CeeEEEEEcCCCCC-------------HHHHHHHHHHHHhcCCCCccce
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRLN-------HASVAIKTLNNGLS-------------EEDFQAKVSFLTAVRHPHLVAV  395 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~~-------g~~VAvK~l~~~~~-------------~~~~~~Ev~iL~~l~HpnIV~l  395 (683)
                      ++|.. .+.+|+|+||.||+|.+.       +..||||++.....             ...+..|+..+..++|||||++
T Consensus        35 ~~y~~-~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~  113 (364)
T 3op5_A           35 AAWKV-GLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY  113 (364)
T ss_dssp             CEEEE-EEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred             CeEEE-EEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence            34543 467789999999999882       47899999864321             1223445566677789999999


Q ss_pred             eccccc------ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCC
Q 005680          396 MGCCSE------LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTP  469 (683)
Q Consensus       396 ~g~~~~------~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP  469 (683)
                      ++++.+      ..||||||+ ||+|.+++..         ....+++..++.|+.||+.||.|||+   .+|+||||||
T Consensus       114 ~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~---------~~~~l~~~~~~~i~~qi~~~l~~lH~---~~iiHrDlkp  180 (364)
T 3op5_A          114 WGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEA---------NAKRFSRKTVLQLSLRILDILEYIHE---HEYVHGDIKA  180 (364)
T ss_dssp             EEEEEEEETTEEEEEEEEECE-EEEHHHHHHH---------TTSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCG
T ss_pred             EeeeeeccCCcceEEEEEeCC-CCCHHHHHHh---------ccCCCCHHHHHHHHHHHHHHHHHHHH---CCeEEecCCH
Confidence            999854      379999999 9999999942         33579999999999999999999999   6799999999


Q ss_pred             Cccccc--CCCcEEEecCCCccc--------------------------------cCCCcccccccHHHHHHHHhhCCCC
Q 005680          470 SSILLD--RNLVAKISGLGLNIC--------------------------------DQLNVRSDIRAFGTLLLHLLTGRNW  515 (683)
Q Consensus       470 ~NILld--~~~~~KL~DFGla~~--------------------------------~~~t~ksDVwSlGviL~eLltG~~P  515 (683)
                      +||||+  .++.+||+|||+++.                                ..++.++|||||||++|+|+||+.|
T Consensus       181 ~Nill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~P  260 (364)
T 3op5_A          181 SNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLP  260 (364)
T ss_dssp             GGEEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCT
T ss_pred             HHEEEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCC
Confidence            999999  889999999999832                                2367899999999999999999999


Q ss_pred             chhhHHHhh-------hhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhcc
Q 005680          516 AGLVEKAMA-------LDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKAD  584 (683)
Q Consensus       516 f~~~~~~~~-------~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~~  584 (683)
                      |........       .....+..+++...  .+..++..+.+|+..||+.|  |..||++.+|++.|+.+.....
T Consensus       261 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~cl~~~--p~~RP~~~~l~~~l~~~~~~~~  332 (364)
T 3op5_A          261 WEDNLKDPKYVRDSKIRYRENIASLMDKCF--PAANAPGEIAKYMETVKLLD--YTEKPLYENLRDILLQGLKAIG  332 (364)
T ss_dssp             TGGGTTCHHHHHHHHHHHHHCHHHHHHHHS--CTTCCCHHHHHHHHHHHTCC--TTCCCCHHHHHHHHHHHHHHTT
T ss_pred             ccccccCHHHHHHHHHHhhhhHHHHHHHhc--ccccCHHHHHHHHHHHhcCC--CCCCCCHHHHHHHHHHHHHHcC
Confidence            974211000       00111222222211  11345788999999999999  8899999999999999887543

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=5e-36  Score=320.62  Aligned_cols=225  Identities=15%  Similarity=0.223  Sum_probs=182.0

Q ss_pred             cccCHHHHHHhhcCccc---cccccccCCceEEEEEEE--CCeeEEEEEcCCCC----------CHHHHHHHHHHHHhcC
Q 005680          324 REYAAEDIRLATEDFSE---RFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----------SEEDFQAKVSFLTAVR  388 (683)
Q Consensus       324 ~~~s~~ei~~at~~F~~---~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----------~~~~~~~Ev~iL~~l~  388 (683)
                      ..+++.++......|..   ..+.+|+|+||.||+|..  +|..||||++....          ....+.+|+.++++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~   87 (335)
T 3dls_A            8 KAVELEGLAACEGEYSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVE   87 (335)
T ss_dssp             -CEECCHHHHHTTHHHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCC
T ss_pred             ccccccccccCCcccccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCC
Confidence            34444555454444433   235678999999999987  68999999987332          2346788999999999


Q ss_pred             CCCccceeccccc--ceeEEEeecCCC-CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEec
Q 005680          389 HPHLVAVMGCCSE--LKCIVFEYMPNG-NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHG  465 (683)
Q Consensus       389 HpnIV~l~g~~~~--~~~LV~Ey~~gg-sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHr  465 (683)
                      |||||+++++|.+  ..++||||+.+| +|.+++          .....+++..+..|+.||+.||.|||+   .+|+||
T Consensus        88 h~~Iv~~~~~~~~~~~~~lv~e~~~~g~~l~~~~----------~~~~~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~  154 (335)
T 3dls_A           88 HANIIKVLDIFENQGFFQLVMEKHGSGLDLFAFI----------DRHPRLDEPLASYIFRQLVSAVGYLRL---KDIIHR  154 (335)
T ss_dssp             CTTBCCEEEEEECSSEEEEEEECCTTSCBHHHHH----------HTCCCCCHHHHHHHHHHHHHHHHHHHH---TTEECS
T ss_pred             CCCEeeEEEEEeeCCEEEEEEEeCCCCccHHHHH----------HhcCCCCHHHHHHHHHHHHHHHHHHHh---CCeEEe
Confidence            9999999999976  688999999777 999999          345679999999999999999999999   679999


Q ss_pred             cCCCCcccccCCCcEEEecCCCccc------------------------cC-CCcccccccHHHHHHHHhhCCCCchhhH
Q 005680          466 SLTPSSILLDRNLVAKISGLGLNIC------------------------DQ-LNVRSDIRAFGTLLLHLLTGRNWAGLVE  520 (683)
Q Consensus       466 DLKP~NILld~~~~~KL~DFGla~~------------------------~~-~t~ksDVwSlGviL~eLltG~~Pf~~~~  520 (683)
                      ||||+|||++.++.+||+|||++..                        .. ++.++|||||||++|+|++|.+||....
T Consensus       155 Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~  234 (335)
T 3dls_A          155 DIKDENIVIAEDFTIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELE  234 (335)
T ss_dssp             CCSGGGEEECTTSCEEECCCTTCEECCTTCCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGG
T ss_pred             ccCHHHEEEcCCCcEEEeecccceECCCCCceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHH
Confidence            9999999999999999999999853                        12 3778999999999999999999996522


Q ss_pred             HHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          521 KAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       521 ~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .           .. ......|..+++.+.+|+.+||+.|  |..|||+.++++.
T Consensus       235 ~-----------~~-~~~~~~~~~~~~~l~~li~~~L~~d--P~~Rps~~ell~h  275 (335)
T 3dls_A          235 E-----------TV-EAAIHPPYLVSKELMSLVSGLLQPV--PERRTTLEKLVTD  275 (335)
T ss_dssp             G-----------GT-TTCCCCSSCCCHHHHHHHHHHTCSS--GGGSCCHHHHHHC
T ss_pred             H-----------HH-hhccCCCcccCHHHHHHHHHHccCC--hhhCcCHHHHhcC
Confidence            1           11 1122334457889999999999999  8899999998764

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=1.3e-35  Score=307.07  Aligned_cols=219  Identities=20%  Similarity=0.273  Sum_probs=177.2

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVF  407 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~  407 (683)
                      ++|.. .+.+|.|+||.||+|..  +|..||+|++....    ....+.+|+.++.+++||||+++++++.+  ..++||
T Consensus         6 ~~y~~-~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   84 (284)
T 3kk8_A            6 DNYDV-KEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF   84 (284)
T ss_dssp             TTEEE-EEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhhhh-hhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence            44443 35678999999999998  58999999987322    23568899999999999999999999966  679999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc---EEEec
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV---AKISG  484 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~---~KL~D  484 (683)
                      ||+++|+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.   +||+|
T Consensus        85 e~~~~~~l~~~~~----------~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~~~~kl~D  151 (284)
T 3kk8_A           85 DLVTGGELFEDIV----------AREFYSEADASHCIQQILESIAYCHS---NGIVHRNLKPENLLLASKAKGAAVKLAD  151 (284)
T ss_dssp             CCCCSCBHHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEESSSSTTCCEEECC
T ss_pred             ecCCCCCHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCcCcCCCCHHHEEEecCCCCCcEEEee
Confidence            9999999999983          44679999999999999999999999   67999999999999986655   99999


Q ss_pred             CCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCC---
Q 005680          485 LGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGN---  537 (683)
Q Consensus       485 FGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~---  537 (683)
                      ||++..                        ..++.++||||||+++|+|++|++||.....     ......+....   
T Consensus       152 fg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~-----~~~~~~~~~~~~~~  226 (284)
T 3kk8_A          152 FGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ-----HRLYAQIKAGAYDY  226 (284)
T ss_dssp             CTTCEECCSSCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHTCCCC
T ss_pred             ceeeEEcccCccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCch-----hHHHHHHHhccccC
Confidence            999842                        2467899999999999999999999964322     11122222221   


Q ss_pred             CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          538 AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       538 ~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .......+++.+.+|+.+||+.|  |..|||+.++++.
T Consensus       227 ~~~~~~~~~~~~~~li~~~l~~d--p~~Rps~~~~l~h  262 (284)
T 3kk8_A          227 PSPEWDTVTPEAKSLIDSMLTVN--PKKRITADQALKV  262 (284)
T ss_dssp             CTTTTTTSCHHHHHHHHHHSCSS--TTTSCCHHHHTTS
T ss_pred             CchhhcccCHHHHHHHHHHcccC--hhhCCCHHHHhcC
Confidence            11222367889999999999999  8899999999874

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=1.2e-35  Score=315.75  Aligned_cols=226  Identities=15%  Similarity=0.168  Sum_probs=182.3

Q ss_pred             HHHhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCC----CCCHHHHHHHHHHHHhc-CCCCccceeccccc--
Q 005680          331 IRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN----GLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--  401 (683)
Q Consensus       331 i~~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~----~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--  401 (683)
                      .....+.|....+.+|.|+||.||+|..  +|+.||||++..    ......+.+|+.++..+ .||||+++++++.+  
T Consensus        23 ~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~  102 (327)
T 3lm5_A           23 MENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTS  102 (327)
T ss_dssp             HHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS
T ss_pred             HHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCC
Confidence            3334444444447789999999999998  589999999873    22357899999999999 46999999999966  


Q ss_pred             ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC---CC
Q 005680          402 LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR---NL  478 (683)
Q Consensus       402 ~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~---~~  478 (683)
                      ..++||||+++|+|.+++...        ....+++..++.|+.||+.||.|||+   .+|+||||||+|||++.   ++
T Consensus       103 ~~~lv~e~~~~~~L~~~~~~~--------~~~~~~~~~~~~i~~ql~~~L~~LH~---~givH~Dikp~NIl~~~~~~~~  171 (327)
T 3lm5_A          103 EIILILEYAAGGEIFSLCLPE--------LAEMVSENDVIRLIKQILEGVYYLHQ---NNIVHLDLKPQNILLSSIYPLG  171 (327)
T ss_dssp             EEEEEEECCTTEEGGGGGSSC--------C-CCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEESCBTTBC
T ss_pred             eEEEEEEecCCCcHHHHHHHh--------cccCCCHHHHHHHHHHHHHHHHHHHH---CCeecCcCChHHEEEecCCCCC
Confidence            789999999999999998422        34679999999999999999999999   67999999999999987   78


Q ss_pred             cEEEecCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHh
Q 005680          479 VAKISGLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVL  534 (683)
Q Consensus       479 ~~KL~DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~il  534 (683)
                      .+||+|||++..                        ..++.++|||||||++|+|++|++||......     .....+.
T Consensus       172 ~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~-----~~~~~i~  246 (327)
T 3lm5_A          172 DIKIVDFGMSRKIGHACELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQ-----ETYLNIS  246 (327)
T ss_dssp             CEEECCGGGCEEC---------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-----HHHHHHH
T ss_pred             cEEEeeCccccccCCccccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCch-----HHHHHHH
Confidence            999999999853                        34678999999999999999999999653221     1111222


Q ss_pred             c---CCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          535 D---GNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       535 d---~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .   ......+..++..+.+|+.+||+.|  |..|||+.++++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~Rpt~~~ll~  287 (327)
T 3lm5_A          247 QVNVDYSEETFSSVSQLATDFIQSLLVKN--PEKRPTAEICLS  287 (327)
T ss_dssp             HTCCCCCTTTTTTSCHHHHHHHHHHSCSS--GGGSCCHHHHTT
T ss_pred             hcccccCchhhcccCHHHHHHHHHHcCCC--hhhCcCHHHHhC
Confidence            1   2223334567889999999999999  889999998864

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=8.5e-36  Score=314.16  Aligned_cols=224  Identities=15%  Similarity=0.186  Sum_probs=181.7

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC--C---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL--S---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~--~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV  406 (683)
                      ++|.. .+.+|.|+||.||+|..  +++.||||++....  .   ...+.+|+.++.+++||||+++++++.+  ..++|
T Consensus        34 ~~y~~-~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv  112 (309)
T 2h34_A           34 GPYRL-RRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD  112 (309)
T ss_dssp             CCEEE-EEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             ccEEE-EEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence            44544 45678999999999998  68999999997321  1   2678899999999999999999999865  78999


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      |||+++++|.+++.          ....+++..++.++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||
T Consensus       113 ~e~~~~~~L~~~l~----------~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dlkp~NIl~~~~~~~kl~Dfg  179 (309)
T 2h34_A          113 MRLINGVDLAAMLR----------RQGPLAPPRAVAIVRQIGSALDAAHA---AGATHRDVKPENILVSADDFAYLVDFG  179 (309)
T ss_dssp             EECCCCEEHHHHHH----------HHCSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECSCC
T ss_pred             EEecCCCCHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CcCCcCCCChHHEEEcCCCCEEEecCc
Confidence            99999999999994          34569999999999999999999999   679999999999999999999999999


Q ss_pred             Cccc--------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC---C
Q 005680          487 LNIC--------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG---N  537 (683)
Q Consensus       487 la~~--------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~---~  537 (683)
                      ++..                          ..++.++||||||+++|+|++|++||......      .+...+..   .
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~------~~~~~~~~~~~~  253 (309)
T 2h34_A          180 IASATTDEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLS------VMGAHINQAIPR  253 (309)
T ss_dssp             C----------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHH------HHHHHHHSCCCC
T ss_pred             cCccccccccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHH------HHHHHhccCCCC
Confidence            8742                          23577999999999999999999999753321      12222222   1


Q ss_pred             CCCCChhhHHHHHHHHHHhhhcCCCccccc-cHHHHHHHHHHHHH
Q 005680          538 AGIWPLDLAEELAGIALKCLSADQDANRDL-RIAGVMKELDEVRK  581 (683)
Q Consensus       538 ~~~~p~~~~~~l~~Li~~CL~~dP~p~~RP-s~~eVl~~L~~l~~  581 (683)
                      ....+..++..+.+|+.+||+.|  |..|| |+.+++..|+.+..
T Consensus       254 ~~~~~~~~~~~l~~li~~~l~~d--P~~Rp~s~~~l~~~l~~~l~  296 (309)
T 2h34_A          254 PSTVRPGIPVAFDAVIARGMAKN--PEDRYVTCGDLSAAAHAALA  296 (309)
T ss_dssp             GGGTSTTCCTHHHHHHHHHTCSS--GGGSCSSHHHHHHHHHHTCC
T ss_pred             ccccCCCCCHHHHHHHHHhccCC--HHHHHHhHHHHHHHHHHHHH
Confidence            12334567889999999999999  88999 89999999987643

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.1e-35  Score=313.99  Aligned_cols=227  Identities=19%  Similarity=0.243  Sum_probs=179.7

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC--CHHHHHHHHHHHHhcC-CCCccceecccc--------c-
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL--SEEDFQAKVSFLTAVR-HPHLVAVMGCCS--------E-  401 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~--~~~~~~~Ev~iL~~l~-HpnIV~l~g~~~--------~-  401 (683)
                      .+|.. .+++|.|+||.||+|.+  +|..||||++....  ....+.+|+.++.++. |||||++++++.        + 
T Consensus        28 ~~y~~-~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~  106 (337)
T 3ll6_A           28 LRLRV-RRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQ  106 (337)
T ss_dssp             EEEEE-EEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSS
T ss_pred             ceEEE-EEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCC
Confidence            34533 46778999999999998  78999999986332  2457889999999996 999999999882        2 


Q ss_pred             -ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcE
Q 005680          402 -LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVA  480 (683)
Q Consensus       402 -~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~  480 (683)
                       ..++||||+. |+|.+++...       .....+++..++.|+.||+.||.|||+.+ .+|+||||||+|||++.++.+
T Consensus       107 ~~~~lv~e~~~-g~L~~~l~~~-------~~~~~~~~~~~~~i~~qi~~~l~~LH~~~-~~ivH~Dikp~NIl~~~~~~~  177 (337)
T 3ll6_A          107 AEFLLLTELCK-GQLVEFLKKM-------ESRGPLSCDTVLKIFYQTCRAVQHMHRQK-PPIIHRDLKVENLLLSNQGTI  177 (337)
T ss_dssp             EEEEEEEECCS-EEHHHHHHHH-------HTTCSCCHHHHHHHHHHHHHHHHHHHTSS-SCCBCCCCCGGGCEECTTSCE
T ss_pred             ceEEEEEEecC-CCHHHHHHHh-------hccCCCCHHHHHHHHHHHHHHHHHHHhCC-CCEEEccCCcccEEECCCCCE
Confidence             4789999996 7999998543       24457999999999999999999999943 239999999999999999999


Q ss_pred             EEecCCCccc----------------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhH
Q 005680          481 KISGLGLNIC----------------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVE  520 (683)
Q Consensus       481 KL~DFGla~~----------------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~  520 (683)
                      ||+|||++..                                        ..++.++|||||||++|+|+||+.||....
T Consensus       178 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~  257 (337)
T 3ll6_A          178 KLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGA  257 (337)
T ss_dssp             EBCCCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC----
T ss_pred             EEecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchh
Confidence            9999999742                                        125678999999999999999999996422


Q ss_pred             HHhhhhHHHHHHHhcC-CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          521 KAMALDQTTLMQVLDG-NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       521 ~~~~~~~~~~~~ild~-~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      ..         .++.. .....+...+..+.+|+.+||+.|  |..|||+.++++.|+.+....
T Consensus       258 ~~---------~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--p~~Rps~~e~l~~l~~~~~~~  310 (337)
T 3ll6_A          258 KL---------RIVNGKYSIPPHDTQYTVFHSLIRAMLQVN--PEERLSIAEVVHQLQEIAAAR  310 (337)
T ss_dssp             -----------------CCCCTTCCSSGGGHHHHHHHSCSS--GGGSCCHHHHHHHHHHHHHHT
T ss_pred             HH---------HhhcCcccCCcccccchHHHHHHHHHccCC--hhhCcCHHHHHHHHHHHHhcc
Confidence            21         11111 122223345667999999999999  889999999999999997654

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=1.1e-35  Score=339.86  Aligned_cols=223  Identities=21%  Similarity=0.325  Sum_probs=184.6

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcC-----CCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN-----NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~-----~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV  406 (683)
                      ++|.. .+++|+|+||.||+|..  +|..||||++.     .......+.+|+.+|..++|||||++++++.+  ..|||
T Consensus       184 ~~f~~-~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV  262 (576)
T 2acx_A          184 NTFRQ-YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV  262 (576)
T ss_dssp             GGEEE-EEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cceEE-EEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence            44543 46788999999999998  68999999986     23345678999999999999999999999966  78999


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      |||++||+|.+++...        ....+++..+..|+.||+.||.|||+   .+||||||||+||||+.+|.+||+|||
T Consensus       263 mEy~~gg~L~~~l~~~--------~~~~l~e~~~~~i~~qIl~aL~yLH~---~gIvHrDLKPeNILld~~g~vKL~DFG  331 (576)
T 2acx_A          263 LTLMNGGDLKFHIYHM--------GQAGFPEARAVFYAAEICCGLEDLHR---ERIVYRDLKPENILLDDHGHIRISDLG  331 (576)
T ss_dssp             ECCCCSCBHHHHHHSS--------SSCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCT
T ss_pred             EEcCCCCcHHHHHHhc--------CCCCCCHHHHHHHHHHHHHHHHHHHH---CCEeccCCchheEEEeCCCCeEEEecc
Confidence            9999999999999532        23459999999999999999999999   679999999999999999999999999


Q ss_pred             Cccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCC
Q 005680          487 LNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWP  542 (683)
Q Consensus       487 la~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p  542 (683)
                      +++.                        ..++.++|||||||++|+|++|++||......  .....+...+......+|
T Consensus       332 la~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~--~~~~~i~~~i~~~~~~~p  409 (576)
T 2acx_A          332 LAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKK--IKREEVERLVKEVPEEYS  409 (576)
T ss_dssp             TCEECCTTCCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSC--CCHHHHHHHHHHCCCCCC
T ss_pred             cceecccCccccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccc--hhHHHHHHHhhcccccCC
Confidence            9853                        24788999999999999999999999753211  112223333333445667


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccc-----cHHHHHH
Q 005680          543 LDLAEELAGIALKCLSADQDANRDL-----RIAGVMK  574 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RP-----s~~eVl~  574 (683)
                      ..+++.+.+||.+||..|  |..||     ++.+|++
T Consensus       410 ~~~s~~~~dLI~~lL~~d--P~~R~g~~~~sa~eil~  444 (576)
T 2acx_A          410 ERFSPQARSLCSQLLCKD--PAERLGCRGGSAREVKE  444 (576)
T ss_dssp             TTSCHHHHHHHHHHTCSS--GGGSTTCSSSHHHHHHT
T ss_pred             ccCCHHHHHHHHHhccCC--HHHcCCCCCCCHHHHHh
Confidence            788999999999999999  88999     7777765

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=1.6e-35  Score=305.21  Aligned_cols=217  Identities=23%  Similarity=0.310  Sum_probs=180.1

Q ss_pred             CccccccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEE
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVF  407 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~  407 (683)
                      +|.. .+.+|.|+||.||+|..  +|+.||||++..     ......+.+|+.+++.++||||+++++++.+  ..++||
T Consensus        12 ~y~i-~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   90 (276)
T 2h6d_A           12 HYVL-GDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVM   90 (276)
T ss_dssp             TEEE-EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cEEE-EeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEE
Confidence            4433 45678999999999998  589999999862     2345678999999999999999999999865  789999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCC
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL  487 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGl  487 (683)
                      ||+++++|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+
T Consensus        91 e~~~~~~L~~~l~----------~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~l~dfg~  157 (276)
T 2h6d_A           91 EYVSGGELFDYIC----------KHGRVEEMEARRLFQQILSAVDYCHR---HMVVHRDLKPENVLLDAHMNAKIADFGL  157 (276)
T ss_dssp             ECCCSCBHHHHHH----------HHCSCCHHHHHHHHHHHHHHHHHHHH---HCSSCCCCCGGGEEECTTSCEEECCCCG
T ss_pred             eccCCCcHHHHHh----------ccCCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCChhhEEECCCCCEEEeeccc
Confidence            9999999999994          34568999999999999999999999   6799999999999999999999999998


Q ss_pred             ccc------------------------c-CCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCC
Q 005680          488 NIC------------------------D-QLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWP  542 (683)
Q Consensus       488 a~~------------------------~-~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p  542 (683)
                      +..                        . ..+.++||||||+++|+|++|..||.....      ......+.......|
T Consensus       158 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~------~~~~~~~~~~~~~~~  231 (276)
T 2h6d_A          158 SNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHV------PTLFKKIRGGVFYIP  231 (276)
T ss_dssp             GGCCCC-------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSH------HHHHHHHHHCCCCCC
T ss_pred             ccccCCCcceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcH------HHHHHHhhcCcccCc
Confidence            753                        1 125789999999999999999999964321      111122222334456


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ..++..+.+++.+||+.|  |..|||+.++++.
T Consensus       232 ~~~~~~l~~li~~~l~~~--p~~Rps~~~~l~h  262 (276)
T 2h6d_A          232 EYLNRSVATLLMHMLQVD--PLKRATIKDIREH  262 (276)
T ss_dssp             TTSCHHHHHHHHHHTCSS--GGGSCCHHHHHHS
T ss_pred             hhcCHHHHHHHHHHccCC--hhhCCCHHHHHhC
Confidence            677889999999999999  8899999999874

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.2e-35  Score=316.25  Aligned_cols=234  Identities=20%  Similarity=0.229  Sum_probs=181.5

Q ss_pred             HHHhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCC-------CCCHHHHHHHHHHHHhcCCCCccceeccccc
Q 005680          331 IRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-------GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE  401 (683)
Q Consensus       331 i~~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-------~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~  401 (683)
                      +....++|... +.+|.|+||.||+|..  ++..||||++..       ......+.+|+.++++++|||||+++++|.+
T Consensus        21 ~~~~~~~y~~~-~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~   99 (345)
T 3hko_A           21 LLELQKKYHLK-GAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYED   99 (345)
T ss_dssp             HHHHHHHEEEE-EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             hhhhhhheeec-ceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhcc
Confidence            44556666544 5678999999999998  678999999862       2334679999999999999999999999976


Q ss_pred             --ceeEEEeecCCCCchhhhhhcccccc------------------------------cccccccCCHHHHHHHHHHHHh
Q 005680          402 --LKCIVFEYMPNGNLRDKLFTSQRNYK------------------------------NCSRARALRWLDRIHIAHEVCL  449 (683)
Q Consensus       402 --~~~LV~Ey~~ggsL~~~L~~~~~~~~------------------------------~~~~~~~L~~~~~~~I~~qIa~  449 (683)
                        ..+|||||++||+|.+++........                              .......+++..+..|+.||+.
T Consensus       100 ~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~  179 (345)
T 3hko_A          100 EQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFS  179 (345)
T ss_dssp             SSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHH
Confidence              68999999999999999852210000                              0011234577888999999999


Q ss_pred             hhhhhccCCCCcEEeccCCCCcccccCCC--cEEEecCCCccc-------------------------------cCCCcc
Q 005680          450 GLSFLHSTEPRPIVHGSLTPSSILLDRNL--VAKISGLGLNIC-------------------------------DQLNVR  496 (683)
Q Consensus       450 aL~yLH~~~~~~IiHrDLKP~NILld~~~--~~KL~DFGla~~-------------------------------~~~t~k  496 (683)
                      ||.|||+   .+|+||||||+|||++.++  .+||+|||++..                               ..++.+
T Consensus       180 ~l~~LH~---~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~  256 (345)
T 3hko_A          180 ALHYLHN---QGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPK  256 (345)
T ss_dssp             HHHHHHH---TTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTH
T ss_pred             HHHHHHH---CCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcH
Confidence            9999999   6799999999999998776  899999998742                               246789


Q ss_pred             cccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCC-CC--ChhhHHHHHHHHHHhhhcCCCccccccHHHHH
Q 005680          497 SDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG-IW--PLDLAEELAGIALKCLSADQDANRDLRIAGVM  573 (683)
Q Consensus       497 sDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~-~~--p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl  573 (683)
                      +|||||||++|+|++|++||.....     ......++..... ..  ...+++.+.+|+.+||+.|  |.+|||+.+++
T Consensus       257 ~DiwslG~il~el~~g~~pf~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--p~~Rps~~~~l  329 (345)
T 3hko_A          257 CDAWSAGVLLHLLLMGAVPFPGVND-----ADTISQVLNKKLCFENPNYNVLSPLARDLLSNLLNRN--VDERFDAMRAL  329 (345)
T ss_dssp             HHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHCCCCTTSGGGGGSCHHHHHHHHHHSCSC--TTTSCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCh-----HHHHHHHHhcccccCCcccccCCHHHHHHHHHHcCCC--hhHCCCHHHHh
Confidence            9999999999999999999965322     1222333333221 11  1246889999999999999  88999999997


Q ss_pred             HH
Q 005680          574 KE  575 (683)
Q Consensus       574 ~~  575 (683)
                      +.
T Consensus       330 ~h  331 (345)
T 3hko_A          330 QH  331 (345)
T ss_dssp             HS
T ss_pred             cC
Confidence            63

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=9.3e-36  Score=320.52  Aligned_cols=215  Identities=22%  Similarity=0.323  Sum_probs=176.8

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCCC-C----HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-S----EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-~----~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      .+.+|+|+||.||+|..  +|..||||++.... .    ...+.+|+.++++++|||||+++++|.+  ..+|||||+. 
T Consensus        59 ~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~-  137 (348)
T 1u5q_A           59 LREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCL-  137 (348)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCS-
T ss_pred             eeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEEecCC-
Confidence            45678999999999997  68999999987322 1    2468899999999999999999999865  7899999997 


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++..         ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..  
T Consensus       138 g~l~~~l~~---------~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~  205 (348)
T 1u5q_A          138 GSASDLLEV---------HKKPLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGSASIMA  205 (348)
T ss_dssp             EEHHHHHHH---------HTSCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEEETTTEEEECCCTTCBSSS
T ss_pred             CCHHHHHHH---------hcCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEECCCCCEEEeeccCceecC
Confidence            688888842         34579999999999999999999999   6799999999999999999999999999853  


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC-CCCCCChhhHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG-NAGIWPLDLAE  547 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~-~~~~~p~~~~~  547 (683)
                                            ..++.++|||||||++|+|+||++||.....     ...+..+... .....+..++.
T Consensus       206 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  280 (348)
T 1u5q_A          206 PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA-----MSALYHIAQNESPALQSGHWSE  280 (348)
T ss_dssp             SBCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH-----HHHHHHHHHSCCCCCCCTTSCH
T ss_pred             CCCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh-----HHHHHHHHhcCCCCCCCCCCCH
Confidence                                  2467899999999999999999999864322     1112223322 22223446788


Q ss_pred             HHHHHHHHhhhcCCCccccccHHHHHHHH
Q 005680          548 ELAGIALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       548 ~l~~Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                      .+.+|+.+||+.|  |..|||+.++++..
T Consensus       281 ~l~~li~~~l~~d--P~~Rps~~~ll~h~  307 (348)
T 1u5q_A          281 YFRNFVDSCLQKI--PQDRPTSEVLLKHR  307 (348)
T ss_dssp             HHHHHHHHHTCSS--GGGSCCHHHHTTCH
T ss_pred             HHHHHHHHHcccC--hhhCcCHHHHhhCh
Confidence            9999999999999  88999999998653

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.6e-35  Score=310.78  Aligned_cols=216  Identities=20%  Similarity=0.258  Sum_probs=174.1

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCCCC----HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLS----EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~----~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      .+.+|.|+||.||+|.+  +|..||||++.....    ...+.+|+.++.+++||||+++++++.+  ..++||||++++
T Consensus         8 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   87 (311)
T 4agu_A            8 IGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFEYCDHT   87 (311)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSEE
T ss_pred             eeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEEeCCCc
Confidence            45678999999999998  589999999873332    3567899999999999999999999966  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++          .....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..   
T Consensus        88 ~l~~~~----------~~~~~~~~~~~~~i~~~l~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  154 (311)
T 4agu_A           88 VLHELD----------RYQRGVPEHLVKSITWQTLQAVNFCHK---HNCIHRDVKPENILITKHSVIKLCDFGFARLLTG  154 (311)
T ss_dssp             HHHHHH----------HTSSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECC-
T ss_pred             hHHHHH----------hhhcCCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCCChhhEEEcCCCCEEEeeCCCchhccC
Confidence            999988          345679999999999999999999999   6799999999999999999999999999742   


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHh-------------
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVL-------------  534 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~il-------------  534 (683)
                                             ..++.++|||||||++|+|+||++||.........  ..+...+             
T Consensus       155 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  232 (311)
T 4agu_A          155 PSDYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQL--YLIRKTLGDLIPRHQQVFST  232 (311)
T ss_dssp             -----------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH--HHHHHHHCSCCHHHHHHHHT
T ss_pred             cccccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHH--HHHHHHhccccccccccccc
Confidence                                   24688999999999999999999999643221000  0000000             


Q ss_pred             ----cCCCCCC----------ChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          535 ----DGNAGIW----------PLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       535 ----d~~~~~~----------p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                          .......          .+.++..+.+|+.+||+.|  |..|||+.++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~Rpt~~ell~  284 (311)
T 4agu_A          233 NQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMD--PTERLTCEQLLH  284 (311)
T ss_dssp             CGGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSS--TTTSCCHHHHHT
T ss_pred             ccccccCcCCCccccchhhhhcccccHHHHHHHHHHccCC--hhhcCCHHHHhc
Confidence                0000000          0246778999999999999  889999999875

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=1e-35  Score=314.31  Aligned_cols=234  Identities=19%  Similarity=0.317  Sum_probs=185.9

Q ss_pred             ccccCHHHHHHhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcC-CCCCHHHHHHHHHHHHhc-CCCCccceecc
Q 005680          323 FREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN-NGLSEEDFQAKVSFLTAV-RHPHLVAVMGC  398 (683)
Q Consensus       323 ~~~~s~~ei~~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~-~~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~  398 (683)
                      ...+++.++....+.|... +.+|.|+||.||+|.+  +|..||||++. .......+.+|+.++.++ +||||++++++
T Consensus        11 ~~~~~~~~l~~~~~~y~~~-~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~   89 (326)
T 2x7f_A           11 LDEIDLSALRDPAGIFELV-ELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGA   89 (326)
T ss_dssp             -----CCCCCCCTTTEEEE-EEEEEETTEEEEEEEETTTCCEEEEEEEECCSSTTHHHHHHHHHHHHHCCSTTBCCEEEE
T ss_pred             chhccchhccCCCCcEEEE-EEeccCCCEEEEEEEECCCCCeEEEEEEecCcccHHHHHHHHHHHHhccCCCCeeeeeeE
Confidence            3455566666667777554 5678999999999998  78999999987 334457899999999999 89999999999


Q ss_pred             ccc--------ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCC
Q 005680          399 CSE--------LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPS  470 (683)
Q Consensus       399 ~~~--------~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~  470 (683)
                      +..        ..++||||+++|+|.+++...        ....+++..+..++.||+.||.|||+   .+|+||||||+
T Consensus        90 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--------~~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~  158 (326)
T 2x7f_A           90 FIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNT--------KGNTLKEEWIAYICREILRGLSHLHQ---HKVIHRDIKGQ  158 (326)
T ss_dssp             EEECC--CCCCEEEEEEECCTTEEHHHHHHHS--------GGGCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGG
T ss_pred             EeeccCccccceEEEEEEcCCCCcHHHHHHhc--------ccCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCcHH
Confidence            842        679999999999999999533        23578999999999999999999999   67999999999


Q ss_pred             cccccCCCcEEEecCCCccc------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhH
Q 005680          471 SILLDRNLVAKISGLGLNIC------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVE  520 (683)
Q Consensus       471 NILld~~~~~KL~DFGla~~------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~  520 (683)
                      |||++.++.+||+|||++..                              ..++.++|||||||++|+|+||.+||....
T Consensus       159 NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  238 (326)
T 2x7f_A          159 NVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMH  238 (326)
T ss_dssp             GEEECTTCCEEECCCTTTC-------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred             HEEEcCCCCEEEeeCcCceecCcCccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCc
Confidence            99999999999999998742                              136778999999999999999999996432


Q ss_pred             HHhhhhHHHHHHHhcC-CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          521 KAMALDQTTLMQVLDG-NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       521 ~~~~~~~~~~~~ild~-~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ..     .....+... .....+..++..+.+|+.+||..|  |..|||+.++++.
T Consensus       239 ~~-----~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d--p~~Rps~~~ll~h  287 (326)
T 2x7f_A          239 PM-----RALFLIPRNPAPRLKSKKWSKKFQSFIESCLVKN--HSQRPATEQLMKH  287 (326)
T ss_dssp             HH-----HHHHHHHHSCCCCCSCSCSCHHHHHHHHHHCCSS--GGGSCCHHHHHTS
T ss_pred             HH-----HHHHHhhcCccccCCccccCHHHHHHHHHHhccC--hhhCCCHHHHhhC
Confidence            21     111122222 222234467889999999999999  8899999998863

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=2e-35  Score=306.42  Aligned_cols=225  Identities=22%  Similarity=0.304  Sum_probs=178.0

Q ss_pred             CccccccccccCCceEEEEEEE---CC--eeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc-ceeE
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL---NH--ASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCI  405 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~---~g--~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~L  405 (683)
                      +|.. .+.+|.|+||.||+|.+   ++  ..||||+++..     ...+.+.+|+.++.+++||||+++++++.+ ..++
T Consensus        19 ~y~~-~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   97 (291)
T 1u46_A           19 DLRL-LEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKM   97 (291)
T ss_dssp             GEEE-EEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEE
T ss_pred             Heee-eeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCCcee
Confidence            4433 35678999999999986   22  36999998732     224678899999999999999999999976 7899


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecC
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGL  485 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DF  485 (683)
                      ||||+++|+|.+++..         ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+||
T Consensus        98 v~e~~~~~~L~~~l~~---------~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nili~~~~~~kl~Df  165 (291)
T 1u46_A           98 VTELAPLGSLLDRLRK---------HQGHFLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIGDF  165 (291)
T ss_dssp             EEECCTTCBHHHHHHH---------HGGGSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEETTEEEECCC
T ss_pred             eEecccCCCHHHHHHh---------ccCCcCHHHHHHHHHHHHHHHHHHHh---CCcccCCCchheEEEcCCCCEEEccc
Confidence            9999999999999953         23568999999999999999999999   67999999999999999999999999


Q ss_pred             CCccc----------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhc-
Q 005680          486 GLNIC----------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLD-  535 (683)
Q Consensus       486 Gla~~----------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild-  535 (683)
                      |++..                            ..++.++||||||+++|+|++ |++||.....     ...+..+.. 
T Consensus       166 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~-----~~~~~~~~~~  240 (291)
T 1u46_A          166 GLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNG-----SQILHKIDKE  240 (291)
T ss_dssp             TTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCH-----HHHHHHHHTS
T ss_pred             cccccccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCH-----HHHHHHHHcc
Confidence            98743                            135678999999999999999 9999965322     122222222 


Q ss_pred             CCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHH
Q 005680          536 GNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRK  581 (683)
Q Consensus       536 ~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~  581 (683)
                      ......+..++..+.+++.+||..|  |..|||+.++++.|+.+..
T Consensus       241 ~~~~~~~~~~~~~l~~li~~~l~~~--p~~Rps~~~l~~~l~~~~~  284 (291)
T 1u46_A          241 GERLPRPEDCPQDIYNVMVQCWAHK--PEDRPTFVALRDFLLEAQP  284 (291)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHC-
T ss_pred             CCCCCCCcCcCHHHHHHHHHHccCC--cccCcCHHHHHHHHHHhCc
Confidence            2334455678899999999999999  8899999999999988753

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=4.8e-35  Score=302.66  Aligned_cols=219  Identities=21%  Similarity=0.297  Sum_probs=179.6

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC--------CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEee
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG--------LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEY  409 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~--------~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey  409 (683)
                      .+.+|.|+||.||+|..  +|..||||++...        ...+.+.+|+.++.+++||||+++++++.+  ..++||||
T Consensus        10 ~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   89 (283)
T 3bhy_A           10 GEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVVLILEL   89 (283)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             HHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEEEEEee
Confidence            35678999999999998  5899999998622        135789999999999999999999999966  78999999


Q ss_pred             cCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCC----cEEEecC
Q 005680          410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL----VAKISGL  485 (683)
Q Consensus       410 ~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~----~~KL~DF  485 (683)
                      +++++|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++    .+||+||
T Consensus        90 ~~~~~L~~~l~----------~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~~~~kl~df  156 (283)
T 3bhy_A           90 VSGGELFDFLA----------EKESLTEDEATQFLKQILDGVHYLHS---KRIAHFDLKPENIMLLDKNVPNPRIKLIDF  156 (283)
T ss_dssp             CCSCBHHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCSSSSSCCEEECCC
T ss_pred             cCCCcHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCChHHEEEecCCCCCCceEEEec
Confidence            99999999994          34579999999999999999999999   6799999999999998877    8999999


Q ss_pred             CCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCC
Q 005680          486 GLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIW  541 (683)
Q Consensus       486 Gla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~  541 (683)
                      |++..                        ..++.++||||||+++|+|++|.+||.....     ...+..+... ...+
T Consensus       157 g~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----~~~~~~~~~~-~~~~  230 (283)
T 3bhy_A          157 GIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETK-----QETLTNISAV-NYDF  230 (283)
T ss_dssp             TTCEECC--------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHHHHTT-CCCC
T ss_pred             ccceeccCCCcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcch-----HHHHHHhHhc-ccCC
Confidence            98853                        3467899999999999999999999965322     1112222221 1122


Q ss_pred             C----hhhHHHHHHHHHHhhhcCCCccccccHHHHHH--HHHHHHH
Q 005680          542 P----LDLAEELAGIALKCLSADQDANRDLRIAGVMK--ELDEVRK  581 (683)
Q Consensus       542 p----~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~--~L~~l~~  581 (683)
                      +    ..++..+.+|+.+||..|  |..|||+.+++.  .++.++.
T Consensus       231 ~~~~~~~~~~~~~~li~~~l~~d--p~~Rps~~~~l~h~~~~~~~~  274 (283)
T 3bhy_A          231 DEEYFSNTSELAKDFIRRLLVKD--PKRRMTIAQSLEHSWIKAIRR  274 (283)
T ss_dssp             CHHHHTTCCHHHHHHHHTTSCSS--GGGSCCHHHHHHCHHHHHHHH
T ss_pred             cchhcccCCHHHHHHHHHHccCC--HhHCcCHHHHHhCHHHHHHHH
Confidence            2    345788999999999999  889999999997  3555543

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=2.1e-35  Score=309.54  Aligned_cols=214  Identities=17%  Similarity=0.283  Sum_probs=176.6

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC--CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCc
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG--LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNL  415 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~--~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL  415 (683)
                      .+.+|+|+||.||+|..  +|+.||||++...  .....+.+|+.++.+++||||+++++++.+  ..++||||+++|+|
T Consensus        14 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   93 (304)
T 2jam_A           14 MEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGEL   93 (304)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBH
T ss_pred             eeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEcCCCccH
Confidence            46678999999999998  6899999999732  234578899999999999999999999866  78999999999999


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccc---cCCCcEEEecCCCccc--
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL---DRNLVAKISGLGLNIC--  490 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILl---d~~~~~KL~DFGla~~--  490 (683)
                      .+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||+   +.++.+||+|||++..  
T Consensus        94 ~~~l~----------~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~  160 (304)
T 2jam_A           94 FDRIL----------ERGVYTEKDASLVIQQVLSAVKYLHE---NGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQ  160 (304)
T ss_dssp             HHHHH----------HHSCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCC
T ss_pred             HHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEecCCCCCCEEEccCCcceecC
Confidence            99994          34568999999999999999999999   679999999999999   7889999999998753  


Q ss_pred             ---------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC---CCCCCChhhH
Q 005680          491 ---------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG---NAGIWPLDLA  546 (683)
Q Consensus       491 ---------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~---~~~~~p~~~~  546 (683)
                                           ..++.++|||||||++|+|++|.+||.....     ......+...   .....+..++
T Consensus       161 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~  235 (304)
T 2jam_A          161 NGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETE-----SKLFEKIKEGYYEFESPFWDDIS  235 (304)
T ss_dssp             CBTTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCH-----HHHHHHHHHCCCCCCTTTTTTSC
T ss_pred             CCccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH-----HHHHHHHHcCCCCCCccccccCC
Confidence                                 2467899999999999999999999964322     1122223222   1223345678


Q ss_pred             HHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          547 EELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       547 ~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ..+.+|+.+||..|  |..|||+.++++.
T Consensus       236 ~~~~~li~~~l~~d--p~~Rps~~~~l~h  262 (304)
T 2jam_A          236 ESAKDFICHLLEKD--PNERYTCEKALSH  262 (304)
T ss_dssp             HHHHHHHHHHHCSS--TTTSCCHHHHHTS
T ss_pred             HHHHHHHHHHcCCC--hhHCcCHHHHhcC
Confidence            99999999999999  8899999998764

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=1.5e-35  Score=316.08  Aligned_cols=214  Identities=20%  Similarity=0.293  Sum_probs=179.3

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      ..+++|+|+||.||++.+  ++..||+|++...     .....+.+|+.++..++||||+++++++.+  ..|+||||++
T Consensus        45 ~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  124 (335)
T 2owb_A           45 RGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCR  124 (335)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCT
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEecCC
Confidence            346778999999999998  5789999998632     124678899999999999999999999976  6899999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      +++|.+++.          ....+++..++.|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++.. 
T Consensus       125 ~~~L~~~~~----------~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~  191 (335)
T 2owb_A          125 RRSLLELHK----------RRKALTEPEARYYLRQIVLGCQYLHR---NRVIHRDLKLGNLFLNEDLEVKIGDFGLATKV  191 (335)
T ss_dssp             TCBHHHHHH----------HHCSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             CCCHHHHHh----------ccCCCCHHHHHHHHHHHHHHHHHHHH---CCCEecCCCchhEEEcCCCCEEEeeccCceec
Confidence            999999983          44579999999999999999999999   6799999999999999999999999999853 


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhH
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLA  546 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~  546 (683)
                                              ..++.++|||||||++|+|++|+.||.....     ......+.. .....|..++
T Consensus       192 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-----~~~~~~~~~-~~~~~~~~~~  265 (335)
T 2owb_A          192 EYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCL-----KETYLRIKK-NEYSIPKHIN  265 (335)
T ss_dssp             CSTTCCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHHHHH-TCCCCCTTSC
T ss_pred             ccCcccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCH-----HHHHHHHhc-CCCCCCccCC
Confidence                                    2367799999999999999999999965322     111112222 2334566778


Q ss_pred             HHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          547 EELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       547 ~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ..+.+|+.+||+.|  |..|||+.++++.
T Consensus       266 ~~~~~li~~~l~~d--p~~Rps~~ell~~  292 (335)
T 2owb_A          266 PVAASLIQKMLQTD--PTARPTINELLND  292 (335)
T ss_dssp             HHHHHHHHHHTCSS--GGGSCCGGGGGGS
T ss_pred             HHHHHHHHHHccCC--hhHCcCHHHHhcC
Confidence            89999999999999  8899999999874

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=2.3e-35  Score=303.66  Aligned_cols=214  Identities=19%  Similarity=0.245  Sum_probs=175.4

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC---CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG---LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~---~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      .+.+|.|+||.||+|..  +|..||||++...   .....+.+|+.+++.++||||+++++++.+  ..++||||+++|+
T Consensus        12 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   91 (276)
T 2yex_A           12 VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGE   91 (276)
T ss_dssp             EEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEE
T ss_pred             EEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEEecCCCc
Confidence            35678999999999998  5899999998622   234678999999999999999999999865  6789999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++          .....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..    
T Consensus        92 L~~~l----------~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~  158 (276)
T 2yex_A           92 LFDRI----------EPDIGMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYN  158 (276)
T ss_dssp             GGGGS----------BTTTBCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTTCEECEET
T ss_pred             HHHHH----------hhccCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCChHHEEEccCCCEEEeeCCCccccCCC
Confidence            99999          345679999999999999999999999   6799999999999999999999999998742    


Q ss_pred             -----------------------cC-CCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC-CCCCCChhh
Q 005680          491 -----------------------DQ-LNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG-NAGIWPLDL  545 (683)
Q Consensus       491 -----------------------~~-~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~-~~~~~p~~~  545 (683)
                                             .. ++.++||||||+++|+|++|..||......    ...+..+... ........+
T Consensus       159 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~  234 (276)
T 2yex_A          159 NRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDS----CQEYSDWKEKKTYLNPWKKI  234 (276)
T ss_dssp             TEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTT----SHHHHHHHTTCTTSTTGGGS
T ss_pred             cchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchH----HHHHHHhhhcccccCchhhc
Confidence                                   11 356899999999999999999999643211    1111222222 111223467


Q ss_pred             HHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          546 AEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       546 ~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +..+.+|+.+||+.|  |..|||+.++++
T Consensus       235 ~~~~~~li~~~l~~~--p~~Rps~~~il~  261 (276)
T 2yex_A          235 DSAPLALLHKILVEN--PSARITIPDIKK  261 (276)
T ss_dssp             CHHHHHHHHHHSCSS--TTTSCCHHHHTT
T ss_pred             CHHHHHHHHHHCCCC--chhCCCHHHHhc
Confidence            889999999999999  889999988865

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=2e-35  Score=331.40  Aligned_cols=214  Identities=21%  Similarity=0.324  Sum_probs=178.5

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcC----CCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLN----NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~----~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      .+.+|.|+||.||+|..  +|..||||++.    .......+.+|+.+|++++|||||++++++.+  ..|+||||+++|
T Consensus        27 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~  106 (486)
T 3mwu_A           27 VCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGG  106 (486)
T ss_dssp             EEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSC
T ss_pred             eEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEEEcCCCC
Confidence            46778999999999998  58999999986    34456789999999999999999999999976  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccccc---CCCcEEEecCCCccc
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD---RNLVAKISGLGLNIC  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld---~~~~~KL~DFGla~~  490 (683)
                      +|.+++.          ....+++..+..|+.||+.||.|||+   .+|+||||||+|||++   .++.+||+|||++..
T Consensus       107 ~L~~~~~----------~~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~  173 (486)
T 3mwu_A          107 ELFDEII----------KRKRFSEHDAARIIKQVFSGITYMHK---HNIVHRDLKPENILLESKEKDCDIKIIDFGLSTC  173 (486)
T ss_dssp             BHHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTT
T ss_pred             cHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCchHHEEEecCCCCCCEEEEECCcCeE
Confidence            9999984          44579999999999999999999999   6799999999999995   456899999999853


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCC-C--CCChh
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNA-G--IWPLD  544 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~-~--~~p~~  544 (683)
                                             +.++.++|||||||++|+|++|.+||.....     ...+..+..... .  +....
T Consensus       174 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-----~~~~~~i~~~~~~~~~~~~~~  248 (486)
T 3mwu_A          174 FQQNTKMKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNE-----YDILKRVETGKYAFDLPQWRT  248 (486)
T ss_dssp             BCCC----CCTTGGGGCCGGGGGSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHTCCCSCSGGGGG
T ss_pred             CCCCCccCCCcCCCCCCCHHHhCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHHHhCCCCCCCcccCC
Confidence                                   3467899999999999999999999965322     122223333211 1  11235


Q ss_pred             hHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          545 LAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      +++.+.+||.+||+.|  |..|||+.++++.
T Consensus       249 ~s~~~~~li~~~L~~d--p~~R~t~~~~l~h  277 (486)
T 3mwu_A          249 ISDDAKDLIRKMLTFH--PSLRITATQCLEH  277 (486)
T ss_dssp             SCHHHHHHHHHHTCSS--TTTSCCHHHHHHC
T ss_pred             CCHHHHHHHHHHcCCC--hhhCcCHHHHhcC
Confidence            7889999999999999  8899999999874

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=1.6e-35  Score=309.09  Aligned_cols=215  Identities=18%  Similarity=0.295  Sum_probs=177.7

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcCC--CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLNN--GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~--~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      ..+.+|.|+||.||+|.+  +|..||+|++..  ......+.+|+.++..++||||+++++++.+  ..++||||+++|+
T Consensus        23 i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~  102 (302)
T 2j7t_A           23 IVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGA  102 (302)
T ss_dssp             EEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEECCTTEE
T ss_pred             ecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEeCCCCc
Confidence            345678999999999999  489999999872  3345789999999999999999999999865  7899999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++..         ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..    
T Consensus       103 l~~~~~~---------~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  170 (302)
T 2j7t_A          103 VDAIMLE---------LDRGLTEPQIQVVCRQMLEALNFLHS---KRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKT  170 (302)
T ss_dssp             HHHHHHH---------HTSCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHH
T ss_pred             HHHHHHh---------hccCCCHHHHHHHHHHHHHHHHHHhc---CCcccCCCCHHHEEECCCCCEEEEECCCCcccccc
Confidence            9999852         24569999999999999999999999   6799999999999999999999999998621    


Q ss_pred             --------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCC--CCCCC
Q 005680          491 --------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGN--AGIWP  542 (683)
Q Consensus       491 --------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~--~~~~p  542 (683)
                                                ..++.++||||||+++|+|++|.+||......     .....+....  ....+
T Consensus       171 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~  245 (302)
T 2j7t_A          171 LQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPM-----RVLLKIAKSDPPTLLTP  245 (302)
T ss_dssp             HHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHH-----HHHHHHHHSCCCCCSSG
T ss_pred             ccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHH-----HHHHHHhccCCcccCCc
Confidence                                      23567899999999999999999999753221     1122222222  22335


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ..++..+.+|+.+||..|  |..|||+.++++
T Consensus       246 ~~~~~~l~~li~~~l~~d--p~~Rps~~~ll~  275 (302)
T 2j7t_A          246 SKWSVEFRDFLKIALDKN--PETRPSAAQLLE  275 (302)
T ss_dssp             GGSCHHHHHHHHHHSCSC--TTTSCCHHHHTT
T ss_pred             cccCHHHHHHHHHHcccC--hhhCCCHHHHhc
Confidence            567889999999999999  889999998865

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=7.4e-36  Score=329.09  Aligned_cols=226  Identities=16%  Similarity=0.180  Sum_probs=179.9

Q ss_pred             HHHHHHhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceecccc
Q 005680          328 AEDIRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCS  400 (683)
Q Consensus       328 ~~ei~~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~  400 (683)
                      +.++...+++|... +++|+|+||.||+|..  +|+.||||+++..     .....+.+|+.++..++|||||+++++|.
T Consensus        53 ~~~~~~~~~~f~~~-~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~  131 (412)
T 2vd5_A           53 LKEVRLQRDDFEIL-KVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQ  131 (412)
T ss_dssp             HHHHSCCGGGEEEE-EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred             hhhccCChhhEEEE-EEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEe
Confidence            34455566777654 6778999999999998  6899999999621     12345889999999999999999999997


Q ss_pred             c--ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCC
Q 005680          401 E--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL  478 (683)
Q Consensus       401 ~--~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~  478 (683)
                      +  ..||||||++||+|.+++..         ....+++..+..|+.||+.||.|||+   .+|+||||||+||||+.+|
T Consensus       132 ~~~~~~lVmE~~~gg~L~~~l~~---------~~~~l~~~~~~~~~~qi~~aL~~LH~---~giiHrDLKp~NILld~~g  199 (412)
T 2vd5_A          132 DENYLYLVMEYYVGGDLLTLLSK---------FGERIPAEMARFYLAEIVMAIDSVHR---LGYVHRDIKPDNILLDRCG  199 (412)
T ss_dssp             CSSEEEEEECCCCSCBHHHHHHH---------HSSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTS
T ss_pred             eCCEEEEEEcCCCCCcHHHHHHh---------cCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecccCHHHeeecCCC
Confidence            6  78999999999999999942         23479999999999999999999999   6799999999999999999


Q ss_pred             cEEEecCCCccc---------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhh
Q 005680          479 VAKISGLGLNIC---------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMAL  525 (683)
Q Consensus       479 ~~KL~DFGla~~---------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~  525 (683)
                      ++||+|||+++.                                 ..++.++|||||||++|||++|++||.....    
T Consensus       200 ~vkL~DFGla~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~----  275 (412)
T 2vd5_A          200 HIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADST----  275 (412)
T ss_dssp             CEEECCCTTCEECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSH----
T ss_pred             CEEEeechhheeccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCH----
Confidence            999999999742                                 1367899999999999999999999965322    


Q ss_pred             hHHHHHHHhcC----CCCCCChhhHHHHHHHHHHhhhcCCCcccc---ccHHHHHH
Q 005680          526 DQTTLMQVLDG----NAGIWPLDLAEELAGIALKCLSADQDANRD---LRIAGVMK  574 (683)
Q Consensus       526 ~~~~~~~ild~----~~~~~p~~~~~~l~~Li~~CL~~dP~p~~R---Ps~~eVl~  574 (683)
                       ...+..++..    ..+..+..+++++.+||.+||. +  |..|   |++.+++.
T Consensus       276 -~~~~~~i~~~~~~~~~p~~~~~~s~~~~dli~~lL~-~--p~~Rlgr~~~~ei~~  327 (412)
T 2vd5_A          276 -AETYGKIVHYKEHLSLPLVDEGVPEEARDFIQRLLC-P--PETRLGRGGAGDFRT  327 (412)
T ss_dssp             -HHHHHHHHTHHHHCCCC----CCCHHHHHHHHTTSS-C--GGGCTTTTTHHHHHT
T ss_pred             -HHHHHHHHhcccCcCCCccccCCCHHHHHHHHHHcC-C--hhhcCCCCCHHHHhc
Confidence             1222222221    1222335688999999999998 8  5566   68877754

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=5.4e-36  Score=322.67  Aligned_cols=222  Identities=19%  Similarity=0.268  Sum_probs=179.8

Q ss_pred             cCccccccccccCCceEEEEEEE-----CCeeEEEEEcCC------CCCHHHHHHHHHHHHhc-CCCCccceeccccc--
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL-----NHASVAIKTLNN------GLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--  401 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~-----~g~~VAvK~l~~------~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--  401 (683)
                      ++|.. .+.+|+|+||.||+|..     +|+.||||+++.      ......+.+|+.+|..+ +||||+++++++.+  
T Consensus        54 ~~y~~-~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~  132 (355)
T 1vzo_A           54 ENFEL-LKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET  132 (355)
T ss_dssp             GGEEE-EEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred             cceEE-EEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence            45544 46678999999999997     579999999872      12346678899999999 69999999999865  


Q ss_pred             ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEE
Q 005680          402 LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAK  481 (683)
Q Consensus       402 ~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~K  481 (683)
                      ..+|||||+++|+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+||||+.++.+|
T Consensus       133 ~~~lv~e~~~~~~L~~~l~----------~~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~k  199 (355)
T 1vzo_A          133 KLHLILDYINGGELFTHLS----------QRERFTEHEVQIYVGEIVLALEHLHK---LGIIYRDIKLENILLDSNGHVV  199 (355)
T ss_dssp             EEEEEECCCCSCBHHHHHH----------HHSCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEE
T ss_pred             eEEEEeecCCCCCHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCcEE
Confidence            7899999999999999994          34569999999999999999999999   6799999999999999999999


Q ss_pred             EecCCCccc----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHH
Q 005680          482 ISGLGLNIC----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQV  533 (683)
Q Consensus       482 L~DFGla~~----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~i  533 (683)
                      |+|||+++.                            ..++.++|||||||++|+|+||+.||......  .....+...
T Consensus       200 l~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~--~~~~~~~~~  277 (355)
T 1vzo_A          200 LTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEK--NSQAEISRR  277 (355)
T ss_dssp             ESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSC--CCHHHHHHH
T ss_pred             EeeCCCCeecccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCcc--chHHHHHHH
Confidence            999998742                            12568899999999999999999999642211  111112222


Q ss_pred             hcCCCCCCChhhHHHHHHHHHHhhhcCCCccccc-----cHHHHHHH
Q 005680          534 LDGNAGIWPLDLAEELAGIALKCLSADQDANRDL-----RIAGVMKE  575 (683)
Q Consensus       534 ld~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RP-----s~~eVl~~  575 (683)
                      +......+|..++..+.+||.+||..|  |..||     |+.++++.
T Consensus       278 ~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~R~~~~~~s~~ell~h  322 (355)
T 1vzo_A          278 ILKSEPPYPQEMSALAKDLIQRLLMKD--PKKRLGCGPRDADEIKEH  322 (355)
T ss_dssp             HHHCCCCCCTTSCHHHHHHHHHHTCSS--GGGSTTSSTTTHHHHHTS
T ss_pred             HhccCCCCCcccCHHHHHHHHHHhhhC--HHHhcCCCCCCHHHHHcC
Confidence            222345567788899999999999999  88999     88887764

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=1.8e-35  Score=331.18  Aligned_cols=214  Identities=20%  Similarity=0.300  Sum_probs=179.7

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      .+++|+|+||.||+|..  +|..||||++..     ......+.+|+.++++++|||||+++++|.+  ..|+||||+.+
T Consensus        31 ~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~  110 (484)
T 3nyv_A           31 QRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTG  110 (484)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred             eeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEecCCC
Confidence            46779999999999998  689999999852     3346789999999999999999999999976  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccc---cCCCcEEEecCCCcc
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL---DRNLVAKISGLGLNI  489 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILl---d~~~~~KL~DFGla~  489 (683)
                      |+|.+++.          ....+++..+..|+.||+.||.|||+   .+|+||||||+|||+   +.++.+||+|||++.
T Consensus       111 ~~L~~~~~----------~~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~  177 (484)
T 3nyv_A          111 GELFDEII----------SRKRFSEVDAARIIRQVLSGITYMHK---NKIVHRDLKPENLLLESKSKDANIRIIDFGLST  177 (484)
T ss_dssp             CBHHHHHH----------TCSCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSTTCCEEECCTTHHH
T ss_pred             CCHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeE
Confidence            99999993          45679999999999999999999999   679999999999999   567899999999874


Q ss_pred             c-----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCC-CCC--CCh
Q 005680          490 C-----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGN-AGI--WPL  543 (683)
Q Consensus       490 ~-----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~-~~~--~p~  543 (683)
                      .                       +.++.++|||||||++|+|++|.+||.....     ...+..+.... ...  ...
T Consensus       178 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-----~~~~~~i~~~~~~~~~~~~~  252 (484)
T 3nyv_A          178 HFEASKKMKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGANE-----YDILKKVEKGKYTFELPQWK  252 (484)
T ss_dssp             HBCCCCSHHHHTTGGGTCCHHHHHTCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHCCCCCCSGGGG
T ss_pred             EcccccccccCCCCccccCceeecCCCCCcceeHHHHHHHHHHHHCCCCCCCCCH-----HHHHHHHHcCCCCCCCcccc
Confidence            2                       3578899999999999999999999975322     12222333322 111  123


Q ss_pred             hhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          544 DLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       544 ~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .+++.+.+|+.+||+.|  |..|||+.++++.
T Consensus       253 ~~s~~~~~li~~~L~~d--p~~R~s~~e~l~h  282 (484)
T 3nyv_A          253 KVSESAKDLIRKMLTYV--PSMRISARDALDH  282 (484)
T ss_dssp             GSCHHHHHHHHHHTCSS--GGGSCCHHHHHTS
T ss_pred             cCCHHHHHHHHHHCCCC--hhHCcCHHHHhhC
Confidence            67899999999999999  8899999999864

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=100.00  E-value=3.9e-36  Score=314.66  Aligned_cols=224  Identities=12%  Similarity=0.090  Sum_probs=178.2

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCC-----HHHHHHHHHHHHhcCCCCccceeccccc--ceeEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLS-----EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~-----~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV  406 (683)
                      +.|.. .+.+|+|+||.||+|.+  +|+.||||++.....     ...+.+|+.++.+++|||||++++++.+  ..|||
T Consensus        31 ~~y~i-~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv  109 (286)
T 3uqc_A           31 GRYRL-LIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVV  109 (286)
T ss_dssp             TTEEE-EEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             CcEEE-EEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEE
Confidence            34443 36778999999999998  489999999984322     2678999999999999999999999865  78999


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      |||++|++|.+++.          . . .....+..|+.||+.||.|||+   .+|+||||||+||||+.+|.+||+++|
T Consensus       110 ~e~~~g~~L~~~l~----------~-~-~~~~~~~~i~~ql~~aL~~lH~---~givH~Dikp~NIll~~~g~~kl~~~~  174 (286)
T 3uqc_A          110 AEWIRGGSLQEVAD----------T-S-PSPVGAIRAMQSLAAAADAAHR---AGVALSIDHPSRVRVSIDGDVVLAYPA  174 (286)
T ss_dssp             EECCCEEEHHHHHT----------T-C-CCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEEETTSCEEECSCC
T ss_pred             EEecCCCCHHHHHh----------c-C-CChHHHHHHHHHHHHHHHHHHH---CCCccCCCCcccEEEcCCCCEEEEecc
Confidence            99999999999993          2 1 2455688899999999999999   679999999999999999999999888


Q ss_pred             CccccCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCC---CCChhhHHHHHHHHHHhhhcCCCc
Q 005680          487 LNICDQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG---IWPLDLAEELAGIALKCLSADQDA  563 (683)
Q Consensus       487 la~~~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~---~~p~~~~~~l~~Li~~CL~~dP~p  563 (683)
                      ..  ..++.++|||||||++|+|+||+.||..........  .....+.....   ..+..+++.+.+|+.+||+.|  |
T Consensus       175 ~~--~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d--P  248 (286)
T 3uqc_A          175 TM--PDANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLA--PAERDTAGQPIEPADIDRDIPFQISAVAARSVQGD--G  248 (286)
T ss_dssp             CC--TTCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSE--ECCBCTTSCBCCHHHHCTTSCHHHHHHHHHHHCTT--S
T ss_pred             cc--CCCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhH--HHHHHhccCCCChhhcccCCCHHHHHHHHHHcccC--C
Confidence            65  568999999999999999999999996432110000  00000010000   112357789999999999999  7


Q ss_pred             cccccHHHHHHHHHHHHHh
Q 005680          564 NRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       564 ~~RPs~~eVl~~L~~l~~~  582 (683)
                      ..| |+.++++.|+.+...
T Consensus       249 ~~R-s~~el~~~L~~~~~~  266 (286)
T 3uqc_A          249 GIR-SASTLLNLMQQATAV  266 (286)
T ss_dssp             SCC-CHHHHHHHHHHHHC-
T ss_pred             ccC-CHHHHHHHHHHHhcc
Confidence            799 999999999998653

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=2.6e-35  Score=331.26  Aligned_cols=215  Identities=23%  Similarity=0.358  Sum_probs=174.7

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcCC----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLNN----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      ..+.+|+|+||.||+|..  ++..||||++..    ......+.+|+.+++.++|||||+++++|.+  ..|||||||++
T Consensus        41 ~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~  120 (494)
T 3lij_A           41 RVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKG  120 (494)
T ss_dssp             EEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCCS
T ss_pred             EeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCC
Confidence            346778999999999998  688999999872    2335678999999999999999999999976  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC---CCcEEEecCCCcc
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR---NLVAKISGLGLNI  489 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~---~~~~KL~DFGla~  489 (683)
                      |+|.+++.          ....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.   ++.+||+|||++.
T Consensus       121 g~L~~~~~----------~~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~  187 (494)
T 3lij_A          121 GELFDEII----------HRMKFNEVDAAVIIKQVLSGVTYLHK---HNIVHRDLKPENLLLESKEKDALIKIVDFGLSA  187 (494)
T ss_dssp             CBHHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCSSTTCCEEECCCTTCE
T ss_pred             CcHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCChhhEEEeCCCCCCcEEEEECCCCe
Confidence            99999983          44579999999999999999999999   67999999999999976   4569999999974


Q ss_pred             c-----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCC---CCCh
Q 005680          490 C-----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG---IWPL  543 (683)
Q Consensus       490 ~-----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~---~~p~  543 (683)
                      .                       ..++.++|||||||++|+|++|.+||.....     ...+..+......   +...
T Consensus       188 ~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-----~~~~~~i~~~~~~~~~~~~~  262 (494)
T 3lij_A          188 VFENQKKMKERLGTAYYIAPEVLRKKYDEKCDVWSIGVILFILLAGYPPFGGQTD-----QEILRKVEKGKYTFDSPEWK  262 (494)
T ss_dssp             ECBTTBCBCCCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHTCCCCCSGGGT
T ss_pred             ECCCCccccccCCCcCeeCHHHHcccCCCchhHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHHHhCCCCCCchhcc
Confidence            3                       3478899999999999999999999975322     1222233332211   1113


Q ss_pred             hhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          544 DLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       544 ~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .+++.+.+|+.+||+.|  |..|||+.++++.
T Consensus       263 ~~s~~~~~li~~~L~~d--p~~R~s~~e~l~h  292 (494)
T 3lij_A          263 NVSEGAKDLIKQMLQFD--SQRRISAQQALEH  292 (494)
T ss_dssp             TSCHHHHHHHHHHTCSS--TTTSCCHHHHHTC
T ss_pred             cCCHHHHHHHHHHCCCC--hhhCccHHHHhcC
Confidence            57889999999999999  8899999999864

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=4.4e-35  Score=330.19  Aligned_cols=218  Identities=22%  Similarity=0.374  Sum_probs=177.7

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC---------------CCHHHHHHHHHHHHhcCCCCccceecc
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG---------------LSEEDFQAKVSFLTAVRHPHLVAVMGC  398 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~---------------~~~~~~~~Ev~iL~~l~HpnIV~l~g~  398 (683)
                      +.|.. .+.+|.|+||.||+|..  ++..||||++...               .....+.+|+.+|++++|||||+++++
T Consensus        36 ~~Y~~-~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~  114 (504)
T 3q5i_A           36 ESYFK-VRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV  114 (504)
T ss_dssp             GTEEE-EEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             cceEE-EeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence            44444 46778999999999998  5789999998632               234678999999999999999999999


Q ss_pred             ccc--ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC
Q 005680          399 CSE--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR  476 (683)
Q Consensus       399 ~~~--~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~  476 (683)
                      |.+  ..|||||||+||+|.+++.          ....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.
T Consensus       115 ~~~~~~~~lv~e~~~gg~L~~~l~----------~~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~  181 (504)
T 3q5i_A          115 FEDKKYFYLVTEFYEGGELFEQII----------NRHKFDECDAANIMKQILSGICYLHK---HNIVHRDIKPENILLEN  181 (504)
T ss_dssp             EECSSEEEEEEECCTTCBHHHHHH----------HHSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESS
T ss_pred             EEcCCEEEEEEecCCCCcHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCcHHHEEEec
Confidence            976  6899999999999999994          44569999999999999999999999   67999999999999987


Q ss_pred             CC---cEEEecCCCccc-----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHH
Q 005680          477 NL---VAKISGLGLNIC-----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTL  530 (683)
Q Consensus       477 ~~---~~KL~DFGla~~-----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~  530 (683)
                      ++   .+||+|||++..                       ..++.++|||||||++|+|++|.+||.....     ...+
T Consensus       182 ~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-----~~~~  256 (504)
T 3q5i_A          182 KNSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVLKKKYNEKCDVWSCGVIMYILLCGYPPFGGQND-----QDII  256 (504)
T ss_dssp             TTCCSSEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHH
T ss_pred             CCCCccEEEEECCCCEEcCCCCccccccCCcCCCCHHHhccCCCchHHHHHHHHHHHHHHhCCCCCCCCCH-----HHHH
Confidence            76   699999999853                       3468899999999999999999999975322     2222


Q ss_pred             HHHhcCCCCCCC----hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          531 MQVLDGNAGIWP----LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       531 ~~ild~~~~~~p----~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ..+.... ..++    ..+++.+.+|+.+||..|  |..|||+.++++.
T Consensus       257 ~~i~~~~-~~~~~~~~~~~s~~~~~li~~~L~~d--p~~R~t~~e~l~h  302 (504)
T 3q5i_A          257 KKVEKGK-YYFDFNDWKNISDEAKELIKLMLTYD--YNKRCTAEEALNS  302 (504)
T ss_dssp             HHHHHCC-CCCCHHHHTTSCHHHHHHHHHHTCSS--TTTSCCHHHHHTS
T ss_pred             HHHHcCC-CCCCccccCCCCHHHHHHHHHHcCCC--hhHCCCHHHHhcC
Confidence            2333322 1222    346789999999999999  8899999999864

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=317.12  Aligned_cols=216  Identities=16%  Similarity=0.268  Sum_probs=177.4

Q ss_pred             ccccccccCCceEEEEEEE-CCeeEEEEEcCCC-CC---HHHHHHHHHHHHhcCC--CCccceeccccc--ceeEEEeec
Q 005680          340 ERFRLKCAGDWTNVYRGRL-NHASVAIKTLNNG-LS---EEDFQAKVSFLTAVRH--PHLVAVMGCCSE--LKCIVFEYM  410 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~-~g~~VAvK~l~~~-~~---~~~~~~Ev~iL~~l~H--pnIV~l~g~~~~--~~~LV~Ey~  410 (683)
                      ...+.+|+|+||.||+|.. ++..||||++... ..   ...+.+|+.+|.+++|  |||+++++++.+  ..+|||| +
T Consensus        12 ~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~e-~   90 (343)
T 3dbq_A           12 SILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-C   90 (343)
T ss_dssp             EEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEC-C
T ss_pred             EEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEEe-C
Confidence            4456789999999999988 6789999998732 22   3568899999999986  999999999866  7899999 5


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~  490 (683)
                      .+|+|.+++.          ....+++..+..|+.||+.||.|||+   .+|+||||||+|||++ ++.+||+|||+++.
T Consensus        91 ~~~~L~~~l~----------~~~~~~~~~~~~i~~qi~~al~~lH~---~~iiHrDikp~NIll~-~~~~kl~DFG~a~~  156 (343)
T 3dbq_A           91 GNIDLNSWLK----------KKKSIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIV-DGMLKLIDFGIANQ  156 (343)
T ss_dssp             CSEEHHHHHH----------HSCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEE-TTEEEECCCSSSCC
T ss_pred             CCCCHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCcceEEEE-CCcEEEeecccccc
Confidence            5789999994          45679999999999999999999999   6799999999999997 67899999999842


Q ss_pred             --------------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHH
Q 005680          491 --------------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQ  532 (683)
Q Consensus       491 --------------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~  532 (683)
                                                            ..++.++|||||||++|+|++|++||.....    ....+..
T Consensus       157 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~----~~~~~~~  232 (343)
T 3dbq_A          157 MQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN----QISKLHA  232 (343)
T ss_dssp             C------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCS----HHHHHHH
T ss_pred             cCcccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhh----HHHHHHH
Confidence                                                  1256789999999999999999999964211    1122334


Q ss_pred             HhcC-CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHH
Q 005680          533 VLDG-NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKEL  576 (683)
Q Consensus       533 ild~-~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L  576 (683)
                      ++++ ....+|...+..+.+|+.+||+.|  |..|||+.++++..
T Consensus       233 ~~~~~~~~~~~~~~~~~l~~li~~~L~~d--p~~Rpt~~e~l~hp  275 (343)
T 3dbq_A          233 IIDPNHEIEFPDIPEKDLQDVLKCCLKRD--PKQRISIPELLAHP  275 (343)
T ss_dssp             HHCTTSCCCCCCCSCHHHHHHHHHHTCSS--TTTSCCHHHHHTSH
T ss_pred             HhcCCcccCCcccCCHHHHHHHHHHcCCC--hhHCCCHHHHHhCc
Confidence            4443 445566677789999999999999  88999999998753

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=3e-35  Score=334.61  Aligned_cols=221  Identities=21%  Similarity=0.320  Sum_probs=181.1

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV  406 (683)
                      ++|. ..+++|+|+||.||+|..  +|+.||||++..     ......+.+|+.+|.+++|||||++++++.+  ..|||
T Consensus       185 ~~f~-~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV  263 (543)
T 3c4z_A          185 DWFL-DFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLV  263 (543)
T ss_dssp             GGEE-EEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hheE-EEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEE
Confidence            3443 346789999999999998  689999999962     2345678999999999999999999999866  78999


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      |||++||+|.+++....      .....+++..+..|+.||+.||.|||+   .+|+||||||+||||+.+|.+||+|||
T Consensus       264 mE~~~gg~L~~~l~~~~------~~~~~l~e~~~~~~~~qi~~aL~~LH~---~gIvHrDLKP~NILl~~~g~vkL~DFG  334 (543)
T 3c4z_A          264 MTIMNGGDIRYHIYNVD------EDNPGFQEPRAIFYTAQIVSGLEHLHQ---RNIIYRDLKPENVLLDDDGNVRISDLG  334 (543)
T ss_dssp             ECCCTTCBHHHHHHTSS------TTSCSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCT
T ss_pred             EEeccCCCHHHHHHHhh------cccccccHHHHHHHHHHHHHHHHHHHH---cCCcccCCChHHEEEeCCCCEEEeecc
Confidence            99999999999995431      224579999999999999999999999   679999999999999999999999999


Q ss_pred             Cccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCC
Q 005680          487 LNIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIW  541 (683)
Q Consensus       487 la~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~  541 (683)
                      +++.                         ..++.++|||||||++|+|+||++||....... ........++. ....+
T Consensus       335 la~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~-~~~~~~~~i~~-~~~~~  412 (543)
T 3c4z_A          335 LAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKV-ENKELKQRVLE-QAVTY  412 (543)
T ss_dssp             TCEECCTTCCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCC-CHHHHHHHHHH-CCCCC
T ss_pred             eeeeccCCCcccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccch-hHHHHHHHHhh-cccCC
Confidence            9842                         247889999999999999999999997532100 11112222332 34456


Q ss_pred             ChhhHHHHHHHHHHhhhcCCCccccccHH
Q 005680          542 PLDLAEELAGIALKCLSADQDANRDLRIA  570 (683)
Q Consensus       542 p~~~~~~l~~Li~~CL~~dP~p~~RPs~~  570 (683)
                      |..++..+.+||.+||..|  |..||++.
T Consensus       413 p~~~s~~~~~li~~lL~~d--P~~R~~~~  439 (543)
T 3c4z_A          413 PDKFSPASKDFCEALLQKD--PEKRLGFR  439 (543)
T ss_dssp             CTTSCHHHHHHHHHHSCSS--GGGSCCCB
T ss_pred             CcccCHHHHHHHHHhccCC--HhHCCCCc
Confidence            7788999999999999999  88999753

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=1.9e-35  Score=317.56  Aligned_cols=224  Identities=20%  Similarity=0.247  Sum_probs=179.6

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEe
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFE  408 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~E  408 (683)
                      ++|.. .+.+|.|+||.||+|.+  +|..||+|++.....   ...+.+|+.++..++||||+++++++.+  ..+||||
T Consensus        33 ~~y~~-~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  111 (360)
T 3eqc_A           33 DDFEK-ISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME  111 (360)
T ss_dssp             GGEEE-EEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             cccee-eeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEE
Confidence            34433 45678999999999999  589999999974433   3578899999999999999999999865  7899999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCC-cEEeccCCCCcccccCCCcEEEecCCC
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPR-PIVHGSLTPSSILLDRNLVAKISGLGL  487 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~-~IiHrDLKP~NILld~~~~~KL~DFGl  487 (683)
                      |+++|+|.+++.          ....+++..+..|+.+|+.||.|||+   . +|+||||||+|||++.++.+||+|||+
T Consensus       112 ~~~~~~L~~~l~----------~~~~~~~~~~~~i~~~i~~~l~~lh~---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~  178 (360)
T 3eqc_A          112 HMDGGSLDQVLK----------KAGRIPEQILGKVSIAVIKGLTYLRE---KHKIMHRDVKPSNILVNSRGEIKLCDFGV  178 (360)
T ss_dssp             CCTTCBHHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHH---HHCCCCSCCSGGGEEECTTCCEEECCCCC
T ss_pred             CCCCCCHHHHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---hCCEEcCCccHHHEEECCCCCEEEEECCC
Confidence            999999999994          34569999999999999999999998   4 699999999999999999999999998


Q ss_pred             ccc-----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhh-------------------
Q 005680          488 NIC-----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMAL-------------------  525 (683)
Q Consensus       488 a~~-----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~-------------------  525 (683)
                      +..                       ..++.++|||||||++|+|+||+.||.........                   
T Consensus       179 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (360)
T 3eqc_A          179 SGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPR  258 (360)
T ss_dssp             CHHHHHHC----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC---------------
T ss_pred             CcccccccccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcc
Confidence            742                       34788999999999999999999998532210000                   


Q ss_pred             ------------------hHHHHHHHhcCCCCCCC-hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          526 ------------------DQTTLMQVLDGNAGIWP-LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       526 ------------------~~~~~~~ild~~~~~~p-~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                                        ....+..+........+ ..++..+.+|+.+||+.|  |.+|||+.++++.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~Rpt~~ell~h  325 (360)
T 3eqc_A          259 TPGRPLNKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKN--PAERADLKQLMVH  325 (360)
T ss_dssp             ---------------CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSS--TTTSCCHHHHHTS
T ss_pred             cCCCcccccccCCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcC--hhhCCCHHHHhhC
Confidence                              00111222222222222 346789999999999999  8899999999875

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=1.2e-34  Score=306.76  Aligned_cols=214  Identities=18%  Similarity=0.266  Sum_probs=171.8

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcC-CCCccceeccccc----ceeEEEeecCCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVR-HPHLVAVMGCCSE----LKCIVFEYMPNGN  414 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~-HpnIV~l~g~~~~----~~~LV~Ey~~ggs  414 (683)
                      .+.+|+|+||.||+|..  +|+.||||++.. .....+.+|+.++.+++ ||||+++++++.+    ..++||||+++++
T Consensus        41 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~-~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~  119 (330)
T 3nsz_A           41 VRKLGRGKYSEVFEAINITNNEKVVVKILKP-VKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTD  119 (330)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEECS-CCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEEECCCCCC
T ss_pred             EEEecccCCeEEEEEEECCCCcEEEEEEecc-cchHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEEeccCchh
Confidence            46778999999999987  689999999963 44678999999999997 9999999999864    5799999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCC-cEEEecCCCccc---
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL-VAKISGLGLNIC---  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~-~~KL~DFGla~~---  490 (683)
                      |.+++.             .+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++ .+||+|||+++.   
T Consensus       120 l~~~~~-------------~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~  183 (330)
T 3nsz_A          120 FKQLYQ-------------TLTDYDIRFYMYEILKALDYCHS---MGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHP  183 (330)
T ss_dssp             HHHHGG-------------GCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTTEEEECCCTTCEECCT
T ss_pred             HHHHHH-------------hCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCC
Confidence            998882             38899999999999999999999   6799999999999999776 899999999852   


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHH--------HhhhhHHHHHHHhcCCC--
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEK--------AMALDQTTLMQVLDGNA--  538 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~--------~~~~~~~~~~~ild~~~--  538 (683)
                                            ..++.++|||||||++|+|++|+.||.....        ........+...++...  
T Consensus       184 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  263 (330)
T 3nsz_A          184 GQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIE  263 (330)
T ss_dssp             TCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCC
T ss_pred             CCccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhccc
Confidence                                  2468899999999999999999999832110        00001111111111111  


Q ss_pred             ----------------------CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          539 ----------------------GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       539 ----------------------~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                                            ...+..+++.+.+|+.+||+.|  |..|||+.++++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~Rpta~e~l~  319 (330)
T 3nsz_A          264 LDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYD--HQSRLTAREAME  319 (330)
T ss_dssp             CCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSS--GGGSCCHHHHHT
T ss_pred             cccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCC--cccCCCHHHHhc
Confidence                                  1112236889999999999999  889999999875

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=1.8e-35  Score=317.62  Aligned_cols=215  Identities=20%  Similarity=0.313  Sum_probs=173.1

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEEeecCCCCch
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVFEYMPNGNLR  416 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~  416 (683)
                      .+.+|.|+||.||+|..  +|..||||++....  ..+.+|+.++.++ +|||||++++++.+  ..|+||||++||+|.
T Consensus        27 ~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~gg~L~  104 (342)
T 2qr7_A           27 KEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSK--RDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGGELL  104 (342)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEEETTT--CCCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCCSCBHH
T ss_pred             EEEEeeCCCEEEEEEEECCCCCEEEEEEEEccc--CChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEeCCCCCcHH
Confidence            35678999999999998  58999999997432  2346788899888 79999999999976  789999999999999


Q ss_pred             hhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC----CcEEEecCCCccc--
Q 005680          417 DKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN----LVAKISGLGLNIC--  490 (683)
Q Consensus       417 ~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~----~~~KL~DFGla~~--  490 (683)
                      +++.          ....+++..+..|+.||+.||.|||+   .+|+||||||+|||+..+    +.+||+|||+++.  
T Consensus       105 ~~i~----------~~~~~~~~~~~~~~~qi~~al~~lH~---~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~  171 (342)
T 2qr7_A          105 DKIL----------RQKFFSEREASAVLFTITKTVEYLHA---QGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLR  171 (342)
T ss_dssp             HHHH----------TCTTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECB
T ss_pred             HHHH----------HcCCCCHHHHHHHHHHHHHHHHHHHH---CCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCc
Confidence            9993          44679999999999999999999999   679999999999998432    3599999999853  


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCC---CCCCChh
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGN---AGIWPLD  544 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~---~~~~p~~  544 (683)
                                             ..++.++|||||||++|+|++|.+||......  .....+..+..+.   ....+..
T Consensus       172 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~  249 (342)
T 2qr7_A          172 AENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDD--TPEEILARIGSGKFSLSGGYWNS  249 (342)
T ss_dssp             CTTCCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTS--CHHHHHHHHHHCCCCCCSTTTTT
T ss_pred             CCCCceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcC--CHHHHHHHHccCCcccCcccccc
Confidence                                   12567899999999999999999999642110  1122222333221   1223346


Q ss_pred             hHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          545 LAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ++..+.+|+.+||..|  |.+|||+.++++.
T Consensus       250 ~s~~~~~li~~~L~~d--P~~R~t~~~il~h  278 (342)
T 2qr7_A          250 VSDTAKDLVSKMLHVD--PHQRLTAALVLRH  278 (342)
T ss_dssp             SCHHHHHHHHHHTCSS--TTTSCCHHHHTTS
T ss_pred             CCHHHHHHHHHHCCCC--hhHCcCHHHHhcC
Confidence            7899999999999999  8899999998764

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=3.6e-35  Score=323.71  Aligned_cols=219  Identities=19%  Similarity=0.271  Sum_probs=174.8

Q ss_pred             hcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC----------CHHHHHHHHHHHHhcCCCCccceeccccc-
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----------SEEDFQAKVSFLTAVRHPHLVAVMGCCSE-  401 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----------~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-  401 (683)
                      .++|. ..+.+|+|+||.||+|..  ++..||||++....          ....+.+|+.+|++++|||||++++++.. 
T Consensus       134 ~~~y~-~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~  212 (419)
T 3i6u_A          134 RDEYI-MSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE  212 (419)
T ss_dssp             HTTEE-EEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEESS
T ss_pred             hccEE-EEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEecC
Confidence            34453 346778999999999998  57899999986211          11358899999999999999999999865 


Q ss_pred             ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC---C
Q 005680          402 LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN---L  478 (683)
Q Consensus       402 ~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~---~  478 (683)
                      ..|+||||+++|+|.+++          .....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.+   +
T Consensus       213 ~~~lv~e~~~~g~L~~~l----------~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~ivHrDlkp~NIll~~~~~~~  279 (419)
T 3i6u_A          213 DYYIVLELMEGGELFDKV----------VGNKRLKEATCKLYFYQMLLAVQYLHE---NGIIHRDLKPENVLLSSQEEDC  279 (419)
T ss_dssp             EEEEEEECCTTCBGGGGT----------SSSCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSSSC
T ss_pred             ceEEEEEcCCCCcHHHHH----------hccCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChHhEEEecCCCcc
Confidence            789999999999999998          355679999999999999999999999   679999999999999754   4


Q ss_pred             cEEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHH
Q 005680          479 VAKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLM  531 (683)
Q Consensus       479 ~~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~  531 (683)
                      .+||+|||+++.                           ..++.++|||||||++|+|+||.+||.....     ...+.
T Consensus       280 ~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~-----~~~~~  354 (419)
T 3i6u_A          280 LIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRT-----QVSLK  354 (419)
T ss_dssp             CEEECCSSTTTSCC-----------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSS-----SCCHH
T ss_pred             eEEEeecccceecCCCccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcc-----hHHHH
Confidence            599999999853                           2356789999999999999999999964221     11111


Q ss_pred             HHhcCCCCCCC----hhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          532 QVLDGNAGIWP----LDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       532 ~ild~~~~~~p----~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ..+......++    ..+++.+.+|+.+||+.|  |..|||+.++++
T Consensus       355 ~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~Rps~~e~l~  399 (419)
T 3i6u_A          355 DQITSGKYNFIPEVWAEVSEKALDLVKKLLVVD--PKARFTTEEALR  399 (419)
T ss_dssp             HHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSS--TTTSCCHHHHHH
T ss_pred             HHHhcCCCCCCchhhcccCHHHHHHHHHHccCC--hhHCcCHHHHhC
Confidence            12222222222    246789999999999999  889999999876

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=8.8e-35  Score=338.40  Aligned_cols=222  Identities=25%  Similarity=0.358  Sum_probs=188.6

Q ss_pred             ccccccCCceEEEEEEEC-----CeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRLN-----HASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~-----g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~g  412 (683)
                      .+.+|+|+||.||+|.+.     +..||||.+.....   .+.+.+|+.++++++|||||+++|++.+ ..|+||||+++
T Consensus       395 ~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~lv~E~~~~  474 (656)
T 2j0j_A          395 GRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTL  474 (656)
T ss_dssp             EEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTT
T ss_pred             eeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCceEEEEEcCCC
Confidence            456789999999999982     46799999874333   2678999999999999999999999966 78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++..         ....+++..++.|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++.  
T Consensus       475 g~L~~~l~~---------~~~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDikp~NILl~~~~~vkL~DFG~a~~~~  542 (656)
T 2j0j_A          475 GELRSFLQV---------RKFSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYME  542 (656)
T ss_dssp             CBHHHHHHH---------TTTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCCCCCCSCC
T ss_pred             CcHHHHHHh---------ccCCCCHHHHHHHHHHHHHHHHHHHh---CCccccccchHhEEEeCCCCEEEEecCCCeecC
Confidence            999999952         33468999999999999999999999   6799999999999999999999999999853  


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhh
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDL  545 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~  545 (683)
                                              ..++.++|||||||++|||++ |.+||.....     ...+..+........|..+
T Consensus       543 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~-----~~~~~~i~~~~~~~~~~~~  617 (656)
T 2j0j_A          543 DSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN-----NDVIGRIENGERLPMPPNC  617 (656)
T ss_dssp             C----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH-----HHHHHHHHHTCCCCCCTTC
T ss_pred             CCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCH-----HHHHHHHHcCCCCCCCccc
Confidence                                    246788999999999999997 9999975322     2233344445556677788


Q ss_pred             HHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          546 AEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       546 ~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      ++.+.+|+.+||..|  |..|||+.++++.|+.+...
T Consensus       618 ~~~l~~li~~~l~~d--P~~RPs~~el~~~L~~il~~  652 (656)
T 2j0j_A          618 PPTLYSLMTKCWAYD--PSRRPRFTELKAQLSTILEE  652 (656)
T ss_dssp             CHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHcCCC--hhHCcCHHHHHHHHHHHHHH
Confidence            999999999999999  88999999999999998653

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=3.1e-36  Score=326.70  Aligned_cols=221  Identities=14%  Similarity=0.097  Sum_probs=170.2

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHH---HHHHhcCCCCccceecccc-------c---
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKV---SFLTAVRHPHLVAVMGCCS-------E---  401 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev---~iL~~l~HpnIV~l~g~~~-------~---  401 (683)
                      .+.+|.|+||.||+|.+  +|+.||||++..     ....+.+.+|+   .+|++++|||||++++.+.       +   
T Consensus        78 ~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~~~~~~~  157 (377)
T 3byv_A           78 GTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQK  157 (377)
T ss_dssp             EEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEEEECTTS
T ss_pred             cceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhhhhccCC
Confidence            46778999999999996  589999999862     22346789999   5556668999999995443       1   


Q ss_pred             ----------------ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEec
Q 005680          402 ----------------LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHG  465 (683)
Q Consensus       402 ----------------~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHr  465 (683)
                                      ..||||||+ +|+|.+++......   ......+++..++.|+.||+.||.|||+   .+|+||
T Consensus       158 ~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~---~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivHr  230 (377)
T 3byv_A          158 KKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSH---SSTHKSLVHHARLQLTLQVIRLLASLHH---YGLVHT  230 (377)
T ss_dssp             CSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHT---TTTTHHHHHHHHHHHHHHHHHHHHHHHH---TTEECS
T ss_pred             ccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhcccc---ccccccccHHHHHHHHHHHHHHHHHHHh---CCeecC
Confidence                            278999999 68999999643110   0112446678999999999999999999   679999


Q ss_pred             cCCCCcccccCCCcEEEecCCCccc---------------------c-----------CCCcccccccHHHHHHHHhhCC
Q 005680          466 SLTPSSILLDRNLVAKISGLGLNIC---------------------D-----------QLNVRSDIRAFGTLLLHLLTGR  513 (683)
Q Consensus       466 DLKP~NILld~~~~~KL~DFGla~~---------------------~-----------~~t~ksDVwSlGviL~eLltG~  513 (683)
                      ||||+||||+.++.+||+|||+++.                     .           .++.++|||||||++|+|+||+
T Consensus       231 Dikp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~g~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~  310 (377)
T 3byv_A          231 YLRPVDIVLDQRGGVFLTGFEHLVRDGARVVSSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCAD  310 (377)
T ss_dssp             CCCGGGEEECTTCCEEECCGGGCEETTCEEECCCCTTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCHHHEEEcCCCCEEEEechhheecCCcccCCCCcCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHHCC
Confidence            9999999999999999999999853                     2           5889999999999999999999


Q ss_pred             CCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH--HHHHHHH
Q 005680          514 NWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK--ELDEVRK  581 (683)
Q Consensus       514 ~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~--~L~~l~~  581 (683)
                      +||.......     ....+..     .+..+++.+.+|+.+||+.|  |..|||+.++++  .+..+..
T Consensus       311 ~Pf~~~~~~~-----~~~~~~~-----~~~~~~~~~~~li~~~L~~d--p~~Rpt~~e~l~hp~f~~~~~  368 (377)
T 3byv_A          311 LPITKDAALG-----GSEWIFR-----SCKNIPQPVRALLEGFLRYP--KEDRLLPLQAMETPEYEQLRT  368 (377)
T ss_dssp             CCC------C-----CSGGGGS-----SCCCCCHHHHHHHHHHTCSS--GGGCCCHHHHHTSHHHHHHHH
T ss_pred             CCCccccccc-----chhhhhh-----hccCCCHHHHHHHHHHcCCC--chhCCCHHHHhhChHHHHHHH
Confidence            9996532210     0011111     12356788999999999999  889999999986  4555443

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=302.94  Aligned_cols=214  Identities=20%  Similarity=0.241  Sum_probs=175.7

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCC------CCCHHHHHHHHHHHHhcCCCCccceecccc--c--ceeEEEee
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNN------GLSEEDFQAKVSFLTAVRHPHLVAVMGCCS--E--LKCIVFEY  409 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~------~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~--~--~~~LV~Ey  409 (683)
                      .+.+|+|+||.||+|..  ++..||||++..      ......+.+|+.++.+++||||+++++++.  +  ..++||||
T Consensus        10 ~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~   89 (305)
T 2wtk_C           10 GDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMYMVMEY   89 (305)
T ss_dssp             CCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CEEEEEEC
T ss_pred             eeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeEEEEehh
Confidence            35678999999999998  678999999972      233567999999999999999999999983  3  67999999


Q ss_pred             cCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCcc
Q 005680          410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNI  489 (683)
Q Consensus       410 ~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~  489 (683)
                      +++| |.+++...        ....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++.
T Consensus        90 ~~~~-l~~~~~~~--------~~~~~~~~~~~~~~~qi~~al~~LH~---~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~  157 (305)
T 2wtk_C           90 CVCG-MQEMLDSV--------PEKRFPVCQAHGYFCQLIDGLEYLHS---QGIVHKDIKPGNLLLTTGGTLKISALGVAE  157 (305)
T ss_dssp             CSEE-HHHHHHHS--------TTCSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             ccCC-HHHHHHhC--------cccccCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCcccEEEcCCCcEEeecccccc
Confidence            9866 77777432        34579999999999999999999999   679999999999999999999999999974


Q ss_pred             c-----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCC
Q 005680          490 C-----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGI  540 (683)
Q Consensus       490 ~-----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~  540 (683)
                      .                             ..++.++||||||+++|+|++|+.||.....     ......+ ......
T Consensus       158 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----~~~~~~i-~~~~~~  231 (305)
T 2wtk_C          158 ALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNI-----YKLFENI-GKGSYA  231 (305)
T ss_dssp             ECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSH-----HHHHHHH-HHCCCC
T ss_pred             ccCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHH-hcCCCC
Confidence            3                             0125689999999999999999999975321     1111222 222345


Q ss_pred             CChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          541 WPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       541 ~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .+..+++.+.+|+.+||..|  |..|||+.++++.
T Consensus       232 ~~~~~~~~l~~li~~~l~~d--p~~Rps~~~ll~~  264 (305)
T 2wtk_C          232 IPGDCGPPLSDLLKGMLEYE--PAKRFSIRQIRQH  264 (305)
T ss_dssp             CCSSSCHHHHHHHHHHTCSS--TTTSCCHHHHHHS
T ss_pred             CCCccCHHHHHHHHHHccCC--hhhCCCHHHHhcC
Confidence            56678899999999999999  8899999999875

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=1.7e-35  Score=316.95  Aligned_cols=224  Identities=17%  Similarity=0.113  Sum_probs=168.9

Q ss_pred             ccccccccCCceEEEEEEE-----CCeeEEEEEcCCCCC-------------HHHHHHHHHHHHhcCCCCccceeccccc
Q 005680          340 ERFRLKCAGDWTNVYRGRL-----NHASVAIKTLNNGLS-------------EEDFQAKVSFLTAVRHPHLVAVMGCCSE  401 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~-----~g~~VAvK~l~~~~~-------------~~~~~~Ev~iL~~l~HpnIV~l~g~~~~  401 (683)
                      ...+.+|+|+||.||+|.+     ++..||||++.....             ...+.+|+.++..++||||+++++++.+
T Consensus        40 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~~~~  119 (345)
T 2v62_A           40 VLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGSGLT  119 (345)
T ss_dssp             EEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEEEEE
T ss_pred             EEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeeccccc
Confidence            3346778999999999998     457899999874321             1346678888999999999999998743


Q ss_pred             ------ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccccc
Q 005680          402 ------LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD  475 (683)
Q Consensus       402 ------~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld  475 (683)
                            ..||||||+ +++|.+++.          ....+++..++.|+.||+.||.|||+   .+|+||||||+|||++
T Consensus       120 ~~~~~~~~~lv~e~~-~~~L~~~l~----------~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~  185 (345)
T 2v62_A          120 EFKGRSYRFMVMERL-GIDLQKISG----------QNGTFKKSTVLQLGIRMLDVLEYIHE---NEYVHGDIKAANLLLG  185 (345)
T ss_dssp             ESSSCEEEEEEEECE-EEEHHHHCB----------GGGBCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEE
T ss_pred             ccCCCcEEEEEEecc-CCCHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCcCHHHEEEc
Confidence                  679999999 999999993          34489999999999999999999999   6799999999999999


Q ss_pred             CCC--cEEEecCCCccc--------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHH
Q 005680          476 RNL--VAKISGLGLNIC--------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEK  521 (683)
Q Consensus       476 ~~~--~~KL~DFGla~~--------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~  521 (683)
                      .++  .+||+|||+++.                                ..++.++|||||||++|+|+||+.||.....
T Consensus       186 ~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~  265 (345)
T 2v62_A          186 YKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLK  265 (345)
T ss_dssp             SSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTT
T ss_pred             cCCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCcccccc
Confidence            887  999999999842                                2368899999999999999999999953211


Q ss_pred             HhhhhHHHHHHHhcCCCC-----CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          522 AMALDQTTLMQVLDGNAG-----IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       522 ~~~~~~~~~~~ild~~~~-----~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                      ..................     ..+..++..+.+|+.+||..|  |..|||+.+|++.|+.+
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d--p~~Rps~~~l~~~L~~~  326 (345)
T 2v62_A          266 DPVAVQTAKTNLLDELPQSVLKWAPSGSSCCEIAQFLVCAHSLA--YDEKPNYQALKKILNPH  326 (345)
T ss_dssp             CHHHHHHHHHHHHHTTTHHHHHHSCTTSCCHHHHHHHHHHHTCC--TTCCCCHHHHHHHHCTT
T ss_pred             ccHHHHHHHHhhcccccHHHHhhccccccHHHHHHHHHHHhhcC--cccCCCHHHHHHHHhcc
Confidence            000000001111111000     001156779999999999999  88999999999998765

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=1.1e-34  Score=313.85  Aligned_cols=218  Identities=23%  Similarity=0.335  Sum_probs=177.1

Q ss_pred             hcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCC----------HHHHHHHHHHHHhc-CCCCccceeccccc
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLS----------EEDFQAKVSFLTAV-RHPHLVAVMGCCSE  401 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~----------~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~  401 (683)
                      .++|... ..+|.|+||.||+|.+  +|..||||++.....          ...+.+|+.++.++ +||||+++++++..
T Consensus        93 ~~~y~~~-~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~  171 (365)
T 2y7j_A           93 YQKYDPK-DVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYES  171 (365)
T ss_dssp             HHHEEEE-EEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEB
T ss_pred             hhhcccc-eEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEee
Confidence            3445443 5678999999999998  589999999873321          34678999999999 79999999999865


Q ss_pred             --ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc
Q 005680          402 --LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV  479 (683)
Q Consensus       402 --~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~  479 (683)
                        ..||||||++||+|.+++.          ....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++.
T Consensus       172 ~~~~~lv~e~~~g~~L~~~l~----------~~~~l~~~~~~~i~~qi~~~L~~LH~---~gi~H~Dlkp~NIl~~~~~~  238 (365)
T 2y7j_A          172 SSFMFLVFDLMRKGELFDYLT----------EKVALSEKETRSIMRSLLEAVSFLHA---NNIVHRDLKPENILLDDNMQ  238 (365)
T ss_dssp             SSEEEEEECCCTTCBHHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCC
T ss_pred             CCEEEEEEEeCCCCcHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCC
Confidence              7899999999999999994          34579999999999999999999999   67999999999999999999


Q ss_pred             EEEecCCCccc------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHH
Q 005680          480 AKISGLGLNIC------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTT  529 (683)
Q Consensus       480 ~KL~DFGla~~------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~  529 (683)
                      +||+|||++..                              ..++.++|||||||++|+|+||.+||.....     ...
T Consensus       239 ikl~DfG~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~-----~~~  313 (365)
T 2y7j_A          239 IRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQ-----ILM  313 (365)
T ss_dssp             EEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH-----HHH
T ss_pred             EEEEecCcccccCCCcccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCH-----HHH
Confidence            99999998742                              1367799999999999999999999964222     111


Q ss_pred             HHHHhcCCCCCCC----hhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          530 LMQVLDGNAGIWP----LDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       530 ~~~ild~~~~~~p----~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +..+.... ..++    ..++..+.+|+.+||+.|  |..|||+.++++
T Consensus       314 ~~~i~~~~-~~~~~~~~~~~~~~~~~li~~~L~~d--P~~Rps~~ell~  359 (365)
T 2y7j_A          314 LRMIMEGQ-YQFSSPEWDDRSSTVKDLISRLLQVD--PEARLTAEQALQ  359 (365)
T ss_dssp             HHHHHHTC-CCCCHHHHSSSCHHHHHHHHHHSCSS--TTTSCCHHHHHH
T ss_pred             HHHHHhCC-CCCCCcccccCCHHHHHHHHHHcCCC--hhHCcCHHHHhc
Confidence            22222221 1111    245678999999999999  889999999875

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=2.5e-35  Score=305.56  Aligned_cols=222  Identities=18%  Similarity=0.206  Sum_probs=170.9

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCCH----HHHHHHHHHHHhcCCCCccceeccccc--ceeEEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSE----EDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVF  407 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~----~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~  407 (683)
                      ++|.. .+.+|.|+||.||+|..  +|+.||||++......    ..+..+...++.++||||+++++++.+  ..++||
T Consensus         7 ~~y~~-~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~   85 (290)
T 3fme_A            7 DDLEP-IMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM   85 (290)
T ss_dssp             GGEEE-EEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred             Hhhhh-HHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence            44543 35678999999999998  7899999999743322    224445555788899999999999965  789999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCC-cEEeccCCCCcccccCCCcEEEecCC
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPR-PIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~-~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      ||++ |+|.+++....      .....+++..+..|+.||+.||.|||+   . +|+||||||+|||++.++.+||+|||
T Consensus        86 e~~~-~~l~~~l~~~~------~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg  155 (290)
T 3fme_A           86 ELMD-TSLDKFYKQVI------DKGQTIPEDILGKIAVSIVKALEHLHS---KLSVIHRDVKPSNVLINALGQVKMCDFG  155 (290)
T ss_dssp             ECCS-EEHHHHHHHHH------HTTCCCCHHHHHHHHHHHHHHHHHHHH---HSCCCCCCCSGGGCEECTTCCEEBCCC-
T ss_pred             ehhc-cchHHHHHHHH------hcCCCCCHHHHHHHHHHHHHHHHHHhh---cCCeecCCCCHHHEEECCCCCEEEeecC
Confidence            9997 58888875432      245679999999999999999999999   5 69999999999999999999999999


Q ss_pred             Cccc----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCC
Q 005680          487 LNIC----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNA  538 (683)
Q Consensus       487 la~~----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~  538 (683)
                      ++..                            ..++.++|||||||++|+|+||+.||.....    ....+........
T Consensus       156 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~----~~~~~~~~~~~~~  231 (290)
T 3fme_A          156 ISGYLVDDVAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGT----PFQQLKQVVEEPS  231 (290)
T ss_dssp             --------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSC----HHHHHHHHHHSCC
T ss_pred             CcccccccccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCc----hHHHHHHHhccCC
Confidence            8742                            1357789999999999999999999964211    1222233333332


Q ss_pred             CCC-ChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          539 GIW-PLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       539 ~~~-p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ... +..+++.+.+|+.+||+.|  |..|||+.++++
T Consensus       232 ~~~~~~~~~~~~~~li~~~l~~~--p~~Rpt~~e~l~  266 (290)
T 3fme_A          232 PQLPADKFSAEFVDFTSQCLKKN--SKERPTYPELMQ  266 (290)
T ss_dssp             CCCCTTTSCHHHHHHHHHHTCSS--GGGSCCHHHHTT
T ss_pred             CCcccccCCHHHHHHHHHHhhcC--hhhCcCHHHHHh
Confidence            222 3467889999999999999  889999999987

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=2.5e-35  Score=320.58  Aligned_cols=220  Identities=20%  Similarity=0.289  Sum_probs=165.3

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcC-CCCccceeccccc----cee
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVR-HPHLVAVMGCCSE----LKC  404 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~-HpnIV~l~g~~~~----~~~  404 (683)
                      ++|.. .+.+|.|+||.||+|.+  +|+.||||++...    .....+.+|+.++..+. |||||++++++..    ..|
T Consensus         9 ~~y~~-~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~   87 (388)
T 3oz6_A            9 RKYEL-VKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVY   87 (388)
T ss_dssp             TTEEE-EEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEE
T ss_pred             CceEE-EEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEE
Confidence            44433 46778999999999998  6899999998632    22356789999999997 9999999999843    579


Q ss_pred             EEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEec
Q 005680          405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISG  484 (683)
Q Consensus       405 LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~D  484 (683)
                      ||||||+ |+|.+++.           ...+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|
T Consensus        88 lv~e~~~-~~L~~~~~-----------~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivHrDlkp~NIll~~~~~~kl~D  152 (388)
T 3oz6_A           88 LVFDYME-TDLHAVIR-----------ANILEPVHKQYVVYQLIKVIKYLHS---GGLLHRDMKPSNILLNAECHVKVAD  152 (388)
T ss_dssp             EEEECCS-EEHHHHHH-----------HTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECC
T ss_pred             EEecccC-cCHHHHHH-----------cCCCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCCCHHHeEEcCCCCEEecC
Confidence            9999998 68998883           2468999999999999999999999   6799999999999999999999999


Q ss_pred             CCCccc-----------------------------------------------cCCCcccccccHHHHHHHHhhCCCCch
Q 005680          485 LGLNIC-----------------------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAG  517 (683)
Q Consensus       485 FGla~~-----------------------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~  517 (683)
                      ||+|+.                                               ..++.++|||||||++|+|++|++||.
T Consensus       153 FG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~  232 (388)
T 3oz6_A          153 FGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFP  232 (388)
T ss_dssp             CTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             CcccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCC
Confidence            998841                                               246889999999999999999999996


Q ss_pred             hhHHHhhhhHHHHHHHhcCC---------------------------CC----------------CCChhhHHHHHHHHH
Q 005680          518 LVEKAMALDQTTLMQVLDGN---------------------------AG----------------IWPLDLAEELAGIAL  554 (683)
Q Consensus       518 ~~~~~~~~~~~~~~~ild~~---------------------------~~----------------~~p~~~~~~l~~Li~  554 (683)
                      .........  .+...+...                           ..                ..+..+++.+.+|+.
T Consensus       233 ~~~~~~~~~--~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~  310 (388)
T 3oz6_A          233 GSSTMNQLE--RIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLD  310 (388)
T ss_dssp             CSSHHHHHH--HHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHH
T ss_pred             CCCHHHHHH--HHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHH
Confidence            432210000  000000000                           00                001145678999999


Q ss_pred             HhhhcCCCccccccHHHHHHH
Q 005680          555 KCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       555 ~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      +||..|  |.+|||+.++++.
T Consensus       311 ~~L~~d--P~~R~t~~e~l~H  329 (388)
T 3oz6_A          311 KLLQFN--PNKRISANDALKH  329 (388)
T ss_dssp             HHCCSS--GGGSCCHHHHTTS
T ss_pred             HhhccC--cccCCCHHHHhCC
Confidence            999999  8899999888753

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=2.5e-35  Score=312.94  Aligned_cols=216  Identities=19%  Similarity=0.322  Sum_probs=171.0

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      .+.+|.|+||.||+|..  +|..||||++.....   ...+.+|+.++++++|||||++++++.+  ..+|||||++ |+
T Consensus         7 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~   85 (324)
T 3mtl_A            7 LDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLD-KD   85 (324)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEECCS-EE
T ss_pred             EEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecccc-cC
Confidence            35678999999999998  589999999873222   1245679999999999999999999965  7899999998 69


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++..         ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..    
T Consensus        86 l~~~~~~---------~~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~  153 (324)
T 3mtl_A           86 LKQYLDD---------CGNIINMHNVKLFLFQLLRGLAYCHR---QKVLHRDLKPQNLLINERGELKLADFGLARAKSIP  153 (324)
T ss_dssp             HHHHHHH---------TTTCCCHHHHHHHHHHHHHHHHHHHH---TTEEESSCCGGGEEECTTCCEEECSSSEEECC---
T ss_pred             HHHHHHh---------cCCCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCcCHHHEEECCCCCEEEccCcccccccCC
Confidence            9998852         34569999999999999999999999   6799999999999999999999999998742    


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhc-CCCCCC------
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLD-GNAGIW------  541 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild-~~~~~~------  541 (683)
                                            ..++.++|||||||++|+|++|++||.......  ....+...+. +....|      
T Consensus       154 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~  231 (324)
T 3mtl_A          154 TKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEE--QLHFIFRILGTPTEETWPGILSN  231 (324)
T ss_dssp             ---------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH--HHHHHHHHHCCCCTTTSTTGGGC
T ss_pred             ccccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH--HHHHHHHHhCCCChHhchhhhcc
Confidence                                  246889999999999999999999996532210  0011111111 111111      


Q ss_pred             -------------------ChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          542 -------------------PLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       542 -------------------p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                                         ++.+++.+.+|+.+||+.|  |.+|||+.++++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~R~t~~e~l~  281 (324)
T 3mtl_A          232 EEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFE--GRNRISAEDAMK  281 (324)
T ss_dssp             HHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSS--GGGSCCHHHHTT
T ss_pred             hhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcC--cccCCCHHHHhc
Confidence                               1245678999999999999  889999999875

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.5e-35  Score=316.26  Aligned_cols=226  Identities=17%  Similarity=0.191  Sum_probs=177.8

Q ss_pred             ccccccccCCceEEEEEEEC----------CeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccce--------------
Q 005680          340 ERFRLKCAGDWTNVYRGRLN----------HASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAV--------------  395 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~~----------g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l--------------  395 (683)
                      ...+.+|.|+||.||+|.+.          +..||||++...   ..+.+|+.++.+++|||||++              
T Consensus        45 ~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~---~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~~  121 (352)
T 2jii_A           45 KLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD---GRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPT  121 (352)
T ss_dssp             EEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT---STHHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCCC
T ss_pred             EEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc---chHHHHHHHHHHhcccchhhhhhhhccCCccCccc
Confidence            33467789999999999983          689999998743   468899999999999999984              


Q ss_pred             -ecccc---cceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCc
Q 005680          396 -MGCCS---ELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSS  471 (683)
Q Consensus       396 -~g~~~---~~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~N  471 (683)
                       ++++.   ...||||||+ +|+|.+++...        ....+++..++.|+.||+.||.|||+   .+|+||||||+|
T Consensus       122 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~--------~~~~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dikp~N  189 (352)
T 2jii_A          122 CMGFGVHQDKYRFLVLPSL-GRSLQSALDVS--------PKHVLSERSVLQVACRLLDALEFLHE---NEYVHGNVTAEN  189 (352)
T ss_dssp             CCEEEEETTTEEEEEEECC-CEEHHHHHHHS--------GGGCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCCGGG
T ss_pred             hhhccccCCcEEEEEecCC-CcCHHHHHHhC--------CcCCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCCHHH
Confidence             44442   2679999999 99999999532        23679999999999999999999999   679999999999


Q ss_pred             ccccCCC--cEEEecCCCccc--------------------------------cCCCcccccccHHHHHHHHhhCCCCch
Q 005680          472 ILLDRNL--VAKISGLGLNIC--------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAG  517 (683)
Q Consensus       472 ILld~~~--~~KL~DFGla~~--------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~  517 (683)
                      ||++.++  .+||+|||+++.                                ..++.++|||||||++|+|+||+.||.
T Consensus       190 Il~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~  269 (352)
T 2jii_A          190 IFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWT  269 (352)
T ss_dssp             EEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTG
T ss_pred             EEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcc
Confidence            9999998  999999999832                                246789999999999999999999997


Q ss_pred             hhHHHhhhhHHHHHHHhcCCCCCCC------hhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          518 LVEKAMALDQTTLMQVLDGNAGIWP------LDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       518 ~~~~~~~~~~~~~~~ild~~~~~~p------~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      ...............+... ...++      ..++..+.+|+.+||+.|  |..|||+.+|++.|+.+....
T Consensus       270 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~li~~~l~~d--p~~Rps~~~l~~~L~~~~~~~  338 (352)
T 2jii_A          270 NCLPNTEDIMKQKQKFVDK-PGPFVGPCGHWIRPSETLQKYLKVVMALT--YEEKPPYAMLRNNLEALLQDL  338 (352)
T ss_dssp             GGTTCHHHHHHHHHHHHHS-CCCEECTTSCEECCCHHHHHHHHHHHTCC--TTCCCCHHHHHHHHHHHHHHT
T ss_pred             cCCcCHHHHHHHHHhccCC-hhhhhhhccccCCCcHHHHHHHHHHHhCC--hhhCCCHHHHHHHHHHHHHhc
Confidence            5421100001111111111 11111      245789999999999999  889999999999999998654

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=7.6e-35  Score=305.86  Aligned_cols=223  Identities=21%  Similarity=0.311  Sum_probs=173.0

Q ss_pred             hcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC-------CCHHHHHHHHHHHHhcC---CCCccceeccccc-
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-------LSEEDFQAKVSFLTAVR---HPHLVAVMGCCSE-  401 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-------~~~~~~~~Ev~iL~~l~---HpnIV~l~g~~~~-  401 (683)
                      +++|.. .+.+|.|+||.||+|.+  +|+.||||++...       .....+.+|+.++..++   |||||+++++|.+ 
T Consensus         8 ~~~y~~-~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~   86 (308)
T 3g33_A            8 TSRYEP-VAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS   86 (308)
T ss_dssp             --CCEE-EEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred             ccceEE-EEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence            455544 35678999999999996  6899999998621       12356788888888775   9999999999854 


Q ss_pred             ------ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccccc
Q 005680          402 ------LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD  475 (683)
Q Consensus       402 ------~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld  475 (683)
                            ..++||||+. |+|.+++...        ....+++..+..|+.||+.||.|||+   .+|+||||||+|||++
T Consensus        87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~--------~~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~Nil~~  154 (308)
T 3g33_A           87 RTDREIKVTLVFEHVD-QDLRTYLDKA--------PPPGLPAETIKDLMRQFLRGLDFLHA---NCIVHRDLKPENILVT  154 (308)
T ss_dssp             CSSSEEEEEEEEECCC-CBHHHHHHTC--------CTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCTTTEEEC
T ss_pred             CCCCceeEEEEehhhh-cCHHHHHhhc--------cCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEc
Confidence                  3689999997 6999999533        23449999999999999999999999   6799999999999999


Q ss_pred             CCCcEEEecCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHH
Q 005680          476 RNLVAKISGLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLM  531 (683)
Q Consensus       476 ~~~~~KL~DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~  531 (683)
                      .++.+||+|||++..                        ..++.++|||||||++|+|++|++||.........  ..+.
T Consensus       155 ~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~--~~i~  232 (308)
T 3g33_A          155 SGGTVKLADFGLARIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQL--GKIF  232 (308)
T ss_dssp             TTSCEEECSCSCTTTSTTCCCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHH--HHHH
T ss_pred             CCCCEEEeeCccccccCCCcccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHH--HHHH
Confidence            999999999999853                        34788999999999999999999999653221101  1111


Q ss_pred             HHhc-CCCCCC----------------------ChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          532 QVLD-GNAGIW----------------------PLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       532 ~ild-~~~~~~----------------------p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ..+. +....|                      .+.+++.+.+|+.+||+.|  |.+|||+.++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~R~t~~e~l~  296 (308)
T 3g33_A          233 DLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFN--PHKRISAFRALQ  296 (308)
T ss_dssp             HHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSS--TTTSCCHHHHHT
T ss_pred             HHhCCCChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCC--CccCCCHHHHhc
Confidence            1111 111111                      1246788999999999999  889999999875

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=8.3e-35  Score=307.78  Aligned_cols=214  Identities=20%  Similarity=0.252  Sum_probs=172.0

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCCC----------CHHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEe
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----------SEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFE  408 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----------~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~E  408 (683)
                      .+.+|+|+||.||+|..  +|..||||++....          ....+.+|+.++.+++||||+++++++.. ..|+|||
T Consensus        15 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~lv~e   94 (322)
T 2ycf_A           15 SKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAEDYYIVLE   94 (322)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEE
T ss_pred             eeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCceEEEEe
Confidence            46778999999999998  57999999986321          12358899999999999999999999865 7899999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc---EEEecC
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV---AKISGL  485 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~---~KL~DF  485 (683)
                      |+++|+|.+++          .....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.   +||+||
T Consensus        95 ~~~~~~L~~~~----------~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~NIl~~~~~~~~~~kl~Df  161 (322)
T 2ycf_A           95 LMEGGELFDKV----------VGNKRLKEATCKLYFYQMLLAVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDF  161 (322)
T ss_dssp             CCTTEETHHHH----------STTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESSSSSSCCEEECCC
T ss_pred             cCCCCcHHHHH----------hccCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEEecCCCCCeEEEccC
Confidence            99999999999          345679999999999999999999999   67999999999999987654   999999


Q ss_pred             CCccc---------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCC
Q 005680          486 GLNIC---------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNA  538 (683)
Q Consensus       486 Gla~~---------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~  538 (683)
                      |++..                           ..++.++|||||||++|+|++|.+||......    ......+.....
T Consensus       162 g~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~----~~~~~~~~~~~~  237 (322)
T 2ycf_A          162 GHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQ----VSLKDQITSGKY  237 (322)
T ss_dssp             TTCEECCCCHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCS----SCHHHHHHHTCC
T ss_pred             ccceecccccccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchH----HHHHHHHHhCcc
Confidence            99853                           23678999999999999999999999643211    011111122211


Q ss_pred             CCC---ChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          539 GIW---PLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       539 ~~~---p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ...   +..++..+.+|+.+||..|  |..|||+.++++
T Consensus       238 ~~~~~~~~~~~~~~~~li~~~l~~d--P~~Rps~~~~l~  274 (322)
T 2ycf_A          238 NFIPEVWAEVSEKALDLVKKLLVVD--PKARFTTEEALR  274 (322)
T ss_dssp             CCCHHHHTTSCHHHHHHHHHHSCSS--TTTSCCHHHHHT
T ss_pred             ccCchhhhhcCHHHHHHHHHHcccC--HhhCCCHHHHhh
Confidence            111   1246789999999999999  889999999985

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=2.9e-35  Score=313.06  Aligned_cols=223  Identities=17%  Similarity=0.244  Sum_probs=171.2

Q ss_pred             hhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc--ceeE
Q 005680          334 ATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCI  405 (683)
Q Consensus       334 at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~L  405 (683)
                      ..++|.. .+.+|.|+||.||+|..  +|..||||++....    ....+.+|+.++++++|||||++++++.+  ..+|
T Consensus        32 ~~~~y~~-~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  110 (329)
T 3gbz_A           32 SIDRYRR-ITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHL  110 (329)
T ss_dssp             CGGGEEE-EEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEE
T ss_pred             chhhEEE-EEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEE
Confidence            3455544 45678999999999987  68999999997322    23467899999999999999999999966  7899


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccc-----cCCCcE
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL-----DRNLVA  480 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILl-----d~~~~~  480 (683)
                      ||||++ |+|.+++.          ....+++..+..|+.||+.||.|||+   .+|+||||||+|||+     +.++.+
T Consensus       111 v~e~~~-~~L~~~~~----------~~~~~~~~~~~~i~~ql~~~l~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~~  176 (329)
T 3gbz_A          111 IFEYAE-NDLKKYMD----------KNPDVSMRVIKSFLYQLINGVNFCHS---RRCLHRDLKPQNLLLSVSDASETPVL  176 (329)
T ss_dssp             EEECCS-EEHHHHHH----------HCTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEC-----CCEE
T ss_pred             EEecCC-CCHHHHHh----------hcCCCCHHHHHHHHHHHHHHHHHHHh---CCEECCCCCHHHEEEecCCCCccceE
Confidence            999998 59999993          44569999999999999999999999   679999999999999     455669


Q ss_pred             EEecCCCccc--------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHh
Q 005680          481 KISGLGLNIC--------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVL  534 (683)
Q Consensus       481 KL~DFGla~~--------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~il  534 (683)
                      ||+|||++..                          ..++.++|||||||++|+|++|.+||......... .......-
T Consensus       177 kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~-~~~~~~~~  255 (329)
T 3gbz_A          177 KIGDFGLARAFGIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQL-FKIFEVLG  255 (329)
T ss_dssp             EECCTTHHHHHC-----------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH-HHHHHHHC
T ss_pred             EECcCCCccccCCcccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHH-HHHHHHhC
Confidence            9999998742                          23788999999999999999999999653221100 00111100


Q ss_pred             cCCCCCC-------------------------ChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          535 DGNAGIW-------------------------PLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       535 d~~~~~~-------------------------p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .+....+                         +..++..+.+|+.+||+.|  |.+|||+.++++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~R~t~~e~l~  318 (329)
T 3gbz_A          256 LPDDTTWPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMD--PVKRISAKNALE  318 (329)
T ss_dssp             CCCTTTSTTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSS--GGGSCCHHHHHT
T ss_pred             CCchhhhhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCC--hhhCCCHHHHhC
Confidence            0111111                         0125688999999999999  889999999875

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=9.6e-35  Score=311.01  Aligned_cols=221  Identities=15%  Similarity=0.249  Sum_probs=172.4

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc--------
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--------  401 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--------  401 (683)
                      ++|.. .+.+|+|+||.||+|..  +|..||||++...    .....+.+|+.++..++|||||++++++.+        
T Consensus        17 ~~y~~-~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   95 (351)
T 3mi9_A           17 SKYEK-LAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   95 (351)
T ss_dssp             GGEEE-EEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred             cceeE-EEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence            34433 35678999999999998  6899999998622    224578899999999999999999998854        


Q ss_pred             --ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc
Q 005680          402 --LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV  479 (683)
Q Consensus       402 --~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~  479 (683)
                        ..+|||||++ |+|.+.+.         .....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++.
T Consensus        96 ~~~~~lv~e~~~-~~l~~~l~---------~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIl~~~~~~  162 (351)
T 3mi9_A           96 KGSIYLVFDFCE-HDLAGLLS---------NVLVKFTLSEIKRVMQMLLNGLYYIHR---NKILHRDMKAANVLITRDGV  162 (351)
T ss_dssp             -CEEEEEEECCS-EEHHHHHH---------CTTSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSC
T ss_pred             CceEEEEEeccC-CCHHHHHh---------hccCCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCHHHEEEcCCCC
Confidence              4689999998 47777774         234569999999999999999999999   67999999999999999999


Q ss_pred             EEEecCCCccc------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHH
Q 005680          480 AKISGLGLNIC------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTT  529 (683)
Q Consensus       480 ~KL~DFGla~~------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~  529 (683)
                      +||+|||++..                              ..++.++|||||||++|+|+||.+||.......  ....
T Consensus       163 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~--~~~~  240 (351)
T 3mi9_A          163 LKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQH--QLAL  240 (351)
T ss_dssp             EEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH--HHHH
T ss_pred             EEEccchhcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHH--HHHH
Confidence            99999998742                              236889999999999999999999997532210  0111


Q ss_pred             HHHHhcCCC-CCCCh---------------------------hhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          530 LMQVLDGNA-GIWPL---------------------------DLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       530 ~~~ild~~~-~~~p~---------------------------~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +........ ..++.                           ..++.+.+|+.+||+.|  |..|||+.++++
T Consensus       241 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~R~t~~e~l~  311 (351)
T 3mi9_A          241 ISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLD--PAQRIDSDDALN  311 (351)
T ss_dssp             HHHHHCCCCTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSS--GGGSCCHHHHHT
T ss_pred             HHHHhCCCChhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCC--hhhCCCHHHHhC
Confidence            111111111 11111                           01567899999999999  889999988875

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=4.1e-35  Score=320.25  Aligned_cols=215  Identities=17%  Similarity=0.276  Sum_probs=176.3

Q ss_pred             ccccccccCCceEEEEEEE-CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcC--CCCccceeccccc--ceeEEEeec
Q 005680          340 ERFRLKCAGDWTNVYRGRL-NHASVAIKTLNNGL----SEEDFQAKVSFLTAVR--HPHLVAVMGCCSE--LKCIVFEYM  410 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~-~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~--HpnIV~l~g~~~~--~~~LV~Ey~  410 (683)
                      ...+.+|.|+||.||+|.. ++..||||++....    ....+.+|+.+|.+++  |||||++++++..  ..||||| +
T Consensus        59 ~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~E-~  137 (390)
T 2zmd_A           59 SILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-C  137 (390)
T ss_dssp             EEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEE-C
T ss_pred             EEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEEe-c
Confidence            4456788999999999998 58899999986322    2367899999999996  5999999998855  7899999 5


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~  490 (683)
                      .+|+|.+++.          ....+++..+..|+.||+.||.|||+   .+|+||||||+|||++ ++.+||+|||+++.
T Consensus       138 ~~~~L~~~l~----------~~~~~~~~~~~~i~~qi~~aL~~lH~---~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~  203 (390)
T 2zmd_A          138 GNIDLNSWLK----------KKKSIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIV-DGMLKLIDFGIANQ  203 (390)
T ss_dssp             CSEEHHHHHH----------HCSSCCHHHHHHHHHHHHHHHHHHHT---TTCCCCCCCGGGEEES-SSCEEECCCSSSCC
T ss_pred             CCCCHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHEEEE-CCeEEEEecCcccc
Confidence            6799999994          44578999999999999999999999   6799999999999995 58999999999852


Q ss_pred             --------------------------c------------CCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHH
Q 005680          491 --------------------------D------------QLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQ  532 (683)
Q Consensus       491 --------------------------~------------~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~  532 (683)
                                                .            .++.++||||||||+|+|++|++||.....    ....+..
T Consensus       204 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~----~~~~~~~  279 (390)
T 2zmd_A          204 MQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN----QISKLHA  279 (390)
T ss_dssp             C---------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCC----HHHHHHH
T ss_pred             ccCCCccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhH----HHHHHHH
Confidence                                      1            367789999999999999999999964211    1123344


Q ss_pred             HhcC-CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          533 VLDG-NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       533 ild~-~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ++++ ....+|...+..+.+|+.+||..|  |..|||+.++++.
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~Rps~~ell~h  321 (390)
T 2zmd_A          280 IIDPNHEIEFPDIPEKDLQDVLKCCLKRD--PKQRISIPELLAH  321 (390)
T ss_dssp             HHCTTSCCCCCCCSCHHHHHHHHHHTCSS--TTTSCCHHHHHTS
T ss_pred             HhCccccCCCCccchHHHHHHHHHHcccC--hhhCCCHHHHhhC
Confidence            5544 334556666789999999999999  8899999999875

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=1.4e-34  Score=301.41  Aligned_cols=218  Identities=20%  Similarity=0.254  Sum_probs=177.3

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC-----------CHHHHHHHHHHHHhcC-CCCccceeccccc
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-----------SEEDFQAKVSFLTAVR-HPHLVAVMGCCSE  401 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-----------~~~~~~~Ev~iL~~l~-HpnIV~l~g~~~~  401 (683)
                      ++|.. .+.+|.|+||.||+|..  +|+.||||++....           ....+.+|+.++.++. ||||+++++++.+
T Consensus        17 ~~y~~-~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   95 (298)
T 1phk_A           17 ENYEP-KEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET   95 (298)
T ss_dssp             TTEEE-EEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             hccce-eeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence            44443 35678999999999998  68999999986321           1246789999999995 9999999999966


Q ss_pred             --ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc
Q 005680          402 --LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV  479 (683)
Q Consensus       402 --~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~  479 (683)
                        ..++||||+++|+|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.
T Consensus        96 ~~~~~lv~e~~~~~~L~~~l~----------~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~  162 (298)
T 1phk_A           96 NTFFFLVFDLMKKGELFDYLT----------EKVTLSEKETRKIMRALLEVICALHK---LNIVHRDLKPENILLDDDMN  162 (298)
T ss_dssp             SSEEEEEEECCTTCBHHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCC
T ss_pred             CCeEEEEEeccCCCcHHHHHh----------ccCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcceEEEcCCCc
Confidence              6899999999999999994          34579999999999999999999999   67999999999999999999


Q ss_pred             EEEecCCCccc------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHH
Q 005680          480 AKISGLGLNIC------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTT  529 (683)
Q Consensus       480 ~KL~DFGla~~------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~  529 (683)
                      +||+|||++..                              ..++.++||||||+++|+|++|.+||.....     ...
T Consensus       163 ~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~-----~~~  237 (298)
T 1phk_A          163 IKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQ-----MLM  237 (298)
T ss_dssp             EEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHH
T ss_pred             EEEecccchhhcCCCcccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccH-----HHH
Confidence            99999998742                              1356799999999999999999999864322     111


Q ss_pred             HHHHhcCCC---CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          530 LMQVLDGNA---GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       530 ~~~ild~~~---~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ...+.....   ......++..+.+|+.+||+.|  |..|||+.++++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d--p~~Rps~~~ll~  283 (298)
T 1phk_A          238 LRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQ--PQKRYTAEEALA  283 (298)
T ss_dssp             HHHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSS--GGGSCCHHHHTT
T ss_pred             HHHHhcCCcccCcccccccCHHHHHHHHHHccCC--cccCCCHHHHHh
Confidence            222222211   1112467889999999999999  889999998875

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=2.4e-35  Score=313.38  Aligned_cols=219  Identities=22%  Similarity=0.301  Sum_probs=173.6

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCCCC----HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLS----EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~----~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      .+++|.|+||.||+|..  +|..||||++.....    ...+.+|+.++.+++||||++++++|.+  ..++||||++++
T Consensus        30 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~  109 (331)
T 4aaa_A           30 LGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHT  109 (331)
T ss_dssp             EEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSEE
T ss_pred             eeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEEecCCcc
Confidence            45778999999999998  489999999863322    2457899999999999999999999966  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++          .....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++..   
T Consensus       110 ~l~~~~----------~~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  176 (331)
T 4aaa_A          110 ILDDLE----------LFPNGLDYQVVQKYLFQIINGIGFCHS---HNIIHRDIKPENILVSQSGVVKLCDFGFARTLAA  176 (331)
T ss_dssp             HHHHHH----------HSTTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCTTC-----
T ss_pred             hHHHHH----------hhccCCCHHHHHHHHHHHHHHHHHHHH---CCEEccCcChheEEEcCCCcEEEEeCCCceeecC
Confidence            999887          345579999999999999999999999   6799999999999999999999999998842   


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHH---------HHHH------
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQT---------TLMQ------  532 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~---------~~~~------  532 (683)
                                             ..++.++|||||||++|+|++|++||............         ....      
T Consensus       177 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (331)
T 4aaa_A          177 PGEVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNP  256 (331)
T ss_dssp             -------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHCG
T ss_pred             CccccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhcc
Confidence                                   14678999999999999999999999643221000000         0000      


Q ss_pred             HhcCC-CC----C-----CChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          533 VLDGN-AG----I-----WPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       533 ild~~-~~----~-----~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ..... .+    .     ..+.+++.+.+|+.+||+.|  |..|||+.++++.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d--P~~Rpt~~ell~h  307 (331)
T 4aaa_A          257 VFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHID--PDKRPFCAELLHH  307 (331)
T ss_dssp             GGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSS--GGGSCCGGGGGGS
T ss_pred             ccccccCccccccchhhhcccchhHHHHHHHHHHhccC--cccCCCHHHHhcC
Confidence            00000 00    0     01246788999999999999  8899999999864

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=9.7e-35  Score=339.04  Aligned_cols=212  Identities=20%  Similarity=0.306  Sum_probs=180.1

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCI  405 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~L  405 (683)
                      ++|.. .+++|+|+||.||+|..  +++.||||++..     ......+..|..+|..+ +||||+.+++++.+  ..||
T Consensus       341 ~~f~~-~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~l  419 (674)
T 3pfq_A          341 TDFNF-LMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF  419 (674)
T ss_dssp             TTEEE-EEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEEE
T ss_pred             cceEE-EEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEEE
Confidence            45543 46788999999999998  578899999872     33456788999999988 79999999999976  7899


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecC
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGL  485 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DF  485 (683)
                      ||||++||+|.++|.          ....+++..++.|+.||+.||.|||+   .+||||||||+||||+.+|.+||+||
T Consensus       420 V~E~~~gg~L~~~l~----------~~~~~~~~~~~~~~~qi~~aL~~LH~---~gIiHrDLKp~NILl~~~g~ikL~DF  486 (674)
T 3pfq_A          420 VMEYVNGGDLMYHIQ----------QVGRFKEPHAVFYAAEIAIGLFFLQS---KGIIYRDLKLDNVMLDSEGHIKIADF  486 (674)
T ss_dssp             EEECCCSCBHHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHH---TSEECCCCCSTTEEECSSSCEEECCC
T ss_pred             EEeCcCCCcHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHh---CCeEeccCChhhEEEcCCCcEEEeec
Confidence            999999999999994          44579999999999999999999999   77999999999999999999999999


Q ss_pred             CCccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCC
Q 005680          486 GLNIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGI  540 (683)
Q Consensus       486 Gla~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~  540 (683)
                      |+|+.                         ..|+.++|||||||+||||++|++||.....     ...+..++. ....
T Consensus       487 Gla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~-----~~~~~~i~~-~~~~  560 (674)
T 3pfq_A          487 GMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE-----DELFQSIME-HNVA  560 (674)
T ss_dssp             TTCEECCCTTCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHS-SCCC
T ss_pred             ceeeccccCCcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCH-----HHHHHHHHh-CCCC
Confidence            99853                         3578899999999999999999999975322     223333443 3456


Q ss_pred             CChhhHHHHHHHHHHhhhcCCCccccccH
Q 005680          541 WPLDLAEELAGIALKCLSADQDANRDLRI  569 (683)
Q Consensus       541 ~p~~~~~~l~~Li~~CL~~dP~p~~RPs~  569 (683)
                      +|..+++++.+||.+||+.|  |.+||++
T Consensus       561 ~p~~~s~~~~~li~~lL~~d--P~~R~~~  587 (674)
T 3pfq_A          561 YPKSMSKEAVAICKGLMTKH--PGKRLGC  587 (674)
T ss_dssp             CCTTSCHHHHHHHHHHSCSS--STTCTTC
T ss_pred             CCccCCHHHHHHHHHHccCC--HHHCCCC
Confidence            77789999999999999999  8899997

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=5.4e-35  Score=311.67  Aligned_cols=227  Identities=18%  Similarity=0.200  Sum_probs=178.3

Q ss_pred             cCccccccccccCCceEEEEEEECCeeEEEEEcCCC----CC---------------HHHHHHHHHHHHhcCCCCcccee
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNG----LS---------------EEDFQAKVSFLTAVRHPHLVAVM  396 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~~g~~VAvK~l~~~----~~---------------~~~~~~Ev~iL~~l~HpnIV~l~  396 (683)
                      ++|.. .+.+|.|+||.||+|..+|..||||++...    ..               ...+.+|+.++.+++||||++++
T Consensus        31 ~~y~~-~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~  109 (348)
T 2pml_X           31 NDYRI-IRTLNQGKFNKIILCEKDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCE  109 (348)
T ss_dssp             TTEEE-EEEEECCSSCCEEEEEETTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCS
T ss_pred             CceEE-EEEEcCCCCeEEEEEEcCCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEE
Confidence            44543 356789999999999999999999998721    11               17899999999999999999999


Q ss_pred             ccccc--ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccc
Q 005680          397 GCCSE--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL  474 (683)
Q Consensus       397 g~~~~--~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILl  474 (683)
                      +++.+  ..++||||+++|+|.+++.....-  .......+++..+..++.||+.||.|||+.  .+|+||||||+|||+
T Consensus       110 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l--~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~--~~i~H~dl~p~Nil~  185 (348)
T 2pml_X          110 GIITNYDEVYIIYEYMENDSILKFDEYFFVL--DKNYTCFIPIQVIKCIIKSVLNSFSYIHNE--KNICHRDVKPSNILM  185 (348)
T ss_dssp             EEEESSSEEEEEEECCTTCBSSEESSSEESS--CSSSCCCCCHHHHHHHHHHHHHHHHHHHHT--SCEECCCCCGGGEEE
T ss_pred             EEEeeCCeEEEEEeccCCCcHHHHHHHhhhh--hhccccCCCHHHHHHHHHHHHHHHHHHhcc--CCEeecCCChHhEEE
Confidence            99865  789999999999999993211000  001257799999999999999999999981  359999999999999


Q ss_pred             cCCCcEEEecCCCccc-----------------------c-CCCc-ccccccHHHHHHHHhhCCCCchhhHHHhhhhHHH
Q 005680          475 DRNLVAKISGLGLNIC-----------------------D-QLNV-RSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTT  529 (683)
Q Consensus       475 d~~~~~KL~DFGla~~-----------------------~-~~t~-ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~  529 (683)
                      +.++.+||+|||++..                       . .++. ++|||||||++|+|++|.+||.....    ....
T Consensus       186 ~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~----~~~~  261 (348)
T 2pml_X          186 DKNGRVKLSDFGESEYMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKIS----LVEL  261 (348)
T ss_dssp             CTTSCEEECCCTTCEECBTTEECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSC----SHHH
T ss_pred             cCCCcEEEeccccccccccccccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCc----HHHH
Confidence            9999999999999853                       1 2344 89999999999999999999964221    0122


Q ss_pred             HHHHhcCCCCCCC-------------------hhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          530 LMQVLDGNAGIWP-------------------LDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       530 ~~~ild~~~~~~p-------------------~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ...+... ...+|                   ..++..+.+|+.+||+.|  |..|||+.++++
T Consensus       262 ~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d--P~~Rps~~e~l~  322 (348)
T 2pml_X          262 FNNIRTK-NIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKN--PAERITSEDALK  322 (348)
T ss_dssp             HHHHTSC-CCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSS--GGGSCCHHHHHT
T ss_pred             HHHHhcc-CcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCC--hhhCCCHHHHhc
Confidence            2222222 22233                   467889999999999999  889999999876

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=7.3e-35  Score=315.62  Aligned_cols=221  Identities=17%  Similarity=0.234  Sum_probs=168.8

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC-C---HHHHHHHHHHHHhcCCCCccceeccccc--------
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-S---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--------  401 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--------  401 (683)
                      +.|. ..+.+|+|+||.||+|.+  +|..||||++.... .   ...+.+|+.+|+.++|||||++++++..        
T Consensus        25 ~~y~-~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  103 (367)
T 1cm8_A           25 AVYR-DLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT  103 (367)
T ss_dssp             SSEE-EEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             ceEE-EeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence            3443 346778999999999998  68999999996322 1   3568899999999999999999999854        


Q ss_pred             ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEE
Q 005680          402 LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAK  481 (683)
Q Consensus       402 ~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~K  481 (683)
                      ..|+||||+ +++|.+++.           ...+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+|
T Consensus       104 ~~~lv~e~~-~~~L~~~~~-----------~~~l~~~~~~~~~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~k  168 (367)
T 1cm8_A          104 DFYLVMPFM-GTDLGKLMK-----------HEKLGEDRIQFLVYQMLKGLRYIHA---AGIIHRDLKPGNLAVNEDCELK  168 (367)
T ss_dssp             CCEEEEECC-SEEHHHHHH-----------HCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEE
T ss_pred             eEEEEEecC-CCCHHHHHh-----------cCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCcCHHHEEEcCCCCEE
Confidence            359999999 789999983           2468999999999999999999999   6799999999999999999999


Q ss_pred             EecCCCccc-----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhH-----------
Q 005680          482 ISGLGLNIC-----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQ-----------  527 (683)
Q Consensus       482 L~DFGla~~-----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~-----------  527 (683)
                      |+|||+++.                       ..++.++|||||||++|+|++|++||...........           
T Consensus       169 l~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~~~~~  248 (367)
T 1cm8_A          169 ILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAE  248 (367)
T ss_dssp             ECCCTTCEECCSSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHH
T ss_pred             EEeeecccccccccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHH
Confidence            999999853                       2478899999999999999999999964322100000           


Q ss_pred             -------HHHHHHhc---C-C---CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          528 -------TTLMQVLD---G-N---AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       528 -------~~~~~ild---~-~---~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                             ......+.   . .   ........++.+.+|+.+||..|  |.+|||+.++++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~d--P~~R~t~~e~l~  307 (367)
T 1cm8_A          249 FVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLD--AEQRVTAGEALA  307 (367)
T ss_dssp             HHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSS--TTTSCCHHHHHH
T ss_pred             HHHHhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCC--hhHCCCHHHHhc
Confidence                   00001111   0 0   01122356789999999999999  889999998876

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=2.4e-34  Score=299.01  Aligned_cols=214  Identities=21%  Similarity=0.338  Sum_probs=176.3

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcC----CCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLN----NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~----~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      .+.+|.|+||.||+|..  ++..||||++.    .......+.+|+.++++++||||+++++++.+  ..++||||++++
T Consensus        27 ~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~  106 (287)
T 2wei_A           27 VCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGG  106 (287)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCCSC
T ss_pred             eEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEEEccCCC
Confidence            35678999999999998  68999999986    23346789999999999999999999999866  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC---CcEEEecCCCccc
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN---LVAKISGLGLNIC  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~---~~~KL~DFGla~~  490 (683)
                      +|.+++.          ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.+   +.+||+|||++..
T Consensus       107 ~L~~~l~----------~~~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~  173 (287)
T 2wei_A          107 ELFDEII----------KRKRFSEHDAARIIKQVFSGITYMHK---HNIVHRDLKPENILLESKEKDCDIKIIDFGLSTC  173 (287)
T ss_dssp             BHHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGT
T ss_pred             CHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCChhhEEEecCCCcccEEEeccCccee
Confidence            9999984          34568999999999999999999999   679999999999999764   4799999998753


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCC-CCCC--hh
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNA-GIWP--LD  544 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~-~~~p--~~  544 (683)
                                             +.++.++||||||+++|+|++|.+||.....     ......+..... ...+  ..
T Consensus       174 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  248 (287)
T 2wei_A          174 FQQNTKMKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNE-----YDILKRVETGKYAFDLPQWRT  248 (287)
T ss_dssp             BCCCSSCSCHHHHHTTCCHHHHTTCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHCCCCCCSGGGTT
T ss_pred             ecCCCccccccCcccccChHHhcCCCCCchhhHhHHHHHHHHHhCCCCCCCCCH-----HHHHHHHHcCCCCCCchhhhh
Confidence                                   3467899999999999999999999865322     111222222211 1111  35


Q ss_pred             hHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          545 LAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ++..+.+|+.+||..|  |..|||+.++++.
T Consensus       249 ~~~~~~~li~~~l~~d--p~~Rps~~ell~h  277 (287)
T 2wei_A          249 ISDDAKDLIRKMLTFH--PSLRITATQCLEH  277 (287)
T ss_dssp             SCHHHHHHHHHHTCSS--GGGSCCHHHHHHS
T ss_pred             cCHHHHHHHHHHcccC--hhhCcCHHHHhcC
Confidence            6789999999999999  8899999999873

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=2.2e-34  Score=310.45  Aligned_cols=227  Identities=14%  Similarity=0.129  Sum_probs=180.3

Q ss_pred             hhcCccccccccccCCceEEEEEE-----E--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcC---CCCccceeccccc--
Q 005680          334 ATEDFSERFRLKCAGDWTNVYRGR-----L--NHASVAIKTLNNGLSEEDFQAKVSFLTAVR---HPHLVAVMGCCSE--  401 (683)
Q Consensus       334 at~~F~~~~~liG~G~fG~Vykg~-----~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~---HpnIV~l~g~~~~--  401 (683)
                      ..++|.. .+++|+|+||.||+|.     .  +++.||||++.. .....+..|+.++..++   |+||+.+++++..  
T Consensus        63 ~~~~y~~-~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~-~~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~  140 (365)
T 3e7e_A           63 GSKLVYV-HHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKP-ANPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQN  140 (365)
T ss_dssp             SSSEEEE-EEEEEECSSEEEEEEEC-------CCCCEEEEEESS-CCHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSS
T ss_pred             CCEEEEE-EEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCC-CChhHHHHHHHHHHHhhhhhhhhhhhhheeeecCC
Confidence            3344543 3577899999999994     2  688999999964 35678889999999887   9999999999854  


Q ss_pred             ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC-----
Q 005680          402 LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR-----  476 (683)
Q Consensus       402 ~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~-----  476 (683)
                      ..||||||+++|+|.+++.....     .....+++..++.|+.||+.||.|||+   .+||||||||+||||+.     
T Consensus       141 ~~~lv~e~~~~g~L~~~l~~~~~-----~~~~~l~~~~~~~i~~qi~~~L~~lH~---~~ivHrDiKp~NIll~~~~~~~  212 (365)
T 3e7e_A          141 GSVLVGELYSYGTLLNAINLYKN-----TPEKVMPQGLVISFAMRMLYMIEQVHD---CEIIHGDIKPDNFILGNGFLEQ  212 (365)
T ss_dssp             CEEEEECCCCSCBHHHHHHHHHT-----STTCSCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCSGGGEEECGGGTCC
T ss_pred             CcEEEEeccCCCcHHHHHHHhhc-----ccccCCCHHHHHHHHHHHHHHHHHHhh---CCeecCCCCHHHEEecccccCc
Confidence            78999999999999999964321     135679999999999999999999999   67999999999999998     


Q ss_pred             ------CCcEEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHh
Q 005680          477 ------NLVAKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAM  523 (683)
Q Consensus       477 ------~~~~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~  523 (683)
                            ++.+||+|||+|+.                           ..++.++|||||||++|+|+||++||...... 
T Consensus       213 ~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~-  291 (365)
T 3e7e_A          213 DDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGG-  291 (365)
T ss_dssp             ------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETT-
T ss_pred             cccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCC-
Confidence                  89999999999832                           24789999999999999999999998542110 


Q ss_pred             hhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCcccc-ccHHHHHHHHHHHHHh
Q 005680          524 ALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRD-LRIAGVMKELDEVRKK  582 (683)
Q Consensus       524 ~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~R-Ps~~eVl~~L~~l~~~  582 (683)
                         .    ..+.......  ..++.+.+++..||+.+  |..| |++.++.+.|+.+...
T Consensus       292 ---~----~~~~~~~~~~--~~~~~~~~~~~~~l~~~--p~~r~~~~~~l~~~l~~~l~~  340 (365)
T 3e7e_A          292 ---E----CKPEGLFRRL--PHLDMWNEFFHVMLNIP--DCHHLPSLDLLRQKLKKVFQQ  340 (365)
T ss_dssp             ---E----EEECSCCTTC--SSHHHHHHHHHHHHCCC--CTTCCCCHHHHHHHHHHHHHH
T ss_pred             ---c----eeechhcccc--CcHHHHHHHHHHHcCCC--CCCcchHHHHHHHHHHHHHHH
Confidence               0    0011111111  24778899999999999  4455 7788888888887654

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=8.5e-35  Score=316.12  Aligned_cols=233  Identities=14%  Similarity=0.205  Sum_probs=176.5

Q ss_pred             HhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccccc---------
Q 005680          333 LATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE---------  401 (683)
Q Consensus       333 ~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~---------  401 (683)
                      ...++|.. .+.+|.|+||.||+|..  +|..||||++....  ....+|+.+++.++|||||+++++|..         
T Consensus         4 ~~~~~y~~-~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~--~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~   80 (383)
T 3eb0_A            4 TSSKKYSL-GKTLGTGSFGIVCEVFDIESGKRFALKKVLQDP--RYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPP   80 (383)
T ss_dssp             --CTTEEE-EEEEECC-CEEEEEEEETTTCCEEEEEEEECCT--TSCCHHHHHHTTCCCTTBCCEEEEEEEC--------
T ss_pred             cccceEEE-EEEEEeccCEEEEEEEECCCCCEEEEEEEecCc--chHHHHHHHHHHcCCCCccchhheeeecCccccccc
Confidence            34455544 46678999999999998  68999999986332  233579999999999999999998732         


Q ss_pred             -------------------------------ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhh
Q 005680          402 -------------------------------LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLG  450 (683)
Q Consensus       402 -------------------------------~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~a  450 (683)
                                                     ..+|||||++ |+|.+.+....      .....+++..+..|+.||+.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~------~~~~~l~~~~~~~i~~qi~~a  153 (383)
T 3eb0_A           81 QPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFI------RSGRSIPMNLISIYIYQLFRA  153 (383)
T ss_dssp             -----------------------------CCEEEEEECCCS-EEHHHHHHHHH------HTTCCCCHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHH------hcCCCCCHHHHHHHHHHHHHH
Confidence                                           2789999998 68888875432      245679999999999999999


Q ss_pred             hhhhccCCCCcEEeccCCCCccccc-CCCcEEEecCCCccc-------------------------cCCCcccccccHHH
Q 005680          451 LSFLHSTEPRPIVHGSLTPSSILLD-RNLVAKISGLGLNIC-------------------------DQLNVRSDIRAFGT  504 (683)
Q Consensus       451 L~yLH~~~~~~IiHrDLKP~NILld-~~~~~KL~DFGla~~-------------------------~~~t~ksDVwSlGv  504 (683)
                      |.|||+   .+|+||||||+|||++ .++.+||+|||+++.                         ..++.++|||||||
T Consensus       154 L~~LH~---~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~  230 (383)
T 3eb0_A          154 VGFIHS---LGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGC  230 (383)
T ss_dssp             HHHHHT---TTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSCCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHH
T ss_pred             HHHHHH---CcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCCCcCcccCCCccCHHHhcCCCCCCcchhhhhHHH
Confidence            999999   6799999999999998 689999999999852                         23788999999999


Q ss_pred             HHHHHhhCCCCchhhHHHhhhhH----------HHHHHHhcCC----------C----CCCChhhHHHHHHHHHHhhhcC
Q 005680          505 LLLHLLTGRNWAGLVEKAMALDQ----------TTLMQVLDGN----------A----GIWPLDLAEELAGIALKCLSAD  560 (683)
Q Consensus       505 iL~eLltG~~Pf~~~~~~~~~~~----------~~~~~ild~~----------~----~~~p~~~~~~l~~Li~~CL~~d  560 (683)
                      ++|+|++|++||...........          ..+... .+.          .    ..+|..++..+.+|+.+||..|
T Consensus       231 il~ell~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d  309 (383)
T 3eb0_A          231 VFGELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRM-NPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYE  309 (383)
T ss_dssp             HHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHH-CTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSS
T ss_pred             HHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHh-CcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCC
Confidence            99999999999964322100000          000000 000          0    0124456788999999999999


Q ss_pred             CCccccccHHHHHHH--HHHHHH
Q 005680          561 QDANRDLRIAGVMKE--LDEVRK  581 (683)
Q Consensus       561 P~p~~RPs~~eVl~~--L~~l~~  581 (683)
                        |..|||+.++++.  ++.++.
T Consensus       310 --P~~R~t~~e~l~hp~f~~~~~  330 (383)
T 3eb0_A          310 --PDLRINPYEAMAHPFFDHLRN  330 (383)
T ss_dssp             --GGGSCCHHHHHTSGGGHHHHH
T ss_pred             --hhhCCCHHHHhcCHHHHHHHh
Confidence              8899999999853  455543

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.1e-34  Score=310.74  Aligned_cols=223  Identities=20%  Similarity=0.315  Sum_probs=171.7

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC-------CHHHHHHHHHHHHhcCCCCccceeccccc--cee
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-------SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKC  404 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-------~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~  404 (683)
                      +.|.. .+++|.|+||.||+|.+  +|..||||++....       ....+.+|+.++..++|||||++++++.+  ..+
T Consensus        10 ~~y~~-~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   88 (346)
T 1ua2_A           10 KRYEK-LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNIS   88 (346)
T ss_dssp             ---CE-EEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCE
T ss_pred             cccEE-EeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCceE
Confidence            34433 46778999999999998  58999999997321       12468899999999999999999999866  789


Q ss_pred             EEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEec
Q 005680          405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISG  484 (683)
Q Consensus       405 LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~D  484 (683)
                      +||||+++ +|.+++.         .....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|
T Consensus        89 lv~e~~~~-~l~~~~~---------~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~kl~D  155 (346)
T 1ua2_A           89 LVFDFMET-DLEVIIK---------DNSLVLTPSHIKAYMLMTLQGLEYLHQ---HWILHRDLKPNNLLLDENGVLKLAD  155 (346)
T ss_dssp             EEEECCSE-EHHHHHT---------TCCSSCCSSHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECC
T ss_pred             EEEEcCCC-CHHHHHH---------hcCcCCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCCHHHEEEcCCCCEEEEe
Confidence            99999985 8988884         233568899999999999999999999   6799999999999999999999999


Q ss_pred             CCCccc--------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCC
Q 005680          485 LGLNIC--------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNA  538 (683)
Q Consensus       485 FGla~~--------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~  538 (683)
                      ||+++.                          ..++.++|||||||++|+|++|.+||......... ...+.....+..
T Consensus       156 fg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~-~~i~~~~~~~~~  234 (346)
T 1ua2_A          156 FGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQL-TRIFETLGTPTE  234 (346)
T ss_dssp             CGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH-HHHHHHHCCCCT
T ss_pred             cccceeccCCcccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHH-HHHHHHcCCCCh
Confidence            998753                          13678899999999999999999998653221100 011111111111


Q ss_pred             CCCC-----------------------hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          539 GIWP-----------------------LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       539 ~~~p-----------------------~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ..|+                       ..++..+.+|+.+||..|  |..|||+.++++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~Rpt~~ell~h  292 (346)
T 1ua2_A          235 EQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFN--PCARITATQALKM  292 (346)
T ss_dssp             TTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSS--TTTSCCHHHHHTS
T ss_pred             hhhhhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccC--hhhCCCHHHHhcC
Confidence            1111                       345688999999999999  8899999998763

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=2.1e-34  Score=299.25  Aligned_cols=217  Identities=19%  Similarity=0.255  Sum_probs=173.0

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC-CCHHHHHHHHHHHHhcCCCCccceecccc------------
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCS------------  400 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~------------  400 (683)
                      ++|.. .+++|.|+||.||+|..  +|..||||++... .....+.+|+.++.+++||||++++++|.            
T Consensus         6 ~~y~~-~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~   84 (303)
T 1zy4_A            6 SDFEE-IAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAV   84 (303)
T ss_dssp             HHEEE-EEEEEECSSEEEEEEEETTTCCEEEEEEEEEEHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC-----
T ss_pred             ccchh-hheeccCCcEEEEEEEEcCCCeEEEEEEEeccHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhccc
Confidence            34433 35678999999999997  6899999999632 23467889999999999999999999863            


Q ss_pred             ---cceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC
Q 005680          401 ---ELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN  477 (683)
Q Consensus       401 ---~~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~  477 (683)
                         +..|+||||+++|+|.+++..         ....+++..++.++.||+.||.|||+   .+|+||||||+|||++.+
T Consensus        85 ~~~~~~~lv~e~~~~~~L~~~l~~---------~~~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dlkp~Nil~~~~  152 (303)
T 1zy4_A           85 KKKSTLFIQMEYCENGTLYDLIHS---------ENLNQQRDEYWRLFRQILEALSYIHS---QGIIHRDLKPMNIFIDES  152 (303)
T ss_dssp             -CEEEEEEEEECCCSCBHHHHHHH---------SCGGGCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTT
T ss_pred             ccCCceEEEEecCCCCCHHHhhhc---------cccccchHHHHHHHHHHHHHHHHHHh---CCeecccCCHHhEEEcCC
Confidence               257899999999999999952         33567889999999999999999999   679999999999999999


Q ss_pred             CcEEEecCCCccc----------------------------------------cCCCcccccccHHHHHHHHhhCCCCch
Q 005680          478 LVAKISGLGLNIC----------------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAG  517 (683)
Q Consensus       478 ~~~KL~DFGla~~----------------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~  517 (683)
                      +.+||+|||++..                                        ..++.++|||||||++|+|++   ||.
T Consensus       153 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~  229 (303)
T 1zy4_A          153 RNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFS  229 (303)
T ss_dssp             SCEEECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCS
T ss_pred             CCEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccC
Confidence            9999999998741                                        246789999999999999999   333


Q ss_pred             hhHHHhhhhHHHHHHHhc---CCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          518 LVEKAMALDQTTLMQVLD---GNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       518 ~~~~~~~~~~~~~~~ild---~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .....    ......+..   .....++...+..+.+|+.+||+.|  |..|||+.++++
T Consensus       230 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~d--p~~Rps~~~ll~  283 (303)
T 1zy4_A          230 TGMER----VNILKKLRSVSIEFPPDFDDNKMKVEKKIIRLLIDHD--PNKRPGARTLLN  283 (303)
T ss_dssp             SHHHH----HHHHHHHHSTTCCCCTTCCTTTSHHHHHHHHHHTCSS--GGGSCCHHHHHH
T ss_pred             CchhH----HHHHHhccccccccCccccccchHHHHHHHHHHHhcC--cccCcCHHHHhC
Confidence            21111    111112221   1233445567788999999999999  889999999875

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=2e-35  Score=310.91  Aligned_cols=227  Identities=22%  Similarity=0.300  Sum_probs=179.0

Q ss_pred             hcCccccccccccCCceEEEEEEECCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEe
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFE  408 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~E  408 (683)
                      .++|.. .+++|.|+||.||+|.+.+ .||||++...    .....+.+|+.++.+++||||+++++++.+  ..++|||
T Consensus        32 ~~~~~~-~~~lg~G~~g~V~~~~~~~-~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~e  109 (319)
T 2y4i_B           32 FEQLEI-GELIGKGRFGQVYHGRWHG-EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITS  109 (319)
T ss_dssp             CSCEEC-CCBCCCSSSSEEEEEEESS-SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEECB
T ss_pred             HHHeEE-eeEeccCCceEEEEEEEcC-eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEee
Confidence            445543 4677899999999999865 5999998722    223567899999999999999999999966  7899999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCc
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN  488 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla  488 (683)
                      |+++++|.+++..         ....+++..++.|+.||+.||.|||+   .+|+||||||+|||++ ++.+||+|||++
T Consensus       110 ~~~~~~L~~~l~~---------~~~~~~~~~~~~i~~qi~~al~~lH~---~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~  176 (319)
T 2y4i_B          110 LCKGRTLYSVVRD---------AKIVLDVNKTRQIAQEIVKGMGYLHA---KGILHKDLKSKNVFYD-NGKVVITDFGLF  176 (319)
T ss_dssp             CCCSEEHHHHTTS---------SCCCCCSHHHHHHHHHHHHHHHHHHH---TTCCCCCCCSTTEEEC---CCEECCCSCC
T ss_pred             cccCCcHHHHHHh---------cCCCCCHHHHHHHHHHHHHHHHHHHh---CCccccCCChhhEEEe-CCCEEEeecCCc
Confidence            9999999999942         23468999999999999999999999   6799999999999998 689999999985


Q ss_pred             cc---------------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHH
Q 005680          489 IC---------------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTT  529 (683)
Q Consensus       489 ~~---------------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~  529 (683)
                      ..                                       ..++.++|||||||++|+|++|+.||.....     ...
T Consensus       177 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~-----~~~  251 (319)
T 2y4i_B          177 SISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPA-----EAI  251 (319)
T ss_dssp             C----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCH-----HHH
T ss_pred             cccccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-----HHH
Confidence            32                                       1257789999999999999999999975322     112


Q ss_pred             HHHHhcCCCCC-CChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          530 LMQVLDGNAGI-WPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       530 ~~~ild~~~~~-~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      ...+....... .+..++..+.+|+.+||..|  |..|||+.++++.|+.+....
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~--p~~Rpt~~~l~~~l~~l~~~~  304 (319)
T 2y4i_B          252 IWQMGTGMKPNLSQIGMGKEISDILLFCWAFE--QEERPTFTKLMDMLEKLPKRN  304 (319)
T ss_dssp             HHHHHTTCCCCCCCSSCCTTHHHHHHHHHCSS--TTTSCCHHHHHHHHTTC----
T ss_pred             HHHhccCCCCCCCcCCCCHHHHHHHHHHhcCC--hhhCcCHHHHHHHHHHHHHhh
Confidence            22232322222 22356788999999999999  789999999999999887543

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=9.8e-35  Score=324.74  Aligned_cols=221  Identities=18%  Similarity=0.231  Sum_probs=170.0

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc--------
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--------  401 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--------  401 (683)
                      ++|. ..+.+|+|+||.||+|..  +|+.||||++...    .....+.+|+.+|+.++|||||++++++..        
T Consensus        62 ~~y~-~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  140 (464)
T 3ttj_A           62 KRYQ-NLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ  140 (464)
T ss_dssp             TTEE-EEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred             CCeE-EEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence            3443 346778999999999998  6899999999732    224578899999999999999999999853        


Q ss_pred             ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEE
Q 005680          402 LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAK  481 (683)
Q Consensus       402 ~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~K  481 (683)
                      ..||||||+++ +|.+.+.            ..+++..+..|+.||+.||.|||+   .+|+||||||+||||+.++.+|
T Consensus       141 ~~~lv~E~~~~-~l~~~~~------------~~l~~~~~~~~~~qil~aL~~lH~---~~iiHrDlkp~NIll~~~~~~k  204 (464)
T 3ttj_A          141 DVYLVMELMDA-NLCQVIQ------------MELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLK  204 (464)
T ss_dssp             EEEEEEECCSE-EHHHHHT------------SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEE
T ss_pred             eEEEEEeCCCC-CHHHHHh------------hcCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChHhEEEeCCCCEE
Confidence            35999999985 5666662            238999999999999999999999   6799999999999999999999


Q ss_pred             EecCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh-----------
Q 005680          482 ISGLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD-----------  526 (683)
Q Consensus       482 L~DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~-----------  526 (683)
                      |+|||+++.                        ..|+.++|||||||++|+|++|++||..........           
T Consensus       205 l~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p~~  284 (464)
T 3ttj_A          205 ILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCP  284 (464)
T ss_dssp             ECCCCCC-----CCCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCH
T ss_pred             EEEEEeeeecCCCcccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCH
Confidence            999999853                        357889999999999999999999996432110000           


Q ss_pred             ------HHHHHHHhcCCC--C--C----CCh-----------hhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          527 ------QTTLMQVLDGNA--G--I----WPL-----------DLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       527 ------~~~~~~ild~~~--~--~----~p~-----------~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                            .......+....  .  .    +|.           ..++.+.+|+.+||..|  |.+|||+.++++.
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~d--P~~R~ta~e~L~H  356 (464)
T 3ttj_A          285 EFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVID--PAKRISVDDALQH  356 (464)
T ss_dssp             HHHTTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSS--TTTSCCHHHHHTS
T ss_pred             HHHHHcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCC--hhhCCCHHHHhcC
Confidence                  001111111100  0  0    010           12678999999999999  8899999998764

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=4.9e-35  Score=304.86  Aligned_cols=226  Identities=19%  Similarity=0.271  Sum_probs=166.3

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC---CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEe
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG---LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFE  408 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~---~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~E  408 (683)
                      ++|.. .+.+|.|+||.||+|..  ++..||||++...   .....+.+|+.++.+++||||+++++++.+  ..++|||
T Consensus        15 ~~y~~-~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   93 (303)
T 2vwi_A           15 DDYEL-QEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMK   93 (303)
T ss_dssp             CCCEE-EEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEEEE
T ss_pred             hhhhh-hheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEeh
Confidence            44543 46778999999999987  6899999998732   234678899999999999999999999865  7899999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCc
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN  488 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla  488 (683)
                      |+++|+|.+++........  .....+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+|||++
T Consensus        94 ~~~~~~L~~~l~~~~~~~~--~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~  168 (303)
T 2vwi_A           94 LLSGGSVLDIIKHIVAKGE--HKSGVLDESTIATILREVLEGLEYLHK---NGQIHRDVKAGNILLGEDGSVQIADFGVS  168 (303)
T ss_dssp             CCTTCBHHHHHHHHHHTTT--TTTCSSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTCCEEECCCHHH
T ss_pred             hccCCchHHHHHHHhhccc--cccCCCCHHHHHHHHHHHHHHHHHHHh---CCCCCCCCChhhEEEcCCCCEEEEeccch
Confidence            9999999999964211000  134569999999999999999999999   67999999999999999999999999976


Q ss_pred             cc-------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCC
Q 005680          489 IC-------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGN  537 (683)
Q Consensus       489 ~~-------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~  537 (683)
                      ..                               ..++.++|||||||++|+|++|+.||......     ..........
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-----~~~~~~~~~~  243 (303)
T 2vwi_A          169 AFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPM-----KVLMLTLQND  243 (303)
T ss_dssp             HHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGG-----GHHHHHHTSS
T ss_pred             heeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchh-----hHHHHHhccC
Confidence            31                               23688999999999999999999999753221     1111111111


Q ss_pred             C---------CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          538 A---------GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       538 ~---------~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .         ......++..+.+|+.+||+.|  |..|||+.++++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~d--p~~Rps~~~ll~  287 (303)
T 2vwi_A          244 PPSLETGVQDKEMLKKYGKSFRKMISLCLQKD--PEKRPTAAELLR  287 (303)
T ss_dssp             CCCTTC-----CCCCCCCHHHHHHHHHHCCSS--GGGSCCHHHHHT
T ss_pred             CCccccccccchhhhhhhHHHHHHHHHHccCC--hhhCcCHHHHhh
Confidence            1         1222356788999999999999  889999999875

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.6e-34  Score=316.35  Aligned_cols=231  Identities=16%  Similarity=0.246  Sum_probs=167.2

Q ss_pred             ccccccccccCCceEEEEEEE----CCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceecccc--c--ceeEEEee
Q 005680          338 FSERFRLKCAGDWTNVYRGRL----NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCS--E--LKCIVFEY  409 (683)
Q Consensus       338 F~~~~~liG~G~fG~Vykg~~----~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~--~--~~~LV~Ey  409 (683)
                      |....+++|+|+||.||+|.+    ++..||||++........+.+|+.+|++++|||||+++++|.  +  ..||||||
T Consensus        22 y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~e~  101 (405)
T 3rgf_A           22 FEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDY  101 (405)
T ss_dssp             EECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSCCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEEEC
T ss_pred             hhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCCCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEEeC
Confidence            444455789999999999996    368899999986665678999999999999999999999983  2  78999999


Q ss_pred             cCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccc----cCCCcEEEecC
Q 005680          410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL----DRNLVAKISGL  485 (683)
Q Consensus       410 ~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILl----d~~~~~KL~DF  485 (683)
                      +. |+|.+++........ ......+++..++.|+.||+.||.|||+   .+|+||||||+||||    +.++.+||+||
T Consensus       102 ~~-~~l~~~~~~~~~~~~-~~~~~~l~~~~~~~i~~qi~~al~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~kl~Df  176 (405)
T 3rgf_A          102 AE-HDLWHIIKFHRASKA-NKKPVQLPRGMVKSLLYQILDGIHYLHA---NWVLHRDLKPANILVMGEGPERGRVKIADM  176 (405)
T ss_dssp             CS-EEHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECCSSTTTTCEEECCT
T ss_pred             CC-CCHHHHHHHhccccc-cccccCCCHHHHHHHHHHHHHHHHHHHh---CCEeCCCcCHHHeEEecCCCCCCcEEEEEC
Confidence            97 688888853321000 0123359999999999999999999999   679999999999999    77899999999


Q ss_pred             CCccc-----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHH----hhhhHHHHHH
Q 005680          486 GLNIC-----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKA----MALDQTTLMQ  532 (683)
Q Consensus       486 Gla~~-----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~----~~~~~~~~~~  532 (683)
                      |+++.                             ..++.++|||||||++|+|+||++||......    .......+..
T Consensus       177 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~l~~  256 (405)
T 3rgf_A          177 GFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDR  256 (405)
T ss_dssp             TCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHHHHHH
T ss_pred             CCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHHHHHH
Confidence            99842                             23788999999999999999999999532110    0000111111


Q ss_pred             Hhc----CCCCCCC---------------------------------hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          533 VLD----GNAGIWP---------------------------------LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       533 ild----~~~~~~p---------------------------------~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ++.    +....|+                                 ...+..+.+||.+||..|  |.+|||+.++++.
T Consensus       257 i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~d--P~~R~ta~e~L~h  334 (405)
T 3rgf_A          257 IFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMD--PIKRITSEQAMQD  334 (405)
T ss_dssp             HHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSS--GGGSCCHHHHHTS
T ss_pred             HHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCC--cccCCCHHHHhcC
Confidence            111    0000010                                 012567899999999999  8899999988753

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=1.2e-34  Score=322.20  Aligned_cols=222  Identities=16%  Similarity=0.220  Sum_probs=162.9

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc-------c
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE-------L  402 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-------~  402 (683)
                      ++|. ..+++|.|+||.||+|.+  +|+.||||++....    ....+.+|+.+|..++|||||+++++|..       .
T Consensus        53 ~~y~-~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~  131 (458)
T 3rp9_A           53 DRYE-IRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE  131 (458)
T ss_dssp             TTEE-ECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             CCeE-EeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence            4453 446778999999999987  68999999986322    23578899999999999999999999832       5


Q ss_pred             eeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEE
Q 005680          403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKI  482 (683)
Q Consensus       403 ~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL  482 (683)
                      .||||||+. |+|.+++          .....+++..+..|+.||+.||.|||+   .+||||||||+||||+.++.+||
T Consensus       132 ~~lv~e~~~-~~L~~~~----------~~~~~l~~~~~~~~~~qi~~aL~~LH~---~~iiHrDlKp~NILl~~~~~~kl  197 (458)
T 3rp9_A          132 LYVVLEIAD-SDFKKLF----------RTPVYLTELHIKTLLYNLLVGVKYVHS---AGILHRDLKPANCLVNQDCSVKV  197 (458)
T ss_dssp             EEEEECCCS-EEHHHHH----------HSSCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTCCEEE
T ss_pred             EEEEEeccc-cchhhhc----------ccCCCCCHHHHHHHHHHHHHHHHHHHh---CCcCCCCCChhhEEECCCCCEee
Confidence            799999985 7999998          345679999999999999999999999   67999999999999999999999


Q ss_pred             ecCCCccc-----------------------------------------------------cCCCcccccccHHHHHHHH
Q 005680          483 SGLGLNIC-----------------------------------------------------DQLNVRSDIRAFGTLLLHL  509 (683)
Q Consensus       483 ~DFGla~~-----------------------------------------------------~~~t~ksDVwSlGviL~eL  509 (683)
                      +|||+|+.                                                     ..++.++||||||||||||
T Consensus       198 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~el  277 (458)
T 3rp9_A          198 CDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAEL  277 (458)
T ss_dssp             CCCTTCBCTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHH
T ss_pred             cccccchhccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHH
Confidence            99999741                                                     2377899999999999999


Q ss_pred             hh-----------CCCCchhhHHH---------------hhhhHHHHHHH---h--------------------cCC--C
Q 005680          510 LT-----------GRNWAGLVEKA---------------MALDQTTLMQV---L--------------------DGN--A  538 (683)
Q Consensus       510 lt-----------G~~Pf~~~~~~---------------~~~~~~~~~~i---l--------------------d~~--~  538 (683)
                      +|           |+++|......               .......+..+   +                    ...  .
T Consensus       278 ltg~~~~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~  357 (458)
T 3rp9_A          278 LNMIKENVAYHADRGPLFPGSSCFPLSPDQKAGNDFKFHTRGNRDQLNVIFNILGTPSEEDIEALEKEDAKRYIRIFPKR  357 (458)
T ss_dssp             HTTSTTTCSSGGGCCCSCC--------------------CHHHHHHHHHHHHHHCCCCHHHHHTSSCHHHHHHHTTSCCC
T ss_pred             HHhccccccccccccccCCCCccccccccccccccccccccCCHHHHHHHHHHcCCCCHHHHhhcCCHHHHHHHHhcCCC
Confidence            99           66666432100               00000001001   0                    000  0


Q ss_pred             -----CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          539 -----GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       539 -----~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                           ....+..++.+.+|+.+||..|  |.+|||+.++++
T Consensus       358 ~~~~~~~~~~~~s~~~~dLl~~mL~~d--P~~R~t~~e~L~  396 (458)
T 3rp9_A          358 EGTDLAERFPASSADAIHLLKRMLVFN--PNKRITINECLA  396 (458)
T ss_dssp             CCCCGGGGSTTSCHHHHHHHHHHSCSS--TTTSCCHHHHHH
T ss_pred             CCCCHHHHCCCCCHHHHHHHHHHhccC--ccccCCHHHHhc
Confidence                 0011245788999999999999  889999998876

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=2e-34  Score=309.49  Aligned_cols=231  Identities=17%  Similarity=0.210  Sum_probs=179.0

Q ss_pred             HHHHHHhhcCccccccccccCCceEEEEEEE-CCeeEEEEEcCCCCC-------------HHHHHHHHHHHHhcCCCCcc
Q 005680          328 AEDIRLATEDFSERFRLKCAGDWTNVYRGRL-NHASVAIKTLNNGLS-------------EEDFQAKVSFLTAVRHPHLV  393 (683)
Q Consensus       328 ~~ei~~at~~F~~~~~liG~G~fG~Vykg~~-~g~~VAvK~l~~~~~-------------~~~~~~Ev~iL~~l~HpnIV  393 (683)
                      +.++....++|... +.+|.|+||.||+|.. +|..||||++.....             ...+.+|+.++.+++||||+
T Consensus        14 ~~~~~~~~~~y~~~-~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv   92 (362)
T 3pg1_A           14 IAELHAMQSPYTVQ-RFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL   92 (362)
T ss_dssp             HHHHHHTTCSCEEE-EEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred             HHHHHHhccceEEe-EEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence            45666777787654 5678999999999988 689999999862111             26789999999999999999


Q ss_pred             ceeccccc-------ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEecc
Q 005680          394 AVMGCCSE-------LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGS  466 (683)
Q Consensus       394 ~l~g~~~~-------~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrD  466 (683)
                      ++++++..       ..|+||||++ |+|.+++.         .....+++..+..|+.||+.||.|||+   .+|+|||
T Consensus        93 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~---------~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~D  159 (362)
T 3pg1_A           93 GLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIH---------DQRIVISPQHIQYFMYHILLGLHVLHE---AGVVHRD  159 (362)
T ss_dssp             CCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHH---------CTTSCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCC
T ss_pred             ceeeeEEeccCCCcceEEEEEccCC-CCHHHHHH---------hcccCCCHHHHHHHHHHHHHHHHHHHH---CcCEecC
Confidence            99999832       4699999998 68888884         234579999999999999999999999   6799999


Q ss_pred             CCCCcccccCCCcEEEecCCCccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHH
Q 005680          467 LTPSSILLDRNLVAKISGLGLNIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEK  521 (683)
Q Consensus       467 LKP~NILld~~~~~KL~DFGla~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~  521 (683)
                      |||+|||++.++.+||+|||++..                         ..++.++|||||||++|+|++|++||.....
T Consensus       160 lkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~  239 (362)
T 3pg1_A          160 LHPGNILLADNNDITICDFNLAREDTADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTF  239 (362)
T ss_dssp             CCGGGEEECTTCCEEECCTTC---------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             CChHHEEEcCCCCEEEEecCcccccccccccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCH
Confidence            999999999999999999999842                         2468899999999999999999999964321


Q ss_pred             Hhhhh------------------HHHHHHHhcCCCCCC--------ChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          522 AMALD------------------QTTLMQVLDGNAGIW--------PLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       522 ~~~~~------------------~~~~~~ild~~~~~~--------p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .....                  .......+.......        ++..++.+.+|+.+||+.|  |..|||+.++++
T Consensus       240 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~Rpt~~ell~  316 (362)
T 3pg1_A          240 YNQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFN--PQRRISTEQALR  316 (362)
T ss_dssp             HHHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSS--GGGSCCHHHHHT
T ss_pred             HHHHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCC--hhhCCCHHHHHc
Confidence            10000                  000111111111111        2245678999999999999  889999999875

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=2e-35  Score=319.39  Aligned_cols=219  Identities=14%  Similarity=0.035  Sum_probs=156.4

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcCCCCC-----HHHHHHHHHHHHhc--CCCCccceecccc-----------
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLS-----EEDFQAKVSFLTAV--RHPHLVAVMGCCS-----------  400 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~-----~~~~~~Ev~iL~~l--~HpnIV~l~g~~~-----------  400 (683)
                      ..+.+|+|+||.||+|.+  +|+.||||++.....     ...+.+|+.++..+  +|||||+++..+.           
T Consensus        66 ~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~~~~~  145 (371)
T 3q60_A           66 LVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVAVQSQ  145 (371)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEEETTS
T ss_pred             eeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehheecCCC
Confidence            346778999999999997  689999999984332     34577885555444  6999888654332           


Q ss_pred             ---------------cceeEEEeecCCCCchhhhhhcccccccccccccCCHHHH------HHHHHHHHhhhhhhccCCC
Q 005680          401 ---------------ELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDR------IHIAHEVCLGLSFLHSTEP  459 (683)
Q Consensus       401 ---------------~~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~------~~I~~qIa~aL~yLH~~~~  459 (683)
                                     ...||||||++ |+|.+++...         ...+++..+      ..++.||+.||.|||+   
T Consensus       146 ~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~---------~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~---  212 (371)
T 3q60_A          146 PPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTL---------DFVYVFRGDEGILALHILTAQLIRLAANLQS---  212 (371)
T ss_dssp             CSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHH---------HHSCCCCHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             CCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHh---------ccccchhhhhhhhhHHHHHHHHHHHHHHHHH---
Confidence                           23799999999 8999999643         223455555      6788999999999999   


Q ss_pred             CcEEeccCCCCcccccCCCcEEEecCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCC
Q 005680          460 RPIVHGSLTPSSILLDRNLVAKISGLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNW  515 (683)
Q Consensus       460 ~~IiHrDLKP~NILld~~~~~KL~DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~P  515 (683)
                      .+|+||||||+||||+.++.+||+|||+++.                        ..++.++|||||||++|+|+||++|
T Consensus       213 ~~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~P  292 (371)
T 3q60_A          213 KGLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLP  292 (371)
T ss_dssp             TTEEETTCSGGGEEECTTSCEEECCGGGEEETTCEEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCS
T ss_pred             CCCccCcCCHHHEEECCCCCEEEEecceeeecCCCccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCC
Confidence            6799999999999999999999999999843                        2478899999999999999999999


Q ss_pred             chhhHHHhhh--hHHHHHHHhc-CCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          516 AGLVEKAMAL--DQTTLMQVLD-GNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       516 f~~~~~~~~~--~~~~~~~ild-~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      |.........  .......... ......+..+++.+.+|+.+||+.|  |..|||+.++++
T Consensus       293 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~Rpt~~e~l~  352 (371)
T 3q60_A          293 FGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFD--RRRRLLPLEAME  352 (371)
T ss_dssp             TTBCCTTCTTCCCBCCTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSS--TTTCCCHHHHTT
T ss_pred             CCCcCcccccchhhhhhhhccccccchhhccCCCHHHHHHHHHHcCCC--hhhCCCHHHHhc
Confidence            9753211000  0000000000 1111222467899999999999999  889999999975

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=1.3e-34  Score=313.26  Aligned_cols=224  Identities=21%  Similarity=0.301  Sum_probs=173.8

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC-CCHHHHHHHHHHHHhcC--------CCCccceecccc----
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-LSEEDFQAKVSFLTAVR--------HPHLVAVMGCCS----  400 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-~~~~~~~~Ev~iL~~l~--------HpnIV~l~g~~~----  400 (683)
                      ++|. ..+.+|+|+||.||+|..  +|+.||||++... .....+.+|+.++..++        ||||+++++++.    
T Consensus        37 ~~y~-~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~  115 (397)
T 1wak_A           37 GRYH-VIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGV  115 (397)
T ss_dssp             TTEE-EEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEET
T ss_pred             CeEE-EEEEeeecCCeeEEEEEecCCCeEEEEEEEecCCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCC
Confidence            3443 346678999999999987  6899999999743 23467889999999995        788999999885    


Q ss_pred             c--ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCC-cEEeccCCCCcccccCC
Q 005680          401 E--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPR-PIVHGSLTPSSILLDRN  477 (683)
Q Consensus       401 ~--~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~-~IiHrDLKP~NILld~~  477 (683)
                      +  ..||||||+ +|+|.+++...        ....+++..+..|+.||+.||.|||+   . +|+||||||+||||+.+
T Consensus       116 ~~~~~~lv~e~~-~~~l~~~~~~~--------~~~~~~~~~~~~i~~qi~~aL~~lH~---~~givHrDikp~NIll~~~  183 (397)
T 1wak_A          116 NGTHICMVFEVL-GHHLLKWIIKS--------NYQGLPLPCVKKIIQQVLQGLDYLHT---KCRIIHTDIKPENILLSVN  183 (397)
T ss_dssp             TEEEEEEEECCC-CCBHHHHHHHT--------TTSCCCHHHHHHHHHHHHHHHHHHHH---TTCEECCCCSGGGEEECCC
T ss_pred             CCceEEEEEecc-CccHHHHHHhc--------ccCCCCHHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHeeEecc
Confidence            2  689999999 56777776422        23569999999999999999999999   5 79999999999999977


Q ss_pred             C-------------------------------------------------cEEEecCCCccc------------------
Q 005680          478 L-------------------------------------------------VAKISGLGLNIC------------------  490 (683)
Q Consensus       478 ~-------------------------------------------------~~KL~DFGla~~------------------  490 (683)
                      +                                                 .+||+|||++..                  
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~gt~~y~aPE  263 (397)
T 1wak_A          184 EQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLE  263 (397)
T ss_dssp             HHHHHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBCSCSCCSCGGGCCHH
T ss_pred             chhhhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccccCccCCCCCcccCCh
Confidence            5                                                 799999999852                  


Q ss_pred             ----cCCCcccccccHHHHHHHHhhCCCCchhhHHHh-hhhH---HHHHHHhcC--------------------------
Q 005680          491 ----DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAM-ALDQ---TTLMQVLDG--------------------------  536 (683)
Q Consensus       491 ----~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~-~~~~---~~~~~ild~--------------------------  536 (683)
                          ..++.++|||||||++|+|+||++||....... ....   ..+...+..                          
T Consensus       264 ~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  343 (397)
T 1wak_A          264 VLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHIT  343 (397)
T ss_dssp             HHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCC
T ss_pred             hhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCcccccccc
Confidence                347899999999999999999999995321100 0000   001011000                          


Q ss_pred             ------------CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          537 ------------NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       537 ------------~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                                  ....++...+..+.+|+.+||+.|  |.+|||+.++++
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~Rpt~~e~l~  391 (397)
T 1wak_A          344 KLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELI--PEKRATAAECLR  391 (397)
T ss_dssp             CCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSS--GGGSCCHHHHHT
T ss_pred             ccCCcchhHhhhhhcccchhhHHHHHHHHHHHhccC--hhhcCCHHHHhh
Confidence                        012345677889999999999999  889999999875

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=5.1e-34  Score=307.63  Aligned_cols=223  Identities=18%  Similarity=0.200  Sum_probs=174.0

Q ss_pred             hhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc-------
Q 005680          334 ATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE-------  401 (683)
Q Consensus       334 at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-------  401 (683)
                      ..+.|.. .+.+|+|+||.||+|..  ++..||||++.....   ...+.+|+.++.+++||||+++++++..       
T Consensus        25 ~~~~y~~-~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~  103 (364)
T 3qyz_A           25 VGPRYTN-LSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMK  103 (364)
T ss_dssp             CTTTEEE-EEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCC
T ss_pred             ccccEEE-EEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccc
Confidence            3445544 46778999999999998  689999999974332   2578899999999999999999998843       


Q ss_pred             ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEE
Q 005680          402 LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAK  481 (683)
Q Consensus       402 ~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~K  481 (683)
                      ..|+||||+. |+|.+++.           ...+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++.+|
T Consensus       104 ~~~iv~e~~~-~~L~~~l~-----------~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~k  168 (364)
T 3qyz_A          104 DVYIVQDLME-TDLYKLLK-----------TQHLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLK  168 (364)
T ss_dssp             CEEEEEECCS-EEHHHHHH-----------HCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEE
T ss_pred             eEEEEEcccC-cCHHHHHH-----------hCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCChHhEEECCCCCEE
Confidence            4799999997 69999883           2359999999999999999999999   6799999999999999999999


Q ss_pred             EecCCCccc-----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhH-----
Q 005680          482 ISGLGLNIC-----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQ-----  527 (683)
Q Consensus       482 L~DFGla~~-----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~-----  527 (683)
                      |+|||++..                             ..++.++|||||||++|+|++|++||...........     
T Consensus       169 l~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~  248 (364)
T 3qyz_A          169 ICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGIL  248 (364)
T ss_dssp             ECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHH
T ss_pred             EEeCcceEecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHh
Confidence            999998742                             2368899999999999999999999964221100000     


Q ss_pred             -----H--------HHHHHhc--CCCCCC-----ChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          528 -----T--------TLMQVLD--GNAGIW-----PLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       528 -----~--------~~~~ild--~~~~~~-----p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                           .        .......  +.....     .+.++..+.+|+.+||+.|  |.+|||+.++++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~R~t~~e~l~  313 (364)
T 3qyz_A          249 GSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFN--PHKRIEVEQALA  313 (364)
T ss_dssp             CSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSS--TTTSCCHHHHHT
T ss_pred             CCCCHHHHHHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCC--hhhCCCHHHHhc
Confidence                 0        0000000  001111     1345788999999999999  889999999875

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=5.9e-34  Score=305.03  Aligned_cols=235  Identities=17%  Similarity=0.196  Sum_probs=169.1

Q ss_pred             HHHHHhhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCC-CCCHHHHHHHHHHHHhcCCCCccceeccccc----
Q 005680          329 EDIRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE----  401 (683)
Q Consensus       329 ~ei~~at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----  401 (683)
                      .......++|... +.+|.|+||.||+|.+  +|..||||++.. ......+.+++..+..++|||||+++++|..    
T Consensus        16 ~~~~~~~~~y~~~-~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~   94 (360)
T 3e3p_A           16 ERSRKEMDRFQVE-RMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER   94 (360)
T ss_dssp             HHHHHHHTTEEEC-----------CEEEEETTTCCEEEEEEEECCTTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred             hhchhhccceEEE-EEEecCCCeEEEEEEECCCCCEEEEEEEecCccccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence            3455666777654 5678999999999998  589999998863 3334567888999999999999999999843    


Q ss_pred             -----ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC
Q 005680          402 -----LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR  476 (683)
Q Consensus       402 -----~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~  476 (683)
                           ..++||||+++ +|.+.+....      .....+++..+..++.||+.||.|||.+. .+|+||||||+|||++.
T Consensus        95 ~~~~~~~~lv~e~~~~-~l~~~~~~~~------~~~~~~~~~~~~~~~~qi~~al~~lH~~~-~~ivH~Dlkp~NIll~~  166 (360)
T 3e3p_A           95 DRRDIYLNVVMEYVPD-TLHRCCRNYY------RRQVAPPPILIKVFLFQLIRSIGCLHLPS-VNVCHRDIKPHNVLVNE  166 (360)
T ss_dssp             CTTCEEEEEEEECCSC-BHHHHHHHHH------TTTCCCCHHHHHHHHHHHHHHHHHHTSTT-TCCBCSCCCGGGEEEET
T ss_pred             cccceeEEEEeecccc-cHHHHHHHHh------hcccCCCHHHHHHHHHHHHHHHHHHhCCC-CCeecCcCCHHHEEEeC
Confidence                 27899999985 5555553221      34567899999999999999999999322 77999999999999996


Q ss_pred             -CCcEEEecCCCccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhH---
Q 005680          477 -NLVAKISGLGLNIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQ---  527 (683)
Q Consensus       477 -~~~~KL~DFGla~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~---  527 (683)
                       ++.+||+|||++..                         ..++.++|||||||++|+|+||++||...........   
T Consensus       167 ~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~  246 (360)
T 3e3p_A          167 ADGTLKLCDFGSAKKLSPSEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVR  246 (360)
T ss_dssp             TTTEEEECCCTTCBCCCTTSCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             CCCcEEEeeCCCceecCCCCCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHH
Confidence             89999999999853                         2368899999999999999999999964322100000   


Q ss_pred             ------HHHHHHhcCC-----------------CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          528 ------TTLMQVLDGN-----------------AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       528 ------~~~~~ild~~-----------------~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                            ......+.+.                 ....+...++.+.+|+.+||+.|  |..|||+.++++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~Rpt~~e~l~  314 (360)
T 3e3p_A          247 VLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYL--PEERMKPYEALC  314 (360)
T ss_dssp             HHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSS--GGGSCCHHHHTT
T ss_pred             HcCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccC--ccccCCHHHHhc
Confidence                  0000001100                 11122336789999999999999  889999999875

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=4.1e-34  Score=305.54  Aligned_cols=225  Identities=19%  Similarity=0.250  Sum_probs=170.3

Q ss_pred             hhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHH-HHHHhcCCCCccceeccccc------cee
Q 005680          334 ATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKV-SFLTAVRHPHLVAVMGCCSE------LKC  404 (683)
Q Consensus       334 at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev-~iL~~l~HpnIV~l~g~~~~------~~~  404 (683)
                      ..++|....+++|.|+||.||+|..  +|+.||||++...   ....+|+ ..+..+.||||+++++++..      ..+
T Consensus        26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~  102 (336)
T 3fhr_A           26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS---PKARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLL  102 (336)
T ss_dssp             GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS---HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred             ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc---HHHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceEE
Confidence            4567777667889999999999998  5899999998642   2233333 44667799999999999854      478


Q ss_pred             EEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC---CCcEE
Q 005680          405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR---NLVAK  481 (683)
Q Consensus       405 LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~---~~~~K  481 (683)
                      |||||++||+|.+++...        ....+++..++.|+.||+.||.|||+   .+|+||||||+|||++.   ++.+|
T Consensus       103 lv~e~~~gg~L~~~l~~~--------~~~~l~~~~~~~i~~ql~~~l~~LH~---~~ivH~dlkp~NIll~~~~~~~~~k  171 (336)
T 3fhr_A          103 IIMECMEGGELFSRIQER--------GDQAFTEREAAEIMRDIGTAIQFLHS---HNIAHRDVKPENLLYTSKEKDAVLK  171 (336)
T ss_dssp             EEEECCTTEEHHHHHHTC---------CCCCBHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCSSTTCCEE
T ss_pred             EEEeccCCCCHHHHHHhc--------CCCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEEecCCCceEE
Confidence            999999999999999532        23579999999999999999999999   67999999999999976   45699


Q ss_pred             EecCCCccc-----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC--
Q 005680          482 ISGLGLNIC-----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG--  536 (683)
Q Consensus       482 L~DFGla~~-----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~--  536 (683)
                      |+|||++..                       ..++.++|||||||++|+|++|.+||....... ........+...  
T Consensus       172 l~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~~~~~  250 (336)
T 3fhr_A          172 LTDFGFAKETTQNALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQA-ISPGMKRRIRLGQY  250 (336)
T ss_dssp             ECCCTTCEEC----------------------CHHHHHHHHHHHHHHHHHHHHSSCCC----------------------
T ss_pred             EeccccceeccccccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchh-hhhhHHHhhhcccc
Confidence            999999853                       235678999999999999999999996533211 000001111111  


Q ss_pred             -CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          537 -NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       537 -~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                       ........++..+.+|+.+||+.|  |..|||+.++++.
T Consensus       251 ~~~~~~~~~~~~~~~~li~~~L~~d--P~~Rpt~~ell~h  288 (336)
T 3fhr_A          251 GFPNPEWSEVSEDAKQLIRLLLKTD--PTERLTITQFMNH  288 (336)
T ss_dssp             CCCTTTSTTCCHHHHHHHHHHSCSS--GGGSCCHHHHHHS
T ss_pred             ccCchhhccCCHHHHHHHHHHCCCC--hhHCcCHHHHhcC
Confidence             111222467889999999999999  8899999999874

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=2.8e-34  Score=322.66  Aligned_cols=232  Identities=16%  Similarity=0.183  Sum_probs=178.6

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceec-cc--ccceeEEEeec
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMG-CC--SELKCIVFEYM  410 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g-~~--~~~~~LV~Ey~  410 (683)
                      ++|. ..+++|.|+||.||+|.+  +|..||||++........+..|+.++..++|++.+..+. ++  .+..+|||||+
T Consensus         7 ~~y~-i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~~   85 (483)
T 3sv0_A            7 NKFR-LGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDLL   85 (483)
T ss_dssp             TTEE-CCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSSCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEECC
T ss_pred             CcEE-EEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccccHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEECC
Confidence            3443 346778999999999997  589999999875555567899999999998755444443 33  33779999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccc---cCCCcEEEecCCC
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL---DRNLVAKISGLGL  487 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILl---d~~~~~KL~DFGl  487 (683)
                       +++|.+++..         ....+++..++.|+.||+.||.|||+   .+||||||||+||||   +.++.+||+|||+
T Consensus        86 -g~sL~~ll~~---------~~~~l~~~~~~~i~~qi~~aL~yLH~---~gIvHrDIKP~NILl~~~~~~~~vkL~DFGl  152 (483)
T 3sv0_A           86 -GPSLEDLFNF---------CSRKLSLKTVLMLADQMINRVEFVHS---KSFLHRDIKPDNFLMGLGRRANQVYIIDFGL  152 (483)
T ss_dssp             -CCBHHHHHHH---------TTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECCGGGTTCEEECCCTT
T ss_pred             -CCCHHHHHHh---------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccCcceEEEecCCCCCeEEEEeCCc
Confidence             8999999952         24569999999999999999999999   679999999999999   6889999999999


Q ss_pred             ccc--------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHH--hhhhHHHHHHH
Q 005680          488 NIC--------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKA--MALDQTTLMQV  533 (683)
Q Consensus       488 a~~--------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~--~~~~~~~~~~i  533 (683)
                      ++.                                ..++.++||||||||||+|++|+.||......  ...........
T Consensus       153 a~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~  232 (483)
T 3sv0_A          153 AKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKK  232 (483)
T ss_dssp             CEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHH
T ss_pred             ceeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhcc
Confidence            842                                23577899999999999999999999642210  00000011111


Q ss_pred             hcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          534 LDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       534 ld~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      +.......+..++.++.+|+..||+.|  |..||++.+|++.|+.+....
T Consensus       233 ~~~~~~~l~~~~p~~l~~li~~cl~~d--P~~RPs~~el~~~L~~l~~~~  280 (483)
T 3sv0_A          233 VATSIEALCRGYPTEFASYFHYCRSLR--FDDKPDYSYLKRLFRDLFIRE  280 (483)
T ss_dssp             HHSCHHHHHTTSCHHHHHHHHHHHTCC--TTCCCCHHHHHHHHHHHHHHT
T ss_pred             ccccHHHHhcCCcHHHHHHHHHHhcCC--hhhCcCHHHHHHHHHHHHHHc
Confidence            111111112345788999999999999  789999999999999997654

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=6e-34  Score=308.33  Aligned_cols=221  Identities=19%  Similarity=0.238  Sum_probs=170.0

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc--------
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--------  401 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--------  401 (683)
                      ++|.. .+.+|.|+||.||+|..  +|..||||++....    ....+.+|+.+++.++|||||++++++..        
T Consensus        25 ~~y~~-~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~  103 (371)
T 2xrw_A           25 KRYQN-LKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ  103 (371)
T ss_dssp             TTEEE-EEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred             hheeE-eeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence            34433 46678999999999998  68999999987322    23568899999999999999999999854        


Q ss_pred             ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEE
Q 005680          402 LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAK  481 (683)
Q Consensus       402 ~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~K  481 (683)
                      ..|+||||++ |+|.+++.            ..+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+|
T Consensus       104 ~~~lv~e~~~-~~l~~~~~------------~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~NIl~~~~~~~k  167 (371)
T 2xrw_A          104 DVYIVMELMD-ANLCQVIQ------------MELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLK  167 (371)
T ss_dssp             EEEEEEECCS-EEHHHHHH------------SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEE
T ss_pred             ceEEEEEcCC-CCHHHHHh------------hccCHHHHHHHHHHHHHHHHHHHH---CCeecccCCHHHEEEcCCCCEE
Confidence            4699999997 57888772            248899999999999999999999   6799999999999999999999


Q ss_pred             EecCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh-----------
Q 005680          482 ISGLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD-----------  526 (683)
Q Consensus       482 L~DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~-----------  526 (683)
                      |+|||+++.                        ..++.++|||||||++|+|++|++||..........           
T Consensus       168 l~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~  247 (371)
T 2xrw_A          168 ILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCP  247 (371)
T ss_dssp             ECCCCC----------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHC-CCCCCH
T ss_pred             EEEeecccccccccccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCH
Confidence            999999853                        247889999999999999999999996432210000           


Q ss_pred             ------HHHHHHHhcCCC--C-----------------CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          527 ------QTTLMQVLDGNA--G-----------------IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       527 ------~~~~~~ild~~~--~-----------------~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                            ............  .                 ..+...+..+.+|+.+||..|  |.+|||+.++++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~d--P~~R~t~~e~l~h  319 (371)
T 2xrw_A          248 EFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVID--ASKRISVDEALQH  319 (371)
T ss_dssp             HHHTTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSS--GGGSCCHHHHHHS
T ss_pred             HHHHHhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCC--hhhCCCHHHHhCC
Confidence                  000000010000  0                 001123778999999999999  8899999999874

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=2.8e-34  Score=301.11  Aligned_cols=218  Identities=19%  Similarity=0.235  Sum_probs=165.9

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcCCCC--CHHHHHHHHHHHHhcCCCCccceecccc----------------
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL--SEEDFQAKVSFLTAVRHPHLVAVMGCCS----------------  400 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~--~~~~~~~Ev~iL~~l~HpnIV~l~g~~~----------------  400 (683)
                      ..+.+|.|+||.||+|..  +|+.||||++....  ....+.+|+.++++++||||+++++++.                
T Consensus        15 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~   94 (320)
T 2i6l_A           15 DLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTEL   94 (320)
T ss_dssp             EEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----CCSC
T ss_pred             EEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccccccccccc
Confidence            346778999999999998  48999999986332  3367889999999999999999998762                


Q ss_pred             cceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccccc-CCCc
Q 005680          401 ELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD-RNLV  479 (683)
Q Consensus       401 ~~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld-~~~~  479 (683)
                      ...++||||++ |+|.+++.           ...+++..+..++.||+.||.|||+   .+|+||||||+|||++ .++.
T Consensus        95 ~~~~lv~e~~~-~~L~~~~~-----------~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~  159 (320)
T 2i6l_A           95 NSVYIVQEYME-TDLANVLE-----------QGPLLEEHARLFMYQLLRGLKYIHS---ANVLHRDLKPANLFINTEDLV  159 (320)
T ss_dssp             SEEEEEEECCS-EEHHHHHT-----------TCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEEETTTTE
T ss_pred             CceeEEeeccC-CCHHHHhh-----------cCCccHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEcCCCCe
Confidence            25789999998 69999983           3468999999999999999999999   6799999999999997 5679


Q ss_pred             EEEecCCCccc-----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh----
Q 005680          480 AKISGLGLNIC-----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD----  526 (683)
Q Consensus       480 ~KL~DFGla~~-----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~----  526 (683)
                      +||+|||++..                             ..++.++|||||||++|+|+||++||..........    
T Consensus       160 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~  239 (320)
T 2i6l_A          160 LKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILE  239 (320)
T ss_dssp             EEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             EEEccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence            99999998752                             246778999999999999999999996432210000    


Q ss_pred             ------HHHHHHHhc---------CCCCC-----CChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          527 ------QTTLMQVLD---------GNAGI-----WPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       527 ------~~~~~~ild---------~~~~~-----~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                            ......+..         .....     .+..++..+.+|+.+||+.|  |.+|||+.++++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~Rpt~~ell~h  306 (320)
T 2i6l_A          240 SIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFS--PMDRLTAEEALSH  306 (320)
T ss_dssp             HSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSS--GGGSCCHHHHHTS
T ss_pred             hcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCC--ccccCCHHHHhCC
Confidence                  000000000         00011     12346789999999999999  8899999999763

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=2.6e-34  Score=316.90  Aligned_cols=219  Identities=17%  Similarity=0.192  Sum_probs=169.4

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccccc--------ceeEEEeec
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--------LKCIVFEYM  410 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--------~~~LV~Ey~  410 (683)
                      ..+++|+|+||.||+|.+  +|..||||++....  ..+.+|+.+|+.++|||||+++++|..        ..++||||+
T Consensus        58 ~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~  135 (420)
T 1j1b_A           58 DTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK--RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYV  135 (420)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT--TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEEEECC
T ss_pred             eeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc--hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEeehhcc
Confidence            346789999999999998  58999999986332  234579999999999999999998732        367999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC-CcEEEecCCCcc
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN-LVAKISGLGLNI  489 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~-~~~KL~DFGla~  489 (683)
                      ++ +|.+.+....      .....+++..+..|+.||+.||.|||+   .+|+||||||+||||+.+ +.+||+|||+++
T Consensus       136 ~~-~l~~~~~~~~------~~~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~  205 (420)
T 1j1b_A          136 PE-TVYRVARHYS------RAKQTLPVIYVKLYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAK  205 (420)
T ss_dssp             CE-EHHHHHHHHH------HTTCCCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             cc-cHHHHHHHHh------hccCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChhhEEEeCCCCeEEeccchhhh
Confidence            85 6776664321      245679999999999999999999999   679999999999999965 678999999985


Q ss_pred             c-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh----------HHHHHHHh
Q 005680          490 C-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD----------QTTLMQVL  534 (683)
Q Consensus       490 ~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~----------~~~~~~il  534 (683)
                      .                         ..++.++||||||||+|||++|++||..........          ...+... 
T Consensus       206 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~~~-  284 (420)
T 1j1b_A          206 QLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREM-  284 (420)
T ss_dssp             ECCTTCCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHHHH-
T ss_pred             hcccCCCceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhh-
Confidence            2                         247889999999999999999999996432210000          0111111 


Q ss_pred             cCCC--CC------------CChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          535 DGNA--GI------------WPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       535 d~~~--~~------------~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .+..  ..            ++..+++++.+|+.+||..|  |..|||+.+++.
T Consensus       285 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~d--P~~R~t~~e~l~  336 (420)
T 1j1b_A          285 NPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYT--PTARLTPLEACA  336 (420)
T ss_dssp             CSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSS--GGGSCCHHHHHT
T ss_pred             ChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCC--hhHCCCHHHHhC
Confidence            1100  01            22356789999999999999  889999999875

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=4.2e-34  Score=301.85  Aligned_cols=218  Identities=19%  Similarity=0.217  Sum_probs=171.7

Q ss_pred             cccccccCCceEEEEEEE---CCeeEEEEEcCCC-CCHHHHHHHHHHHHhcCCCC------ccceeccccc--ceeEEEe
Q 005680          341 RFRLKCAGDWTNVYRGRL---NHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPH------LVAVMGCCSE--LKCIVFE  408 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~---~g~~VAvK~l~~~-~~~~~~~~Ev~iL~~l~Hpn------IV~l~g~~~~--~~~LV~E  408 (683)
                      ..+.+|.|+||.||+|..   +|..||||++... .....+.+|+.++..++|+|      |+++++++.+  ..+||||
T Consensus        18 ~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~lv~e   97 (339)
T 1z57_A           18 IVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFE   97 (339)
T ss_dssp             EEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEEEEEEE
T ss_pred             EEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCCchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcEEEEEc
Confidence            345678999999999987   5799999999733 23467889999999997654      8999999865  7899999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC------------
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR------------  476 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~------------  476 (683)
                      |+ +++|.+++...        ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.            
T Consensus        98 ~~-~~~l~~~l~~~--------~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~  165 (339)
T 1z57_A           98 LL-GLSTYDFIKEN--------GFLPFRLDHIRKMAYQICKSVNFLHS---NKLTHTDLKPENILFVQSDYTEAYNPKIK  165 (339)
T ss_dssp             CC-CCBHHHHHHHT--------TTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESCCCEEEEEC----
T ss_pred             CC-CCCHHHHHHhc--------CCCCCcHHHHHHHHHHHHHHHHHHHH---CCCcCCCCCHHHEEEeccccccccCCccc
Confidence            99 89999999533        23468999999999999999999999   67999999999999987            


Q ss_pred             -------CCcEEEecCCCccc----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhH
Q 005680          477 -------NLVAKISGLGLNIC----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQ  527 (683)
Q Consensus       477 -------~~~~KL~DFGla~~----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~  527 (683)
                             ++.+||+|||++..                      ..++.++|||||||++|+|++|.+||........  .
T Consensus       166 ~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~--~  243 (339)
T 1z57_A          166 RDERTLINPDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEH--L  243 (339)
T ss_dssp             CEEEEESCCCEEECCCSSCEETTSCCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHH--H
T ss_pred             cccccccCCCceEeeCcccccCccccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHHH--H
Confidence                   67899999999853                      3578899999999999999999999964222100  0


Q ss_pred             HHHHHHhcC----------------------------------------CCCCCChhhHHHHHHHHHHhhhcCCCccccc
Q 005680          528 TTLMQVLDG----------------------------------------NAGIWPLDLAEELAGIALKCLSADQDANRDL  567 (683)
Q Consensus       528 ~~~~~ild~----------------------------------------~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RP  567 (683)
                      ..+..+..+                                        .....+...++.+.+|+.+||+.|  |.+||
T Consensus       244 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d--P~~Rp  321 (339)
T 1z57_A          244 AMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYD--PAKRI  321 (339)
T ss_dssp             HHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSS--TTTSC
T ss_pred             HHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcC--ccccc
Confidence            001111100                                        001123356788999999999999  88999


Q ss_pred             cHHHHHH
Q 005680          568 RIAGVMK  574 (683)
Q Consensus       568 s~~eVl~  574 (683)
                      |+.++++
T Consensus       322 t~~ell~  328 (339)
T 1z57_A          322 TLREALK  328 (339)
T ss_dssp             CHHHHTT
T ss_pred             CHHHHhc
Confidence            9999875

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=2.8e-34  Score=311.35  Aligned_cols=222  Identities=18%  Similarity=0.253  Sum_probs=162.4

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc--------
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--------  401 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--------  401 (683)
                      ++|. ..+.+|+|+||.||+|..  +|..||||++....    ....+.+|+.+|+.++||||+++++++..        
T Consensus        29 ~~y~-~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~  107 (367)
T 2fst_X           29 ERYQ-NLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN  107 (367)
T ss_dssp             TTEE-EEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred             CceE-EeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence            4443 346778999999999987  68999999997332    23578899999999999999999998843        


Q ss_pred             ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEE
Q 005680          402 LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAK  481 (683)
Q Consensus       402 ~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~K  481 (683)
                      ..|+||||+ +++|.+++.           ...+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+|
T Consensus       108 ~~~lv~e~~-~~~L~~~~~-----------~~~l~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~~~k  172 (367)
T 2fst_X          108 DVYLVTHLM-GADLNNIVK-----------CQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELK  172 (367)
T ss_dssp             CCEEEEECC-CEECC----------------CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEE
T ss_pred             eEEEEeccc-CCCHHHHHh-----------cCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHhhEEECCCCCEE
Confidence            469999999 689999883           2469999999999999999999999   6799999999999999999999


Q ss_pred             EecCCCccc-----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh------------
Q 005680          482 ISGLGLNIC-----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD------------  526 (683)
Q Consensus       482 L~DFGla~~-----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~------------  526 (683)
                      |+|||+++.                       ..++.++|||||||++|+|++|++||..........            
T Consensus       173 L~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~  252 (367)
T 2fst_X          173 ILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAE  252 (367)
T ss_dssp             ECC---------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHH
T ss_pred             EeeccccccccccCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHH
Confidence            999999853                       247889999999999999999999996432210000            


Q ss_pred             ------HHHHHHHhcCC--CCCC-----ChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          527 ------QTTLMQVLDGN--AGIW-----PLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       527 ------~~~~~~ild~~--~~~~-----p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                            .......+...  ....     ....++.+.+|+.+||..|  |..|||+.+++..
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~d--P~~R~t~~e~L~h  312 (367)
T 2fst_X          253 LLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLD--SDKRITAAQALAH  312 (367)
T ss_dssp             HHTTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSS--GGGSCCHHHHHTS
T ss_pred             HHHHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCC--cccCcCHHHHhcC
Confidence                  00011111110  0111     1235678999999999999  8899999988753

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=9.5e-34  Score=313.44  Aligned_cols=165  Identities=21%  Similarity=0.288  Sum_probs=142.0

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc-------c
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE-------L  402 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-------~  402 (683)
                      ++|. ..+++|+|+||.||+|.+  +|..||||++....    ....+.+|+.+|+.++|||||++++++..       .
T Consensus        26 ~~y~-~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  104 (432)
T 3n9x_A           26 DNYI-IKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE  104 (432)
T ss_dssp             TTEE-EEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             CCEE-EEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence            4454 346778999999999998  68999999997322    23578899999999999999999999854       4


Q ss_pred             eeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEE
Q 005680          403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKI  482 (683)
Q Consensus       403 ~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL  482 (683)
                      .||||||+. |+|.+++          .....+++..+..|+.||+.||.|||+   .+|+||||||+||||+.++.+||
T Consensus       105 ~~lv~e~~~-~~L~~~~----------~~~~~l~~~~~~~i~~qil~aL~~LH~---~givHrDlkp~NILl~~~~~~kL  170 (432)
T 3n9x_A          105 LYIVLEIAD-SDLKKLF----------KTPIFLTEEHIKTILYNLLLGENFIHE---SGIIHRDLKPANCLLNQDCSVKV  170 (432)
T ss_dssp             EEEEEECCS-EEHHHHH----------HSSCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEE
T ss_pred             EEEEEecCC-cCHHHHH----------hccCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHeEECCCCCEEE
Confidence            799999996 6999999          345679999999999999999999999   67999999999999999999999


Q ss_pred             ecCCCccc------------------------------------------------cCCCcccccccHHHHHHHHhhCCC
Q 005680          483 SGLGLNIC------------------------------------------------DQLNVRSDIRAFGTLLLHLLTGRN  514 (683)
Q Consensus       483 ~DFGla~~------------------------------------------------~~~t~ksDVwSlGviL~eLltG~~  514 (683)
                      +|||+|+.                                                ..++.++||||||||+|||++|..
T Consensus       171 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~  250 (432)
T 3n9x_A          171 CDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQ  250 (432)
T ss_dssp             CCCTTCEEC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCT
T ss_pred             ccCCCcccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhccc
Confidence            99998741                                                237789999999999999998544


Q ss_pred             C
Q 005680          515 W  515 (683)
Q Consensus       515 P  515 (683)
                      |
T Consensus       251 p  251 (432)
T 3n9x_A          251 S  251 (432)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=4.9e-34  Score=315.68  Aligned_cols=167  Identities=21%  Similarity=0.299  Sum_probs=143.7

Q ss_pred             ccccccccCCceEEEEEEE--CCeeEEEEEcCCCC-CHHHHHHHHHHHHhc------CCCCccceeccccc--ceeEEEe
Q 005680          340 ERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-SEEDFQAKVSFLTAV------RHPHLVAVMGCCSE--LKCIVFE  408 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-~~~~~~~Ev~iL~~l------~HpnIV~l~g~~~~--~~~LV~E  408 (683)
                      ...+++|+|+||.||+|..  ++..||||++.... ....+.+|+.++..+      .|+||+.+++++..  ..+||||
T Consensus       100 ~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv~e  179 (429)
T 3kvw_A          100 EVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFE  179 (429)
T ss_dssp             EEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEEEEEEC
T ss_pred             EEEEEcccCccEEEEEEEECCCCcEEEEEEECCccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeEEEEEe
Confidence            3346788999999999998  58999999997432 235678899998887      57799999999865  7899999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc--EEEecCC
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV--AKISGLG  486 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~--~KL~DFG  486 (683)
                      |+. |+|.+++...        ....+++..+..|+.||+.||.|||+   .+|+||||||+||||+.++.  +||+|||
T Consensus       180 ~~~-~~L~~~l~~~--------~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlKp~NILl~~~~~~~vkL~DFG  247 (429)
T 3kvw_A          180 LLS-MNLYELIKKN--------KFQGFSLPLVRKFAHSILQCLDALHK---NRIIHCDLKPENILLKQQGRSGIKVIDFG  247 (429)
T ss_dssp             CCC-CBHHHHHHHT--------TTCCCCHHHHHHHHHHHHHHHHHHHH---HTEECSCCSGGGEEESSTTSCCEEECCCT
T ss_pred             ccC-CCHHHHHHhc--------cCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEEccCCCcceEEeecc
Confidence            996 6999998533        33459999999999999999999999   67999999999999999987  9999999


Q ss_pred             Cccc----------------------cCCCcccccccHHHHHHHHhhCCCCchh
Q 005680          487 LNIC----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGL  518 (683)
Q Consensus       487 la~~----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~  518 (683)
                      ++..                      ..++.++|||||||++|+|+||.+||..
T Consensus       248 ~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~  301 (429)
T 3kvw_A          248 SSCYEHQRVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPG  301 (429)
T ss_dssp             TCEETTCCCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             cceecCCcccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCC
Confidence            9843                      3578999999999999999999999964

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=6e-34  Score=304.14  Aligned_cols=221  Identities=16%  Similarity=0.162  Sum_probs=173.2

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc-------ce
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE-------LK  403 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-------~~  403 (683)
                      ++|.. .+.+|+|+||.||+|..  +|..||||++.....   ...+.+|+.++++++||||+++++++..       ..
T Consensus        11 ~~y~~-~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   89 (353)
T 2b9h_A           11 SDFQL-KSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV   89 (353)
T ss_dssp             TTEEE-EEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred             cceEE-eeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence            45544 35678999999999998  589999999974332   3567899999999999999999998743       57


Q ss_pred             eEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEe
Q 005680          404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKIS  483 (683)
Q Consensus       404 ~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~  483 (683)
                      ++||||+. |+|.+++.           ...+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+
T Consensus        90 ~lv~e~~~-~~L~~~~~-----------~~~~~~~~~~~~~~qi~~~L~~LH~---~~ivH~Dlkp~Nil~~~~~~~kl~  154 (353)
T 2b9h_A           90 YIIQELMQ-TDLHRVIS-----------TQMLSDDHIQYFIYQTLRAVKVLHG---SNVIHRDLKPSNLLINSNCDLKVC  154 (353)
T ss_dssp             EEEECCCS-EEHHHHHH-----------HCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEEC
T ss_pred             EEEEeccC-ccHHHHHh-----------hcCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEEcCCCcEEEE
Confidence            99999997 68999883           2468999999999999999999999   679999999999999999999999


Q ss_pred             cCCCccc------------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh-
Q 005680          484 GLGLNIC------------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD-  526 (683)
Q Consensus       484 DFGla~~------------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~-  526 (683)
                      |||++..                                    ..++.++|||||||++|+|++|++||.......... 
T Consensus       155 Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~  234 (353)
T 2b9h_A          155 DFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLL  234 (353)
T ss_dssp             CCTTCEECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHH
T ss_pred             ecccccccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHH
Confidence            9998742                                    236778999999999999999999996432210000 


Q ss_pred             ------------------HHHHHHHhcCCC--C-----CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          527 ------------------QTTLMQVLDGNA--G-----IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       527 ------------------~~~~~~ild~~~--~-----~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                                        .......+....  .     ..++.+++.+.+|+.+||..|  |..|||+.++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~Rpt~~ell~  305 (353)
T 2b9h_A          235 IFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFD--PAKRITAKEALE  305 (353)
T ss_dssp             HHHHHCCCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSS--GGGSCCHHHHHT
T ss_pred             HHHHhCCCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcC--cccCCCHHHHhc
Confidence                              000011111100  0     011356788999999999999  889999999875

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=5.1e-34  Score=311.87  Aligned_cols=221  Identities=16%  Similarity=0.224  Sum_probs=167.4

Q ss_pred             ccccccccCCceEEEEEEE-CCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccccc--------ceeEEEeec
Q 005680          340 ERFRLKCAGDWTNVYRGRL-NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--------LKCIVFEYM  410 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~-~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--------~~~LV~Ey~  410 (683)
                      ...+++|.|+||.||+|.+ .+..||+|++....  ....+|+.+++.++|||||+++++|..        ..++||||+
T Consensus        43 ~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~--~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~e~~  120 (394)
T 4e7w_A           43 TNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDK--RFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYV  120 (394)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTEEEEEEEEECCT--TSCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEEEECC
T ss_pred             EEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCc--chHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEEeecc
Confidence            3346789999999999998 55669999886322  223479999999999999999999833        378999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccccc-CCCcEEEecCCCcc
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD-RNLVAKISGLGLNI  489 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld-~~~~~KL~DFGla~  489 (683)
                      +++ |.+.+....      .....+++..+..|+.||+.||.|||+   .+|+||||||+||||+ .++.+||+|||+|+
T Consensus       121 ~~~-l~~~~~~~~------~~~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~  190 (394)
T 4e7w_A          121 PET-VYRASRHYA------KLKQTMPMLLIKLYMYQLLRSLAYIHS---IGICHRDIKPQNLLLDPPSGVLKLIDFGSAK  190 (394)
T ss_dssp             SEE-HHHHHHHHH------HTTSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             Ccc-HHHHHHHHH------hhcCCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCCHHHEEEcCCCCcEEEeeCCCcc
Confidence            864 444432211      245679999999999999999999999   6799999999999999 79999999999984


Q ss_pred             c-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh----------HHHHHHHh
Q 005680          490 C-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD----------QTTLMQVL  534 (683)
Q Consensus       490 ~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~----------~~~~~~il  534 (683)
                      .                         ..++.++|||||||++|+|++|++||..........          ...+....
T Consensus       191 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~  270 (394)
T 4e7w_A          191 ILIAGEPNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIKTMN  270 (394)
T ss_dssp             ECCTTCCCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHC
T ss_pred             cccCCCCCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhC
Confidence            3                         247889999999999999999999996432210000          00000000


Q ss_pred             ----cCCCC---------CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          535 ----DGNAG---------IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       535 ----d~~~~---------~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                          ....+         .++..+++++.+|+.+||+.|  |..|||+.+++.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~R~t~~e~l~  321 (394)
T 4e7w_A          271 PNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYT--PSARLTAIEALC  321 (394)
T ss_dssp             GGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSS--GGGSCCHHHHHT
T ss_pred             hhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCC--hhhCCCHHHHhc
Confidence                00000         122346789999999999999  889999998875

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=6.6e-34  Score=305.77  Aligned_cols=223  Identities=21%  Similarity=0.338  Sum_probs=173.4

Q ss_pred             CccccccccccCCceEEEEEEE--CCeeEEEEEcCCC-CCHHHHHHHHHHHHhcC-----------CCCccceeccccc-
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG-LSEEDFQAKVSFLTAVR-----------HPHLVAVMGCCSE-  401 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-~~~~~~~~Ev~iL~~l~-----------HpnIV~l~g~~~~-  401 (683)
                      +|.. .+.+|+|+||.||+|..  +|+.||||++... .....+.+|+.++.++.           ||||+++++++.. 
T Consensus        20 ~y~~-~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~   98 (373)
T 1q8y_A           20 RYIL-VRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHK   98 (373)
T ss_dssp             TEEE-EEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEE
T ss_pred             eEEE-EEeeeecCCeEEEEEEecCCCcEEEEEEecCCccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhcc
Confidence            4433 46778999999999997  6899999999733 23467889999999886           8999999999854 


Q ss_pred             -----ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCC-cEEeccCCCCccccc
Q 005680          402 -----LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPR-PIVHGSLTPSSILLD  475 (683)
Q Consensus       402 -----~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~-~IiHrDLKP~NILld  475 (683)
                           ..++||||+ +++|.+++...        ....+++..+..|+.||+.||.|||+   . +|+||||||+||||+
T Consensus        99 ~~~~~~~~lv~e~~-~~~L~~~~~~~--------~~~~~~~~~~~~i~~qi~~aL~~lH~---~~~ivH~Dikp~NIll~  166 (373)
T 1q8y_A           99 GPNGVHVVMVFEVL-GENLLALIKKY--------EHRGIPLIYVKQISKQLLLGLDYMHR---RCGIIHTDIKPENVLME  166 (373)
T ss_dssp             ETTEEEEEEEECCC-CEEHHHHHHHT--------TTSCCCHHHHHHHHHHHHHHHHHHHH---TTCEECSCCSGGGEEEE
T ss_pred             CCCCceEEEEEecC-CCCHHHHHHHh--------hccCCcHHHHHHHHHHHHHHHHHHHh---cCCEEecCCChHHeEEe
Confidence                 578999999 89999999543        23459999999999999999999999   5 799999999999994


Q ss_pred             ------CCCcEEEecCCCccc----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHh-hhh
Q 005680          476 ------RNLVAKISGLGLNIC----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAM-ALD  526 (683)
Q Consensus       476 ------~~~~~KL~DFGla~~----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~-~~~  526 (683)
                            ..+.+||+|||++..                      ..++.++|||||||++|+|+||++||....... ...
T Consensus       167 ~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~  246 (373)
T 1q8y_A          167 IVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKD  246 (373)
T ss_dssp             EEETTTTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CH
T ss_pred             ccCCCcCcceEEEcccccccccCCCCCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCCh
Confidence                  445899999999853                      347889999999999999999999997432110 000


Q ss_pred             HHHHHHHhc-----------------------------------------CCCCCCChhhHHHHHHHHHHhhhcCCCccc
Q 005680          527 QTTLMQVLD-----------------------------------------GNAGIWPLDLAEELAGIALKCLSADQDANR  565 (683)
Q Consensus       527 ~~~~~~ild-----------------------------------------~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~  565 (683)
                      ...+..+..                                         .....++..++..+.+||.+||+.|  |..
T Consensus       247 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~  324 (373)
T 1q8y_A          247 DDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLD--PRK  324 (373)
T ss_dssp             HHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSS--TTT
T ss_pred             HHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccC--ccc
Confidence            111111110                                         0112355678899999999999999  889


Q ss_pred             cccHHHHHH
Q 005680          566 DLRIAGVMK  574 (683)
Q Consensus       566 RPs~~eVl~  574 (683)
                      |||+.++++
T Consensus       325 Rpt~~ell~  333 (373)
T 1q8y_A          325 RADAGGLVN  333 (373)
T ss_dssp             CBCHHHHHT
T ss_pred             cCCHHHHhh
Confidence            999999875

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=2e-34  Score=303.43  Aligned_cols=232  Identities=16%  Similarity=0.249  Sum_probs=181.7

Q ss_pred             cccccCHHHHHHhhcCccccccccccCCceEEEEEEE-CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcC--CCCccc
Q 005680          322 AFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRL-NHASVAIKTLNNGL----SEEDFQAKVSFLTAVR--HPHLVA  394 (683)
Q Consensus       322 ~~~~~s~~ei~~at~~F~~~~~liG~G~fG~Vykg~~-~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~--HpnIV~  394 (683)
                      +.+.+++..+....++|... +.+|.|+||.||+|.. +|..||||++....    ....+.+|+.++.+++  ||||++
T Consensus        14 ~~~~~~~~~~~~~~~~y~~~-~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~   92 (313)
T 3cek_A           14 GTENLYFQSMSVKGRIYSIL-KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIR   92 (313)
T ss_dssp             ------CCEEEETTEEEEEE-EEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCC
T ss_pred             CCCCCCeeeeeeccceEEEE-EEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEE
Confidence            33445555555555556544 5678999999999998 68899999986322    2367889999999997  599999


Q ss_pred             eeccccc--ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcc
Q 005680          395 VMGCCSE--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSI  472 (683)
Q Consensus       395 l~g~~~~--~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NI  472 (683)
                      +++++.+  ..++||| +.+++|.+++.          ....+++..+..|+.||+.||.|||+   .+|+||||||+||
T Consensus        93 ~~~~~~~~~~~~lv~e-~~~~~L~~~l~----------~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NI  158 (313)
T 3cek_A           93 LYDYEITDQYIYMVME-CGNIDLNSWLK----------KKKSIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANF  158 (313)
T ss_dssp             EEEEEECSSEEEEEEC-CCSEEHHHHHH----------HCSSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGE
T ss_pred             EEEEeecCCEEEEEEe-cCCCcHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCcccE
Confidence            9999865  7789999 56789999994          44578999999999999999999999   6799999999999


Q ss_pred             cccCCCcEEEecCCCccc--------------------------------------cCCCcccccccHHHHHHHHhhCCC
Q 005680          473 LLDRNLVAKISGLGLNIC--------------------------------------DQLNVRSDIRAFGTLLLHLLTGRN  514 (683)
Q Consensus       473 Lld~~~~~KL~DFGla~~--------------------------------------~~~t~ksDVwSlGviL~eLltG~~  514 (683)
                      |++ ++.+||+|||++..                                      ..++.++|||||||++|+|++|+.
T Consensus       159 l~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~  237 (313)
T 3cek_A          159 LIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKT  237 (313)
T ss_dssp             EEE-TTEEEECCCSSSCC--------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSC
T ss_pred             EEE-CCeEEEeeccccccccCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCC
Confidence            996 48999999998742                                      135678999999999999999999


Q ss_pred             CchhhHHHhhhhHHHHHHHhcC-CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          515 WAGLVEKAMALDQTTLMQVLDG-NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       515 Pf~~~~~~~~~~~~~~~~ild~-~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ||.....    ....+..++++ ....+|...+..+.+|+.+||+.|  |..|||+.++++.
T Consensus       238 pf~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d--p~~Rps~~ell~h  293 (313)
T 3cek_A          238 PFQQIIN----QISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRD--PKQRISIPELLAH  293 (313)
T ss_dssp             TTTTCCS----HHHHHHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSS--TTTSCCHHHHHTS
T ss_pred             chhhHHH----HHHHHHHHHhcccccCCcccchHHHHHHHHHHccCC--cccCcCHHHHhcC
Confidence            9964221    11223334443 334556667889999999999999  8899999999865

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=1.3e-33  Score=297.89  Aligned_cols=221  Identities=20%  Similarity=0.293  Sum_probs=174.3

Q ss_pred             hhcCccccccccccCCceEEEEEEE---CCeeEEEEEcCC----CCCHHHHHHHHHHHHhc---CCCCccceecccc---
Q 005680          334 ATEDFSERFRLKCAGDWTNVYRGRL---NHASVAIKTLNN----GLSEEDFQAKVSFLTAV---RHPHLVAVMGCCS---  400 (683)
Q Consensus       334 at~~F~~~~~liG~G~fG~Vykg~~---~g~~VAvK~l~~----~~~~~~~~~Ev~iL~~l---~HpnIV~l~g~~~---  400 (683)
                      +.++|... +.+|.|+||.||+|..   +|..||||++..    ......+.+|+.++..+   +||||++++++|.   
T Consensus         9 ~~~~y~~~-~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~   87 (326)
T 1blx_A            9 ADQQYECV-AEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR   87 (326)
T ss_dssp             GGGTEEEE-EEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred             chhceeee-eeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecc
Confidence            34555543 5678999999999997   478999999862    12234677888888777   8999999999985   


Q ss_pred             --c--ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC
Q 005680          401 --E--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR  476 (683)
Q Consensus       401 --~--~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~  476 (683)
                        .  ..++||||++ |+|.+++...        ....+++..+..++.||+.||.|||+   .+|+||||||+|||++.
T Consensus        88 ~~~~~~~~lv~e~~~-~~L~~~l~~~--------~~~~~~~~~~~~~~~qi~~~l~~lH~---~gi~H~dlkp~Nili~~  155 (326)
T 1blx_A           88 TDRETKLTLVFEHVD-QDLTTYLDKV--------PEPGVPTETIKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTS  155 (326)
T ss_dssp             CSSEEEEEEEEECCS-CBHHHHHHHS--------CTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECT
T ss_pred             cCCCceEEEEEecCC-CCHHHHHHhc--------ccCCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCCHHHeEEcC
Confidence              2  6799999998 6999999533        23458999999999999999999999   67999999999999999


Q ss_pred             CCcEEEecCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHH
Q 005680          477 NLVAKISGLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQ  532 (683)
Q Consensus       477 ~~~~KL~DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~  532 (683)
                      ++.+||+|||++..                        ..++.++|||||||++|+|++|++||......     ..+..
T Consensus       156 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-----~~~~~  230 (326)
T 1blx_A          156 SGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDV-----DQLGK  230 (326)
T ss_dssp             TCCEEECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-----HHHHH
T ss_pred             CCCEEEecCcccccccCCCCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHH-----HHHHH
Confidence            99999999999753                        24678999999999999999999999653221     11111


Q ss_pred             Hhc----C----------------------CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          533 VLD----G----------------------NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       533 ild----~----------------------~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ++.    +                      ....++..++..+.+|+.+||..|  |..|||+.+++.
T Consensus       231 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~Rpt~~e~l~  296 (326)
T 1blx_A          231 ILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFN--PAKRISAYSALS  296 (326)
T ss_dssp             HHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSS--TTTSCCHHHHHT
T ss_pred             HHHHcCCCCcccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCC--cccCCCHHHHhc
Confidence            111    0                      001123457789999999999999  889999999874

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=1.9e-33  Score=301.44  Aligned_cols=220  Identities=17%  Similarity=0.233  Sum_probs=173.4

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCC----HHHHHHHHHHHHhcCCCCccceeccccc--------
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLS----EEDFQAKVSFLTAVRHPHLVAVMGCCSE--------  401 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~----~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--------  401 (683)
                      ++|.. .+.+|.|+||.||+|..  +|..||||++.....    ...+.+|+.+++.++||||+++++++.+        
T Consensus        24 ~~y~~-~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~  102 (353)
T 3coi_A           24 KTYVS-PTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  102 (353)
T ss_dssp             TTEEE-EEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred             ceEEE-eeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence            34443 45678999999999998  689999999974322    3568899999999999999999999865        


Q ss_pred             ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEE
Q 005680          402 LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAK  481 (683)
Q Consensus       402 ~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~K  481 (683)
                      ..|+||||+. |+|.+++.            ..+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+|
T Consensus       103 ~~~lv~e~~~-~~l~~~~~------------~~~~~~~~~~i~~qi~~al~~LH~---~~ivH~dlkp~NIl~~~~~~~k  166 (353)
T 3coi_A          103 DFYLVMPFMQ-TDLQKIMG------------LKFSEEKIQYLVYQMLKGLKYIHS---AGVVHRDLKPGNLAVNEDCELK  166 (353)
T ss_dssp             CCEEEEECCS-EEGGGTTT------------SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCCGGGEEECTTCCEE
T ss_pred             eEEEEecccc-CCHHHHhc------------CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEeECCCCcEE
Confidence            2499999997 68888772            248999999999999999999999   6799999999999999999999


Q ss_pred             EecCCCccc-----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh------------
Q 005680          482 ISGLGLNIC-----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD------------  526 (683)
Q Consensus       482 L~DFGla~~-----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~------------  526 (683)
                      |+|||++..                       ..++.++|||||||++|+|++|++||..........            
T Consensus       167 l~Dfg~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~  246 (353)
T 3coi_A          167 ILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTE  246 (353)
T ss_dssp             ECSTTCTTC--------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHH
T ss_pred             EeecccccCCCCCccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHH
Confidence            999999853                       246789999999999999999999996432210000            


Q ss_pred             ------HHHHHHHhcC-------CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          527 ------QTTLMQVLDG-------NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       527 ------~~~~~~ild~-------~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                            .......+..       .....+..+++.+.+|+.+||..|  |..|||+.+++.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--p~~Rpt~~e~l~  305 (353)
T 3coi_A          247 FVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELD--VDKRLTAAQALT  305 (353)
T ss_dssp             HHTTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSC--TTTSCCHHHHHT
T ss_pred             HHHHHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCC--cccCCCHHHHhc
Confidence                  0000011110       111223467889999999999999  889999998875

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=1.5e-33  Score=305.28  Aligned_cols=220  Identities=18%  Similarity=0.235  Sum_probs=171.3

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCC----HHHHHHHHHHHHhcCCCCccceeccccc--c-----
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLS----EEDFQAKVSFLTAVRHPHLVAVMGCCSE--L-----  402 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~----~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~-----  402 (683)
                      ++|.. .+.+|.|+||.||+|.+  +|+.||||++.....    ...+.+|+.+++.++||||+++++++..  .     
T Consensus        42 ~~y~~-~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~  120 (371)
T 4exu_A           42 KTYVS-PTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  120 (371)
T ss_dssp             TTEEE-EEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred             ccEEE-EeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence            34433 45678999999999998  689999999974322    3578899999999999999999999865  2     


Q ss_pred             -eeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEE
Q 005680          403 -KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAK  481 (683)
Q Consensus       403 -~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~K  481 (683)
                       .++||||+. |+|.+++.            ..+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++.+|
T Consensus       121 ~~~lv~e~~~-~~l~~~~~------------~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~k  184 (371)
T 4exu_A          121 DFYLVMPFMQ-TDLQKIMG------------MEFSEEKIQYLVYQMLKGLKYIHS---AGVVHRDLKPGNLAVNEDCELK  184 (371)
T ss_dssp             CCEEEEECCC-EEHHHHTT------------SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEE
T ss_pred             eEEEEEcccc-ccHHHHhh------------cCCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCcCHHHeEECCCCCEE
Confidence             399999997 68887772            238999999999999999999999   6799999999999999999999


Q ss_pred             EecCCCccc-----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhH-----------
Q 005680          482 ISGLGLNIC-----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQ-----------  527 (683)
Q Consensus       482 L~DFGla~~-----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~-----------  527 (683)
                      |+|||+++.                       ..++.++|||||||++|+|+||++||...........           
T Consensus       185 L~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~  264 (371)
T 4exu_A          185 ILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTE  264 (371)
T ss_dssp             ECSTTCC--------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHH
T ss_pred             EEecCcccccccCcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCcHH
Confidence            999999843                       2578899999999999999999999964322100000           


Q ss_pred             -------HHHHHHhcC----CCCC---CChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          528 -------TTLMQVLDG----NAGI---WPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       528 -------~~~~~ild~----~~~~---~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                             .........    ....   .++.+++.+.+|+.+||+.|  |.+|||+.++++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~Rpt~~ell~  323 (371)
T 4exu_A          265 FVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELD--VDKRLTAAQALT  323 (371)
T ss_dssp             HHTTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSC--TTTSCCHHHHHT
T ss_pred             HHHHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCC--hhhcCCHHHHhc
Confidence                   000000000    0000   12345789999999999999  889999998875

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=7.1e-34  Score=298.69  Aligned_cols=213  Identities=19%  Similarity=0.297  Sum_probs=172.0

Q ss_pred             hcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC--------CHHHHHHHHHHHHhc----CCCCccceecccc
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL--------SEEDFQAKVSFLTAV----RHPHLVAVMGCCS  400 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~--------~~~~~~~Ev~iL~~l----~HpnIV~l~g~~~  400 (683)
                      .++|.. .+.+|.|+||.||+|..  +|..||||++....        ....+.+|+.++.++    +||||+++++++.
T Consensus        30 ~~~y~~-~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~  108 (312)
T 2iwi_A           30 EAEYRL-GPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFE  108 (312)
T ss_dssp             ---CEE-EEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC-
T ss_pred             hhceEE-eeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEe
Confidence            445544 46678999999999988  68899999997321        223466799999999    8999999999986


Q ss_pred             c--ceeEEEee-cCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccccc-C
Q 005680          401 E--LKCIVFEY-MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD-R  476 (683)
Q Consensus       401 ~--~~~LV~Ey-~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld-~  476 (683)
                      +  ..++|||| +.+++|.+++.          ....+++..++.++.||+.||.|||+   .+|+||||||+|||++ .
T Consensus       109 ~~~~~~~v~e~~~~~~~L~~~l~----------~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~  175 (312)
T 2iwi_A          109 TQEGFMLVLERPLPAQDLFDYIT----------EKGPLGEGPSRCFFGQVVAAIQHCHS---RGVVHRDIKDENILIDLR  175 (312)
T ss_dssp             ----CEEEEECCSSEEEHHHHHH----------HHCSCCHHHHHHHHHHHHHHHHHHHH---HTEECCCCSGGGEEEETT
T ss_pred             cCCeEEEEEEecCCCCCHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCChhhEEEeCC
Confidence            5  78999999 78999999994          34569999999999999999999999   6799999999999999 8


Q ss_pred             CCcEEEecCCCccc-----------------------cC-CCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHH
Q 005680          477 NLVAKISGLGLNIC-----------------------DQ-LNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQ  532 (683)
Q Consensus       477 ~~~~KL~DFGla~~-----------------------~~-~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~  532 (683)
                      ++.+||+|||++..                       .. .+.++|||||||++|+|++|+.||.....           
T Consensus       176 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-----------  244 (312)
T 2iwi_A          176 RGCAKLIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQE-----------  244 (312)
T ss_dssp             TTEEEECCCSSCEECCSSCBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH-----------
T ss_pred             CCeEEEEEcchhhhcccCcccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChHH-----------
Confidence            89999999999753                       11 24589999999999999999999965322           


Q ss_pred             HhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          533 VLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       533 ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      +.. ....++..++..+.+|+.+||+.|  |..|||+.++++.
T Consensus       245 ~~~-~~~~~~~~~~~~~~~li~~~l~~~--p~~Rps~~e~l~~  284 (312)
T 2iwi_A          245 ILE-AELHFPAHVSPDCCALIRRCLAPK--PSSRPSLEEILLD  284 (312)
T ss_dssp             HHH-TCCCCCTTSCHHHHHHHHHHTCSS--TTTSCCHHHHHHS
T ss_pred             Hhh-hccCCcccCCHHHHHHHHHHccCC--hhhCcCHHHHhcC
Confidence            111 123455677889999999999999  8899999999753

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=4e-34  Score=302.89  Aligned_cols=224  Identities=20%  Similarity=0.251  Sum_probs=172.7

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCC---HHHHHHHHH-HHHhcCCCCccceeccccc--ceeEEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLS---EEDFQAKVS-FLTAVRHPHLVAVMGCCSE--LKCIVF  407 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~---~~~~~~Ev~-iL~~l~HpnIV~l~g~~~~--~~~LV~  407 (683)
                      ++|.. .+.+|.|+||.||+|..  +|+.||||++.....   ...+..|+. +++.++||||+++++++.+  ..++||
T Consensus        22 ~~y~~-~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~  100 (327)
T 3aln_A           22 EDLKD-LGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICM  100 (327)
T ss_dssp             CSEEC--CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHhhe-hheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEE
Confidence            44443 45678999999999998  589999999974432   234556665 6777899999999999865  789999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCC-cEEeccCCCCcccccCCCcEEEecCC
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPR-PIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~-~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      ||++ |+|.+++.....     .....+++..+..++.|++.||.|||+   . +|+||||||+|||++.++.+||+|||
T Consensus       101 e~~~-~~l~~~~~~~~~-----~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~~ivH~dlkp~NIll~~~~~~kl~Dfg  171 (327)
T 3aln_A          101 ELMS-TSFDKFYKYVYS-----VLDDVIPEEILGKITLATVKALNHLKE---NLKIIHRDIKPSNILLDRSGNIKLCDFG  171 (327)
T ss_dssp             CCCS-EEHHHHHHHHHH-----TTCCCCCHHHHHHHHHHHHHHHHHHHH---HHSCCCSCCCGGGEEEETTTEEEECCCS
T ss_pred             eecC-CChHHHHHHHHh-----hhcccCcHHHHHHHHHHHHHHHHHHhc---cCCEeECCCCHHHEEEcCCCCEEEccCC
Confidence            9998 588888743211     135679999999999999999999999   5 79999999999999999999999999


Q ss_pred             Cccc----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCC
Q 005680          487 LNIC----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNA  538 (683)
Q Consensus       487 la~~----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~  538 (683)
                      ++..                            ..++.++|||||||++|+|++|+.||......    ...+..+.....
T Consensus       172 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~----~~~~~~~~~~~~  247 (327)
T 3aln_A          172 ISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSV----FDQLTQVVKGDP  247 (327)
T ss_dssp             SSCC------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-----------CCCCCSCC
T ss_pred             CceecccccccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchH----HHHHHHHhcCCC
Confidence            8843                            12678999999999999999999999642211    111112222222


Q ss_pred             CCC----ChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          539 GIW----PLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       539 ~~~----p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ..+    +..+++.+.+|+.+||..|  |..|||+.++++.
T Consensus       248 ~~~~~~~~~~~~~~l~~li~~~l~~d--p~~Rps~~ell~h  286 (327)
T 3aln_A          248 PQLSNSEEREFSPSFINFVNLCLTKD--ESKRPKYKELLKH  286 (327)
T ss_dssp             CCCCCCSSCCCCHHHHHHHHHHTCSS--GGGSCCHHHHTTS
T ss_pred             CCCCCcccccCCHHHHHHHHHHhhCC--hhhCcCHHHHHhC
Confidence            222    2357889999999999999  8899999999864

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=3.2e-33  Score=303.54  Aligned_cols=174  Identities=25%  Similarity=0.321  Sum_probs=144.4

Q ss_pred             hhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC-CHHHHHHHHHHHHhcC-CCC-----ccceeccccc--c
Q 005680          334 ATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-SEEDFQAKVSFLTAVR-HPH-----LVAVMGCCSE--L  402 (683)
Q Consensus       334 at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-~~~~~~~Ev~iL~~l~-Hpn-----IV~l~g~~~~--~  402 (683)
                      ..++|... +++|+|+||.||+|..  +|+.||||++.... ....+..|+.++..++ |+|     |+.+++++..  .
T Consensus        52 ~~~~y~~~-~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~  130 (382)
T 2vx3_A           52 WMDRYEID-SLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNH  130 (382)
T ss_dssp             ETTTEEEE-EEEEEETTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTE
T ss_pred             eeeeEEEE-EEEeecCCEEEEEEEEcCCCcEEEEEEEeccHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCc
Confidence            34556443 5678999999999998  58999999997432 2456788999998885 554     8999988854  7


Q ss_pred             eeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccccc--CCCcE
Q 005680          403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD--RNLVA  480 (683)
Q Consensus       403 ~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld--~~~~~  480 (683)
                      .||||||++ |+|.+++...        ....+++..+..|+.||+.||.|||++. .+|+||||||+||||+  .++.+
T Consensus       131 ~~lv~e~~~-~~L~~~l~~~--------~~~~~~~~~~~~i~~qi~~al~~lH~~~-~~ivHrDlkp~NIll~~~~~~~~  200 (382)
T 2vx3_A          131 LCLVFEMLS-YNLYDLLRNT--------NFRGVSLNLTRKFAQQMCTALLFLATPE-LSIIHCDLKPENILLCNPKRSAI  200 (382)
T ss_dssp             EEEEEECCC-CBHHHHHHHT--------TTSCCCHHHHHHHHHHHHHHHHHHTSTT-TCEECCCCSGGGEEESSTTSCCE
T ss_pred             eEEEEecCC-CCHHHHHhhc--------CcCCCCHHHHHHHHHHHHHHHHHhccCC-CCEEcCCCCcccEEEecCCCCcE
Confidence            899999996 5999999533        2346999999999999999999999644 6899999999999994  47889


Q ss_pred             EEecCCCccc----------------------cCCCcccccccHHHHHHHHhhCCCCchh
Q 005680          481 KISGLGLNIC----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGL  518 (683)
Q Consensus       481 KL~DFGla~~----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~  518 (683)
                      ||+|||++..                      ..++.++|||||||++|+|+||++||..
T Consensus       201 kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~  260 (382)
T 2vx3_A          201 KIVDFGSSCQLGQRIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSG  260 (382)
T ss_dssp             EECCCTTCEETTCCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             EEEeccCceecccccccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence            9999999843                      3578999999999999999999999964

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=2.7e-33  Score=297.88  Aligned_cols=222  Identities=18%  Similarity=0.239  Sum_probs=170.1

Q ss_pred             cCccccccccccCCceEEEEEEE--CC-eeEEEEEcCCC-CCHHHHHHHHHHHHhcCCCC------ccceeccccc--ce
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NH-ASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPH------LVAVMGCCSE--LK  403 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g-~~VAvK~l~~~-~~~~~~~~Ev~iL~~l~Hpn------IV~l~g~~~~--~~  403 (683)
                      ++|.. .+.+|.|+||.||+|..  ++ ..||||+++.. .....+.+|+.++..++|++      ++.+++++..  ..
T Consensus        19 ~~y~~-~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~   97 (355)
T 2eu9_A           19 ERYEI-VGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHM   97 (355)
T ss_dssp             TTEEE-EEEEEEETTEEEEEEEETTTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTEE
T ss_pred             ccEEE-EEEeeccCCeEEEEEEecCCCceEEEEEEEcccccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCeE
Confidence            34433 45678999999999998  34 78999999743 23467889999999998766      8888888754  78


Q ss_pred             eEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccc---------
Q 005680          404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL---------  474 (683)
Q Consensus       404 ~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILl---------  474 (683)
                      +|||||+ +++|.+++...        ....+++..+..|+.||+.||.|||+   .+|+||||||+|||+         
T Consensus        98 ~lv~e~~-~~~l~~~l~~~--------~~~~~~~~~~~~i~~qi~~~L~~lH~---~~ivH~Dlkp~NIll~~~~~~~~~  165 (355)
T 2eu9_A           98 CIAFELL-GKNTFEFLKEN--------NFQPYPLPHVRHMAYQLCHALRFLHE---NQLTHTDLKPENILFVNSEFETLY  165 (355)
T ss_dssp             EEEEECC-CCBHHHHHHHT--------TTCCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEESCCCEEEEE
T ss_pred             EEEEecc-CCChHHHHHhc--------cCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEecccccccc
Confidence            9999999 57777777432        23569999999999999999999999   679999999999999         


Q ss_pred             ----------cCCCcEEEecCCCccc----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHH
Q 005680          475 ----------DRNLVAKISGLGLNIC----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKA  522 (683)
Q Consensus       475 ----------d~~~~~KL~DFGla~~----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~  522 (683)
                                +.++.+||+|||++..                      ..++.++|||||||++|+|+||.+||......
T Consensus       166 ~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~  245 (355)
T 2eu9_A          166 NEHKSCEEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENR  245 (355)
T ss_dssp             CCC-CCCEEEESCCCEEECCCTTCEETTSCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH
T ss_pred             cccccccccccCCCcEEEeecCccccccccccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHH
Confidence                      5678999999999853                      35788999999999999999999999643221


Q ss_pred             hhhhHHHHHHHhcC----------------------------------------CCCCCChhhHHHHHHHHHHhhhcCCC
Q 005680          523 MALDQTTLMQVLDG----------------------------------------NAGIWPLDLAEELAGIALKCLSADQD  562 (683)
Q Consensus       523 ~~~~~~~~~~ild~----------------------------------------~~~~~p~~~~~~l~~Li~~CL~~dP~  562 (683)
                      ...  ..+..+..+                                        .........+..+.+|+.+||+.|  
T Consensus       246 ~~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d--  321 (355)
T 2eu9_A          246 EHL--VMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFD--  321 (355)
T ss_dssp             HHH--HHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSS--
T ss_pred             HHH--HHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCC--
Confidence            000  000111000                                        000112245678999999999999  


Q ss_pred             ccccccHHHHHH
Q 005680          563 ANRDLRIAGVMK  574 (683)
Q Consensus       563 p~~RPs~~eVl~  574 (683)
                      |.+|||+.++++
T Consensus       322 P~~Rpt~~e~l~  333 (355)
T 2eu9_A          322 PAQRITLAEALL  333 (355)
T ss_dssp             TTTSCCHHHHTT
T ss_pred             hhhCcCHHHHhc
Confidence            889999999874

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=9.2e-34  Score=313.86  Aligned_cols=235  Identities=17%  Similarity=0.218  Sum_probs=172.7

Q ss_pred             CHHHHHHhhcCccccccccccCCceEEEEE-EECCeeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCCccceeccccc--c
Q 005680          327 AAEDIRLATEDFSERFRLKCAGDWTNVYRG-RLNHASVAIKTLNNGLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--L  402 (683)
Q Consensus       327 s~~ei~~at~~F~~~~~liG~G~fG~Vykg-~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~  402 (683)
                      ++.++....+++....+++|.|+||+||.+ ..+|+.||||++... ..+.+.+|+.+|.++ +|||||++++++.+  .
T Consensus         5 ~~p~~~~~l~~~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~-~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~   83 (434)
T 2rio_A            5 NIPNFEQSLKNLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID-FCDIALMEIKLLTESDDHPNVIRYYCSETTDRF   83 (434)
T ss_dssp             ---CCSCSCSSCEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG-GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSE
T ss_pred             cccchhhhhhheeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH-HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCe
Confidence            334444556777777788999999999654 448999999998643 345678999999987 89999999999866  6


Q ss_pred             eeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC-----
Q 005680          403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN-----  477 (683)
Q Consensus       403 ~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~-----  477 (683)
                      .|||||||. |+|.+++.......   ......++..++.|+.||+.||.|||+   .+|+||||||+||||+.+     
T Consensus        84 ~~lv~E~~~-gsL~~~l~~~~~~~---~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDLkp~NILl~~~~~~~~  156 (434)
T 2rio_A           84 LYIALELCN-LNLQDLVESKNVSD---ENLKLQKEYNPISLLRQIASGVAHLHS---LKIIHRDLKPQNILVSTSSRFTA  156 (434)
T ss_dssp             EEEEECCCS-EEHHHHHHTC---------------CCHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEECCHHHHS
T ss_pred             EEEEEecCC-CCHHHHHhccCCCc---hhhhhccchhHHHHHHHHHHHHHHHHH---CCccccCCChHhEEEecCccccc
Confidence            899999996 69999996442100   000112344567899999999999999   679999999999999754     


Q ss_pred             --------CcEEEecCCCccc------------------------------------cCCCcccccccHHHHHHHHhh-C
Q 005680          478 --------LVAKISGLGLNIC------------------------------------DQLNVRSDIRAFGTLLLHLLT-G  512 (683)
Q Consensus       478 --------~~~KL~DFGla~~------------------------------------~~~t~ksDVwSlGviL~eLlt-G  512 (683)
                              +.+||+|||+++.                                    ..++.++|||||||++|+|+| |
T Consensus       157 ~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g  236 (434)
T 2rio_A          157 DQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKG  236 (434)
T ss_dssp             CCTTCCCSCEEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTS
T ss_pred             ccccCCCceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCC
Confidence                    4899999998742                                    135778999999999999999 9


Q ss_pred             CCCchhhHHHhhhhHHHHHHHhcC--CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          513 RNWAGLVEKAMALDQTTLMQVLDG--NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       513 ~~Pf~~~~~~~~~~~~~~~~ild~--~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .+||+.....   ....+......  .....+..++.++.+|+.+||+.|  |..|||+.+|++
T Consensus       237 ~~Pf~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~Rps~~eil~  295 (434)
T 2rio_A          237 KHPFGDKYSR---ESNIIRGIFSLDEMKCLHDRSLIAEATDLISQMIDHD--PLKRPTAMKVLR  295 (434)
T ss_dssp             CCTTCSTTTH---HHHHHHTCCCCCCCTTCCCHHHHHHHHHHHHHHTCSS--GGGSCCHHHHHT
T ss_pred             CCCCCCchhh---HHHHhcCCCCcccccccccccchHHHHHHHHHHhhCC--hhhCCCHHHHHh
Confidence            9999642111   11111111111  111223467899999999999999  889999999985

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=1.1e-33  Score=299.78  Aligned_cols=213  Identities=15%  Similarity=0.196  Sum_probs=175.3

Q ss_pred             hhcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC--------CHHHHHHHHHHHHhcC--CCCccceeccccc
Q 005680          334 ATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL--------SEEDFQAKVSFLTAVR--HPHLVAVMGCCSE  401 (683)
Q Consensus       334 at~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~--------~~~~~~~Ev~iL~~l~--HpnIV~l~g~~~~  401 (683)
                      ..++|. ..+++|+|+||.||+|..  +|..||||++....        ....+.+|+.++.+++  ||||+++++++.+
T Consensus        41 ~~~~y~-~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~  119 (320)
T 3a99_A           41 LESQYQ-VGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER  119 (320)
T ss_dssp             CTTTEE-EEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEEC
T ss_pred             ccCceE-EEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEec
Confidence            334454 346778999999999998  68999999987321        2245778999999996  5999999999965


Q ss_pred             --ceeEEEeecCC-CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccccc-CC
Q 005680          402 --LKCIVFEYMPN-GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD-RN  477 (683)
Q Consensus       402 --~~~LV~Ey~~g-gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld-~~  477 (683)
                        ..++||||+.+ ++|.+++.          ....+++..+..|+.||+.||.|||+   .+|+||||||+|||++ .+
T Consensus       120 ~~~~~lv~e~~~~~~~L~~~l~----------~~~~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~  186 (320)
T 3a99_A          120 PDSFVLILERPEPVQDLFDFIT----------ERGALQEELARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNR  186 (320)
T ss_dssp             SSEEEEEEECCSSEEEHHHHHH----------HHCSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTT
T ss_pred             CCcEEEEEEcCCCCccHHHHHh----------ccCCCCHHHHHHHHHHHHHHHHHHHH---CCcEeCCCCHHHEEEeCCC
Confidence              78999999976 89999994          44579999999999999999999999   6799999999999999 78


Q ss_pred             CcEEEecCCCccc-----------------------cC-CCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHH
Q 005680          478 LVAKISGLGLNIC-----------------------DQ-LNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQV  533 (683)
Q Consensus       478 ~~~KL~DFGla~~-----------------------~~-~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~i  533 (683)
                      +.+||+|||++..                       .. ++.++|||||||++|+|+||+.||.....           +
T Consensus       187 ~~~kL~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~-----------~  255 (320)
T 3a99_A          187 GELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEE-----------I  255 (320)
T ss_dssp             TEEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH-----------H
T ss_pred             CCEEEeeCccccccccccccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChhh-----------h
Confidence            9999999998753                       12 36788999999999999999999965321           1


Q ss_pred             hcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          534 LDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       534 ld~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .. ....++..+++.+.+|+.+||+.|  |..|||+.++++
T Consensus       256 ~~-~~~~~~~~~~~~~~~li~~~l~~d--p~~Rps~~~ll~  293 (320)
T 3a99_A          256 IR-GQVFFRQRVSSECQHLIRWCLALR--PSDRPTFEEIQN  293 (320)
T ss_dssp             HH-CCCCCSSCCCHHHHHHHHHHTCSS--GGGSCCHHHHHT
T ss_pred             hc-ccccccccCCHHHHHHHHHHccCC--hhhCcCHHHHhc
Confidence            11 122345567889999999999999  889999999875

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=5.4e-33  Score=291.79  Aligned_cols=220  Identities=18%  Similarity=0.264  Sum_probs=164.6

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCCH----HHHHHHHHHHHhcCCCCccceeccccc--ceeEEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSE----EDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVF  407 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~----~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~  407 (683)
                      ++|... +.+|.|+||.||+|.+  +|+.||||++......    ..+..+..++..++||||+++++++.+  ..++||
T Consensus        25 ~~y~~~-~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~  103 (318)
T 2dyl_A           25 NDLENL-GEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM  103 (318)
T ss_dssp             GGEEEE-EEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             cccccc-ceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence            445433 5678999999999998  5899999999744332    233445567888899999999999865  789999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCC-cEEeccCCCCcccccCCCcEEEecCC
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPR-PIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~-~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      ||+ ++.+..++.         .....+++..+..++.||+.||.|||+   . +|+||||||+|||++.++.+||+|||
T Consensus       104 e~~-~~~~~~l~~---------~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~~i~H~dlkp~Nil~~~~~~~kl~dfg  170 (318)
T 2dyl_A          104 ELM-GTCAEKLKK---------RMQGPIPERILGKMTVAIVKALYYLKE---KHGVIHRDVKPSNILLDERGQIKLCDFG  170 (318)
T ss_dssp             CCC-SEEHHHHHH---------HHTSCCCHHHHHHHHHHHHHHHHHHHH---HHCCCCCCCCGGGEEECTTSCEEECCCT
T ss_pred             ecc-CCcHHHHHH---------HhccCCCHHHHHHHHHHHHHHHHHHHh---hCCEEeCCCCHHHEEECCCCCEEEEECC
Confidence            999 455554442         124578999999999999999999998   4 69999999999999999999999999


Q ss_pred             Cccc-----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCC
Q 005680          487 LNIC-----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGN  537 (683)
Q Consensus       487 la~~-----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~  537 (683)
                      ++..                             ..++.++|||||||++|+|++|+.||.....    ....+..++...
T Consensus       171 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~----~~~~~~~~~~~~  246 (318)
T 2dyl_A          171 ISGRLVDDKAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKT----DFEVLTKVLQEE  246 (318)
T ss_dssp             TC--------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCS----HHHHHHHHHHSC
T ss_pred             CchhccCCccccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCc----cHHHHHHHhccC
Confidence            8742                             1356789999999999999999999964211    122233333333


Q ss_pred             CCCCC--hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          538 AGIWP--LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       538 ~~~~p--~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ....+  ..++..+.+|+.+||+.|  |..|||+.++++.
T Consensus       247 ~~~~~~~~~~~~~l~~li~~~l~~d--p~~Rps~~~ll~h  284 (318)
T 2dyl_A          247 PPLLPGHMGFSGDFQSFVKDCLTKD--HRKRPKYNKLLEH  284 (318)
T ss_dssp             CCCCCSSSCCCHHHHHHHHHHTCSC--TTTSCCHHHHTTS
T ss_pred             CCCCCccCCCCHHHHHHHHHHccCC--hhHCcCHHHHhhC
Confidence            33333  357889999999999999  8899999999864

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.97  E-value=7.2e-33  Score=306.89  Aligned_cols=216  Identities=21%  Similarity=0.252  Sum_probs=165.1

Q ss_pred             cCccccccccccCCceE-EEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEEeecC
Q 005680          336 EDFSERFRLKCAGDWTN-VYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~-Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      .+|... +++|.|+||. ||++..+|+.||||++.... ...+.+|+.+|..+ +|||||++++++.+  ..|||||||.
T Consensus        24 ~~y~~~-~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~-~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~  101 (432)
T 3p23_A           24 ISFCPK-DVLGHGAEGTIVYRGMFDNRDVAVKRILPEC-FSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCA  101 (432)
T ss_dssp             EEEEEE-EEEEECGGGCEEEEEESSSSEEEEEEECTTT-EEECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred             EEEecC-CeeecCcCEEEEEEEEeCCeEEEEEEECHHH-HHHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECCC
Confidence            345443 5778999998 56666689999999996432 23467899999999 79999999999866  6799999997


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC-----CCcEEEecCC
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR-----NLVAKISGLG  486 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~-----~~~~KL~DFG  486 (683)
                       |+|.+++...         ...+++..++.|+.||+.||.|||+   .+|+||||||+||||+.     ...+||+|||
T Consensus       102 -g~L~~~l~~~---------~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG  168 (432)
T 3p23_A          102 -ATLQEYVEQK---------DFAHLGLEPITLLQQTTSGLAHLHS---LNIVHRDLKPHNILISMPNAHGKIKAMISDFG  168 (432)
T ss_dssp             -EEHHHHHHSS---------SCCCCSSCHHHHHHHHHHHHHHHHH---TTCCCCCCSTTSEEECCCBTTTBCCEEECCTT
T ss_pred             -CCHHHHHHhc---------CCCccchhHHHHHHHHHHHHHHHHH---CcCEeCCCCHHHEEEecCCCCCceeEEEeccc
Confidence             6999999533         2334445567899999999999999   67999999999999953     3468899999


Q ss_pred             Cccc-------------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHh
Q 005680          487 LNIC-------------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVL  534 (683)
Q Consensus       487 la~~-------------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~il  534 (683)
                      +|+.                               ..++.++|||||||++|+|+| |.+||+....      .......
T Consensus       169 ~a~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~------~~~~~~~  242 (432)
T 3p23_A          169 LCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQ------RQANILL  242 (432)
T ss_dssp             EEECC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTT------HHHHHHT
T ss_pred             ceeeccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhH------HHHHHHh
Confidence            8742                               124568999999999999999 9999864211      1111122


Q ss_pred             cC---CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          535 DG---NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       535 d~---~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ..   .....+...+..+.+|+.+||+.|  |..|||+.+|++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~li~~~L~~d--P~~Rps~~evl~  283 (432)
T 3p23_A          243 GACSLDCLHPEKHEDVIARELIEKMIAMD--PQKRPSAKHVLK  283 (432)
T ss_dssp             TCCCCTTSCTTCHHHHHHHHHHHHHSCSS--GGGSCCHHHHHT
T ss_pred             ccCCccccCccccccHHHHHHHHHHHhCC--HhhCCCHHHHHh
Confidence            21   111223356778999999999999  889999999984

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.97  E-value=8.3e-32  Score=286.72  Aligned_cols=207  Identities=13%  Similarity=0.074  Sum_probs=160.0

Q ss_pred             ccccccCCceEEEEEEECCeeEEEEEcCCCC----------CHHHHHHHHHHHHhcC---------CCCccceec-----
Q 005680          342 FRLKCAGDWTNVYRGRLNHASVAIKTLNNGL----------SEEDFQAKVSFLTAVR---------HPHLVAVMG-----  397 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~g~~VAvK~l~~~~----------~~~~~~~Ev~iL~~l~---------HpnIV~l~g-----  397 (683)
                      .+.+|+|+||.||+|.++|+.||||++....          ....+.+|+.+++.++         |||||++++     
T Consensus        25 ~~~lG~G~~g~V~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~~~~~~~  104 (336)
T 2vuw_A           25 CEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQ  104 (336)
T ss_dssp             CEEEEEETTEEEEEEEETTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEEEEEEEE
T ss_pred             eeeecccCceEEEEEEeCCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhcceeEec
Confidence            4567899999999999999999999997322          2277899999999886         555555544     


Q ss_pred             ------------cc---------------ccceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhh
Q 005680          398 ------------CC---------------SELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLG  450 (683)
Q Consensus       398 ------------~~---------------~~~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~a  450 (683)
                                  ++               .+..||||||+++|++.+.+.           ...+++..+..|+.||+.|
T Consensus       105 ~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~-----------~~~~~~~~~~~i~~qi~~a  173 (336)
T 2vuw_A          105 GSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMR-----------TKLSSLATAKSILHQLTAS  173 (336)
T ss_dssp             SSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGT-----------TTCCCHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHH-----------hcCCCHHHHHHHHHHHHHH
Confidence                        43               237899999999998777772           2458999999999999999


Q ss_pred             hhhhc-cCCCCcEEeccCCCCcccccCCC--------------------cEEEecCCCccc-------------------
Q 005680          451 LSFLH-STEPRPIVHGSLTPSSILLDRNL--------------------VAKISGLGLNIC-------------------  490 (683)
Q Consensus       451 L~yLH-~~~~~~IiHrDLKP~NILld~~~--------------------~~KL~DFGla~~-------------------  490 (683)
                      |.||| +   .+|+||||||+||||+.++                    .+||+|||+|+.                   
T Consensus       174 L~~lH~~---~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~~~~gt~~y~aPE~~~  250 (336)
T 2vuw_A          174 LAVAEAS---LRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFT  250 (336)
T ss_dssp             HHHHHHH---HCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETTEEECCCCTTCSGGGC
T ss_pred             HHHHHHh---CCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCCcEEEeecccChhhhc
Confidence            99999 8   6799999999999999887                    999999999864                   


Q ss_pred             cCCCcccccccHHHH-HHHHhhCCCCchhhHHHhhhhHHHHHHHhcC---CC---CCCChhhHHHHHHHHHHhhhcCCCc
Q 005680          491 DQLNVRSDIRAFGTL-LLHLLTGRNWAGLVEKAMALDQTTLMQVLDG---NA---GIWPLDLAEELAGIALKCLSADQDA  563 (683)
Q Consensus       491 ~~~t~ksDVwSlGvi-L~eLltG~~Pf~~~~~~~~~~~~~~~~ild~---~~---~~~p~~~~~~l~~Li~~CL~~dP~p  563 (683)
                      +..+.++||||||++ .+++++|..||....+..    .....+...   ..   ...+..+++++.+|+.+||+.|   
T Consensus       251 g~~~~~~Diwsl~~~~~~~~~~g~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~d---  323 (336)
T 2vuw_A          251 GDGDYQFDIYRLMKKENNNRWGEYHPYSNVLWLH----YLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRTMLNFS---  323 (336)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCTTSCCTHHHHHHHH----HHHHHHHHTCCCSSCCCSHHHHHHHHHHHHHHHHGGGSS---
T ss_pred             CCCccceehhhhhCCCCcccccccCCCcchhhhh----HHHHhhhhhhccCcccchhhhhhcCHHHHHHHHHHhccC---
Confidence            234789999998777 778999999996533211    111122211   11   1123468899999999999865   


Q ss_pred             cccccHHHHH
Q 005680          564 NRDLRIAGVM  573 (683)
Q Consensus       564 ~~RPs~~eVl  573 (683)
                          |+.+++
T Consensus       324 ----sa~e~l  329 (336)
T 2vuw_A          324 ----SATDLL  329 (336)
T ss_dssp             ----SHHHHH
T ss_pred             ----CHHHHH
Confidence                777776

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.97  E-value=7.7e-32  Score=314.85  Aligned_cols=214  Identities=21%  Similarity=0.223  Sum_probs=170.0

Q ss_pred             cCccccccccccCCceEEEEEEE---CCeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--c-----
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL---NHASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--L-----  402 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~---~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~-----  402 (683)
                      ++|.. .+.+|.|+||.||+|.+   +|+.||||++.....   ...+.+|+.++.+++|||||+++++|.+  .     
T Consensus        80 ~~y~i-~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~  158 (681)
T 2pzi_A           80 GQYEV-KGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV  158 (681)
T ss_dssp             TTEEE-EEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred             CceEE-EEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence            34443 35678999999999997   479999999874333   3468899999999999999999999865  2     


Q ss_pred             eeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEE
Q 005680          403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKI  482 (683)
Q Consensus       403 ~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL  482 (683)
                      .||||||++|++|.+++.          .  .+++..++.|+.||+.||.|||+   .+||||||||+||||+.+ .+||
T Consensus       159 ~~lv~E~~~g~~L~~~~~----------~--~l~~~~~~~~~~qi~~aL~~lH~---~giiHrDlkp~NIll~~~-~~kl  222 (681)
T 2pzi_A          159 GYIVMEYVGGQSLKRSKG----------Q--KLPVAEAIAYLLEILPALSYLHS---IGLVYNDLKPENIMLTEE-QLKL  222 (681)
T ss_dssp             EEEEEECCCCEECC--------------C--CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECSS-CEEE
T ss_pred             eEEEEEeCCCCcHHHHHh----------C--CCCHHHHHHHHHHHHHHHHHHHH---CCCeecccChHHeEEeCC-cEEE
Confidence            699999999999998772          2  69999999999999999999999   679999999999999875 8999


Q ss_pred             ecCCCccc--------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCC-
Q 005680          483 SGLGLNIC--------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIW-  541 (683)
Q Consensus       483 ~DFGla~~--------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~-  541 (683)
                      +|||+++.                    ..++.++|||||||++|+|++|.+||.....             +...... 
T Consensus       223 ~DFG~a~~~~~~~~~~gt~~y~aPE~~~~~~~~~sDi~slG~~l~~l~~g~~~~~~~~~-------------~~~~~~~~  289 (681)
T 2pzi_A          223 IDLGAVSRINSFGYLYGTPGFQAPEIVRTGPTVATDIYTVGRTLAALTLDLPTRNGRYV-------------DGLPEDDP  289 (681)
T ss_dssp             CCCTTCEETTCCSCCCCCTTTSCTTHHHHCSCHHHHHHHHHHHHHHHHSCCCEETTEEC-------------SSCCTTCH
T ss_pred             EecccchhcccCCccCCCccccCHHHHcCCCCCceehhhhHHHHHHHHhCCCCCccccc-------------cccccccc
Confidence            99999853                    2347799999999999999999998863110             0101111 


Q ss_pred             ChhhHHHHHHHHHHhhhcCCCcccccc-HHHHHHHHHHHHH
Q 005680          542 PLDLAEELAGIALKCLSADQDANRDLR-IAGVMKELDEVRK  581 (683)
Q Consensus       542 p~~~~~~l~~Li~~CL~~dP~p~~RPs-~~eVl~~L~~l~~  581 (683)
                      ....++.+.+||.+||+.|  |..||+ +.++...|..+.+
T Consensus       290 ~~~~~~~l~~li~~~l~~d--P~~R~~~~~~l~~~l~~~~~  328 (681)
T 2pzi_A          290 VLKTYDSYGRLLRRAIDPD--PRQRFTTAEEMSAQLTGVLR  328 (681)
T ss_dssp             HHHHCHHHHHHHHHHTCSS--GGGSCSSHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHhhhccCC--hhhCCCHHHHHHHHHHHHHH
Confidence            1234578999999999999  889995 6667777776654

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.97  E-value=7.5e-32  Score=311.89  Aligned_cols=233  Identities=21%  Similarity=0.235  Sum_probs=175.9

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--------c
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--------L  402 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--------~  402 (683)
                      ++|.. .+.+|.|+||.||+|.+  +|..||||++.....   ...+.+|+.++.+++|||||++++++..        .
T Consensus        14 grY~i-~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~   92 (676)
T 3qa8_A           14 GPWEM-KERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL   92 (676)
T ss_dssp             ---CC-CCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred             CCeEE-EEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence            44543 45678999999999998  689999999874433   3568899999999999999999998633        5


Q ss_pred             eeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc---
Q 005680          403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV---  479 (683)
Q Consensus       403 ~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~---  479 (683)
                      .++||||++||+|.+++...       .....+++..++.|+.||+.||.|||+   .+|+||||||+|||++.++.   
T Consensus        93 ~~LVmEy~~ggsL~~~L~~~-------~~~~~lse~~i~~I~~QLl~aL~yLHs---~gIVHrDLKP~NILl~~~g~~~~  162 (676)
T 3qa8_A           93 PLLAMEYCEGGDLRKYLNQF-------ENCCGLKEGPIRTLLSDISSALRYLHE---NRIIHRDLKPENIVLQPGPQRLI  162 (676)
T ss_dssp             CCCEEECCSSCBHHHHHHSS-------SCTTCCCSSHHHHHHHHHHHHHHHHHH---TTBCCCCCCSTTEEEECCSSSCE
T ss_pred             EEEEEEeCCCCCHHHHHHhc-------ccCCCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCCHHHeEeecCCCcee
Confidence            68999999999999999643       233468999999999999999999999   67999999999999987664   


Q ss_pred             EEEecCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhh----hhHHHHH
Q 005680          480 AKISGLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMA----LDQTTLM  531 (683)
Q Consensus       480 ~KL~DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~----~~~~~~~  531 (683)
                      +||+|||++..                        ..++.++|||||||++|+|++|..||........    .......
T Consensus       163 vKL~DFG~a~~~~~~~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~~~~~~i~~~~~~  242 (676)
T 3qa8_A          163 HKIIDLGYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNE  242 (676)
T ss_dssp             EEECSCCCCCBTTSCCCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHHHSSTTCC-----
T ss_pred             EEEcccccccccccccccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccchhhhhhhhhcccch
Confidence            99999999853                        3467899999999999999999999853211000    0000000


Q ss_pred             H-Hh----cC---------CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHH-----HHHHHHHHHH
Q 005680          532 Q-VL----DG---------NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAG-----VMKELDEVRK  581 (683)
Q Consensus       532 ~-il----d~---------~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~e-----Vl~~L~~l~~  581 (683)
                      . ..    .+         .....+..+++.+.+|+.+||..|  |.+|||+.+     .+..++.+..
T Consensus       243 ~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~D--P~kRPTa~elL~hp~F~~l~~iL~  309 (676)
T 3qa8_A          243 HIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWH--QRQRGTDPQNPNVGCFQALDSILS  309 (676)
T ss_dssp             -CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSS--CC---CCTTCCCCTTHHHHHHHHC
T ss_pred             hhhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCC--HhhCcCHHHHhcCHHHHHHHHHHh
Confidence            0 00    00         112234568899999999999999  889999988     5566666654

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.97  E-value=2.6e-31  Score=292.37  Aligned_cols=214  Identities=13%  Similarity=0.044  Sum_probs=160.6

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC-----CCHHHHHHHHHHHHhcCC-CCccceecc----------------
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG-----LSEEDFQAKVSFLTAVRH-PHLVAVMGC----------------  398 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~H-pnIV~l~g~----------------  398 (683)
                      +++|+|+||.||+|.+  +|+.||||++...     ...+.+.+|+.++..++| +|+..+..+                
T Consensus        84 ~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (413)
T 3dzo_A           84 TVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKK  163 (413)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEEECCC--
T ss_pred             cccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhcccCCCC
Confidence            5788999999999998  5899999998722     124679999999999987 332211111                


Q ss_pred             -----cc-------cceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEecc
Q 005680          399 -----CS-------ELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGS  466 (683)
Q Consensus       399 -----~~-------~~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrD  466 (683)
                           +.       ...+++|+++ +++|.+++.......   .....+++..++.|+.||+.||.|||+   .+|||||
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~---~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~iiHrD  236 (413)
T 3dzo_A          164 KMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHS---STHKSLVHHARLQLTLQVIRLLASLHH---YGLVHTY  236 (413)
T ss_dssp             -------------CCSEEEEEECC-SEEHHHHHHHHHHHT---TTSHHHHHHHHHHHHHHHHHHHHHHHH---TTEECSC
T ss_pred             ccccccCCCccccccceEEEeehh-cCCHHHHHHHhhccc---ccCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCC
Confidence                 11       1346677765 589999984221000   234568999999999999999999999   7799999


Q ss_pred             CCCCcccccCCCcEEEecCCCccc-------------------------------cCCCcccccccHHHHHHHHhhCCCC
Q 005680          467 LTPSSILLDRNLVAKISGLGLNIC-------------------------------DQLNVRSDIRAFGTLLLHLLTGRNW  515 (683)
Q Consensus       467 LKP~NILld~~~~~KL~DFGla~~-------------------------------~~~t~ksDVwSlGviL~eLltG~~P  515 (683)
                      |||+||||+.++.+||+|||+++.                               ..++.++|||||||++|+|+||+.|
T Consensus       237 iKp~NILl~~~~~~kL~DFG~a~~~~~~~~~~~g~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~P  316 (413)
T 3dzo_A          237 LRPVDIVLDQRGGVFLTGFEHLVRDGASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLP  316 (413)
T ss_dssp             CCGGGEEECTTCCEEECCGGGCEETTEEECCCCCTTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCC
T ss_pred             cccceEEEecCCeEEEEeccceeecCCccccCCCCceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCCC
Confidence            999999999999999999999742                               1255699999999999999999999


Q ss_pred             chhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          516 AGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       516 f~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      |.......     ....++..     ...+++.+.+|+.+||+.|  |.+|||+.++++.
T Consensus       317 f~~~~~~~-----~~~~~~~~-----~~~~~~~~~~li~~~l~~d--P~~Rpt~~~~l~~  364 (413)
T 3dzo_A          317 NTDDAALG-----GSEWIFRS-----CKNIPQPVRALLEGFLRYP--KEDRLLPLQAMET  364 (413)
T ss_dssp             CCTTGGGS-----CSGGGGSS-----CCCCCHHHHHHHHHHTCSS--GGGSCCHHHHTTS
T ss_pred             CCCcchhh-----hHHHHHhh-----cccCCHHHHHHHHHHccCC--hhhCcCHHHHHhC
Confidence            97532210     01111111     1245688999999999999  8899999888653

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.92  E-value=3.5e-26  Score=261.76  Aligned_cols=154  Identities=18%  Similarity=0.182  Sum_probs=116.1

Q ss_pred             cCCceEEEEEEE--CCeeEEEEEcCCCC------------CHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEEee
Q 005680          347 AGDWTNVYRGRL--NHASVAIKTLNNGL------------SEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVFEY  409 (683)
Q Consensus       347 ~G~fG~Vykg~~--~g~~VAvK~l~~~~------------~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~Ey  409 (683)
                      .|++|.++.++.  .|..||||++....            ..++|.+|+++|+++ .|+||+++++++.+  ..||||||
T Consensus       244 ~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVMEy  323 (569)
T 4azs_A          244 AGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVMEK  323 (569)
T ss_dssp             --------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEEEC
T ss_pred             cCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEEec
Confidence            455555555443  68899999996321            125699999999999 79999999999977  78999999


Q ss_pred             cCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCcc
Q 005680          410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNI  489 (683)
Q Consensus       410 ~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~  489 (683)
                      ++||+|.++|.          ...+++..   .|+.||+.||.|||+   .|||||||||+||||+.+|.+||+|||+|+
T Consensus       324 v~G~~L~d~i~----------~~~~l~~~---~I~~QIl~AL~ylH~---~GIIHRDIKPeNILL~~dg~vKL~DFGlAr  387 (569)
T 4azs_A          324 LPGRLLSDMLA----------AGEEIDRE---KILGSLLRSLAALEK---QGFWHDDVRPWNVMVDARQHARLIDFGSIV  387 (569)
T ss_dssp             CCSEEHHHHHH----------TTCCCCHH---HHHHHHHHHHHHHHH---TTCEESCCCGGGEEECTTSCEEECCCTTEE
T ss_pred             CCCCcHHHHHH----------hCCCCCHH---HHHHHHHHHHHHHHH---CCceeccCchHhEEECCCCCEEEeecccCe
Confidence            99999999994          44566654   589999999999999   779999999999999999999999999997


Q ss_pred             c---cCCCcccccccHHHHHHHHhhCCCCc
Q 005680          490 C---DQLNVRSDIRAFGTLLLHLLTGRNWA  516 (683)
Q Consensus       490 ~---~~~t~ksDVwSlGviL~eLltG~~Pf  516 (683)
                      .   ......+++|+.|++..|+++|+.++
T Consensus       388 ~~~~~~~~~~t~vGTp~YmAPE~l~g~~~~  417 (569)
T 4azs_A          388 TTPQDCSWPTNLVQSFFVFVNELFAENKSW  417 (569)
T ss_dssp             SCC---CCSHHHHHHHHHHHHHHC------
T ss_pred             eCCCCCccccCceechhhccHHHhCCCCCC
Confidence            5   22345567777777777777776544

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.86  E-value=2.5e-22  Score=228.45  Aligned_cols=126  Identities=19%  Similarity=0.213  Sum_probs=103.8

Q ss_pred             ccccccCCceEEEEEEECCeeEEEEEcCCCC----------CHHHHHHHHHHHHhcCCCCcc--ceecccccceeEEEee
Q 005680          342 FRLKCAGDWTNVYRGRLNHASVAIKTLNNGL----------SEEDFQAKVSFLTAVRHPHLV--AVMGCCSELKCIVFEY  409 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~g~~VAvK~l~~~~----------~~~~~~~Ev~iL~~l~HpnIV--~l~g~~~~~~~LV~Ey  409 (683)
                      .+++|+|+||.||+|...+..+|+|+.....          ..+.+.+|+.+|++++|||||  .++++..+..||||||
T Consensus       341 ~~~LG~G~fg~Vy~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVmE~  420 (540)
T 3en9_A          341 EHLIGKGAEADIKRDSYLDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIMMSY  420 (540)
T ss_dssp             -------CCEEEEEEECSSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEEEC
T ss_pred             CCEEeeCCCEEEEEEEECCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEEEC
Confidence            3578999999999998889999999865211          123579999999999999999  6666656688999999


Q ss_pred             cCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCcc
Q 005680          410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNI  489 (683)
Q Consensus       410 ~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~  489 (683)
                      ++||+|.+++.          .        +..|+.||+.||.|||+   .+|+||||||+|||++.  .+||+|||+|+
T Consensus       421 ~~ggsL~~~l~----------~--------~~~i~~qi~~aL~~LH~---~gIiHrDiKp~NILl~~--~~kL~DFGla~  477 (540)
T 3en9_A          421 INGKLAKDVIE----------D--------NLDIAYKIGEIVGKLHK---NDVIHNDLTTSNFIFDK--DLYIIDFGLGK  477 (540)
T ss_dssp             CCSEEHHHHST----------T--------CTHHHHHHHHHHHHHHH---TTEECTTCCTTSEEESS--SEEECCCTTCE
T ss_pred             CCCCCHHHHHH----------H--------HHHHHHHHHHHHHHHHH---CcCccCCCCHHHEEECC--eEEEEECccCE
Confidence            99999999993          2        45799999999999999   67999999999999998  99999999997


Q ss_pred             c
Q 005680          490 C  490 (683)
Q Consensus       490 ~  490 (683)
                      .
T Consensus       478 ~  478 (540)
T 3en9_A          478 I  478 (540)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.84  E-value=2.1e-21  Score=203.01  Aligned_cols=129  Identities=14%  Similarity=0.112  Sum_probs=106.0

Q ss_pred             ccccccccccCCceEEEEEEE-CCeeEEEEEcCCCC--------------------CHHHHHHHHHHHHhcCCCCcccee
Q 005680          338 FSERFRLKCAGDWTNVYRGRL-NHASVAIKTLNNGL--------------------SEEDFQAKVSFLTAVRHPHLVAVM  396 (683)
Q Consensus       338 F~~~~~liG~G~fG~Vykg~~-~g~~VAvK~l~~~~--------------------~~~~~~~Ev~iL~~l~HpnIV~l~  396 (683)
                      +....+.+|.|+||.||+|.+ +|..||||+++...                    ....+.+|+.++++++  | ++++
T Consensus        91 ~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~-~~v~  167 (282)
T 1zar_A           91 VDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--G-LAVP  167 (282)
T ss_dssp             CSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--T-SSSC
T ss_pred             EEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--C-CCcC
Confidence            333447789999999999999 68999999996221                    2346889999999999  5 6666


Q ss_pred             ccccc-ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccccc
Q 005680          397 GCCSE-LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD  475 (683)
Q Consensus       397 g~~~~-~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld  475 (683)
                      +++.. ..|+||||++||+|.+ +.          .      .....++.||+.||.|||+   .+|+||||||+|||++
T Consensus       168 ~~~~~~~~~lvmE~~~g~~L~~-l~----------~------~~~~~i~~qi~~~l~~lH~---~giiHrDlkp~NILl~  227 (282)
T 1zar_A          168 KVYAWEGNAVLMELIDAKELYR-VR----------V------ENPDEVLDMILEEVAKFYH---RGIVHGDLSQYNVLVS  227 (282)
T ss_dssp             CEEEEETTEEEEECCCCEEGGG-CC----------C------SCHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEEE
T ss_pred             eEEeccceEEEEEecCCCcHHH-cc----------h------hhHHHHHHHHHHHHHHHHH---CCCEeCCCCHHHEEEE
Confidence            65544 7799999999999998 51          1      1234699999999999999   6799999999999999


Q ss_pred             CCCcEEEecCCCccc
Q 005680          476 RNLVAKISGLGLNIC  490 (683)
Q Consensus       476 ~~~~~KL~DFGla~~  490 (683)
                       ++.+||+|||+|+.
T Consensus       228 -~~~vkl~DFG~a~~  241 (282)
T 1zar_A          228 -EEGIWIIDFPQSVE  241 (282)
T ss_dssp             -TTEEEECCCTTCEE
T ss_pred             -CCcEEEEECCCCeE
Confidence             99999999999975

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.77  E-value=2.6e-19  Score=184.34  Aligned_cols=133  Identities=14%  Similarity=0.105  Sum_probs=102.8

Q ss_pred             ccccccccccCCceEEEEEEE--CCee--EEEEEcCCCC-C-------------------------HHHHHHHHHHHHhc
Q 005680          338 FSERFRLKCAGDWTNVYRGRL--NHAS--VAIKTLNNGL-S-------------------------EEDFQAKVSFLTAV  387 (683)
Q Consensus       338 F~~~~~liG~G~fG~Vykg~~--~g~~--VAvK~l~~~~-~-------------------------~~~~~~Ev~iL~~l  387 (683)
                      +......+|.|+||.||+|.+  +|..  ||||+++... .                         ...+.+|+.+|.++
T Consensus        48 ~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l  127 (258)
T 1zth_A           48 ITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERA  127 (258)
T ss_dssp             EEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred             chhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHH
Confidence            344557789999999999998  7999  9999875321 1                         12678999999999


Q ss_pred             CCCCc--cceecccccceeEEEeecCC-C----CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhc-cCCC
Q 005680          388 RHPHL--VAVMGCCSELKCIVFEYMPN-G----NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLH-STEP  459 (683)
Q Consensus       388 ~HpnI--V~l~g~~~~~~~LV~Ey~~g-g----sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH-~~~~  459 (683)
                      .|+++  ..+++  .+..+|||||+.+ |    +|.+++.             ..++..+..++.||+.||.||| +   
T Consensus       128 ~~~~i~~p~~~~--~~~~~lVmE~~g~~g~~~~~L~~~~~-------------~~~~~~~~~i~~qi~~~l~~lH~~---  189 (258)
T 1zth_A          128 KEAGVSVPQPYT--YMKNVLLMEFIGEDELPAPTLVELGR-------------ELKELDVEGIFNDVVENVKRLYQE---  189 (258)
T ss_dssp             HHTTCCCCCEEE--EETTEEEEECCEETTEECCBHHHHGG-------------GGGGSCHHHHHHHHHHHHHHHHHT---
T ss_pred             HhCCCCCCeEEE--cCCCEEEEEecCCCCCccccHHHHhh-------------ccChHHHHHHHHHHHHHHHHHHHH---
Confidence            88865  33333  3467899999942 4    4544431             1234456789999999999999 8   


Q ss_pred             CcEEeccCCCCcccccCCCcEEEecCCCccc
Q 005680          460 RPIVHGSLTPSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       460 ~~IiHrDLKP~NILld~~~~~KL~DFGla~~  490 (683)
                      .+|+||||||+|||++.  .++|+|||+|..
T Consensus       190 ~givHrDlkp~NILl~~--~~~liDFG~a~~  218 (258)
T 1zth_A          190 AELVHADLSEYNIMYID--KVYFIDMGQAVT  218 (258)
T ss_dssp             SCEECSSCSTTSEEESS--SEEECCCTTCEE
T ss_pred             CCEEeCCCCHHHEEEcC--cEEEEECccccc
Confidence            67999999999999988  999999999964

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.58  E-value=5.8e-16  Score=168.29  Aligned_cols=135  Identities=12%  Similarity=0.046  Sum_probs=95.0

Q ss_pred             CccccccccccCCceEEEEEEE-CCeeEEEEEcCCC----------------CCHHHHHHHHHHHHhcCCCCccceeccc
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL-NHASVAIKTLNNG----------------LSEEDFQAKVSFLTAVRHPHLVAVMGCC  399 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~-~g~~VAvK~l~~~----------------~~~~~~~~Ev~iL~~l~HpnIV~l~g~~  399 (683)
                      ..+.....+|.|+||.||+|.. +|+.||||+++..                ........++.+.....|+|+++++...
T Consensus        95 ~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~g  174 (397)
T 4gyi_A           95 DVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEG  174 (397)
T ss_dssp             SCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3455567789999999999998 7899999987521                0112233333333333444444443322


Q ss_pred             --------ccceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCc
Q 005680          400 --------SELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSS  471 (683)
Q Consensus       400 --------~~~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~N  471 (683)
                              ....+|||||++|++|.++..          .      .....++.||+.+|.|||.   .+||||||||.|
T Consensus       175 v~vp~p~~~~~~~LVME~i~G~~L~~l~~----------~------~~~~~l~~qll~~l~~lH~---~gIVHrDLKp~N  235 (397)
T 4gyi_A          175 FPVPEPIAQSRHTIVMSLVDALPMRQVSS----------V------PDPASLYADLIALILRLAK---HGLIHGDFNEFN  235 (397)
T ss_dssp             CSCCCEEEEETTEEEEECCSCEEGGGCCC----------C------SCHHHHHHHHHHHHHHHHH---TTEECSCCSTTS
T ss_pred             CCCCeeeeccCceEEEEecCCccHhhhcc----------c------HHHHHHHHHHHHHHHHHHH---CCCcCCCCCHHH
Confidence                    123479999999988876551          1      1235688999999999999   669999999999


Q ss_pred             ccccCCC----------cEEEecCCCccc
Q 005680          472 ILLDRNL----------VAKISGLGLNIC  490 (683)
Q Consensus       472 ILld~~~----------~~KL~DFGla~~  490 (683)
                      |||+.++          .+.|+||+-+..
T Consensus       236 ILl~~dgd~~d~~~~~~~~~iID~~Q~V~  264 (397)
T 4gyi_A          236 ILIREEKDAEDPSSITLTPIIIXFPQMVS  264 (397)
T ss_dssp             EEEEEEECSSCTTSEEEEEEECCCTTCEE
T ss_pred             EEEeCCCCcccccccccceEEEEeCCccc
Confidence            9998776          489999997643

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.48  E-value=3.8e-14  Score=124.56  Aligned_cols=78  Identities=22%  Similarity=0.361  Sum_probs=72.5

Q ss_pred             CCCCCCccccccccccccCCCcccCCC-cchhhHHHHHHHcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHhhcCCCC
Q 005680          604 DSNDVPSVFICPIFQEVMKTPHVAADG-FSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNKQSSVH  682 (683)
Q Consensus       604 sss~~Ps~f~cPIs~elm~dPvv~~dG-~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN~~lr~~I~~w~~~~~~~~  682 (683)
                      ....+|..|.|||+.++|.|||+++.| ++|+|.+|..|+.. +.+||+|+++|....|+||+.||++|+.|+.++.++.
T Consensus        15 ~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~~   93 (98)
T 1wgm_A           15 TYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQS   93 (98)
T ss_dssp             CCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTCS
T ss_pred             hhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchhh
Confidence            346789999999999999999999999 99999999999976 6899999999999999999999999999999988654

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.47  E-value=2.1e-14  Score=139.11  Aligned_cols=77  Identities=23%  Similarity=0.431  Sum_probs=72.2

Q ss_pred             CCCCCccccccccccccCCCcccCCCcchhhHHHHHHHcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHhhcCCC
Q 005680          605 SNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNKQSSV  681 (683)
Q Consensus       605 ss~~Ps~f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN~~lr~~I~~w~~~~~~~  681 (683)
                      ...+|+.|.|||+.++|.|||++++|+||++.+|..|+..++.+||+|+.+++...|+||++||++|+.|+.+|+|+
T Consensus       100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~  176 (179)
T 2f42_A          100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWV  176 (179)
T ss_dssp             CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTC
T ss_pred             ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCc
Confidence            35679999999999999999999999999999999999765558999999999999999999999999999999986

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.46  E-value=6.1e-14  Score=123.74  Aligned_cols=76  Identities=24%  Similarity=0.403  Sum_probs=71.1

Q ss_pred             CCCCCCccccccccccccCCCcccCCCcchhhHHHHHHHcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHhhcCC
Q 005680          604 DSNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNKQSS  680 (683)
Q Consensus       604 sss~~Ps~f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN~~lr~~I~~w~~~~~~  680 (683)
                      ....+|..|.|||+.++|.|||+++.|+||++.+|..|+. ++.+||+|+.+++...|+||+.||++|+.|+.++..
T Consensus        22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~   97 (100)
T 2kre_A           22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQN   97 (100)
T ss_dssp             SCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTTC
T ss_pred             hhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCChhhceECHHHHHHHHHHHHHhhh
Confidence            3567899999999999999999999999999999999997 478999999999999999999999999999998864

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.46  E-value=3.6e-14  Score=121.51  Aligned_cols=75  Identities=24%  Similarity=0.390  Sum_probs=69.9

Q ss_pred             CCCCCCccccccccccccCCCcccCCCcchhhHHHHHHHcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHhhcC
Q 005680          604 DSNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNKQS  679 (683)
Q Consensus       604 sss~~Ps~f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN~~lr~~I~~w~~~~~  679 (683)
                      ....+|..|.|||+.++|.|||+++.|+||++.+|..|+.. +.+||+|++++....|+||++||++|+.|+.++.
T Consensus         7 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~   81 (85)
T 2kr4_A            7 DYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ   81 (85)
T ss_dssp             CCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred             hhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence            34578999999999999999999999999999999999984 6899999999999999999999999999998765

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=99.38  E-value=2.1e-13  Score=159.66  Aligned_cols=76  Identities=25%  Similarity=0.441  Sum_probs=70.8

Q ss_pred             CCCCCccccccccccccCCCcccCCC-cchhhHHHHHHHcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHhhcCCC
Q 005680          605 SNDVPSVFICPIFQEVMKTPHVAADG-FSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNKQSSV  681 (683)
Q Consensus       605 ss~~Ps~f~cPIs~elm~dPvv~~dG-~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN~~lr~~I~~w~~~~~~~  681 (683)
                      ...+|++|.|||+.++|.|||++++| +||||++|++|+.. +.|||+|+++|++..|+||++||++|++|+.++..+
T Consensus       885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~~  961 (968)
T 3m62_A          885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKEE  961 (968)
T ss_dssp             HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHTT
T ss_pred             ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHhh
Confidence            45889999999999999999999997 79999999999986 689999999999999999999999999999877644

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.23  E-value=4.9e-12  Score=130.97  Aligned_cols=78  Identities=24%  Similarity=0.441  Sum_probs=73.4

Q ss_pred             CCCCCCccccccccccccCCCcccCCCcchhhHHHHHHHcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHhhcCCC
Q 005680          604 DSNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNKQSSV  681 (683)
Q Consensus       604 sss~~Ps~f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN~~lr~~I~~w~~~~~~~  681 (683)
                      ....+|..|.|||+.++|.|||+++.|+||++.+|..|+..++.+||+|+.+++...|+||++||++|+.|+.+++|+
T Consensus       201 ~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~  278 (281)
T 2c2l_A          201 KKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV  278 (281)
T ss_dssp             SCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred             cCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCC
Confidence            356789999999999999999999999999999999999877777999999999999999999999999999999986

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.21  E-value=1.5e-11  Score=125.43  Aligned_cols=133  Identities=13%  Similarity=0.055  Sum_probs=102.3

Q ss_pred             ccccCCceEEEEEEECCeeEEEEEcCCC--CCHHHHHHHHHHHHhcC-CCCccceeccccc--ceeEEEeecCCCCchhh
Q 005680          344 LKCAGDWTNVYRGRLNHASVAIKTLNNG--LSEEDFQAKVSFLTAVR-HPHLVAVMGCCSE--LKCIVFEYMPNGNLRDK  418 (683)
Q Consensus       344 liG~G~fG~Vykg~~~g~~VAvK~l~~~--~~~~~~~~Ev~iL~~l~-HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~~  418 (683)
                      +.++|+++.||++...|..+++|+....  .....+.+|+.++..+. +..+.++++++.+  ..|+||||++|.+|.+.
T Consensus        21 ~~~g~s~~~v~~~~~~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~~~  100 (263)
T 3tm0_A           21 DTEGMSPAKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEE  100 (263)
T ss_dssp             CCSCCSSSEEEEEECSSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCSSEEHHHH
T ss_pred             eccCCCCCeEEEEECCCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEEecCCeehhhc
Confidence            4456777899999888899999998631  23456899999999994 6777788888755  67899999999998776


Q ss_pred             hhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccC-----------------------------------------
Q 005680          419 LFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHST-----------------------------------------  457 (683)
Q Consensus       419 L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~-----------------------------------------  457 (683)
                      +.               +......++.+++.+|..||+.                                         
T Consensus       101 ~~---------------~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (263)
T 3tm0_A          101 YE---------------DEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFK  165 (263)
T ss_dssp             CC---------------TTTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCSSS
T ss_pred             cC---------------CcccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccccccCC
Confidence            41               0112246788888899999981                                         


Q ss_pred             ---------------CCCcEEeccCCCCcccccCCCcEEEecCCCcccc
Q 005680          458 ---------------EPRPIVHGSLTPSSILLDRNLVAKISGLGLNICD  491 (683)
Q Consensus       458 ---------------~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~~  491 (683)
                                     .+..++|+|++|.|||++.+..+.|+||+.+..+
T Consensus       166 ~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~g  214 (263)
T 3tm0_A          166 DPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRA  214 (263)
T ss_dssp             SHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCEEE
T ss_pred             CHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcccC
Confidence                           1145999999999999987666789999988543

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=4.9e-12  Score=110.25  Aligned_cols=73  Identities=26%  Similarity=0.405  Sum_probs=66.1

Q ss_pred             CCCccccccccccccCCCcccC-CCcchhhHHHHHHHcCC-----CCCCCCCccc---cCCCCCCCcHHHHHHHHHHHhh
Q 005680          607 DVPSVFICPIFQEVMKTPHVAA-DGFSYELEAMEEWLGMG-----HDTSPMTNLR---LKHKYLTPNHTLRSLIQEWHNK  677 (683)
Q Consensus       607 ~~Ps~f~cPIs~elm~dPvv~~-dG~TyEr~aI~~wl~~g-----~~tsP~T~~~---l~~~~l~PN~~lr~~I~~w~~~  677 (683)
                      ..+..|.|||+.++|.|||+++ .|++|++.+|..|+..+     ..+||+|+.+   +....|+||+.|+.+|..|+.+
T Consensus         3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~   82 (94)
T 2yu4_A            3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK   82 (94)
T ss_dssp             SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred             CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence            4577899999999999999996 99999999999999653     4699998887   8899999999999999999987


Q ss_pred             cC
Q 005680          678 QS  679 (683)
Q Consensus       678 ~~  679 (683)
                      +.
T Consensus        83 ~~   84 (94)
T 2yu4_A           83 RH   84 (94)
T ss_dssp             CC
T ss_pred             hc
Confidence            75

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.12  E-value=7.8e-11  Score=118.88  Aligned_cols=128  Identities=15%  Similarity=0.161  Sum_probs=92.4

Q ss_pred             ccccCCceEEEEEEE-CCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCc--cceeccccc--ceeEEEeecCCCCchhh
Q 005680          344 LKCAGDWTNVYRGRL-NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHL--VAVMGCCSE--LKCIVFEYMPNGNLRDK  418 (683)
Q Consensus       344 liG~G~fG~Vykg~~-~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnI--V~l~g~~~~--~~~LV~Ey~~ggsL~~~  418 (683)
                      +.++|+.+.||++.. +|..+++|+.... ....+.+|+.++..+.+.++  .++++++.+  ..++||||++|.+|.  
T Consensus        27 ~~~gg~~~~v~~~~~~~g~~~vlK~~~~~-~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~G~~l~--  103 (264)
T 1nd4_A           27 QTIGCSDAAVFRLSAQGRPVLFVKTDLSG-ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLL--  103 (264)
T ss_dssp             CSCTTSSCEEEEEECTTSCCEEEEEECSC-TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEETT--
T ss_pred             cccCCCCceEEEEecCCCCeEEEEeCCcc-cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecCCcccC--
Confidence            334566799999987 4678999997643 33568899999999965454  457777654  679999999998884  


Q ss_pred             hhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCC----------------------------------------
Q 005680          419 LFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTE----------------------------------------  458 (683)
Q Consensus       419 L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~----------------------------------------  458 (683)
                      ..          .   .+   ...++.+++..|..||+..                                        
T Consensus       104 ~~----------~---~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (264)
T 1nd4_A          104 SS----------H---LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAP  167 (264)
T ss_dssp             TS----------C---CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCH
T ss_pred             cC----------c---CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccH
Confidence            21          0   01   1245556666666666532                                        


Q ss_pred             ---------------CCcEEeccCCCCcccccCCCcEEEecCCCccc
Q 005680          459 ---------------PRPIVHGSLTPSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       459 ---------------~~~IiHrDLKP~NILld~~~~~KL~DFGla~~  490 (683)
                                     +..++|+|++|.|||++.++.+.|+|||.+..
T Consensus       168 ~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~  214 (264)
T 1nd4_A          168 AELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV  214 (264)
T ss_dssp             HHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             HHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence                           23499999999999998877778999999854

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=99.06  E-value=3.9e-10  Score=120.73  Aligned_cols=137  Identities=12%  Similarity=0.179  Sum_probs=105.6

Q ss_pred             cccccCCceEEEEEEECCeeEEEEEcC--CCC---CHHHHHHHHHHHHhcC--CCCccceecccccc-----eeEEEeec
Q 005680          343 RLKCAGDWTNVYRGRLNHASVAIKTLN--NGL---SEEDFQAKVSFLTAVR--HPHLVAVMGCCSEL-----KCIVFEYM  410 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g~~VAvK~l~--~~~---~~~~~~~Ev~iL~~l~--HpnIV~l~g~~~~~-----~~LV~Ey~  410 (683)
                      +.+++|.++.||+....+..+++|+..  ...   ....+.+|+.+++.+.  +..+.++++++.+.     .|+||||+
T Consensus        44 ~~l~~G~sn~~y~v~~~~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme~v  123 (359)
T 3dxp_A           44 EQFKGGQSNPTFKLVTPGQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIMEFV  123 (359)
T ss_dssp             EECCC-CCSCEEEEECSSCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEECC
T ss_pred             EEcCCcccceEEEEEECCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEEec
Confidence            345678899999999877889999876  322   2356889999999997  45678888888663     78999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCC--------------------------------
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTE--------------------------------  458 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~--------------------------------  458 (683)
                      +|.++.+..            ...++...+..++.+++.+|..||+..                                
T Consensus       124 ~G~~l~~~~------------~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (359)
T 3dxp_A          124 SGRVLWDQS------------LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSET  191 (359)
T ss_dssp             CCBCCCCTT------------CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCC
T ss_pred             CCeecCCCc------------cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCC
Confidence            998885532            124678888899999999999999731                                


Q ss_pred             -----------------------CCcEEeccCCCCcccccCCCc--EEEecCCCcccc
Q 005680          459 -----------------------PRPIVHGSLTPSSILLDRNLV--AKISGLGLNICD  491 (683)
Q Consensus       459 -----------------------~~~IiHrDLKP~NILld~~~~--~KL~DFGla~~~  491 (683)
                                             +..++|+|++|.|||++.++.  +.|+||+.+..+
T Consensus       192 ~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~g  249 (359)
T 3dxp_A          192 ESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTLG  249 (359)
T ss_dssp             SCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEEE
T ss_pred             cCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECccccccC
Confidence                                   257999999999999987753  689999998653

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=99.04  E-value=2.2e-11  Score=97.42  Aligned_cols=56  Identities=18%  Similarity=0.285  Sum_probs=51.4

Q ss_pred             cccccccccccCCCccc-CCCcchhhHHHHHHHcCCCCCCCCCccccCCCCCCCcHHH
Q 005680          611 VFICPIFQEVMKTPHVA-ADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTL  667 (683)
Q Consensus       611 ~f~cPIs~elm~dPvv~-~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN~~l  667 (683)
                      .|.|||+.++|.|||++ ++|++|||++|+.|+.. +.+||+|+++|...+|+||+.-
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~~~   59 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIVPS   59 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECCCC
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECccC
Confidence            58999999999999999 99999999999999975 4679999999999999999854

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.04  E-value=1.7e-10  Score=96.53  Aligned_cols=75  Identities=39%  Similarity=0.716  Sum_probs=71.0

Q ss_pred             CCCCccccccccccccCCCcccCCCcchhhHHHHHHHcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHhhcCC
Q 005680          606 NDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNKQSS  680 (683)
Q Consensus       606 s~~Ps~f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN~~lr~~I~~w~~~~~~  680 (683)
                      ..+|+.+.|||..++|.+|++++.|++|.+..|..|+..++.++|+++.++....++||+.|+++|+.|+.+++.
T Consensus         3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~   77 (78)
T 1t1h_A            3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI   77 (78)
T ss_dssp             CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred             cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence            467889999999999999999999999999999999988789999999999999999999999999999998864

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.95  E-value=7.9e-10  Score=115.62  Aligned_cols=159  Identities=16%  Similarity=0.130  Sum_probs=110.4

Q ss_pred             ccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhcC-CCC--ccceeccccc-----ceeEEEeecCCCCc
Q 005680          344 LKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVR-HPH--LVAVMGCCSE-----LKCIVFEYMPNGNL  415 (683)
Q Consensus       344 liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~-Hpn--IV~l~g~~~~-----~~~LV~Ey~~ggsL  415 (683)
                      .+++|.+..||+..   ..+++|+.........+.+|+.+|..+. +..  +..+++....     ..|+||+|++|.+|
T Consensus        27 ~~~~G~~n~v~~v~---~~~vlR~~~~~~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i~G~~l  103 (304)
T 3sg8_A           27 ISGEGNDCIAYEIN---RDFIFKFPKHSRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIKGVPL  103 (304)
T ss_dssp             EEEECSSEEEEEST---TSEEEEEESSHHHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECCCCEEC
T ss_pred             ecCCCCcceEEEEC---CEEEEEecCCcchHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEcccCCeEC
Confidence            45678888899863   5699998754434567899999999883 333  3344544432     35899999999888


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccC--------------------------------------
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHST--------------------------------------  457 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~--------------------------------------  457 (683)
                      .+...            ..++..++..++.+++..|..||+.                                      
T Consensus       104 ~~~~~------------~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (304)
T 3sg8_A          104 TPLLL------------NNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMK  171 (304)
T ss_dssp             CHHHH------------HTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred             Ccccc------------ccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHH
Confidence            75431            2345555666666666666666641                                      


Q ss_pred             -----------------CCCcEEeccCCCCcccccC--CCcEEEecCCCcccc--------------------------C
Q 005680          458 -----------------EPRPIVHGSLTPSSILLDR--NLVAKISGLGLNICD--------------------------Q  492 (683)
Q Consensus       458 -----------------~~~~IiHrDLKP~NILld~--~~~~KL~DFGla~~~--------------------------~  492 (683)
                                       .+..++|+|++|.|||++.  ...+.|+||+.+..+                          .
T Consensus       172 ~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~  251 (304)
T 3sg8_A          172 KVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNH  251 (304)
T ss_dssp             HHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHH
Confidence                             1245899999999999988  567889999987431                          1


Q ss_pred             CCcc------------cccccHHHHHHHHhhCCCCch
Q 005680          493 LNVR------------SDIRAFGTLLLHLLTGRNWAG  517 (683)
Q Consensus       493 ~t~k------------sDVwSlGviL~eLltG~~Pf~  517 (683)
                      |...            .+.|++|.++|.+.+|.++|-
T Consensus       252 Y~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~g~~~~~  288 (304)
T 3sg8_A          252 YKHKDIPTVLEKYRMKEKYWSFEKIIYGKEYGYMDWY  288 (304)
T ss_dssp             HTCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            1111            478899999999999987663

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.41  E-value=7.5e-07  Score=93.38  Aligned_cols=71  Identities=4%  Similarity=-0.019  Sum_probs=51.8

Q ss_pred             ccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCC---Cccceecccc---cceeEEEeecCCCCchh
Q 005680          344 LKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHP---HLVAVMGCCS---ELKCIVFEYMPNGNLRD  417 (683)
Q Consensus       344 liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~Hp---nIV~l~g~~~---~~~~LV~Ey~~ggsL~~  417 (683)
                      .+++|....||+.   |..+++|+-........+.+|+.+|..+.+.   .+.+++.++.   ...++||+|++|.+|.+
T Consensus        26 ~l~~G~~n~v~~v---g~~~VlR~~~~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G~~l~~  102 (306)
T 3tdw_A           26 SLGEGFRNYAILV---NGDWVFRFPKSQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQGQILGE  102 (306)
T ss_dssp             EEEECSSEEEEEE---TTTEEEEEESSHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCSEECHH
T ss_pred             ecCCCcceeEEEE---CCEEEEEecCCchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCCeECch
Confidence            4466777889988   6789999854333346789999999999652   2445555553   25789999999988876

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=98.32  E-value=1.4e-06  Score=92.69  Aligned_cols=75  Identities=7%  Similarity=-0.028  Sum_probs=54.8

Q ss_pred             ccc-ccCCceEEEEEEEC--------CeeEEEEEcCCCC-----CHHHHHHHHHHHHhcC-C--CCccceeccccc----
Q 005680          343 RLK-CAGDWTNVYRGRLN--------HASVAIKTLNNGL-----SEEDFQAKVSFLTAVR-H--PHLVAVMGCCSE----  401 (683)
Q Consensus       343 ~li-G~G~fG~Vykg~~~--------g~~VAvK~l~~~~-----~~~~~~~Ev~iL~~l~-H--pnIV~l~g~~~~----  401 (683)
                      +.+ ++|....+|+....        +..+++|+.....     ....+.+|+.++..+. +  -.+.++++++.+    
T Consensus        26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~~  105 (357)
T 3ats_A           26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVL  105 (357)
T ss_dssp             EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTTT
T ss_pred             EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCcc
Confidence            344 66888899998765        7789999875322     2356889999998884 3  346677877654    


Q ss_pred             -ceeEEEeecCCCCchh
Q 005680          402 -LKCIVFEYMPNGNLRD  417 (683)
Q Consensus       402 -~~~LV~Ey~~ggsL~~  417 (683)
                       ..++||||++|.+|.+
T Consensus       106 g~~~~v~e~l~G~~l~~  122 (357)
T 3ats_A          106 GTPFFLMDYVEGVVPPD  122 (357)
T ss_dssp             SSCEEEEECCCCBCCCB
T ss_pred             CCceEEEEecCCCChhh
Confidence             3689999999888765

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.24  E-value=1.7e-06  Score=88.10  Aligned_cols=133  Identities=14%  Similarity=0.115  Sum_probs=86.3

Q ss_pred             ceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcC-CCCccceeccccc--ceeEEEeecCCCCchhhhhhccc
Q 005680          350 WTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVR-HPHLVAVMGCCSE--LKCIVFEYMPNGNLRDKLFTSQR  424 (683)
Q Consensus       350 fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~-HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~~L~~~~~  424 (683)
                      .+.||+...  .+..+++|+-.. .....+.+|..+|+.+. +--+.++++++.+  ..++|||+++|.++.+...... 
T Consensus        38 ~~~v~rl~~~~~~~~~~lk~~~~-~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~~~~~~~~~-  115 (272)
T 4gkh_A           38 GATIYRLYGKPNAPELFLKHGKG-SVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTAFQVLEEYP-  115 (272)
T ss_dssp             SCEEEEEECCTTCCCEEEEEEET-HHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEHHHHHHHCG-
T ss_pred             CCeEEEEEecCCCeEEEEEECCC-CCHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCccccccccCCH-
Confidence            347998776  457899998653 23467889999998884 3235567777654  6799999999988766542110 


Q ss_pred             ccccccccccCCHHHHHHHHHHHHhhhhhhcc------------------------------------------------
Q 005680          425 NYKNCSRARALRWLDRIHIAHEVCLGLSFLHS------------------------------------------------  456 (683)
Q Consensus       425 ~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~------------------------------------------------  456 (683)
                                   .....+..+++..|.-||.                                                
T Consensus       116 -------------~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (272)
T 4gkh_A          116 -------------DSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKE  182 (272)
T ss_dssp             -------------GGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHHH
T ss_pred             -------------HHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHHH
Confidence                         0011122222222222222                                                


Q ss_pred             -------CCCCcEEeccCCCCcccccCCCcEEEecCCCccccCCCccccc
Q 005680          457 -------TEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVRSDI  499 (683)
Q Consensus       457 -------~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~~~~t~ksDV  499 (683)
                             ..+..++|+|+.|.|||++.++.+-|+||+.+..+  .+..|+
T Consensus       183 l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~g--dp~~Dl  230 (272)
T 4gkh_A          183 MHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIA--DRYQDL  230 (272)
T ss_dssp             HHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEEE--ETHHHH
T ss_pred             HHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccccC--CHHHHH
Confidence                   11234899999999999998877889999998543  444554

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.23  E-value=1.2e-06  Score=88.91  Aligned_cols=72  Identities=10%  Similarity=0.168  Sum_probs=63.6

Q ss_pred             CCCCccccccccccccCCCccc-CCCcchhhHHHHHHHcC-CCCCCCCCc--cccCCCCCCCcHHHHHHHHHHHhh
Q 005680          606 NDVPSVFICPIFQEVMKTPHVA-ADGFSYELEAMEEWLGM-GHDTSPMTN--LRLKHKYLTPNHTLRSLIQEWHNK  677 (683)
Q Consensus       606 s~~Ps~f~cPIs~elm~dPvv~-~dG~TyEr~aI~~wl~~-g~~tsP~T~--~~l~~~~l~PN~~lr~~I~~w~~~  677 (683)
                      ......+.|||+.++|.+||+. ..|++|++.+|..|+.. +..+||+|+  .++....|+||+.|+..|+.|..+
T Consensus       176 ~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r  251 (267)
T 3htk_C          176 EGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK  251 (267)
T ss_dssp             CSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred             cCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence            3456789999999999999985 89999999999999975 346899955  999999999999999999999864

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=98.16  E-value=1.1e-05  Score=84.43  Aligned_cols=160  Identities=12%  Similarity=0.153  Sum_probs=89.2

Q ss_pred             ccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhcC--CCCccceecc--------cccceeEEEeecCCC
Q 005680          344 LKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVR--HPHLVAVMGC--------CSELKCIVFEYMPNG  413 (683)
Q Consensus       344 liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~--HpnIV~l~g~--------~~~~~~LV~Ey~~gg  413 (683)
                      .+++|..+.||+...++..+++|+...  ....+..|+.++..|.  .-.+.+++..        ..+..++||+|++|.
T Consensus        39 ~l~gG~~n~~~~v~~~~~~~vlk~~~~--~~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~i~G~  116 (346)
T 2q83_A           39 VIQGNQMALVWKVHTDSGAVCLKRIHR--PEKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDWIEGR  116 (346)
T ss_dssp             ECC----CEEEEEEETTEEEEEEEECS--CHHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEECCCCB
T ss_pred             eccccccCcEEEEEeCCCCEEEEecCC--CHHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEeecCc
Confidence            345567889999988776799999864  3455556666666653  1123333321        123578999999987


Q ss_pred             Cch-----------hh---hhhcccccc-ccc---ccccCCHHHH-------------------------------HHHH
Q 005680          414 NLR-----------DK---LFTSQRNYK-NCS---RARALRWLDR-------------------------------IHIA  444 (683)
Q Consensus       414 sL~-----------~~---L~~~~~~~~-~~~---~~~~L~~~~~-------------------------------~~I~  444 (683)
                      ++.           ..   |+....... +..   ....-.|...                               ..+.
T Consensus       117 ~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (346)
T 2q83_A          117 PFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQEIDGFI  196 (346)
T ss_dssp             CCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence            653           11   111100000 000   0011123211                               1111


Q ss_pred             HHHHhhhhhhcc----------CCCCcEEeccCCCCcccccCCCcEEEecCCCccccCCCcccccccHHHHHHHHh
Q 005680          445 HEVCLGLSFLHS----------TEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVRSDIRAFGTLLLHLL  510 (683)
Q Consensus       445 ~qIa~aL~yLH~----------~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~~~~t~ksDVwSlGviL~eLl  510 (683)
                      ..+..++.+|+.          ..+..++|+|++|.|||++.++.+.|+||+.+..+  .+.   |-|+.++..++
T Consensus       197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~g--~~~---~Dla~~l~~~~  267 (346)
T 2q83_A          197 EDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVSFD--LPI---RDLRKMIIPLL  267 (346)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCEEC--CTH---HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcccC--ChH---HHHHHHHHHHH
Confidence            223445666653          12367999999999999988889999999988543  233   44455555554

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=98.15  E-value=6e-06  Score=89.31  Aligned_cols=72  Identities=18%  Similarity=0.146  Sum_probs=50.7

Q ss_pred             cccccCCceEEEEEEE--CCeeEEEEEcCCC---------CCHHHHHHHHHHHHhcCC--CC-ccceecccccceeEEEe
Q 005680          343 RLKCAGDWTNVYRGRL--NHASVAIKTLNNG---------LSEEDFQAKVSFLTAVRH--PH-LVAVMGCCSELKCIVFE  408 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~--~g~~VAvK~l~~~---------~~~~~~~~Ev~iL~~l~H--pn-IV~l~g~~~~~~~LV~E  408 (683)
                      +.+|+|.++.||++..  .+..|+||.....         .....+..|..+|..+..  |. +.+++.+..+..++|||
T Consensus        36 ~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~d~~~~~lvmE  115 (397)
T 2olc_A           36 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSDTEMAVTVME  115 (397)
T ss_dssp             EECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEEETTTTEEEEC
T ss_pred             EECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEEcCCccEEEEE
Confidence            4567899999999965  5688999986421         123567889999988742  33 44666665567789999


Q ss_pred             ecCCCC
Q 005680          409 YMPNGN  414 (683)
Q Consensus       409 y~~ggs  414 (683)
                      |++|..
T Consensus       116 ~l~g~~  121 (397)
T 2olc_A          116 DLSHLK  121 (397)
T ss_dssp             CCTTSE
T ss_pred             eCCCcc
Confidence            998743

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.06  E-value=8.3e-06  Score=69.86  Aligned_cols=78  Identities=22%  Similarity=0.333  Sum_probs=68.3

Q ss_pred             CCCCCCccccccccccccCCCcccC-CCcchhhHHHHHHHcC-CCCCCCCCcccc-CCCCCCCcHHHHHHHHHHHhhcCC
Q 005680          604 DSNDVPSVFICPIFQEVMKTPHVAA-DGFSYELEAMEEWLGM-GHDTSPMTNLRL-KHKYLTPNHTLRSLIQEWHNKQSS  680 (683)
Q Consensus       604 sss~~Ps~f~cPIs~elm~dPvv~~-dG~TyEr~aI~~wl~~-g~~tsP~T~~~l-~~~~l~PN~~lr~~I~~w~~~~~~  680 (683)
                      ....++..+.|||..+++.+|++.+ -|++|-+..|..|+.. +..++|+.+.++ ....+.||..|+.+|+.|...++.
T Consensus         6 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~   85 (92)
T 3ztg_A            6 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGY   85 (92)
T ss_dssp             SCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTC
T ss_pred             ccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhH
Confidence            3456788999999999999999999 6999999999999853 457999999997 677899999999999999987664


Q ss_pred             C
Q 005680          681 V  681 (683)
Q Consensus       681 ~  681 (683)
                      .
T Consensus        86 ~   86 (92)
T 3ztg_A           86 T   86 (92)
T ss_dssp             C
T ss_pred             H
Confidence            3

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=97.90  E-value=2.6e-05  Score=85.25  Aligned_cols=70  Identities=17%  Similarity=0.171  Sum_probs=45.1

Q ss_pred             cccccCCceEEEEEEECCeeEEEEEcC-------CC--C--CHHHHHHHHHHHH-hcCCCCccceecccccceeEEEeec
Q 005680          343 RLKCAGDWTNVYRGRLNHASVAIKTLN-------NG--L--SEEDFQAKVSFLT-AVRHPHLVAVMGCCSELKCIVFEYM  410 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g~~VAvK~l~-------~~--~--~~~~~~~Ev~iL~-~l~HpnIV~l~g~~~~~~~LV~Ey~  410 (683)
                      +.+|.|..+.||++..++..++||...       ..  .  ....+..|+..+. ...+..+.+++.+..+..++||||+
T Consensus        40 ~~l~~G~~n~vyrv~~~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~~~~~~lv~e~l  119 (420)
T 2pyw_A           40 KEVGDGNLNFVFIVVGSSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFDRTMALIGMRYL  119 (420)
T ss_dssp             EECCCSSSCEEEEEECSSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHSGGGSCCEEEEETTTTEEEECCC
T ss_pred             EEccCCCcEEEEEEEcCCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhCCCCCCeEEEECCCccEEEEeec
Confidence            456778899999998777889999422       11  1  2223444433322 2233456677777666789999999


Q ss_pred             -CC
Q 005680          411 -PN  412 (683)
Q Consensus       411 -~g  412 (683)
                       +|
T Consensus       120 ~~g  122 (420)
T 2pyw_A          120 EPP  122 (420)
T ss_dssp             CTT
T ss_pred             CCc
Confidence             76

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=97.79  E-value=9.2e-05  Score=77.21  Aligned_cols=182  Identities=8%  Similarity=0.111  Sum_probs=98.2

Q ss_pred             cccCHHHHHHhhcCccc----cccccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCC--ccceec
Q 005680          324 REYAAEDIRLATEDFSE----RFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPH--LVAVMG  397 (683)
Q Consensus       324 ~~~s~~ei~~at~~F~~----~~~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~Hpn--IV~l~g  397 (683)
                      ..++.+++......|..    ..+.+++|....+|+...++..+++|+.........+..|+.++..+....  +.+++.
T Consensus         5 ~~~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g~~vlk~~~~~~~~~~l~~e~~~l~~L~~~g~~vP~~~~   84 (322)
T 2ppq_A            5 TDITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKDPLILTLYEKRVEKNDLPFFLGLMQHLAAKGLSCPLPLP   84 (322)
T ss_dssp             CCCCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSCCEEEEEECC---CCHHHHHHHHHHHHHHTTCCCCCBCC
T ss_pred             ccCCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCccEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCCCCcccC
Confidence            34566666666655543    223345677788999988666899999875334456778888888774222  233332


Q ss_pred             cc--------ccceeEEEeecCCCCchhh--------------hhhccccccccc-c-cccCCHHHHHHH----------
Q 005680          398 CC--------SELKCIVFEYMPNGNLRDK--------------LFTSQRNYKNCS-R-ARALRWLDRIHI----------  443 (683)
Q Consensus       398 ~~--------~~~~~LV~Ey~~ggsL~~~--------------L~~~~~~~~~~~-~-~~~L~~~~~~~I----------  443 (683)
                      ..        .+..++||+|++|.++...              ++.......... . .....|.....-          
T Consensus        85 ~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  164 (322)
T 2ppq_A           85 RKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEK  164 (322)
T ss_dssp             BTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTST
T ss_pred             CCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhh
Confidence            21        2356899999998765321              111100000000 0 000123221110          


Q ss_pred             --HHHHHhhhhhhcc----CCCCcEEeccCCCCcccccCCCcEEEecCCCccccCCCcccccccHHHHHHHHh
Q 005680          444 --AHEVCLGLSFLHS----TEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVRSDIRAFGTLLLHLL  510 (683)
Q Consensus       444 --~~qIa~aL~yLH~----~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~~~~t~ksDVwSlGviL~eLl  510 (683)
                        ...+...+.+++.    ..+..++|+|+.|.|||++.++.+.|+||+.+..+.  +   +|-+++++..++
T Consensus       165 ~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~g~--~---~~Dla~~l~~~~  232 (322)
T 2ppq_A          165 GLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACNDL--L---AYDVSICLNAWC  232 (322)
T ss_dssp             THHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCEEEE--H---HHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhccCch--h---HHHHHHHHHHHH
Confidence              0012223333332    234679999999999999887667899999885432  2   455566665544

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=97.63  E-value=0.00015  Score=76.35  Aligned_cols=152  Identities=14%  Similarity=0.143  Sum_probs=92.9

Q ss_pred             ccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhcC---CCCccceeccccc--ceeEEEeecCCCCchh-
Q 005680          344 LKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVR---HPHLVAVMGCCSE--LKCIVFEYMPNGNLRD-  417 (683)
Q Consensus       344 liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~---HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~-  417 (683)
                      -+++|....+|+...++..+++|+.... ....+..|...|+.|.   ...+.++++++..  ..++||||++|.++.. 
T Consensus        43 ~l~gG~~n~~y~v~~~~~~~vlK~~~~~-~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G~~~~~~  121 (312)
T 3jr1_A           43 KLYSGEMNEIWLINDEVQTVFVKINERS-YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNKSKNKQS  121 (312)
T ss_dssp             EECCSSSSEEEEEESSSCEEEEEEEEGG-GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCCCCCCTT
T ss_pred             EeCCccceeeeEEEECCCeEEEEeCCcc-cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccCCCCCch
Confidence            3467888999999888888999987532 3567899999998884   3557777777643  6899999999987632 


Q ss_pred             ----------hhhhccc--ccccc----------cccccCCHHHHH---HHHH----------------HHHhhh-hhhc
Q 005680          418 ----------KLFTSQR--NYKNC----------SRARALRWLDRI---HIAH----------------EVCLGL-SFLH  455 (683)
Q Consensus       418 ----------~L~~~~~--~~~~~----------~~~~~L~~~~~~---~I~~----------------qIa~aL-~yLH  455 (683)
                                .|+....  ..+..          .....-+|....   ++..                .++..+ ..|.
T Consensus       122 ~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~~l~~~L~  201 (312)
T 3jr1_A          122 SFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQIVADTLS  201 (312)
T ss_dssp             HHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhc
Confidence                      1221111  00000          000112454332   1111                111111 2332


Q ss_pred             c-CCCCcEEeccCCCCcccccCCCcEEEecCCCccccCCCcccccc
Q 005680          456 S-TEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVRSDIR  500 (683)
Q Consensus       456 ~-~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~~~~t~ksDVw  500 (683)
                      . ..+..+||+|+.+.||+++.++ +.|.||+ +..  -.+..|+.
T Consensus       202 ~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~-~~~--g~~~~Dl~  243 (312)
T 3jr1_A          202 KHNPKPSILHGNLWIENCIQVDDK-IFVCNPA-CYW--GDRECDIA  243 (312)
T ss_dssp             TCCCCCEEECSSCSGGGEEEETTE-EEECSCC-CEE--ECTHHHHH
T ss_pred             cCCCCceeEeCCCCcCcEeecCCC-eEEEcCc-ccc--CChHHHHH
Confidence            1 1236799999999999999887 8999984 322  23455554

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=97.61  E-value=8.2e-05  Score=78.26  Aligned_cols=150  Identities=9%  Similarity=-0.041  Sum_probs=80.1

Q ss_pred             CCceEEEEEEEC-CeeEEEEEcCCCCCHHHHHHHHHHHHhcCC--CCccceecccccceeEEEeecCCCCchhhhhhccc
Q 005680          348 GDWTNVYRGRLN-HASVAIKTLNNGLSEEDFQAKVSFLTAVRH--PHLVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQR  424 (683)
Q Consensus       348 G~fG~Vykg~~~-g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~H--pnIV~l~g~~~~~~~LV~Ey~~ggsL~~~L~~~~~  424 (683)
                      +++-.+|+.... |..+++|...... ...+..|+.++..+..  -.+.+++.+..+..++|||++.+.++.+++.....
T Consensus        30 ~s~~~~~r~~~~~~~~~vlk~~~~~~-~~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~g~ll~e~l~~~~l~~~l~~~~~  108 (333)
T 3csv_A           30 ASSRRYQRLRSPTGAKAVLMDWSPEE-GGDTQPFVDLAQYLRNLDISAPEIYAEEHARGLLLIEDLGDALFTEVINNDPA  108 (333)
T ss_dssp             ----CCEEEECTTCCEEEEEECCTTT-TCCSHHHHHHHHHHHHTTCBCCCEEEEETTTTEEEECCCCSCBHHHHHHHCGG
T ss_pred             CCCceEEEEEcCCCCeEEEEECCCCC-CccccHHHHHHHHHHhCCCCCCceeeecCCCCEEEEeeCCCcchHHHhcCCCc
Confidence            333347787764 7788888765321 1345667777777642  23456676655545889999987777655432110


Q ss_pred             c----------------cccccccccCCHHHH-----------------------HHHHHHHHhhhhhhccCCCCcEEec
Q 005680          425 N----------------YKNCSRARALRWLDR-----------------------IHIAHEVCLGLSFLHSTEPRPIVHG  465 (683)
Q Consensus       425 ~----------------~~~~~~~~~L~~~~~-----------------------~~I~~qIa~aL~yLH~~~~~~IiHr  465 (683)
                      .                .......+.++....                       ...+..+...+.......+..++|+
T Consensus       109 ~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~lvHg  188 (333)
T 3csv_A          109 QEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILSAQLEGDMVFVHR  188 (333)
T ss_dssp             GHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCSCCEEECS
T ss_pred             cHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcccCCCeeEeC
Confidence            0                000000011111110                       0011111111111011124679999


Q ss_pred             cCCCCcccccCC----CcEEEecCCCccccCCCcccccc
Q 005680          466 SLTPSSILLDRN----LVAKISGLGLNICDQLNVRSDIR  500 (683)
Q Consensus       466 DLKP~NILld~~----~~~KL~DFGla~~~~~t~ksDVw  500 (683)
                      |+.|.|||++.+    +.+.|+||+.+..+  .+..|+.
T Consensus       189 D~~~~Nil~~~~~~~~~~~~lIDf~~a~~G--~~~~DLa  225 (333)
T 3csv_A          189 DFHAQNLLWLPEREGLARVGVIDFQDAKLG--HRAYDLV  225 (333)
T ss_dssp             CCSGGGEEECTTSCGGGGEEECCCTTCEEE--CTTHHHH
T ss_pred             CcCcccEEeccCcCCCCCeEEEeCCCcCcC--CCHHHHH
Confidence            999999999874    68999999998654  3445554

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=97.48  E-value=0.00078  Score=70.30  Aligned_cols=175  Identities=10%  Similarity=0.072  Sum_probs=97.9

Q ss_pred             cccccCHHHHHHhhcCccc----cccccccCCceEEEEEEE-CCeeEEEEEcCCC-CCHHHHHHHHHHHHhcCCC--Ccc
Q 005680          322 AFREYAAEDIRLATEDFSE----RFRLKCAGDWTNVYRGRL-NHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHP--HLV  393 (683)
Q Consensus       322 ~~~~~s~~ei~~at~~F~~----~~~liG~G~fG~Vykg~~-~g~~VAvK~l~~~-~~~~~~~~Ev~iL~~l~Hp--nIV  393 (683)
                      ++..++.+.+......|.-    ....++ |....||+... +|..+++|..+.. .....+..|+.++..+...  .+.
T Consensus         7 ~~~~l~~~~i~~~l~~~g~~~~~~~~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~~~~~~~~~E~~~~~~L~~~g~~vp   85 (328)
T 1zyl_A            7 TFQTLHPDTIMDALFEHGIRVDSGLTPLN-SYENRVYQFQDEDRRRFVVKFYRPERWTADQILEEHQFALQLVNDEVPVA   85 (328)
T ss_dssp             CCCCCCHHHHHHHHHHTTCCCCSCCEEEC-CSSSEEEEECCTTCCCEEEEEECTTTSCHHHHHHHHHHHHHHHHTTCSBC
T ss_pred             CCCCCCHHHHHHHHHHcCCCCCceEEeec-CcccceEEEEcCCCCEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCeec
Confidence            4566677777666554432    223344 66778998876 4668999998733 4567788899988887422  234


Q ss_pred             ceecc-------cccceeEEEeecCCCCchh-----------h---hhhcccccccccccccCCHHHH------------
Q 005680          394 AVMGC-------CSELKCIVFEYMPNGNLRD-----------K---LFTSQRNYKNCSRARALRWLDR------------  440 (683)
Q Consensus       394 ~l~g~-------~~~~~~LV~Ey~~ggsL~~-----------~---L~~~~~~~~~~~~~~~L~~~~~------------  440 (683)
                      +++..       ..+..++||+|++|.++..           .   ++....... ......+++...            
T Consensus        86 ~~~~~~g~~~~~~~g~~~~l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~  164 (328)
T 1zyl_A           86 APVAFNGQTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQL-FIHRPTIGLNEYLIEPRKLFEDAT  164 (328)
T ss_dssp             CCCCBTTBSCEEETTEEEEEEECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSC-CSSSCBCSHHHHTHHHHHHHHTCS
T ss_pred             ceeecCCcEEEEECCEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCC-CccCCCCCHHHHHhhHHHHHhhcC
Confidence            44443       0124578999999865531           0   111100000 001112222111            


Q ss_pred             ----------HHHHHHHHhhhhhhc-cCCCCcEEeccCCCCcccccCCCcEEEecCCCccccCCCcccccccH
Q 005680          441 ----------IHIAHEVCLGLSFLH-STEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVRSDIRAF  502 (683)
Q Consensus       441 ----------~~I~~qIa~aL~yLH-~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~~~~t~ksDVwSl  502 (683)
                                ...+..++..+.-+- ...+..++|+|++|.|||++ + .+.|+||+.+..+  .+..|++.+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~g--~~~~Dla~~  233 (328)
T 1zyl_A          165 LIPSGLKAAFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARNG--PAVQDLWML  233 (328)
T ss_dssp             SSCTTTHHHHHHHHHHHHHHHHHHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCEE--CTTHHHHTT
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCcC--cHHHHHHHH
Confidence                      111112222222111 11336789999999999998 4 8999999988553  344566543

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=97.47  E-value=0.00015  Score=65.66  Aligned_cols=71  Identities=13%  Similarity=0.172  Sum_probs=63.9

Q ss_pred             CccccccccccccCCCcccCCCcchhhHHHHHHHcCCCCCCCCCccccCC-CCCCCcHHHHHHHHHHHhhcC
Q 005680          609 PSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKH-KYLTPNHTLRSLIQEWHNKQS  679 (683)
Q Consensus       609 Ps~f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~-~~l~PN~~lr~~I~~w~~~~~  679 (683)
                      +..+.|||..+.+.+|++++-|++|-+..|..|+..+..+||+.+.++.. ..+.||..|+.+|+.|.....
T Consensus        50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~~~  121 (124)
T 3fl2_A           50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPGYG  121 (124)
T ss_dssp             HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTTTT
T ss_pred             ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccccc
Confidence            34578999999999999999999999999999998767799999999987 889999999999999975443

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=97.46  E-value=0.00093  Score=68.72  Aligned_cols=70  Identities=16%  Similarity=0.216  Sum_probs=50.7

Q ss_pred             cccCCceEEEEEEE-CCeeEEEEEcCCC--CCHHHHHHHHHHHHhcCCC---CccceecccccceeEEEeecCCCCch
Q 005680          345 KCAGDWTNVYRGRL-NHASVAIKTLNNG--LSEEDFQAKVSFLTAVRHP---HLVAVMGCCSELKCIVFEYMPNGNLR  416 (683)
Q Consensus       345 iG~G~fG~Vykg~~-~g~~VAvK~l~~~--~~~~~~~~Ev~iL~~l~Hp---nIV~l~g~~~~~~~LV~Ey~~ggsL~  416 (683)
                      +|.|..+.||+.+. +|+.|.+|+....  .....|..|+..|+.|.-.   -+.+++++  +..++||||++++...
T Consensus        23 ~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~--~~~~lv~e~l~~~~~~   98 (288)
T 3f7w_A           23 RGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW--DDRTLAMEWVDERPPT   98 (288)
T ss_dssp             EEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE--ETTEEEEECCCCCCCC
T ss_pred             cCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEec--cCceEEEEeecccCCC
Confidence            46788999999998 7899999997632  2235688999999988421   23445544  3558999999877654

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=97.42  E-value=0.0003  Score=72.96  Aligned_cols=70  Identities=10%  Similarity=0.109  Sum_probs=46.6

Q ss_pred             cccccCCceEEEEEEECCeeEEEEEcCCCCC-HHHHHHHHHHHHhcCCCCc-cceecccccceeEEEeec-CCCCch
Q 005680          343 RLKCAGDWTNVYRGRLNHASVAIKTLNNGLS-EEDFQAKVSFLTAVRHPHL-VAVMGCCSELKCIVFEYM-PNGNLR  416 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~-~~~~~~Ev~iL~~l~HpnI-V~l~g~~~~~~~LV~Ey~-~ggsL~  416 (683)
                      +.+++|....+|+.    ..+++|+...... .-...+|+.++..+....+ .++++++.+..++|+||+ +|.+|.
T Consensus        24 ~~l~gG~tN~~~~~----~~~vlR~~~~~~~~~~~r~~E~~~l~~l~~~g~~P~~~~~~~~~~~~v~e~i~~g~~l~   96 (301)
T 3dxq_A           24 LERLGGLTNLVFRA----GDLCLRIPGKGTEEYINRANEAVAAREAAKAGVSPEVLHVDPATGVMVTRYIAGAQTMS   96 (301)
T ss_dssp             EEEESCSSEEEEEE----TTEEEEEECC----CCCHHHHHHHHHHHHHTTSSCCEEEECTTTCCEEEECCTTCEECC
T ss_pred             eEcCCcccccccee----eeEEEECCCCCccceeCHHHHHHHHHHHHHcCCCCceEEEECCCCEEEEeecCCCccCC
Confidence            44556778899998    6688898763211 1123578888877743223 467777776778999999 766654

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=97.36  E-value=0.00012  Score=68.79  Aligned_cols=70  Identities=16%  Similarity=0.251  Sum_probs=63.9

Q ss_pred             CCccccccccccccCCCcccCCCcchhhHHHHHHHcCCCCCCCCCccccCCC-CCCCcHHHHHHHHHHHhh
Q 005680          608 VPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHK-YLTPNHTLRSLIQEWHNK  677 (683)
Q Consensus       608 ~Ps~f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~-~l~PN~~lr~~I~~w~~~  677 (683)
                      ++..+.|||..+++.+|++++-|++|-+..|..|+..+..+||+.+.++... .+.||..|+.+|+.|...
T Consensus        75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~  145 (150)
T 1z6u_A           75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPG  145 (150)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTT
T ss_pred             CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhH
Confidence            4456889999999999999999999999999999987767999999999988 999999999999999754

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=97.28  E-value=0.00066  Score=74.53  Aligned_cols=71  Identities=23%  Similarity=0.253  Sum_probs=50.2

Q ss_pred             ccccCCceEEEEEEEC---------CeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCc-cceecccccceeEEEeecCCC
Q 005680          344 LKCAGDWTNVYRGRLN---------HASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHL-VAVMGCCSELKCIVFEYMPNG  413 (683)
Q Consensus       344 liG~G~fG~Vykg~~~---------g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnI-V~l~g~~~~~~~LV~Ey~~gg  413 (683)
                      .+++|....||++...         +..|++|+.........+..|..++..+...++ .++++.+.+  .+|+||++|.
T Consensus        80 ~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~~~~~li~E~~~l~~L~~~g~~P~l~~~~~~--g~v~e~l~G~  157 (429)
T 1nw1_A           80 RIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPETESHLVAESVIFTLLSERHLGPKLYGIFSG--GRLEEYIPSR  157 (429)
T ss_dssp             EECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCCCHHHHHHHHHHHHHHHHTTSSSCEEEEETT--EEEECCCCEE
T ss_pred             EeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCCcHHHHHHHHHHHHHHHhCCCCCcEEEEeCC--CEEEEEeCCc
Confidence            3456777899999874         478999987532232567789999998853334 577777665  3899999875


Q ss_pred             Cch
Q 005680          414 NLR  416 (683)
Q Consensus       414 sL~  416 (683)
                      +|.
T Consensus       158 ~l~  160 (429)
T 1nw1_A          158 PLS  160 (429)
T ss_dssp             ECC
T ss_pred             ccC
Confidence            554

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=97.20  E-value=0.00068  Score=73.30  Aligned_cols=160  Identities=11%  Similarity=0.074  Sum_probs=94.0

Q ss_pred             cccCCceEEEEEEEC---------CeeEEEEEcCCC-CCHHHHHHHHHHHHhcC-CCCccceecccccceeEEEeecCCC
Q 005680          345 KCAGDWTNVYRGRLN---------HASVAIKTLNNG-LSEEDFQAKVSFLTAVR-HPHLVAVMGCCSELKCIVFEYMPNG  413 (683)
Q Consensus       345 iG~G~fG~Vykg~~~---------g~~VAvK~l~~~-~~~~~~~~Ev~iL~~l~-HpnIV~l~g~~~~~~~LV~Ey~~gg  413 (683)
                      +.+|-...+|++...         +..|++|+.... .....+.+|..+++.+. +.-..++++++.+.  +||||++|.
T Consensus        58 lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~g--~v~e~i~G~  135 (379)
T 3feg_A           58 VSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVFPEG--RLEQYIPSR  135 (379)
T ss_dssp             C-----CCEEEEECCTTSCCCSSCCSEEEEEECC---CCHHHHHHHHHHHHHHHHTTSSCCEEEEETTE--EEEECCSEE
T ss_pred             cCCcccccEEEEEeCCCccccCCCCCeEEEEECCCccchHHHHHHHHHHHHHHHhcCCCCeEEEEcCCc--cEEEEecCc
Confidence            344667789998873         367999986421 23566779999998884 33335677777664  999999987


Q ss_pred             Cchhh-h-------------hhcccccccccccccCCHHHHHHHHHHHHhh-------------------hhh----hcc
Q 005680          414 NLRDK-L-------------FTSQRNYKNCSRARALRWLDRIHIAHEVCLG-------------------LSF----LHS  456 (683)
Q Consensus       414 sL~~~-L-------------~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~a-------------------L~y----LH~  456 (683)
                      +|..- +             ..-+............-|..+.++..++...                   +..    |..
T Consensus       136 ~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~L~~  215 (379)
T 3feg_A          136 PLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLLES  215 (379)
T ss_dssp             ECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHHHHHHHT
T ss_pred             cCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHhh
Confidence            66421 1             0000000000011111345555555544321                   122    211


Q ss_pred             -CCCCcEEeccCCCCcccccCC----CcEEEecCCCccccCCCcccccccHHHHHHHHhh
Q 005680          457 -TEPRPIVHGSLTPSSILLDRN----LVAKISGLGLNICDQLNVRSDIRAFGTLLLHLLT  511 (683)
Q Consensus       457 -~~~~~IiHrDLKP~NILld~~----~~~KL~DFGla~~~~~t~ksDVwSlGviL~eLlt  511 (683)
                       ..+..++|+|+.+.|||++.+    +.+.|+||..+..+.  +   .|-||..+.+...
T Consensus       216 ~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~~~--~---~~Dla~~~~~~~~  270 (379)
T 3feg_A          216 TPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSYNY--R---GFDIGNHFCEWVY  270 (379)
T ss_dssp             SCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEEEE--H---HHHHHHHHHHTTE
T ss_pred             cCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCcCC--h---HHHHHHHHHHHHh
Confidence             123579999999999999876    789999999885432  2   4567777777664

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=97.12  E-value=0.0015  Score=72.44  Aligned_cols=72  Identities=8%  Similarity=-0.000  Sum_probs=48.1

Q ss_pred             cccccCCceEEEEEEECC--eeEEEEEcCCCC-CHHHHHHHHHHHHhcCCCCc-cceecccccceeEEEeecCCCCch
Q 005680          343 RLKCAGDWTNVYRGRLNH--ASVAIKTLNNGL-SEEDFQAKVSFLTAVRHPHL-VAVMGCCSELKCIVFEYMPNGNLR  416 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g--~~VAvK~l~~~~-~~~~~~~Ev~iL~~l~HpnI-V~l~g~~~~~~~LV~Ey~~ggsL~  416 (683)
                      +.+++|-...+|++...+  ..|++|+..... ..-...+|..++..|...++ .++++++.+  .+||||++|.+|.
T Consensus       114 ~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~idR~~E~~vl~~L~~~gl~P~ll~~~~~--G~v~e~I~G~~l~  189 (458)
T 2qg7_A          114 QIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEIINREREKKISCILYNKNIAKKIYVFFTN--GRIEEFMDGYALS  189 (458)
T ss_dssp             EEECC--CEEEEEEEETTTTEEEEEEEECC-CCSCSCHHHHHHHHHHHTTSSSBCCEEEEETT--EEEEECCCSEECC
T ss_pred             EEcCCCeEeEEEEEEECCCCceEEEEECCCChhhhcCHHHHHHHHHHHHhcCCCCCEEEEeCC--eEEEEeeCCccCC
Confidence            344567778999999865  889999875321 11122589999999865555 567777754  3599999986654

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=97.04  E-value=0.00095  Score=71.22  Aligned_cols=70  Identities=7%  Similarity=0.068  Sum_probs=43.8

Q ss_pred             ccccCCceEEEEEEECC----------eeEEEEEcCCCCC-HHHHHHHHHHHHhcCCCCc-cceecccccceeEEEeecC
Q 005680          344 LKCAGDWTNVYRGRLNH----------ASVAIKTLNNGLS-EEDFQAKVSFLTAVRHPHL-VAVMGCCSELKCIVFEYMP  411 (683)
Q Consensus       344 liG~G~fG~Vykg~~~g----------~~VAvK~l~~~~~-~~~~~~Ev~iL~~l~HpnI-V~l~g~~~~~~~LV~Ey~~  411 (683)
                      .+++|....+|+....+          ..|++|+...... ......|..++..+...++ .++++..  ..++||+|++
T Consensus        40 ~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~~~~~~~E~~~l~~L~~~g~~P~~~~~~--~~~~v~e~i~  117 (369)
T 3c5i_A           40 QILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDELYNTISEFEVYKTMSKYKIAPQLLNTF--NGGRIEEWLY  117 (369)
T ss_dssp             EC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGGTSCHHHHHHHHHHHHHTTSSCCEEEEE--TTEEEEECCC
T ss_pred             EeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccceecHHHHHHHHHHHHhcCCCCceEEec--CCcEEEEEec
Confidence            34567778899998754          6888998753211 1124678888888853333 4666554  3478999999


Q ss_pred             CCCc
Q 005680          412 NGNL  415 (683)
Q Consensus       412 ggsL  415 (683)
                      |.++
T Consensus       118 G~~l  121 (369)
T 3c5i_A          118 GDPL  121 (369)
T ss_dssp             SEEC
T ss_pred             CCcC
Confidence            8655

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=96.83  E-value=0.00097  Score=57.67  Aligned_cols=70  Identities=14%  Similarity=0.251  Sum_probs=63.2

Q ss_pred             CccccccccccccCCCccc-CCCcchhhHHHHHHHcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHhhcC
Q 005680          609 PSVFICPIFQEVMKTPHVA-ADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNKQS  679 (683)
Q Consensus       609 Ps~f~cPIs~elm~dPvv~-~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN~~lr~~I~~w~~~~~  679 (683)
                      +..+.|||-.+.+.+|++. +-|++|-+..|..|+.. ..++|+.+.++....+.||..|+..|+.|....+
T Consensus        20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~   90 (99)
T 2y43_A           20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFARN   90 (99)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred             CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHH
Confidence            4568899999999999988 89999999999999975 5799999999998999999999999999986543

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=96.74  E-value=0.0046  Score=65.38  Aligned_cols=40  Identities=10%  Similarity=0.115  Sum_probs=31.7

Q ss_pred             CcEEeccCCCCcccccCCCcEEEecCCCccccCCCccccccc
Q 005680          460 RPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVRSDIRA  501 (683)
Q Consensus       460 ~~IiHrDLKP~NILld~~~~~KL~DFGla~~~~~t~ksDVwS  501 (683)
                      ..++|+|+.|.|||++.++.+.|+||+.+..+  .+..|+..
T Consensus       206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~~--~~~~Dla~  245 (339)
T 3i1a_A          206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPMLA--PKERDLMF  245 (339)
T ss_dssp             CEEECSCCCGGGEEECGGGCEEECCCSSCEEE--CTHHHHTT
T ss_pred             ceeEeCCCCcCCEEEeCCCeEEEEECCCCeeC--CHHHHHHH
Confidence            57999999999999998888999999887543  34445443

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=96.71  E-value=0.00071  Score=60.66  Aligned_cols=72  Identities=15%  Similarity=0.183  Sum_probs=65.1

Q ss_pred             CCCCCCccccccccccccCCCcccCCCcchhhHHHHHHHcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHH
Q 005680          604 DSNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWH  675 (683)
Q Consensus       604 sss~~Ps~f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN~~lr~~I~~w~  675 (683)
                      ....++..+.|||-.+++.+|+.++-|++|-+..|..|+..+..++|+.+.++....++||..++..|.++.
T Consensus        11 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~   82 (118)
T 3hct_A           11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM   82 (118)
T ss_dssp             BSSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred             hccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccce
Confidence            345677889999999999999999999999999999999876669999999999999999999999998753

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=96.44  E-value=0.0019  Score=57.79  Aligned_cols=65  Identities=15%  Similarity=0.231  Sum_probs=59.9

Q ss_pred             ccccccccccccCCCccc-CCCcchhhHHHHHHHcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHhh
Q 005680          610 SVFICPIFQEVMKTPHVA-ADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNK  677 (683)
Q Consensus       610 s~f~cPIs~elm~dPvv~-~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN~~lr~~I~~w~~~  677 (683)
                      ..+.|||-.+++.+|++. +-|++|-+..|..|+.   .++|+.+.++....+.||+.|+.+|..|...
T Consensus        21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~   86 (117)
T 1jm7_B           21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKL   86 (117)
T ss_dssp             HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHH
T ss_pred             hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHH
Confidence            457899999999999999 9999999999999986   7899999999999999999999999998754

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=96.42  E-value=0.0013  Score=62.53  Aligned_cols=71  Identities=18%  Similarity=0.334  Sum_probs=62.3

Q ss_pred             CCCCccccccccccccCCCccc-CCCcchhhHHHHHHHcCCCCCCCCCccccC-CCCCCCcHHHHHHHHHHHh
Q 005680          606 NDVPSVFICPIFQEVMKTPHVA-ADGFSYELEAMEEWLGMGHDTSPMTNLRLK-HKYLTPNHTLRSLIQEWHN  676 (683)
Q Consensus       606 s~~Ps~f~cPIs~elm~dPvv~-~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~-~~~l~PN~~lr~~I~~w~~  676 (683)
                      ......+.|||..+.+.+|+.. +-|++|-...|..|+..+..+||+.+.++. ...+.||..|+.+|..|..
T Consensus        49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~  121 (165)
T 2ckl_B           49 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP  121 (165)
T ss_dssp             -CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred             hhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence            3455678999999999999997 999999999999999987889999999984 5679999999999999854

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=96.35  E-value=0.0026  Score=55.87  Aligned_cols=68  Identities=9%  Similarity=0.224  Sum_probs=61.0

Q ss_pred             CCccccccccccccCCCccc-CCCcchhhHHHHHHHcCCCCCCCCCccccCCC----CCCCcHHHHHHHHHHHh
Q 005680          608 VPSVFICPIFQEVMKTPHVA-ADGFSYELEAMEEWLGMGHDTSPMTNLRLKHK----YLTPNHTLRSLIQEWHN  676 (683)
Q Consensus       608 ~Ps~f~cPIs~elm~dPvv~-~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~----~l~PN~~lr~~I~~w~~  676 (683)
                      ++..+.|||-.+.+.+|++. +-|++|-+..|..|+.. ..++|+.+.++...    .+.+|..|+.+|..|..
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~   84 (108)
T 2ckl_A           12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP   84 (108)
T ss_dssp             HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred             cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence            45678899999999999997 99999999999999976 48999999998876    78999999999998864

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=96.31  E-value=0.00043  Score=57.05  Aligned_cols=67  Identities=19%  Similarity=0.314  Sum_probs=58.6

Q ss_pred             CCCCCccccccccccccCCCcccCCCcchhhHHHHHHHcCC------CCCCCCCccccCCCCCCCcHHHHHHH
Q 005680          605 SNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMG------HDTSPMTNLRLKHKYLTPNHTLRSLI  671 (683)
Q Consensus       605 ss~~Ps~f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~g------~~tsP~T~~~l~~~~l~PN~~lr~~I  671 (683)
                      .......+.|||-.+.+.+|++.+-|++|-+..|..|+...      ..++|+-+.++....+.||+.|+++|
T Consensus         6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv   78 (79)
T 2egp_A            6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANIV   78 (79)
T ss_dssp             SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCCC
T ss_pred             HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHhh
Confidence            34567789999999999999999999999999999998753      67999999999999999999876543

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.23  E-value=0.0026  Score=52.78  Aligned_cols=68  Identities=15%  Similarity=0.164  Sum_probs=57.1

Q ss_pred             CCCCCccccccccccccCCCcccCCCcchhhHHHHHHHcCCCCCCCCCccccCCCCCCCcHHHHHHHHHH
Q 005680          605 SNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEW  674 (683)
Q Consensus       605 ss~~Ps~f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN~~lr~~I~~w  674 (683)
                      .......+.|||-.+.+.+|++.+-|++|-+..|..|+.. ..++|+-+.++. ..+.||..|...+..+
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~~~~~~   76 (81)
T 2csy_A            9 SEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMAKLQKS   76 (81)
T ss_dssp             SSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHHHHSSS
T ss_pred             cccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHHHHHhh
Confidence            3455667899999999999999999999999999999975 679999999997 7788897776655443

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.15  E-value=0.0022  Score=61.13  Aligned_cols=70  Identities=16%  Similarity=0.216  Sum_probs=64.0

Q ss_pred             CCCCCccccccccccccCCCcccCCCcchhhHHHHHHHcCCCCCCCCCccccCCCCCCCcHHHHHHHHHH
Q 005680          605 SNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEW  674 (683)
Q Consensus       605 ss~~Ps~f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN~~lr~~I~~w  674 (683)
                      ...+++.+.|||-.+++.+|+.++-|++|-+..|..|+..+..++|+-+.++....++||..++..|.+.
T Consensus        12 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l   81 (170)
T 3hcs_A           12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL   81 (170)
T ss_dssp             SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred             ccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence            4567889999999999999999999999999999999977667999999999999999999999998764

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=96.07  E-value=0.0023  Score=56.80  Aligned_cols=70  Identities=16%  Similarity=0.130  Sum_probs=62.6

Q ss_pred             CCCCccccccccccccCCCcccCCCcchhhHHHHHHHcCCCCCCCCCccccCC-------CCCCCcHHHHHHHHHHH
Q 005680          606 NDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKH-------KYLTPNHTLRSLIQEWH  675 (683)
Q Consensus       606 s~~Ps~f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~-------~~l~PN~~lr~~I~~w~  675 (683)
                      ......+.|||-.+.+.+|++.+-|++|-+..|..|+..+..++|+-+.++..       ..+.+|..|...|+.|.
T Consensus        10 ~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~   86 (115)
T 3l11_A           10 IPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY   86 (115)
T ss_dssp             CCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred             cCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence            34456789999999999999999999999999999998878899999998863       77889999999999986

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.06  E-value=0.012  Score=46.56  Aligned_cols=57  Identities=12%  Similarity=0.184  Sum_probs=50.4

Q ss_pred             CCCCCccccccccccccCCCcccCCCcchhhHHHHHHHcCCCCCCCCCccccCCCCC
Q 005680          605 SNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYL  661 (683)
Q Consensus       605 ss~~Ps~f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l  661 (683)
                      ....+..+.|||-.+.+.+|+.++-|++|-+..|..|+..+..++|+-+.++....+
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i   65 (66)
T 2ecy_A            9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV   65 (66)
T ss_dssp             CCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred             hhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence            445677899999999999999999999999999999997677899999999877654

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.05  E-value=0.0017  Score=53.88  Aligned_cols=67  Identities=18%  Similarity=0.375  Sum_probs=58.7

Q ss_pred             CCCCCccccccccccccCCCcccCCCcchhhHHHHHHHcC-----CCCCCCCCccccCCCCCCCcHHHHHHH
Q 005680          605 SNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGM-----GHDTSPMTNLRLKHKYLTPNHTLRSLI  671 (683)
Q Consensus       605 ss~~Ps~f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~-----g~~tsP~T~~~l~~~~l~PN~~lr~~I  671 (683)
                      .......+.|||-.+.+.+|+..+-|++|-+..+..|+..     +..++|+-+.++....+.||+.|+..|
T Consensus        13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v   84 (85)
T 2ecv_A           13 LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIV   84 (85)
T ss_dssp             CCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCCC
T ss_pred             HHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHhh
Confidence            4556778999999999999999999999999999999864     478999999999999999999876543

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.03  E-value=0.0014  Score=54.43  Aligned_cols=67  Identities=19%  Similarity=0.321  Sum_probs=58.5

Q ss_pred             CCCCCccccccccccccCCCcccCCCcchhhHHHHHHHcC-----CCCCCCCCccccCCCCCCCcHHHHHHH
Q 005680          605 SNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGM-----GHDTSPMTNLRLKHKYLTPNHTLRSLI  671 (683)
Q Consensus       605 ss~~Ps~f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~-----g~~tsP~T~~~l~~~~l~PN~~lr~~I  671 (683)
                      .......+.|||-.+.+.+|++.+-|++|-+..|..|+..     +..++|+-+.++....+.||..|+..|
T Consensus        13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v   84 (85)
T 2ecw_A           13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV   84 (85)
T ss_dssp             CCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred             HHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence            4456778899999999999999999999999999999865     367899999999999999998876543

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=95.97  E-value=0.0056  Score=53.77  Aligned_cols=66  Identities=18%  Similarity=0.317  Sum_probs=59.1

Q ss_pred             cccccccccccCCCcccCCCcchhhHHHHHHHcCC--CCCCCCCccccCCCCCCCcHHHHHHHHHHHh
Q 005680          611 VFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMG--HDTSPMTNLRLKHKYLTPNHTLRSLIQEWHN  676 (683)
Q Consensus       611 ~f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~g--~~tsP~T~~~l~~~~l~PN~~lr~~I~~w~~  676 (683)
                      .+.|||-.+.+.+|++.+-|++|-+..|..|+..+  ..++|+-+.++....+.+|..+...|..+..
T Consensus        21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~   88 (112)
T 1jm7_A           21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK   88 (112)
T ss_dssp             HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred             CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence            46799999999999999999999999999999753  3589999999999999999999888888764

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=95.56  E-value=0.015  Score=47.29  Aligned_cols=64  Identities=20%  Similarity=0.281  Sum_probs=52.4

Q ss_pred             CCCCCCCCccccccccccccCCCcccC-CCcchhhHHHHHHHcC-CCCCCCCCcccc-CCCCCCCcH
Q 005680          602 KEDSNDVPSVFICPIFQEVMKTPHVAA-DGFSYELEAMEEWLGM-GHDTSPMTNLRL-KHKYLTPNH  665 (683)
Q Consensus       602 sesss~~Ps~f~cPIs~elm~dPvv~~-dG~TyEr~aI~~wl~~-g~~tsP~T~~~l-~~~~l~PN~  665 (683)
                      .......+..+.|||-.+.+.+|++.+ -|++|-+..|..|+.. +..++|+-+.++ ....+++|.
T Consensus         6 ~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~   72 (74)
T 2yur_A            6 SGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGPS   72 (74)
T ss_dssp             CSCCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCTT
T ss_pred             ccccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccCC
Confidence            334566788999999999999999999 7999999999999964 346899999984 456666663

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=95.51  E-value=0.0079  Score=52.13  Aligned_cols=70  Identities=17%  Similarity=0.233  Sum_probs=62.0

Q ss_pred             CccccccccccccCCCcc-cCCCcchhhHHHHHHHcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHhhc
Q 005680          609 PSVFICPIFQEVMKTPHV-AADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNKQ  678 (683)
Q Consensus       609 Ps~f~cPIs~elm~dPvv-~~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN~~lr~~I~~w~~~~  678 (683)
                      ...+.|||-.+.+.+|+. .+-|++|-+..|..|+..+..++|+-+.++....+++|..+...++....-.
T Consensus        20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~   90 (100)
T 3lrq_A           20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ   90 (100)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred             CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence            346789999999999999 9999999999999999876579999999999999999999988887766443

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=95.39  E-value=0.042  Score=60.14  Aligned_cols=161  Identities=7%  Similarity=0.032  Sum_probs=93.1

Q ss_pred             ccccCCceEEEEEEEC---------CeeEEEEEcCCCC-CHHHHHHHHHHHHhcC-CCCccceecccccceeEEEeecCC
Q 005680          344 LKCAGDWTNVYRGRLN---------HASVAIKTLNNGL-SEEDFQAKVSFLTAVR-HPHLVAVMGCCSELKCIVFEYMPN  412 (683)
Q Consensus       344 liG~G~fG~Vykg~~~---------g~~VAvK~l~~~~-~~~~~~~Ev~iL~~l~-HpnIV~l~g~~~~~~~LV~Ey~~g  412 (683)
                      .+.+|-...+|+....         +..|++++..... ..-...+|..+++.+. +.-..++++.+.  .++||+|++|
T Consensus        77 ~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~~~idR~~E~~~l~~L~~~gi~P~l~~~~~--~~~I~efI~G  154 (424)
T 3mes_A           77 QIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGKFYDSKVELDVFRYLSNINIAPNIIADFP--EGRIEEFIDG  154 (424)
T ss_dssp             EECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-CCCCHHHHHHHHHHHHHTTSSCCEEEEET--TEEEEECCCS
T ss_pred             EcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCcchhcCHHHHHHHHHHHHhcCCCCCEEEEcC--CCEEEEEeCC
Confidence            3445777889999885         6789999865321 1123467888888884 322345665443  4789999998


Q ss_pred             CCchhh-h-------------hhcccccc-----cc-cccccCCHHHHHHHHHHHH-------------------hhhhh
Q 005680          413 GNLRDK-L-------------FTSQRNYK-----NC-SRARALRWLDRIHIAHEVC-------------------LGLSF  453 (683)
Q Consensus       413 gsL~~~-L-------------~~~~~~~~-----~~-~~~~~L~~~~~~~I~~qIa-------------------~aL~y  453 (683)
                      .+|..- +             ..-+....     +. ....+..|..+.++..++-                   ..+.+
T Consensus       155 ~~l~~~~l~~~~~~~~ia~~La~LH~~~~~~~~L~~~~~~~p~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~e~~~  234 (424)
T 3mes_A          155 EPLTTKQLQLTHICVEVAKNMGSLHIINSKRADFPSRFDKEPILFKRIYLWREEAKIQVSKNNFQIDKELYSKILEEIDQ  234 (424)
T ss_dssp             EECCTGGGGSHHHHHHHHHHHHHHHTHHHHCTTSCTTSCCSCCHHHHHHHHHHHHHHHHHTCC--CCHHHHHHHHHHHHH
T ss_pred             ccCChhhcCCHHHHHHHHHHHHHHhcCchhhccCccccCCCCcHHHHHHHHHHHHHHhhcccchhhccccHHHHHHHHHH
Confidence            765321 1             00000000     00 0111122444444332221                   11222


Q ss_pred             hc---------------------cCCCCcEEeccCCCCcccccCCCcEEEecCCCccccCCCcccccccHHHHHHHHhhC
Q 005680          454 LH---------------------STEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVRSDIRAFGTLLLHLLTG  512 (683)
Q Consensus       454 LH---------------------~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~~~~t~ksDVwSlGviL~eLltG  512 (683)
                      |.                     ...+..++|+|+.+.||| +.++.+.|+||..|..+.     =.|-||.++.+...+
T Consensus       235 L~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~H~D~~~~N~l-~~~~~~~~IDwe~a~~~~-----~~~Dla~~~~~~~~~  308 (424)
T 3mes_A          235 LEELIMGGEKFSMERALELKLYSPAFSLVFAHNDLQENNLL-QTQNNIRMIDYEYSAINF-----AGADIANYFCEYIYD  308 (424)
T ss_dssp             HHHHHHTSSCCCHHHHHHHHTTCGGGCEEEECSCCCGGGEE-ECSSCEEECCCTTCEEEE-----HHHHHHHHHHTTTEE
T ss_pred             HHHHHhhhcccccccccccccccCCCCceEECCCCCcccee-cCCCcEEEEecccCCcCC-----hHHHHHHHHHHHHhh
Confidence            21                     122356999999999999 788899999999885432     246678777777633

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=95.36  E-value=0.026  Score=56.14  Aligned_cols=111  Identities=14%  Similarity=0.102  Sum_probs=76.1

Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      -||.++|.         ....+|++++++.++.|.+.+|.-+-... .+ ..+=+.|..|+|..+|.+-+.+ +.+..  
T Consensus        33 vSL~eIL~---------~~~~PlsEEqaWALc~Qc~~~L~~~~~~~-~~-~~~i~~~~~i~l~~dG~V~f~~-~~s~~~~  100 (229)
T 2yle_A           33 LSLEEILR---------LYNQPINEEQAWAVCYQCCGSLRAAARRR-QP-RHRVRSAAQIRVWRDGAVTLAP-AADDAGE  100 (229)
T ss_dssp             EEHHHHHH---------HHTSCCCHHHHHHHHHHHHHHHHHHHHTT-CC-CCCCCSGGGEEEETTSCEEECC-C------
T ss_pred             ccHHHHHH---------HcCCCcCHHHHHHHHHHHHHHHHhhhhcc-cC-CceecCCcceEEecCCceeccc-ccccccc
Confidence            47889885         45688999999999999999987762100 01 1223457899999999988874 22211  


Q ss_pred             -----c-----CCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhc
Q 005680          491 -----D-----QLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSA  559 (683)
Q Consensus       491 -----~-----~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~  559 (683)
                           .     ..+.+.=|||||++||.-+- |-++                        .-+..+++.|..||..|..-
T Consensus       101 ~~~~~pe~~~~~~te~~~IysLG~tLY~ALDygL~e------------------------~eE~eLS~~LE~LL~~Mt~~  156 (229)
T 2yle_A          101 PPPVAGKLGYSQCMETEVIESLGIIIYKALDYGLKE------------------------NEERELSPPLEQLIDHMANT  156 (229)
T ss_dssp             ------CCSSSSSCHHHHHHHHHHHHHHHHTTTCCT------------------------TEEECCCHHHHHHHHHHTTC
T ss_pred             cCCCChhhccccchHHHHHHHHHHHHHHHhhcCCCc------------------------ccchhhCHHHHHHHHHHHhc
Confidence                 1     22567789999999998876 2221                        22345678888888888766

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=95.24  E-value=0.0068  Score=53.86  Aligned_cols=68  Identities=10%  Similarity=0.137  Sum_probs=57.8

Q ss_pred             CCCccccccccccccCCCcccCCCcchhhHHHHHHHcCCCCCCCCCccccCCCCCC-CcHHHHHHHHHH
Q 005680          607 DVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLT-PNHTLRSLIQEW  674 (683)
Q Consensus       607 ~~Ps~f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~-PN~~lr~~I~~w  674 (683)
                      ..+..+.|||-.+.+.+|+.++-|++|-+..|..|+..+..++|+.+.++....+. |+..+.+.|..+
T Consensus        19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l   87 (116)
T 1rmd_A           19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSL   87 (116)
T ss_dssp             HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred             hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence            44567899999999999999999999999999999987678999999999877765 566777777654

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=94.90  E-value=0.0045  Score=57.39  Aligned_cols=68  Identities=15%  Similarity=0.280  Sum_probs=58.1

Q ss_pred             CCCCccccccccccccCCCcccCCCcchhhHHHHHHHcCCCCCCCCCcccc---------CCCCCCCcHHHHHHHHH
Q 005680          606 NDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRL---------KHKYLTPNHTLRSLIQE  673 (683)
Q Consensus       606 s~~Ps~f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~g~~tsP~T~~~l---------~~~~l~PN~~lr~~I~~  673 (683)
                      ..++..+.|||-.+++.+|+.++-|++|-+..|..|+..+..++|+-+.++         ....++|+..+++.|.+
T Consensus        26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~  102 (141)
T 3knv_A           26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES  102 (141)
T ss_dssp             GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred             ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence            456788999999999999999999999999999999987777899887754         34467799999998864

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.55  E-value=0.048  Score=43.87  Aligned_cols=61  Identities=7%  Similarity=0.145  Sum_probs=53.7

Q ss_pred             CCCCCCccccccccccccCCCccc-CCCcchhhHHHHHHHcCCCCCCCCCccccCCCCCCCcH
Q 005680          604 DSNDVPSVFICPIFQEVMKTPHVA-ADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNH  665 (683)
Q Consensus       604 sss~~Ps~f~cPIs~elm~dPvv~-~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN~  665 (683)
                      ........+.|||-.+.+.+|+.. +-|++|-...|..|+.. ..++|+-+.++....+++|.
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~   69 (72)
T 2djb_A            8 NLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSGP   69 (72)
T ss_dssp             CCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCCC
T ss_pred             hHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCcccccccC
Confidence            345667789999999999999987 99999999999999975 67999999999998888874

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=94.26  E-value=0.034  Score=51.02  Aligned_cols=63  Identities=19%  Similarity=0.238  Sum_probs=52.0

Q ss_pred             cccccccccccCCCcccCCCcchhhHHHHHHHcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHh
Q 005680          611 VFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHN  676 (683)
Q Consensus       611 ~f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN~~lr~~I~~w~~  676 (683)
                      .+.|||..+.+.+|++.+-|++|-...|..|+.. ..+||+-+.++....  +|..+...|..+..
T Consensus        53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~--~~~~~~~~i~~~~~  115 (138)
T 4ayc_A           53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSKT--YSLVLDNCINKMVN  115 (138)
T ss_dssp             HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCEE--ECHHHHHHHHHHHT
T ss_pred             cCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCCC--CccchhHHHHHHHH
Confidence            4679999999999999999999999999999975 679999999987542  46666666666543

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.88  E-value=0.17  Score=40.42  Aligned_cols=57  Identities=18%  Similarity=0.403  Sum_probs=49.0

Q ss_pred             CCCCCccccccccccccCCCcccCCCcchhhHHHHHHHc--CCCCCCCCCccccCCCCC
Q 005680          605 SNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLG--MGHDTSPMTNLRLKHKYL  661 (683)
Q Consensus       605 ss~~Ps~f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~--~g~~tsP~T~~~l~~~~l  661 (683)
                      .......+.|||-.+.+.+|++.+-|++|-+..|..|+.  .+..++|+-+.++....+
T Consensus        14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   72 (73)
T 2ysl_A           14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI   72 (73)
T ss_dssp             CCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred             HHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence            445677889999999999999999999999999999996  356799999998876554

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=91.95  E-value=11  Score=37.77  Aligned_cols=98  Identities=15%  Similarity=0.155  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhhhHHHHhhhcHHHHH---hHHHHHHHHHHHHHHHHHHHHH
Q 005680          161 TEFMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVA---SRMEIQRDLDSLKEQSCEVIRD  237 (683)
Q Consensus       161 ~~~l~~~~~e~~~~~~~~r~e~~~~~~r~~k~e~~~~~~~~~~~~~e~~~~~e~~---~r~e~e~~l~~~~~~~~~~~~~  237 (683)
                      ...+...+......+...+.+.+.......+.|.++..+..+++..+..+.. ++   .-..+...++.++.++..++..
T Consensus        34 l~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~-v~~~kE~~aL~kEie~~~~~i~~lE~e  112 (256)
T 3na7_A           34 LDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE-IKSERELRSLNIEEDIAKERSNQANRE  112 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444455555555555666666666666555544321 22   1233444455555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 005680          238 VEESKNRLSSLIELQSELSNKL  259 (683)
Q Consensus       238 ~~~~~~~~~~~~~~~~~l~~~~  259 (683)
                      +.+.+++...+......+...+
T Consensus       113 ile~~e~ie~~~~~l~~~~~~l  134 (256)
T 3na7_A          113 IENLQNEIKRKSEKQEDLKKEM  134 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555544444444444433

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=91.36  E-value=0.081  Score=42.08  Aligned_cols=58  Identities=17%  Similarity=0.260  Sum_probs=50.4

Q ss_pred             CCCccccccccccccCCC-------cccCCCcchhhHHHHHHHcCCCCCCCCCccccCCCCCCCcH
Q 005680          607 DVPSVFICPIFQEVMKTP-------HVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNH  665 (683)
Q Consensus       607 ~~Ps~f~cPIs~elm~dP-------vv~~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN~  665 (683)
                      .....+.|||-.+.+.+|       +..+-|++|-...|..|+.. +.++|+-+.++....+.|++
T Consensus         6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~   70 (71)
T 3ng2_A            6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY   70 (71)
T ss_dssp             CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCCC
T ss_pred             CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeecc
Confidence            345578899999999888       78899999999999999975 57999999999999988874

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=91.02  E-value=9.9  Score=35.36  Aligned_cols=20  Identities=10%  Similarity=0.037  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHH
Q 005680          161 TEFMKSKINEAREMIRLKKK  180 (683)
Q Consensus       161 ~~~l~~~~~e~~~~~~~~r~  180 (683)
                      ++.|..++++|++.+..+-.
T Consensus         2 ~~~lE~qlkeaae~ad~Kye   21 (155)
T 2efr_A            2 MKQLEDKVEELLSKNYHLEN   21 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHH
Confidence            45666777777544444443

>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}

Probab=90.80  E-value=0.76  Score=45.36  Aligned_cols=114  Identities=11%  Similarity=0.083  Sum_probs=78.6

Q ss_pred             CCCCccceecccccceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccC
Q 005680          388 RHPHLVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSL  467 (683)
Q Consensus       388 ~HpnIV~l~g~~~~~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDL  467 (683)
                      .||+.+..- +-.+.--+++.|-...+...+-           .-..++...+++++..|+....++++     -+|--|
T Consensus        43 ~~~~Fl~~~-I~e~eD~v~~~y~~~~~~~~f~-----------~ik~~~~~eKlr~l~ni~~l~~~~~~-----r~tf~L  105 (215)
T 4ann_A           43 HSPYFIDAE-LTELRDSFQIHYDINDNHTPFD-----------NIKSFTKNEKLRYLLNIKNLEEVNRT-----RYTFVL  105 (215)
T ss_dssp             CCTTBCCEE-EEECSSEEEEEECCCTTSEEGG-----------GGGGSCHHHHHHHHHHGGGGGGGGGS-----SEECCC
T ss_pred             cCCcccceE-EEEcccEEEEEEEcCcccCCHH-----------HHHhcCHHHHHHHHHHHHHHHHHhcC-----ceEEEE
Confidence            578887552 2222113333443333333332           33568889999999999999988876     578889


Q ss_pred             CCCcccccCCCcEEEecCCCccc-cCC--CcccccccHHHHHHHHhhCCCCchh
Q 005680          468 TPSSILLDRNLVAKISGLGLNIC-DQL--NVRSDIRAFGTLLLHLLTGRNWAGL  518 (683)
Q Consensus       468 KP~NILld~~~~~KL~DFGla~~-~~~--t~ksDVwSlGviL~eLltG~~Pf~~  518 (683)
                      .|+||+++.++.++|.-.|+... .++  +...=+-.+=+++..+++|+..|..
T Consensus       106 ~P~NL~f~~~~~p~i~~RGik~~l~P~~~~ee~fL~qyKAliiall~~K~~Fe~  159 (215)
T 4ann_A          106 APDELFFTRDGLPIAKTRGLQNVVDPLPVSEAEFLTRYKALVICAFNEKQSFDA  159 (215)
T ss_dssp             SGGGEEECTTSCEEESCCEETTTBSCCCCCHHHHHHHHHHHHHHHHCTTCCHHH
T ss_pred             ecceEEEcCCCCEEEEEccCccCCCCCCCCHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            99999999999999999987432 222  2222245788999999999888753

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.63  E-value=0.43  Score=36.04  Aligned_cols=47  Identities=15%  Similarity=0.328  Sum_probs=39.5

Q ss_pred             CCCCCccccccccccccCCCcccCCCcchhhHHHHHHHcC--CCCCCCC
Q 005680          605 SNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGM--GHDTSPM  651 (683)
Q Consensus       605 ss~~Ps~f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~--g~~tsP~  651 (683)
                      .......+.|||-.+.+.+|++.+-|++|-+..|..|+..  +..++|+
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~   57 (58)
T 2ecj_A            9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPV   57 (58)
T ss_dssp             SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSC
T ss_pred             hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCC
Confidence            3456678899999999999999999999999999999754  4566774

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=90.36  E-value=0.31  Score=52.52  Aligned_cols=47  Identities=11%  Similarity=0.071  Sum_probs=35.5

Q ss_pred             CcEEeccCCCCcccc------cCCCcEEEecCCCccccCCCcccccccHHHHHHHHhh
Q 005680          460 RPIVHGSLTPSSILL------DRNLVAKISGLGLNICDQLNVRSDIRAFGTLLLHLLT  511 (683)
Q Consensus       460 ~~IiHrDLKP~NILl------d~~~~~KL~DFGla~~~~~t~ksDVwSlGviL~eLlt  511 (683)
                      ..++|+|+.+.|||+      +.+..++++||.+|..+..     .|-||..+.|...
T Consensus       244 ~vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~n~~-----~fDlan~f~ew~~  296 (401)
T 3g15_A          244 VVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSYNYR-----GFDIGNHFCEWMY  296 (401)
T ss_dssp             EEEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEEEEH-----HHHHHHHHHHTTE
T ss_pred             eeeEEecCCCCeEEEecCcccCcCCeEEEechHhccCCCc-----hHhHHHHHHHHhc
Confidence            346899999999999      4567899999998865422     4557777777653

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=90.05  E-value=0.21  Score=39.14  Aligned_cols=55  Identities=15%  Similarity=0.192  Sum_probs=47.8

Q ss_pred             ccccccccc-ccCCCc----ccCCCcchhhHHHHHHHcCCCCCCCCCccccCCCCCCCcH
Q 005680          611 VFICPIFQE-VMKTPH----VAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNH  665 (683)
Q Consensus       611 ~f~cPIs~e-lm~dPv----v~~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN~  665 (683)
                      .+.|||-.+ .+.+|+    +.+-|++|-...|..|+..+..++|+-+.++....+.|+.
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~   62 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQL   62 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEEC
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeec
Confidence            567999999 888994    6799999999999999877778899999999988888763

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.88  E-value=0.25  Score=40.92  Aligned_cols=64  Identities=22%  Similarity=0.320  Sum_probs=51.0

Q ss_pred             CCCCCCccccccccccccCC----CcccCCCcchhhHHHHHHHcCC--CCCCCCCccccCC---CCCCCcHHH
Q 005680          604 DSNDVPSVFICPIFQEVMKT----PHVAADGFSYELEAMEEWLGMG--HDTSPMTNLRLKH---KYLTPNHTL  667 (683)
Q Consensus       604 sss~~Ps~f~cPIs~elm~d----Pvv~~dG~TyEr~aI~~wl~~g--~~tsP~T~~~l~~---~~l~PN~~l  667 (683)
                      ........+.|||-.+.+.+    |++.+-|++|-...|..|+..+  ..++|+-+.++..   ..|.+|+.+
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~~n~~~   80 (88)
T 2ct2_A            8 NLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLTDNLTV   80 (88)
T ss_dssp             SCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSEECTTT
T ss_pred             ChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHHHHHHH
Confidence            34556678899999999999    9999999999999999999753  5789998887654   345555543

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=89.32  E-value=16  Score=35.10  Aligned_cols=130  Identities=14%  Similarity=0.138  Sum_probs=77.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHhhhhhH-HHHhhhcHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005680          160 RTEFMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRA-DQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDV  238 (683)
Q Consensus       160 ~~~~l~~~~~e~~~~~~~~r~e~~~~~~r~~k~e~~~~~~~~~~-~~~e~~~~~e~~~r~e~e~~l~~~~~~~~~~~~~~  238 (683)
                      .+..|..-+++.+...+.--.+-+...++..|..++...-+.++ .+++.+..+=-....+.......++.++..++...
T Consensus        25 ~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~  104 (189)
T 2v71_A           25 SFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIK  104 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444455555555555555555554444444443332222 23333322222233344445667777777777778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005680          239 EESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEE  289 (683)
Q Consensus       239 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~e~  289 (683)
                      +..+.+++++......++.+........+..+..+..+....+-+..|+++
T Consensus       105 ~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E  155 (189)
T 2v71_A          105 EQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE  155 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888777766666666666554

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.14  E-value=0.39  Score=37.19  Aligned_cols=47  Identities=21%  Similarity=0.453  Sum_probs=40.1

Q ss_pred             CCCCCccccccccccccCCCcccCCCcchhhHHHHHHHcC--CCCCCCC
Q 005680          605 SNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGM--GHDTSPM  651 (683)
Q Consensus       605 ss~~Ps~f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~--g~~tsP~  651 (683)
                      .......+.|||-.+.+.+|++.+-|++|-+..|..|+..  +..++|+
T Consensus        14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~   62 (63)
T 2ysj_A           14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPL   62 (63)
T ss_dssp             CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSC
T ss_pred             HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcC
Confidence            4456778899999999999999999999999999999963  4557774

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=88.68  E-value=0.54  Score=38.02  Aligned_cols=60  Identities=20%  Similarity=0.322  Sum_probs=49.4

Q ss_pred             CCCCCccccccccccccCCCcc---cCCCcchhhHHHHHHHcCCCCCCCCCccccCCCCCCCcH
Q 005680          605 SNDVPSVFICPIFQEVMKTPHV---AADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNH  665 (683)
Q Consensus       605 ss~~Ps~f~cPIs~elm~dPvv---~~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN~  665 (683)
                      .........|||-.+.+.++..   .+-|+.|-...|..|+.. +.++|+-+.++....+.||.
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~   71 (78)
T 2ect_A            9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATNP   71 (78)
T ss_dssp             CTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCCC
T ss_pred             cccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCCC
Confidence            3445567889999999887744   489999999999999975 58999999999988888763

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=88.40  E-value=19  Score=48.45  Aligned_cols=20  Identities=15%  Similarity=0.493  Sum_probs=9.9

Q ss_pred             hhhh-hHHHHHHHHHHHhcCCCC
Q 005680          105 TWEN-CVQEIEIYFQHLASFNLD  126 (683)
Q Consensus       105 ~~~~-~~~~~~~~~~~~~~~~~~  126 (683)
                      .|-. .+..+-+.|  |..++|+
T Consensus      1812 ~Wp~eAL~~Va~~f--l~~~~l~ 1832 (3245)
T 3vkg_A         1812 EWSPEALFQVGSEF--TRNLDLE 1832 (3245)
T ss_dssp             SCCHHHHHHHHHHH--TTTSCCC
T ss_pred             CCCHHHHHHHHHHH--Hhhcccc
Confidence            4643 455565544  4445554

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.06  E-value=0.4  Score=38.19  Aligned_cols=53  Identities=8%  Similarity=0.029  Sum_probs=45.4

Q ss_pred             CCCCCccccccccccccCCCcccCCCcchhhHHHHHHHcCCCCCCCCCccccCC
Q 005680          605 SNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKH  658 (683)
Q Consensus       605 ss~~Ps~f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~  658 (683)
                      .......+.|||-.+.+.+|+..+-|++|-...|..|+.. ..++|+-+.++..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~   61 (71)
T 2d8t_A            9 TAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE   61 (71)
T ss_dssp             CCSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred             cccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence            3345567889999999999999999999999999999976 4799999888754

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=87.86  E-value=28  Score=47.06  Aligned_cols=7  Identities=0%  Similarity=0.074  Sum_probs=2.8

Q ss_pred             EEEecCC
Q 005680          480 AKISGLG  486 (683)
Q Consensus       480 ~KL~DFG  486 (683)
                      +.|++|.
T Consensus      2296 vtlINFt 2302 (3245)
T 3vkg_A         2296 VTFVNFT 2302 (3245)
T ss_dssp             SEEEECC
T ss_pred             eEEEEEE
Confidence            3344443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=87.38  E-value=11  Score=42.06  Aligned_cols=7  Identities=14%  Similarity=0.297  Sum_probs=3.3

Q ss_pred             hHHhhhc
Q 005680           73 LWTKMFS   79 (683)
Q Consensus        73 ~~~~~~~   79 (683)
                      ++..+|.
T Consensus       361 ~~~~~~~  367 (597)
T 3oja_B          361 SLRALFR  367 (597)
T ss_dssp             HHHHHTT
T ss_pred             hHHHHHH
Confidence            4444544

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=86.78  E-value=12  Score=45.58  Aligned_cols=10  Identities=10%  Similarity=0.275  Sum_probs=5.6

Q ss_pred             ecCeEeeecc
Q 005680           37 CGGKLVSLKG   46 (683)
Q Consensus        37 ~~~~~~~~~~   46 (683)
                      +|=..||+|-
T Consensus       744 ~G~TKVF~r~  753 (1080)
T 2dfs_A          744 FGKTKIFFRA  753 (1080)
T ss_dssp             ECSSEEEECT
T ss_pred             eccccchhcc
Confidence            4555666663

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.88  E-value=0.49  Score=37.00  Aligned_cols=53  Identities=15%  Similarity=0.245  Sum_probs=45.1

Q ss_pred             CCCCCccccccccccccCCC-------cccCCCcchhhHHHHHHHcCCCCCCCCCccccCC
Q 005680          605 SNDVPSVFICPIFQEVMKTP-------HVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKH  658 (683)
Q Consensus       605 ss~~Ps~f~cPIs~elm~dP-------vv~~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~  658 (683)
                      ....+..+.|||-.+.+.+|       +..+-|++|-...|..|+.. ..++|+-+.++..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   68 (69)
T 2ea6_A            9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH   68 (69)
T ss_dssp             CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred             ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence            44566788999999998888       77899999999999999975 6799999888764

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=84.66  E-value=18  Score=30.99  Aligned_cols=25  Identities=12%  Similarity=0.135  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005680          220 IQRDLDSLKEQSCEVIRDVEESKNR  244 (683)
Q Consensus       220 ~e~~l~~~~~~~~~~~~~~~~~~~~  244 (683)
                      .+..+..+..+++.++.+++.....
T Consensus        42 ~E~Ei~sL~kk~~~lE~eld~~ee~   66 (101)
T 3u1c_A           42 LEDDIVQLEKQLRVTEDSRDQVLEE   66 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444444444444433333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=84.38  E-value=19  Score=39.20  Aligned_cols=36  Identities=19%  Similarity=0.198  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005680          239 EESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLE  274 (683)
Q Consensus       239 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~  274 (683)
                      +..+++.+.+.+....++.-+++.....+++.+.+.
T Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (487)
T 3oja_A          438 DMYQHKETQLAEENARLKKLNGEADLALASANATLQ  473 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHH
Confidence            333444444444444444444444444444444333

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=84.35  E-value=0.21  Score=38.52  Aligned_cols=54  Identities=19%  Similarity=0.297  Sum_probs=46.1

Q ss_pred             cccccccccccCCC-------cccCCCcchhhHHHHHHHcCCCCCCCCCccccCCCCCCCcH
Q 005680          611 VFICPIFQEVMKTP-------HVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNH  665 (683)
Q Consensus       611 ~f~cPIs~elm~dP-------vv~~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN~  665 (683)
                      .+.|||-.+.+.+|       +..+-|++|-...|..|+.. ..++|+-+.++....+.|++
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~   63 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY   63 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEECC
T ss_pred             CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeeee
Confidence            46788888888877       77899999999999999976 67999999999988877653

>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}

Probab=83.17  E-value=2.7  Score=41.54  Aligned_cols=113  Identities=14%  Similarity=0.104  Sum_probs=77.3

Q ss_pred             CCCCccceecccccceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhh-hhccCCCCcEEecc
Q 005680          388 RHPHLVAVMGCCSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLS-FLHSTEPRPIVHGS  466 (683)
Q Consensus       388 ~HpnIV~l~g~~~~~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~-yLH~~~~~~IiHrD  466 (683)
                      .||++..-+..-.+.+.+.++.-+++  ..+-           .-..++...+++++..|+.... +++.     -+|--
T Consensus        48 ~~~~f~~~I~~~eD~~~i~y~~~~~~--~~f~-----------~i~~~~~~eKlrll~nl~~L~~~~~~~-----r~tf~  109 (219)
T 4ano_A           48 VDPCIVRDIDVSEDEVKVVIKPPSSF--LTFA-----------AIRKTTLLSRIRAAIHLVSKVKHHSAR-----RLIFI  109 (219)
T ss_dssp             SCSSSEEEEEECSSEEEEEEECCTTC--EEHH-----------HHHTSCHHHHHHHHHHHHHHHSSCCSS-----SEECC
T ss_pred             cCCCCCeEEEEeCCEEEEEEEcCccc--CcHH-----------HHHhcCHHHHHHHHHHHHHHHHHhhhC-----ceeEE
Confidence            67877333333344555555544332  2221           2245788999999999999888 7777     67888


Q ss_pred             CCCCcccccCCCcEEEecCCCccc-cCCC-cccc-cccHHHHHHHHhhCCCCchh
Q 005680          467 LTPSSILLDRNLVAKISGLGLNIC-DQLN-VRSD-IRAFGTLLLHLLTGRNWAGL  518 (683)
Q Consensus       467 LKP~NILld~~~~~KL~DFGla~~-~~~t-~ksD-VwSlGviL~eLltG~~Pf~~  518 (683)
                      |.|+||++|.++.++|.-.|+-.. .++. ...| +-.+=+++..++.++..|..
T Consensus       110 l~P~NL~f~~~~~p~i~hRGi~~~lpP~e~~ee~fl~qyKali~all~~K~~Fe~  164 (219)
T 4ano_A          110 VCPENLMFNRALEPFFLHVGVKESLPPDEWDDERLLREVKATVLALTEGEYRFDE  164 (219)
T ss_dssp             CCGGGEEECTTCCEEESCCEETTTBSSCSCCHHHHHHHHHHHHHHHTTCSSCHHH
T ss_pred             EeCceEEEeCCCcEEEEEcCCcccCCCCCCCHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            999999999999999999997533 2222 1123 34788889999999877753

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=82.33  E-value=33  Score=41.69  Aligned_cols=24  Identities=25%  Similarity=0.173  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHhHHHhHHHH
Q 005680          163 FMKSKINEAREMIRLKKKETKDDA  186 (683)
Q Consensus       163 ~l~~~~~e~~~~~~~~r~e~~~~~  186 (683)
                      .|..++.+-+..++...++...+.
T Consensus       925 ~LE~kl~eLq~rL~~~e~~n~~L~  948 (1080)
T 2dfs_A          925 GLENKIMQLQRKIDEQNKEYKSLL  948 (1080)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555554444433333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	683
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	3e-31
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	8e-31
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	2e-28
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	1e-26
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	9e-26
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	1e-25
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	2e-25
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	2e-25
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	8e-25
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	9e-25
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	2e-24
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	2e-24
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	2e-23
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	2e-23
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	3e-23
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	8e-23
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	8e-23
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	1e-22
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	1e-22
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	4e-22
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	4e-22
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	5e-22
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	1e-21
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	2e-21
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	2e-21
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	2e-20
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	4e-20
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	6e-20
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	2e-19
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	2e-19
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	2e-19
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	3e-19
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	4e-19
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	4e-18
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	1e-17
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	2e-17
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	3e-17
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	3e-17
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	5e-17
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	1e-16
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-16
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	6e-16
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	2e-15
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	6e-14
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	2e-13
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	3e-13
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	7e-13
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	8e-13
d2c2la2	80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	3e-12
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	4e-12
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	4e-12
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	8e-12
d1wgma_	98	g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu	2e-11
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	2e-11
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	3e-11
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	3e-11
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	4e-11
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	1e-10
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	7e-10
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	8e-10
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-09
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	1e-09
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	5e-09
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	1e-06
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	4e-06
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	3e-04

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (303), Expect = 3e-31
 Identities = 56/254 (22%), Positives = 96/254 (37%), Gaps = 42/254 (16%)

Query: 353 VYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK---CIVFEY 409
           V  G      VA+K + N  + + F A+ S +T +RH +LV ++G   E K    IV EY
Sbjct: 23  VMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 82

Query: 410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTP 469
           M  G+L D L +  R          L     +  + +VC  + +L        VH  L  
Sbjct: 83  MAKGSLVDYLRSRGR--------SVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAA 131

Query: 470 SSILLDRNLVAKISGLGLNIC----------------------DQLNVRSDIRAFGTLLL 507
            ++L+  + VAK+S  GL                          + + +SD+ +FG LL 
Sbjct: 132 RNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLW 191

Query: 508 HLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDL 567
            + +     G V       +  + +V  G     P      +  +   C     DA    
Sbjct: 192 EIYSF----GRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYEVMKNCWH--LDAAMRP 245

Query: 568 RIAGVMKELDEVRK 581
               + ++L+ ++ 
Sbjct: 246 SFLQLREQLEHIKT 259

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (300), Expect = 8e-31
 Identities = 48/264 (18%), Positives = 94/264 (35%), Gaps = 50/264 (18%)

Query: 353 VYRGRLNHASVAIKTLN----NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVF 407
           VY+G+  H  VA+K LN         + F+ +V  L   RH +++  MG  +     IV 
Sbjct: 24  VYKGKW-HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVT 82

Query: 408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSL 467
           ++    +L   L   +              +  I IA +   G+ +LH    + I+H  L
Sbjct: 83  QWCEGSSLYHHLHIIETK---------FEMIKLIDIARQTAQGMDYLH---AKSIIHRDL 130

Query: 468 TPSSILLDRNLVAKISGLGL------------------------------NICDQLNVRS 497
             ++I L  +L  KI   GL                                 +  + +S
Sbjct: 131 KSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQS 190

Query: 498 DIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCL 557
           D+ AFG +L  L+TG+     +     +        L  +      +  + +  +  +CL
Sbjct: 191 DVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECL 250

Query: 558 SADQDANRDLRIAGVMKELDEVRK 581
              +  +       ++  ++ + +
Sbjct: 251 K--KKRDERPLFPQILASIELLAR 272

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 2e-28
 Identities = 54/255 (21%), Positives = 98/255 (38%), Gaps = 46/255 (18%)

Query: 353 VYRGRLN-HASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK-CIVFEY 409
           V+ G  N H  VA+K+L  G +S + F A+ + +  ++H  LV +    ++    I+ EY
Sbjct: 29  VWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEY 88

Query: 410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTP 469
           M NG+L D L T             L     + +A ++  G++F+     R  +H  L  
Sbjct: 89  MENGSLVDFLKTPSG--------IKLTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRA 137

Query: 470 SSILLDRNLVAKISGLGLNI--------------------------CDQLNVRSDIRAFG 503
           ++IL+   L  KI+  GL                                 ++SD+ +FG
Sbjct: 138 ANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFG 197

Query: 504 TLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDA 563
            LL  ++T     G +      +   +  +  G   + P +  EEL  +   C    +  
Sbjct: 198 ILLTEIVTH----GRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWK--ERP 251

Query: 564 NRDLRIAGVMKELDE 578
                   +   L++
Sbjct: 252 EDRPTFDYLRSVLED 266

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (271), Expect = 1e-26
 Identities = 58/308 (18%), Positives = 113/308 (36%), Gaps = 70/308 (22%)

Query: 329 EDIRLATEDFSERFRLKC--------AGDWTNVYRGRL-----NHASVAIKTLNNGLSE- 374
           ED   A  +F++   + C        AG++  V  G L         VAIKTL +G +E 
Sbjct: 10  EDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEK 69

Query: 375 --EDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRDKLFTSQRNYKNCS 430
              DF ++ S +    HP+++ + G  ++     I+ E+M NG+L               
Sbjct: 70  QRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLD---------SFLRQ 120

Query: 431 RARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL--- 487
                  +  + +   +  G+ +L        VH  L   +IL++ NLV K+S  GL   
Sbjct: 121 NDGQFTVIQLVGMLRGIAAGMKYLA---DMNYVHRDLAARNILVNSNLVCKVSDFGLSRF 177

Query: 488 ---------------------------NICDQLNVRSDIRAFGTLLLHLLTG--RNWAGL 518
                                          +    SD+ ++G ++  +++   R +  +
Sbjct: 178 LEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDM 237

Query: 519 VEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDE 578
             + +      +  +        P+D    L  + L C    +D N   +   ++  LD+
Sbjct: 238 TNQDV------INAIEQDYRLPPPMDCPSALHQLMLDCW--QKDRNHRPKFGQIVNTLDK 289

Query: 579 VRKKADGL 586
           + +  + L
Sbjct: 290 MIRNPNSL 297

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 9e-26
 Identities = 50/257 (19%), Positives = 95/257 (36%), Gaps = 48/257 (18%)

Query: 353 VYRGRL-NHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFE 408
           V  G+      VAIK +  G +SE++F  +   +  + H  LV + G C++ +   I+ E
Sbjct: 20  VKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITE 79

Query: 409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLT 468
           YM NG L + L                +    + +  +VC  + +L     +  +H  L 
Sbjct: 80  YMANGCLLNYL---------REMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLA 127

Query: 469 PSSILLDRNLVAKISGLGLNIC--------------------------DQLNVRSDIRAF 502
             + L++   V K+S  GL+                             + + +SDI AF
Sbjct: 128 ARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAF 187

Query: 503 GTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQD 562
           G L+  + +     G +      +  T   +  G     P   +E++  I   C    + 
Sbjct: 188 GVLMWEIYSL----GKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWH--EK 241

Query: 563 ANRDLRIAGVMKELDEV 579
           A+       ++  + +V
Sbjct: 242 ADERPTFKILLSNILDV 258

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 1e-25
 Identities = 55/259 (21%), Positives = 101/259 (38%), Gaps = 48/259 (18%)

Query: 353 VYRGRL-NHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFE 408
           V+ G   N   VAIKT+  G +SEEDF  +   +  + HP LV + G C E    C+VFE
Sbjct: 21  VHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFE 80

Query: 409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLT 468
           +M +G L D L T +  +              + +  +VC G+++L       ++H  L 
Sbjct: 81  FMEHGCLSDYLRTQRGLFA---------AETLLGMCLDVCEGMAYLEE---ACVIHRDLA 128

Query: 469 PSSILLDRNLVAKISGLGLNIC--------------------------DQLNVRSDIRAF 502
             + L+  N V K+S  G+                              + + +SD+ +F
Sbjct: 129 ARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSF 188

Query: 503 GTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQD 562
           G L+  + +     G +      +   +  +  G     P   +  +  I   C    + 
Sbjct: 189 GVLMWEVFSE----GKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCW--KER 242

Query: 563 ANRDLRIAGVMKELDEVRK 581
                  + ++++L E+ +
Sbjct: 243 PEDRPAFSRLLRQLAEIAE 261

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (261), Expect = 2e-25
 Identities = 52/274 (18%), Positives = 116/274 (42%), Gaps = 51/274 (18%)

Query: 353 VYRGRLNHAS--VAIKTLN-NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVF 407
           VY G     S  VA+KTL  + +  E+F  + + +  ++HP+LV ++G C+      I+ 
Sbjct: 33  VYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIT 92

Query: 408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSL 467
           E+M  GNL D L    R        + +  +  +++A ++   + +L     +  +H  L
Sbjct: 93  EFMTYGNLLDYLRECNR--------QEVSAVVLLYMATQISSAMEYLEK---KNFIHRDL 141

Query: 468 TPSSILLDRNLVAKISGLGLNI--------------------------CDQLNVRSDIRA 501
              + L+  N + K++  GL+                            ++ +++SD+ A
Sbjct: 142 AARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWA 201

Query: 502 FGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGI-WPLDLAEELAGIALKCLSAD 560
           FG LL  + T             +D + + ++L+ +  +  P    E++  +   C    
Sbjct: 202 FGVLLWEIATYGMSP-----YPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQ-- 254

Query: 561 QDANRDLRIAGVMKELDEVRKKADGLADKRESEV 594
            + +     A + +  + + +++  ++D+ E E+
Sbjct: 255 WNPSDRPSFAEIHQAFETMFQESS-ISDEVEKEL 287

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 2e-25
 Identities = 64/253 (25%), Positives = 102/253 (40%), Gaps = 47/253 (18%)

Query: 340 ERFRLKC---AGDWTNVYRGRLNHAS-VAIKTLNNG-LSEEDFQAKVSFLTAVRHPHLVA 394
           E  RL+     G +  V+ G  N  + VAIKTL  G +S E F  +   +  +RH  LV 
Sbjct: 17  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQ 76

Query: 395 VMGCCS-ELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSF 453
           +    S E   IV EYM  G+L D        +      + LR    + +A ++  G+++
Sbjct: 77  LYAVVSEEPIYIVTEYMSKGSLLD--------FLKGETGKYLRLPQLVDMAAQIASGMAY 128

Query: 454 LHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL-------------------------- 487
           +        VH  L  ++IL+  NLV K++  GL                          
Sbjct: 129 VE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEA 185

Query: 488 NICDQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAE 547
            +  +  ++SD+ +FG LL  L T     G V     +++  L QV  G     P +  E
Sbjct: 186 ALYGRFTIKSDVWSFGILLTELTTK----GRVPYPGMVNREVLDQVERGYRMPCPPECPE 241

Query: 548 ELAGIALKCLSAD 560
            L  +  +C   +
Sbjct: 242 SLHDLMCQCWRKE 254

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 8e-25
 Identities = 55/272 (20%), Positives = 107/272 (39%), Gaps = 53/272 (19%)

Query: 353 VYRGRLNHAS----VAIKTLNNGLSEED---FQAKVSFLTAV-RHPHLVAVMGCC--SEL 402
           V + R+         AIK +    S++D   F  ++  L  +  HP+++ ++G C     
Sbjct: 26  VLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGY 85

Query: 403 KCIVFEYMPNGNLRDKLFTSQRNYKNC------SRARALRWLDRIHIAHEVCLGLSFLHS 456
             +  EY P+GNL D L  S+    +       S A  L     +H A +V  G+ +L  
Sbjct: 86  LYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ 145

Query: 457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNV--------------------- 495
              +  +H  L   +IL+  N VAKI+  GL+   ++ V                     
Sbjct: 146 ---KQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSV 202

Query: 496 ---RSDIRAFGTLLLHLLTGRN--WAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELA 550
               SD+ ++G LL  +++     + G+    +        ++  G     PL+  +E+ 
Sbjct: 203 YTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAEL------YEKLPQGYRLEKPLNCDDEVY 256

Query: 551 GIALKCLSADQDANRDLRIAGVMKELDEVRKK 582
            +  +C    +        A ++  L+ + ++
Sbjct: 257 DLMRQCWR--EKPYERPSFAQILVSLNRMLEE 286

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 9e-25
 Identities = 44/244 (18%), Positives = 80/244 (32%), Gaps = 52/244 (21%)

Query: 353 VYRGRLNHAS----VAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCSELK-C 404
           V +G          VAIK L  G  +   E+   +   +  + +P++V ++G C      
Sbjct: 25  VRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALM 84

Query: 405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVH 464
           +V E    G L   L           +   +   +   + H+V +G+ +L     +  VH
Sbjct: 85  LVMEMAGGGPLHKFLV---------GKREEIPVSNVAELLHQVSMGMKYLE---EKNFVH 132

Query: 465 GSLTPSSILLDRNLVAKISGLGLNIC----------------------------DQLNVR 496
             L   ++LL     AKIS  GL+                               + + R
Sbjct: 133 RDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSR 192

Query: 497 SDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKC 556
           SD+ ++G  +   L+         K   +    +  +  G     P +   EL  +   C
Sbjct: 193 SDVWSYGVTMWEALSYGQKPYKKMKGPEV----MAFIEQGKRMECPPECPPELYALMSDC 248

Query: 557 LSAD 560
               
Sbjct: 249 WIYK 252

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 2e-24
 Identities = 46/265 (17%), Positives = 86/265 (32%), Gaps = 48/265 (18%)

Query: 353 VYRGRLNHAS-------VAIKTLNNGLSEED---FQAKVSFLTAVRHPHLVAVMGCCS-- 400
           VY G             VAIKT+N   S  +   F  + S +      H+V ++G  S  
Sbjct: 36  VYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQG 95

Query: 401 ELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPR 460
           +   ++ E M  G+L+  L + +    N            I +A E+  G+++L++    
Sbjct: 96  QPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNA---N 152

Query: 461 PIVHGSLTPSSILLDRNLVAKISGLGLNIC---------------------------DQL 493
             VH  L   + ++  +   KI   G+                                 
Sbjct: 153 KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVF 212

Query: 494 NVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIA 553
              SD+ +FG +L  + T             +    L  V++G     P +  + L  + 
Sbjct: 213 TTYSDVWSFGVVLWEIATLAEQPYQGLSNEQV----LRFVMEGGLLDKPDNCPDMLFELM 268

Query: 554 LKCLSADQDANRDLRIAGVMKELDE 578
             C     +         ++  + E
Sbjct: 269 RMCW--QYNPKMRPSFLEIISSIKE 291

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  101 bits (253), Expect = 2e-24
 Identities = 58/261 (22%), Positives = 100/261 (38%), Gaps = 60/261 (22%)

Query: 353 VYRGRLNHAS-------VAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSEL 402
           V++ R            VA+K L    S   + DFQ + + +    +P++V ++G C+  
Sbjct: 29  VFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVG 88

Query: 403 K--CIVFEYMPNGNLRDKLFT--------------SQRNYKNCSRARALRWLDRIHIAHE 446
           K  C++FEYM  G+L + L +              S R   +      L   +++ IA +
Sbjct: 89  KPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQ 148

Query: 447 VCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---------------- 490
           V  G+++L     R  VH  L   + L+  N+V KI+  GL+                  
Sbjct: 149 VAAGMAYLSE---RKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIP 205

Query: 491 -----------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG 539
                      ++    SD+ A+G +L  + +     GL        +  +  V DGN  
Sbjct: 206 IRWMPPESIFYNRYTTESDVWAYGVVLWEIFSY----GLQPYYGMAHEEVIYYVRDGNIL 261

Query: 540 IWPLDLAEELAGIALKCLSAD 560
             P +   EL  +   C S  
Sbjct: 262 ACPENCPLELYNLMRLCWSKL 282

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.3 bits (244), Expect = 2e-23
 Identities = 51/265 (19%), Positives = 94/265 (35%), Gaps = 53/265 (20%)

Query: 353 VYRGRLNH-----ASVAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCSE-LK 403
           V++G          +VAIKT  N  S+   E F  +   +    HPH+V ++G  +E   
Sbjct: 23  VHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPV 82

Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
            I+ E    G LR              R  +L     I  A+++   L++L S   +  V
Sbjct: 83  WIIMELCTLGELRS---------FLQVRKYSLDLASLILYAYQLSTALAYLES---KRFV 130

Query: 464 HGSLTPSSILLDRNLVAKISGLGLNI--------------------------CDQLNVRS 497
           H  +   ++L+  N   K+   GL+                             +    S
Sbjct: 131 HRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSAS 190

Query: 498 DIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCL 557
           D+  FG  +  +L      G+       +   + ++ +G     P +    L  +  KC 
Sbjct: 191 DVWMFGVCMWEILMH----GVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCW 246

Query: 558 SADQDANRDLRIAGVMKELDEVRKK 582
           +   D +R  R   +  +L  + ++
Sbjct: 247 A--YDPSRRPRFTELKAQLSTILEE 269

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.8 bits (245), Expect = 2e-23
 Identities = 44/295 (14%), Positives = 90/295 (30%), Gaps = 76/295 (25%)

Query: 353 VYRGRLNHASVAIKTLN-NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK------CI 405
           V+RG+     VA+K  +         +A++     +RH +++  +   ++         +
Sbjct: 19  VWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWL 78

Query: 406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS-----TEPR 460
           V +Y  +G+L D L               +     I +A     GL+ LH          
Sbjct: 79  VSDYHEHGSLFDYL-----------NRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKP 127

Query: 461 PIVHGSLTPSSILLDRNLVAKISGLGLNICD----------------------------- 491
            I H  L   +IL+ +N    I+ LGL +                               
Sbjct: 128 AIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDS 187

Query: 492 ------QLNVRSDIRAFGTLLLHLLTGRNWAGLVE------KAMALDQTTLMQVLDGNAG 539
                 +   R+DI A G +   +    +  G+ E        +     ++ ++      
Sbjct: 188 INMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCE 247

Query: 540 ----------IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKAD 584
                         +    +A I  +C     +    L    + K L ++ ++  
Sbjct: 248 QKLRPNIPNRWQSCEALRVMAKIMRECW--YANGAARLTALRIKKTLSQLSQQEG 300

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 98.9 bits (246), Expect = 3e-23
 Identities = 45/263 (17%), Positives = 83/263 (31%), Gaps = 57/263 (21%)

Query: 336 EDFSERFR-LKC--AGDWTNVYRGRL--NHASVAIKTLNNGLSE-----EDFQAKVSFLT 385
           +D  + F  L+    G +  VY  R   N   VAIK ++    +     +D   +V FL 
Sbjct: 11  DDPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQ 70

Query: 386 AVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHI 443
            +RHP+ +   GC        +V EY             +           L+ ++   +
Sbjct: 71  KLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKP----------LQEVEIAAV 120

Query: 444 AHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL---------------- 487
            H    GL++LHS     ++H  +   +ILL    + K+   G                 
Sbjct: 121 THGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGTPYW 177

Query: 488 --------NICDQLNVRSDIRAFGTLLLHLLTGRN-WAGLVEKAMALDQTTLMQVLDGNA 538
                       Q + + D+ + G   + L   +     +   +       L  +    +
Sbjct: 178 MAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSA------LYHIAQNES 231

Query: 539 -GIWPLDLAEELAGIALKCLSAD 560
             +     +E        CL   
Sbjct: 232 PALQSGHWSEYFRNFVDSCLQKI 254

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.6 bits (240), Expect = 8e-23
 Identities = 42/246 (17%), Positives = 82/246 (33%), Gaps = 50/246 (20%)

Query: 353 VYRGRL--NHASVAIKTLN----NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK--- 403
             + R   +   +  K L+        ++   ++V+ L  ++HP++V       +     
Sbjct: 20  CQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTT 79

Query: 404 -CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLH--STEPR 460
             IV EY   G+L   +    +  +       L     + +  ++ L L   H  S    
Sbjct: 80  LYIVMEYCEGGDLASVITKGTKERQ------YLDEEFVLRVMTQLTLALKECHRRSDGGH 133

Query: 461 PIVHGSLTPSSILLDRNLVAKISGLGLNI-------------------------CDQLNV 495
            ++H  L P+++ LD     K+   GL                               N 
Sbjct: 134 TVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNE 193

Query: 496 RSDIRAFGTLLLHLLTGRN-WAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIAL 554
           +SDI + G LL  L      +    +K +        ++ +G     P   ++EL  I  
Sbjct: 194 KSDIWSLGCLLYELCALMPPFTAFSQKEL------AGKIREGKFRRIPYRYSDELNEIIT 247

Query: 555 KCLSAD 560
           + L+  
Sbjct: 248 RMLNLK 253

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.7 bits (240), Expect = 8e-23
 Identities = 46/245 (18%), Positives = 86/245 (35%), Gaps = 54/245 (22%)

Query: 353 VYRGRLNHAS----VAIKTLNNGLSE----EDFQAKVSFLTAVRHPHLVAVMGCCS-ELK 403
           V +G          VA+K L N  ++    ++  A+ + +  + +P++V ++G C  E  
Sbjct: 23  VKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESW 82

Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
            +V E    G L   L           + R ++  + I + H+V +G+ +L        V
Sbjct: 83  MLVMEMAELGPLNKYLQ----------QNRHVKDKNIIELVHQVSMGMKYLE---ESNFV 129

Query: 464 HGSLTPSSILLDRNLVAKISGLGLNICD----------------------------QLNV 495
           H  L   ++LL     AKIS  GL+                               + + 
Sbjct: 130 HRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSS 189

Query: 496 RSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALK 555
           +SD+ +FG L+    +         K   +       +  G     P     E+  +   
Sbjct: 190 KSDVWSFGVLMWEAFSYGQKPYRGMKGSEV----TAMLEKGERMGCPAGCPREMYDLMNL 245

Query: 556 CLSAD 560
           C + D
Sbjct: 246 CWTYD 250

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.4 bits (242), Expect = 1e-22
 Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 43/213 (20%)

Query: 331 IRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSE---EDFQAKVSFLT 385
           + L  +DF E+     AG+   V++     +   +A K ++  +          ++  L 
Sbjct: 1   MELKDDDF-EKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLH 59

Query: 386 AVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHI 443
               P++V   G         I  E+M  G+L   L  + R          +       +
Sbjct: 60  ECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR----------IPEQILGKV 109

Query: 444 AHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC------------- 490
           +  V  GL++L       I+H  + PS+IL++     K+   G++               
Sbjct: 110 SIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTR 167

Query: 491 ----------DQLNVRSDIRAFGTLLLHLLTGR 513
                        +V+SDI + G  L+ +  GR
Sbjct: 168 SYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 200

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.1 bits (238), Expect = 1e-22
 Identities = 58/273 (21%), Positives = 103/273 (37%), Gaps = 57/273 (20%)

Query: 353 VYRGRLNHAS------VAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCSELK 403
           VY+G L  +S      VAIKTL  G +E    DF  +   +    H +++ + G  S+ K
Sbjct: 23  VYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYK 82

Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              I+ EYM NG L               +      L  + +   +  G+ +L +     
Sbjct: 83  PMMIITEYMENGALDKF---------LREKDGEFSVLQLVGMLRGIAAGMKYLAN---MN 130

Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLNIC----------------------------DQL 493
            VH  L   +IL++ NLV K+S  GL+                               + 
Sbjct: 131 YVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKF 190

Query: 494 NVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIA 553
              SD+ +FG ++  ++T             +    +  + DG     P+D    +  + 
Sbjct: 191 TSASDVWSFGIVMWEVMTYGERPYWELSNHEV----MKAINDGFRLPTPMDCPSAIYQLM 246

Query: 554 LKCLSADQDANRDLRIAGVMKELDEVRKKADGL 586
           ++C    Q+  R  + A ++  LD++ +  D L
Sbjct: 247 MQCWQ--QERARRPKFADIVSILDKLIRAPDSL 277

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.6 bits (237), Expect = 4e-22
 Identities = 48/261 (18%), Positives = 89/261 (34%), Gaps = 59/261 (22%)

Query: 353 VYRGRLNHAS-------VAIKTLNNGLSE---EDFQAKVSFLTAV-RHPHLVAVMGCCSE 401
           V        S       VA+K L         E   +++  +T +  H ++V ++G C+ 
Sbjct: 53  VMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTL 112

Query: 402 LK--CIVFEYMPNGNLRDKL-------------FTSQRNYKNCSRARALRWLDRIHIAHE 446
                ++FEY   G+L + L             + +Q+  +       L + D +  A++
Sbjct: 113 SGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQ 172

Query: 447 VCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---------------- 490
           V  G+ FL     +  VH  L   ++L+    V KI   GL                   
Sbjct: 173 VAKGMEFLEF---KSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLP 229

Query: 491 -----------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG 539
                          ++SD+ ++G LL  + +           + +D      + +G   
Sbjct: 230 VKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGV---NPYPGIPVDANFYKLIQNGFKM 286

Query: 540 IWPLDLAEELAGIALKCLSAD 560
             P    EE+  I   C + D
Sbjct: 287 DQPFYATEEIYIIMQSCWAFD 307

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.7 bits (235), Expect = 4e-22
 Identities = 39/263 (14%), Positives = 80/263 (30%), Gaps = 55/263 (20%)

Query: 336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSE--EDFQAKVSFLTAVRHPH 391
           EDF E       G +  VY+ +        A K ++    E  ED+  ++  L +  HP+
Sbjct: 11  EDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPN 70

Query: 392 LVAVMGCC--SELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCL 449
           +V ++          I+ E+   G +   +             R L       +  +   
Sbjct: 71  IVKLLDAFYYENNLWILIEFCAGGAVDAVM---------LELERPLTESQIQVVCKQTLD 121

Query: 450 GLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL---------------------- 487
            L++LH      I+H  L   +IL   +   K++  G+                      
Sbjct: 122 ALNYLHD---NKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMA 178

Query: 488 --------NICDQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG 539
                   +     + ++D+ + G  L+ +         +          L+++      
Sbjct: 179 PEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELN-----PMRVLLKIAKSEPP 233

Query: 540 I--WPLDLAEELAGIALKCLSAD 560
               P   +        KCL  +
Sbjct: 234 TLAQPSRWSSNFKDFLKKCLEKN 256

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.1 bits (233), Expect = 5e-22
 Identities = 46/267 (17%), Positives = 82/267 (30%), Gaps = 56/267 (20%)

Query: 353 VYRGRLNHAS-----VAIKTLNNGLSE-----EDFQAKVSFLTAVRHPHLVAVMGCCSEL 402
           V RG  +  S     VA+K L   +       +DF  +V+ + ++ H +L+ + G     
Sbjct: 24  VRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTP 83

Query: 403 K-CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              +V E  P G+L D         +                A +V  G+ +L S   + 
Sbjct: 84  PMKMVTELAPLGSLLD---------RLRKHQGHFLLGTLSRYAVQVAEGMGYLES---KR 131

Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLNIC----------------------------DQL 493
            +H  L   ++LL    + KI   GL                                  
Sbjct: 132 FIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTF 191

Query: 494 NVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIA 553
           +  SD   FG  L  + T           +   Q       +G     P D  +++  + 
Sbjct: 192 SHASDTWMFGVTLWEMFTYGQEP---WIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVM 248

Query: 554 LKCLSADQDANRDLRIAGVMKELDEVR 580
           ++C +             +   L E +
Sbjct: 249 VQCWA--HKPEDRPTFVALRDFLLEAQ 273

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.1 bits (233), Expect = 1e-21
 Identities = 50/273 (18%), Positives = 89/273 (32%), Gaps = 58/273 (21%)

Query: 353 VYRGRLNHAS-----VAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCSELK- 403
           VY G L          A+K+LN          F  +   +    HP++++++G C   + 
Sbjct: 43  VYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEG 102

Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              +V  YM +G+LR+            +        D I    +V  G+ FL     + 
Sbjct: 103 SPLVVLPYMKHGDLRN---------FIRNETHNPTVKDLIGFGLQVAKGMKFLA---SKK 150

Query: 462 IVHGSLTPSSILLDRNLVAKISGLGLN-----------------------------ICDQ 492
            VH  L   + +LD     K++  GL                                 +
Sbjct: 151 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQK 210

Query: 493 LNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGI 552
              +SD+ +FG LL  L+T             +     + +L G   + P    + L  +
Sbjct: 211 FTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDI----TVYLLQGRRLLQPEYCPDPLYEV 266

Query: 553 ALKCLSADQDANRDLRIAGVMKELDEVRKKADG 585
            LKC      A      + ++  +  +     G
Sbjct: 267 MLKCWH--PKAEMRPSFSELVSRISAIFSTFIG 297

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.7 bits (230), Expect = 2e-21
 Identities = 45/245 (18%), Positives = 79/245 (32%), Gaps = 49/245 (20%)

Query: 353 VYRGRLNHAS--VAIKTLN----NGLSEEDFQAKVSFLTAVRHPHLVAVMGCC------S 400
           VY+G     +  VA   L          + F+ +   L  ++HP++V             
Sbjct: 25  VYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGK 84

Query: 401 ELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPR 460
           +   +V E M +G L+  L           R + ++         ++  GL FLH+  P 
Sbjct: 85  KCIVLVTELMTSGTLKTYLK----------RFKVMKIKVLRSWCRQILKGLQFLHTRTP- 133

Query: 461 PIVHGSLTPSSILL-DRNLVAKISGLGLN----------------------ICDQLNVRS 497
           PI+H  L   +I +       KI  LGL                         ++ +   
Sbjct: 134 PIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEEKYDESV 193

Query: 498 DIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCL 557
           D+ AFG  +L + T         +     Q             +      E+  I   C+
Sbjct: 194 DVYAFGMCMLEMATSEY---PYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCI 250

Query: 558 SADQD 562
             ++D
Sbjct: 251 RQNKD 255

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.3 bits (231), Expect = 2e-21
 Identities = 47/274 (17%), Positives = 93/274 (33%), Gaps = 56/274 (20%)

Query: 353 VYRGRLNHAS-------VAIKTLNNGLSE---EDFQAKVSFLTAV-RHPHLVAVMGCCSE 401
           V                VA+K L         E   +++  L+ +  H ++V ++G C+ 
Sbjct: 39  VVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTI 98

Query: 402 --LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRAR--------ALRWLDRIHIAHEVCLGL 451
                ++ EY   G+L + L   + ++     +         AL   D +  +++V  G+
Sbjct: 99  GGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGM 158

Query: 452 SFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--------------------- 490
           +FL S   +  +H  L   +ILL    + KI   GL                        
Sbjct: 159 AFLAS---KNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMA 215

Query: 491 ------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLD 544
                       SD+ ++G  L  L +  +        M +D      + +G   + P  
Sbjct: 216 PESIFNCVYTFESDVWSYGIFLWELFSLGS---SPYPGMPVDSKFYKMIKEGFRMLSPEH 272

Query: 545 LAEELAGIALKCLSADQDANRDLRIAGVMKELDE 578
              E+  I   C   D D  +      +++ +++
Sbjct: 273 APAEMYDIMKTCW--DADPLKRPTFKQIVQLIEK 304

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (221), Expect = 2e-20
 Identities = 37/241 (15%), Positives = 79/241 (32%), Gaps = 53/241 (21%)

Query: 353 VYRGRL--NHASVAIKTLNNGLS-----EEDFQAKVSFLTAVRHPHLVAVMGCCSELK-- 403
           VY  R   +   +A+K L          E   + +V   + +RHP+++ + G   +    
Sbjct: 22  VYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRV 81

Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
            ++ EY P G +  +L           +              E+   LS+ HS   + ++
Sbjct: 82  YLILEYAPLGTVYRELQ----------KLSKFDEQRTATYITELANALSYCHS---KRVI 128

Query: 464 HGSLTPSSILLDRNLVAKISGLGLNI-----------------------CDQLNVRSDIR 500
           H  + P ++LL      KI+  G ++                           + + D+ 
Sbjct: 129 HRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLW 188

Query: 501 AFGTLLLHLLTGRN-WAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSA 559
           + G L    L G+  +     +          ++       +P  + E    +  + L  
Sbjct: 189 SLGVLCYEFLVGKPPFEANTYQET------YKRISRVE-FTFPDFVTEGARDLISRLLKH 241

Query: 560 D 560
           +
Sbjct: 242 N 242

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.7 bits (222), Expect = 4e-20
 Identities = 42/260 (16%), Positives = 99/260 (38%), Gaps = 50/260 (19%)

Query: 336 EDFSERFRLKC---AGDWTNVYRGRL--NHASVAIKTLN-NGLSEEDFQAKVSFLTAVRH 389
           ++  E++ +      G++  V+R     +  +   K +   G  +   + ++S L   RH
Sbjct: 1   KELYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARH 60

Query: 390 PHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEV 447
            +++ +      ++   ++FE++   ++ +++          + A  L   + +   H+V
Sbjct: 61  RNILHLHESFESMEELVMIFEFISGLDIFERI---------NTSAFELNEREIVSYVHQV 111

Query: 448 CLGLSFLHSTEPRPIVHGSLTPSSILLD--RNLVAKISGLGL------------------ 487
           C  L FLHS     I H  + P +I+    R+   KI   G                   
Sbjct: 112 CEALQFLHS---HNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPE 168

Query: 488 ------NICDQLNVRSDIRAFGTLLLHLLTGRN-WAGLVEKAMALDQTTLMQVLDGNAGI 540
                 +  D ++  +D+ + GTL+  LL+G N +    E    + +  +      +   
Sbjct: 169 YYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLA--ETNQQIIENIMNAEYTFDEEA 226

Query: 541 WPLDLAEELAGIALKCLSAD 560
           +  +++ E      + L  +
Sbjct: 227 FK-EISIEAMDFVDRLLVKE 245

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 89.7 bits (222), Expect = 6e-20
 Identities = 47/277 (16%), Positives = 97/277 (35%), Gaps = 57/277 (20%)

Query: 323 FREYAAEDIRLATEDFSERFRLKC---AGDWTNVYRGR--LNHASVAIKTLNNGL--SEE 375
           +++Y  + + +  +   + + +      G +  V+R        + A K +       +E
Sbjct: 9   WKQYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKE 68

Query: 376 DFQAKVSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRAR 433
             + ++  ++ +RHP LV +     +     +++E+M  G L +K+              
Sbjct: 69  TVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKV---------ADEHN 119

Query: 434 ALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILL--DRNLVAKISGLGLNI-- 489
            +   + +    +VC GL  +H       VH  L P +I+    R+   K+   GL    
Sbjct: 120 KMSEDEAVEYMRQVCKGLCHMHE---NNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHL 176

Query: 490 ----------------------CDQLNVRSDIRAFGTLLLHLLTGRN-WAGLVEKAMALD 526
                                    +   +D+ + G L   LL+G + + G        D
Sbjct: 177 DPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGG------END 230

Query: 527 QTTLMQVLDGNAGI---WPLDLAEELAGIALKCLSAD 560
             TL  V   +  +       ++E+      K L AD
Sbjct: 231 DETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLAD 267

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.0 bits (215), Expect = 2e-19
 Identities = 43/261 (16%), Positives = 80/261 (30%), Gaps = 54/261 (20%)

Query: 338 FSERFRLKC---AGDWTNVYRGRL--NHASVAIKTLNNGLS---EEDFQAKVSFLTAVRH 389
           F E + L      G +  V          +VA+K ++   +    E+ + ++     + H
Sbjct: 3   FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNH 62

Query: 390 PHLVAVMGCC--SELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEV 447
            ++V   G      ++ +  EY   G L D++               +   D     H++
Sbjct: 63  ENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIG----------MPEPDAQRFFHQL 112

Query: 448 CLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVR----------- 496
             G+ +LH      I H  + P ++LLD     KIS  GL    + N R           
Sbjct: 113 MAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTL 169

Query: 497 -----------------SDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG 539
                             D+ + G +L  +L G       ++     Q            
Sbjct: 170 PYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELP---WDQPSDSCQEYSDWKEKKTYL 226

Query: 540 IWPLDLAEELAGIALKCLSAD 560
                +      +  K L  +
Sbjct: 227 NPWKKIDSAPLALLHKILVEN 247

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 88.2 bits (218), Expect = 2e-19
 Identities = 44/277 (15%), Positives = 93/277 (33%), Gaps = 57/277 (20%)

Query: 323 FREYAAEDIRLATEDFSERFRLKC---AGDWTNVYRGRLNHAS--VAIKTLNNGLSEEDF 377
           +++Y  + + +      + + +     +G +  V+R            K +N     + +
Sbjct: 12  WKKYVPQPVEVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKY 71

Query: 378 QAK--VSFLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRAR 433
             K  +S +  + HP L+ +     +     ++ E++  G L D++          +   
Sbjct: 72  TVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRI---------AAEDY 122

Query: 434 ALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD--RNLVAKISGLGLNIC- 490
            +   + I+   + C GL  +H      IVH  + P +I+ +  +    KI   GL    
Sbjct: 123 KMSEAEVINYMRQACEGLKHMHE---HSIVHLDIKPENIMCETKKASSVKIIDFGLATKL 179

Query: 491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRN-WAGLVEKAMALD 526
                                  + +   +D+ A G L   LL+G + +AG        D
Sbjct: 180 NPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGED------D 233

Query: 527 QTTLMQVLDGNAGI---WPLDLAEELAGIALKCLSAD 560
             TL  V   +          ++ E        L  +
Sbjct: 234 LETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKE 270

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.8 bits (214), Expect = 2e-19
 Identities = 47/277 (16%), Positives = 102/277 (36%), Gaps = 61/277 (22%)

Query: 353 VYRGRLNHAS---------VAIKTLNNGLSEED---FQAKVSFLTAV-RHPHLVAVMGCC 399
           V                  VA+K L +  +E+D     +++  +  + +H +++ ++G C
Sbjct: 29  VVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGAC 88

Query: 400 SE--LKCIVFEYMPNGNLRDKLFTSQRN------YKNCSRARALRWLDRIHIAHEVCLGL 451
           ++     ++ EY   GNLR+ L   +          + +    L   D +  A++V  G+
Sbjct: 89  TQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGM 148

Query: 452 SFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--------------------- 490
            +L S   +  +H  L   ++L+  + V KI+  GL                        
Sbjct: 149 EYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMA 205

Query: 491 ------DQLNVRSDIRAFGTLLLHLLTGRN--WAGLVEKAMALDQTTLMQVLDGNAGIWP 542
                      +SD+ +FG LL  + T     + G+  + +         + +G+    P
Sbjct: 206 PEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEEL------FKLLKEGHRMDKP 259

Query: 543 LDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEV 579
            +   EL  +   C       ++      ++++LD +
Sbjct: 260 SNCTNELYMMMRDCW--HAVPSQRPTFKQLVEDLDRI 294

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.9 bits (214), Expect = 3e-19
 Identities = 49/276 (17%), Positives = 94/276 (34%), Gaps = 55/276 (19%)

Query: 353 VYRGRLNHAS-------VAIKTLNNGLSEEDFQAKVS----FLTAVRHPHLVAVMGCCSE 401
           V                VA+K L  G +  + +A +S     +    H ++V ++G C++
Sbjct: 29  VIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTK 88

Query: 402 LK---CIVFEYMPNGNLRDKLFTSQRNYKNCSRA------RALRWLDRIHIAHEVCLGLS 452
                 ++ E+   GNL   L + +  +     A        L     I  + +V  G+ 
Sbjct: 89  PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGME 148

Query: 453 FLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---------------------- 490
           FL S   R  +H  L   +ILL    V KI   GL                         
Sbjct: 149 FLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAP 205

Query: 491 -----DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDL 545
                    ++SD+ +FG LL  + +           + +D+    ++ +G     P   
Sbjct: 206 ETIFDRVYTIQSDVWSFGVLLWEIFSLGASP---YPGVKIDEEFCRRLKEGTRMRAPDYT 262

Query: 546 AEELAGIALKCLSADQDANRDLRIAGVMKELDEVRK 581
             E+    L C     + ++    + +++ L  + +
Sbjct: 263 TPEMYQTMLDCW--HGEPSQRPTFSELVEHLGNLLQ 296

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (213), Expect = 4e-19
 Identities = 39/260 (15%), Positives = 79/260 (30%), Gaps = 53/260 (20%)

Query: 336 EDFSERFRLKC---AGDWTNVYRGR--LNHASVAIKTLN--NGLSEEDFQAKVSFLTAVR 388
            D  +++        G    VY          VAI+ +N      +E    ++  +   +
Sbjct: 16  GDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENK 75

Query: 389 HPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHE 446
           +P++V  +          +V EY+  G+L D +  +  +                 +  E
Sbjct: 76  NPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMD-----------EGQIAAVCRE 124

Query: 447 VCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNI----------------- 489
               L FLHS     ++H  +   +ILL  +   K++  G                    
Sbjct: 125 CLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPY 181

Query: 490 --------CDQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGI- 540
                         + DI + G + + ++ G              +   +   +G   + 
Sbjct: 182 WMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGE----PPYLNENPLRALYLIATNGTPELQ 237

Query: 541 WPLDLAEELAGIALKCLSAD 560
            P  L+        +CL  D
Sbjct: 238 NPEKLSAIFRDFLNRCLDMD 257

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 83.5 bits (206), Expect = 4e-18
 Identities = 38/261 (14%), Positives = 77/261 (29%), Gaps = 48/261 (18%)

Query: 335 TEDFSERFRLKC---AGDWTNVYRGR--LNHASVAIKTLNNGLS---EEDFQAKVSFLTA 386
            ED  + +  +     G ++ V           VAIK +        E   + +++ L  
Sbjct: 4   AEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHK 63

Query: 387 VRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIA 444
           ++HP++VA+           ++ + +  G L D++                   D   + 
Sbjct: 64  IKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGF----------YTERDASRLI 113

Query: 445 HEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNI--------------- 489
            +V   + +LH                  LD +    IS  GL+                
Sbjct: 114 FQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTP 173

Query: 490 ---------CDQLNVRSDIRAFGTLLLHLLTGRN-WAGLVEKAMALDQTTLMQVLDGNAG 539
                        +   D  + G +   LL G   +    E    L +  L    + ++ 
Sbjct: 174 GYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYD--ENDAKLFEQILKAEYEFDSP 231

Query: 540 IWPLDLAEELAGIALKCLSAD 560
            W  D+++         +  D
Sbjct: 232 YWD-DISDSAKDFIRHLMEKD 251

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (201), Expect = 1e-17
 Identities = 45/266 (16%), Positives = 92/266 (34%), Gaps = 55/266 (20%)

Query: 353 VYRGRLNHAS------VAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE-L 402
           VY+G            VAIK L    S    ++   +   + +V +PH+  ++G C    
Sbjct: 25  VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 84

Query: 403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             ++ + MP G L D +   + N               ++   ++  G+++L     R +
Sbjct: 85  VQLITQLMPFGCLLDYVREHKDNIG---------SQYLLNWCVQIAKGMNYLE---DRRL 132

Query: 463 VHGSLTPSSILLDRNLVAKISGLGLN---------------------------ICDQLNV 495
           VH  L   ++L+      KI+  GL                            +      
Sbjct: 133 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 192

Query: 496 RSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALK 555
           +SD+ ++G  +  L+T  +       A  +       +  G     P     ++  I +K
Sbjct: 193 QSDVWSYGVTVWELMTFGSKPYDGIPASEI----SSILEKGERLPQPPICTIDVYMIMVK 248

Query: 556 CLSADQDANRDLRIAGVMKELDEVRK 581
           C     DA+   +   ++ E  ++ +
Sbjct: 249 CWM--IDADSRPKFRELIIEFSKMAR 272

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.1 bits (202), Expect = 2e-17
 Identities = 49/265 (18%), Positives = 88/265 (33%), Gaps = 56/265 (21%)

Query: 353 VYRGRL--NHASVAIKTLNNGLSEED--------FQAKVSFLTAVRHPHLVAVMGCCSEL 402
           VY  R        A+K L+    +           +  +S ++    P +V +       
Sbjct: 20  VYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTP 79

Query: 403 K--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPR 460
                + + M  G+L   L                   D    A E+ LGL  +H+   R
Sbjct: 80  DKLSFILDLMNGGDLHYHLSQHGVFS----------EADMRFYAAEIILGLEHMHN---R 126

Query: 461 PIVHGSLTPSSILLDRNLVAKISGLGLNI------------------------CDQLNVR 496
            +V+  L P++ILLD +   +IS LGL                              +  
Sbjct: 127 FVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSS 186

Query: 497 SDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKC 556
           +D  + G +L  LL G +      +    D+  + ++    A   P   + EL  +    
Sbjct: 187 ADWFSLGCMLFKLLRGHSP---FRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGL 243

Query: 557 LSADQDANRDLRIAGVMKELDEVRK 581
           L  D     + R+  + +   EV++
Sbjct: 244 LQRD----VNRRLGCLGRGAQEVKE 264

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 80.6 bits (198), Expect = 3e-17
 Identities = 60/288 (20%), Positives = 102/288 (35%), Gaps = 62/288 (21%)

Query: 338 FSERFRLKC---AGDWTNVYRGR--LNHASVAIKTLNNGLSE-----EDFQAKVSFLTAV 387
            S+R+ L      G  + V+  R    H  VA+K L   L+        F+ +     A+
Sbjct: 5   LSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAAL 64

Query: 388 RHPHLVAVMGCCSE------LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRI 441
            HP +VAV            L  IV EY+    LRD + T             +     I
Sbjct: 65  NHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGP----------MTPKRAI 114

Query: 442 HIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----------- 490
            +  + C  L+F H      I+H  + P++I++      K+   G+              
Sbjct: 115 EVIADACQALNFSHQ---NGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQT 171

Query: 491 -----------------DQLNVRSDIRAFGTLLLHLLTGRN-WAGLVEKAMALDQTTLMQ 532
                            D ++ RSD+ + G +L  +LTG   + G    ++A        
Sbjct: 172 AAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDP 231

Query: 533 VLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVR 580
           +           L+ +L  + LK L+ + + NR    A +  +L  V 
Sbjct: 232 IPP---SARHEGLSADLDAVVLKALAKNPE-NRYQTAAEMRADLVRVH 275

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 80.5 bits (198), Expect = 3e-17
 Identities = 46/273 (16%), Positives = 82/273 (30%), Gaps = 66/273 (24%)

Query: 338 FSERFRLKC---AGDWTNVYRGR--LNHASVAIKTLNNGLS-----------EEDFQAKV 381
           F E +  K     G  + V R          A+K ++                E    +V
Sbjct: 1   FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEV 60

Query: 382 SFLTAVR-HPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWL 438
             L  V  HP+++ +           +VF+ M  G L D L          +    L   
Sbjct: 61  DILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYL----------TEKVTLSEK 110

Query: 439 DRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-------- 490
           +   I   +   +  LH      IVH  L P +ILLD ++  K++  G +          
Sbjct: 111 ETRKIMRALLEVICALHK---LNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLR 167

Query: 491 ----------------------DQLNVRSDIRAFGTLLLHLLTGRN-WAGLVEKAMALDQ 527
                                        D+ + G ++  LL G   +     K M + +
Sbjct: 168 EVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWH--RKQMLMLR 225

Query: 528 TTLMQVLDGNAGIWPLDLAEELAGIALKCLSAD 560
             +       +  W  D ++ +  +  + L   
Sbjct: 226 MIMSGNYQFGSPEWD-DYSDTVKDLVSRFLVVQ 257

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 74.0 bits (181), Expect = 5e-17
 Identities = 30/70 (42%), Positives = 42/70 (60%)

Query: 605 SNDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPN 664
           S + P  F CPI  E+MK P + + G +YE  ++++WL  GH T P +   L H  LTPN
Sbjct: 2   SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPN 61

Query: 665 HTLRSLIQEW 674
           + L+SLI  W
Sbjct: 62  YVLKSLIALW 71

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.5 bits (193), Expect = 1e-16
 Identities = 37/245 (15%), Positives = 69/245 (28%), Gaps = 57/245 (23%)

Query: 353 VYRGR--LNHASVAIKTLNNGLSEED-----FQAKVSFLTAVRHPHLVAVMGCCSELK-- 403
           V   R        AIK L      ++        +   ++ + HP  V +     + +  
Sbjct: 24  VVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKL 83

Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
                Y  NG L   +                          E+   L +LH    + I+
Sbjct: 84  YFGLSYAKNGELLKYIRKIGS----------FDETCTRFYTAEIVSALEYLHG---KGII 130

Query: 464 HGSLTPSSILLDRNLVAKISGLGLNICD---------------------------QLNVR 496
           H  L P +ILL+ ++  +I+  G                                     
Sbjct: 131 HRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKS 190

Query: 497 SDIRAFGTLLLHLLTGRN-WAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALK 555
           SD+ A G ++  L+ G   +    E  +        +++      +P     +   +  K
Sbjct: 191 SDLWALGCIIYQLVAGLPPFRAGNEYLI------FQKIIKLE-YDFPEKFFPKARDLVEK 243

Query: 556 CLSAD 560
            L  D
Sbjct: 244 LLVLD 248

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.6 bits (193), Expect = 2e-16
 Identities = 53/261 (20%), Positives = 94/261 (36%), Gaps = 56/261 (21%)

Query: 353 VYRGRL--NHASVAIKTLNNGLSE-----EDFQAKVSFLTAVRHPHLVAVMGCCSELKCI 405
           V+  R   N    A+K L   +       E    +   L+ V HP ++ + G   + + I
Sbjct: 20  VHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQI 79

Query: 406 --VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
             + +Y+  G L   L  SQR     ++            A EVCL L +LHS   + I+
Sbjct: 80  FMIMDYIEGGELFSLLRKSQRFPNPVAK----------FYAAEVCLALEYLHS---KDII 126

Query: 464 HGSLTPSSILLDRNLVAKISGLG----------------------LNICDQLNVRSDIRA 501
           +  L P +ILLD+N   KI+  G                      +      N   D  +
Sbjct: 127 YRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWS 186

Query: 502 FGTLLLHLLTGRN-WAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSAD 560
           FG L+  +L G   +                ++L+      P    E++  +  + ++ D
Sbjct: 187 FGILIYEMLAGYTPFYDSNTMKT------YEKILNAELRFPP-FFNEDVKDLLSRLITRD 239

Query: 561 QDANRDLRIAGVMKELDEVRK 581
                  R+  +    ++V+ 
Sbjct: 240 LSQ----RLGNLQNGTEDVKN 256

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (190), Expect = 6e-16
 Identities = 33/197 (16%), Positives = 66/197 (33%), Gaps = 48/197 (24%)

Query: 353 VYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK------- 403
           VY+ +L  +   VAIK +     +     ++  +  + H ++V +               
Sbjct: 36  VYQAKLCDSGELVAIKKVLQ--DKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVY 93

Query: 404 -CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
             +V +Y+P    R     S+         + L  +      +++   L+++HS     I
Sbjct: 94  LNLVLDYVPETVYRVARHYSRAK-------QTLPVIYVKLYMYQLFRSLAYIHS---FGI 143

Query: 463 VHGSLTPSSILLDRN-LVAKISGLGL-------------------------NICDQLNVR 496
            H  + P ++LLD +  V K+   G                                   
Sbjct: 144 CHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSS 203

Query: 497 SDIRAFGTLLLHLLTGR 513
            D+ + G +L  LL G+
Sbjct: 204 IDVWSAGCVLAELLLGQ 220

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.5 bits (185), Expect = 2e-15
 Identities = 51/244 (20%), Positives = 85/244 (34%), Gaps = 56/244 (22%)

Query: 353 VYRGRLNHAS--VAIKTLNNGLSEEDFQAKVSFL------TAVRHPHLVAVMGCC--SEL 402
           V+       +   AIK L   +   D   + + +       A  HP L  +       E 
Sbjct: 18  VFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKEN 77

Query: 403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPI 462
              V EY+  G+L   + +  +                   A E+ LGL FLHS   + I
Sbjct: 78  LFFVMEYLNGGDLMYHIQSCHK----------FDLSRATFYAAEIILGLQFLHS---KGI 124

Query: 463 VHGSLTPSSILLDRNLVAKISGLGLNICDQL-------------------------NVRS 497
           V+  L   +ILLD++   KI+  G+   + L                         N   
Sbjct: 125 VYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSV 184

Query: 498 DIRAFGTLLLHLLTGRN-WAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKC 556
           D  +FG LL  +L G++ + G        D+  L   +  +   +P  L +E   + +K 
Sbjct: 185 DWWSFGVLLYEMLIGQSPFHG-------QDEEELFHSIRMDNPFYPRWLEKEAKDLLVKL 237

Query: 557 LSAD 560
              +
Sbjct: 238 FVRE 241

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.7 bits (172), Expect = 6e-14
 Identities = 39/198 (19%), Positives = 63/198 (31%), Gaps = 50/198 (25%)

Query: 353 VYRGRL--NHASVAIKTLNNGLSEED-------FQAKVSFLTAVRHPHLVAVMGCCSELK 403
           VY+ R    +  VAIK +  G   E           ++  L  + HP+++ ++       
Sbjct: 14  VYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKS 73

Query: 404 --CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
              +VF++M                     +  L              GL +LH      
Sbjct: 74  NISLVFDFMETDLEVII----------KDNSLVLTPSHIKAYMLMTLQGLEYLHQ---HW 120

Query: 462 IVHGSLTPSSILLDRNLVAKISGLG--------------------------LNICDQLNV 495
           I+H  L P+++LLD N V K++  G                          L       V
Sbjct: 121 ILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGV 180

Query: 496 RSDIRAFGTLLLHLLTGR 513
             D+ A G +L  LL   
Sbjct: 181 GVDMWAVGCILAELLLRV 198

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.4 bits (169), Expect = 2e-13
 Identities = 47/271 (17%), Positives = 87/271 (32%), Gaps = 64/271 (23%)

Query: 336 EDFSERFRLKC---AGDWTNVYRGRL--NHASVAIKTLN--------NGLSEEDFQAKVS 382
           E+  + +       +G +  V + R        A K +          G+S ED + +VS
Sbjct: 6   ENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVS 65

Query: 383 FLTAVRHPHLVAVMGCCSELK--CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDR 440
            L  ++HP+++ +           ++ E +  G L D            +   +L   + 
Sbjct: 66  ILKEIQHPNVITLHEVYENKTDVILILELVAGGELFD----------FLAEKESLTEEEA 115

Query: 441 IHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN----LVAKISGLGLNIC------ 490
                ++  G+ +LHS     I H  L P +I+L          KI   GL         
Sbjct: 116 TEFLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNE 172

Query: 491 ------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQ 532
                             + L + +D+ + G +   LL+G +            Q TL  
Sbjct: 173 FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP-----FLGDTKQETLAN 227

Query: 533 VLDGNAGI---WPLDLAEELAGIALKCLSAD 560
           V   N      +  + +        + L  D
Sbjct: 228 VSAVNYEFEDEYFSNTSALAKDFIRRLLVKD 258

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.0 bits (168), Expect = 3e-13
 Identities = 36/246 (14%), Positives = 76/246 (30%), Gaps = 52/246 (21%)

Query: 353 VYRGR--LNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSELK------C 404
           V +          A+K L +    +  +       A + PH+V ++     L        
Sbjct: 28  VLQIFNKRTQEKFALKMLQD--CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL 85

Query: 405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVH 464
           IV E +  G L  ++             +A    +   I   +   + +LHS     I H
Sbjct: 86  IVMECLDGGELFSRIQD--------RGDQAFTEREASEIMKSIGEAIQYLHS---INIAH 134

Query: 465 GSLTPSSILLDR---NLVAKISGLGLNIC------------------------DQLNVRS 497
             + P ++L      N + K++  G                            ++ +   
Sbjct: 135 RDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSC 194

Query: 498 DIRAFGTLLLHLLTGR---NWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIAL 554
           D+ + G ++  LL G         +  +  +     M   +     W  +++EE+  +  
Sbjct: 195 DMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWS-EVSEEVKMLIR 253

Query: 555 KCLSAD 560
             L  +
Sbjct: 254 NLLKTE 259

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (166), Expect = 7e-13
 Identities = 26/146 (17%), Positives = 54/146 (36%), Gaps = 25/146 (17%)

Query: 353 VYRGR--LNHASVAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCSEL----- 402
           V      +N   VAIK ++    +   +    ++  L   RH +++ +            
Sbjct: 24  VCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQM 83

Query: 403 -KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
               +  ++   +L   L           + + L      +  +++  GL ++HS     
Sbjct: 84  KDVYLVTHLMGADLYKLL-----------KTQHLSNDHICYFLYQILRGLKYIHS---AN 129

Query: 462 IVHGSLTPSSILLDRNLVAKISGLGL 487
           ++H  L PS++LL+     KI   GL
Sbjct: 130 VLHRDLKPSNLLLNTTCDLKICDFGL 155

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (165), Expect = 8e-13
 Identities = 36/225 (16%), Positives = 77/225 (34%), Gaps = 55/225 (24%)

Query: 329 EDIRLATEDFSERFRLKC---AGDWTNVYRGR--LNHASVAIKTLNNGLSEEDFQAK--- 380
           +++     +    +R      +G +  V         A VAIK L      E F  +   
Sbjct: 7   QEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYR 66

Query: 381 -VSFLTAVRHPHLVAVMGCCSELK--------CIVFEYMPNGNLRDKLFTSQRNYKNCSR 431
            +  L  +RH +++ ++   +  +         +V  +M  G    KL   ++       
Sbjct: 67  ELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM--GTDLGKLMKHEK------- 117

Query: 432 ARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC- 490
              L       + +++  GL ++H+     I+H  L P ++ ++ +   KI   GL    
Sbjct: 118 ---LGEDRIQFLVYQMLKGLRYIHA---AGIIHRDLKPGNLAVNEDCELKILDFGLARQA 171

Query: 491 ----------------------DQLNVRSDIRAFGTLLLHLLTGR 513
                                  +     DI + G ++  ++TG+
Sbjct: 172 DSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGK 216

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.3 bits (145), Expect = 3e-12
 Identities = 18/71 (25%), Positives = 35/71 (49%)

Query: 607 DVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHT 666
           D+P      I  E+M+ P +   G +Y+ + +EE L      +P+T   L  + L PN  
Sbjct: 3   DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLA 62

Query: 667 LRSLIQEWHNK 677
           ++ +I  + ++
Sbjct: 63  MKEVIDAFISE 73

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (158), Expect = 4e-12
 Identities = 33/202 (16%), Positives = 62/202 (30%), Gaps = 53/202 (26%)

Query: 353 VYRGRLNHAS---VAIKTLNNGLSEEDFQAKV-------SFLTAVRHPHLVAVMGCCSEL 402
           V++ R        VA+K +     EE               L    HP++V +   C+  
Sbjct: 23  VFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVS 82

Query: 403 K-------CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLH 455
           +        +VFE++               Y +      +       +  ++  GL FLH
Sbjct: 83  RTDRETKLTLVFEHVDQDLTT---------YLDKVPEPGVPTETIKDMMFQLLRGLDFLH 133

Query: 456 STEPRPIVHGSLTPSSILLDRNLVAKISGLGLN------------------------ICD 491
           S     +VH  L P +IL+  +   K++  GL                         +  
Sbjct: 134 S---HRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQS 190

Query: 492 QLNVRSDIRAFGTLLLHLLTGR 513
                 D+ + G +   +   +
Sbjct: 191 SYATPVDLWSVGCIFAEMFRRK 212

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (158), Expect = 4e-12
 Identities = 36/195 (18%), Positives = 69/195 (35%), Gaps = 46/195 (23%)

Query: 353 VYRGR--LNHASVAIKTLNNGLSEED----FQAKVSFLTAVRHPHLVAVMGCCSELK--C 404
           VY+ R  L    VA+K +      E        ++S L  + HP++V ++          
Sbjct: 18  VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLY 77

Query: 405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVH 464
           +VFE++     +         + + S    +          ++  GL+F HS     ++H
Sbjct: 78  LVFEFLHQDLKK---------FMDASALTGIPLPLIKSYLFQLLQGLAFCHS---HRVLH 125

Query: 465 GSLTPSSILLDRNLVAKISGLGLNICDQLNVR--------------------------SD 498
             L P ++L++     K++  GL     + VR                           D
Sbjct: 126 RDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVD 185

Query: 499 IRAFGTLLLHLLTGR 513
           I + G +   ++T R
Sbjct: 186 IWSLGCIFAEMVTRR 200

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (157), Expect = 8e-12
 Identities = 49/263 (18%), Positives = 78/263 (29%), Gaps = 57/263 (21%)

Query: 353 VYRGR--LNHASVAIKTLNNGLSE-----EDFQAKVSFLTAVRHPHLVAVMGCCSELK-- 403
           V   R        A+K L   +            +   L   RHP L A+          
Sbjct: 21  VILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRL 80

Query: 404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
           C V EY   G L   L          SR R            E+   L +LHS   R +V
Sbjct: 81  CFVMEYANGGELFFHL----------SRERVFTEERARFYGAEIVSALEYLHS---RDVV 127

Query: 464 HGSLTPSSILLDRNLVAKISGLGLNI-------------------------CDQLNVRSD 498
           +  +   +++LD++   KI+  GL                            +      D
Sbjct: 128 YRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVD 187

Query: 499 IRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLS 558
               G ++  ++ GR            D   L +++      +P  L+ E   +    L 
Sbjct: 188 WWGLGVVMYEMMCGRLPFY------NQDHERLFELILMEEIRFPRTLSPEAKSLLAGLLK 241

Query: 559 ADQDANRDLRIAGVMKELDEVRK 581
            D       R+ G   +  EV +
Sbjct: 242 KDPKQ----RLGGGPSDAKEVME 260

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 2e-11
 Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 2/81 (2%)

Query: 601 NKEDSNDVPSVFICPIFQEVMKTPHVAADGF-SYELEAMEEWLGMGHDTSPMTNLRLKHK 659
            +E   D    F+ PI   +M  P V      + +   +     +   T P     L   
Sbjct: 12  EEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARH-LLSDQTDPFNRSPLTMD 70

Query: 660 YLTPNHTLRSLIQEWHNKQSS 680
            + PN  L+  IQ W  ++  
Sbjct: 71  QIRPNTELKEKIQRWLAERKQ 91

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.9 bits (152), Expect = 2e-11
 Identities = 29/251 (11%), Positives = 65/251 (25%), Gaps = 57/251 (22%)

Query: 353 VYRGR--LNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCC---SELKCIVF 407
           +Y G        VAIK             +      ++    +  +  C    +   +V 
Sbjct: 23  IYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM 82

Query: 408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSL 467
           E +                     +R       + +A ++   + ++HS   +  +H  +
Sbjct: 83  ELLGPSLEDL----------FNFCSRKFSLKTVLLLADQMISRIEYIHS---KNFIHRDV 129

Query: 468 TPSSIL---LDRNLVAKISGLGLNIC--------------------------------DQ 492
            P + L     +  +  I   GL                                    +
Sbjct: 130 KPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIE 189

Query: 493 LNVRSDIRAFGTLLLHLLTGR---NWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEEL 549
            + R D+ + G +L++   G           K    ++ +  ++      +       E 
Sbjct: 190 QSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCK-GYPSEF 248

Query: 550 AGIALKCLSAD 560
           A     C S  
Sbjct: 249 ATYLNFCRSLR 259

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (152), Expect = 3e-11
 Identities = 23/151 (15%), Positives = 55/151 (36%), Gaps = 29/151 (19%)

Query: 353 VYRGRL--NHASVAIKTLNNGLSEED----FQAKVSFLTAVRHPHLVAVMGCCSELK--- 403
           V++ R       VA+K +     +E        ++  L  ++H ++V ++  C       
Sbjct: 26  VFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPY 85

Query: 404 -------CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHS 456
                   +VF++  +           +              +   +   +  GL ++H 
Sbjct: 86  NRCKGSIYLVFDFCEHDLAGLLSNVLVK----------FTLSEIKRVMQMLLNGLYYIHR 135

Query: 457 TEPRPIVHGSLTPSSILLDRNLVAKISGLGL 487
                I+H  +  +++L+ R+ V K++  GL
Sbjct: 136 ---NKILHRDMKAANVLITRDGVLKLADFGL 163

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.3 bits (153), Expect = 3e-11
 Identities = 38/239 (15%), Positives = 71/239 (29%), Gaps = 50/239 (20%)

Query: 353 VYRGR--LNHASVAIKTLNNGLSE-----EDFQAKVSFLTAVRHPHLVAVMGCCSELKCI 405
           V   +   +    A+K L+          E    +   L AV  P LV +     +   +
Sbjct: 57  VMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNL 116

Query: 406 --VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIV 463
             V EY+  G +   L           R            A ++ L   +LHS     ++
Sbjct: 117 YMVMEYVAGGEMFSHLR----------RIGRFSEPHARFYAAQIVLTFEYLHS---LDLI 163

Query: 464 HGSLTPSSILLDRNLVAKISGLGLN----------------------ICDQLNVRSDIRA 501
           +  L P ++L+D+    +++  G                        +    N   D  A
Sbjct: 164 YRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWA 223

Query: 502 FGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSAD 560
            G L+  +  G           A     + + +      +P   + +L  +    L  D
Sbjct: 224 LGVLIYEMAAGYPP------FFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVD 276

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 62.2 bits (150), Expect = 4e-11
 Identities = 30/194 (15%), Positives = 66/194 (34%), Gaps = 46/194 (23%)

Query: 353 VYRGRLNHAS-VAIKTLNNGLSEED----FQAKVSFLTAVRHPHLVAVMGCCSE--LKCI 405
           VY+ + N+    A+K +     +E        ++S L  ++H ++V +           +
Sbjct: 18  VYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVL 77

Query: 406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHG 465
           VFE++     +                  L  +       ++  G+++ H    R ++H 
Sbjct: 78  VFEHLDQDLKKLLDVCEGG----------LESVTAKSFLLQLLNGIAYCHD---RRVLHR 124

Query: 466 SLTPSSILLDRNLVAKISGLGLNIC--------------------------DQLNVRSDI 499
            L P ++L++R    KI+  GL                              + +   DI
Sbjct: 125 DLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDI 184

Query: 500 RAFGTLLLHLLTGR 513
            + G +   ++ G 
Sbjct: 185 WSVGCIFAEMVNGT 198

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 61.0 bits (147), Expect = 1e-10
 Identities = 29/254 (11%), Positives = 67/254 (26%), Gaps = 57/254 (22%)

Query: 353 VYRGR--LNHASVAIKTLNNGLSEEDFQAKVSFLTAVRH-PHLVAVMGCCSELK--CIVF 407
           ++ G   LN+  VAIK           + +      +     +  V     E     +V 
Sbjct: 21  IFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVI 80

Query: 408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSL 467
           + +                      R          A ++   +  +H    + +V+  +
Sbjct: 81  DLLGPSLEDLLD----------LCGRKFSVKTVAMAAKQMLARVQSIHE---KSLVYRDI 127

Query: 468 TPSSILLDRNL-----VAKISGLGL--------------------------------NIC 490
            P + L+ R       +  +   G+                                ++ 
Sbjct: 128 KPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLG 187

Query: 491 DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPL--DLAEE 548
            + + R D+ A G + ++ L G      ++ A    +   +     +  +  L     EE
Sbjct: 188 REQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEE 247

Query: 549 LAGIALKCLSADQD 562
                    +   D
Sbjct: 248 FYKYMHYARNLAFD 261

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (140), Expect = 7e-10
 Identities = 32/247 (12%), Positives = 67/247 (27%), Gaps = 63/247 (25%)

Query: 353 VYRGR--LNHASVAIKTLNNGL--------SEEDFQAKVSFLTAVRHPH--LVAVMGCCS 400
           VY G    ++  VAIK +            +      +V  L  V      ++ ++    
Sbjct: 20  VYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFE 79

Query: 401 E--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTE 458
                 ++ E            T +          AL+         +V   +   H+  
Sbjct: 80  RPDSFVLILERPEPVQDLFDFITERG---------ALQEELARSFFWQVLEAVRHCHN-- 128

Query: 459 PRPIVHGSLTPSSILLDRN-LVAKISGLGLNICDQLNVRS-------------------- 497
              ++H  +   +IL+D N    K+   G     +  V +                    
Sbjct: 129 -CGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYH 187

Query: 498 ----DIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIA 553
                + + G LL  ++ G       E+ +                 +   ++ E   + 
Sbjct: 188 GRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQV------------FFRQRVSSECQHLI 235

Query: 554 LKCLSAD 560
             CL+  
Sbjct: 236 RWCLALR 242

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 58.3 bits (140), Expect = 8e-10
 Identities = 28/194 (14%), Positives = 67/194 (34%), Gaps = 50/194 (25%)

Query: 353 VYRGR--LNHASVAIKTLNNGLSEEDFQAKVSFLTAVR-HPHLVAVMGCC----SELKCI 405
           V+      N+  V +K L   + ++  + ++  L  +R  P+++ +        S    +
Sbjct: 51  VFEAINITNNEKVVVKILKP-VKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPAL 109

Query: 406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHG 465
           VFE++ N + +                + L   D     +E+   L + HS     I+H 
Sbjct: 110 VFEHVNNTDFKQLY-------------QTLTDYDIRFYMYEILKALDYCHS---MGIMHR 153

Query: 466 SLTPSSILLDR-NLVAKISGLGL-------------------------NICDQLNVRSDI 499
            + P ++++D  +   ++   GL                               +   D+
Sbjct: 154 DVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDM 213

Query: 500 RAFGTLLLHLLTGR 513
            + G +L  ++  +
Sbjct: 214 WSLGCMLASMIFRK 227

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (139), Expect = 1e-09
 Identities = 45/272 (16%), Positives = 87/272 (31%), Gaps = 63/272 (23%)

Query: 353 VYRGRLNHAS-----VAIKTLN------NGLSEEDFQAKVSFLTAVRH-PHLVAVMGCCS 400
           V+  R           A+K L          + E  + +   L  +R  P LV +     
Sbjct: 40  VFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQ 99

Query: 401 E--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTE 458
                 ++ +Y+  G L   L   +R              +      E+ L L  LH   
Sbjct: 100 TETKLHLILDYINGGELFTHLSQRER----------FTEHEVQIYVGEIVLALEHLHK-- 147

Query: 459 PRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQ-------------------------- 492
              I++  +   +ILLD N    ++  GL+                              
Sbjct: 148 -LGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGD 206

Query: 493 --LNVRSDIRAFGTLLLHLLTGRN-WAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEEL 549
              +   D  + G L+  LLTG + +    EK     Q  + + +  +   +P +++   
Sbjct: 207 SGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNS---QAEISRRILKSEPPYPQEMSALA 263

Query: 550 AGIALKCLSADQDANRDLRIAGVMKELDEVRK 581
             +  + L  D       R+    ++ DE+++
Sbjct: 264 KDLIQRLLMKDPKK----RLGCGPRDADEIKE 291

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 1e-09
 Identities = 29/195 (14%), Positives = 60/195 (30%), Gaps = 47/195 (24%)

Query: 353 VYRGRL--NHASVAIKTLNNGLSEED----FQAKVSFLTAVRHPHLVAVMGCCSE--LKC 404
           V++ +    H  VA+K +     +E        ++  L  ++H ++V +           
Sbjct: 18  VFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLT 77

Query: 405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVH 464
           +VFE+      +     +                       ++  GL F H    R ++H
Sbjct: 78  LVFEFCDQDLKKYFDSCNGDLD----------PEIVKSFLFQLLKGLGFCH---SRNVLH 124

Query: 465 GSLTPSSILLDRNLVAKISGLGL--------------------------NICDQLNVRSD 498
             L P ++L++RN   K++  GL                                +   D
Sbjct: 125 RDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSID 184

Query: 499 IRAFGTLLLHLLTGR 513
           + + G +   L    
Sbjct: 185 MWSAGCIFAELANAG 199

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 5e-09
 Identities = 34/216 (15%), Positives = 75/216 (34%), Gaps = 53/216 (24%)

Query: 337 DFSERFRLKC---AGDWTNVYRGR--LNHASVAIKTLNNGLSE----EDFQAKVSFLTAV 387
           +  ER++      +G + +V           VA+K L+         +    ++  L  +
Sbjct: 15  EVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHM 74

Query: 388 RHPHLVAVMGCCSELK-------CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDR 440
           +H +++ ++   +  +         +  ++              +  N  + + L     
Sbjct: 75  KHENVIGLLDVFTPARSLEEFNDVYLVTHLMGA-----------DLNNIVKCQKLTDDHV 123

Query: 441 IHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICD--------- 491
             + +++  GL ++HS     I+H  L PS++ ++ +   KI   GL             
Sbjct: 124 QFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVA 180

Query: 492 --------------QLNVRSDIRAFGTLLLHLLTGR 513
                           N   DI + G ++  LLTGR
Sbjct: 181 TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 216

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (107), Expect = 1e-06
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 2/79 (2%)

Query: 606 NDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGM--GHDTSPMTNLRLKHKYLTP 663
           N +  +  CPI  E++K P        +    M + L    G    P+    +  + L  
Sbjct: 16  NAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQE 75

Query: 664 NHTLRSLIQEWHNKQSSVH 682
           +     L++E      +  
Sbjct: 76  STRFSQLVEELLKIICAFQ 94

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.0 bits (110), Expect = 4e-06
 Identities = 33/200 (16%), Positives = 65/200 (32%), Gaps = 41/200 (20%)

Query: 353 VYRGR--LNHASVAIKTLN-NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE----LKCI 405
           V+  +  +N+  VA+K +  + +  E  + ++  L  V            +     L   
Sbjct: 29  VWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDH 88

Query: 406 VFEYMPNGNLRDKLFTSQRNYKNC----SRARALRWLDRIHIAHEVCLGLSFLHSTEPRP 461
                PNG     +F                R +  +    I+ ++ LGL ++H      
Sbjct: 89  FNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMH--RRCG 146

Query: 462 IVHGSLTPSSILLDRN------LVAKISGLGLNI----------------------CDQL 493
           I+H  + P ++L++        +  KI+ LG                             
Sbjct: 147 IIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPW 206

Query: 494 NVRSDIRAFGTLLLHLLTGR 513
              +DI +   L+  L+TG 
Sbjct: 207 GCGADIWSTACLIFELITGD 226

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 40.1 bits (93), Expect = 3e-04
 Identities = 18/144 (12%), Positives = 39/144 (27%), Gaps = 27/144 (18%)

Query: 352 NVYRGRL-NHASVAIKTLNNGLS------------EEDFQAKVSFLTAVRHPHLVAVMGC 398
            V+           +K    G +            +  F              L  + G 
Sbjct: 15  AVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGL 74

Query: 399 CSELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTE 458
                  V+ +  N  L +          +      +R  +   +   +   ++  +   
Sbjct: 75  AV---PKVYAWEGNAVLME--------LIDAKELYRVRVENPDEVLDMILEEVAKFYH-- 121

Query: 459 PRPIVHGSLTPSSILLDRNLVAKI 482
            R IVHG L+  ++L+    +  I
Sbjct: 122 -RGIVHGDLSQYNVLVSEEGIWII 144

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	683
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.97
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.87
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.5
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.49
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.48
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.3
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.16
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	98.02
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.88
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	97.17
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	97.12
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	96.97
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	96.94
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	96.83
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	96.8
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	95.5
d1x3ha2	32	Leupaxin {Human (Homo sapiens) [TaxId: 9606]}	89.8
d1cjaa_	342	Actin-fragmin kinase, catalytic domain {Physarum p	80.64

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.8e-47  Score=399.29  Aligned_cols=239  Identities=24%  Similarity=0.413  Sum_probs=197.3

Q ss_pred             ccCHHHHHHhhcCcccc--------ccccccCCceEEEEEEE--CC---eeEEEEEcCCCCC---HHHHHHHHHHHHhcC
Q 005680          325 EYAAEDIRLATEDFSER--------FRLKCAGDWTNVYRGRL--NH---ASVAIKTLNNGLS---EEDFQAKVSFLTAVR  388 (683)
Q Consensus       325 ~~s~~ei~~at~~F~~~--------~~liG~G~fG~Vykg~~--~g---~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~  388 (683)
                      .|+++++..++.+|...        .+++|+|+||.||+|.+  +|   ..||||.+.....   .+.|.+|+.+|++++
T Consensus         6 ~~t~~d~~~a~~~f~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~   85 (299)
T d1jpaa_           6 PFTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFD   85 (299)
T ss_dssp             GGGSSSHHHHHHHHSCBCCGGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHHhhhchhhChhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCC
Confidence            45677788888777543        25789999999999998  23   3699999874433   357999999999999


Q ss_pred             CCCccceeccccc--ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEecc
Q 005680          389 HPHLVAVMGCCSE--LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGS  466 (683)
Q Consensus       389 HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrD  466 (683)
                      |||||+++|+|.+  ..+||||||++|+|.+++.         .....++|..++.|+.||+.||.|||+   ++|+|||
T Consensus        86 HpnIv~l~g~~~~~~~~~iv~Ey~~~g~L~~~~~---------~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHrD  153 (299)
T d1jpaa_          86 HPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLR---------QNDGQFTVIQLVGMLRGIAAGMKYLAD---MNYVHRD  153 (299)
T ss_dssp             CTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHH---------TTTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSC
T ss_pred             CCCCccEEEEEeeCCEEEEEEEecCCCcceeeec---------cccCCCCHHHHHHHHHHHHHHHHHHhh---CCCccCc
Confidence            9999999999965  7899999999999999884         234579999999999999999999999   6799999


Q ss_pred             CCCCcccccCCCcEEEecCCCccc------------------------------cCCCcccccccHHHHHHHHhh-CCCC
Q 005680          467 LTPSSILLDRNLVAKISGLGLNIC------------------------------DQLNVRSDIRAFGTLLLHLLT-GRNW  515 (683)
Q Consensus       467 LKP~NILld~~~~~KL~DFGla~~------------------------------~~~t~ksDVwSlGviL~eLlt-G~~P  515 (683)
                      |||+||||+.++++||+|||+|+.                              ..++.++|||||||++|||+| |++|
T Consensus       154 lKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~P  233 (299)
T d1jpaa_         154 LAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERP  233 (299)
T ss_dssp             CCGGGEEECTTCCEEECCC-----------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCT
T ss_pred             cccceEEECCCCcEEECCcccceEccCCCCcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCC
Confidence            999999999999999999999853                              357889999999999999998 8999


Q ss_pred             chhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          516 AGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       516 f~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      |.....     ...+..+......+.|..++..+.+|+.+||+.|  |..|||+.+|++.|+.+.+.
T Consensus       234 f~~~~~-----~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~~--P~~RPs~~ei~~~L~~~l~~  293 (299)
T d1jpaa_         234 YWDMTN-----QDVINAIEQDYRLPPPMDCPSALHQLMLDCWQKD--RNHRPKFGQIVNTLDKMIRN  293 (299)
T ss_dssp             TTTCCH-----HHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSS--TTTSCCHHHHHHHHHHHHHS
T ss_pred             CCCCCH-----HHHHHHHHcCCCCCCCccchHHHHHHHHHHcCCC--HhHCcCHHHHHHHHHHHhcC
Confidence            965322     2233344455566677789999999999999999  88999999999999998754

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-47  Score=392.79  Aligned_cols=226  Identities=21%  Similarity=0.363  Sum_probs=185.8

Q ss_pred             ccccccCCceEEEEEEECCeeEEEEEcCC----CCCHHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecCCCCch
Q 005680          342 FRLKCAGDWTNVYRGRLNHASVAIKTLNN----GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMPNGNLR  416 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~g~~VAvK~l~~----~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~ggsL~  416 (683)
                      .+.+|+|+||.||+|++.+ .||||+++.    ....+.|.+|+.+|++++|||||+++|++.+ ..+||||||+||+|.
T Consensus        13 ~~~lG~G~fg~Vy~~~~~~-~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~~~~~lv~Ey~~~g~L~   91 (276)
T d1uwha_          13 GQRIGSGSFGTVYKGKWHG-DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQWCEGSSLY   91 (276)
T ss_dssp             CSEEEECSSCEEEEEESSS-EEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECCCEEEHH
T ss_pred             EEEEeeCCCcEEEEEEECC-EEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEeccEEEEEEecCCCCCHH
Confidence            3567899999999998765 599999972    2234679999999999999999999999876 789999999999999


Q ss_pred             hhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc------
Q 005680          417 DKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC------  490 (683)
Q Consensus       417 ~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~------  490 (683)
                      ++|..         ....+++..++.|+.||+.||.|||+   ++||||||||+||||+.++.+||+|||+|+.      
T Consensus        92 ~~l~~---------~~~~~~~~~~~~i~~qi~~gl~yLH~---~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~  159 (276)
T d1uwha_          92 HHLHI---------IETKFEMIKLIDIARQTAQGMDYLHA---KSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSG  159 (276)
T ss_dssp             HHHHT---------SCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTSSEEECCCCCSCC------
T ss_pred             HHHhh---------ccCCCCHHHHHHHHHHHHHHHHHHhc---CCEeccccCHHHEEEcCCCCEEEccccceeeccccCC
Confidence            99952         33569999999999999999999999   7799999999999999999999999999843      


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhH
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLA  546 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~  546 (683)
                                              +.|+.++|||||||+||||+||+.||...................+.....+..++
T Consensus       160 ~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  239 (276)
T d1uwha_         160 SHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCP  239 (276)
T ss_dssp             ------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHHTSCCCCGGGSCTTCC
T ss_pred             cccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCcchhccccch
Confidence                                    23688999999999999999999999653221101111111111122233456788


Q ss_pred             HHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          547 EELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       547 ~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      +.+.+|+.+||+.|  |..|||+.+|++.|+.|.+.
T Consensus       240 ~~l~~li~~cl~~d--p~~RPt~~~il~~Le~l~~~  273 (276)
T d1uwha_         240 KAMKRLMAECLKKK--RDERPLFPQILASIELLARS  273 (276)
T ss_dssp             HHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCC--HhHCcCHHHHHHHHHHHHHc
Confidence            99999999999999  88999999999999999764

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-46  Score=382.27  Aligned_cols=221  Identities=24%  Similarity=0.419  Sum_probs=187.9

Q ss_pred             ccccccCCceEEEEEEE-CCeeEEEEEcC-CCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCchh
Q 005680          342 FRLKCAGDWTNVYRGRL-NHASVAIKTLN-NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNLRD  417 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~-~g~~VAvK~l~-~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL~~  417 (683)
                      .+.+|+|+||.||+|.+ ++..||||+++ .....+.|.+|+.++++++|||||+++|+|.+  ..+|||||+++|+|.+
T Consensus        10 ~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~~~g~L~~   89 (263)
T d1sm2a_          10 VQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSD   89 (263)
T ss_dssp             EEEEECCSSCCEEEEEETTTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHH
T ss_pred             EEEEeeCCCeEEEEEEECCCCEEEEEEECCCcCcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEecCCCcHHH
Confidence            35678999999999999 67889999998 34456889999999999999999999999965  7899999999999999


Q ss_pred             hhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-------
Q 005680          418 KLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-------  490 (683)
Q Consensus       418 ~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-------  490 (683)
                      ++.         .....+++..++.|+.|||.||.|||+   .+|+||||||+|||||.++.+||+|||+|+.       
T Consensus        90 ~l~---------~~~~~~~~~~~~~i~~qia~gl~~lH~---~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~  157 (263)
T d1sm2a_          90 YLR---------TQRGLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYT  157 (263)
T ss_dssp             HHH---------TTTTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCTTCSGGGEEECGGGCEEECSCC-----------
T ss_pred             Hhh---------ccccCCCHHHHHHHHHHHHHHHHhhhc---cceeecccchhheeecCCCCeEecccchheeccCCCce
Confidence            985         234678999999999999999999999   6799999999999999999999999999853       


Q ss_pred             -------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHH
Q 005680          491 -------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELA  550 (683)
Q Consensus       491 -------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~  550 (683)
                                         ..++.++|||||||++|||+| |.+||.....     ...+..+..+.....|..+++++.
T Consensus       158 ~~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~~-----~~~~~~i~~~~~~~~p~~~~~~l~  232 (263)
T d1sm2a_         158 SSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN-----SEVVEDISTGFRLYKPRLASTHVY  232 (263)
T ss_dssp             -------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCCH-----HHHHHHHHHTCCCCCCTTSCHHHH
T ss_pred             eecceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCCH-----HHHHHHHHhcCCCCCccccCHHHH
Confidence                               357889999999999999999 5666653211     223334445556667778899999


Q ss_pred             HHHHHhhhcCCCccccccHHHHHHHHHHHHH
Q 005680          551 GIALKCLSADQDANRDLRIAGVMKELDEVRK  581 (683)
Q Consensus       551 ~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~  581 (683)
                      +|+.+||+.|  |.+|||+.+|++.|+.|.+
T Consensus       233 ~li~~cl~~~--p~~Rps~~~il~~L~~i~e  261 (263)
T d1sm2a_         233 QIMNHCWKER--PEDRPAFSRLLRQLAEIAE  261 (263)
T ss_dssp             HHHHHHTCSS--GGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHccCC--HhHCcCHHHHHHHHHHHHh
Confidence            9999999999  8899999999999999865

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-45  Score=382.60  Aligned_cols=220  Identities=25%  Similarity=0.388  Sum_probs=188.8

Q ss_pred             cccccCCceEEEEEEE-CCeeEEEEEcC-CCCCHHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecCCCCchhhh
Q 005680          343 RLKCAGDWTNVYRGRL-NHASVAIKTLN-NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMPNGNLRDKL  419 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~-~g~~VAvK~l~-~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~ggsL~~~L  419 (683)
                      +.+|+|+||.||+|.+ ++..||||+++ .....+.|.+|+.+|++++|||||+++|+|.+ ..+|||||+++|+|.+++
T Consensus        19 ~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~iv~Ey~~~g~L~~~~   98 (272)
T d1qpca_          19 ERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFL   98 (272)
T ss_dssp             EEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTTCBHHHHT
T ss_pred             EEEecCCCcEEEEEEECCCCEEEEEEEccCcCCHHHHHHHHHHHHhCCCCCEeEEEeeeccCCeEEEEEeCCCCcHHHHH
Confidence            5578999999999999 56889999997 34456789999999999999999999999876 789999999999999988


Q ss_pred             hhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---------
Q 005680          420 FTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---------  490 (683)
Q Consensus       420 ~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---------  490 (683)
                      ...        ....+++..++.|+.||+.||.|||+   .+|+||||||+||||+.++.+||+|||+|+.         
T Consensus        99 ~~~--------~~~~l~~~~~~~i~~qi~~gl~~lH~---~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~~~~  167 (272)
T d1qpca_          99 KTP--------SGIKLTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAR  167 (272)
T ss_dssp             TSH--------HHHTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECC
T ss_pred             hhc--------CCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCccchhheeeecccceeeccccceEEccCCccccc
Confidence            433        33469999999999999999999999   6799999999999999999999999999853         


Q ss_pred             -----------------cCCCcccccccHHHHHHHHhhC-CCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHH
Q 005680          491 -----------------DQLNVRSDIRAFGTLLLHLLTG-RNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGI  552 (683)
Q Consensus       491 -----------------~~~t~ksDVwSlGviL~eLltG-~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~L  552 (683)
                                       ..++.++|||||||++|||+|| .+|+....     ....+..+..+.....|..+++++.+|
T Consensus       168 ~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~-----~~~~~~~i~~~~~~~~p~~~~~~l~~l  242 (272)
T d1qpca_         168 EGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMT-----NPEVIQNLERGYRMVRPDNCPEELYQL  242 (272)
T ss_dssp             TTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCC-----HHHHHHHHHTTCCCCCCTTCCHHHHHH
T ss_pred             cccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCC-----HHHHHHHHHhcCCCCCcccChHHHHHH
Confidence                             3478899999999999999995 55554321     123334455556667778899999999


Q ss_pred             HHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          553 ALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       553 i~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      +.+||+.|  |.+|||+.+|++.|+.+.
T Consensus       243 i~~cl~~~--P~~Rpt~~ei~~~L~~~f  268 (272)
T d1qpca_         243 MRLCWKER--PEDRPTFDYLRSVLEDFF  268 (272)
T ss_dssp             HHHHTCSS--GGGSCCHHHHHHHHHHHH
T ss_pred             HHHHcCCC--HhHCcCHHHHHHHhhhhh
Confidence            99999999  889999999999998875

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-45  Score=384.57  Aligned_cols=218  Identities=21%  Similarity=0.364  Sum_probs=188.5

Q ss_pred             cccCCceEEEEEEE----CCeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecCCCCch
Q 005680          345 KCAGDWTNVYRGRL----NHASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMPNGNLR  416 (683)
Q Consensus       345 iG~G~fG~Vykg~~----~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~ggsL~  416 (683)
                      +|+|+||.||+|.+    ++..||||+++....   .+.|.+|+.+|++++|||||+++|+|.+ ..|||||||+||+|.
T Consensus        17 iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~~~~lvmE~~~~g~L~   96 (285)
T d1u59a_          17 LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPLH   96 (285)
T ss_dssp             EECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTEEHH
T ss_pred             EecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeeccCeEEEEEEeCCCCcHH
Confidence            68999999999987    345799999974433   3579999999999999999999999965 889999999999999


Q ss_pred             hhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc------
Q 005680          417 DKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC------  490 (683)
Q Consensus       417 ~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~------  490 (683)
                      +++.         .....+++..+..|+.||+.||.|||+   ++|+||||||+||||+.++.+||+|||+|+.      
T Consensus        97 ~~l~---------~~~~~l~~~~~~~i~~qi~~gL~ylH~---~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~  164 (285)
T d1u59a_          97 KFLV---------GKREEIPVSNVAELLHQVSMGMKYLEE---KNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDS  164 (285)
T ss_dssp             HHHT---------TCTTTSCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSC
T ss_pred             HHhh---------ccccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCcCchhheeeccCCceeeccchhhhccccccc
Confidence            9984         234579999999999999999999999   7799999999999999999999999999853      


Q ss_pred             ----------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHH
Q 005680          491 ----------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAE  547 (683)
Q Consensus       491 ----------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~  547 (683)
                                            ..++.++|||||||++|||+| |++||.....     ......+..+.....|..+++
T Consensus       165 ~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~-----~~~~~~i~~~~~~~~p~~~~~  239 (285)
T d1u59a_         165 YYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG-----PEVMAFIEQGKRMECPPECPP  239 (285)
T ss_dssp             EECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCT-----HHHHHHHHTTCCCCCCTTCCH
T ss_pred             ccccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCH-----HHHHHHHHcCCCCCCCCcCCH
Confidence                                  346889999999999999998 9999975322     223344555666778889999


Q ss_pred             HHHHHHHHhhhcCCCccccccHHHHHHHHHHHHH
Q 005680          548 ELAGIALKCLSADQDANRDLRIAGVMKELDEVRK  581 (683)
Q Consensus       548 ~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~  581 (683)
                      ++.+|+.+||+.|  |.+|||+.+|++.|+.+..
T Consensus       240 ~l~~li~~cl~~~--p~~RPs~~~i~~~L~~~~~  271 (285)
T d1u59a_         240 ELYALMSDCWIYK--WEDRPDFLTVEQRMRACYY  271 (285)
T ss_dssp             HHHHHHHHTTCSS--GGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCC--HhHCcCHHHHHHHHHHHHH
Confidence            9999999999999  8899999999999987754

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-45  Score=384.43  Aligned_cols=225  Identities=21%  Similarity=0.380  Sum_probs=190.4

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcC-CCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeec
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN-NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYM  410 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~-~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~  410 (683)
                      ++|.. .+.+|+|+||.||+|.+  +|+.||||+++ .....+.|.+|+.+|++++|||||+++|+|.+  ..+||||||
T Consensus        17 ~~~~~-~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~   95 (287)
T d1opja_          17 TDITM-KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFM   95 (287)
T ss_dssp             GGEEE-EEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECC
T ss_pred             HHeEE-eeEEeeCCCeEEEEEEECCCCeEEEEEEECCccchHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEEeecc
Confidence            34433 35678999999999998  58999999997 34456789999999999999999999999976  789999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~  490 (683)
                      ++|+|.++|...        ....+++..++.|+.||+.||.|||+   ++|+||||||+||||+.++.+||+|||+|+.
T Consensus        96 ~~g~l~~~l~~~--------~~~~~~~~~~~~i~~qi~~gL~yLH~---~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~  164 (287)
T d1opja_          96 TYGNLLDYLREC--------NRQEVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRL  164 (287)
T ss_dssp             TTCBHHHHHHHS--------CTTTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCCCTTT
T ss_pred             cCcchHHHhhhc--------cccchHHHHHHHHHHHHHHHHHHHHH---CCcccCccccCeEEECCCCcEEEccccceee
Confidence            999999999543        34679999999999999999999999   6799999999999999999999999999864


Q ss_pred             --------------------------cCCCcccccccHHHHHHHHhhCCCCc-hhhHHHhhhhHHHHHH-HhcCCCCCCC
Q 005680          491 --------------------------DQLNVRSDIRAFGTLLLHLLTGRNWA-GLVEKAMALDQTTLMQ-VLDGNAGIWP  542 (683)
Q Consensus       491 --------------------------~~~t~ksDVwSlGviL~eLltG~~Pf-~~~~~~~~~~~~~~~~-ild~~~~~~p  542 (683)
                                                ..|+.++|||||||++|||+||..|| ...      ....+.. +........|
T Consensus       165 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~------~~~~~~~~i~~~~~~~~~  238 (287)
T d1opja_         165 MTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGI------DLSQVYELLEKDYRMERP  238 (287)
T ss_dssp             CCSSSSEEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTC------CHHHHHHHHHTTCCCCCC
T ss_pred             cCCCCceeeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcc------hHHHHHHHHhcCCCCCCC
Confidence                                      45889999999999999999966554 321      1222223 3334556777


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      ..+++.+.+|+.+||+.|  |.+|||+.+|++.|+.+.
T Consensus       239 ~~~~~~l~~li~~cl~~d--P~~Rps~~ei~~~L~~~~  274 (287)
T d1opja_         239 EGCPEKVYELMRACWQWN--PSDRPSFAEIHQAFETMF  274 (287)
T ss_dssp             TTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHTT
T ss_pred             ccchHHHHHHHHHHcCCC--HhHCcCHHHHHHHHHHHH
Confidence            789999999999999999  889999999999988764

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-45  Score=383.10  Aligned_cols=218  Identities=22%  Similarity=0.352  Sum_probs=186.5

Q ss_pred             cccccCCceEEEEEEE----CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecCCC
Q 005680          343 RLKCAGDWTNVYRGRL----NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMPNG  413 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~----~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~gg  413 (683)
                      +.+|+|+||.||+|.+    .++.||||+++...    ..+.|.+|+.+|++++|||||+++|+|.+ ..+||||||++|
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~~~~lvmE~~~~g   92 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELG   92 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESSSEEEEEECCTTE
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEeccCCEEEEEEcCCCC
Confidence            5678999999999987    24689999997322    23579999999999999999999999966 789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|.+++.          ....+++..++.|+.||+.||.|||+   .+||||||||+||||+.++.+||+|||+|+.   
T Consensus        93 ~L~~~l~----------~~~~l~~~~~~~i~~qi~~gl~ylH~---~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~  159 (277)
T d1xbba_          93 PLNKYLQ----------QNRHVKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRA  159 (277)
T ss_dssp             EHHHHHH----------HCTTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCCTTCEECCT
T ss_pred             cHHHHHh----------hccCCCHHHHHHHHHHHHHHHhhHHh---CCcccCCCcchhhcccccCcccccchhhhhhccc
Confidence            9999993          45679999999999999999999999   6799999999999999999999999999853   


Q ss_pred             -------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChh
Q 005680          491 -------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLD  544 (683)
Q Consensus       491 -------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~  544 (683)
                                               ..++.++|||||||++|||+| |++||.....     ......+..+.....|..
T Consensus       160 ~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~-----~~~~~~i~~~~~~~~p~~  234 (277)
T d1xbba_         160 DENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKG-----SEVTAMLEKGERMGCPAG  234 (277)
T ss_dssp             TCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCH-----HHHHHHHHTTCCCCCCTT
T ss_pred             cccccccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCCH-----HHHHHHHHcCCCCCCCcc
Confidence                                     346789999999999999998 8999975322     222334444566777888


Q ss_pred             hHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          545 LAEELAGIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      +++++.+|+.+||+.|  |..|||+.+|+..|+...
T Consensus       235 ~~~~~~~li~~cl~~d--p~~RPs~~~i~~~L~~~~  268 (277)
T d1xbba_         235 CPREMYDLMNLCWTYD--VENRPGFAAVELRLRNYY  268 (277)
T ss_dssp             CCHHHHHHHHHHTCSS--TTTSCCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCC--HhHCcCHHHHHHHhhCHH
Confidence            9999999999999999  889999999999888764

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-45  Score=377.94  Aligned_cols=216  Identities=21%  Similarity=0.316  Sum_probs=185.1

Q ss_pred             CccccccccccCCceEEEEEEE--CCeeEEEEEcC-----CCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEE
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN-----NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVF  407 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~-----~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~  407 (683)
                      +|.. .+.+|+|+||.||+|..  +|+.||||++.     .......+.+|+.++++++|||||++++++.+  ..||||
T Consensus         7 dy~i-~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivm   85 (263)
T d2j4za1           7 DFEI-GRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLIL   85 (263)
T ss_dssp             GEEE-EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HeEE-EEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEE
Confidence            4543 46788999999999998  58999999986     23446789999999999999999999999976  789999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCC
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL  487 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGl  487 (683)
                      |||+||+|.+++.          ....+++..+..|+.||+.||.|||+   ++||||||||+||||+.++.+||+|||+
T Consensus        86 Ey~~~g~L~~~l~----------~~~~l~e~~~~~i~~qi~~al~~lH~---~~ivHrDiKp~Nill~~~~~~kl~DFG~  152 (263)
T d2j4za1          86 EYAPLGTVYRELQ----------KLSKFDEQRTATYITELANALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGW  152 (263)
T ss_dssp             ECCTTCBHHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCCS
T ss_pred             eecCCCcHHHHHh----------hcCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeeeeccccceecCCCCEeecccce
Confidence            9999999999993          44679999999999999999999999   7799999999999999999999999999


Q ss_pred             ccc-----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChh
Q 005680          488 NIC-----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLD  544 (683)
Q Consensus       488 a~~-----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~  544 (683)
                      |+.                       ..++.++|||||||++|+|+||++||.....     ...+..+. .....+|..
T Consensus       153 a~~~~~~~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~-----~~~~~~i~-~~~~~~p~~  226 (263)
T d2j4za1         153 SVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTY-----QETYKRIS-RVEFTFPDF  226 (263)
T ss_dssp             CSCCCCCCCEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHHHH-TTCCCCCTT
T ss_pred             eeecCCCcccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCCH-----HHHHHHHH-cCCCCCCcc
Confidence            854                       3578999999999999999999999964221     12222232 334556778


Q ss_pred             hHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          545 LAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +++++.+|+.+||+.|  |.+|||+.++++
T Consensus       227 ~s~~~~~li~~~L~~d--p~~R~t~~eil~  254 (263)
T d2j4za1         227 VTEGARDLISRLLKHN--PSQRPMLREVLE  254 (263)
T ss_dssp             SCHHHHHHHHHHTCSS--GGGSCCHHHHHT
T ss_pred             CCHHHHHHHHHHccCC--HhHCcCHHHHHc
Confidence            8999999999999999  889999999875

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-45  Score=374.84  Aligned_cols=221  Identities=25%  Similarity=0.376  Sum_probs=191.4

Q ss_pred             cccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccccc---ceeEEEeecCCCCchhhh
Q 005680          343 RLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE---LKCIVFEYMPNGNLRDKL  419 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~---~~~LV~Ey~~ggsL~~~L  419 (683)
                      +.+|+|+||.||+|.++|..||||+++.....+.|.+|+.++++++|||||+++|+|.+   ..||||||+++|+|.++|
T Consensus        13 ~~lG~G~fg~Vy~~~~~~~~vAvK~i~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ey~~~g~L~~~l   92 (262)
T d1byga_          13 QTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYL   92 (262)
T ss_dssp             EEEEECSSCEEEEEEETTEEEEEEECCCCC--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTTEEHHHHH
T ss_pred             EEEecCCCeEEEEEEECCeEEEEEEECcHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEeccCCCCHHHHH
Confidence            56789999999999999999999999877777889999999999999999999999853   579999999999999999


Q ss_pred             hhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---------
Q 005680          420 FTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---------  490 (683)
Q Consensus       420 ~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---------  490 (683)
                      ...        ....++|..++.|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++.         
T Consensus        93 ~~~--------~~~~l~~~~~~~i~~~i~~al~ylH~---~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~~~~~~  161 (262)
T d1byga_          93 RSR--------GRSVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGK  161 (262)
T ss_dssp             HHH--------HHHHCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTSCEEECCCCC------------
T ss_pred             Hhc--------CCCCCCHHHHHHHHHHHHhhcccccc---CceeccccchHhheecCCCCEeecccccceecCCCCcccc
Confidence            533        33468999999999999999999999   7799999999999999999999999999864         


Q ss_pred             -------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHh
Q 005680          491 -------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKC  556 (683)
Q Consensus       491 -------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~C  556 (683)
                                   ..+++++|||||||++|||+| |++||.....     ......+..+..++.|..+++.+.+|+.+|
T Consensus       162 ~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~li~~c  236 (262)
T d1byga_         162 LPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL-----KDVVPRVEKGYKMDAPDGCPPAVYEVMKNC  236 (262)
T ss_dssp             CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCG-----GGHHHHHTTTCCCCCCTTCCHHHHHHHHHH
T ss_pred             ccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCH-----HHHHHHHHcCCCCCCCccCCHHHHHHHHHH
Confidence                         468899999999999999998 7888764321     233444555667778888999999999999


Q ss_pred             hhcCCCccccccHHHHHHHHHHHHH
Q 005680          557 LSADQDANRDLRIAGVMKELDEVRK  581 (683)
Q Consensus       557 L~~dP~p~~RPs~~eVl~~L~~l~~  581 (683)
                      |+.|  |.+|||+.+|++.|+.++.
T Consensus       237 l~~d--P~~Rps~~~l~~~L~~i~~  259 (262)
T d1byga_         237 WHLD--AAMRPSFLQLREQLEHIKT  259 (262)
T ss_dssp             TCSS--GGGSCCHHHHHHHHHHHHH
T ss_pred             cccC--HhHCcCHHHHHHHHHHHHh
Confidence            9999  8899999999999999864

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-44  Score=370.10  Aligned_cols=223  Identities=23%  Similarity=0.393  Sum_probs=192.4

Q ss_pred             cCccccccccccCCceEEEEEEE-CCeeEEEEEcC-CCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecC
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL-NHASVAIKTLN-NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~-~g~~VAvK~l~-~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      ++|.- .+.+|+|+||+||+|++ ++..||||+++ .....+.|.+|+.++++++|||||+++|+|.+  ..++||||++
T Consensus         4 ~~~~~-~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~~   82 (258)
T d1k2pa_           4 KDLTF-LKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMA   82 (258)
T ss_dssp             CCCCC-CCCCCEETTEEEEEEEETTTEEEEEEEEESSSSCHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECCT
T ss_pred             HHCEE-eEEEecCCCeEEEEEEECCCCEEEEEEECcCcCCHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEccC
Confidence            45543 35678999999999999 57799999998 44567889999999999999999999999975  7899999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      +|+|.+++.         .....+++..+.+|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+++. 
T Consensus        83 ~g~l~~~~~---------~~~~~~~~~~~~~i~~qi~~gl~~LH~---~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~  150 (258)
T d1k2pa_          83 NGCLLNYLR---------EMRHRFQTQQLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYV  150 (258)
T ss_dssp             TEEHHHHHH---------SGGGCCCHHHHHHHHHHHHHHHHHHHH---TTBCCSCCSGGGEEECTTCCEEECCCSSCCBC
T ss_pred             CCcHHHhhh---------ccccCCcHHHHHHHHHHHHHHHHHHhh---cCcccccccceeEEEcCCCcEEECcchhheec
Confidence            999999974         345678999999999999999999999   7799999999999999999999999999853 


Q ss_pred             -------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChh
Q 005680          491 -------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLD  544 (683)
Q Consensus       491 -------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~  544 (683)
                                               ..++.++|||||||++|||+| |+.||.....     ......+..+.....|..
T Consensus       151 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~-----~~~~~~i~~~~~~~~p~~  225 (258)
T d1k2pa_         151 LDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTN-----SETAEHIAQGLRLYRPHL  225 (258)
T ss_dssp             SSSSCCCCCCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCH-----HHHHHHHHTTCCCCCCTT
T ss_pred             cCCCceeecccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCH-----HHHHHHHHhCCCCCCccc
Confidence                                     357899999999999999998 8999975322     233344555666677788


Q ss_pred             hHHHHHHHHHHhhhcCCCccccccHHHHHHHHHH
Q 005680          545 LAEELAGIALKCLSADQDANRDLRIAGVMKELDE  578 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~  578 (683)
                      +++.+.+|+.+||+.|  |.+|||+.+++..|..
T Consensus       226 ~~~~l~~li~~cl~~d--P~~RPt~~eil~~L~d  257 (258)
T d1k2pa_         226 ASEKVYTIMYSCWHEK--ADERPTFKILLSNILD  257 (258)
T ss_dssp             CCHHHHHHHHHTTCSS--GGGSCCHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHccCC--HhHCcCHHHHHHHhhC
Confidence            8999999999999999  8899999999998853

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-44  Score=378.49  Aligned_cols=219  Identities=17%  Similarity=0.295  Sum_probs=183.9

Q ss_pred             CccccccccccCCceEEEEEEE--CCeeEEEEEcCC--CCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeec
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN--GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYM  410 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~--~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~  410 (683)
                      ++++..+.+|+|+||.||+|.+  +|..||||++..  ....+.+.+|+.+|++++|||||++++++.+  ..|||||||
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy~   91 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFC   91 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEecC
Confidence            3445567789999999999998  688999999873  2334679999999999999999999999965  789999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~  490 (683)
                      +||+|.+++..         ...++++..+..|+.||+.||.|||+   ++|+||||||+||||+.++.+||+|||+|+.
T Consensus        92 ~~g~L~~~~~~---------~~~~l~e~~~~~i~~qi~~gL~ylH~---~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~  159 (288)
T d2jfla1          92 AGGAVDAVMLE---------LERPLTESQIQVVCKQTLDALNYLHD---NKIIHRDLKAGNILFTLDGDIKLADFGVSAK  159 (288)
T ss_dssp             TTEEHHHHHHH---------HTSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             CCCcHHHHHHh---------cCCCCCHHHHHHHHHHHHHHHHHHHH---CCEEEeecChhheeECCCCCEEEEechhhhc
Confidence            99999999842         34569999999999999999999999   7799999999999999999999999999843


Q ss_pred             ------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCC--C
Q 005680          491 ------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGN--A  538 (683)
Q Consensus       491 ------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~--~  538 (683)
                                                    ..|+.++|||||||++|+|+||++||.....     ...+..+....  .
T Consensus       160 ~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~-----~~~~~~i~~~~~~~  234 (288)
T d2jfla1         160 NTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNP-----MRVLLKIAKSEPPT  234 (288)
T ss_dssp             CHHHHHHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCG-----GGHHHHHHHSCCCC
T ss_pred             cCCCcccccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCH-----HHHHHHHHcCCCCC
Confidence                                          2367899999999999999999999965322     22233344332  3


Q ss_pred             CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          539 GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       539 ~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ...|..+++++.+|+.+||+.|  |..|||+.++++
T Consensus       235 ~~~~~~~s~~~~~li~~~L~~d--p~~R~t~~ell~  268 (288)
T d2jfla1         235 LAQPSRWSSNFKDFLKKCLEKN--VDARWTTSQLLQ  268 (288)
T ss_dssp             CSSGGGSCHHHHHHHHHHSCSS--TTTSCCHHHHTT
T ss_pred             CCccccCCHHHHHHHHHHccCC--hhHCcCHHHHhc
Confidence            3445678899999999999999  889999998864

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-45  Score=377.14  Aligned_cols=225  Identities=20%  Similarity=0.291  Sum_probs=181.4

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC-C---HHHHHHHHHHHHhcCCCCccceeccccc----ceeE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-S---EEDFQAKVSFLTAVRHPHLVAVMGCCSE----LKCI  405 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~----~~~L  405 (683)
                      ++|.. .+.+|+|+||.||+|..  +|+.||||++.... .   .+.+.+|+.+|++++|||||++++++.+    ..||
T Consensus         4 edy~~-~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~i   82 (269)
T d2java1           4 EDYEV-LYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI   82 (269)
T ss_dssp             GGEEE-EEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEE
T ss_pred             hhCEE-eEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEE
Confidence            34543 46778999999999998  68999999987322 2   3568899999999999999999998843    5799


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCC--CcEEeccCCCCcccccCCCcEEEe
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEP--RPIVHGSLTPSSILLDRNLVAKIS  483 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~--~~IiHrDLKP~NILld~~~~~KL~  483 (683)
                      |||||+||+|.+++....      .....+++..++.|+.||+.||.|||+.++  .+||||||||+||||+.++.+||+
T Consensus        83 vmEy~~~g~L~~~i~~~~------~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~  156 (269)
T d2java1          83 VMEYCEGGDLASVITKGT------KERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLG  156 (269)
T ss_dssp             EEECCTTEEHHHHHHHHH------HHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEEC
T ss_pred             EEecCCCCcHHHHHHhcc------ccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEe
Confidence            999999999999996432      245679999999999999999999998431  249999999999999999999999


Q ss_pred             cCCCccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCC
Q 005680          484 GLGLNIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNA  538 (683)
Q Consensus       484 DFGla~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~  538 (683)
                      |||+|+.                         ..|+.++|||||||++|||+||++||.....     ......+.....
T Consensus       157 DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~-----~~~~~~i~~~~~  231 (269)
T d2java1         157 DFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQ-----KELAGKIREGKF  231 (269)
T ss_dssp             CHHHHHHC-----------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH-----HHHHHHHHHTCC
T ss_pred             eccceeecccCCCccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCH-----HHHHHHHHcCCC
Confidence            9999853                         3578999999999999999999999965322     223344555555


Q ss_pred             CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          539 GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       539 ~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ...|..+++++.+|+.+||+.|  |..|||+.++++
T Consensus       232 ~~~~~~~s~~l~~li~~~L~~d--p~~Rps~~ell~  265 (269)
T d2java1         232 RRIPYRYSDELNEIITRMLNLK--DYHRPSVEEILE  265 (269)
T ss_dssp             CCCCTTSCHHHHHHHHHHTCSS--GGGSCCHHHHHT
T ss_pred             CCCCcccCHHHHHHHHHHcCCC--hhHCcCHHHHHh
Confidence            5677788999999999999999  889999999874

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-44  Score=373.20  Aligned_cols=227  Identities=24%  Similarity=0.415  Sum_probs=188.7

Q ss_pred             CccccccccccCCceEEEEEEEC--C----eeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--ceeE
Q 005680          337 DFSERFRLKCAGDWTNVYRGRLN--H----ASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCI  405 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~~--g----~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~L  405 (683)
                      .|.. .+++|+|+||.||+|.+.  +    ..||||+++....   ...|.+|+.+|++++|||||+++|+|.+  ..++
T Consensus         8 ~~~~-~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~~   86 (283)
T d1mqba_           8 CVTR-QKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI   86 (283)
T ss_dssp             TEEE-EEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HeEe-eeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceEE
Confidence            3443 468899999999999973  2    4799999974433   3468999999999999999999999966  7899


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecC
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGL  485 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DF  485 (683)
                      |||||.+|+|.+++.         .....+++..++.|+.||+.||.|||+   .+|+||||||+||||+.++.+||+||
T Consensus        87 v~e~~~~~~l~~~~~---------~~~~~~~~~~~~~i~~~i~~gl~~lH~---~~iiHrDlKp~NILl~~~~~~Kl~DF  154 (283)
T d1mqba_          87 ITEYMENGALDKFLR---------EKDGEFSVLQLVGMLRGIAAGMKYLAN---MNYVHRDLAARNILVNSNLVCKVSDF  154 (283)
T ss_dssp             EEECCTTEEHHHHHH---------HTTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC
T ss_pred             EEEecccCcchhhhh---------cccccccHHHHHHHHHHHHHhhhhccc---cccccCccccceEEECCCCeEEEccc
Confidence            999999999999884         234679999999999999999999999   67999999999999999999999999


Q ss_pred             CCccc----------------------------cCCCcccccccHHHHHHHHhhCC-CCchhhHHHhhhhHHHHHHHhcC
Q 005680          486 GLNIC----------------------------DQLNVRSDIRAFGTLLLHLLTGR-NWAGLVEKAMALDQTTLMQVLDG  536 (683)
Q Consensus       486 Gla~~----------------------------~~~t~ksDVwSlGviL~eLltG~-~Pf~~~~~~~~~~~~~~~~ild~  536 (683)
                      |+|+.                            ..++.++|||||||++|||+||. +|+....     ....+..+.++
T Consensus       155 Gla~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~-----~~~~~~~i~~~  229 (283)
T d1mqba_         155 GLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELS-----NHEVMKAINDG  229 (283)
T ss_dssp             CC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC-----HHHHHHHHHTT
T ss_pred             chhhcccCCCccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccCC-----HHHHHHHHhcc
Confidence            99853                            35788999999999999999965 4444321     12334455566


Q ss_pred             CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          537 NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       537 ~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      ...+.|..++..+.+|+.+||+.|  |..|||+.+|++.|+.+.+..
T Consensus       230 ~~~~~~~~~~~~l~~li~~cl~~~--p~~RPt~~eil~~L~~l~~~p  274 (283)
T d1mqba_         230 FRLPTPMDCPSAIYQLMMQCWQQE--RARRPKFADIVSILDKLIRAP  274 (283)
T ss_dssp             CCCCCCTTCBHHHHHHHHHHTCSS--TTTSCCHHHHHHHHHHHHHSG
T ss_pred             CCCCCchhhHHHHHHHHHHHCcCC--HhHCcCHHHHHHHHHHHhhCc
Confidence            667778889999999999999999  889999999999999987643

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-44  Score=374.40  Aligned_cols=219  Identities=19%  Similarity=0.254  Sum_probs=178.2

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC---CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEe
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG---LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFE  408 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~---~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~E  408 (683)
                      ++|.. .+.+|+|+||.||+|.+  +|+.||||+++..   ...+.+.+|+.+|++++|||||++++++.+  ..|||||
T Consensus         5 ~dy~~-~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmE   83 (271)
T d1nvra_           5 EDWDL-VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   83 (271)
T ss_dssp             TEEEE-EEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cceEE-EEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEe
Confidence            34543 46778999999999998  6899999998632   223568999999999999999999999966  7899999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCc
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN  488 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla  488 (683)
                      ||+||+|.++|          .....+++..+..|+.||+.||.|||+   ++|+||||||+|||++.++.+||+|||+|
T Consensus        84 y~~gg~L~~~l----------~~~~~l~e~~~~~i~~qi~~al~ylH~---~~IiHrDiKp~NILl~~~~~~KL~DFG~a  150 (271)
T d1nvra_          84 YCSGGELFDRI----------EPDIGMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLA  150 (271)
T ss_dssp             CCTTEEGGGGS----------BTTTBCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCCTTC
T ss_pred             ccCCCcHHHHH----------hcCCCCCHHHHHHHHHHHHHHHHHHHH---cCCccCcccHHHEEECCCCCEEEccchhh
Confidence            99999999999          455679999999999999999999999   77999999999999999999999999998


Q ss_pred             cc---------------------------cC-CCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC-CCC
Q 005680          489 IC---------------------------DQ-LNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG-NAG  539 (683)
Q Consensus       489 ~~---------------------------~~-~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~-~~~  539 (683)
                      +.                           .. ++.++|||||||++|+|+||++||......    .......... ...
T Consensus       151 ~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~----~~~~~~~~~~~~~~  226 (271)
T d1nvra_         151 TVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDS----CQEYSDWKEKKTYL  226 (271)
T ss_dssp             EECEETTEECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTT----SHHHHHHHTTCTTS
T ss_pred             eeeccCCccccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChH----HHHHHHHhcCCCCC
Confidence            53                           12 357899999999999999999999643221    1111122222 222


Q ss_pred             CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          540 IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       540 ~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ..+..+++++.+|+.+||+.|  |..|||+.++++
T Consensus       227 ~~~~~~s~~~~~li~~~L~~d--P~~R~t~~eil~  259 (271)
T d1nvra_         227 NPWKKIDSAPLALLHKILVEN--PSARITIPDIKK  259 (271)
T ss_dssp             TTGGGSCHHHHHHHHHHSCSS--TTTSCCHHHHTT
T ss_pred             CccccCCHHHHHHHHHHcCCC--hhHCcCHHHHhc
Confidence            223467899999999999999  889999998854

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-44  Score=375.15  Aligned_cols=213  Identities=19%  Similarity=0.278  Sum_probs=180.3

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcC--CCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCC
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLN--NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGN  414 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~--~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggs  414 (683)
                      ..+.+|+|+||.||+|..  +|+.||||++.  .....+.+.+|+.+|++++|||||++++++.+  ..|||||||+||+
T Consensus        24 ~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg~  103 (293)
T d1yhwa1          24 RFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGS  103 (293)
T ss_dssp             SCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCB
T ss_pred             EEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEecCCCc
Confidence            345678999999999997  68999999987  33456789999999999999999999999965  7899999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc----
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC----  490 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~----  490 (683)
                      |.+++.           ...+++..+..|+.||+.||.|||+   ++||||||||+||||+.+|.+||+|||+|+.    
T Consensus       104 L~~~~~-----------~~~l~~~~~~~i~~qi~~aL~yLH~---~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~  169 (293)
T d1yhwa1         104 LTDVVT-----------ETCMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE  169 (293)
T ss_dssp             HHHHHH-----------HSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECCST
T ss_pred             HHHHhh-----------ccCCCHHHHHHHHHHHHHHHHHHHH---CCCcccCCcHHHeEECCCCcEeeccchhheeeccc
Confidence            999873           2469999999999999999999999   7799999999999999999999999999853    


Q ss_pred             ---------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC--CCCCCChhhHH
Q 005680          491 ---------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG--NAGIWPLDLAE  547 (683)
Q Consensus       491 ---------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~--~~~~~p~~~~~  547 (683)
                                           ..|+.++|||||||++|+|+||++||.....     ...+..+...  .....|..+++
T Consensus       170 ~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~  244 (293)
T d1yhwa1         170 QSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENP-----LRALYLIATNGTPELQNPEKLSA  244 (293)
T ss_dssp             TCCBCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH-----HHHHHHHHHHCSCCCSSGGGSCH
T ss_pred             cccccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCH-----HHHHHHHHhCCCCCCCCcccCCH
Confidence                                 3578999999999999999999999964322     1122222222  23345667899


Q ss_pred             HHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          548 ELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       548 ~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .+.+||.+||+.|  |..|||+.++++
T Consensus       245 ~~~~li~~~L~~d--P~~R~s~~eil~  269 (293)
T d1yhwa1         245 IFRDFLNRCLDMD--VEKRGSAKELLQ  269 (293)
T ss_dssp             HHHHHHHHHTCSS--TTTSCCHHHHTT
T ss_pred             HHHHHHHHHccCC--hhHCcCHHHHhc
Confidence            9999999999999  889999999864

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-44  Score=369.48  Aligned_cols=222  Identities=25%  Similarity=0.357  Sum_probs=186.4

Q ss_pred             ccccccCCceEEEEEEEC-----CeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecCC
Q 005680          342 FRLKCAGDWTNVYRGRLN-----HASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMPN  412 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~-----g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~g  412 (683)
                      .+.+|+|+||.||+|.+.     +..||||.++....   ...|.+|+.+|++++|||||+++|+|.+ ..||||||+++
T Consensus        12 ~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~iv~E~~~~   91 (273)
T d1mp8a_          12 GRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTL   91 (273)
T ss_dssp             EEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSCEEEEECCTT
T ss_pred             EEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCeEEEEEEeccC
Confidence            467899999999999872     35799999874333   3568999999999999999999999976 78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc--
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC--  490 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~--  490 (683)
                      |+|.+++.         .....+++..++.++.||+.||.|||+   .+||||||||+|||++.++.+||+|||+|+.  
T Consensus        92 g~l~~~~~---------~~~~~l~~~~~~~~~~qi~~gl~ylH~---~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~  159 (273)
T d1mp8a_          92 GELRSFLQ---------VRKYSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYME  159 (273)
T ss_dssp             EEHHHHHH---------HTTTTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECC--------
T ss_pred             CcHHhhhh---------ccCCCCCHHHHHHHHHHHHHHhhhhcc---cCeeccccchhheeecCCCcEEEccchhheecc
Confidence            99999874         234579999999999999999999999   6799999999999999999999999999853  


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCCCCCChhh
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLDL  545 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~  545 (683)
                                              ..++.++|||||||++|||+| |.+||.....     ...+..+......+.|..+
T Consensus       160 ~~~~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~-----~~~~~~i~~~~~~~~~~~~  234 (273)
T d1mp8a_         160 DSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN-----NDVIGRIENGERLPMPPNC  234 (273)
T ss_dssp             -----------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCG-----GGHHHHHHTTCCCCCCTTC
T ss_pred             CCcceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCH-----HHHHHHHHcCCCCCCCCCC
Confidence                                    457889999999999999998 8999875322     2334455566666778889


Q ss_pred             HHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          546 AEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       546 ~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      ++.+.+||.+||+.|  |.+|||+.+|++.|+.+...
T Consensus       235 ~~~~~~li~~cl~~d--p~~Rps~~ei~~~L~~i~~~  269 (273)
T d1mp8a_         235 PPTLYSLMTKCWAYD--PSRRPRFTELKAQLSTILEE  269 (273)
T ss_dssp             CHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCC--HhHCcCHHHHHHHHHHHHHH
Confidence            999999999999999  88999999999999988654

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-44  Score=371.00  Aligned_cols=220  Identities=22%  Similarity=0.329  Sum_probs=178.9

Q ss_pred             ccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc------ceeE
Q 005680          338 FSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE------LKCI  405 (683)
Q Consensus       338 F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~------~~~L  405 (683)
                      |..-.+.+|+|+||+||+|.+  ++..||||++....    ..+.|.+|+.+|++++|||||+++++|.+      ..||
T Consensus        10 y~~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~i   89 (270)
T d1t4ha_          10 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL   89 (270)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred             EEEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEE
Confidence            333334679999999999998  57899999987321    23568999999999999999999999843      4789


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccccc-CCCcEEEec
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD-RNLVAKISG  484 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld-~~~~~KL~D  484 (683)
                      |||||++|+|.+++.          ....+++..+..|+.||+.||.|||+.+ .+|+||||||+||||+ .++.+||+|
T Consensus        90 vmE~~~~g~L~~~l~----------~~~~~~~~~~~~~~~qi~~gl~yLH~~~-~~IiHrDiKp~NILl~~~~~~~Kl~D  158 (270)
T d1t4ha_          90 VTELMTSGTLKTYLK----------RFKVMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGD  158 (270)
T ss_dssp             EEECCCSCBHHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCSCCCGGGEEESSTTSCEEECC
T ss_pred             EEeCCCCCcHHHHHh----------ccccccHHHHHHHHHHHHHHHHHHHHCC-CCEEeCCcChhhceeeCCCCCEEEee
Confidence            999999999999993          4467999999999999999999999954 4499999999999996 579999999


Q ss_pred             CCCccc----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCC-CCCC
Q 005680          485 LGLNIC----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGN-AGIW  541 (683)
Q Consensus       485 FGla~~----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~-~~~~  541 (683)
                      ||+|+.                      +.++.++|||||||++|+|+||++||......    ......+..+. ...+
T Consensus       159 FGla~~~~~~~~~~~~GT~~Y~aPE~~~~~~~~~~DIwSlGvilyel~~g~~Pf~~~~~~----~~~~~~i~~~~~~~~~  234 (270)
T d1t4ha_         159 LGLATLKRASFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNA----AQIYRRVTSGVKPASF  234 (270)
T ss_dssp             TTGGGGCCTTSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSH----HHHHHHHTTTCCCGGG
T ss_pred             cCcceeccCCccCCcccCccccCHHHhCCCCCCcCchhhHHHHHHHHHHCCCCCCCcccH----HHHHHHHHcCCCCccc
Confidence            999864                      45889999999999999999999999642211    11222333322 2233


Q ss_pred             ChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          542 PLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       542 p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +..+++++.+|+.+||+.|  |.+|||+.|+++
T Consensus       235 ~~~~~~~~~~li~~~l~~d--p~~R~s~~ell~  265 (270)
T d1t4ha_         235 DKVAIPEVKEIIEGCIRQN--KDERYSIKDLLN  265 (270)
T ss_dssp             GGCCCHHHHHHHHHHSCSS--GGGSCCHHHHHT
T ss_pred             CccCCHHHHHHHHHHccCC--HhHCcCHHHHhC
Confidence            4456788999999999999  889999999875

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-43  Score=369.48  Aligned_cols=220  Identities=27%  Similarity=0.377  Sum_probs=186.8

Q ss_pred             cccccCCceEEEEEEE-CCeeEEEEEcC-CCCCHHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeecCCCCchhhh
Q 005680          343 RLKCAGDWTNVYRGRL-NHASVAIKTLN-NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYMPNGNLRDKL  419 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~-~g~~VAvK~l~-~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~~ggsL~~~L  419 (683)
                      +.+|+|+||.||+|.+ ++..||||+++ .....+.|.+|+.++++++|||||+++|+|.+ ..++||||+++|+|..++
T Consensus        23 ~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~lv~Ey~~~g~l~~~~  102 (285)
T d1fmka3          23 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFL  102 (285)
T ss_dssp             EEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTTCBHHHHH
T ss_pred             eEEeeCCCeEEEEEEECCCCEEEEEEECcccCCHHHHHHHHHHHHhcccCCEeEEEEEEecCCeEEEEEecCCCchhhhh
Confidence            4568999999999999 55789999998 34456789999999999999999999999976 789999999999999998


Q ss_pred             hhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---------
Q 005680          420 FTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---------  490 (683)
Q Consensus       420 ~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---------  490 (683)
                      ...        ....++|..++.|+.||+.||.|||+   .+|+||||||+|||||.++++||+|||+|+.         
T Consensus       103 ~~~--------~~~~l~~~~~~~i~~~i~~gl~~LH~---~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~~~~  171 (285)
T d1fmka3         103 KGE--------TGKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTAR  171 (285)
T ss_dssp             SHH--------HHTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCCTTC----------
T ss_pred             hhc--------ccccchHHHHHHHHHHHHHHHHHHhh---hheecccccceEEEECCCCcEEEcccchhhhccCCCceee
Confidence            533        33569999999999999999999999   6799999999999999999999999999853         


Q ss_pred             -----------------cCCCcccccccHHHHHHHHhhCC-CCchhhHHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHH
Q 005680          491 -----------------DQLNVRSDIRAFGTLLLHLLTGR-NWAGLVEKAMALDQTTLMQVLDGNAGIWPLDLAEELAGI  552 (683)
Q Consensus       491 -----------------~~~t~ksDVwSlGviL~eLltG~-~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~L  552 (683)
                                       ..++.++|||||||++|||+||. +|+...     .....+..+......+.+..+++++.+|
T Consensus       172 ~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~l~~l  246 (285)
T d1fmka3         172 QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM-----VNREVLDQVERGYRMPCPPECPESLHDL  246 (285)
T ss_dssp             ----CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC-----CHHHHHHHHHTTCCCCCCTTSCHHHHHH
T ss_pred             ccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCC-----CHHHHHHHHHhcCCCCCCcccCHHHHHH
Confidence                             45789999999999999999965 444432     1223334444455666788899999999


Q ss_pred             HHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          553 ALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       553 i~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      |.+||+.|  |..|||+.+|+..|+...
T Consensus       247 i~~cl~~d--P~~Rps~~~i~~~L~~~~  272 (285)
T d1fmka3         247 MCQCWRKE--PEERPTFEYLQAFLEDYF  272 (285)
T ss_dssp             HHHHTCSS--GGGSCCHHHHHHHHHTTT
T ss_pred             HHHHcccC--HhHCcCHHHHHHHHhhhh
Confidence            99999999  889999999998887643

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-43  Score=375.18  Aligned_cols=231  Identities=22%  Similarity=0.366  Sum_probs=184.9

Q ss_pred             cCccccccccccCCceEEEEEEEC--C-----eeEEEEEcCCC---CCHHHHHHHHHHHHhc-CCCCccceeccccc--c
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRLN--H-----ASVAIKTLNNG---LSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--L  402 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~~--g-----~~VAvK~l~~~---~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~  402 (683)
                      ++|. ..+++|+|+||+||+|++.  +     ..||||.+...   .....+.+|+.+|.++ +|||||+++|+|.+  .
T Consensus        37 ~~~~-l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~  115 (325)
T d1rjba_          37 ENLE-FGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGP  115 (325)
T ss_dssp             GGEE-EEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             HHeE-EeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCCe
Confidence            3443 3467899999999999972  2     36999998632   2345789999999998 89999999999976  7


Q ss_pred             eeEEEeecCCCCchhhhhhcccccc-------------cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCC
Q 005680          403 KCIVFEYMPNGNLRDKLFTSQRNYK-------------NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTP  469 (683)
Q Consensus       403 ~~LV~Ey~~ggsL~~~L~~~~~~~~-------------~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP  469 (683)
                      .|||||||+||+|.++|........             .......+++..++.|+.||+.||.|||+   ++||||||||
T Consensus       116 ~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~---~~IiHRDlKp  192 (325)
T d1rjba_         116 IYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF---KSCVHRDLAA  192 (325)
T ss_dssp             CEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHH---TTEEETTCSG
T ss_pred             EEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCch
Confidence            8999999999999999965421100             00123569999999999999999999999   7799999999


Q ss_pred             CcccccCCCcEEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHH
Q 005680          470 SSILLDRNLVAKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEK  521 (683)
Q Consensus       470 ~NILld~~~~~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~  521 (683)
                      +|||++.++.+||+|||+|+.                           ..++.++|||||||++|||+| |++||.....
T Consensus       193 ~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~  272 (325)
T d1rjba_         193 RNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPV  272 (325)
T ss_dssp             GGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC
T ss_pred             hccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCCH
Confidence            999999999999999999853                           457899999999999999998 8999964321


Q ss_pred             HhhhhHHHHHHHh-cCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHH
Q 005680          522 AMALDQTTLMQVL-DGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELD  577 (683)
Q Consensus       522 ~~~~~~~~~~~il-d~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~  577 (683)
                           ...+..++ .+...+.|..+++++.+||.+||+.|  |..|||+.+|++.|.
T Consensus       273 -----~~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~d--P~~RPt~~ei~~~L~  322 (325)
T d1rjba_         273 -----DANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFD--SRKRPSFPNLTSFLG  322 (325)
T ss_dssp             -----SHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHH
T ss_pred             -----HHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHcCCC--hhHCcCHHHHHHHHh
Confidence                 12222333 34556677889999999999999999  889999999999885

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-44  Score=372.04  Aligned_cols=218  Identities=19%  Similarity=0.256  Sum_probs=185.8

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcC-----CCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN-----NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~-----~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV  406 (683)
                      ++|. ..+++|+|+||.||+|..  +|+.||||++.     .......+.+|+.+|++++|||||++++++.+  ..|||
T Consensus         8 ~dy~-i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~iv   86 (288)
T d1uu3a_           8 EDFK-FGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFG   86 (288)
T ss_dssp             GGEE-EEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEE
T ss_pred             CCCE-EEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEE
Confidence            3453 446789999999999998  68999999986     23445789999999999999999999999966  78999


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      ||||+||+|.+++.          ....+++..+..++.||+.||.|||+   .+||||||||+||||+.++.+||+|||
T Consensus        87 mEy~~gg~L~~~~~----------~~~~l~e~~~~~~~~qi~~al~ylH~---~~iiHrDiKp~NIll~~~~~vkl~DFG  153 (288)
T d1uu3a_          87 LSYAKNGELLKYIR----------KIGSFDETCTRFYTAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFG  153 (288)
T ss_dssp             ECCCTTEEHHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCT
T ss_pred             EEccCCCCHHHhhh----------ccCCCCHHHHHHHHHHHHHHHHhhcc---ccEEcCcCCccccccCCCceEEecccc
Confidence            99999999999983          45679999999999999999999999   779999999999999999999999999


Q ss_pred             Cccc---------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCC
Q 005680          487 LNIC---------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG  539 (683)
Q Consensus       487 la~~---------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~  539 (683)
                      +|+.                           ..|+.++|||||||++|+|+||++||.....     ...+..+.. ...
T Consensus       154 ~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~-----~~~~~~i~~-~~~  227 (288)
T d1uu3a_         154 TAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE-----YLIFQKIIK-LEY  227 (288)
T ss_dssp             TCEECC----------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHT-TCC
T ss_pred             cceecccCCcccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcCH-----HHHHHHHHc-CCC
Confidence            9853                           3578999999999999999999999975321     122233333 334


Q ss_pred             CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          540 IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       540 ~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .+|..+++++.+||.+||+.|  |..|||+.|++..
T Consensus       228 ~~p~~~s~~~~~li~~~L~~d--P~~R~t~~e~~~~  261 (288)
T d1uu3a_         228 DFPEKFFPKARDLVEKLLVLD--ATKRLGCEEMEGY  261 (288)
T ss_dssp             CCCTTCCHHHHHHHHTTSCSS--GGGSTTSGGGTCH
T ss_pred             CCCccCCHHHHHHHHHHccCC--HhHCcCHHHHcCC
Confidence            567788999999999999999  8899999998664

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.4e-43  Score=371.78  Aligned_cols=236  Identities=24%  Similarity=0.403  Sum_probs=194.0

Q ss_pred             hhcCccccccccccCCceEEEEEEEC-------CeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc--
Q 005680          334 ATEDFSERFRLKCAGDWTNVYRGRLN-------HASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--  401 (683)
Q Consensus       334 at~~F~~~~~liG~G~fG~Vykg~~~-------g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--  401 (683)
                      ..++|... +.+|+|+||+||+|++.       ++.||||+++....   ...|.+|+.+|++++||||++++++|.+  
T Consensus        11 p~~~~~~~-~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~   89 (301)
T d1lufa_          11 PRNNIEYV-RDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGK   89 (301)
T ss_dssp             CGGGCEEE-EEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS
T ss_pred             CHHHcEEe-EEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeeeccCC
Confidence            45566544 56789999999999973       37899999974433   3579999999999999999999999976  


Q ss_pred             ceeEEEeecCCCCchhhhhhccccc--------------ccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccC
Q 005680          402 LKCIVFEYMPNGNLRDKLFTSQRNY--------------KNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSL  467 (683)
Q Consensus       402 ~~~LV~Ey~~ggsL~~~L~~~~~~~--------------~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDL  467 (683)
                      ..++||||+++|+|.++|.......              ........+++..++.|+.||+.||.|||+   .+||||||
T Consensus        90 ~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~---~~ivHrDl  166 (301)
T d1lufa_          90 PMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE---RKFVHRDL  166 (301)
T ss_dssp             SCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCC
T ss_pred             ceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhccc---CCeEeeEE
Confidence            7899999999999999996532110              001223469999999999999999999999   77999999


Q ss_pred             CCCcccccCCCcEEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhhCC-CCchhh
Q 005680          468 TPSSILLDRNLVAKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLTGR-NWAGLV  519 (683)
Q Consensus       468 KP~NILld~~~~~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLltG~-~Pf~~~  519 (683)
                      ||+|||||.++.+||+|||+|+.                           ..|+.++|||||||++|||++|. +||...
T Consensus       167 Kp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~  246 (301)
T d1lufa_         167 ATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGM  246 (301)
T ss_dssp             SGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS
T ss_pred             cccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCC
Confidence            99999999999999999999852                           35789999999999999999985 677653


Q ss_pred             HHHhhhhHHHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHH
Q 005680          520 EKAMALDQTTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVR  580 (683)
Q Consensus       520 ~~~~~~~~~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~  580 (683)
                      ..     ...+..+.++.....|..+++++.+|+.+||+.|  |..||||.+|++.|++|.
T Consensus       247 ~~-----~e~~~~v~~~~~~~~p~~~~~~~~~li~~cl~~~--P~~RPt~~ev~~~L~~i~  300 (301)
T d1lufa_         247 AH-----EEVIYYVRDGNILACPENCPLELYNLMRLCWSKL--PADRPSFCSIHRILQRMC  300 (301)
T ss_dssp             CH-----HHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHTT
T ss_pred             CH-----HHHHHHHHcCCCCCCCccchHHHHHHHHHHcCCC--hhHCcCHHHHHHHHHHhc
Confidence            22     3344556666677778889999999999999999  889999999999998863

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-43  Score=370.97  Aligned_cols=226  Identities=20%  Similarity=0.343  Sum_probs=189.9

Q ss_pred             CccccccccccCCceEEEEEEE--CCe----eEEEEEcCC---CCCHHHHHHHHHHHHhcCCCCccceeccccc-ceeEE
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL--NHA----SVAIKTLNN---GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIV  406 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~--~g~----~VAvK~l~~---~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV  406 (683)
                      +|.. .+++|+|+||+||+|.+  +|+    .||||.++.   ....+.|.+|+.+|++++|||||+++|+|.+ ..+++
T Consensus        10 dy~~-~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~v   88 (317)
T d1xkka_          10 EFKK-IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLI   88 (317)
T ss_dssp             TEEE-EEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEE
T ss_pred             HCEE-eeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeeEE
Confidence            4543 46789999999999998  343    699999863   2345789999999999999999999999977 78899


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      +||+.+|+|.+++.         .....+++..++.|+.||+.||.|||+   ++||||||||+||||+.++.+||+|||
T Consensus        89 ~e~~~~~~l~~~~~---------~~~~~~~~~~~~~i~~qi~~gl~yLH~---~~iiHrDlKp~NIll~~~~~~kl~DFG  156 (317)
T d1xkka_          89 TQLMPFGCLLDYVR---------EHKDNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDFG  156 (317)
T ss_dssp             EECCTTCBHHHHHH---------HTSSSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETTEEEECCCS
T ss_pred             EEeccCCccccccc---------ccccCCCHHHHHHHHHHHHHHHHHHHH---cCcccCcchhhcceeCCCCCeEeeccc
Confidence            99999999999885         345679999999999999999999999   679999999999999999999999999


Q ss_pred             Cccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhcCCC
Q 005680          487 LNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLDGNA  538 (683)
Q Consensus       487 la~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild~~~  538 (683)
                      +|+.                           +.++.++|||||||++|||+| |.+||.....     ......+..+..
T Consensus       157 la~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~-----~~~~~~i~~~~~  231 (317)
T d1xkka_         157 LAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEKGER  231 (317)
T ss_dssp             HHHHTTTTCC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCG-----GGHHHHHHHTCC
T ss_pred             cceecccccccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCH-----HHHHHHHHcCCC
Confidence            9753                           357899999999999999999 7889875322     122233344556


Q ss_pred             CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          539 GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       539 ~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      .+.|..+++.+.+|+.+||+.|  |..|||+.+|+..|..+...
T Consensus       232 ~~~p~~~~~~~~~li~~cl~~d--P~~RPs~~eil~~l~~~~~~  273 (317)
T d1xkka_         232 LPQPPICTIDVYMIMVKCWMID--ADSRPKFRELIIEFSKMARD  273 (317)
T ss_dssp             CCCCTTBCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHS
T ss_pred             CCCCcccCHHHHHHHHHhCCCC--hhhCcCHHHHHHHHHHHHhC
Confidence            6777889999999999999999  88999999999999988653

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=9.9e-44  Score=374.99  Aligned_cols=215  Identities=20%  Similarity=0.295  Sum_probs=180.0

Q ss_pred             ccccccccCCceEEEEEEE--CCeeEEEEEcCCCC-C----HHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeec
Q 005680          340 ERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-S----EEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYM  410 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-~----~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~  410 (683)
                      ...+.+|+|+||+||+|+.  +|..||||+++... .    .+.+.+|+.+|++++|||||+++++|.+  ..|||||||
T Consensus        18 ~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~   97 (309)
T d1u5ra_          18 SDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYC   97 (309)
T ss_dssp             EEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             EeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEEEec
Confidence            3346678999999999997  68999999987322 1    2468899999999999999999999965  789999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~  490 (683)
                      ++|+|..++          ....++++..+..|+.||+.||.|||+   ++||||||||+||||+.++.+||+|||+|+.
T Consensus        98 ~~g~l~~~~----------~~~~~l~e~~~~~i~~qi~~aL~yLH~---~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~  164 (309)
T d1u5ra_          98 LGSASDLLE----------VHKKPLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGSASI  164 (309)
T ss_dssp             SEEHHHHHH----------HHTSCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEEETTTEEEECCCTTCBS
T ss_pred             CCCchHHHH----------HhCCCCCHHHHHHHHHHHHHHHHHHHh---CCEeccCCCcceEEECCCCCEEEeecccccc
Confidence            999998776          345679999999999999999999999   7799999999999999999999999999864


Q ss_pred             ------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCC-CCCChhh
Q 005680          491 ------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNA-GIWPLDL  545 (683)
Q Consensus       491 ------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~-~~~p~~~  545 (683)
                                              ..|+.++|||||||++|||++|++||.....     ...+..+..... ...+..+
T Consensus       165 ~~~~~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~-----~~~~~~i~~~~~~~~~~~~~  239 (309)
T d1u5ra_         165 MAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA-----MSALYHIAQNESPALQSGHW  239 (309)
T ss_dssp             SSSBCCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH-----HHHHHHHHHSCCCCCSCTTS
T ss_pred             cCCCCccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCH-----HHHHHHHHhCCCCCCCCCCC
Confidence                                    2478899999999999999999999964322     222333443332 2334467


Q ss_pred             HHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          546 AEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       546 ~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ++.+.+|+.+||+.|  |..|||+.++++
T Consensus       240 s~~~~~li~~~L~~d--P~~Rpt~~ell~  266 (309)
T d1u5ra_         240 SEYFRNFVDSCLQKI--PQDRPTSEVLLK  266 (309)
T ss_dssp             CHHHHHHHHHHTCSS--GGGSCCHHHHTT
T ss_pred             CHHHHHHHHHHCcCC--hhHCcCHHHHHh
Confidence            899999999999999  889999999876

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.2e-43  Score=371.99  Aligned_cols=215  Identities=18%  Similarity=0.251  Sum_probs=173.7

Q ss_pred             ccccccccCCceEEEEEEE--CCeeEEEEEcCCC---CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCC
Q 005680          340 ERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG---LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPN  412 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~---~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~g  412 (683)
                      ...+++|+|+||+||+|..  +|+.||||++...   .....+.+|+.+|++++|||||++++++.+  ..|||||||+|
T Consensus        12 ~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE~~~g   91 (307)
T d1a06a_          12 DFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSG   91 (307)
T ss_dssp             EEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred             EEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCC
Confidence            4457789999999999998  5899999998732   233568899999999999999999999976  78999999999


Q ss_pred             CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccccc---CCCcEEEecCCCcc
Q 005680          413 GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD---RNLVAKISGLGLNI  489 (683)
Q Consensus       413 gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld---~~~~~KL~DFGla~  489 (683)
                      |+|.++|          .....+++..+..|+.||+.||.|||+   ++||||||||+|||++   .++.+||+|||+|+
T Consensus        92 g~L~~~l----------~~~~~l~e~~~~~~~~qi~~al~ylH~---~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~  158 (307)
T d1a06a_          92 GELFDRI----------VEKGFYTERDASRLIFQVLDAVKYLHD---LGIVHRDLKPENLLYYSLDEDSKIMISDFGLSK  158 (307)
T ss_dssp             CBHHHHH----------HTCSCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSTTCCEEECCC----
T ss_pred             CcHHHhh----------hcccCCCHHHHHHHHHHHHHHHHhhhh---ceeeeEEecccceeecccCCCceEEEeccceeE
Confidence            9999999          345679999999999999999999999   7799999999999994   57899999999985


Q ss_pred             c------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCC---CCCCC
Q 005680          490 C------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGN---AGIWP  542 (683)
Q Consensus       490 ~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~---~~~~p  542 (683)
                      .                        ..|+.++|||||||++|+|+||++||.....     ......+....   ..+.+
T Consensus       159 ~~~~~~~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~-----~~~~~~i~~~~~~~~~~~~  233 (307)
T d1a06a_         159 MEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDEND-----AKLFEQILKAEYEFDSPYW  233 (307)
T ss_dssp             --------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-----HHHHHHHHTTCCCCCTTTT
T ss_pred             EccCCCeeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCH-----HHHHHHHhccCCCCCCccc
Confidence            3                        3589999999999999999999999964322     12223333332   22334


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ..+++++.+|+.+||+.|  |..|||+.++++
T Consensus       234 ~~~s~~~~~li~~~L~~d--P~~R~s~~eil~  263 (307)
T d1a06a_         234 DDISDSAKDFIRHLMEKD--PEKRFTCEQALQ  263 (307)
T ss_dssp             TTSCHHHHHHHHHHSCSS--GGGSCCHHHHHH
T ss_pred             cCCCHHHHHHHHHHccCC--HhHCcCHHHHhc
Confidence            578899999999999999  889999999865

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-43  Score=368.62  Aligned_cols=222  Identities=23%  Similarity=0.378  Sum_probs=185.9

Q ss_pred             cccccCCceEEEEEEEC-----CeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc---ceeEEEeecC
Q 005680          343 RLKCAGDWTNVYRGRLN-----HASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE---LKCIVFEYMP  411 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~-----g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~---~~~LV~Ey~~  411 (683)
                      +++|+|+||+||+|.+.     ...||||+++....   .+.|.+|+.+|++++|||||+++|+|.+   ..++|||||+
T Consensus        33 ~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~~  112 (311)
T d1r0pa_          33 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMK  112 (311)
T ss_dssp             EEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECCT
T ss_pred             eEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEee
Confidence            46899999999999982     23699999973333   3579999999999999999999999853   6789999999


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc-
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC-  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~-  490 (683)
                      +|+|.+++.         .....+++..++.++.|++.||.|||+   .+|+||||||+||||++++.+||+|||+++. 
T Consensus       113 ~g~l~~~~~---------~~~~~~~~~~~~~i~~qia~gL~~lH~---~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~  180 (311)
T d1r0pa_         113 HGDLRNFIR---------NETHNPTVKDLIGFGLQVAKGMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDM  180 (311)
T ss_dssp             TCBHHHHHH---------CTTCCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECSSGGGCCT
T ss_pred             cCchhhhhc---------cccccchHHHHHHHHHHHHHhhhhhcc---cCcccCCccHHhEeECCCCCEEEecccchhhc
Confidence            999999985         344567889999999999999999999   7799999999999999999999999999853 


Q ss_pred             ----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCC
Q 005680          491 ----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWP  542 (683)
Q Consensus       491 ----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p  542 (683)
                                                  ..++.++||||||+++|||+||..||.....    .......+..+..+..|
T Consensus       181 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~----~~~~~~~i~~g~~~~~p  256 (311)
T d1r0pa_         181 YDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVN----TFDITVYLLQGRRLLQP  256 (311)
T ss_dssp             TTTTCCCTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC----------CHHHHHTTCCCCCC
T ss_pred             cccccccceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCC----HHHHHHHHHcCCCCCCc
Confidence                                        3578899999999999999997766643221    11223345555666777


Q ss_pred             hhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          543 LDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       543 ~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      ..+++.+.+|+.+||+.|  |..|||+.+|++.|+.+...
T Consensus       257 ~~~~~~l~~li~~cl~~d--P~~RPs~~ei~~~L~~i~~~  294 (311)
T d1r0pa_         257 EYCPDPLYEVMLKCWHPK--AEMRPSFSELVSRISAIFST  294 (311)
T ss_dssp             TTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHT
T ss_pred             ccCcHHHHHHHHHHcCCC--HhHCcCHHHHHHHHHHHHHh
Confidence            888999999999999999  88999999999999999764

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-42  Score=362.57  Aligned_cols=217  Identities=23%  Similarity=0.295  Sum_probs=180.2

Q ss_pred             CccccccccccCCceEEEEEEE--CCeeEEEEEcCC--------CCCHHHHHHHHHHHHhcCCCCccceeccccc--cee
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN--------GLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKC  404 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~--------~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~  404 (683)
                      +++...+.+|+|+||+||+|..  +|+.||||++..        ....+.+.+|+.+|++++|||||+++++|.+  ..|
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~   89 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   89 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            3344456789999999999998  589999999862        1235789999999999999999999999976  789


Q ss_pred             EEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCC----cE
Q 005680          405 IVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL----VA  480 (683)
Q Consensus       405 LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~----~~  480 (683)
                      ||||||+||+|.++|.          ....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++    .+
T Consensus        90 iv~E~~~gg~L~~~i~----------~~~~l~~~~~~~~~~qi~~al~yLH~---~~ivHrDiKp~Nill~~~~~~~~~v  156 (293)
T d1jksa_          90 LILELVAGGELFDFLA----------EKESLTEEEATEFLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRI  156 (293)
T ss_dssp             EEEECCCSCBHHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCSSSSSCCE
T ss_pred             EEEEcCCCccccchhc----------cccccchhHHHHHHHHHHHHHHhhhh---cceeecccccceEEEecCCCcccce
Confidence            9999999999999994          44579999999999999999999999   7799999999999998776    59


Q ss_pred             EEecCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC
Q 005680          481 KISGLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG  536 (683)
Q Consensus       481 KL~DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~  536 (683)
                      ||+|||+|..                        ..++.++|||||||++|+|+||++||.....     ...+..+...
T Consensus       157 kl~DfG~a~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~-----~~~~~~i~~~  231 (293)
T d1jksa_         157 KIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK-----QETLANVSAV  231 (293)
T ss_dssp             EECCCTTCEECTTSCBCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHTT
T ss_pred             EecchhhhhhcCCCccccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCCH-----HHHHHHHHhc
Confidence            9999999853                        3578999999999999999999999964322     1222233332


Q ss_pred             CCCCCC----hhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          537 NAGIWP----LDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       537 ~~~~~p----~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                       ...++    ..+++.+.+||.+||+.|  |.+|||+.++++
T Consensus       232 -~~~~~~~~~~~~s~~~~~li~~~L~~d--P~~R~s~~eil~  270 (293)
T d1jksa_         232 -NYEFEDEYFSNTSALAKDFIRRLLVKD--PKKRMTIQDSLQ  270 (293)
T ss_dssp             -CCCCCHHHHTTSCHHHHHHHHTTSCSS--GGGSCCHHHHHH
T ss_pred             -CCCCCchhcCCCCHHHHHHHHHHccCC--hhHCcCHHHHhc
Confidence             12222    356789999999999999  889999999865

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-42  Score=365.65  Aligned_cols=231  Identities=23%  Similarity=0.383  Sum_probs=189.4

Q ss_pred             ccccccCCceEEEEEEE--CCe--eEEEEEcCC---CCCHHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEEeecC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHA--SVAIKTLNN---GLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVFEYMP  411 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~--~VAvK~l~~---~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~Ey~~  411 (683)
                      .+.+|+|+||.||+|.+  +|.  .||||++..   ....+.|.+|+.+|+++ +|||||+++|+|.+  ..+|||||++
T Consensus        15 ~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV~ey~~   94 (309)
T d1fvra_          15 QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAP   94 (309)
T ss_dssp             EEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEEECCCT
T ss_pred             EEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEEEEecC
Confidence            35789999999999998  444  588888762   22345799999999999 79999999999966  7899999999


Q ss_pred             CCCchhhhhhccccc------ccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecC
Q 005680          412 NGNLRDKLFTSQRNY------KNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGL  485 (683)
Q Consensus       412 ggsL~~~L~~~~~~~------~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DF  485 (683)
                      ||+|.++|.......      ........+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+||+||
T Consensus        95 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~---~~iiHrDlkp~NIL~~~~~~~kl~Df  171 (309)
T d1fvra_          95 HGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADF  171 (309)
T ss_dssp             TCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECGGGCEEECCT
T ss_pred             CCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhc---CCccccccccceEEEcCCCceEEccc
Confidence            999999996431100      000234679999999999999999999999   77999999999999999999999999


Q ss_pred             CCccc------------------------cCCCcccccccHHHHHHHHhhCC-CCchhhHHHhhhhHHHHHHHhcCCCCC
Q 005680          486 GLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGR-NWAGLVEKAMALDQTTLMQVLDGNAGI  540 (683)
Q Consensus       486 Gla~~------------------------~~~t~ksDVwSlGviL~eLltG~-~Pf~~~~~~~~~~~~~~~~ild~~~~~  540 (683)
                      |+|+.                        ..++.++|||||||++|||++|. +||....     ....+..+..+..+.
T Consensus       172 G~a~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~-----~~~~~~~i~~~~~~~  246 (309)
T d1fvra_         172 GLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT-----CAELYEKLPQGYRLE  246 (309)
T ss_dssp             TCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC-----HHHHHHHGGGTCCCC
T ss_pred             cccccccccccccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCCC-----HHHHHHHHHhcCCCC
Confidence            99853                        45789999999999999999975 5665422     122334455566677


Q ss_pred             CChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          541 WPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       541 ~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      .|..+++++.+||.+||+.|  |++||||.+|++.|+.+.+.
T Consensus       247 ~~~~~~~~~~~li~~cl~~d--P~~RPs~~eil~~L~~i~~~  286 (309)
T d1fvra_         247 KPLNCDDEVYDLMRQCWREK--PYERPSFAQILVSLNRMLEE  286 (309)
T ss_dssp             CCTTBCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHHS
T ss_pred             CCccCCHHHHHHHHHHcCCC--hhHCcCHHHHHHHHHHHHhc
Confidence            78889999999999999999  88999999999999998764

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-43  Score=371.93  Aligned_cols=226  Identities=20%  Similarity=0.236  Sum_probs=181.0

Q ss_pred             hcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC---CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEE
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG---LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVF  407 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~---~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~  407 (683)
                      .++|... +.+|+|+||+||+|.+  +|..||||+++..   .....+.+|+.+|++++|||||+++++|.+  ..||||
T Consensus         5 ~d~y~~~-~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVm   83 (322)
T d1s9ja_           5 DDDFEKI-SELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICM   83 (322)
T ss_dssp             GGGEEEE-EEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ccCCEEE-EEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            4566554 5678999999999998  6899999998732   234678999999999999999999999966  789999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCC
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL  487 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGl  487 (683)
                      |||+||+|.+++.          ....+++..+..++.||+.||.|||+.  .+|+||||||+||||+.+|.+||+|||+
T Consensus        84 Ey~~gg~L~~~l~----------~~~~l~~~~~~~~~~qil~aL~yLH~~--~~IiHRDiKP~NILl~~~~~vkl~DFGl  151 (322)
T d1s9ja_          84 EHMDGGSLDQVLK----------KAGRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGV  151 (322)
T ss_dssp             ECCTTEEHHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHHH--HCCCCSCCSGGGEEECTTCCEEECCCCC
T ss_pred             EcCCCCcHHHHHh----------hcCCCCHHHHHHHHHHHHHHHHHHHHh--CCEEccccCHHHeeECCCCCEEEeeCCC
Confidence            9999999999994          445799999999999999999999972  2599999999999999999999999999


Q ss_pred             ccc-----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHh---hh----------------
Q 005680          488 NIC-----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAM---AL----------------  525 (683)
Q Consensus       488 a~~-----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~---~~----------------  525 (683)
                      |+.                       ..|+.++|||||||++|||+||+.||.......   ..                
T Consensus       152 a~~~~~~~~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (322)
T d1s9ja_         152 SGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPR  231 (322)
T ss_dssp             CHHHHHHTC---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCTTHHHHHC----------------
T ss_pred             ccccCCCccccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhcCCcccCCcccc
Confidence            853                       468999999999999999999999995321100   00                


Q ss_pred             ------------------hHHHHHHHhcCCCCCCC-hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          526 ------------------DQTTLMQVLDGNAGIWP-LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       526 ------------------~~~~~~~ild~~~~~~p-~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                                        .......+.....+..| ...+.++.+|+.+||..|  |.+|||+.++++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~d--P~~R~ta~e~L~H  298 (322)
T d1s9ja_         232 TPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKN--PAERADLKQLMVH  298 (322)
T ss_dssp             --------------CCCCHHHHHHHHHTSCCCCCCBTTBCHHHHHHHHHHTCSS--TTTSCCHHHHHTS
T ss_pred             cccccccccccccccchhHHHHHhhhhccCCccCccccCCHHHHHHHHHHcCCC--hhHCcCHHHHhhC
Confidence                              00001111111112222 235788999999999999  8899999999874

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-43  Score=361.37  Aligned_cols=219  Identities=22%  Similarity=0.307  Sum_probs=177.8

Q ss_pred             ccccccCCceEEEEEEEC---C--eeEEEEEcCCC-----CCHHHHHHHHHHHHhcCCCCccceeccccc-ceeEEEeec
Q 005680          342 FRLKCAGDWTNVYRGRLN---H--ASVAIKTLNNG-----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE-LKCIVFEYM  410 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~---g--~~VAvK~l~~~-----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-~~~LV~Ey~  410 (683)
                      .+.+|+|+||.||+|.+.   +  ..||||++...     ...+.|.+|+.+|++++|||||+++|+|.+ ..++||||+
T Consensus        13 ~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~~~~~lv~e~~   92 (273)
T d1u46a_          13 LEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKMVTELA   92 (273)
T ss_dssp             EEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECC
T ss_pred             EEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeecchheeeeee
Confidence            345789999999999872   2  47999998732     123579999999999999999999999977 679999999


Q ss_pred             CCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc
Q 005680          411 PNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC  490 (683)
Q Consensus       411 ~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~  490 (683)
                      ++|+|.+++.         .....+++..++.++.||+.||.|||+   ++|+||||||+||||+.++.+||+|||+++.
T Consensus        93 ~~~~l~~~~~---------~~~~~l~~~~~~~~~~qi~~gl~ylH~---~~iiHrDikp~NIll~~~~~vkl~DfGl~~~  160 (273)
T d1u46a_          93 PLGSLLDRLR---------KHQGHFLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIGDFGLMRA  160 (273)
T ss_dssp             TTCBHHHHHH---------HHGGGSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEETTEEEECCCTTCEE
T ss_pred             cCcchhhhhh---------cccCCCCHHHHHHHHHHHHHHHHHhhh---CCEeeeeecHHHhccccccceeeccchhhhh
Confidence            9999999885         234569999999999999999999999   7799999999999999999999999999864


Q ss_pred             ----------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHHHhc-CCCCC
Q 005680          491 ----------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQVLD-GNAGI  540 (683)
Q Consensus       491 ----------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~ild-~~~~~  540 (683)
                                                  ..++.++|||||||++|||+| |++||.....     ...+..+.. +...+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~-----~~~~~~i~~~~~~~~  235 (273)
T d1u46a_         161 LPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNG-----SQILHKIDKEGERLP  235 (273)
T ss_dssp             CCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCH-----HHHHHHHHTSCCCCC
T ss_pred             cccCCCcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCH-----HHHHHHHHhCCCCCC
Confidence                                        246778999999999999998 8999965322     222333333 34556


Q ss_pred             CChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          541 WPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       541 ~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                      .+..++..+.+|+.+||+.|  |..|||+.+|++.|++.
T Consensus       236 ~~~~~~~~l~~li~~cl~~d--p~~RPt~~ei~~~L~~~  272 (273)
T d1u46a_         236 RPEDCPQDIYNVMVQCWAHK--PEDRPTFVALRDFLLEA  272 (273)
T ss_dssp             CCTTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHH
T ss_pred             CcccccHHHHHHHHHHcCCC--hhHCcCHHHHHHHHHhc
Confidence            67788999999999999999  88999999999888764

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=1e-42  Score=373.69  Aligned_cols=216  Identities=19%  Similarity=0.290  Sum_probs=180.8

Q ss_pred             ccccccccCCceEEEEEEE--CCeeEEEEEcCCCC--CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          340 ERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL--SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~--~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      ...+.+|+|+||.||+|..  +|+.||||+++...  ....+.+|+.+|++++|||||+++++|.+  ..|||||||+||
T Consensus        32 ~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg  111 (352)
T d1koba_          32 DILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGG  111 (352)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECCCCC
T ss_pred             EEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCC
Confidence            4557789999999999998  68999999987433  23568899999999999999999999966  789999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccccc--CCCcEEEecCCCccc-
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD--RNLVAKISGLGLNIC-  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld--~~~~~KL~DFGla~~-  490 (683)
                      +|.+++.         .....+++..++.|+.||+.||.|||+   .+||||||||+||||+  .++.+||+|||+|+. 
T Consensus       112 ~L~~~~~---------~~~~~l~e~~~~~i~~qi~~aL~ylH~---~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~  179 (352)
T d1koba_         112 ELFDRIA---------AEDYKMSEAEVINYMRQACEGLKHMHE---HSIVHLDIKPENIMCETKKASSVKIIDFGLATKL  179 (352)
T ss_dssp             BHHHHTT---------CTTCCBCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSTTCCCEEECCCTTCEEC
T ss_pred             hHHHHHH---------hcCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecccccccccccccCCCeEEEeecccceec
Confidence            9998873         234569999999999999999999999   7799999999999998  578999999999853 


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCC---CCCCChh
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGN---AGIWPLD  544 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~---~~~~p~~  544 (683)
                                             ..++.++|||||||++|+|+||++||.....     ...+..+....   ....+..
T Consensus       180 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~-----~~~~~~i~~~~~~~~~~~~~~  254 (352)
T d1koba_         180 NPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDD-----LETLQNVKRCDWEFDEDAFSS  254 (352)
T ss_dssp             CTTSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH-----HHHHHHHHHCCCCCCSSTTTT
T ss_pred             CCCCceeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHHHhCCCCCCcccccC
Confidence                                   3588999999999999999999999965322     12223333321   2233456


Q ss_pred             hHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          545 LAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +++++.+||.+||+.|  |..|||+.++++
T Consensus       255 ~s~~~~~li~~~L~~d--p~~R~s~~eil~  282 (352)
T d1koba_         255 VSPEAKDFIKNLLQKE--PRKRLTVHDALE  282 (352)
T ss_dssp             SCHHHHHHHHTTSCSS--GGGSCCHHHHHT
T ss_pred             CCHHHHHHHHHHccCC--hhHCcCHHHHhc
Confidence            8899999999999999  889999999865

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=3.1e-42  Score=358.02  Aligned_cols=217  Identities=21%  Similarity=0.264  Sum_probs=180.9

Q ss_pred             CccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC----C-------HHHHHHHHHHHHhcC-CCCccceeccccc-
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----S-------EEDFQAKVSFLTAVR-HPHLVAVMGCCSE-  401 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~-------~~~~~~Ev~iL~~l~-HpnIV~l~g~~~~-  401 (683)
                      +| +..+.+|+|+||+||+|+.  +|+.||||+++...    .       .+.+.+|+.+|++++ |||||++++++.+ 
T Consensus         4 ~y-~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~   82 (277)
T d1phka_           4 NY-EPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN   82 (277)
T ss_dssp             TE-EEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             cC-EEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC
Confidence            44 3456789999999999998  78999999986221    1       135889999999997 9999999999976 


Q ss_pred             -ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcE
Q 005680          402 -LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVA  480 (683)
Q Consensus       402 -~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~  480 (683)
                       ..|||||||+||||.++|.          ....+++..+..|+.||+.||.|||+   .+|+||||||+||||+.++.+
T Consensus        83 ~~~~ivmE~~~~g~L~~~l~----------~~~~l~e~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~Nill~~~~~~  149 (277)
T d1phka_          83 TFFFLVFDLMKKGELFDYLT----------EKVTLSEKETRKIMRALLEVICALHK---LNIVHRDLKPENILLDDDMNI  149 (277)
T ss_dssp             SEEEEEEECCTTCBHHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCE
T ss_pred             cceEEEEEcCCCchHHHHHH----------hcCCCCHHHHHHHHHHHHHHHHHHHH---cCCcccccccceEEEcCCCCe
Confidence             7899999999999999994          44679999999999999999999999   679999999999999999999


Q ss_pred             EEecCCCccc------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHH
Q 005680          481 KISGLGLNIC------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTL  530 (683)
Q Consensus       481 KL~DFGla~~------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~  530 (683)
                      ||+|||+++.                              ..++.++||||+||++|+|+||++||.....     ....
T Consensus       150 kl~DFG~a~~~~~~~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~-----~~~~  224 (277)
T d1phka_         150 KLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQ-----MLML  224 (277)
T ss_dssp             EECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHH
T ss_pred             EEccchheeEccCCCceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCCH-----HHHH
Confidence            9999999853                              1357899999999999999999999975322     2222


Q ss_pred             HHHhcCC---CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          531 MQVLDGN---AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       531 ~~ild~~---~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      ..+....   ....+..+++++.+|+.+||+.|  |.+|||+.+|++
T Consensus       225 ~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~--p~~R~s~~eil~  269 (277)
T d1phka_         225 RMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQ--PQKRYTAEEALA  269 (277)
T ss_dssp             HHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSS--GGGSCCHHHHTT
T ss_pred             HHHHhCCCCCCCcccccCCHHHHHHHHHHccCC--hhHCcCHHHHHc
Confidence            3333332   22233478899999999999999  889999998864

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-42  Score=367.48  Aligned_cols=217  Identities=24%  Similarity=0.292  Sum_probs=183.9

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcC-----CCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN-----NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~-----~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV  406 (683)
                      ++|.. .+++|+|+||.||+|..  +|+.||||+++     .......+.+|+.+|++++|||||++++++.+  ..|+|
T Consensus         5 ~dy~~-~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv   83 (337)
T d1o6la_           5 NDFDY-LKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             GGEEE-EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred             HhcEE-EEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccc
Confidence            45544 46788999999999998  68999999986     23345778999999999999999999999977  78999


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      ||||+||+|.+++          .....+++..+..|+.||+.||.|||+   ++||||||||+||||+.+|.+||+|||
T Consensus        84 ~ey~~gg~L~~~~----------~~~~~~~e~~~~~~~~qil~al~ylH~---~~iiHRDlKP~NILl~~~g~vkl~DFG  150 (337)
T d1o6la_          84 MEYANGGELFFHL----------SRERVFTEERARFYGAEIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFG  150 (337)
T ss_dssp             EECCTTCBHHHHH----------HHHSCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCT
T ss_pred             eeccCCCchhhhh----------hcccCCcHHHHHHHHHHHhhhhhhhhh---cCccccccCHHHeEecCCCCEEEeecc
Confidence            9999999999999          355679999999999999999999999   779999999999999999999999999


Q ss_pred             Cccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCC
Q 005680          487 LNIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIW  541 (683)
Q Consensus       487 la~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~  541 (683)
                      +|+.                         ..|+.++|||||||++|||+||++||.....     ...+..+. .....+
T Consensus       151 ~a~~~~~~~~~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~-----~~~~~~i~-~~~~~~  224 (337)
T d1o6la_         151 LCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH-----ERLFELIL-MEEIRF  224 (337)
T ss_dssp             TCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHH-HCCCCC
T ss_pred             cccccccCCcccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcCH-----HHHHHHHh-cCCCCC
Confidence            9853                         3588999999999999999999999975322     11222222 234567


Q ss_pred             ChhhHHHHHHHHHHhhhcCCCcccccc-----HHHHHH
Q 005680          542 PLDLAEELAGIALKCLSADQDANRDLR-----IAGVMK  574 (683)
Q Consensus       542 p~~~~~~l~~Li~~CL~~dP~p~~RPs-----~~eVl~  574 (683)
                      |..+++++.+||.+||++|  |.+||+     +.++++
T Consensus       225 p~~~s~~~~dli~~~L~~d--P~~R~~~~~~~~~eil~  260 (337)
T d1o6la_         225 PRTLSPEAKSLLAGLLKKD--PKQRLGGGPSDAKEVME  260 (337)
T ss_dssp             CTTSCHHHHHHHHHHTCSS--TTTSTTCSTTTHHHHHT
T ss_pred             CccCCHHHHHHHHhhccCC--chhhcccccccHHHHHc
Confidence            7889999999999999999  779995     566654

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-42  Score=361.70  Aligned_cols=233  Identities=21%  Similarity=0.310  Sum_probs=192.5

Q ss_pred             cCccccccccccCCceEEEEEEEC-------CeeEEEEEcCCCCCH---HHHHHHHHHHHhcCCCCccceeccccc--ce
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRLN-------HASVAIKTLNNGLSE---EDFQAKVSFLTAVRHPHLVAVMGCCSE--LK  403 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~~-------g~~VAvK~l~~~~~~---~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~  403 (683)
                      ++|. ..+.+|+|+||.||+|.+.       +..||||+++.....   ..|.+|+.++++++|||||+++|+|..  ..
T Consensus        20 ~~~~-l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~   98 (308)
T d1p4oa_          20 EKIT-MSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPT   98 (308)
T ss_dssp             GGEE-EEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSC
T ss_pred             HHeE-EeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCCce
Confidence            3443 3466789999999999873       468999999844433   358899999999999999999999965  88


Q ss_pred             eEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEe
Q 005680          404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKIS  483 (683)
Q Consensus       404 ~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~  483 (683)
                      ++||||+++|+|.+++...............+++..+..|+.||+.||.|||+   ++|+||||||+|||||.++++||+
T Consensus        99 ~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~---~~ivHrDlk~~NiLld~~~~~Kl~  175 (308)
T d1p4oa_          99 LVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIG  175 (308)
T ss_dssp             EEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCSGGGEEECTTCCEEEC
T ss_pred             eEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhh---CCeeeceEcCCceeecCCceEEEe
Confidence            99999999999999986543221111233468999999999999999999999   679999999999999999999999


Q ss_pred             cCCCccc---------------------------cCCCcccccccHHHHHHHHhhCC-CCchhhHHHhhhhHHHHHHHhc
Q 005680          484 GLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLTGR-NWAGLVEKAMALDQTTLMQVLD  535 (683)
Q Consensus       484 DFGla~~---------------------------~~~t~ksDVwSlGviL~eLltG~-~Pf~~~~~~~~~~~~~~~~ild  535 (683)
                      |||+|+.                           ..++.++|||||||++|||+||. +||....     ....+..+.+
T Consensus       176 DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~-----~~~~~~~i~~  250 (308)
T d1p4oa_         176 DFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLS-----NEQVLRFVME  250 (308)
T ss_dssp             CTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSC-----HHHHHHHHHT
T ss_pred             ecccceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCCC-----HHHHHHHHHh
Confidence            9999863                           35788999999999999999985 7775432     2334455666


Q ss_pred             CCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHH
Q 005680          536 GNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEV  579 (683)
Q Consensus       536 ~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l  579 (683)
                      +.....|..+++.+.+|+.+||+.|  |..|||+.+|++.|+..
T Consensus       251 ~~~~~~p~~~~~~l~~li~~cl~~~--P~~RPs~~~il~~L~~~  292 (308)
T d1p4oa_         251 GGLLDKPDNCPDMLFELMRMCWQYN--PKMRPSFLEIISSIKEE  292 (308)
T ss_dssp             TCCCCCCTTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHGGG
T ss_pred             CCCCCCcccchHHHHHHHHHHcCCC--hhHCcCHHHHHHHHHHh
Confidence            6677778889999999999999999  88999999999988665

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=3e-42  Score=369.67  Aligned_cols=219  Identities=21%  Similarity=0.303  Sum_probs=181.0

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC--CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEee
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL--SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEY  409 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~--~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey  409 (683)
                      ++|.. .+.+|+|+||.||+|..  +|+.||||++....  ..+.+.+|+.+|++++|||||++++++.+  ..||||||
T Consensus        26 ~~Y~i-~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~  104 (350)
T d1koaa2          26 DHYDI-HEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF  104 (350)
T ss_dssp             GTEEE-EEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             cCeEE-EEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEc
Confidence            45543 46789999999999998  68999999997432  24678899999999999999999999866  88999999


Q ss_pred             cCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC--CCcEEEecCCC
Q 005680          410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR--NLVAKISGLGL  487 (683)
Q Consensus       410 ~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~--~~~~KL~DFGl  487 (683)
                      |+||+|.+++.         .....+++..+..|+.||+.||.|||+   .+||||||||+||||+.  ++.+||+|||+
T Consensus       105 ~~gg~L~~~l~---------~~~~~l~e~~~~~i~~qi~~aL~ylH~---~~iiHrDiKp~NIll~~~~~~~vkL~DFG~  172 (350)
T d1koaa2         105 MSGGELFEKVA---------DEHNKMSEDEAVEYMRQVCKGLCHMHE---NNYVHLDLKPENIMFTTKRSNELKLIDFGL  172 (350)
T ss_dssp             CCSCBHHHHHT---------CTTSCBCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSTTSCCEEECCCTT
T ss_pred             CCCCCHHHHHH---------hhcCCCCHHHHHHHHHHHHHHHHHHHh---cCCeeeeechhHeeeccCCCCeEEEeecch
Confidence            99999999984         234569999999999999999999999   77999999999999954  68999999999


Q ss_pred             ccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCC---CCC
Q 005680          488 NIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGN---AGI  540 (683)
Q Consensus       488 a~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~---~~~  540 (683)
                      |+.                        ..++.++|||||||++|+|+||++||.....     ...+..+....   ...
T Consensus       173 a~~~~~~~~~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~-----~~~~~~i~~~~~~~~~~  247 (350)
T d1koaa2         173 TAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEND-----DETLRNVKSCDWNMDDS  247 (350)
T ss_dssp             CEECCTTSCEEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHTCCCSCCG
T ss_pred             heecccccccceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCH-----HHHHHHHHhCCCCCCcc
Confidence            853                        3578899999999999999999999964321     22233333322   122


Q ss_pred             CChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          541 WPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       541 ~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .+..+++.+.+||.+||+.|  |.+|||+.++++
T Consensus       248 ~~~~~s~~~~~li~~~L~~d--P~~R~t~~eil~  279 (350)
T d1koaa2         248 AFSGISEDGKDFIRKLLLAD--PNTRMTIHQALE  279 (350)
T ss_dssp             GGGGCCHHHHHHHHHHCCSS--GGGSCCHHHHHH
T ss_pred             cccCCCHHHHHHHHHHccCC--hhHCcCHHHHhc
Confidence            23467889999999999999  889999999865

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-42  Score=358.96  Aligned_cols=236  Identities=21%  Similarity=0.324  Sum_probs=180.8

Q ss_pred             cCccccccccccCCceEEEEEEE-------CCeeEEEEEcCCCCC---HHHHHHHHHHHHhc-CCCCccceeccccc---
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL-------NHASVAIKTLNNGLS---EEDFQAKVSFLTAV-RHPHLVAVMGCCSE---  401 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~-------~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~---  401 (683)
                      ++|.- .+.+|+|+||.||+|.+       +++.||||+++....   ...+.+|+.++.++ +|||||.+++++.+   
T Consensus        13 ~~y~~-~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~   91 (299)
T d1ywna1          13 DRLKL-GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG   91 (299)
T ss_dssp             GGEEE-EEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTS
T ss_pred             HHEEE-eeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccCCC
Confidence            34433 46778999999999997       236899999974333   35677888888887 68999999998854   


Q ss_pred             ceeEEEeecCCCCchhhhhhccccccc------ccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccccc
Q 005680          402 LKCIVFEYMPNGNLRDKLFTSQRNYKN------CSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD  475 (683)
Q Consensus       402 ~~~LV~Ey~~ggsL~~~L~~~~~~~~~------~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld  475 (683)
                      ..++|||||++|+|.++|.........      ......+++..++.|+.||+.||.|||+   ++||||||||+||||+
T Consensus        92 ~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~---~~ivHrDlKp~NILl~  168 (299)
T d1ywna1          92 PLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLS  168 (299)
T ss_dssp             CCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEC
T ss_pred             eEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHh---CCCcCCcCCccceeEC
Confidence            579999999999999999754321110      0123469999999999999999999999   7799999999999999


Q ss_pred             CCCcEEEecCCCccc---------------------------cCCCcccccccHHHHHHHHhhC-CCCchhhHHHhhhhH
Q 005680          476 RNLVAKISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLTG-RNWAGLVEKAMALDQ  527 (683)
Q Consensus       476 ~~~~~KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLltG-~~Pf~~~~~~~~~~~  527 (683)
                      .++.+||+|||+|+.                           ..++.++|||||||++|||+|| .+||....    ...
T Consensus       169 ~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~----~~~  244 (299)
T d1ywna1         169 EKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK----IDE  244 (299)
T ss_dssp             GGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC----CSH
T ss_pred             CCCcEEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCC----HHH
Confidence            999999999999853                           3578999999999999999996 56775422    112


Q ss_pred             HHHHHHhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHH
Q 005680          528 TTLMQVLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRK  581 (683)
Q Consensus       528 ~~~~~ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~  581 (683)
                      .....+..+.....|..+++++.+|+.+||+.|  |.+|||+.+|++.|+.+.+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~d--P~~Rpt~~eil~~L~~ilq  296 (299)
T d1ywna1         245 EFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGE--PSQRPTFSELVEHLGNLLQ  296 (299)
T ss_dssp             HHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCCccCCHHHHHHHHHHcCCC--hhHCcCHHHHHHHHHHHHh
Confidence            222334445566777788999999999999999  8899999999999998864

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8e-42  Score=361.35  Aligned_cols=217  Identities=25%  Similarity=0.357  Sum_probs=182.9

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcC-----CCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN-----NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~-----~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV  406 (683)
                      ++|. ..+.+|+|+||+||+|+.  +|+.||||+++     .....+.+.+|+.+|++++|||||++++++.+  ..|+|
T Consensus         4 ~dy~-i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv   82 (316)
T d1fota_           4 QDFQ-ILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI   82 (316)
T ss_dssp             GGEE-EEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred             hHeE-EEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeE
Confidence            3453 346778999999999998  58999999986     23445789999999999999999999999976  78999


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      ||||+||+|..++          .....+++..+..|+.||+.||.|||+   ++||||||||+||||+.+|.+||+|||
T Consensus        83 mE~~~gg~l~~~~----------~~~~~~~~~~~~~~~~qi~~al~~lH~---~~iiHrDiKp~NILl~~~g~vkL~DFG  149 (316)
T d1fota_          83 MDYIEGGELFSLL----------RKSQRFPNPVAKFYAAEVCLALEYLHS---KDIIYRDLKPENILLDKNGHIKITDFG  149 (316)
T ss_dssp             ECCCCSCBHHHHH----------HHTSSCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECTTSCEEECCCS
T ss_pred             eeecCCccccccc----------cccccccccHHHHHHHHHHHhhhhhcc---CcEEccccCchheeEcCCCCEEEecCc
Confidence            9999999999998          455678999999999999999999999   779999999999999999999999999


Q ss_pred             Cccc----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChh
Q 005680          487 LNIC----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLD  544 (683)
Q Consensus       487 la~~----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~  544 (683)
                      +|+.                      ..|+.++|||||||++|+|+||++||.....     ...+..++.. ...+|..
T Consensus       150 ~a~~~~~~~~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~-----~~~~~~i~~~-~~~~p~~  223 (316)
T d1fota_         150 FAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNT-----MKTYEKILNA-ELRFPPF  223 (316)
T ss_dssp             SCEECSSCBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHHHHHC-CCCCCTT
T ss_pred             cceEeccccccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcCH-----HHHHHHHHcC-CCCCCCC
Confidence            9854                      3588999999999999999999999965322     2223333333 3456778


Q ss_pred             hHHHHHHHHHHhhhcCCCccccc-----cHHHHHH
Q 005680          545 LAEELAGIALKCLSADQDANRDL-----RIAGVMK  574 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~RP-----s~~eVl~  574 (683)
                      +++++.+++.+||..|  |.+|+     |+.++++
T Consensus       224 ~s~~~~~li~~~L~~d--p~~R~~~~r~t~~~il~  256 (316)
T d1fota_         224 FNEDVKDLLSRLITRD--LSQRLGNLQNGTEDVKN  256 (316)
T ss_dssp             SCHHHHHHHHHHTCSC--TTTCTTSSTTTTHHHHT
T ss_pred             CCHHHHHHHHHHhhhC--HHhccccchhhHHHHHc
Confidence            8999999999999999  66775     7888765

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.4e-42  Score=357.68  Aligned_cols=230  Identities=21%  Similarity=0.336  Sum_probs=185.7

Q ss_pred             ccccccCCceEEEEEEEC---------CeeEEEEEcCCCCC---HHHHHHHHHHHHhc-CCCCccceeccccc--ceeEE
Q 005680          342 FRLKCAGDWTNVYRGRLN---------HASVAIKTLNNGLS---EEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~~---------g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV  406 (683)
                      .+.+|+|+||.||+|+..         +..||||+++....   ...+.+|+..+.++ +|||||+++|+|.+  ..++|
T Consensus        18 ~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~~~~~~v   97 (299)
T d1fgka_          18 GKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVI   97 (299)
T ss_dssp             EEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEE
T ss_pred             eeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccCCeEEEE
Confidence            467799999999999862         24799999985443   35688899999998 89999999999976  78999


Q ss_pred             EeecCCCCchhhhhhccccc------ccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcE
Q 005680          407 FEYMPNGNLRDKLFTSQRNY------KNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVA  480 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~------~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~  480 (683)
                      ||||++|+|.++|.......      ........+++..++.++.||+.||.|||+   .+||||||||+|||++.++.+
T Consensus        98 ~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~---~~ivHrDiKp~NiLl~~~~~~  174 (299)
T d1fgka_          98 VEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVM  174 (299)
T ss_dssp             ECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCE
T ss_pred             EEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhh---CCEEeeeecccceeecCCCCe
Confidence            99999999999996442110      001234569999999999999999999999   679999999999999999999


Q ss_pred             EEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHH
Q 005680          481 KISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQ  532 (683)
Q Consensus       481 KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~  532 (683)
                      ||+|||+++.                           ..|+.++|||||||++|||+| |.+||.....     ......
T Consensus       175 kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~-----~~~~~~  249 (299)
T d1fgka_         175 KIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPV-----EELFKL  249 (299)
T ss_dssp             EECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH-----HHHHHH
T ss_pred             EeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCCH-----HHHHHH
Confidence            9999999853                           468899999999999999998 7888864322     223334


Q ss_pred             HhcCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHH
Q 005680          533 VLDGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRK  581 (683)
Q Consensus       533 ild~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~  581 (683)
                      +..+..+..|..+++.+.+||.+||+.|  |..|||+.+|++.|++|..
T Consensus       250 i~~~~~~~~p~~~~~~l~~li~~cl~~d--P~~Rps~~eil~~L~~i~a  296 (299)
T d1fgka_         250 LKEGHRMDKPSNCTNELYMMMRDCWHAV--PSQRPTFKQLVEDLDRIVA  296 (299)
T ss_dssp             HHTTCCCCCCSSCCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHH
T ss_pred             HHcCCCCCCCccchHHHHHHHHHHccCC--HhHCcCHHHHHHHHHHHhh
Confidence            4556667778889999999999999999  8899999999999999864

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-41  Score=360.96  Aligned_cols=215  Identities=18%  Similarity=0.252  Sum_probs=178.9

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcCCCC-CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCCCc
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNGNL  415 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~ggsL  415 (683)
                      ..+.+|+|+||+||+|..  +|+.||||+++... ....+.+|+.+|+.++|||||++++++.+  ..|||||||+||+|
T Consensus         9 i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~~~gg~L   88 (321)
T d1tkia_           9 IAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFISGLDI   88 (321)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCCCCCBH
T ss_pred             EEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEecCCCCcH
Confidence            346779999999999998  68999999998433 34568899999999999999999999965  78999999999999


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCC--CcEEEecCCCccc---
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRN--LVAKISGLGLNIC---  490 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~--~~~KL~DFGla~~---  490 (683)
                      .++|.         .....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.+  +.+||+|||+++.   
T Consensus        89 ~~~i~---------~~~~~l~e~~~~~i~~qi~~al~yLH~---~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~  156 (321)
T d1tkia_          89 FERIN---------TSAFELNEREIVSYVHQVCEALQFLHS---HNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKP  156 (321)
T ss_dssp             HHHHT---------SSSCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCT
T ss_pred             HHHHH---------hcCCCCCHHHHHHHHHHHHHHHHHHHH---cCCCcccccccceeecCCCceEEEEcccchhhcccc
Confidence            99994         223469999999999999999999999   779999999999999854  5899999999853   


Q ss_pred             ---------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCCh----hh
Q 005680          491 ---------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPL----DL  545 (683)
Q Consensus       491 ---------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~----~~  545 (683)
                                           ..|+.++|||||||++|+|++|.+||.....     ...+..+.... ..++.    .+
T Consensus       157 ~~~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~-----~~~~~~i~~~~-~~~~~~~~~~~  230 (321)
T d1tkia_         157 GDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN-----QQIIENIMNAE-YTFDEEAFKEI  230 (321)
T ss_dssp             TCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHHHHHTC-CCCCHHHHTTS
T ss_pred             CCcccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCH-----HHHHHHHHhCC-CCCChhhccCC
Confidence                                 3478899999999999999999999965322     22333344332 22232    46


Q ss_pred             HHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          546 AEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       546 ~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ++++.+|+.+||..|  |.+|||+.++++.
T Consensus       231 s~~~~~li~~~L~~d--p~~R~s~~eil~h  258 (321)
T d1tkia_         231 SIEAMDFVDRLLVKE--RKSRMTASEALQH  258 (321)
T ss_dssp             CHHHHHHHHTTSCSS--GGGSCCHHHHHHS
T ss_pred             CHHHHHHHHHHccCC--hhHCcCHHHHhcC
Confidence            788999999999999  8899999999864

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=7.4e-42  Score=354.18  Aligned_cols=221  Identities=24%  Similarity=0.350  Sum_probs=184.0

Q ss_pred             ccccccccCCceEEEEEEE--CCeeEEEEEcCCCC--C---HHHHHHHHHHHHhcCCCCccceeccccc------ceeEE
Q 005680          340 ERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL--S---EEDFQAKVSFLTAVRHPHLVAVMGCCSE------LKCIV  406 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~--~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~------~~~LV  406 (683)
                      ...+.+|+|+||.||+|.+  +|+.||||+++...  .   ...|.+|+.+|+.++|||||++++++.+      ..|||
T Consensus        10 ~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~~~lv   89 (277)
T d1o6ya_          10 ELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIV   89 (277)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred             EEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCceEEEE
Confidence            3456789999999999998  69999999997322  1   2468999999999999999999999854      37899


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      ||||+||+|.+++          .....+++..++.|+.||+.||.|||+   .+||||||||+||||+.++..+|+|||
T Consensus        90 mE~~~g~~L~~~~----------~~~~~l~~~~~~~i~~qi~~al~~lH~---~~iiHrDiKP~NIll~~~~~~~l~d~~  156 (277)
T d1o6ya_          90 MEYVDGVTLRDIV----------HTEGPMTPKRAIEVIADACQALNFSHQ---NGIIHRDVKPANIMISATNAVKVMDFG  156 (277)
T ss_dssp             EECCCEEEHHHHH----------HHHCSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTSCEEECCCT
T ss_pred             EECCCCCEehhhh----------cccCCCCHHHHHHHHHHHHHHHHHHHh---CCccCccccCcccccCccccceeehhh
Confidence            9999999999988          345679999999999999999999999   679999999999999999999999999


Q ss_pred             Cccc----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCC
Q 005680          487 LNIC----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNA  538 (683)
Q Consensus       487 la~~----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~  538 (683)
                      ++..                            ..+++++|||||||++|+|+||++||.....     ...+..++....
T Consensus       157 ~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~-----~~~~~~~~~~~~  231 (277)
T d1o6ya_         157 IARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSP-----VSVAYQHVREDP  231 (277)
T ss_dssp             TCEECC----------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH-----HHHHHHHHHCCC
T ss_pred             hhhhhccccccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcCH-----HHHHHHHHhcCC
Confidence            8642                            3578999999999999999999999964322     122222332211


Q ss_pred             ---CCCChhhHHHHHHHHHHhhhcCCCccccc-cHHHHHHHHHHHH
Q 005680          539 ---GIWPLDLAEELAGIALKCLSADQDANRDL-RIAGVMKELDEVR  580 (683)
Q Consensus       539 ---~~~p~~~~~~l~~Li~~CL~~dP~p~~RP-s~~eVl~~L~~l~  580 (683)
                         ...+..+++.+.+||.+||+.|  |.+|| |+.+++..|.+++
T Consensus       232 ~~~~~~~~~~s~~l~~li~~~L~~d--p~~R~~sa~~l~~~l~r~~  275 (277)
T d1o6ya_         232 IPPSARHEGLSADLDAVVLKALAKN--PENRYQTAAEMRADLVRVH  275 (277)
T ss_dssp             CCGGGTSSSCCHHHHHHHHHHTCSS--GGGSCSSHHHHHHHHHHHH
T ss_pred             CCCchhccCCCHHHHHHHHHHccCC--HhHCHhHHHHHHHHHHHHh
Confidence               1223467899999999999999  88999 8999999998875

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9e-42  Score=367.85  Aligned_cols=220  Identities=25%  Similarity=0.307  Sum_probs=179.0

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCC-----CCCHHHHHHH---HHHHHhcCCCCccceeccccc--ce
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN-----GLSEEDFQAK---VSFLTAVRHPHLVAVMGCCSE--LK  403 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~-----~~~~~~~~~E---v~iL~~l~HpnIV~l~g~~~~--~~  403 (683)
                      ++|.. .+++|+|+||.||+|..  +|+.||||++..     ......+.+|   +.+++.++|||||+++++|.+  ..
T Consensus         4 ddy~i-~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~   82 (364)
T d1omwa3           4 NDFSV-HRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL   82 (364)
T ss_dssp             TTEEE-EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred             HhCee-eeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEE
Confidence            45644 46789999999999998  689999999862     2223344444   666777789999999999966  78


Q ss_pred             eEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEe
Q 005680          404 CIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKIS  483 (683)
Q Consensus       404 ~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~  483 (683)
                      |||||||+||+|.++|.          ....+++..+..|+.||+.||.|||+   ++||||||||+||||+.+|.+||+
T Consensus        83 ~ivmE~~~gg~L~~~l~----------~~~~~~e~~~~~~~~qi~~aL~ylH~---~~iiHrDlKP~NILl~~~g~iKl~  149 (364)
T d1omwa3          83 SFILDLMNGGDLHYHLS----------QHGVFSEADMRFYAAEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRIS  149 (364)
T ss_dssp             EEEECCCCSCBHHHHHH----------HHCSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECSSSCEEEC
T ss_pred             EEEEEecCCCcHHHHHH----------hcccccHHHHHHHHHHHHHHHHHHHH---CCccceeeccceeEEcCCCcEEEe
Confidence            99999999999999993          45678999999999999999999999   779999999999999999999999


Q ss_pred             cCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCC
Q 005680          484 GLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG  539 (683)
Q Consensus       484 DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~  539 (683)
                      |||+|+.                        ..|+.++|||||||++|+|+||++||.....   .....+.........
T Consensus       150 DFGla~~~~~~~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~---~~~~~~~~~~~~~~~  226 (364)
T d1omwa3         150 DLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKT---KDKHEIDRMTLTMAV  226 (364)
T ss_dssp             CCTTCEECSSSCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCS---SCHHHHHHHSSSCCC
T ss_pred             eeceeeecCCCcccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCH---HHHHHHHHhcccCCC
Confidence            9999853                        2478999999999999999999999964221   111222233333455


Q ss_pred             CCChhhHHHHHHHHHHhhhcCCCcccccc-----HHHHHH
Q 005680          540 IWPLDLAEELAGIALKCLSADQDANRDLR-----IAGVMK  574 (683)
Q Consensus       540 ~~p~~~~~~l~~Li~~CL~~dP~p~~RPs-----~~eVl~  574 (683)
                      .+|..+++++.+||.+||+.|  |.+|||     +.++++
T Consensus       227 ~~~~~~s~~~~~li~~~L~~d--P~~R~t~~~~~a~eil~  264 (364)
T d1omwa3         227 ELPDSFSPELRSLLEGLLQRD--VNRRLGCLGRGAQEVKE  264 (364)
T ss_dssp             CCCSSSCHHHHHHHHHHTCSS--TTTSTTTSSSTHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHcccC--HHHhCCCcccCHHHHHc
Confidence            667788999999999999999  889999     456553

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-41  Score=363.51  Aligned_cols=217  Identities=18%  Similarity=0.253  Sum_probs=182.5

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcC-----CCCCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN-----NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~-----~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV  406 (683)
                      ++|.. .+.+|+|+||.||+|.+  +|+.||||++.     .....+.+.+|+.+|+.++|||||++++++.+  ..++|
T Consensus        41 d~y~i-~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v  119 (350)
T d1rdqe_          41 DQFDR-IKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV  119 (350)
T ss_dssp             GGEEE-EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cCeEE-EEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeecccccccccccccc
Confidence            35543 46788999999999998  68999999986     23445678999999999999999999999966  77899


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      |||+.||+|.+++.          ....+++..+..|+.||+.||.|||+   .+||||||||+||||+.+|.+||+|||
T Consensus       120 ~e~~~~g~l~~~l~----------~~~~l~e~~~~~i~~qi~~aL~yLH~---~~iiHRDIKP~NILl~~~g~ikL~DFG  186 (350)
T d1rdqe_         120 MEYVAGGEMFSHLR----------RIGRFSEPHARFYAAQIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDFG  186 (350)
T ss_dssp             EECCTTCBHHHHHH----------HHCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCT
T ss_pred             cccccccchhhhHh----------hcCCCCHHHHHHHHHHHHHHHHHHHh---CCEecCcCCHHHcccCCCCCEEeeece
Confidence            99999999999994          44579999999999999999999999   679999999999999999999999999


Q ss_pred             Cccc----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCCChh
Q 005680          487 LNIC----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIWPLD  544 (683)
Q Consensus       487 la~~----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~p~~  544 (683)
                      +|+.                      ..++.++|||||||++|+|+||++||.....     ...+..+.. .....|..
T Consensus       187 ~a~~~~~~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~-----~~~~~~i~~-~~~~~p~~  260 (350)
T d1rdqe_         187 FAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQP-----IQIYEKIVS-GKVRFPSH  260 (350)
T ss_dssp             TCEECSSCBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHH-CCCCCCTT
T ss_pred             eeeecccccccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcCH-----HHHHHHHhc-CCCCCCcc
Confidence            9854                      3588999999999999999999999965322     122223333 33455678


Q ss_pred             hHHHHHHHHHHhhhcCCCcccc-----ccHHHHHH
Q 005680          545 LAEELAGIALKCLSADQDANRD-----LRIAGVMK  574 (683)
Q Consensus       545 ~~~~l~~Li~~CL~~dP~p~~R-----Ps~~eVl~  574 (683)
                      +++++.+||.+||+.|  |.+|     ||+.++++
T Consensus       261 ~s~~~~~li~~~L~~d--P~kR~~~~r~t~~ell~  293 (350)
T d1rdqe_         261 FSSDLKDLLRNLLQVD--LTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             CCHHHHHHHHHHSCSC--TTTCTTSSTTTTHHHHT
T ss_pred             CCHHHHHHHHHHhhhC--HHhccccccccHHHHHc
Confidence            8999999999999999  5566     58888765

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-41  Score=355.98  Aligned_cols=226  Identities=22%  Similarity=0.306  Sum_probs=176.5

Q ss_pred             cccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHH--HHHHHHhcCCCCccceeccccc------ceeEEEeecCCCC
Q 005680          343 RLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQA--KVSFLTAVRHPHLVAVMGCCSE------LKCIVFEYMPNGN  414 (683)
Q Consensus       343 ~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~--Ev~iL~~l~HpnIV~l~g~~~~------~~~LV~Ey~~ggs  414 (683)
                      +.+|+|+||.||+|+++|..||||+++.. ....+.+  |+..+..++|||||+++|+|.+      ..|||||||++|+
T Consensus         9 ~~iG~G~fg~Vy~~~~~g~~vAvK~~~~~-~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~Ey~~~g~   87 (303)
T d1vjya_           9 ESIGKGRFGEVWRGKWRGEEVAVKIFSSR-EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGS   87 (303)
T ss_dssp             EEEECCSSSEEEEEEETTEEEEEEEECGG-GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCB
T ss_pred             EEEeeCCCeEEEEEEECCEEEEEEEECcc-chhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEEecccCCC
Confidence            45789999999999999999999999743 2334444  4555567899999999999954      4689999999999


Q ss_pred             chhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCC-----CCcEEeccCCCCcccccCCCcEEEecCCCcc
Q 005680          415 LRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTE-----PRPIVHGSLTPSSILLDRNLVAKISGLGLNI  489 (683)
Q Consensus       415 L~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~-----~~~IiHrDLKP~NILld~~~~~KL~DFGla~  489 (683)
                      |.++|.           ...++|..++.++.|++.||.|||+..     .++||||||||+||||+.++.+||+|||+++
T Consensus        88 L~~~l~-----------~~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~  156 (303)
T d1vjya_          88 LFDYLN-----------RYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV  156 (303)
T ss_dssp             HHHHHH-----------HCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             HHHHHh-----------cCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCccc
Confidence            999994           235999999999999999999999741     1589999999999999999999999999875


Q ss_pred             c----------------------------c-------CCCcccccccHHHHHHHHhhCCCCchhhHHH------h---hh
Q 005680          490 C----------------------------D-------QLNVRSDIRAFGTLLLHLLTGRNWAGLVEKA------M---AL  525 (683)
Q Consensus       490 ~----------------------------~-------~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~------~---~~  525 (683)
                      .                            +       .++.++|||||||+||||+||.+||+.....      .   ..
T Consensus       157 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~  236 (303)
T d1vjya_         157 RHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDP  236 (303)
T ss_dssp             EEETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSC
T ss_pred             cccCCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccc
Confidence            3                            0       1466899999999999999999887532110      0   00


Q ss_pred             hHHHHH-HHhcC-CCCCCCh-----hhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHh
Q 005680          526 DQTTLM-QVLDG-NAGIWPL-----DLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKK  582 (683)
Q Consensus       526 ~~~~~~-~ild~-~~~~~p~-----~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~  582 (683)
                      ....+. ..... ..+..|.     ..+..+.+|+.+||+.|  |.+|||+.+|++.|+.+.+.
T Consensus       237 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~li~~cl~~d--p~~Rps~~ei~~~L~~i~~~  298 (303)
T d1vjya_         237 SVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYAN--GAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             CHHHHHHHHTTSCCCCCCCGGGGGCHHHHHHHHHHHTTCCSS--GGGSCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhccccCCCCCcccCChHHHHHHHHHHHHHcccC--HhHCcCHHHHHHHHHHHHHh
Confidence            111111 22222 2233322     35567999999999999  88999999999999998753

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-41  Score=355.17  Aligned_cols=217  Identities=21%  Similarity=0.285  Sum_probs=172.8

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcCCCC-------CHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEee
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-------SEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEY  409 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-------~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey  409 (683)
                      ..+++|+|+||+||+|.+  +|+.||||+++...       ....+.+|+.+|++++|||||++++++.+  ..||||||
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~   81 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDF   81 (299)
T ss_dssp             EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEEC
T ss_pred             cceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhh
Confidence            457899999999999998  68999999987221       12468899999999999999999999976  78999999


Q ss_pred             cCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCcc
Q 005680          410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNI  489 (683)
Q Consensus       410 ~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~  489 (683)
                      +.++++..++          .....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++.+||+|||+|+
T Consensus        82 ~~~~~~~~~~----------~~~~~l~~~~~~~~~~qil~aL~~lH~---~~iiHrDiKp~NIli~~~~~~KL~DFG~a~  148 (299)
T d1ua2a_          82 METDLEVIIK----------DNSLVLTPSHIKAYMLMTLQGLEYLHQ---HWILHRDLKPNNLLLDENGVLKLADFGLAK  148 (299)
T ss_dssp             CSEEHHHHHT----------TCCSSCCSSHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECCCGGGS
T ss_pred             hcchHHhhhh----------hcccCCCHHHHHHHHHHHHHHHHHhhc---cceecccCCcceEEecCCCccccccCcccc
Confidence            9988777666          355678999999999999999999999   779999999999999999999999999984


Q ss_pred             c--------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhc-CC-----
Q 005680          490 C--------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLD-GN-----  537 (683)
Q Consensus       490 ~--------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild-~~-----  537 (683)
                      .                          ..|+.++|||||||++|||+||.+||.........  ..+...+. +.     
T Consensus       149 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~l--~~i~~~~~~~~~~~~~  226 (299)
T d1ua2a_         149 SFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQL--TRIFETLGTPTEEQWP  226 (299)
T ss_dssp             TTTSCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH--HHHHHHHCCCCTTTSS
T ss_pred             ccCCCcccccceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCHHHHH--HHHHHhcCCCChhhcc
Confidence            3                          24688999999999999999999999643221100  00111110 00     


Q ss_pred             -------------CCCCC-----hhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          538 -------------AGIWP-----LDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       538 -------------~~~~p-----~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                                   .+..+     ..+++++.+|+.+||+.|  |..|||+.|+++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~d--P~~R~sa~e~L~  279 (299)
T d1ua2a_         227 DMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFN--PCARITATQALK  279 (299)
T ss_dssp             STTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSS--TTTSCCHHHHHT
T ss_pred             chhccchhhhhccCCCCChHHhcccCCHHHHHHHHHHccCC--hhhCcCHHHHhC
Confidence                         00111     245688999999999999  889999999864

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-41  Score=357.85  Aligned_cols=216  Identities=24%  Similarity=0.333  Sum_probs=180.6

Q ss_pred             CccccccccccCCceEEEEEEE--CCeeEEEEEcC-----CCCCHHHHHHHHHHHH-hcCCCCccceeccccc--ceeEE
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN-----NGLSEEDFQAKVSFLT-AVRHPHLVAVMGCCSE--LKCIV  406 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~-----~~~~~~~~~~Ev~iL~-~l~HpnIV~l~g~~~~--~~~LV  406 (683)
                      +|. ..+.+|+|+||+||+|..  +|+.||||+++     .......+..|+.++. .++|||||++++++.+  ..|||
T Consensus         3 dy~-i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yiv   81 (320)
T d1xjda_           3 DFI-LHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFV   81 (320)
T ss_dssp             TEE-EEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred             CeE-EeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEE
Confidence            443 346778999999999998  78999999996     2334566778887766 6899999999999976  78999


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      ||||+||+|.+++.          ....+++..+..|+.||+.||.|||+   ++|+||||||+|||++.++.+||+|||
T Consensus        82 mEy~~~g~L~~~i~----------~~~~~~e~~~~~~~~qi~~al~ylH~---~~iiHrDikp~NiL~~~~~~~kl~DFG  148 (320)
T d1xjda_          82 MEYLNGGDLMYHIQ----------SCHKFDLSRATFYAAEIILGLQFLHS---KGIVYRDLKLDNILLDKDGHIKIADFG  148 (320)
T ss_dssp             EECCTTCBHHHHHH----------HHSSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCT
T ss_pred             EeecCCCcHHHHhh----------ccCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCcccceeecCCCceeccccc
Confidence            99999999999994          44678999999999999999999999   679999999999999999999999999


Q ss_pred             Cccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCCCC
Q 005680          487 LNIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAGIW  541 (683)
Q Consensus       487 la~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~~~  541 (683)
                      +|+.                         ..|+.++|||||||++|+|+||+.||.....     ...+..+. ...+.+
T Consensus       149 ~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~-----~~~~~~i~-~~~~~~  222 (320)
T d1xjda_         149 MCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDE-----EELFHSIR-MDNPFY  222 (320)
T ss_dssp             TCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHH-HCCCCC
T ss_pred             hhhhcccccccccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCH-----HHHHHHHH-cCCCCC
Confidence            9853                         3688999999999999999999999965322     11222222 234566


Q ss_pred             ChhhHHHHHHHHHHhhhcCCCccccccHH-HHHH
Q 005680          542 PLDLAEELAGIALKCLSADQDANRDLRIA-GVMK  574 (683)
Q Consensus       542 p~~~~~~l~~Li~~CL~~dP~p~~RPs~~-eVl~  574 (683)
                      |..+++++.+||.+||..|  |..|||+. ++++
T Consensus       223 p~~~s~~~~dli~~~L~~d--P~~R~s~~~~l~~  254 (320)
T d1xjda_         223 PRWLEKEAKDLLVKLFVRE--PEKRLGVRGDIRQ  254 (320)
T ss_dssp             CTTSCHHHHHHHHHHSCSS--GGGSBTTBSCGGG
T ss_pred             CccCCHHHHHHHHHhcccC--CCCCcCHHHHHHh
Confidence            7788999999999999999  88999985 6643

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-41  Score=360.52  Aligned_cols=223  Identities=17%  Similarity=0.256  Sum_probs=177.9

Q ss_pred             hcCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCCccceeccccc------ceeE
Q 005680          335 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAV-RHPHLVAVMGCCSE------LKCI  405 (683)
Q Consensus       335 t~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~------~~~L  405 (683)
                      .++|....+++|+|+||.||+|.+  +|+.||||+++.   ...+.+|+.++.++ +|||||+++++|.+      ..||
T Consensus        10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~---~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~i   86 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD---CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLI   86 (335)
T ss_dssp             GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEC---SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEE
T ss_pred             ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECC---cHHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEEE
Confidence            467766667889999999999998  689999999963   35688999987665 89999999999843      5799


Q ss_pred             EEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC---CCcEEE
Q 005680          406 VFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR---NLVAKI  482 (683)
Q Consensus       406 V~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~---~~~~KL  482 (683)
                      |||||+||+|.++|...        ....+++..+..|+.||+.||.|||+   .+|+||||||+|||++.   ++.+||
T Consensus        87 vmEy~~gg~L~~~i~~~--------~~~~l~e~~~~~i~~qi~~al~ylH~---~~iiHRDiKp~NIll~~~~~~~~~Kl  155 (335)
T d2ozaa1          87 VMECLDGGELFSRIQDR--------GDQAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKL  155 (335)
T ss_dssp             EEECCCSEEHHHHHHSC--------SCCCEEHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCSSTTCCEEE
T ss_pred             EEECCCCCcHHHHHHhc--------CCCCcCHHHHHHHHHHHHHHHHHHHH---cCCccccccccccccccccccccccc
Confidence            99999999999999532        23579999999999999999999999   77999999999999975   567999


Q ss_pred             ecCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCC
Q 005680          483 SGLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNA  538 (683)
Q Consensus       483 ~DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~  538 (683)
                      +|||+|+.                        ..|+.++|||||||++|+|+||++||....... . ...+...+....
T Consensus       156 ~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~-~-~~~~~~~i~~~~  233 (335)
T d2ozaa1         156 TDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLA-I-SPGMKTRIRMGQ  233 (335)
T ss_dssp             CCCTTCEECCCCCCCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC----------CCCSCS
T ss_pred             cccceeeeccCCCccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHH-H-HHHHHHHHhcCC
Confidence            99999853                        357899999999999999999999996432110 0 011111111112


Q ss_pred             CCCC----hhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          539 GIWP----LDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       539 ~~~p----~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ..+|    ..+++++.+||.+||+.|  |..|||+.+++..
T Consensus       234 ~~~~~~~~~~~s~~~~~li~~~L~~d--P~~R~s~~eil~h  272 (335)
T d2ozaa1         234 YEFPNPEWSEVSEEVKMLIRNLLKTE--PTQRMTITEFMNH  272 (335)
T ss_dssp             SSCCTTHHHHSCHHHHHHHHHHSCSS--TTTSCCHHHHHHS
T ss_pred             CCCCCcccccCCHHHHHHHHHHccCC--hhHCcCHHHHHcC
Confidence            2222    357789999999999999  8899999998764

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-41  Score=353.17  Aligned_cols=230  Identities=21%  Similarity=0.329  Sum_probs=186.2

Q ss_pred             ccccccCCceEEEEEEE-------CCeeEEEEEcCCCCC---HHHHHHHHHHHHhc-CCCCccceeccccc--ceeEEEe
Q 005680          342 FRLKCAGDWTNVYRGRL-------NHASVAIKTLNNGLS---EEDFQAKVSFLTAV-RHPHLVAVMGCCSE--LKCIVFE  408 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~-------~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l-~HpnIV~l~g~~~~--~~~LV~E  408 (683)
                      .+.+|+|+||.||+|++       +++.||||+++....   ...|.+|+.+++++ +|||||+++|+|.+  ..+||||
T Consensus        28 ~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~~~~lvmE  107 (311)
T d1t46a_          28 GKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITE  107 (311)
T ss_dssp             EEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             eeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCCEEEEEEE
Confidence            45789999999999986       346899999974433   34688999999999 69999999999976  7899999


Q ss_pred             ecCCCCchhhhhhcccccc--------cccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcE
Q 005680          409 YMPNGNLRDKLFTSQRNYK--------NCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVA  480 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~--------~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~  480 (683)
                      ||++|+|.++|........        .......+++..+..|+.||+.||.|||+   ++||||||||+|||++.++.+
T Consensus       108 ~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~---~~ivHrDLKp~NIl~~~~~~~  184 (311)
T d1t46a_         108 YCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS---KNCIHRDLAARNILLTHGRIT  184 (311)
T ss_dssp             CCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEETTTEE
T ss_pred             cCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHh---CCeeecccccccccccccCcc
Confidence            9999999999965421100        00133469999999999999999999999   779999999999999999999


Q ss_pred             EEecCCCccc---------------------------cCCCcccccccHHHHHHHHhh-CCCCchhhHHHhhhhHHHHHH
Q 005680          481 KISGLGLNIC---------------------------DQLNVRSDIRAFGTLLLHLLT-GRNWAGLVEKAMALDQTTLMQ  532 (683)
Q Consensus       481 KL~DFGla~~---------------------------~~~t~ksDVwSlGviL~eLlt-G~~Pf~~~~~~~~~~~~~~~~  532 (683)
                      ||+|||+++.                           ..++.++|||||||++|||+| |.+||.....     ...+..
T Consensus       185 ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~~-----~~~~~~  259 (311)
T d1t46a_         185 KICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPV-----DSKFYK  259 (311)
T ss_dssp             EECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCS-----SHHHHH
T ss_pred             cccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCCCH-----HHHHHH
Confidence            9999999864                           357899999999999999999 6666643211     122223


Q ss_pred             Hh-cCCCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHH
Q 005680          533 VL-DGNAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRK  581 (683)
Q Consensus       533 il-d~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~  581 (683)
                      ++ .+.....|..++..+.+||.+||+.|  |.+|||+.+|++.|+++..
T Consensus       260 ~i~~~~~~~~~~~~~~~l~~Li~~cl~~d--P~~RPs~~~il~~L~~~i~  307 (311)
T d1t46a_         260 MIKEGFRMLSPEHAPAEMYDIMKTCWDAD--PLKRPTFKQIVQLIEKQIS  307 (311)
T ss_dssp             HHHHTCCCCCCTTSCHHHHHHHHHHTCSS--GGGSCCHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCCcccccHHHHHHHHHHcCCC--hhHCcCHHHHHHHHHHhhc
Confidence            33 34455666778899999999999999  8899999999999987654

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-40  Score=345.04  Aligned_cols=223  Identities=19%  Similarity=0.272  Sum_probs=172.9

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEE
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVF  407 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~  407 (683)
                      ++|.. .+.+|+|+||+||+|.+  +|+.||||+++..    .....+.+|+.+|++++|||||++++++.+  ..||||
T Consensus         2 d~Y~~-~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~   80 (298)
T d1gz8a_           2 ENFQK-VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVF   80 (298)
T ss_dssp             TTEEE-EEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             CCCEe-ccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEE
Confidence            45554 46778999999999998  5899999999722    234678999999999999999999999976  789999


Q ss_pred             eecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCC
Q 005680          408 EYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGL  487 (683)
Q Consensus       408 Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGl  487 (683)
                      ||+.++ +.+++..        .....+++..+..|+.||+.||.|||+   .+||||||||+|||++.++.+||+|||+
T Consensus        81 e~~~~~-~~~~~~~--------~~~~~l~e~~~~~~~~qil~~L~yLH~---~~IiHrDiKpeNIl~~~~~~~kl~DFG~  148 (298)
T d1gz8a_          81 EFLHQD-LKKFMDA--------SALTGIPLPLIKSYLFQLLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGL  148 (298)
T ss_dssp             ECCSEE-HHHHHHH--------TTTTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECSTTH
T ss_pred             eecCCc-hhhhhhh--------hcccCCCHHHHHHHHHHHHHHHHHhhc---CCEEccccCchheeecccCcceeccCCc
Confidence            999754 4444422        245679999999999999999999999   7799999999999999999999999999


Q ss_pred             ccc--------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC-----
Q 005680          488 NIC--------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG-----  536 (683)
Q Consensus       488 a~~--------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~-----  536 (683)
                      |+.                          ..++.++|||||||++|+|++|++||.......... ........+     
T Consensus       149 a~~~~~~~~~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~~~~-~i~~~~~~~~~~~~  227 (298)
T d1gz8a_         149 ARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLF-RIFRTLGTPDEVVW  227 (298)
T ss_dssp             HHHHCCCSBCTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHH-HHHHHHCCCCTTTS
T ss_pred             ceeccCCcccceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCCHHHHHH-HHHHhcCCCchhhc
Confidence            843                          235789999999999999999999996432210000 000000000     


Q ss_pred             --------CCCCC-----------ChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          537 --------NAGIW-----------PLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       537 --------~~~~~-----------p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                              ....+           ...+++++.+|+.+||+.|  |.+|||+.++++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~d--P~~R~t~~ell~  282 (298)
T d1gz8a_         228 PGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYD--PNKRISAKAALA  282 (298)
T ss_dssp             TTGGGSTTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSS--TTTSCCHHHHHT
T ss_pred             cccccccccccccccccccchhhhccCCCHHHHHHHHHHccCC--hhHCcCHHHHhC
Confidence                    00000           1135678999999999999  889999999875

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=3.5e-40  Score=342.65  Aligned_cols=221  Identities=18%  Similarity=0.238  Sum_probs=176.4

Q ss_pred             CccccccccccCCceEEEEEEE-CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEee
Q 005680          337 DFSERFRLKCAGDWTNVYRGRL-NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEY  409 (683)
Q Consensus       337 ~F~~~~~liG~G~fG~Vykg~~-~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey  409 (683)
                      +| ...+.+|+|+||+||+|.+ +|+.||||+++..    .....+.+|+.+|++++|||||+++++|.+  ..+++|||
T Consensus         3 ~Y-~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~   81 (286)
T d1ob3a_           3 KY-HGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (286)
T ss_dssp             SE-EEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             Cc-eeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEe
Confidence            44 3446678999999999998 6899999999732    224689999999999999999999999966  78999999


Q ss_pred             cCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCcc
Q 005680          410 MPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNI  489 (683)
Q Consensus       410 ~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~  489 (683)
                      +.++.+..+.          .....+++..+..|+.||+.||.|||+   .+||||||||+||||+.++.+||+|||+|.
T Consensus        82 ~~~~~~~~~~----------~~~~~l~~~~~~~i~~qi~~~L~~LH~---~~IvHrDiKp~NIll~~~~~~kl~DfG~a~  148 (286)
T d1ob3a_          82 LDQDLKKLLD----------VCEGGLESVTAKSFLLQLLNGIAYCHD---RRVLHRDLKPQNLLINREGELKIADFGLAR  148 (286)
T ss_dssp             CSEEHHHHHH----------TSTTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECCTTHHH
T ss_pred             ehhhhHHHHH----------hhcCCcchhhhHHHHHHHHHHHHHhcc---CcEEecCCCCceeeEcCCCCEEecccccce
Confidence            9887776666          455779999999999999999999999   679999999999999999999999999974


Q ss_pred             c--------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCC------
Q 005680          490 C--------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGN------  537 (683)
Q Consensus       490 ~--------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~------  537 (683)
                      .                          ..++.++|||||||++|||++|++||........... .......+.      
T Consensus       149 ~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~~~~~~-i~~~~~~~~~~~~~~  227 (286)
T d1ob3a_         149 AFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMR-IFRILGTPNSKNWPN  227 (286)
T ss_dssp             HHCC---------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHH-HHHHHCCCCTTTSTT
T ss_pred             ecccCccccceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCHHHHHHH-HHHhhCCCChhhccc
Confidence            3                          2468999999999999999999999964322110000 000000000      


Q ss_pred             ------------------CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          538 ------------------AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       538 ------------------~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                                        ....+..+++.+.+|+.+||+.|  |++|||+.|+++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~d--P~~R~s~~ell~  280 (286)
T d1ob3a_         228 VTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLD--PNQRITAKQALE  280 (286)
T ss_dssp             GGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSS--TTTSCCHHHHHT
T ss_pred             hhhhhhcccccccccCcchhhhcccCCHHHHHHHHHHccCC--hhHCcCHHHHhc
Confidence                              01123356789999999999999  889999999874

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-40  Score=342.73  Aligned_cols=208  Identities=16%  Similarity=0.192  Sum_probs=172.9

Q ss_pred             ccccccccCCceEEEEEEE--CCeeEEEEEcCCC--------CCHHHHHHHHHHHHhcC--CCCccceeccccc--ceeE
Q 005680          340 ERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNG--------LSEEDFQAKVSFLTAVR--HPHLVAVMGCCSE--LKCI  405 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~--------~~~~~~~~Ev~iL~~l~--HpnIV~l~g~~~~--~~~L  405 (683)
                      ...+++|+|+||.||+|..  +|+.||||++...        .....+.+|+.+|++++  |||||++++++.+  ..|+
T Consensus         7 ~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~~~l   86 (273)
T d1xwsa_           7 QVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVL   86 (273)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSEEEE
T ss_pred             EEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCeEEE
Confidence            3346789999999999998  6899999998621        11234678999999996  8999999999966  7899


Q ss_pred             EEeecCC-CCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC-CCcEEEe
Q 005680          406 VFEYMPN-GNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR-NLVAKIS  483 (683)
Q Consensus       406 V~Ey~~g-gsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~-~~~~KL~  483 (683)
                      ||||+.+ +++.+++          .....+++..+..|+.||+.||.|||+   ++|+||||||+|||++. ++.+||+
T Consensus        87 v~e~~~~~~~l~~~~----------~~~~~l~e~~~~~~~~qi~~al~~lH~---~~iiHrDiKp~NIll~~~~~~vkl~  153 (273)
T d1xwsa_          87 ILERPEPVQDLFDFI----------TERGALQEELARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLI  153 (273)
T ss_dssp             EEECCSSEEEHHHHH----------HHHCSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEETTTTEEEEC
T ss_pred             EEEeccCcchHHHHH----------hccCCCCHHHHHHHHHHHHHHHHHHHH---CCCccccCcccceEEecCCCeEEEC
Confidence            9999976 5777777          345679999999999999999999999   77999999999999985 4799999


Q ss_pred             cCCCccc-----------------------c-CCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcCCCC
Q 005680          484 GLGLNIC-----------------------D-QLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDGNAG  539 (683)
Q Consensus       484 DFGla~~-----------------------~-~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~~~~  539 (683)
                      |||+|+.                       . .++.++|||||||++|+|+||++||.....           +.. ...
T Consensus       154 DFG~a~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~-----------i~~-~~~  221 (273)
T d1xwsa_         154 DFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEE-----------IIR-GQV  221 (273)
T ss_dssp             CCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH-----------HHH-CCC
T ss_pred             ccccceecccccccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCchH-----------Hhh-ccc
Confidence            9999853                       1 246779999999999999999999975321           111 223


Q ss_pred             CCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          540 IWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       540 ~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .++..+++++.+||.+||+.|  |.+|||+.++++
T Consensus       222 ~~~~~~s~~~~~li~~~L~~d--p~~R~s~~eil~  254 (273)
T d1xwsa_         222 FFRQRVSSECQHLIRWCLALR--PSDRPTFEEIQN  254 (273)
T ss_dssp             CCSSCCCHHHHHHHHHHTCSS--GGGSCCHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHccCC--HhHCcCHHHHhc
Confidence            456678899999999999999  889999999864

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-39  Score=345.06  Aligned_cols=220  Identities=17%  Similarity=0.202  Sum_probs=169.6

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccccc--------ceeEEEeecC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--------LKCIVFEYMP  411 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--------~~~LV~Ey~~  411 (683)
                      .+++|+|+||+||+|++  +|+.||||++....  ..+.+|+.+|++++|||||+++++|..        ..|||||||+
T Consensus        25 ~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~--~~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~Ey~~  102 (350)
T d1q5ka_          25 TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK--RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVP  102 (350)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEECCS--SSCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEEEEECCS
T ss_pred             eeEEeeCcCeEEEEEEECCCCCEEEEEEECccc--hHHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEEEEeccC
Confidence            47889999999999998  68999999997432  234579999999999999999998832        4689999998


Q ss_pred             CCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCC-cEEEecCCCccc
Q 005680          412 NGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL-VAKISGLGLNIC  490 (683)
Q Consensus       412 ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~-~~KL~DFGla~~  490 (683)
                      +|.+..+....       .....+++..+..|+.||+.||.|||+   .+|+||||||+||||+.++ .+||+|||+++.
T Consensus       103 ~~~~~~l~~~~-------~~~~~l~~~~~~~i~~qil~aL~yLH~---~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~  172 (350)
T d1q5ka_         103 ETVYRVARHYS-------RAKQTLPVIYVKLYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ  172 (350)
T ss_dssp             EEHHHHHHHHH-------HTTCCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECTTTCCEEECCCTTCEE
T ss_pred             CccHHHHHhhh-------hccCCCCHHHHHHHHHHHHHHHHHHHh---cCCcccCCCcceEEEecCCCceeEecccchhh
Confidence            66444433222       345679999999999999999999999   6799999999999999775 899999999853


Q ss_pred             -------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh----------HHHHHHHhc
Q 005680          491 -------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD----------QTTLMQVLD  535 (683)
Q Consensus       491 -------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~----------~~~~~~ild  535 (683)
                                               ..++.++|||||||++|||++|++||..........          ...+.....
T Consensus       173 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~  252 (350)
T d1q5ka_         173 LVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNP  252 (350)
T ss_dssp             CCTTSCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCC
T ss_pred             ccCCcccccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCCHHHHHHHHHHHhCCChHHhhhhhcc
Confidence                                     257899999999999999999999996432210000          001111110


Q ss_pred             C----CC---------CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          536 G----NA---------GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       536 ~----~~---------~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      .    ..         .......++++.+|+.+||..|  |..|||+.|+++.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~d--P~~R~ta~e~L~H  303 (350)
T d1q5ka_         253 NYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYT--PTARLTPLEACAH  303 (350)
T ss_dssp             ---CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSS--GGGSCCHHHHHTS
T ss_pred             chhhccccccccCchhhhcccCCCHHHHHHHHHHccCC--hhHCcCHHHHhcC
Confidence            0    00         0112346788999999999999  8899999998753

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-38  Score=330.94  Aligned_cols=217  Identities=16%  Similarity=0.187  Sum_probs=174.3

Q ss_pred             ccccccCCceEEEEEEE--CCeeEEEEEcCCC----CCHHHHHHHHHHHHhcCCCCccceeccccc--ceeEEEeecCCC
Q 005680          342 FRLKCAGDWTNVYRGRL--NHASVAIKTLNNG----LSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--LKCIVFEYMPNG  413 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~----~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--~~~LV~Ey~~gg  413 (683)
                      .+.+|+|+||+||+|++  +|+.||||+++..    .....+.+|+.+|+.++|||||+++++|.+  ..++|++|+.++
T Consensus         7 i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~~~~~~   86 (292)
T d1unla_           7 LEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQD   86 (292)
T ss_dssp             EEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCSEE
T ss_pred             eeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEeeecccc
Confidence            45678999999999998  6899999998622    234688999999999999999999999976  778999999999


Q ss_pred             CchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCccc---
Q 005680          414 NLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNIC---  490 (683)
Q Consensus       414 sL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~---  490 (683)
                      +|..++          .....+++..+..++.|++.||.|||+   .+||||||||+|||++.++.+||+|||.|+.   
T Consensus        87 ~l~~~~----------~~~~~~~~~~~~~~~~q~~~aL~~lH~---~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~  153 (292)
T d1unla_          87 LKKYFD----------SCNGDLDPEIVKSFLFQLLKGLGFCHS---RNVLHRDLKPQNLLINRNGELKLANFGLARAFGI  153 (292)
T ss_dssp             HHHHHH----------HTTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECCS
T ss_pred             cccccc----------ccccccchhHHHHHHHHHHHHHHHhhc---CCEeeecccCcccccccCCceeeeecchhhcccC
Confidence            998887          355678999999999999999999999   6799999999999999999999999999853   


Q ss_pred             -----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHhcC-----------
Q 005680          491 -----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVLDG-----------  536 (683)
Q Consensus       491 -----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~ild~-----------  536 (683)
                                             ..++.++|||||||++|+|++|+.||.......... ..+......           
T Consensus       154 ~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  232 (292)
T d1unla_         154 PVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQL-KRIFRLLGTPTEEQWPSMTK  232 (292)
T ss_dssp             CCSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHH-HHHHHHHCCCCTTTCTTGGG
T ss_pred             CCccceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCCHHHHH-HHHHhhcCCCChhhhhhhhh
Confidence                                   236889999999999999999998863211100000 001111000           


Q ss_pred             --------------CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          537 --------------NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       537 --------------~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                                    .....+...++.+.+|+.+||+.|  |.+|||+.|+++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~d--P~~R~sa~e~L~  282 (292)
T d1unla_         233 LPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCN--PVQRISAEEALQ  282 (292)
T ss_dssp             STTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSS--GGGSCCHHHHTT
T ss_pred             cccccccccccccchhhhccccCCHHHHHHHHHHccCC--hhHCcCHHHHhc
Confidence                          111223456788999999999999  889999998864

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-39  Score=335.59  Aligned_cols=222  Identities=18%  Similarity=0.267  Sum_probs=172.1

Q ss_pred             cCccccccccccCCceEEEEEEE--C-CeeEEEEEcCC----CCCHHHHHHHHHHHHhc---CCCCccceeccccc----
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--N-HASVAIKTLNN----GLSEEDFQAKVSFLTAV---RHPHLVAVMGCCSE----  401 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~-g~~VAvK~l~~----~~~~~~~~~Ev~iL~~l---~HpnIV~l~g~~~~----  401 (683)
                      ++|. ..+.+|+|+||+||+|.+  + ++.||||+++.    ......+.+|+.+|+.+   +|||||+++++|..    
T Consensus         7 ~~Y~-i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~   85 (305)
T d1blxa_           7 QQYE-CVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD   85 (305)
T ss_dssp             GTEE-EEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECS
T ss_pred             CCEE-EEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccc
Confidence            4553 346678999999999997  3 67899999862    22234577888887766   79999999999842    


Q ss_pred             ---ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCC
Q 005680          402 ---LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL  478 (683)
Q Consensus       402 ---~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~  478 (683)
                         ..+++|||+.+|++.....         .....+++..+..|+.||+.||.|||+   .+||||||||+|||++.++
T Consensus        86 ~~~~~~~~~e~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~qi~~aL~yLH~---~~ivHrDiKp~NILi~~~~  153 (305)
T d1blxa_          86 RETKLTLVFEHVDQDLTTYLDK---------VPEPGVPTETIKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSG  153 (305)
T ss_dssp             SEEEEEEEEECCSCBHHHHHHH---------SCTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTC
T ss_pred             cCceEEEEEEeccCCchhhhhh---------ccCCCCCHHHHHHHHHHHHHHHHHHHh---CCEEecCCCccEEEEcCCC
Confidence               5789999999877654442         345679999999999999999999999   6799999999999999999


Q ss_pred             cEEEecCCCccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHHh
Q 005680          479 VAKISGLGLNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQVL  534 (683)
Q Consensus       479 ~~KL~DFGla~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~il  534 (683)
                      .+||+|||+++.                        ..|+.++|||||||++|||+||++||..........  .+...+
T Consensus       154 ~~kl~dfg~~~~~~~~~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~--~i~~~~  231 (305)
T d1blxa_         154 QIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLG--KILDVI  231 (305)
T ss_dssp             CEEECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHH--HHHHHH
T ss_pred             CeeecchhhhhhhcccccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCCCHHHHHH--HHHHhh
Confidence            999999999854                        458999999999999999999999996432211000  011110


Q ss_pred             c-C----------------------CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          535 D-G----------------------NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       535 d-~----------------------~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      . +                      ....++..+++.+.+|+.+||++|  |..|||+.|+++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~d--P~~R~sa~e~L~  292 (305)
T d1blxa_         232 GLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFN--PAKRISAYSALS  292 (305)
T ss_dssp             CCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSS--TTTSCCHHHHHT
T ss_pred             CCCchhcccccccchhhhhccccccchhhccccCCHHHHHHHHHHCcCC--hhHCcCHHHHhc
Confidence            0 0                      011223456789999999999999  889999999865

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-39  Score=342.40  Aligned_cols=221  Identities=19%  Similarity=0.274  Sum_probs=177.8

Q ss_pred             cCccccccccccCCceEEEEEEE-----CCeeEEEEEcCC------CCCHHHHHHHHHHHHhcCC-CCccceeccccc--
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL-----NHASVAIKTLNN------GLSEEDFQAKVSFLTAVRH-PHLVAVMGCCSE--  401 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~-----~g~~VAvK~l~~------~~~~~~~~~Ev~iL~~l~H-pnIV~l~g~~~~--  401 (683)
                      ++|.. .+.+|+|+||+||+|..     +|+.||||+++.      ....+.+.+|+.+|++++| |||+++++++.+  
T Consensus        24 ~~y~~-~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~  102 (322)
T d1vzoa_          24 ENFEL-LKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET  102 (322)
T ss_dssp             GGEEE-EEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred             hceEE-EEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCC
Confidence            44544 46778999999999986     478999999862      2235678899999999976 899999999966  


Q ss_pred             ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEE
Q 005680          402 LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAK  481 (683)
Q Consensus       402 ~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~K  481 (683)
                      ..++||||+.+|+|.+++.          ....++...+..++.||+.||.|||+   .+|+||||||+||||+.+|.+|
T Consensus       103 ~~~~v~e~~~~~~L~~~i~----------~~~~~~e~~~~~~~~Qi~~al~~lH~---~~ivHrDiKp~Nill~~~~~vk  169 (322)
T d1vzoa_         103 KLHLILDYINGGELFTHLS----------QRERFTEHEVQIYVGEIVLALEHLHK---LGIIYRDIKLENILLDSNGHVV  169 (322)
T ss_dssp             EEEEEECCCCSCBHHHHHH----------HHSCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEE
T ss_pred             ceeeeeecccccHHHHHHH----------hcccccHHHHHHHHHHHHHHHHHhhc---CCEEeccCCccceeecCCCCEE
Confidence            7899999999999999994          44567889999999999999999999   7799999999999999999999


Q ss_pred             EecCCCccc----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHHHHHH
Q 005680          482 ISGLGLNIC----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTTLMQV  533 (683)
Q Consensus       482 L~DFGla~~----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~~~~i  533 (683)
                      |+|||+|+.                            ..++.++|||||||+||+|+||++||......  .....+...
T Consensus       170 L~DFG~a~~~~~~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~--~~~~~i~~~  247 (322)
T d1vzoa_         170 LTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEK--NSQAEISRR  247 (322)
T ss_dssp             ESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSC--CCHHHHHHH
T ss_pred             EeeccchhhhcccccccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHHh
Confidence            999999853                            13678999999999999999999999653221  111111122


Q ss_pred             hcCCCCCCChhhHHHHHHHHHHhhhcCCCcccccc-----HHHHHH
Q 005680          534 LDGNAGIWPLDLAEELAGIALKCLSADQDANRDLR-----IAGVMK  574 (683)
Q Consensus       534 ld~~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs-----~~eVl~  574 (683)
                      ........|..+++++.+|+.+||++|  |.+|||     +.|+++
T Consensus       248 ~~~~~~~~~~~~s~~~~~li~~~l~~d--P~~R~s~~~~t~~eil~  291 (322)
T d1vzoa_         248 ILKSEPPYPQEMSALAKDLIQRLLMKD--PKKRLGCGPRDADEIKE  291 (322)
T ss_dssp             HHHCCCCCCTTSCHHHHHHHHHHTCSS--GGGSTTSSTTTHHHHHT
T ss_pred             cccCCCCCcccCCHHHHHHHHHHcccC--HHHcCCCCcccHHHHHc
Confidence            222344566788999999999999999  889995     566653

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-38  Score=330.68  Aligned_cols=221  Identities=14%  Similarity=0.197  Sum_probs=171.5

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcC----CCCCHHHHHHHHHHHHhcCCCCccceeccccc--------
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN----NGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE--------  401 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~----~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--------  401 (683)
                      ++|.. .+.+|+|+||+||+|.+  +|+.||||++.    .......+.+|+.+|++++||||+++++++..        
T Consensus        10 ~rY~i-~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~   88 (318)
T d3blha1          10 SKYEK-LAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   88 (318)
T ss_dssp             GGEEE-EEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC--------
T ss_pred             CCEEE-EEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccccc
Confidence            44533 45678999999999998  68999999986    22334678999999999999999999998733        


Q ss_pred             --ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCc
Q 005680          402 --LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLV  479 (683)
Q Consensus       402 --~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~  479 (683)
                        ..|+||||+.++.+....          .....++...+..|+.||+.||.|||+   .+|+||||||+||||+.++.
T Consensus        89 ~~~~~iv~e~~~~~~~~~~~----------~~~~~~~~~~~~~i~~qil~~l~~lH~---~~ivHrDlKp~NILl~~~~~  155 (318)
T d3blha1          89 KGSIYLVFDFCEHDLAGLLS----------NVLVKFTLSEIKRVMQMLLNGLYYIHR---NKILHRDMKAANVLITRDGV  155 (318)
T ss_dssp             --CEEEEEECCCEEHHHHHT----------CTTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSC
T ss_pred             CceEEEEEeccCCCccchhh----------hcccccccHHHHHHHHHHHHHHHHhcc---CCEEecCcCchheeecCCCc
Confidence              478999999887776555          355678999999999999999999999   77999999999999999999


Q ss_pred             EEEecCCCccc------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhHHH
Q 005680          480 AKISGLGLNIC------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQTT  529 (683)
Q Consensus       480 ~KL~DFGla~~------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~~~  529 (683)
                      +||+|||+++.                              ..++.++|||||||++|+|++|++||.........  ..
T Consensus       156 ~kl~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~~~~--~~  233 (318)
T d3blha1         156 LKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQL--AL  233 (318)
T ss_dssp             EEECCCTTCEECCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH--HH
T ss_pred             EEeeecceeeecccccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCCHHHHH--HH
Confidence            99999999842                              24789999999999999999999999642221000  11


Q ss_pred             HHHHhcCCC---------------------CCCC-------hhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          530 LMQVLDGNA---------------------GIWP-------LDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       530 ~~~ild~~~---------------------~~~p-------~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      +........                     ...+       ...++.+.+|+.+||+.|  |+.|||+.|+++
T Consensus       234 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~d--P~~R~sa~elL~  304 (318)
T d3blha1         234 ISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLD--PAQRIDSDDALN  304 (318)
T ss_dssp             HHHHHCCCCTTTSTTCCCC-------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSS--TTTSCCHHHHHH
T ss_pred             HHHhcCCCChhhccccchhhhhhhhcccccccccchhhhccccCCHHHHHHHHHHCcCC--hhHCcCHHHHHc
Confidence            111111000                     0000       012457789999999999  889999999874

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-38  Score=338.58  Aligned_cols=219  Identities=17%  Similarity=0.187  Sum_probs=168.2

Q ss_pred             ccccccccCCceEEEEEEE--CCeeEEEEEcCCCCC---HHHHHHHHHHHHhcCCCCccceeccccc------ceeEEEe
Q 005680          340 ERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLS---EEDFQAKVSFLTAVRHPHLVAVMGCCSE------LKCIVFE  408 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~------~~~LV~E  408 (683)
                      ...+.+|+|+||+||+|..  +|+.||||++.....   .+.+.+|+.+|++++|||||++++++..      ..+++++
T Consensus        11 ~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~~l~~   90 (345)
T d1pmea_          11 TNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYLVT   90 (345)
T ss_dssp             EEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEEE
T ss_pred             EEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceEEEEE
Confidence            3457789999999999998  689999999974332   3578899999999999999999999854      2355666


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCCCc
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLN  488 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla  488 (683)
                      |+.+|+|.+++.           ...+++..+..|+.||+.||.|||+   .+||||||||+||||+.++.+||+|||+|
T Consensus        91 ~~~~g~L~~~l~-----------~~~l~~~~i~~i~~qil~al~yLH~---~~iiHRDIKp~NILl~~~~~~kl~DfG~a  156 (345)
T d1pmea_          91 HLMGADLYKLLK-----------TQHLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLA  156 (345)
T ss_dssp             ECCCEEHHHHHH-----------HCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             eecCCchhhhhh-----------cCCCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCCCcceEEECCCCCEEEcccCce
Confidence            778999999993           2369999999999999999999999   67999999999999999999999999998


Q ss_pred             cc-----------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhH----------H-
Q 005680          489 IC-----------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQ----------T-  528 (683)
Q Consensus       489 ~~-----------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~----------~-  528 (683)
                      +.                             ..++.++||||+||++|+|++|++||...........          . 
T Consensus       157 ~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~~~~~~~~~~~~~~~~~~  236 (345)
T d1pmea_         157 RVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQED  236 (345)
T ss_dssp             EECCGGGCBCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHH
T ss_pred             eeccCCCccceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCCHHHHHHHHhhhccCCChhh
Confidence            53                             2467899999999999999999999954221000000          0 


Q ss_pred             -------HHHHHh--cCCCCCC-----ChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          529 -------TLMQVL--DGNAGIW-----PLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       529 -------~~~~il--d~~~~~~-----p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                             ......  .+.....     .+.++.++.+|+.+||+.|  |..|||+.++++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~d--P~~R~ta~e~L~  294 (345)
T d1pmea_         237 LNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFN--PHKRIEVEQALA  294 (345)
T ss_dssp             HHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSS--TTTSCCHHHHHT
T ss_pred             hhhhhhhhhhcccccCCccCCCCHHHhCCCCCHHHHHHHHHHccCC--hhHCcCHHHHhc
Confidence                   000000  0111111     1245678999999999999  789999999975

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-38  Score=336.60  Aligned_cols=222  Identities=18%  Similarity=0.252  Sum_probs=167.9

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC-C---HHHHHHHHHHHHhcCCCCccceeccccc--------
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-S---EEDFQAKVSFLTAVRHPHLVAVMGCCSE--------  401 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~~--------  401 (683)
                      +.|. ..+.+|+|+||+||+|.+  +|+.||||+++... .   .+.+.+|+.+|+.++|||||+++++|..        
T Consensus        18 ~~Y~-~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~   96 (346)
T d1cm8a_          18 AVYR-DLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT   96 (346)
T ss_dssp             SSEE-EEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             CcEE-EEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccc
Confidence            3443 346679999999999998  58999999997332 2   3568899999999999999999999854        


Q ss_pred             ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEE
Q 005680          402 LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAK  481 (683)
Q Consensus       402 ~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~K  481 (683)
                      ..||||||+ +++|..++           ....+++..+..|+.||+.||.|||+   .+||||||||+|||++.++.+|
T Consensus        97 ~~~lv~e~~-~~~l~~~~-----------~~~~l~~~~~~~~~~qi~~aL~~LH~---~~IiHrDiKp~NIL~~~~~~~k  161 (346)
T d1cm8a_          97 DFYLVMPFM-GTDLGKLM-----------KHEKLGEDRIQFLVYQMLKGLRYIHA---AGIIHRDLKPGNLAVNEDCELK  161 (346)
T ss_dssp             CCEEEEECC-SEEHHHHH-----------HHCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEE
T ss_pred             eEEEEEecc-cccHHHHH-----------HhccccHHHHHHHHHHHHHHHHHHHh---CCCcccccCcchhhcccccccc
Confidence            369999999 56777766           23469999999999999999999999   6799999999999999999999


Q ss_pred             EecCCCccc-----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh------------
Q 005680          482 ISGLGLNIC-----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD------------  526 (683)
Q Consensus       482 L~DFGla~~-----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~------------  526 (683)
                      |+|||+|+.                       ..++.++|||||||++|+|++|++||..........            
T Consensus       162 l~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~  241 (346)
T d1cm8a_         162 ILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAE  241 (346)
T ss_dssp             ECCCTTCEECCSSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHH
T ss_pred             cccccceeccCCccccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCChHHHHHHHHhccCCCcHH
Confidence            999999854                       246889999999999999999999995432110000            


Q ss_pred             ---------HHHHHHHhcC-CC---CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          527 ---------QTTLMQVLDG-NA---GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       527 ---------~~~~~~ild~-~~---~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                               .......+.. ..   ...+..+++.+.+|+.+||..|  |..|||+.++++.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~d--P~~R~ta~eiL~H  301 (346)
T d1cm8a_         242 FVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLD--AEQRVTAGEALAH  301 (346)
T ss_dssp             HHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSS--TTTSCCHHHHHHS
T ss_pred             HHhhhcchhhhhhhccCCcccccchHHhccCCCHHHHHHHHHHCcCC--hhHCcCHHHHhcC
Confidence                     0000011111 11   1122356788999999999999  8899999999763

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=1.7e-37  Score=328.54  Aligned_cols=219  Identities=18%  Similarity=0.276  Sum_probs=171.7

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcC-CCCccceeccccc----ceeEEEe
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVR-HPHLVAVMGCCSE----LKCIVFE  408 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~-HpnIV~l~g~~~~----~~~LV~E  408 (683)
                      ++|.. .+.+|+|+||+||+|+.  +|+.||||+++. .....+.+|+.+|..+. ||||++++++|..    ..++|||
T Consensus        35 d~y~i-~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~-~~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~e  112 (328)
T d3bqca1          35 DDYQL-VRKLGRGKYSEVFEAINITNNEKVVVKILKP-VKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFE  112 (328)
T ss_dssp             GGEEE-EEEEEECSSEEEEEEEETTTTEEEEEEEECS-SCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEEE
T ss_pred             cCeEE-EEEEecCcCeEEEEEEECCCCCEEEEEEECH-HHHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEEe
Confidence            34543 46678999999999998  689999999964 34678999999999995 9999999999853    5899999


Q ss_pred             ecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCC-cEEEecCCC
Q 005680          409 YMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL-VAKISGLGL  487 (683)
Q Consensus       409 y~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~-~~KL~DFGl  487 (683)
                      ||.+|+|..+.             ..+++..+..|+.||+.||.|||+   .+||||||||+||||+.++ .+||+|||+
T Consensus       113 ~~~~~~L~~~~-------------~~l~e~~i~~i~~qil~aL~~LH~---~gIvHrDiKp~NILi~~~~~~vkl~DFG~  176 (328)
T d3bqca1         113 HVNNTDFKQLY-------------QTLTDYDIRFYMYEILKALDYCHS---MGIMHRDVKPHNVMIDHEHRKLRLIDWGL  176 (328)
T ss_dssp             CCCSCBGGGTT-------------TSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTTEEEECCGGG
T ss_pred             ecCCCcHHHHh-------------cCCCHHHHHHHHHHHHHHHHHHhh---cccccccccccceEEcCCCCeeeeccccc
Confidence            99999997665             358999999999999999999999   6799999999999998655 699999999


Q ss_pred             ccc-------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhh--------hhHHHHHHHh
Q 005680          488 NIC-------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMA--------LDQTTLMQVL  534 (683)
Q Consensus       488 a~~-------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~--------~~~~~~~~il  534 (683)
                      |+.                         ..++.++|||||||++|+|++|+.||........        ..........
T Consensus       177 a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~  256 (328)
T d3bqca1         177 AEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYI  256 (328)
T ss_dssp             CEECCTTCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHH
T ss_pred             ceeccCCCcccccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchhhhhh
Confidence            853                         2468899999999999999999999853211000        0000000000


Q ss_pred             c---------------C---------CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          535 D---------------G---------NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       535 d---------------~---------~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                      .               .         ........+++++.+||.+||..|  |.+|||+.++++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~d--P~~R~ta~e~L~  318 (328)
T d3bqca1         257 DKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYD--HQSRLTAREAME  318 (328)
T ss_dssp             HHTTCCCCGGGGGTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSS--GGGSCCHHHHHT
T ss_pred             hhcccccCcccchhcccccccchhhcccccccccCCHHHHHHHHHHccCC--hhHCcCHHHHhc
Confidence            0               0         001112346788999999999999  889999999865

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1e-37  Score=326.07  Aligned_cols=226  Identities=15%  Similarity=0.178  Sum_probs=174.5

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccccc---ceeEEEeecCCCCc
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCCSE---LKCIVFEYMPNGNL  415 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~---~~~LV~Ey~~ggsL  415 (683)
                      ..+.+|+|+||.||+|++  +|+.||||++........+..|+.+++.++|+|+|.+++.|..   ..++||||+. |+|
T Consensus        11 l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~~~-~~l   89 (299)
T d1ckia_          11 LGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLG-PSL   89 (299)
T ss_dssp             EEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTTSCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEECCC-CBH
T ss_pred             EeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhccCHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEEcC-Cch
Confidence            346779999999999998  5899999998755555678999999999998887776665532   6789999994 677


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCccccc---CCCcEEEecCCCccc--
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLD---RNLVAKISGLGLNIC--  490 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld---~~~~~KL~DFGla~~--  490 (683)
                      .+.+.         .....+++..+..++.||+.||.|||+   ++||||||||+|||++   .+..+||+|||+|+.  
T Consensus        90 ~~~~~---------~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~  157 (299)
T d1ckia_          90 EDLFN---------FCSRKFSLKTVLLLADQMISRIEYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYR  157 (299)
T ss_dssp             HHHHH---------HTTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECB
T ss_pred             hhhhh---------hccCCCcHHHHHHHHHHHHHHHHHHHH---CCeeeccCCHhhccccccCCCceeeeeccCcceecc
Confidence            76663         244579999999999999999999999   7799999999999875   456899999999853  


Q ss_pred             ------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhH--HHHHHHhcCCC
Q 005680          491 ------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQ--TTLMQVLDGNA  538 (683)
Q Consensus       491 ------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~--~~~~~ild~~~  538 (683)
                                                    ..++.++|||||||++|||+||++||...........  ...........
T Consensus       158 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~~~  237 (299)
T d1ckia_         158 DARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPI  237 (299)
T ss_dssp             CTTTCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHSCH
T ss_pred             ccccccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcccCCCCh
Confidence                                          2478899999999999999999999964322100000  00011111111


Q ss_pred             CCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHH
Q 005680          539 GIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRK  581 (683)
Q Consensus       539 ~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~  581 (683)
                      ...+..+|+++.+|+..||+.|  |.+||++.++.+.|+.+..
T Consensus       238 ~~~~~~~p~~~~~li~~cl~~~--p~~RP~~~~i~~~l~~~~~  278 (299)
T d1ckia_         238 EVLCKGYPSEFATYLNFCRSLR--FDDKPDYSYLRQLFRNLFH  278 (299)
T ss_dssp             HHHTTTSCHHHHHHHHHHHHSC--TTCCCCHHHHHHHHHHHHH
T ss_pred             hHhccCCCHHHHHHHHHHccCC--hhHCcCHHHHHHHHHHHHH
Confidence            1123356788999999999999  7799999999998888754

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-38  Score=333.43  Aligned_cols=222  Identities=17%  Similarity=0.247  Sum_probs=170.2

Q ss_pred             cCccccccccccCCceEEEEEEE--CCeeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCCccceeccccc-------c
Q 005680          336 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL----SEEDFQAKVSFLTAVRHPHLVAVMGCCSE-------L  402 (683)
Q Consensus       336 ~~F~~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~----~~~~~~~Ev~iL~~l~HpnIV~l~g~~~~-------~  402 (683)
                      +.|. ..+.+|+|+||+||+|.+  +|+.||||+++...    ....+.+|+.+|++++|||||++++++..       .
T Consensus        18 ~rY~-i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~   96 (348)
T d2gfsa1          18 ERYQ-NLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN   96 (348)
T ss_dssp             TTEE-EEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCC
T ss_pred             CCeE-EEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCc
Confidence            4453 456778999999999997  69999999997332    23468899999999999999999998742       3


Q ss_pred             eeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEE
Q 005680          403 KCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKI  482 (683)
Q Consensus       403 ~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL  482 (683)
                      .++||+|+.||+|.+++.           ...+++..+..|+.||+.||.|||+   .+|+||||||+|||++.++.+|+
T Consensus        97 ~~~i~~~~~gg~L~~~~~-----------~~~l~e~~~~~i~~qil~aL~~LH~---~giiHrDiKp~NILi~~~~~~kl  162 (348)
T d2gfsa1          97 DVYLVTHLMGADLNNIVK-----------CQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKI  162 (348)
T ss_dssp             CCEEEEECCSEEHHHHHT-----------TCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEE
T ss_pred             eEEEEEeecCCchhhhcc-----------cccccHHHHHHHHHHHHHHHHHHHh---CCCcccccCCccccccccccccc
Confidence            467788889999999983           2469999999999999999999999   67999999999999999999999


Q ss_pred             ecCCCccc-----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhhH------------
Q 005680          483 SGLGLNIC-----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALDQ------------  527 (683)
Q Consensus       483 ~DFGla~~-----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~~------------  527 (683)
                      +|||++..                       ..++.++|||||||++|+|++|++||...........            
T Consensus       163 ~dfg~a~~~~~~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~~~~~i~~~~~~~~~~~  242 (348)
T d2gfsa1         163 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAEL  242 (348)
T ss_dssp             CCC----CCTGGGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHH
T ss_pred             cccchhcccCcccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHH
Confidence            99999853                       2468899999999999999999999953221100000            


Q ss_pred             ------HHHHHHhcC--CCCCC-----ChhhHHHHHHHHHHhhhcCCCccccccHHHHHH
Q 005680          528 ------TTLMQVLDG--NAGIW-----PLDLAEELAGIALKCLSADQDANRDLRIAGVMK  574 (683)
Q Consensus       528 ------~~~~~ild~--~~~~~-----p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~  574 (683)
                            .........  .....     ...+++.+.+||.+||..|  |.+|||+.|+++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~d--P~~R~ta~elL~  300 (348)
T d2gfsa1         243 LKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLD--SDKRITAAQALA  300 (348)
T ss_dssp             HTTCCCHHHHHHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSS--GGGSCCHHHHHT
T ss_pred             hhhccchhhhhhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCC--hhhCcCHHHHhc
Confidence                  000001110  00111     1245788999999999999  889999999875

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=9.4e-37  Score=318.54  Aligned_cols=228  Identities=14%  Similarity=0.124  Sum_probs=179.0

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcCCCCCHHHHHHHHHHHHhcCC-CCccceeccccc--ceeEEEeecCCCCc
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGLSEEDFQAKVSFLTAVRH-PHLVAVMGCCSE--LKCIVFEYMPNGNL  415 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~H-pnIV~l~g~~~~--~~~LV~Ey~~ggsL  415 (683)
                      ..+.+|+|+||+||+|++  +|+.||||++........+.+|+.++..+.| +|++.+++++.+  ..++||||+ +|+|
T Consensus         9 i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~~-~~~l   87 (293)
T d1csna_           9 VGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL-GPSL   87 (293)
T ss_dssp             EEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC-CCBH
T ss_pred             EEEEEecCCCeEEEEEEECCCCCEEEEEEEccccCcHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEec-CCCH
Confidence            346779999999999998  6899999998755555678899999999975 899999988865  789999999 6899


Q ss_pred             hhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccC-----CCcEEEecCCCccc
Q 005680          416 RDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDR-----NLVAKISGLGLNIC  490 (683)
Q Consensus       416 ~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~-----~~~~KL~DFGla~~  490 (683)
                      .+++..         ....+++..+..|+.|++.||.|||+   .+||||||||+||||+.     ++.+||+|||+|+.
T Consensus        88 ~~~~~~---------~~~~~~~~~~~~i~~q~~~~l~~lH~---~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~  155 (293)
T d1csna_          88 EDLLDL---------CGRKFSVKTVAMAAKQMLARVQSIHE---KSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKF  155 (293)
T ss_dssp             HHHHHH---------TTTCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEE
T ss_pred             HHHHHh---------hccchhhHHHHHHHHHHHHHHHHHHH---CCceeccCCccceeecCcccccCCceEEcccceeEE
Confidence            998842         34569999999999999999999999   77999999999999974     57899999999853


Q ss_pred             --------------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhhh-HHHHHHH-hcC
Q 005680          491 --------------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMALD-QTTLMQV-LDG  536 (683)
Q Consensus       491 --------------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~~-~~~~~~i-ld~  536 (683)
                                                      ..++.++|||||||++|||+||+.||.......... ...+... ...
T Consensus       156 ~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~~~  235 (293)
T d1csna_         156 YRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQST  235 (293)
T ss_dssp             SBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHS
T ss_pred             cccCccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHHhccCCC
Confidence                                            247889999999999999999999996322110000 0001010 001


Q ss_pred             CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHHHHHHHHhc
Q 005680          537 NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKELDEVRKKA  583 (683)
Q Consensus       537 ~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~L~~l~~~~  583 (683)
                      .....+..+|+++.+++..|+..+  |.+||++..+.+.|+.+.+..
T Consensus       236 ~~~~l~~~~p~~l~~ii~~~~~~~--~~~rP~y~~l~~~l~~~~~~~  280 (293)
T d1csna_         236 PLRELCAGFPEEFYKYMHYARNLA--FDATPDYDYLQGLFSKVLERL  280 (293)
T ss_dssp             CHHHHTTTSCHHHHHHHHHHHHCC--TTCCCCHHHHHHHHHHHHHHT
T ss_pred             ChHHhcCCCCHHHHHHHHHHhcCC--cccCcCHHHHHHHHHHHHHHc
Confidence            111122356788999999999999  779999999988888876543

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-37  Score=328.32  Aligned_cols=217  Identities=17%  Similarity=0.190  Sum_probs=165.7

Q ss_pred             cccccccCCceEEEEEEE--CCeeEEEEEcCCCC-C---HHHHHHHHHHHHhcCCCCccceecccc--------cceeEE
Q 005680          341 RFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-S---EEDFQAKVSFLTAVRHPHLVAVMGCCS--------ELKCIV  406 (683)
Q Consensus       341 ~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-~---~~~~~~Ev~iL~~l~HpnIV~l~g~~~--------~~~~LV  406 (683)
                      ..+.+|+|+||+||+|.+  +|..||||++.... .   ...+.+|+.+|++++|||||+++++|.        ...|+|
T Consensus        21 i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~~~iv  100 (355)
T d2b1pa1          21 NLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLV  100 (355)
T ss_dssp             EEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEEEE
T ss_pred             EEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCceeEEE
Confidence            346789999999999998  59999999997332 2   246889999999999999999999984        267999


Q ss_pred             EeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcEEEecCC
Q 005680          407 FEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVAKISGLG  486 (683)
Q Consensus       407 ~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~KL~DFG  486 (683)
                      ||||.++.+ +.+.            ..+++..+..++.||+.||.|||+   .+|+||||||+|||++.++.+|++|||
T Consensus       101 ~Ey~~~~l~-~~~~------------~~~~~~~i~~~~~qil~gl~~LH~---~giiHrDlKP~Nil~~~~~~~kl~df~  164 (355)
T d2b1pa1         101 MELMDANLC-QVIQ------------MELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFG  164 (355)
T ss_dssp             EECCSEEHH-HHHT------------SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCCC
T ss_pred             EeccchHHH-Hhhh------------cCCCHHHHHHHHHHHHHHHHHhhh---cccccccCCccccccccccceeeechh
Confidence            999976544 4441            348999999999999999999999   779999999999999999999999999


Q ss_pred             Cccc------------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhh-----------------
Q 005680          487 LNIC------------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMAL-----------------  525 (683)
Q Consensus       487 la~~------------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~-----------------  525 (683)
                      +++.                        ..+++++||||+||++|+|++|++||.........                 
T Consensus       165 ~~~~~~~~~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~  244 (355)
T d2b1pa1         165 LARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKK  244 (355)
T ss_dssp             C---------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHTT
T ss_pred             hhhccccccccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCCCHHHHHHHHHHhccCCCHHHHHH
Confidence            8743                        35789999999999999999999999532211000                 


Q ss_pred             hHHHHHHHhcCC-------------------CCCCChhhHHHHHHHHHHhhhcCCCccccccHHHHHHH
Q 005680          526 DQTTLMQVLDGN-------------------AGIWPLDLAEELAGIALKCLSADQDANRDLRIAGVMKE  575 (683)
Q Consensus       526 ~~~~~~~ild~~-------------------~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~eVl~~  575 (683)
                      ............                   ....+...++++.+|+.+||..|  |..|||+.|+++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~d--P~~R~ta~elL~H  311 (355)
T d2b1pa1         245 LQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVID--PAKRISVDDALQH  311 (355)
T ss_dssp             SCHHHHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSS--TTTSCCHHHHHTS
T ss_pred             hhhhHHHHhhcCccccccccccccccccccccccccccCCHHHHHHHHHHCcCC--hhHCcCHHHHhcC
Confidence            001111111110                   00011246788999999999999  8899999999753

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.9e-32  Score=290.94  Aligned_cols=224  Identities=19%  Similarity=0.263  Sum_probs=165.9

Q ss_pred             ccccccccCCceEEEEEEE--CCeeEEEEEcCCCC-CHHHHHHHHHHHHhcC-----------CCCccceeccccc----
Q 005680          340 ERFRLKCAGDWTNVYRGRL--NHASVAIKTLNNGL-SEEDFQAKVSFLTAVR-----------HPHLVAVMGCCSE----  401 (683)
Q Consensus       340 ~~~~liG~G~fG~Vykg~~--~g~~VAvK~l~~~~-~~~~~~~Ev~iL~~l~-----------HpnIV~l~g~~~~----  401 (683)
                      ...+.+|+|+||+||+|+.  +|+.||||+++... ..+.+.+|+.+++.++           |+|||++++++..    
T Consensus        16 ~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~~~~   95 (362)
T d1q8ya_          16 ILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPN   95 (362)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETT
T ss_pred             EEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeecccc
Confidence            3457789999999999998  68999999997432 3467788999998875           5789999988743    


Q ss_pred             ceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCC---
Q 005680          402 LKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNL---  478 (683)
Q Consensus       402 ~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~---  478 (683)
                      ..+++|.++..+.........       .....+++..+..++.||+.||.|||+.  .+|+||||||+||||+.++   
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~i~~i~~qil~al~~lh~~--~~IvHrDlKp~NIll~~~~~~~  166 (362)
T d1q8ya_          96 GVHVVMVFEVLGENLLALIKK-------YEHRGIPLIYVKQISKQLLLGLDYMHRR--CGIIHTDIKPENVLMEIVDSPE  166 (362)
T ss_dssp             EEEEEEEECCCCEEHHHHHHH-------TTTSCCCHHHHHHHHHHHHHHHHHHHHT--TCEECSCCSGGGEEEEEEETTT
T ss_pred             ceeeeeeeccccccccccccc-------ccccCCcHHHHHHHHHHHHHHHHHHhhh--cCcccccCChhHeeeeccCccc
Confidence            456777777665544444322       4567789999999999999999999972  4699999999999998665   


Q ss_pred             ---cEEEecCCCccc----------------------cCCCcccccccHHHHHHHHhhCCCCchhhHHHhhh-hHHHHH-
Q 005680          479 ---VAKISGLGLNIC----------------------DQLNVRSDIRAFGTLLLHLLTGRNWAGLVEKAMAL-DQTTLM-  531 (683)
Q Consensus       479 ---~~KL~DFGla~~----------------------~~~t~ksDVwSlGviL~eLltG~~Pf~~~~~~~~~-~~~~~~-  531 (683)
                         .+||+|||.|..                      ..++.++||||+||++++|++|++||......... ....+. 
T Consensus       167 ~~~~~kl~dfg~s~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~  246 (362)
T d1q8ya_         167 NLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQ  246 (362)
T ss_dssp             TEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHH
T ss_pred             ccceeeEeecccccccccccccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHH
Confidence               499999999853                      35789999999999999999999998632210000 000000 


Q ss_pred             --------------------HHhcC--------------------CCCCCChhhHHHHHHHHHHhhhcCCCccccccHHH
Q 005680          532 --------------------QVLDG--------------------NAGIWPLDLAEELAGIALKCLSADQDANRDLRIAG  571 (683)
Q Consensus       532 --------------------~ild~--------------------~~~~~p~~~~~~l~~Li~~CL~~dP~p~~RPs~~e  571 (683)
                                          ...+.                    .....+...++.+.+|+.+||..|  |.+|||+.|
T Consensus       247 ~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~d--P~~Rpta~e  324 (362)
T d1q8ya_         247 IIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLD--PRKRADAGG  324 (362)
T ss_dssp             HHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSS--TTTCBCHHH
T ss_pred             HHHHhCCCCHHHhhcccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCC--hhHCcCHHH
Confidence                                00000                    012234567889999999999999  889999999


Q ss_pred             HHH
Q 005680          572 VMK  574 (683)
Q Consensus       572 Vl~  574 (683)
                      +++
T Consensus       325 ~L~  327 (362)
T d1q8ya_         325 LVN  327 (362)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            864

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.87  E-value=6.9e-23  Score=199.12  Aligned_cols=142  Identities=14%  Similarity=0.129  Sum_probs=110.1

Q ss_pred             ccccccCCceEEEEEEE-CCeeEEEEEcCCCCC--------------------HHHHHHHHHHHHhcCCCCccceecccc
Q 005680          342 FRLKCAGDWTNVYRGRL-NHASVAIKTLNNGLS--------------------EEDFQAKVSFLTAVRHPHLVAVMGCCS  400 (683)
Q Consensus       342 ~~liG~G~fG~Vykg~~-~g~~VAvK~l~~~~~--------------------~~~~~~Ev~iL~~l~HpnIV~l~g~~~  400 (683)
                      .+.+|+|+||.||+|.+ +|..||||+++....                    ...+..|+..+.++.|++++..+++. 
T Consensus         5 g~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~~-   83 (191)
T d1zara2           5 GKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWE-   83 (191)
T ss_dssp             EEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEEE-
T ss_pred             CCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEec-
Confidence            45778999999999997 789999998762110                    12345688899999999999888664 


Q ss_pred             cceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccCCCCcccccCCCcE
Q 005680          401 ELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSLTPSSILLDRNLVA  480 (683)
Q Consensus       401 ~~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDLKP~NILld~~~~~  480 (683)
                       ..+|||||++++.+.+                 ++......++.|++.||.|||+   .+|+||||||+|||++.++ +
T Consensus        84 -~~~lvme~~~~~~~~~-----------------l~~~~~~~i~~ql~~~l~~lH~---~giiHrDiKP~NILv~~~~-~  141 (191)
T d1zara2          84 -GNAVLMELIDAKELYR-----------------VRVENPDEVLDMILEEVAKFYH---RGIVHGDLSQYNVLVSEEG-I  141 (191)
T ss_dssp             -TTEEEEECCCCEEGGG-----------------CCCSCHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEEETTE-E
T ss_pred             -CCEEEEEeeccccccc-----------------hhhHHHHHHHHHHHHHHHHHhh---CCEEEccCChhheeeeCCC-E
Confidence             3479999998755433                 2333456789999999999999   6799999999999998654 8


Q ss_pred             EEecCCCccc----------------------cCCCcccccccHHHHH
Q 005680          481 KISGLGLNIC----------------------DQLNVRSDIRAFGTLL  506 (683)
Q Consensus       481 KL~DFGla~~----------------------~~~t~ksDVwSlGviL  506 (683)
                      +|+|||+|..                      ..|+.++|+||..--+
T Consensus       142 ~liDFG~a~~~~~~~~~~~l~rd~~~~~~~f~r~y~~~~d~~s~~~~~  189 (191)
T d1zara2         142 WIIDFPQSVEVGEEGWREILERDVRNIITYFSRTYRTEKDINSAIDRI  189 (191)
T ss_dssp             EECCCTTCEETTSTTHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred             EEEECCCcccCCCCCcHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence            9999999854                      2357778888875433

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=4.5e-15  Score=123.63  Aligned_cols=76  Identities=25%  Similarity=0.450  Sum_probs=72.8

Q ss_pred             CCCCccccccccccccCCCcccCCCcchhhHHHHHHHcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHhhcCCC
Q 005680          606 NDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNKQSSV  681 (683)
Q Consensus       606 s~~Ps~f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN~~lr~~I~~w~~~~~~~  681 (683)
                      ..+|+.|.|||+.++|.|||+++.|+||++.+|..|+..++.++|.++.+++...|+||++||++|++|+.+|+|+
T Consensus         2 ~eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~~~~~~   77 (80)
T d2c2la2           2 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV   77 (80)
T ss_dssp             CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred             CCCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHHHHCCCc
Confidence            4689999999999999999999999999999999999877889999999999999999999999999999999987

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.49  E-value=7.9e-15  Score=121.50  Aligned_cols=75  Identities=39%  Similarity=0.716  Sum_probs=71.7

Q ss_pred             CCCCccccccccccccCCCcccCCCcchhhHHHHHHHcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHhhcCC
Q 005680          606 NDVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNKQSS  680 (683)
Q Consensus       606 s~~Ps~f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN~~lr~~I~~w~~~~~~  680 (683)
                      .++|+.|.|||..++|.|||+++.|++|++..|..|+..+..++|.|+.+++...++||++||++|++|+++|+.
T Consensus         3 peiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~~~   77 (78)
T d1t1ha_           3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI   77 (78)
T ss_dssp             CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred             CCCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHHHHHhCc
Confidence            468999999999999999999999999999999999988888999999999999999999999999999999874

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.2e-14  Score=123.90  Aligned_cols=77  Identities=23%  Similarity=0.388  Sum_probs=70.1

Q ss_pred             CCCCCCCccccccccccccCCCcccCCC-cchhhHHHHHHHcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHhhcCC
Q 005680          603 EDSNDVPSVFICPIFQEVMKTPHVAADG-FSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHNKQSS  680 (683)
Q Consensus       603 esss~~Ps~f~cPIs~elm~dPvv~~dG-~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN~~lr~~I~~w~~~~~~  680 (683)
                      .....+|+.|.|||+.++|.|||+++.| +||++.+|..|+.. +.+||+|+.+|....|+||++||.+|++|+.++..
T Consensus        14 ~~~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~-~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~~~   91 (98)
T d1wgma_          14 ETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQ   91 (98)
T ss_dssp             CCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTT
T ss_pred             hhhcCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHh-cCCcccccccccchhhcchHHHHHHHHHHHHHHHH
Confidence            3456899999999999999999999887 59999999999976 67999999999999999999999999999987764

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.30  E-value=6.7e-07  Score=88.17  Aligned_cols=89  Identities=7%  Similarity=0.003  Sum_probs=57.6

Q ss_pred             HHHHhhcCccccccccccCCceEEEEEEECCeeEEEEEcCCC--CCHHHHHHHHHHHHhcC-CCCccceeccccc--cee
Q 005680          330 DIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNG--LSEEDFQAKVSFLTAVR-HPHLVAVMGCCSE--LKC  404 (683)
Q Consensus       330 ei~~at~~F~~~~~liG~G~fG~Vykg~~~g~~VAvK~l~~~--~~~~~~~~Ev~iL~~l~-HpnIV~l~g~~~~--~~~  404 (683)
                      |+......|.... ..++|+.+.||+...++..++||+....  .....+.+|+..+..+. +--+.+++.++.+  ..+
T Consensus         8 ~l~~~~~~~~~~~-~~~G~s~~~v~rv~~~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~~   86 (263)
T d1j7la_           8 ELKKLIEKYRCVK-DTEGMSPAKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSN   86 (263)
T ss_dssp             HHHHHHTTSEEEE-CSCCCSSSEEEEEECSSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEE
T ss_pred             HHHHhhhceEEEE-cCCCCCCCcEEEEEeCCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEecCCceE
Confidence            3444444444332 2234556789999888888899987622  23446788998888774 3224566666543  678


Q ss_pred             EEEeecCCCCchhhh
Q 005680          405 IVFEYMPNGNLRDKL  419 (683)
Q Consensus       405 LV~Ey~~ggsL~~~L  419 (683)
                      +||++++|.++.+..
T Consensus        87 lv~~~l~G~~~~~~~  101 (263)
T d1j7la_          87 LLMSEADGVLCSEEY  101 (263)
T ss_dssp             EEEECCSSEEHHHHT
T ss_pred             EEEEecccccccccc
Confidence            999999988775543

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.16  E-value=1.4e-07  Score=71.94  Aligned_cols=51  Identities=20%  Similarity=0.341  Sum_probs=47.0

Q ss_pred             cccccccccCCCccc-CCCcchhhHHHHHHHcCCCCCCCCCccccCCCCCCCc
Q 005680          613 ICPIFQEVMKTPHVA-ADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPN  664 (683)
Q Consensus       613 ~cPIs~elm~dPvv~-~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN  664 (683)
                      .|||+.++|.+||+. ..|++|++++|..|+.. +.++|+|++++...+|+|.
T Consensus         2 ~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~-~~~CP~c~~~l~~~dLipi   53 (56)
T d2baya1           2 LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEI   53 (56)
T ss_dssp             CCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEEC
T ss_pred             CCccCCchHHhcCccCCCCCcccHHHHHHHHhh-ccCCCccCCcCCHHhceeC
Confidence            699999999999988 48999999999999986 6789999999999999875

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=98.02  E-value=9.8e-06  Score=85.48  Aligned_cols=72  Identities=17%  Similarity=0.112  Sum_probs=50.5

Q ss_pred             ccccCCceEEEEEEE--CCeeEEEEEcCC---------CCCHHHHHHHHHHHHhcC-C--CCccceecccccceeEEEee
Q 005680          344 LKCAGDWTNVYRGRL--NHASVAIKTLNN---------GLSEEDFQAKVSFLTAVR-H--PHLVAVMGCCSELKCIVFEY  409 (683)
Q Consensus       344 liG~G~fG~Vykg~~--~g~~VAvK~l~~---------~~~~~~~~~Ev~iL~~l~-H--pnIV~l~g~~~~~~~LV~Ey  409 (683)
                      -+|.|....||++..  .|+.|+||.-.+         .....+...|+..|..+. +  ..+.+++++..+..++|||+
T Consensus        33 eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~d~~~~~lvmE~  112 (392)
T d2pula1          33 EIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSDTEMAVTVMED  112 (392)
T ss_dssp             ECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEEETTTTEEEECC
T ss_pred             EeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEEcCCCCEEEEec
Confidence            457788899999986  467899996431         123345677888887763 2  34667787777788899999


Q ss_pred             cCCCCc
Q 005680          410 MPNGNL  415 (683)
Q Consensus       410 ~~ggsL  415 (683)
                      +++..+
T Consensus       113 L~~~~~  118 (392)
T d2pula1         113 LSHLKI  118 (392)
T ss_dssp             CTTSEE
T ss_pred             cCCccc
Confidence            987554

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.88  E-value=1.2e-05  Score=78.50  Aligned_cols=69  Identities=17%  Similarity=0.211  Sum_probs=47.8

Q ss_pred             CCceEEEEEEEC-CeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCC--ccceeccccc--ceeEEEeecCCCCchh
Q 005680          348 GDWTNVYRGRLN-HASVAIKTLNNGLSEEDFQAKVSFLTAVRHPH--LVAVMGCCSE--LKCIVFEYMPNGNLRD  417 (683)
Q Consensus       348 G~fG~Vykg~~~-g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~Hpn--IV~l~g~~~~--~~~LV~Ey~~ggsL~~  417 (683)
                      .+-+.||+...+ +..+++|..... ....+..|+..|+.+....  +.++++++.+  ..++||+|++|.++..
T Consensus        22 ~s~~~v~r~~~~~~~~~vlK~~~~~-~~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G~~~~~   95 (255)
T d1nd4a_          22 CSDAAVFRLSAQGRPVLFVKTDLSG-ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLS   95 (255)
T ss_dssp             TSSCEEEEEECTTSCCEEEEEECSC-TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEETTT
T ss_pred             ccCCeEEEEEeCCCCEEEEEeCCcc-CHhHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeeecccccc
Confidence            334789999884 566888886533 3446788988888774323  4556666544  6789999999877644

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00027  Score=59.22  Aligned_cols=63  Identities=16%  Similarity=0.249  Sum_probs=56.6

Q ss_pred             cccccccccccCCCccc-CCCcchhhHHHHHHHcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHh
Q 005680          611 VFICPIFQEVMKTPHVA-ADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLTPNHTLRSLIQEWHN  676 (683)
Q Consensus       611 ~f~cPIs~elm~dPvv~-~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~PN~~lr~~I~~w~~  676 (683)
                      .+.|||..+++.+|+.. +-|++|-+..|..|+.   ..+|..+.++....+.||..|+.+|+.+..
T Consensus        22 ~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~   85 (97)
T d1jm7b_          22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSK   85 (97)
T ss_dssp             TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHH
T ss_pred             cCCCccCCchhhcCceeCCCCCchhHHHHHHHHh---ccccccCCcCchhhCcccHHHHHHHHHHHH
Confidence            36799999999999975 7899999999999984   359999999999999999999999998864

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.12  E-value=0.0053  Score=61.20  Aligned_cols=180  Identities=9%  Similarity=0.055  Sum_probs=95.0

Q ss_pred             cCHHHHHHhhcCcccc----ccccccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCc--cceeccc
Q 005680          326 YAAEDIRLATEDFSER----FRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHL--VAVMGCC  399 (683)
Q Consensus       326 ~s~~ei~~at~~F~~~----~~liG~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnI--V~l~g~~  399 (683)
                      +|.+||.....+|.-.    .+-+..|---+.|+...++..+++|+.....+...+..|+.++..|...++  ...+-..
T Consensus         3 ls~~el~~~l~~Y~lg~~~~~~~i~~G~~N~ny~v~t~~g~yVLri~~~~~~~~~l~~~~~~l~~L~~~g~pvp~pi~~~   82 (316)
T d2ppqa1           3 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKDPLILTLYEKRVEKNDLPFFLGLMQHLAAKGLSCPLPLPRK   82 (316)
T ss_dssp             CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSCCEEEEEECC---CCHHHHHHHHHHHHHHTTCCCCCBCCBT
T ss_pred             CCHHHHHHHHHhCCCCCceEeecCCCCcccCeEEEEECCCcEEEEEcCCCCCHHHHHHHHHHHHhhhhccccccccceec
Confidence            4566777777666431    112234544678999887777999998754455677778888887743222  1111111


Q ss_pred             --------ccceeEEEeecCCCCchhhhhhcc--------------cccccccccccC------------------CHHH
Q 005680          400 --------SELKCIVFEYMPNGNLRDKLFTSQ--------------RNYKNCSRARAL------------------RWLD  439 (683)
Q Consensus       400 --------~~~~~LV~Ey~~ggsL~~~L~~~~--------------~~~~~~~~~~~L------------------~~~~  439 (683)
                              ......++.++.+......-....              ..... ......                  ....
T Consensus        83 ~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (316)
T d2ppqa1          83 DGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEI-KRPNALSVDGWKVLWDKSEERADEVEKG  161 (316)
T ss_dssp             TCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCC-CCBCTTSHHHHHHHHHHHGGGGGGTSTT
T ss_pred             CCCcceeeecccceeeeecccccccccchhHHHHHHHHHHhhhhhhhhccc-ccccccchhhcchhhhHHHHhhhhcchh
Confidence                    124556777776644332110000              00000 000000                  0001


Q ss_pred             HHHHHHHHHhhhhhhc-cCCCCcEEeccCCCCcccccCCCcEEEecCCCccccCCCcccccccHHHHHHHHhh
Q 005680          440 RIHIAHEVCLGLSFLH-STEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVRSDIRAFGTLLLHLLT  511 (683)
Q Consensus       440 ~~~I~~qIa~aL~yLH-~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~~~~t~ksDVwSlGviL~eLlt  511 (683)
                      ....+..+...+.-.+ ..-|.++||+|+.++||+++.+...-|.||+.+..+.+     +|=+++++..++.
T Consensus       162 ~~~~l~~~~~~~~~~~~~~L~~giIHgDl~~dNvl~~~~~v~gvIDF~~~~~~~~-----~~DLAi~~~~~~~  229 (316)
T d2ppqa1         162 LREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACNDLL-----AYDVSICLNAWCF  229 (316)
T ss_dssp             HHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCEEEEH-----HHHHHHHHHHHSB
T ss_pred             HHHHHHHHHHhhhccCccccccccccCCcchhhhhcccccceeEecccccccchh-----hhhHHHHHHHHhh
Confidence            1111222222222222 22346899999999999999988889999999854322     4556888877765

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00029  Score=59.68  Aligned_cols=64  Identities=19%  Similarity=0.307  Sum_probs=57.9

Q ss_pred             ccccccccccCCCcccCCCcchhhHHHHHHHcCC--CCCCCCCccccCCCCCCCcHHHHHHHHHHH
Q 005680          612 FICPIFQEVMKTPHVAADGFSYELEAMEEWLGMG--HDTSPMTNLRLKHKYLTPNHTLRSLIQEWH  675 (683)
Q Consensus       612 f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~g--~~tsP~T~~~l~~~~l~PN~~lr~~I~~w~  675 (683)
                      +.|||-.+++.+|++++-|++|-+..|..|+...  ...+|+-+.++....+.||..+++.|+.++
T Consensus        22 l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~   87 (103)
T d1jm7a_          22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL   87 (103)
T ss_dssp             TSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred             cCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHH
Confidence            5699999999999999999999999999999543  357999999999999999999999888875

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.0036  Score=63.20  Aligned_cols=174  Identities=11%  Similarity=0.081  Sum_probs=94.4

Q ss_pred             cccccCHHHHHHhhcCc--cccccccc-cCCceEEEEEEE-CCeeEEEEEcCCC-CCHHHHHHHHHHHHhcCCCCc--cc
Q 005680          322 AFREYAAEDIRLATEDF--SERFRLKC-AGDWTNVYRGRL-NHASVAIKTLNNG-LSEEDFQAKVSFLTAVRHPHL--VA  394 (683)
Q Consensus       322 ~~~~~s~~ei~~at~~F--~~~~~liG-~G~fG~Vykg~~-~g~~VAvK~l~~~-~~~~~~~~Ev~iL~~l~HpnI--V~  394 (683)
                      .|..++.+-|..|...+  ....++.- .|.--.||++.. +|..|++|+.++. .+...+..|...+..|....|  +.
T Consensus         4 ~f~~L~pd~i~~al~~~g~~~~~~~~~L~s~EN~vy~v~~~dg~~~VlK~~rp~~~s~~~i~~E~~~l~~L~~~gipv~~   83 (325)
T d1zyla1           4 TFQTLHPDTIMDALFEHGIRVDSGLTPLNSYENRVYQFQDEDRRRFVVKFYRPERWTADQILEEHQFALQLVNDEVPVAA   83 (325)
T ss_dssp             CCCCCCHHHHHHHHHHTTCCCCSCCEEECCSSSEEEEECCTTCCCEEEEEECTTTSCHHHHHHHHHHHHHHHHTTCSBCC
T ss_pred             CccccCHHHHHHHHHHcCCCCCcCccccccccceeEEEEcCCCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCCCC
Confidence            45666777776665433  22222211 122347999998 7888999998754 356788999998888742222  22


Q ss_pred             eeccc-------ccceeEEEeecCCCCchhh--------------hhhcccccccccccccCCHH---------------
Q 005680          395 VMGCC-------SELKCIVFEYMPNGNLRDK--------------LFTSQRNYKNCSRARALRWL---------------  438 (683)
Q Consensus       395 l~g~~-------~~~~~LV~Ey~~ggsL~~~--------------L~~~~~~~~~~~~~~~L~~~---------------  438 (683)
                      .+...       ....+.|+++++|..+...              ++....... ......+++.               
T Consensus        84 p~~~~g~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~lG~~LA~lH~~~~~~~-~~~r~~~d~~~~~~~~~~~~~~~~~  162 (325)
T d1zyla1          84 PVAFNGQTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQL-FIHRPTIGLNEYLIEPRKLFEDATL  162 (325)
T ss_dssp             CCCBTTBSCEEETTEEEEEEECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSC-CSSSCBCSHHHHTHHHHHHHHTCSS
T ss_pred             ceecCCCeeeeeeeEEEEEEeecCCcCCCCCCHHHHHHHHHHHHHHHhhcccCC-ccccCCCCHHHHhhhhHHHHHHcCc
Confidence            22211       1256789999987544311              100000000 0011111111               


Q ss_pred             -------HHHHHHHHHHhhhhh-hccCCCCcEEeccCCCCcccccCCCcEEEecCCCccccCCCcccccc
Q 005680          439 -------DRIHIAHEVCLGLSF-LHSTEPRPIVHGSLTPSSILLDRNLVAKISGLGLNICDQLNVRSDIR  500 (683)
Q Consensus       439 -------~~~~I~~qIa~aL~y-LH~~~~~~IiHrDLKP~NILld~~~~~KL~DFGla~~~~~t~ksDVw  500 (683)
                             .....+..+...+.- +....+.++||+|+.|.|||++.+  ..++||+-+..+.  .--|+|
T Consensus       163 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~liHgDlh~~NvL~~~~--~~~IDFdd~~~g~--~~~DLa  228 (325)
T d1zyla1         163 IPSGLKAAFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWRDG--PMFVDLDDARNGP--AVQDLW  228 (325)
T ss_dssp             SCTTTHHHHHHHHHHHHHHHHHHCCSCSCCEECCSSCSGGGEEESSS--EEECCCTTCCEEC--TTHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhccccCCceeecCCCCcccEEEeCC--ceEEechhcccCc--HHHHHH
Confidence                   112223333333222 223345679999999999999743  4589999986543  234655

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.83  E-value=0.00017  Score=59.27  Aligned_cols=66  Identities=11%  Similarity=0.143  Sum_probs=56.6

Q ss_pred             CCCccccccccccccCCCcccCCCcchhhHHHHHHHcCCCCCCCCCccccCCCCCC-CcHHHHHHHH
Q 005680          607 DVPSVFICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLT-PNHTLRSLIQ  672 (683)
Q Consensus       607 ~~Ps~f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~-PN~~lr~~I~  672 (683)
                      .....+.|||-.+++.+|++++-|++|-+..|..|+..+..++|+-+.++....+. |..++.+.+.
T Consensus        19 d~~~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~l~   85 (86)
T d1rmda2          19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILN   85 (86)
T ss_dssp             HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHH
T ss_pred             hhccCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHHhc
Confidence            33455789999999999999999999999999999977778999999998877766 7888887653

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.80  E-value=0.0021  Score=66.83  Aligned_cols=71  Identities=23%  Similarity=0.253  Sum_probs=49.0

Q ss_pred             ccccCCceEEEEEEEC---------CeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCc-cceecccccceeEEEeecCCC
Q 005680          344 LKCAGDWTNVYRGRLN---------HASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHL-VAVMGCCSELKCIVFEYMPNG  413 (683)
Q Consensus       344 liG~G~fG~Vykg~~~---------g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnI-V~l~g~~~~~~~LV~Ey~~gg  413 (683)
                      .+++|-.-.+|++...         +..|.+++.......-...+|..+++.+.-.++ .+++++|.+  .+|+||++|.
T Consensus        49 ~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g~~~~~idr~~E~~i~~~ls~~gl~Pkll~~~~~--g~I~efi~g~  126 (395)
T d1nw1a_          49 RIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPETESHLVAESVIFTLLSERHLGPKLYGIFSG--GRLEEYIPSR  126 (395)
T ss_dssp             EECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCCCHHHHHHHHHHHHHHHHTTSSSCEEEEETT--EEEECCCCEE
T ss_pred             EcCCccccceEEEEeCCCCccccCCCCcEEEEecCCcchhhHHHHHHHHHHHHHhCCCCCeEEEEcCC--ceEEEEeccc
Confidence            3455777889999873         245777776544444566789999988853344 478888765  6899999876


Q ss_pred             Cch
Q 005680          414 NLR  416 (683)
Q Consensus       414 sL~  416 (683)
                      +|.
T Consensus       127 ~l~  129 (395)
T d1nw1a_         127 PLS  129 (395)
T ss_dssp             ECC
T ss_pred             cCC
Confidence            554

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0075  Score=48.12  Aligned_cols=51  Identities=16%  Similarity=0.219  Sum_probs=46.0

Q ss_pred             ccccccccccCCCcccCCCcchhhHHHHHHHcCCCCCCCCCccccCCCCCC
Q 005680          612 FICPIFQEVMKTPHVAADGFSYELEAMEEWLGMGHDTSPMTNLRLKHKYLT  662 (683)
Q Consensus       612 f~cPIs~elm~dPvv~~dG~TyEr~aI~~wl~~g~~tsP~T~~~l~~~~l~  662 (683)
                      ..|||-.+.+.+|++.+-|++|-++.|..|+..+..++|+.+..+.....+
T Consensus        24 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~i   74 (79)
T d1fbva4          24 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI   74 (79)
T ss_dssp             TBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCCCS
T ss_pred             CCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCcee
Confidence            469999999999999999999999999999987778999999999876544

>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Leupaxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.80  E-value=0.032  Score=36.21  Aligned_cols=16  Identities=44%  Similarity=0.972  Sum_probs=13.6

Q ss_pred             ccceeEeecCCCCccee
Q 005680           17 VSGSYFVHHHMPDYCEL   33 (683)
Q Consensus        17 ~~~~~~~~~~~~~~~~~   33 (683)
                      -+|+||||.++| |||.
T Consensus        10 ~~~~Fy~~~g~P-yCe~   25 (32)
T d1x3ha2          10 STGSFFELDGRP-FCEL   25 (32)
T ss_dssp             CSSCCEESSSCE-ECHH
T ss_pred             CCCCeEeECCcc-chHH
Confidence            479999999998 7874

>d1cjaa_ d.144.1.3 (A:) Actin-fragmin kinase, catalytic domain {Physarum polycephalum [TaxId: 5791]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Actin-fragmin kinase, catalytic domain
domain: Actin-fragmin kinase, catalytic domain
species: Physarum polycephalum [TaxId: 5791]

Probab=80.64  E-value=8.7  Score=37.47  Aligned_cols=131  Identities=11%  Similarity=0.080  Sum_probs=78.8

Q ss_pred             ccCCceEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHHhcCCCCccceeccc-------------------------c
Q 005680          346 CAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQAKVSFLTAVRHPHLVAVMGCC-------------------------S  400 (683)
Q Consensus       346 G~G~fG~Vykg~~~g~~VAvK~l~~~~~~~~~~~Ev~iL~~l~HpnIV~l~g~~-------------------------~  400 (683)
                      .+|+-| |+-+..++..++||.- .....+.|..++...-.+.-|...-+. .|                         .
T Consensus        78 ~~Gs~G-v~FV~~e~gaiVlK~s-~tta~E~y~~eLAr~LGvpvPqmRvI~-~~~~E~~~~~~~~l~~~e~d~~I~sel~  154 (342)
T d1cjaa_          78 EKGTEG-LFFVETESGVFIVKRS-TNIESETFCSLLCMRLGLHAPKVRVVS-SNSEEGTNMLECLAAIDKSFRVITTLAN  154 (342)
T ss_dssp             CSTTSC-EEEEEESSCEEEEECC-TTHHHHHHHHHHHHHHTCCCCCEEEEE-SSSHHHHHHHHHHHHHCSSSCHHHHHTT
T ss_pred             ecCCce-EEEEEcCCceEEEecC-CchHHHHHHHHHHHHhCCCCCceEEec-CCCHHHHHHHHHHhcCCChhHHHHHHHh
Confidence            345555 5555667778888874 333446677777777777888865543 11                         1


Q ss_pred             cceeEEEeecCCCCchhhhhhcccccccccccccCCHHHHHHHHHHHHhhhhhhccCCCCcEEeccC-CCCcccccCCC-
Q 005680          401 ELKCIVFEYMPNGNLRDKLFTSQRNYKNCSRARALRWLDRIHIAHEVCLGLSFLHSTEPRPIVHGSL-TPSSILLDRNL-  478 (683)
Q Consensus       401 ~~~~LV~Ey~~ggsL~~~L~~~~~~~~~~~~~~~L~~~~~~~I~~qIa~aL~yLH~~~~~~IiHrDL-KP~NILld~~~-  478 (683)
                      ...+++|||++|.+|.+.-...        ....+....... +..|+.-=.++|.....|+++|+- .+.||+++.++ 
T Consensus       155 ~A~~liMeYvpG~~l~e~~~~~--------a~~~fs~~~l~~-LGkIiaFDifInN~DR~PL~Wrn~GN~~Niml~~n~~  225 (342)
T d1cjaa_         155 QANILLMELVRGITLNKLTTTS--------APEVLTKSTMQQ-LGSLMALDVIVNNSDRLPIAWTNEGNLDNIMLSERGA  225 (342)
T ss_dssp             CSEEEEEECCCEEESTTCCSSS--------HHHHSCHHHHHH-HHHHHHHHHHHTCCSSSCSSSCSCCCGGGEEEESBTT
T ss_pred             cccceeeeccCCcccccccccc--------chhhhcHHHHHH-hhhHHHHHHHHcCCccccccccCCCCccceEEecCCc
Confidence            1467999999988775543111        111122222221 112222224677776567787743 89999998877 


Q ss_pred             cEEEecCCCc
Q 005680          479 VAKISGLGLN  488 (683)
Q Consensus       479 ~~KL~DFGla  488 (683)
                      .+..+|=|..
T Consensus       226 ~~~~IDs~i~  235 (342)
T d1cjaa_         226 TVVPIDSKII  235 (342)
T ss_dssp             CEEECSCCCC
T ss_pred             EEEEecCCcc
Confidence            7888886655