Citrus Sinensis ID: 005699

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680--
MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGKTPDKPPKDTQGLGSHLDESRRASSYHSYSQSPPYDYQYEDRRYGKLGAVLTRKPGSDRGHYVGKISSLVHSPGRMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPNFQKDAGFNSPPVQLSRDVSSLKANFKRDVDGIPHPKRTTSLGSMGSFDSNSVSLKSCNSGGLTDVSEHDDQAAGAPLDKISTFPQSHGPVNYGGLDLFEAPVVPETVPSTAPPIDLFQLPETSAASITEQPSTAILNRNPQELSIPKNEGWATFDTPPSAASIPGTESLSHAMVPANEGSSVKSDQFPSSNTSMQWPAFQNSGANGPSPSSDPWSGNLHIVQAPAVATSAQVVSAASDPWPGNLHNGEAPAIATNMQSWNAFDDFTSHLPSEGFKPNSEPHVDAYMPSPTPDQYLAIVSQETNDDGNPRVASHDGPPNMTVPSQADMGPSYNPSMFPLMGQMRTHATEHKSTNPFDFPCDSDLEQNNMFLDMSSLQAALPNAELPSPFLGGATQSWFPQNPVSPFVQAAAQGGLAYMSGQSPSAQLANIPTQEPVASVGGNPFA
cccHHHHHHHHHHHHHHHcccccccccccccccccEEEEcccEEEEcccHHHHHcccccEEEEEcccccHHHHHHHHHHcHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccHHHHHHHHHHHHccccccccccccccccEEEEEEEEEEEEEccccccccccEEEEEccccccHHHHHHHHHHcHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccHcccccccccccccccccccccHHHHHHccccccccccccccccccccccHEEEccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccHHHccccccccccccccccccccccccccHHHcccccccccccccccccEEcccccccc
MGSRKEEERNEKIIRGlmklppnrrcincnslgpqyvctnfWTFVCMTcsgihrefthrvksvsmskFTSQEVEALQNGGNQRAREIYLKDwdfqrqrlpdnsnvnKVRDFIKNVYvdrryaggktpdkppkdtqglgshldesrrassyhsysqsppydyqyedrrygKLGAvltrkpgsdrghyvgkisslvhspgrmseqMFEDRfanegscsrisdysvssggdpfrpgaqspnfqkdagfnsppvqlsrdVSSLKAnfkrdvdgiphpkrttslgsmgsfdsnsvslkscnsggltdvsehddqaagapldkistfpqshgpvnyggldlfeapvvpetvpstappidlfqlpetsaasiteqpstailnrnpqelsipknegwatfdtppsaasipgteslshamvpanegssvksdqfpssntsmqwpafqnsgangpspssdpwsgnlhivqapavatSAQVvsaasdpwpgnlhngeapaiatnmqswnafddftshlpsegfkpnsephvdaympsptpdQYLAIVSQetnddgnprvashdgppnmtvpsqadmgpsynpsmfplmgqmrthatehkstnpfdfpcdsdleqnnmfLDMSSLQaalpnaelpspflggatqswfpqnpvspfVQAAAQGglaymsgqspsaqlaniptqepvasvggnpfa
mgsrkeeernekiirglmklppnrRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDwdfqrqrlpdnsnvnkvrdFIKNVyvdrryaggktpdkppkdtqgLGSHLDEsrrassyhsysqsppydyqyEDRRYGKLGAVLtrkpgsdrghyVGKISslvhspgrMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPNFQKDAGFNSPPVQLSRDVSSLKanfkrdvdgiphpkrttslgsmgsfdSNSVSLKSCNSGGLTDVSEHDDQAAGAPLDKISTFPQSHGPVNYGGLDLFEAPVVPETVPSTAPPIDLFQLPETSAASITEQPSTAILNRNPQELSIPKNEGWATFDTPPSAASIPGTESLSHAMVPANEGSSVKSDQFPSSNTSMQWPAFQNSGANGPSPSSDPWSGNLHIVQAPAVATSAQVVSAASDPWPGNLHNGEAPAIATNMQSWNAFDDFTSHLPSEGFKPNSEPHVDAYMPSPTPDQYLAIVSQETNDDGNPRVASHDGPPNMTVPSQADMGPSYNPSMFPLMGQMRTHATEHKSTNPFDFPCDSDLEQNNMFLDMSSLQAALPNAELPSPFLGGATQSWFPQNPVSPFVQAAAQGGLAYMSGQSPSAQLANIPTqepvasvggnpfa
MGSrkeeernekiirGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGKTPDKPPKDTQGLGSHLDESRRAssyhsysqsppydyqyEDRRYGKLGAVLTRKPGSDRGHYVGKISSLVHSPGRMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPNFQKDAGFNSPPVQLSRDVSSLKANFKRDVDGIPHPKRTTSLGSMGSFDSNSVSLKSCNSGGLTDVSEHDDQAAGAPLDKISTFPQSHGPVNYGGLDLFEAPVVPETVPSTAPPIDLFQLPETSAASITEQPSTAILNRNPQELSIPKNEGWATFDTPPSAASIPGTESLSHAMVPANEGSSVKSDQFPSSNTSMQWPAFQNSGANGPSPSSDPWSGNLHIvqapavatsaqvvsaasDPWPGNLHNGEAPAIATNMQSWNAFDDFTSHLPSEGFKPNSEPHVDAYMPSPTPDQYLAIVSQETNDDGNPRVASHDGPPNMTVPSQADMGPSYNPSMFPLMGQMRTHATEHKSTNPFDFPCDSDLEQNNMFLDMSSLQAALPNAELPSPFLGGATQSWFPQNPVSPFVQAAAQGGLAYMSGQSPSAQLANIPTQEPVASVGGNPFA
************IIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSV********************AREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRY*****************************************YEDRRYGKLGAVL********************************************************************************************************************************************************VNYGGLDLFEAPVVP*****************************************************************************************************************LHIVQAPAVAT***V*******************IATNMQSWNAFD*****************************************************************************************************************************LGGATQSWFP*****PFVQ*************************************
***************GLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQR********VNKVRDFIKNVYVDRR**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
**********EKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGK********************************PYDYQYEDRRYGKLGAVLTRKPGSDRGHYVGKISSLVHSPGRMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPNFQKDAGFNSPPVQLSRDVSSLKANFKRDVDGIPHPKRTTSLGSMGSFDSNSVSLKSCNSGGLTDVSEHDDQAAGAPLDKISTFPQSHGPVNYGGLDLFEAPVVPETVPSTAPPIDLFQLPETSAASITEQPSTAILNRNPQELSIPKNEGWATFDTPPSAASIPGTESLSHAMVP*****************SMQWPAFQN***********PWSGNLHIVQAPAVATSAQVVSAASDPWPGNLHNGEAPAIATNMQSWNAFDDFTSHLPSEGFKPNSEPHVDAYMPSPTPDQYLAIVSQETNDDGNPRVASHDGPPNMTVPSQADMGPSYNPSMFPLMGQMRTHATEHKSTNPFDFPCDSDLEQNNMFLDMSSLQAALPNAELPSPFLGGATQSWFPQNPVSPFVQAAAQGGLAYMSGQSPSAQLANIPTQE***********
*******ERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGG********************************************************************************************************************************************************************SVSLKSCNSGGLTDVSEHDDQA********************************************************************************************************************************************************************************************************************************************RVASHDGPPNMTVPSQADMGPSYNPSMFPLMG***********TNPFDFPCDSDLEQNNMFLDMSSLQAALPNAELPSPFLGGATQSWFPQNPVSPFVQAAAQGGLAYMSGQSPSAQLANIPTQEPVASVGGNPFA
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iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGKTPDKPPKDTQGLGSHLDESRRASSYHSYSQSPPYDYQYEDRRYGKLGAVLTRKPGSDRGHYVGKISSLVHSPGRMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPNFQKDAGFNSPPVQLSRDVSSLKANFKRDVDGIPHPKRTTSLGSMGSFDSNSVSLKSCNSGGLTDVSEHDDQAAGAPLDKISTFPQSHGPVNYGGLDLFEAPVVPETVPSTAPPIDLFQLPETSAASITEQPSTAILNRNPQELSIPKNEGWATFDTPPSAASIPGTESLSHAMVPANEGSSVKSDQFPSSNTSMQWPAFQNSGANGPSPSSDPWSGNLHIVQAPAVATSAQVVSAASDPWPGNLHNGEAPAIATNMQSWNAFDDFTSHLPSEGFKPNSEPHVDAYMPSPTPDQYLAIVSQETNDDGNPRVASHDGPPNMTVPSQADMGPSYNPSMFPLMGQMRTHATEHKSTNPFDFPCDSDLEQNNMFLDMSSLQAALPNAELPSPFLGGATQSWFPQNPVSPFVQAAAQGGLAYMSGQSPSAQLANIPTQEPVASVGGNPFA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query682 2.2.26 [Sep-21-2011]
Q8RXE7649 Probable ADP-ribosylation yes no 0.917 0.964 0.475 1e-155
Q8K2K6561 Arf-GAP domain and FG rep yes no 0.173 0.210 0.408 1e-24
Q4KLH5561 Arf-GAP domain and FG rep yes no 0.173 0.210 0.408 1e-24
Q2TA45562 Arf-GAP domain and FG rep yes no 0.173 0.209 0.408 1e-24
P52594562 Arf-GAP domain and FG rep yes no 0.173 0.209 0.408 1e-24
O95081481 Arf-GAP domain and FG rep no no 0.145 0.205 0.405 1e-17
Q80WC7479 Arf-GAP domain and FG rep no no 0.145 0.206 0.405 2e-17
Q9FL69483 Probable ADP-ribosylation no no 0.214 0.302 0.306 6e-16
Q8IYB5467 Stromal membrane-associat no no 0.126 0.184 0.325 6e-13
Q5F413428 Stromal membrane-associat no no 0.164 0.261 0.285 1e-12
>sp|Q8RXE7|AGD14_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD14 OS=Arabidopsis thaliana GN=AGD14 PE=1 SV=2 Back     alignment and function desciption
 Score =  549 bits (1414), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 335/704 (47%), Positives = 413/704 (58%), Gaps = 78/704 (11%)

Query: 1   MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRV 60
           MGS++EEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCT FWTFVCM CSGIHREFTHRV
Sbjct: 2   MGSKREEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREFTHRV 61

Query: 61  KSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRR 120
           KSVSMSKFTS+EVE LQNGGNQRAREIYLK+WD QRQRLP+NSN  +VR+FIKNVYV ++
Sbjct: 62  KSVSMSKFTSKEVEVLQNGGNQRAREIYLKNWDHQRQRLPENSNAERVREFIKNVYVQKK 121

Query: 121 YAGGKTPDKPPKDTQGLGSHLDESRRASSYHSYSQSPPYDYQYEDRRYGKLGAVLTRKPG 180
           YAG    DKP KD+Q   S  D +RRA+SYHSYSQSPPYDYQYE+RRYGK+    T K  
Sbjct: 122 YAGANDADKPSKDSQDHVSSEDMTRRANSYHSYSQSPPYDYQYEERRYGKIPLGFTGKSA 181

Query: 181 SDRGHYVGKISSLVHSPGRMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPNFQ 240
           S +G +  K SS V+SPGR S+ MFED+F+NE S  R SDYSVSS GDPFR   QSPNFQ
Sbjct: 182 SVKGLH-AKASSFVYSPGRFSDHMFEDQFSNEDSAPRASDYSVSSAGDPFRSDIQSPNFQ 240

Query: 241 KDAGFNSPPVQLSRDVSSLKANFKRDVDGIPHPKRTTSLGSMGSFDSNSVSLKSCNSGGL 300
           ++A F SP  Q S    S     +    G  H +RTTS GS+ S DSN +S+KS  SGGL
Sbjct: 241 QEAEFRSPQFQHSNAPPS-----ENLFPGRQH-QRTTSSGSVRSVDSNFMSIKSYTSGGL 294

Query: 301 TDVSEHDDQAAGAPLDKISTFPQSHGPVNYGGLDLFEAPVVP--ETV----PSTA---PP 351
            +      Q  G+   K S             +DLF+ P  P  ++V    PS A   PP
Sbjct: 295 GEAVSESRQNTGSQQGKTSNHVPLVAESTKAPIDLFQLPGAPVAQSVDTFQPSIAPRSPP 354

Query: 352 IDLFQLPETS--------AASITEQPSTAILNRNPQELSIPKNEGWATFDTPPSAASIPG 403
           ++L Q P+T         A ++ +QP++      P ELS PKNEGWA+FD P     +P 
Sbjct: 355 VNLQQAPQTYSFTPANSFAGNLGQQPTS-----RPSELSAPKNEGWASFDNP-----MPA 404

Query: 404 TESLSHAMVPANEGSSVKSDQFPSSNTSMQWPAFQNSGANGPSPSSDPWSGNLHIVQAPA 463
            +S +    P +    +K ++    +TSMQ P +             P + + H +  P+
Sbjct: 405 AKSTNVITSPGDFQLELKIEEILQPSTSMQLPPY-------------PSTVDQHALSIPS 451

Query: 464 VATSAQVVSAASDPWPGNLHNGEAPAIATNMQSWNAFDDFTSHLPSEGFKPNSEPHVDAY 523
                        PW  +L N     +  N Q WNAF D     P +  + N    VD  
Sbjct: 452 -------------PWQEDLSN-VLKDVVDNPQPWNAFPDSIEANPLDSSR-NIHQQVDGA 496

Query: 524 MPSP--TPDQYL-AIVSQETNDDGNPRVASHDGPPNMTVPSQADMGPSYNPSMFPLMGQM 580
             S   T  Q+L + V +E ++DG        G      P    M PSY+   +      
Sbjct: 497 STSSYNTDHQHLESQVLEELSNDGTQTTRIPAGSSAFGFPGNIGMAPSYSEEAW------ 550

Query: 581 RTHATEHKSTNPFDFPCDSDLEQNNMFLDMSSLQAALPNAELPSPFLGGATQSWFPQNPV 640
             H  E KS NPFD P DS+ + N+MFLDMSSLQ ALP+ + P  FL G +Q W   + V
Sbjct: 551 -QHVNEQKSANPFDLPYDSEFDSNDMFLDMSSLQGALPDIQTPQAFLNGVSQPWLAADSV 609

Query: 641 SPFV--QAAAQGGLAYMSGQSPSAQLANIPTQEPVASVGGNPFA 682
             ++   A AQGGLAYM+GQ+ +    N   Q PVA  GGNPFA
Sbjct: 610 PSYLPAPAVAQGGLAYMAGQAST----NSAAQGPVAFTGGNPFA 649
GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).
Arabidopsis thaliana (taxid: 3702)
>sp|Q8K2K6|AGFG1_MOUSE Arf-GAP domain and FG repeat-containing protein 1 OS=Mus musculus GN=Agfg1 PE=1 SV=2 Back     alignment and function description
>sp|Q4KLH5|AGFG1_RAT Arf-GAP domain and FG repeat-containing protein 1 OS=Rattus norvegicus GN=Agfg1 PE=1 SV=1 Back     alignment and function description
>sp|Q2TA45|AGFG1_BOVIN Arf-GAP domain and FG repeat-containing protein 1 OS=Bos taurus GN=AGFG1 PE=2 SV=1 Back     alignment and function description
>sp|P52594|AGFG1_HUMAN Arf-GAP domain and FG repeat-containing protein 1 OS=Homo sapiens GN=AGFG1 PE=1 SV=2 Back     alignment and function description
>sp|O95081|AGFG2_HUMAN Arf-GAP domain and FG repeat-containing protein 2 OS=Homo sapiens GN=AGFG2 PE=1 SV=2 Back     alignment and function description
>sp|Q80WC7|AGFG2_MOUSE Arf-GAP domain and FG repeat-containing protein 2 OS=Mus musculus GN=Agfg2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FL69|AGD5_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1 Back     alignment and function description
>sp|Q8IYB5|SMAP1_HUMAN Stromal membrane-associated protein 1 OS=Homo sapiens GN=SMAP1 PE=1 SV=2 Back     alignment and function description
>sp|Q5F413|SMAP2_CHICK Stromal membrane-associated protein 2 OS=Gallus gallus GN=SMAP2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query682
224123950672 predicted protein [Populus trichocarpa] 0.939 0.953 0.591 0.0
255580246692 HIV-1 rev binding protein, hrbl, putativ 0.941 0.927 0.556 0.0
296085867695 unnamed protein product [Vitis vinifera] 0.938 0.920 0.573 0.0
359480998677 PREDICTED: probable ADP-ribosylation fac 0.913 0.920 0.563 0.0
307136134674 GTPase activating protein [Cucumis melo 0.903 0.913 0.525 0.0
449437662673 PREDICTED: probable ADP-ribosylation fac 0.903 0.915 0.519 0.0
356514062741 PREDICTED: probable ADP-ribosylation fac 0.979 0.901 0.505 0.0
356573913697 PREDICTED: probable ADP-ribosylation fac 0.936 0.916 0.495 0.0
356506188676 PREDICTED: probable ADP-ribosylation fac 0.931 0.939 0.499 1e-173
334182402651 putative ADP-ribosylation factor GTPase- 0.917 0.961 0.475 1e-154
>gi|224123950|ref|XP_002319204.1| predicted protein [Populus trichocarpa] gi|222857580|gb|EEE95127.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/713 (59%), Positives = 491/713 (68%), Gaps = 72/713 (10%)

Query: 1   MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRV 60
           MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTF+C TCSGIHREFTHRV
Sbjct: 1   MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFICTTCSGIHREFTHRV 60

Query: 61  KSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRR 120
           KSVSMSKFTSQEVEALQNGGNQRAREIYLKDW+ QRQRLPDNS V+KVR+FIK+VYVD++
Sbjct: 61  KSVSMSKFTSQEVEALQNGGNQRAREIYLKDWNQQRQRLPDNSKVDKVREFIKDVYVDKK 120

Query: 121 YAGGKTPDKPPKDTQGLGSHLDESRRASSYHSYSQSPPYDYQYEDRRYGKLGAVLTRKPG 180
           YAGG T DKPP+D Q + SH DE+RRA SYHSYSQSPPYD+QYEDRRYGK    LTRKPG
Sbjct: 121 YAGGNTSDKPPRDLQRIRSHEDETRRACSYHSYSQSPPYDFQYEDRRYGKQTNTLTRKPG 180

Query: 181 SDRGHYVGKISSLVHSPGRMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPNFQ 240
           SDRG  VGK++S + SP R++E++FEDRFANEGS SR+SDYSVSSGGDP R GA+SPNFQ
Sbjct: 181 SDRGLNVGKMASFICSPTRLNERVFEDRFANEGSVSRVSDYSVSSGGDPVRSGAESPNFQ 240

Query: 241 KDAGFNSPPVQLSRDVSSLKANFKRDVDGIPHPKRTTSLGSMGSFDSNSVSLKSCNSGGL 300
           KD  F SPP+Q SRD S       + +   P  +RTTSLGSMGSFDS SVS+KS NSG L
Sbjct: 241 KDIAF-SPPIQPSRDASLC----YQMILNCPSIQRTTSLGSMGSFDSLSVSIKSYNSGSL 295

Query: 301 TDVSEHDDQAAGAPLDKISTFPQSHGPVNYGGLDLFEAPVVPETVPSTAPPIDLFQLPET 360
            D+     QAAG P + +  FP S    ++  LDLF+ PV PE     APPIDLFQLP T
Sbjct: 296 LDIVAEAGQAAGNPQENMPAFPVS-SVSSHASLDLFKEPVAPEPASPMAPPIDLFQLPAT 354

Query: 361 SAA-----------------------------SITEQPSTAILNRNPQELSIPKNEGWAT 391
           S A                             S  +Q  T++  ++P   S+PKNEGWAT
Sbjct: 355 SPAPSVDLFQVPPASSINLYQPSQTSLPSTLGSYQQQSVTSLDEKSPHS-SLPKNEGWAT 413

Query: 392 FDTPPSAASIPGTESLSHAMVPANEGSSVKSDQFPSSNTSMQWPAFQNSGANGPSPSSDP 451
           FD P   AS PG E+L+ ++ P+N GSS   DQ PS +TSMQWP FQNS  +  S   DP
Sbjct: 414 FDGPQPIASTPGPENLTSSVGPSNAGSS-NFDQVPSLHTSMQWPPFQNSVDHSSSSVPDP 472

Query: 452 WSGNLHIVQAPAVATSAQVVSAASDPWPGNLHNGEAPAIATNMQSWNA--FDDFTSHLPS 509
           W G++H VQA                  GN          T+ Q+W+A  FDD  + +P 
Sbjct: 473 WLGDVHSVQA-----------------TGN----------TSSQNWSAFEFDDSVAGIPL 505

Query: 510 EGFKPNSEPHVDAYMPSPTPDQYLAIVSQETNDDGNPRVASHDGPPNMTVPSQADMGPSY 569
           EG K +SEP    Y PSPT DQ +  V Q+ N DG  R A +   P  + PS    GPSY
Sbjct: 506 EGIKQSSEPQT-LYNPSPTADQLINCVLQDFNKDGIQRTAYNGVLPGPSEPSDIVAGPSY 564

Query: 570 NPSMFPLMGQMRTHATEHKSTNPFDFPCDSDLEQNNMFLDMSSLQAALPNAELPSPFLGG 629
            PS  PL+    +HA +HKS NPFD P +SDLE +NMF+DMSSL+AALPNA  PS FLGG
Sbjct: 565 TPSGHPLV----SHA-DHKSINPFDLPYESDLEPSNMFVDMSSLEAALPNANSPSSFLGG 619

Query: 630 ATQSWFPQNPVSPFVQAAAQGGLAYMSGQSPSAQLANIPTQEPVASVGGNPFA 682
            TQ WFPQ+    ++ AA QGGLAYM+GQ+PS QL N+ TQ PVASVGGNPFA
Sbjct: 620 VTQPWFPQDLAMTYIPAAPQGGLAYMAGQAPSPQLGNVQTQGPVASVGGNPFA 672

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255580246|ref|XP_002530953.1| HIV-1 rev binding protein, hrbl, putative [Ricinus communis] gi|223529468|gb|EEF31425.1| HIV-1 rev binding protein, hrbl, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|296085867|emb|CBI31191.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359480998|ref|XP_003632552.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|307136134|gb|ADN33979.1| GTPase activating protein [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|449437662|ref|XP_004136610.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14-like [Cucumis sativus] gi|449522163|ref|XP_004168097.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356514062|ref|XP_003525726.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14-like [Glycine max] Back     alignment and taxonomy information
>gi|356573913|ref|XP_003555100.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14-like [Glycine max] Back     alignment and taxonomy information
>gi|356506188|ref|XP_003521869.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14-like [Glycine max] Back     alignment and taxonomy information
>gi|334182402|ref|NP_001184942.1| putative ADP-ribosylation factor GTPase-activating protein AGD14 [Arabidopsis thaliana] gi|332190213|gb|AEE28334.1| putative ADP-ribosylation factor GTPase-activating protein AGD14 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query682
TAIR|locus:2142115602 NIG "NSP (nuclear shuttle prot 0.293 0.332 0.482 1.3e-53
TAIR|locus:2125697628 AT4G32630 [Arabidopsis thalian 0.480 0.522 0.363 1.1e-48
ZFIN|ZDB-GENE-040426-1520547 agfg1b "ArfGAP with FG repeats 0.153 0.191 0.420 5.7e-18
UNIPROTKB|O95081481 AGFG2 "Arf-GAP domain and FG r 0.171 0.243 0.386 8.1e-18
UNIPROTKB|P52594562 AGFG1 "Arf-GAP domain and FG r 0.149 0.181 0.413 1.7e-17
RGD|1560041560 Agfg1 "ArfGAP with FG repeats 0.149 0.182 0.413 1.8e-17
DICTYBASE|DDB_G0275571 930 DDB_G0275571 "Arf GTPase activ 0.175 0.129 0.424 2.4e-17
UNIPROTKB|Q2TA45562 AGFG1 "Arf-GAP domain and FG r 0.149 0.181 0.413 9.7e-17
UNIPROTKB|D4A4Q8529 Agfg1 "Arf-GAP domain and FG r 0.149 0.192 0.413 1.1e-16
MGI|MGI:2443267479 Agfg2 "ArfGAP with FG repeats 0.167 0.237 0.379 1.6e-16
TAIR|locus:2142115 NIG "NSP (nuclear shuttle protein)-interacting GTPase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 468 (169.8 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
 Identities = 108/224 (48%), Positives = 132/224 (58%)

Query:    17 LMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEAL 76
             L+KLP N+RCINCNSLGPQYVCT FWTFVC  CSGIHREFTHRVKS+SM+KFTSQEV AL
Sbjct:    18 LLKLPENKRCINCNSLGPQYVCTTFWTFVCTNCSGIHREFTHRVKSISMAKFTSQEVTAL 77

Query:    77 QNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGKTPDKPPKDTQG 136
             + GGNQ A++IY K  D QRQ +PD SNV ++RDFI++VYV++RY   K  DK P +T+ 
Sbjct:    78 KEGGNQHAKDIYFKGLDQQRQSVPDGSNVERLRDFIRHVYVNKRYTNEKNDDKSPSETRS 137

Query:   137 LGSHLDESRRAXXXXXXXXXXXXXXXXEDRRYGKLGAVLTRKPGSDRG--HYVGKISSLV 194
                    SR                   DRRYG   +   R PG + G  + V    S  
Sbjct:   138 SSG----SRSPPYEDGY-----------DRRYGDRSSPGGRSPGFETGSRNAVNNRKSPA 182

Query:   195 HSPGRMSEQMFEDRF-----ANEGSCSRISDYSVSSGGDPF-RP 232
               P  +++   EDRF     + EGS S      + S   P  RP
Sbjct:   183 R-PEILNDWRREDRFGGRKTSEEGSQSPEQVKDLGSASPPVARP 225
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0008060 "ARF GTPase activator activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0032312 "regulation of ARF GTPase activity" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0003924 "GTPase activity" evidence=IDA
GO:0005525 "GTP binding" evidence=IDA
GO:0006913 "nucleocytoplasmic transport" evidence=IDA
GO:0009615 "response to virus" evidence=IMP
TAIR|locus:2125697 AT4G32630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1520 agfg1b "ArfGAP with FG repeats 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|O95081 AGFG2 "Arf-GAP domain and FG repeat-containing protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P52594 AGFG1 "Arf-GAP domain and FG repeat-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1560041 Agfg1 "ArfGAP with FG repeats 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275571 DDB_G0275571 "Arf GTPase activating protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TA45 AGFG1 "Arf-GAP domain and FG repeat-containing protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|D4A4Q8 Agfg1 "Arf-GAP domain and FG repeat-containing protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2443267 Agfg2 "ArfGAP with FG repeats 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RXE7AGD14_ARATHNo assigned EC number0.47580.91780.9645yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_XIII2287
hypothetical protein (672 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query682
PLN03131705 PLN03131, PLN03131, hypothetical protein; Provisio 0.0
PLN03119648 PLN03119, PLN03119, putative ADP-ribosylation fact 1e-170
pfam01412117 pfam01412, ArfGap, Putative GTPase activating prot 2e-41
smart00105119 smart00105, ArfGap, Putative GTP-ase activating pr 3e-22
COG5347319 COG5347, COG5347, GTPase-activating protein that r 4e-14
PLN03114395 PLN03114, PLN03114, ADP-ribosylation factor GTPase 2e-05
>gnl|CDD|178677 PLN03131, PLN03131, hypothetical protein; Provisional Back     alignment and domain information 
 Score =  750 bits (1936), Expect = 0.0
 Identities = 408/734 (55%), Positives = 481/734 (65%), Gaps = 81/734 (11%)

Query: 1   MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRV 60
           MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQ+VCTNFWTF+CMTCSGIHREFTHRV
Sbjct: 1   MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIHREFTHRV 60

Query: 61  KSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRR 120
           KSVSMSKFTSQ+VEALQNGGNQRAREIYLKDWD QRQRLPDNS V+K+R+FIK++YVD++
Sbjct: 61  KSVSMSKFTSQDVEALQNGGNQRAREIYLKDWDQQRQRLPDNSKVDKIREFIKDIYVDKK 120

Query: 121 YAGGKTPDKPPKDTQGLGSHLDESRRASSYHSYSQSPPYDYQYEDRRYGKLGAVLTRKPG 180
           YAGGKT DKPP+D Q + SH DE+RRA SYHSYSQSPPYD+QYEDRRYGK   +LTRKPG
Sbjct: 121 YAGGKTHDKPPRDLQRIRSHEDETRRACSYHSYSQSPPYDFQYEDRRYGKQAGILTRKPG 180

Query: 181 SDRGHYVGKISSLVHSPGRMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPNFQ 240
           SDRG  VGK++S + SP R++++MFEDRFANEGS S +SDYSVSSGGD  R GA+SPNFQ
Sbjct: 181 SDRGLNVGKMASFICSPTRLNDRMFEDRFANEGSVSGVSDYSVSSGGDLVRSGAESPNFQ 240

Query: 241 KDAGFNSPPVQLSRDVSS-----------LKANFKRDVDGIPHPKRTTSLGSMGSFDSNS 289
           KD  F SPP+Q  +D+               A  K+  +G PH +R+ SLGS+GSFDS S
Sbjct: 241 KDIAF-SPPIQPPKDILGEDVQQRRIDLFSAALCKQGAEGCPHIQRSASLGSIGSFDSLS 299

Query: 290 VSLKSCNSGGLTDVSEHDDQAAGAPLDKISTFPQSHGPVNYGGLDLFEAPVVPETVPSTA 349
           VS+KS NSG L D+    +QAAG   DK+  FP+  G  ++  LD F+APV PE     A
Sbjct: 300 VSIKSFNSGSLADIVAEAEQAAGNHQDKMPAFPRMAGSGSHASLDHFKAPVAPEAAAPMA 359

Query: 350 PPIDLFQLPETSAA-----------------------------------SITEQPSTAIL 374
           PPIDLFQLP TS A                                    IT+Q S   L
Sbjct: 360 PPIDLFQLPATSPAPPVDLFEIPPLDPAPAINAYQPPQTSLPSSIDLFGGITQQQSINSL 419

Query: 375 NRNPQELSIPKNEGWATFDTPPSAASIPGTESLSHAMVPANEGSSVKSDQFPSSNTSMQW 434
           +    ELSIPKNEGWATFD     AS PG E+L+   +  +   S   DQ PS +  MQW
Sbjct: 420 DEKSPELSIPKNEGWATFDGIQPIASTPGNENLTPFSIGPSMAGSANFDQVPSLDKGMQW 479

Query: 435 PAFQNSGANGPSPSSDPWSGNLHIVQAPAVATSAQVVSAASDPWPGNLHNGEAPAIATNM 494
           P FQNS     +    PW G+LH V+A                 P N          T+ 
Sbjct: 480 PPFQNSSDEESASGPAPWLGDLHNVEA-----------------PDN----------TSA 512

Query: 495 QSWNAF--DDFTSHLPSEGFKPNSEPHVDAYMPSPTPDQYLAI-VSQETNDDGNPRVASH 551
           Q+WNAF  DD  + +P EG K +SEP   A    PT DQ +     ++ N DG  R A H
Sbjct: 513 QNWNAFEFDDSVAGIPLEGIKQSSEPQT-AANMPPTADQLIGCKALEDFNKDGIKRTAPH 571

Query: 552 --DGPPNMTVPSQADMGPSYNPSMFPLMGQMRTHATEHKSTNPFDFPCDSDLEQNNMFLD 609
                P +  PS     PSY P   P+M   ++HA +HKS NPFD P DSDLE  NMFLD
Sbjct: 572 GQGELPGLDEPSDILAEPSYTPPAHPIMEHAQSHANDHKSINPFDLPYDSDLEPGNMFLD 631

Query: 610 MSSLQAALPNAELPSPFLG-GATQSWFPQNPVSPFVQAAAQGGLAYMSGQSPSAQLANIP 668
           MSSL+AALP+A LPS FLG G T+ WFPQ+    ++ AA QGGLAYM+GQ+P+ QL N+ 
Sbjct: 632 MSSLEAALPDAHLPSAFLGSGMTEPWFPQDLAMTYIPAAPQGGLAYMAGQAPNPQLGNVQ 691

Query: 669 TQEPVASVGGNPFA 682
           TQ PVA VGGNPFA
Sbjct: 692 TQGPVAFVGGNPFA 705

Length = 705
>gnl|CDD|178666 PLN03119, PLN03119, putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf Back     alignment and domain information
>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 682
PLN03131705 hypothetical protein; Provisional 100.0
PLN03119648 putative ADP-ribosylation factor GTPase-activating 100.0
KOG0702524 consensus Predicted GTPase-activating protein [Sig 100.0
KOG0703287 consensus Predicted GTPase-activating protein [Sig 100.0
PF01412116 ArfGap: Putative GTPase activating protein for Arf 100.0
smart00105112 ArfGap Putative GTP-ase activating proteins for th 100.0
COG5347319 GTPase-activating protein that regulates ARFs (ADP 99.96
KOG0704386 consensus ADP-ribosylation factor GTPase activator 99.95
PLN03114395 ADP-ribosylation factor GTPase-activating protein 99.94
KOG0706454 consensus Predicted GTPase-activating protein [Sig 99.91
KOG0705749 consensus GTPase-activating protein Centaurin gamm 99.89
KOG0521785 consensus Putative GTPase activating proteins (GAP 99.79
KOG1117 1186 consensus Rho- and Arf-GTPase activating protein A 99.62
KOG0818669 consensus GTPase-activating proteins of the GIT fa 99.61
PLN03131705 hypothetical protein; Provisional 97.1
KOG0702524 consensus Predicted GTPase-activating protein [Sig 96.61
KOG0521785 consensus Putative GTPase activating proteins (GAP 89.75
>PLN03131 hypothetical protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.8e-188  Score=1527.84  Aligned_cols=653  Identities=62%  Similarity=1.013  Sum_probs=628.5

Q ss_pred             CCchhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCCCceeecccCCCCHHHHHHHHhcC
Q 005699            1 MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGG   80 (682)
Q Consensus         1 M~srk~~Er~ekiLr~Llk~PgNk~CaDCGa~~P~WaSvnfGVFVCi~CSGIHR~LGhrVKSltLD~Wt~eEV~~Lq~gG   80 (682)
                      |++||++||++++|++|+++|+|++|||||+++|+|||+|||||||++|+||||+||||||||+||+|+++||++|+.+|
T Consensus         1 m~SkkqqErnekiLreLlk~PgNk~CADCga~~P~WASiNlGIFICi~CSGIHRsLghRVKSVTLD~WtdeEV~~Mk~gG   80 (705)
T PLN03131          1 MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIHREFTHRVKSVSMSKFTSQDVEALQNGG   80 (705)
T ss_pred             CcchHHHHHHHHHHHHHhhCcCCCccccCCCCCCCeeEeccceEEchhchhhhcccCcccccccCCCCCHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHhhcCccccCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCCCCCcCCCCCCcccccccCCCCCCCCCCCcc
Q 005699           81 NQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGKTPDKPPKDTQGLGSHLDESRRASSYHSYSQSPPYD  160 (682)
Q Consensus        81 N~raN~iyea~~d~~~~~~P~~sd~~~rreFIraKY~eKrF~~~k~~D~Pp~~~q~l~~~~~e~rr~ss~~s~sqsPp~d  160 (682)
                      |++||+|||++|+..+.++|...+.+++|+|||+||++|||+.....|+|+++.+.++.++.++||.++||+++|+|||+
T Consensus        81 N~~AN~iyeanwd~~r~~lP~~sd~ekrr~FIR~KYVeKRFa~~~s~d~pprd~q~~r~~e~e~rr~~syh~~SqSPpY~  160 (705)
T PLN03131         81 NQRAREIYLKDWDQQRQRLPDNSKVDKIREFIKDIYVDKKYAGGKTHDKPPRDLQRIRSHEDETRRACSYHSYSQSPPYD  160 (705)
T ss_pred             cHHHHHHHHhhcccccCCCCCCccHHHHHHHHHHHHhhhhhhcCCCCCCCchhhhhhhcccccccccccccCCCcCCCcc
Confidence            99999999999998877888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhccccccccccCCCCCCCCCCCCCCCCcccCCCCCchhhhhcccccCCCCcccccccccCCCCCCCCCCCCCCcc
Q 005699          161 YQYEDRRYGKLGAVLTRKPGSDRGHYVGKISSLVHSPGRMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPNFQ  240 (682)
Q Consensus       161 ~~yedrr~~k~~~~l~Rkpgsd~~~~~Gk~ss~~~sP~r~s~~~~~Dr~a~~~s~~r~sd~s~s~~g~~~k~~~~sp~~~  240 (682)
                      |+||||||||+...++|+||+|+++|.|||++|++||+|+.++|+||||+||++++|++||+++++|+++|.+.+|||++
T Consensus       161 ~~yedrRygk~~~~~~R~pg~d~~~~~~k~~~~~~SP~r~~d~~~eDrf~ne~~~~r~~d~s~ss~~~~~r~~~~SP~~~  240 (705)
T PLN03131        161 FQYEDRRYGKQAGILTRKPGSDRGLNVGKMASFICSPTRLNDRMFEDRFANEGSVSGVSDYSVSSGGDLVRSGAESPNFQ  240 (705)
T ss_pred             cccccccccccccccccCCccccccccccccccccCchhhhhhhhhcccccCCCCcccccccccccccccccCCCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCccccccccccccccc-----------cCCCCCCCCccccccCCccccCCCccccccccCCCCccCCCCCCc
Q 005699          241 KDAGFNSPPVQLSRDVSSLKANFK-----------RDVDGIPHPKRTTSLGSMGSFDSNSVSLKSCNSGGLTDVSEHDDQ  309 (682)
Q Consensus       241 K~~~~ssp~v~~~~~~~~~~~~~~-----------~~~~~~~~~qrt~ss~s~~s~~~~~~~~k~~~s~sl~d~~~~~~~  309 (682)
                      |++. +||||+++|+|||+.++..           ++++|++++|||+|+|||||+||+++++|++||+|||||.+|+++
T Consensus       241 k~~~-~Sp~v~p~r~ilg~n~~~~~v~~~s~~~~~~~~~~~~~~Qrt~Ssgs~gS~dg~s~s~Ks~~s~sL~D~~~e~~~  319 (705)
T PLN03131        241 KDIA-FSPPIQPPKDILGEDVQQRRIDLFSAALCKQGAEGCPHIQRSASLGSIGSFDSLSVSIKSFNSGSLADIVAEAEQ  319 (705)
T ss_pred             cccC-CCCCcccchhhccccccccccCCCcccccccccccccccccccccCcccccCCCccceeecccccccccccCccc
Confidence            9976 5789988999999765544           668999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCcccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccccCCCCCCccc-------------------------
Q 005699          310 AAGAPLDKISTFPQSHGPVNYGGLDLFEAPVVPETVPSTAPPIDLFQLPETSAAS-------------------------  364 (682)
Q Consensus       310 ~~~~~q~~~~~~p~~~~~~~~~~~dl~~~~~~~~~~~~~~~~idlfq~p~~~~~~-------------------------  364 (682)
                      +++++|.|+..+++.++.+.++++|+|++||+|++++++|+||||||+|+||.|+                         
T Consensus       320 ~~~~~q~k~~~~~~~~~~~~~~s~d~f~~~v~p~~~~~~a~pIDLFqlp~ts~a~~vdlf~~s~l~~~p~~n~~q~~qts  399 (705)
T PLN03131        320 AAGNHQDKMPAFPRMAGSGSHASLDHFKAPVAPEAAAPMAPPIDLFQLPATSPAPPVDLFEIPPLDPAPAINAYQPPQTS  399 (705)
T ss_pred             cccccccccCCccccccccccccccccccccccccccccCCchhhhhccCCCCCCcccccccCcccCCCccccCCCCccc
Confidence            9999999999999999999999999999999999999999999999999998754                         


Q ss_pred             ----------ccCCCcccccCCCCcCCCCCCCCCcccccCCCCCCCCCCccCcccccccCCCCCCcCCCCCCCCCCCCCC
Q 005699          365 ----------ITEQPSTAILNRNPQELSIPKNEGWATFDTPPSAASIPGTESLSHAMVPANEGSSVKSDQFPSSNTSMQW  434 (682)
Q Consensus       365 ----------~~~q~~~~~~~~~~~~~~~~~n~gWAtfD~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  434 (682)
                                |+||++++|||++++||++||||||||||+++.++|++|++||+..+||.....+.+||.+.++.++|||
T Consensus       400 ~p~~~dlfag~~qqq~~~s~~~~~~~~s~pknegwa~fd~~~p~~s~~~~~n~t~~~v~~~~~~~~~~d~v~~~~~~~q~  479 (705)
T PLN03131        400 LPSSIDLFGGITQQQSINSLDEKSPELSIPKNEGWATFDGIQPIASTPGNENLTPFSIGPSMAGSANFDQVPSLDKGMQW  479 (705)
T ss_pred             CCccccccccccccCccccccccCcccCCccccCcccccCCCcccccCCcccccccccccccccCcchhhcccccccccc
Confidence                      8999999999999999999999999999988877999999999999999877557899999999999999


Q ss_pred             CccCCCCCCCCCCCCCCCCCCcccccccccccccccccccCCCCCCCCccccccccccccccccccc--cccCCccCCCC
Q 005699          435 PAFQNSGANGPSPSSDPWSGNLHIVQAPAVATSAQVVSAASDPWPGNLHNGEAPAIATNMQSWNAFD--DFTSHLPSEGF  512 (682)
Q Consensus       435 ~~~~~s~~~~~~~~~~~~~~~~~~~qw~~~~~s~~~~~~~~~~w~~~~~~~~~~~~~~~~q~Wnaf~--d~~~~~~~~~~  512 (682)
                      |.|+.+.++...                          .+|++|.+++||||++.. ++.|+||||+  |+++++||+++
T Consensus       480 Pp~~~~~~~~s~--------------------------s~~~pW~~~~~~V~~~~~-~~~q~WnAF~~~ds~~~~~l~~~  532 (705)
T PLN03131        480 PPFQNSSDEESA--------------------------SGPAPWLGDLHNVEAPDN-TSAQNWNAFEFDDSVAGIPLEGI  532 (705)
T ss_pred             CCCccccccccc--------------------------ccCCcccccchhcccCCc-cCccccccccccccccccccccc
Confidence            999988877644                          356899999999999986 9999999999  99999999999


Q ss_pred             CCCCCCcccCCCCCCCCccchhh-cccccCCCCCCcccCCCC--CCCCCCCCCCccCCCCCCCCCCcccccccccCCCCC
Q 005699          513 KPNSEPHVDAYMPSPTPDQYLAI-VSQETNDDGNPRVASHDG--PPNMTVPSQADMGPSYNPSMFPLMGQMRTHATEHKS  589 (682)
Q Consensus       513 ~~~~~~~~~~~~~~~t~~~~~~s-~~qe~~~d~~~~~ap~~~--~~~~~~p~~~~~~psy~~~~~~~~g~~~~~~~~~ks  589 (682)
                      ++++++||.++.++++ +||+++ ++||+++||++|+||+++  +++|++|+.+++||+|.++++|+||+|++|.+++||
T Consensus       533 ~~~s~~q~~~~~~~t~-~q~~~~~~~~d~~~d~~~r~~p~~~~~~~g~~~~~~~~~~ps~~~~~~~~~~~~~s~~~~~ks  611 (705)
T PLN03131        533 KQSSEPQTAANMPPTA-DQLIGCKALEDFNKDGIKRTAPHGQGELPGLDEPSDILAEPSYTPPAHPIMEHAQSHANDHKS  611 (705)
T ss_pred             cccccccccccCCCCc-ccccccccccccccccccccCCCCCcCCCCCCCCCccccCCCCCccccccccccccccCccCC
Confidence            9999999987777555 599999 999999999999999999  999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcccccccccchhhHHhhCCCCCCCCCcCC-CCCCCCCCCCCCCccccccccCCccccccCCCCcccCCCC
Q 005699          590 TNPFDFPCDSDLEQNNMFLDMSSLQAALPNAELPSPFLG-GATQSWFPQNPVSPFVQAAAQGGLAYMSGQSPSAQLANIP  668 (682)
Q Consensus       590 ~NPFDlp~dsd~e~~~mF~DmsSLQaaLP~~~~p~~f~g-g~te~W~pqns~~~yips~~qGgl~yma~Q~p~~~~~n~~  668 (682)
                      +||||||||+|+|++|||||||||||||||+|||++||| ||||+|||||++|+|||+|+||||+|||||+|++||.|.+
T Consensus       612 ~npfdl~~dsd~~~~~mf~d~sslq~~lp~~~~~~~f~g~~~tepw~~~~~~~~yip~~pqggl~y~agq~~~~~~~~~~  691 (705)
T PLN03131        612 INPFDLPYDSDLEPGNMFLDMSSLEAALPDAHLPSAFLGSGMTEPWFPQDLAMTYIPAAPQGGLAYMAGQAPNPQLGNVQ  691 (705)
T ss_pred             CCCcCCccccccCcccceeehHHHHhhcCCCCCchhhhcCCCCCccccCCCcccccCCCCCCCchhhcccCCcchhhhhh
Confidence            999999999999999999999999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             CCCCcccCCCCCCC
Q 005699          669 TQEPVASVGGNPFA  682 (682)
Q Consensus       669 ~~~~~a~~~gNPFa  682 (682)
                      +++||||+||||||
T Consensus       692 ~~~~~af~~~npf~  705 (705)
T PLN03131        692 TQGPVAFVGGNPFA  705 (705)
T ss_pred             ccCccccCCCCCCC
Confidence            99999999999997

>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins [] Back     alignment and domain information
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] Back     alignment and domain information
>PLN03131 hypothetical protein; Provisional Back     alignment and domain information
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query682
2d9l_A134 Solution Structure Of The Arfgap Domain Of Human Ri 1e-18
2olm_A140 Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 4e-18
2iqj_A134 Crystal Structure Of The Gap Domain Of Smap1l (Loc6 1e-10
2crr_A141 Solution Structure Of Arfgap Domain From Human Smap 2e-10
2b0o_E301 Crystal Structure Of Uplc1 Gap Domain Length = 301 4e-08
3lvq_E497 The Crystal Structure Of Asap3 In Complex With Arf6 1e-07
3o47_A329 Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le 1e-07
3dwd_A147 Crystal Structure Of The Arfgap Domain Of Human Arf 1e-07
3fm8_C392 Crystal Structure Of Full Length Centaurin Alpha-1 1e-07
3feh_A386 Crystal Structure Of Full Length Centaurin Alpha-1 2e-07
2owa_A138 Crystal Structure Of Putative Gtpase Activating Pro 2e-07
3sub_A163 Crystal Structure Of The Catalytic Domain Of Plasmo 3e-07
1dcq_A278 Crystal Structure Of The Arf-Gap Domain And Ankyrin 4e-07
4f1p_A368 Crystal Structure Of Mutant S554d For Arfgap And An 2e-05
3jue_A368 Crystal Structure Of Arfgap And Ank Repeat Domain O 2e-05
3t9k_A390 Crystal Structure Of Acap1 C-portion Mutant S554d F 3e-05
2p57_A144 Gap Domain Of Znf289, An Id1-Regulated Zinc Finger 5e-04
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip Length = 134 Back     alignment and structure 
Iteration: 1

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 65/104 (62%), Gaps = 2/104 (1%)
Query: 20  LPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT--HRVKSVSMSKFTSQEVEALQ 77
           LP NR+C +C+  GP YV     +FVC +CSG  R     HRVKS+SM+ FT QE+E LQ
Sbjct: 17  LPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQ 76
Query: 78  NGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRY 121
             GN+  ++I+L  +D +   +PD  +  KV++F++  Y  +R+
Sbjct: 77  KHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRW 120
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 140 Back     alignment and structure
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134 Back     alignment and structure
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1 Length = 141 Back     alignment and structure
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301 Back     alignment and structure
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497 Back     alignment and structure
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 Back     alignment and structure
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147 Back     alignment and structure
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392 Back     alignment and structure
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386 Back     alignment and structure
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein For Adp Ribosylation Factor From Cryptosporidium Parvum (Cgd5_1040) Length = 138 Back     alignment and structure
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium Falciparum Arf Gtpase Activating Protein Length = 163 Back     alignment and structure
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278 Back     alignment and structure
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390 Back     alignment and structure
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein Length = 144 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query682
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 9e-52
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 4e-27
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 6e-27
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 1e-26
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 4e-26
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 7e-26
2owa_A138 Arfgap-like finger domain containing protein; zinc 3e-24
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 2e-23
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 6e-23
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 2e-22
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 8e-20
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 1e-19
3o47_A329 ADP-ribosylation factor GTPase-activating protein 1e-17
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 6e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140 Back     alignment and structure
 Score =  174 bits (443), Expect = 9e-52
 Identities = 52/139 (37%), Positives = 83/139 (59%), Gaps = 8/139 (5%)

Query: 3   SRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREF--THRV 60
            RK+EE++ K++R +  LP NR+C +C+  GP YV     +FVC +CSG  R     HRV
Sbjct: 5   KRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRV 64

Query: 61  KSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRR 120
           KS+SM+ FT QE+E LQ  GN+  ++I+L  +D +   +PD  +  KV++F++  Y  +R
Sbjct: 65  KSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKR 124

Query: 121 YAGGKTPDKPPKDTQGLGS 139
           +        PP+  + + S
Sbjct: 125 WY------VPPEQAKVVAS 137
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 Back     alignment and structure
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 Back     alignment and structure
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301 Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386 Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138 Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368 Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147 Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163 Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144 Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149 Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query682
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 100.0
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 100.0
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 100.0
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 99.98
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 99.97
2owa_A138 Arfgap-like finger domain containing protein; zinc 99.97
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 99.96
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 99.96
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 99.95
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 99.95
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 99.94
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 99.94
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 99.94
3o47_A329 ADP-ribosylation factor GTPase-activating protein 99.92
1u5k_A244 Hypothetical protein; OBD-fold, Zn-binding, recomb 84.72
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Back     alignment and structure
Probab=100.00  E-value=1.1e-38  Score=300.19  Aligned_cols=122  Identities=40%  Similarity=0.758  Sum_probs=115.2

Q ss_pred             chhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC--CceeecccCCCCHHHHHHHHhcC
Q 005699            3 SRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT--HRVKSVSMSKFTSQEVEALQNGG   80 (682)
Q Consensus         3 srk~~Er~ekiLr~Llk~PgNk~CaDCGa~~P~WaSvnfGVFVCi~CSGIHR~LG--hrVKSltLD~Wt~eEV~~Lq~gG   80 (682)
                      +|+++|+++++|++|++.|+|++|||||+++|+|||+|||||||++|+||||+||  |+||||+||+|++++|++|+.+|
T Consensus         5 ~~~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~s~VrSl~ld~w~~~~l~~m~~~G   84 (140)
T 2olm_A            5 KRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQKHG   84 (140)
T ss_dssp             HHHHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSCCCEEETTTCCCCHHHHHHHHHCH
T ss_pred             hHHHHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCcceeeecCCCCCCHHHHHHHHHhc
Confidence            4688999999999999999999999999999999999999999999999999999  69999999999999999999999


Q ss_pred             cHHHHHHHhhcCccccCCCCCCCchHHHHHHHHHHHHhccccCC
Q 005699           81 NQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGG  124 (682)
Q Consensus        81 N~raN~iyea~~d~~~~~~P~~sd~~~rreFIraKY~eKrF~~~  124 (682)
                      |.++|++||++++....++|+..+.+.+++||++||++|+|+..
T Consensus        85 N~~an~~~e~~~~~~~~~~P~~~d~~~~~~fIr~KYe~k~f~~~  128 (140)
T 2olm_A           85 NEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVP  128 (140)
T ss_dssp             HHHHHHHHTTTCCTTTSCCCCTTCHHHHHHHHHHHHTSCTTCCC
T ss_pred             cHHHHHHHHhhCCcccCCCCCCCCHHHHHHHHHHHHcCCeeeCC
Confidence            99999999999987666778777888899999999999999875
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Back     alignment and structure
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Back     alignment and structure
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 682
d1dcqa2122 g.45.1.1 (A:247-368) Pyk2-associated protein beta 6e-34
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122 Back     information, alignment and structure

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  123 bits (310), Expect = 6e-34
 Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 11  EKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSK 67
           ++II  + ++  N  C +C +  P ++ TN     C+ CSGIHRE      R++S+++  
Sbjct: 3   KEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDV 62

Query: 68  FTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPD-NSNVNKVRDFIKNVYVDRRYA 122
             + E+   +N GN    EI       +    P+  S++   +D+I   Y++RRYA
Sbjct: 63  LGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYA 118

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query682
d1dcqa2122 Pyk2-associated protein beta ARF-GAP domain {Mouse 100.0
d1u5ka2157 Recombinational repair protein RecO, C-terminal do 84.9
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.7e-37  Score=281.23  Aligned_cols=116  Identities=29%  Similarity=0.540  Sum_probs=106.6

Q ss_pred             HHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC---CceeecccCCCCHHHHHHHHhcCcHHHHH
Q 005699           10 NEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNGGNQRARE   86 (682)
Q Consensus        10 ~ekiLr~Llk~PgNk~CaDCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSltLD~Wt~eEV~~Lq~gGN~raN~   86 (682)
                      ++++|++|++.|+|++|||||+.+|+|||+|||||||++|||+||+||   |+|||++||+|+++||++|+.+||.++|+
T Consensus         2 t~~~l~~l~~~p~N~~CaDC~~~~p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld~w~~~~i~~~~~~GN~~~n~   81 (122)
T d1dcqa2           2 TKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNE   81 (122)
T ss_dssp             HHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHH
T ss_pred             hHHHHHHHHhCCCCCccCCCCCCCCCeEEecCCEEEchhhhHHHhcCCCCceEeeecccCCCCHHHHHHHHHHhHHHHHH
Confidence            689999999999999999999999999999999999999999999999   59999999999999999999999999999


Q ss_pred             HHhhcCccccCCCCC-CCchHHHHHHHHHHHHhccccCCC
Q 005699           87 IYLKDWDFQRQRLPD-NSNVNKVRDFIKNVYVDRRYAGGK  125 (682)
Q Consensus        87 iyea~~d~~~~~~P~-~sd~~~rreFIraKY~eKrF~~~k  125 (682)
                      +||++++.....+|. .++...+++||++||++|+|+.++
T Consensus        82 ~~ea~~~~~~~~kp~~~~~~~~r~~fI~~KY~~k~f~~k~  121 (122)
T d1dcqa2          82 IMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK  121 (122)
T ss_dssp             HHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred             HHHhhCCcccCcCCCCCccHHHHHHHHHHHHHhCcccccc
Confidence            999999765554454 455667889999999999999875
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure