Citrus Sinensis ID: 005702

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680--
MILGSLSFDDGNTVKDNLLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAG
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccccccccHHHccccHHHHHHHcccccHHHHcccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHccHHHHHHHHHHHHHHcccccHHHHHHccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccHHHHHHcc
ccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccHHHccccHHHHHHHHHHHHHHccHHHHHHHHcccHHHHHccccccHHHHccHHHHHHcHHHHHHHHHHHHHHHcccccccccccccHHHHcccccccccccccccHcHEEEEHHHHcccccccccccHHHHHHcHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccHHccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHEEHHHHHHEcccHHHHHHHcccccccHHHHHHHHHHHHccccccccccHHHHEHcc
milgslsfddgntvkdnllrfktgkrgLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVletgpgwrlvsphfsvlldkaifpalvlnekdisEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGvisvskgppmgtpsncssvsskrkkgekskrnsmrstmgellvlpflsrfpipcdanashsriqKDYFGVLMAYGGLQEFLREQKSEFTANlvrsrvlplysvsVCLPYLVASANWILGELasclpedisADVYSSLLKALQMldkgdtscypvrASAAGAIVGLlendymppewypLLQVIVGRIGYEDEENSILFELLSSVVGaanenvadhIPYIVSSLVAAISkhmhpssepwpQVVERGFAALALMAQSWENFLREEVEldqssgkweSGQAAIAKAFSALLQQAWLThiqplecevsappsciddssMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWhaweetedlsvFDCIKEIVNLHSKYELKNFIvrqmppppappvppqsiIEGIGAFLSEAILqypsatwracscvhtllhvpkysfetegvkqSLTISFSCAAFSRfraiqskpsslwkPVVLAISSCYLCYPAVVEGILkkdedggfaLWGSALAFLcsssleprlsLESEIKLAG
milgslsfddgntvkdnllrfktgkrglLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVisvskgppmgtpsncssvsskrkkgekskrnsmrstmGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSssleprlsleseiklag
MILGSLSFDDGNTVKDNLLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCssvsskrkkgekskRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMppppappvppQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCsssleprlsleseIKLAG
***********NTVKDNLLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISV***********************************ELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMH***EPWPQVVERGFAALALMAQSWENFLREEVELD***GKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIV***************IIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCS*****************
MILGSLSF*****VKDNLLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHM************RGFAALALMAQSWENF*************WESGQAAIAKAFSALLQQAWLTHIQPL*C*VSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIV****************IEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLC*************IKLA*
MILGSLSFDDGNTVKDNLLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPP*************************RSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAIS*********WPQVVERGFAALALMAQSWENFLREEV***********GQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAG
*ILGSLSFDDGNTVKDNLLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPM***********************MRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLR*****DQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAP*VPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSS***************
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MILGSLSFDDGNTVKDNLLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query682 2.2.26 [Sep-21-2011]
Q9EPL8 1038 Importin-7 OS=Mus musculu yes no 0.366 0.240 0.230 2e-07
O95373 1038 Importin-7 OS=Homo sapien yes no 0.397 0.261 0.220 3e-07
O15397 1037 Importin-8 OS=Homo sapien no no 0.420 0.276 0.206 9e-06
Q7TMY7 1010 Importin-8 OS=Mus musculu no no 0.366 0.247 0.210 0.0006
>sp|Q9EPL8|IPO7_MOUSE Importin-7 OS=Mus musculus GN=Ipo7 PE=1 SV=2 Back     alignment and function desciption
 Score = 58.2 bits (139), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 126/312 (40%), Gaps = 62/312 (19%)

Query: 68  FLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEY 127
           ++  R++    + I+  +     W+ + PH   ++   IFP +   + D   W+ED  EY
Sbjct: 316 YMAPRVLQQTLNYINQGVSHALTWKNLKPHIQGIIQDVIFPLMCYTDADEELWQEDPYEY 375

Query: 128 IRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKS 187
           IR  F           ED  +   +A  LL                  +  SKRK+    
Sbjct: 376 IRMKFDV--------FEDFISPTTAAQTLL-----------------FTACSKRKE---- 406

Query: 188 KRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQK--SE 245
               ++ TMG          + I  + NA   +  KD  G L   G L E L ++K   +
Sbjct: 407 ---VLQKTMGFC--------YQILTEPNADPRK--KD--GALHMIGSLAEILLKKKIYKD 451

Query: 246 FTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKG 305
               ++++ V PL+S    L Y+ A A W+L         ++      +L  AL++  + 
Sbjct: 452 QMEYMLQNHVFPLFSSE--LGYMRARACWVLHYFC-----EVKFKSDQNLQTALELTRRC 504

Query: 306 --DTSCYPVRASAAGAIVGLLEN-----DYMPPEWYPLLQVIVGRIGYEDEENSILFELL 358
             D    PV+  AA A+  L+ N     +Y+ P   P++Q ++  I   + EN  L  ++
Sbjct: 505 LIDDREMPVKVEAAIALQVLISNQEKAKEYITPFIRPVMQALLHII--RETENDDLTNVI 562

Query: 359 SSVVGAANENVA 370
             ++   +E V 
Sbjct: 563 QKMICEYSEEVT 574
Functions in nuclear protein import, either by acting as autonomous nuclear transport receptor or as an adapter-like protein in association with the importin-beta subunit KPNB1. Acting autonomously is thought to serve itself as receptor for nuclear localization signals (NLS) and to promote translocation of import substrates through the nuclear pore complex (NPC) by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. Mediates autonomously the nuclear import of ribosomal proteins RPL23A, RPS7 and RPL5. Binds to a beta-like import receptor binding (BIB) domain of RPL23A. In association with KPNB1 mediates the nuclear import of H1 histone and the Ran-binding site of IPO7 is not required but synergizes with that of KPNB1 in importin/substrate complex dissociation (By similarity). In vitro, mediates nuclear import of H2A, H2B, H3 and H4 histones.
Mus musculus (taxid: 10090)
>sp|O95373|IPO7_HUMAN Importin-7 OS=Homo sapiens GN=IPO7 PE=1 SV=1 Back     alignment and function description
>sp|O15397|IPO8_HUMAN Importin-8 OS=Homo sapiens GN=IPO8 PE=1 SV=2 Back     alignment and function description
>sp|Q7TMY7|IPO8_MOUSE Importin-8 OS=Mus musculus GN=Ipo8 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query682
255556524 965 protein transporter, putative [Ricinus c 0.997 0.704 0.688 0.0
356565000 1104 PREDICTED: uncharacterized protein LOC10 0.989 0.611 0.659 0.0
449441658 1085 PREDICTED: uncharacterized protein LOC10 0.989 0.622 0.638 0.0
356521695 1094 PREDICTED: uncharacterized protein LOC10 0.989 0.617 0.651 0.0
297834642 1091 protein transporter [Arabidopsis lyrata 0.983 0.615 0.597 0.0
145338625 1090 armadillo/beta-catenin-like repeats-cont 0.983 0.615 0.590 0.0
110738031 1090 hypothetical protein [Arabidopsis thalia 0.983 0.615 0.590 0.0
334185410 1093 armadillo/beta-catenin-like repeats-cont 0.982 0.612 0.589 0.0
357155759 1092 PREDICTED: uncharacterized protein LOC10 0.970 0.606 0.538 0.0
326530652 1098 predicted protein [Hordeum vulgare subsp 0.956 0.593 0.513 0.0
>gi|255556524|ref|XP_002519296.1| protein transporter, putative [Ricinus communis] gi|223541611|gb|EEF43160.1| protein transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  916 bits (2368), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/719 (68%), Positives = 567/719 (78%), Gaps = 39/719 (5%)

Query: 2   ILGSLSFDDGNTVKD-NLLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYS 60
           +L SLSFD G T +D + LR KTGKR LLIFSALVTRHRK+SDKLMPDI+N  L+I + S
Sbjct: 247 LLDSLSFDRGVTSEDGHRLRLKTGKRSLLIFSALVTRHRKYSDKLMPDILNCALRIARNS 306

Query: 61  ANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEW 120
             IS+L+FL ERIISLAFDVISH+LETGPGWRLVSP+FS LLD AIFP LVLNEKDISEW
Sbjct: 307 TYISRLEFLSERIISLAFDVISHILETGPGWRLVSPYFSSLLDSAIFPVLVLNEKDISEW 366

Query: 121 EEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSK 180
           E DA+EYIRKN PSELEEISGWREDLFTARKSAINLLGVIS+SKGPP  T  N S  SSK
Sbjct: 367 EGDAEEYIRKNLPSELEEISGWREDLFTARKSAINLLGVISMSKGPPTATSHNGSVASSK 426

Query: 181 RKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLR 240
           RKKGEK+KR++ R +MG+LLVLP+LS+FP+P DA+A  +RI  DYFGVLMAYGGLQ+FL+
Sbjct: 427 RKKGEKNKRDNQRCSMGDLLVLPYLSKFPVPSDADALKARIINDYFGVLMAYGGLQDFLK 486

Query: 241 EQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300
           EQK  +   LV +R+LPLY+VS+  PYLVA+ANW+LGELASCL E++ ADVYSSLLKAL 
Sbjct: 487 EQKPGYVTLLVCNRLLPLYTVSLTSPYLVAAANWVLGELASCLSEEMKADVYSSLLKALA 546

Query: 301 MLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSS 360
           M D  DTSCYPVR SAAGAIV LLEN+Y+PPEW PLLQV++ RI  E+EE S+LF+LLS+
Sbjct: 547 MPDNEDTSCYPVRVSAAGAIVELLENEYLPPEWLPLLQVVISRIDIEEEETSVLFQLLST 606

Query: 361 VVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREE 420
           VV A +EN+ADHIPYIVSSLV  + K MHP  E WPQVVERGFA LA+MAQSWENFL EE
Sbjct: 607 VVEAGDENIADHIPYIVSSLVGVLLKFMHPGLESWPQVVERGFATLAVMAQSWENFLPEE 666

Query: 421 VELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPL------------------------ 456
           +E  +SS K  SG+A I KA SALLQ  WL  + P                         
Sbjct: 667 IEQIESSEKLASGRAVIGKALSALLQWTWLVPLHPAVSPTSFPCTRKELHLKTLCNNLFH 726

Query: 457 -------------ECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLI 503
                        E ++S  P+CIDDSS LL SI+LSV+  +VI +LKLSELLLVWADLI
Sbjct: 727 KTYSCLEFDKEDREGQISPTPTCIDDSSTLLHSIMLSVTGSDVILQLKLSELLLVWADLI 786

Query: 504 GDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLS 563
            DWHAWEE+EDLS+FDCIKE+VNL+SKY LKNFI RQMP PP+PPVPPQSIIEGIGAF+S
Sbjct: 787 ADWHAWEESEDLSIFDCIKEVVNLNSKYGLKNFITRQMPSPPSPPVPPQSIIEGIGAFVS 846

Query: 564 EAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLW 623
           EAILQYPSATWRACSCVH LLHVP Y  ETE VKQSLTISF  AAFS F+ IQSKP SLW
Sbjct: 847 EAILQYPSATWRACSCVHMLLHVPCYPTETE-VKQSLTISFCQAAFSHFKEIQSKPCSLW 905

Query: 624 KPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAG 682
           KP++L ISSCYL  P +VEGIL+KD  GGFA+WGSALA +C+ S E  L  +SEIKLAG
Sbjct: 906 KPLLLVISSCYLSCPDIVEGILEKDVKGGFAIWGSALASVCTGSSERGLVEKSEIKLAG 964

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356565000|ref|XP_003550733.1| PREDICTED: uncharacterized protein LOC100782006 [Glycine max] Back     alignment and taxonomy information
>gi|449441658|ref|XP_004138599.1| PREDICTED: uncharacterized protein LOC101205180 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356521695|ref|XP_003529487.1| PREDICTED: uncharacterized protein LOC100783023 [Glycine max] Back     alignment and taxonomy information
>gi|297834642|ref|XP_002885203.1| protein transporter [Arabidopsis lyrata subsp. lyrata] gi|297331043|gb|EFH61462.1| protein transporter [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|145338625|ref|NP_188360.3| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana] gi|332642419|gb|AEE75940.1| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|110738031|dbj|BAF00950.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334185410|ref|NP_001189916.1| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana] gi|332642420|gb|AEE75941.1| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357155759|ref|XP_003577228.1| PREDICTED: uncharacterized protein LOC100846341 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|326530652|dbj|BAK01124.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query682
TAIR|locus:2077715 1030 AT3G59020 "AT3G59020" [Arabido 0.131 0.087 0.275 2e-07
UNIPROTKB|E2R703 1036 IPO8 "Uncharacterized protein" 0.143 0.094 0.23 1.1e-05
UNIPROTKB|O15397 1037 IPO8 "Importin-8" [Homo sapien 0.143 0.094 0.23 1.4e-05
UNIPROTKB|F1SGB6900 IPO8 "Uncharacterized protein" 0.143 0.108 0.23 2.1e-05
UNIPROTKB|E1B8Q9 1039 IPO8 "Uncharacterized protein" 0.143 0.094 0.23 2.9e-05
CGD|CAL00023271002 orf19.5834 [Candida albicans ( 0.139 0.094 0.285 0.00018
TAIR|locus:2065939 1040 SAD2 "AT2G31660" [Arabidopsis 0.131 0.086 0.285 0.00032
MGI|MGI:24446111010 Ipo8 "importin 8" [Mus musculu 0.143 0.097 0.23 0.00035
SGD|S000002803944 SXM1 "Nuclear transport factor 0.058 0.042 0.4 0.00083
TAIR|locus:2077715 AT3G59020 "AT3G59020" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 128 (50.1 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
 Identities = 27/98 (27%), Positives = 54/98 (55%)

Query:    68 FLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEY 127
             +L +R+I+L    +S+ +     + L+ PH + LL + +FP +  N+ D   W+ED  EY
Sbjct:   313 YLPDRVINLILQYLSNSISKSSMYNLLQPHLNTLLFEIVFPLMCFNDNDQMLWDEDPHEY 372

Query:   128 IRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKG 165
             +RK +     +I    EDL++ R ++++ +  +   +G
Sbjct:   373 VRKGY-----DII---EDLYSPRTASMDFVTELVRKRG 402
GO:0000059 "protein import into nucleus, docking" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;ISS
GO:0005643 "nuclear pore" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISS
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0008565 "protein transporter activity" evidence=IEA;ISS
GO:0005829 "cytosol" evidence=IDA
UNIPROTKB|E2R703 IPO8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O15397 IPO8 "Importin-8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SGB6 IPO8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1B8Q9 IPO8 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
CGD|CAL0002327 orf19.5834 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
TAIR|locus:2065939 SAD2 "AT2G31660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:2444611 Ipo8 "importin 8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
SGD|S000002803 SXM1 "Nuclear transport factor (karyopherin) involved in protein transport" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
scaffold_302041.1
annotation not avaliable (1091 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query682
COG5656970 COG5656, SXM1, Importin, protein involved in nucle 2e-08
>gnl|CDD|227943 COG5656, SXM1, Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 64/332 (19%), Positives = 118/332 (35%), Gaps = 62/332 (18%)

Query: 91  WRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTAR 150
           WRL+ PH   ++   IFP L L+E++   +E D DEYIR+ +        G   DL    
Sbjct: 336 WRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDN---GLSPDLAALF 392

Query: 151 KSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPI 210
                   +IS S                  K+ E++ +           +L FL     
Sbjct: 393 ------FLIISKS------------------KRKEETFQG----------ILSFLLSILG 418

Query: 211 PCDANASHSRIQKDYFGVLMAYGGLQEFLREQK------SEFTANLVRSRVLPLYSVSVC 264
              A  S+    +   G L     ++ F+ +          F  N     V+P +  +  
Sbjct: 419 QSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNH----VIPAFRSNYG 474

Query: 265 LPYLVASANWILGELASCLPE-DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 323
             +L + A   +  +     +  I  + Y +    L+       +  PV   AA A+   
Sbjct: 475 --FLKSRACEFISTIEEDFKDNGILLEAYENTHNCLK------NNHLPVMIEAALALQFF 526

Query: 324 LENDYMPPEWYPLLQVIVGRIGY--EDEENSILFELLSSVVGAANENVADHIPYIVSSLV 381
           + N+    ++   +   + ++       E   L  ++ S V   +E ++   P +  SLV
Sbjct: 527 IFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLV 586

Query: 382 AAISK----HMHPSSEPWPQVVERGFAALALM 409
               K     +  SS+    V ++  AA  ++
Sbjct: 587 RQFLKIAQSLLENSSDTSSVVDDKQMAASGIL 618

Length = 970

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 682
KOG1991 1010 consensus Nuclear transport receptor RANBP7/RANBP8 100.0
COG5656 970 SXM1 Importin, protein involved in nuclear import 100.0
KOG1992 960 consensus Nuclear export receptor CSE1/CAS (import 100.0
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 100.0
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 100.0
KOG1993 978 consensus Nuclear transport receptor KAP120 (impor 99.84
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.72
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 99.69
COG5657947 CSE1 CAS/CSE protein involved in chromosome segreg 99.64
PF03378 435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 99.62
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 99.0
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.91
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 98.84
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 98.44
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 98.37
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 97.85
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 97.75
KOG1824 1233 consensus TATA-binding protein-interacting protein 97.07
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 97.07
KOG1824 1233 consensus TATA-binding protein-interacting protein 97.04
KOG1242569 consensus Protein containing adaptin N-terminal re 97.04
PF08167165 RIX1: rRNA processing/ribosome biogenesis 96.47
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 96.39
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.26
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.08
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 96.03
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 95.99
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 95.93
KOG2081559 consensus Nuclear transport regulator [Intracellul 95.69
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 95.61
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 95.6
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 95.31
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 95.23
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 95.19
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 95.13
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 95.07
KOG12481176 consensus Uncharacterized conserved protein [Funct 95.06
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 95.0
PTZ00429 746 beta-adaptin; Provisional 94.87
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 94.69
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 94.05
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 93.63
PF1036392 DUF2435: Protein of unknown function (DUF2435) 93.6
KOG2021980 consensus Nuclear mRNA export factor receptor LOS1 93.59
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 93.41
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 93.23
COG5096 757 Vesicle coat complex, various subunits [Intracellu 93.14
KOG2021980 consensus Nuclear mRNA export factor receptor LOS1 93.09
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 92.73
PTZ00429 746 beta-adaptin; Provisional 92.03
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 92.03
KOG1242569 consensus Protein containing adaptin N-terminal re 91.74
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 91.65
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 91.51
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 91.05
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 90.98
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 90.78
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 89.94
PRK09687280 putative lyase; Provisional 89.41
KOG0212 675 consensus Uncharacterized conserved protein [Funct 89.34
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 89.0
PRK09687280 putative lyase; Provisional 88.3
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 87.62
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 87.6
PF14500262 MMS19_N: Dos2-interacting transcription regulator 87.11
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 87.01
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 86.4
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 86.26
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 84.83
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 84.62
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 84.36
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 81.24
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 81.23
PF04078262 Rcd1: Cell differentiation family, Rcd1-like ; Int 80.87
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-100  Score=859.27  Aligned_cols=534  Identities=21%  Similarity=0.327  Sum_probs=484.2

Q ss_pred             CCcc--chhhHHHHHHHHHHHHHHHHHhhh--------------hHhhhHHHHHHHHHHHHHhccccccCcccCHHHHHH
Q 005702           13 TVKD--NLLRFKTGKRGLLIFSALVTRHRK--------------FSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISL   76 (682)
Q Consensus        13 ~~~d--~~~~~K~kKw~~~~l~~l~~Ry~~--------------~~~~f~p~il~~~l~~l~~~~~~~~~~~lsd~~i~~   76 (682)
                      ||+|  .+|||||||||++||||+|+||++              |..+|+|.|++++++++.+  |.. +.|+++|++++
T Consensus       247 d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~--~~~-~~yls~rvl~~  323 (1010)
T KOG1991|consen  247 DPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQ--WRQ-QLYLSDRVLYY  323 (1010)
T ss_pred             ChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHh-cccCCHHHHHH
Confidence            4555  889999999999999999999996              4678999999999999999  766 99999999999


Q ss_pred             HHHHHHHHhccCcccccccccHHHHHHHHhhccccCChhhhhhhhhCHHHHHHhcCCCchhhhccccccccchhHHHHHH
Q 005702           77 AFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINL  156 (682)
Q Consensus        77 ~~~fl~~~v~~~~~~~ll~p~l~~Li~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~~~~ed~~S~R~aA~~l  156 (682)
                      +++|+++|++++.+|++++||+..|++++|||.||+|++|+|+||+||+||||+++|.        ++|++|||.||.+|
T Consensus       324 ~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di--------~ed~~sp~~Aa~~~  395 (1010)
T KOG1991|consen  324 LLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDI--------FEDGYSPDTAALDF  395 (1010)
T ss_pred             HHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCch--------hcccCCCcHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999997        89999999999999


Q ss_pred             HHHHhhcCCCCCCCCCCCcccccccccccccccccccchhhHHH--HHHHHhcCCCCCCCCCccccchhhHHHHHHHHHH
Q 005702          157 LGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELL--VLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGG  234 (682)
Q Consensus       157 L~~L~~~~~~~~~~~~~~~~~~~kr~k~~~~k~~~~~~~l~~il--i~~~L~~~~~~~~~~~~~~~~~~~kegaL~~lg~  234 (682)
                      +.++                 ++||||+          ++++++  +.++|++|...+.    ..+++|+|||||+++|+
T Consensus       396 l~~~-----------------~~KR~ke----------~l~k~l~F~~~Il~~~~~~~~----~~~~~rqkdGAL~~vgs  444 (1010)
T KOG1991|consen  396 LTTL-----------------VSKRGKE----------TLPKILSFIVDILTRYKEASP----PNKNPRQKDGALRMVGS  444 (1010)
T ss_pred             HHHH-----------------HHhcchh----------hhhhHHHHHHHHHHhhcccCC----CccChhhhhhHHHHHHH
Confidence            9995                 8999887          455554  8999999987754    35689999999999999


Q ss_pred             HHHHHhhhc--chhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhc-C-ChhhHHHHHHHHHHhhc-cCCCCCCCC
Q 005702          235 LQEFLREQK--SEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC-L-PEDISADVYSSLLKALQ-MLDKGDTSC  309 (682)
Q Consensus       235 la~~l~~~~--~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~-l-~~~~l~~il~~ll~~L~-d~~~~~~~~  309 (682)
                      +++.+.++.  ++++|.|+.+||+|+|+  ||.+||||||||++++|++. + ++.++.++++++.+||. |++      
T Consensus       445 l~~~L~K~s~~~~~mE~flv~hVfP~f~--s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~------  516 (1010)
T KOG1991|consen  445 LASILLKKSPYKSQMEYFLVNHVFPEFQ--SPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNE------  516 (1010)
T ss_pred             HHHHHccCCchHHHHHHHHHHHhhHhhc--CchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCc------
Confidence            999998753  46799999999999999  89999999999999999986 6 78999999999999999 555      


Q ss_pred             cchhHHHHHHHHHhhhcC-----CCCCChHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHH
Q 005702          310 YPVRASAAGAIVGLLEND-----YMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAI  384 (682)
Q Consensus       310 ~pVrv~Aa~AL~~~l~~~-----~l~p~l~~llq~Ll~~L~~e~~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f  384 (682)
                      +|||++||.||+.|+.++     +++|+++|+||+||+ |+|+. |+|.|+.+|+++|+.|+|+++|||++||++|+++|
T Consensus       517 lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~-L~ne~-End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F  594 (1010)
T KOG1991|consen  517 LPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLK-LSNEV-ENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETF  594 (1010)
T ss_pred             CchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHH-HHHhc-chhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Confidence            999999999999999973     699999999999999 99998 99999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCChhhHHhHHHHHHHHHHhhhhhchhhhhhhccCCccchhHhH---HHHHHHHHHHhhhhhcccccccccC
Q 005702          385 SKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAA---IAKAFSALLQQAWLTHIQPLECEVS  461 (682)
Q Consensus       385 ~k~~~~~~~~~~~~~~~~~~aLa~~~~~~~~~~~~~~~~~~~~d~~~~~~~a---~L~ti~tllq~~~~~~~~e~~~s~~  461 (682)
                      +|++....+                      .++          ..++|+++   +|+||.|+|            .|++
T Consensus       595 ~k~l~~~~~----------------------~~~----------~~ddk~iaA~GiL~Ti~Til------------~s~e  630 (1010)
T KOG1991|consen  595 LKVLQTSED----------------------EDE----------SDDDKAIAASGILRTISTIL------------LSLE  630 (1010)
T ss_pred             HHHHhccCC----------------------CCc----------cchHHHHHHHHHHHHHHHHH------------HHHh
Confidence            999865221                      111          11566665   999999999            9999


Q ss_pred             CCcchHHhHHHHHHHHHhhcCchhHHHhhhHHHHHHHHHHHH------------hcccchhhhh---hchHHHHHHHHHh
Q 005702          462 APPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLI------------GDWHAWEETE---DLSVFDCIKEIVN  526 (682)
Q Consensus       462 ~~~~~~~~le~~l~~vi~~i~~~~~~l~~~~~~~l~e~~~li------------~~W~~~e~~~---~~~~~dyl~evi~  526 (682)
                      +.|+++.+++..+.|+++++      +++++.|||+|+++++            .||++|+.+.   ..+|+|||.+|++
T Consensus       631 ~~p~vl~~le~~~l~vi~~i------L~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~  704 (1010)
T KOG1991|consen  631 NHPEVLKQLEPIVLPVIGFI------LKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMP  704 (1010)
T ss_pred             ccHHHHHHHHHHHHHHHHHH------HHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            99999999999999999999      9999999999999999            7999999997   6789999999999


Q ss_pred             hhccccccccccccCCCCCCCCCChhHHHHHHHHHHhhhhhcCchhHHHHhHhHHHHhhcccccccccccchhhHHHHHH
Q 005702          527 LHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSC  606 (682)
Q Consensus       527 l~~~~~L~Nfi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ac~~~~~ll~~~~~~~~~~~~~~~~~~~f~~  606 (682)
                           .|+|||+||++++..+|.|.+.+++|+.+.+++. +...+.+..||++.+.++    +++++  ..++++|.|++
T Consensus       705 -----~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e-~~~D~d~~~a~kLle~ii----L~~kg--~~dq~iplf~~  772 (1010)
T KOG1991|consen  705 -----ALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSE-NGEDSDCESACKLLEVII----LNCKG--LLDQYIPLFLE  772 (1010)
T ss_pred             -----HHhhheeeCchhhhccchHHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHHH----HHhcC--cHhhHhHHHHH
Confidence                 9999999999999999999999999999776643 334456677999999887    88874  77999999999


Q ss_pred             HHHhhhhhhcCCCCcchHhHHHHHHHhhccChHHHHHHHhhcCccc--HHHHHHHHH
Q 005702          607 AAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGG--FALWGSALA  661 (682)
Q Consensus       607 ~a~~~~~~~~~~~~~~~~~~~~vi~~~~~~~p~~~~~~L~~~~~~~--~~~w~~~~~  661 (682)
                      +|.+|+++. .+++.+.+.+++||+||+||||..|+|+|++.+.+.  |+.||+-+-
T Consensus       773 ~a~~~l~~~-~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~~~~  828 (1010)
T KOG1991|consen  773 LALSRLTRE-VETSELRVMLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQFIN  828 (1010)
T ss_pred             HHHHHHhcc-ccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHHHHH
Confidence            999999976 566788899999999999999999999999999965  999998653

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query682
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 2e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960 Back     alignment and structure
 Score = 82.7 bits (203), Expect = 2e-16
 Identities = 55/393 (13%), Positives = 120/393 (30%), Gaps = 76/393 (19%)

Query: 30  IFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGP 89
           +     TR+      ++ + +     ++   +N  K D L    +S +   ++ V     
Sbjct: 269 LVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDIL----VSKSLSFLTAVTRIPK 324

Query: 90  GWRLVS--PHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLF 147
            + + +     + + ++ I P + L E+D+  +E+D  EYIR++             D  
Sbjct: 325 YFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEG---------SDTD 375

Query: 148 TARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSR 207
           T R++  + L  +       +                                 L  +  
Sbjct: 376 TRRRACTDFLKELKEKNEVLVTNI-----------------------------FLAHMKG 406

Query: 208 FPIPCDANASHSRIQKD----YFGVLMAYGGLQEFLREQKS---EFTANLVRSRVLPLYS 260
           F     ++ S +   KD     F  L   G +        +          +     L S
Sbjct: 407 FVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTS 466

Query: 261 VSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAI 320
            ++    L   A   +    + L +    ++   L   LQ  +      Y V   AA  I
Sbjct: 467 NNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDE------YVVYTYAAITI 520

Query: 321 VGLLEN-------------DYMPPEWYPLLQVIVGRIGYEDE------ENSILFELLSSV 361
             +L               + +      LL+ ++  I           EN  L   +  V
Sbjct: 521 EKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRV 580

Query: 362 VGAANENVADHIPYIVSSLVAAISKHMHPSSEP 394
           +  + +++    P +++  +  ++      S P
Sbjct: 581 LQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNP 613
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query682
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 100.0
2x1g_F971 Cadmus; transport protein, developmental protein, 99.84
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.84
2x19_B963 Importin-13; nuclear transport, protein transport; 99.8
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 99.76
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.63
1qgr_A876 Protein (importin beta subunit); transport recepto 99.59
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 99.25
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.24
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.11
1qgr_A876 Protein (importin beta subunit); transport recepto 99.11
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 99.02
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 98.88
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 98.6
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 98.53
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 98.52
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.37
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 98.26
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.18
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.84
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 97.84
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 97.83
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 97.77
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.45
2x19_B963 Importin-13; nuclear transport, protein transport; 97.29
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 97.28
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 97.25
2x1g_F971 Cadmus; transport protein, developmental protein, 97.25
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 97.06
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 96.88
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 96.71
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 96.69
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 96.59
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 96.59
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 96.57
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 96.53
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 96.4
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 96.24
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 96.05
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 95.99
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 95.95
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 95.84
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 95.7
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 95.66
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 95.31
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 95.04
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 94.96
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 94.83
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 94.59
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 93.74
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 93.52
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 93.43
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 93.3
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 93.21
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 93.15
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 92.81
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 92.06
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 91.78
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 91.72
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 91.55
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 90.6
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 90.34
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 90.26
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 90.1
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 89.88
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 89.53
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 89.3
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 89.28
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 86.8
2db0_A253 253AA long hypothetical protein; heat repeats, hel 86.34
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 82.67
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 82.39
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 81.44
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 80.83
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
Probab=100.00  E-value=2.2e-46  Score=453.34  Aligned_cols=515  Identities=14%  Similarity=0.125  Sum_probs=391.5

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHhhhhHhhhHHHHHHHHHHHHHhccccccCcccCHHHHHHHHHHHHHHhccCccccccc
Q 005702           16 DNLLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVS   95 (682)
Q Consensus        16 d~~~~~K~kKw~~~~l~~l~~Ry~~~~~~f~p~il~~~l~~l~~~~~~~~~~~lsd~~i~~~~~fl~~~v~~~~~~~ll~   95 (682)
                      +..+|||+|||+++++++++.||.+.+.+|++.+++.+|+++..  +.  ..+.+++++.++++|+.++++.+..|++++
T Consensus       255 ~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~--~~--~~~~~~~~~~~al~fl~~~~~~~~~~~~~~  330 (960)
T 1wa5_C          255 HASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTS--IS--NQPKYDILVSKSLSFLTAVTRIPKYFEIFN  330 (960)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH--CC--SCTTSHHHHHHHHHHHHHHHTSHHHHGGGC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cC--CCcCcHHHHHHHHHHHHHHhCcHhHHHHHc
Confidence            36789999999999999999999999999999999999999986  22  346789999999999999999999999998


Q ss_pred             --ccHHHHHHHHhhccccCChhhhhhhhhCHHHHHHhcCCCchhhhccccccccchhHHHHHHHHHHhhcCCCCCCCCCC
Q 005702           96 --PHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSN  173 (682)
Q Consensus        96 --p~l~~Li~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~~~~ed~~S~R~aA~~lL~~L~~~~~~~~~~~~~  173 (682)
                        |++..|++.+|+|+|+++++|+++|++||+||||++.|         .+|.+|+|.+|.++|..|             
T Consensus       331 ~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e---------~~d~~s~R~aa~~~L~~l-------------  388 (960)
T 1wa5_C          331 NESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLE---------GSDTDTRRRACTDFLKEL-------------  388 (960)
T ss_dssp             SHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHH---------C----CHHHHHHHHHHHH-------------
T ss_pred             CchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccC---------cccccCcHHHHHHHHHHH-------------
Confidence              99999999999999999999999999999999998775         346779999999999997             


Q ss_pred             CcccccccccccccccccccchhhHHH--HHHHHhcCCCCCCCCCccccchhhHHHHHHHHHHHHHHHhhh---cch---
Q 005702          174 CSSVSSKRKKGEKSKRNSMRSTMGELL--VLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQ---KSE---  245 (682)
Q Consensus       174 ~~~~~~kr~k~~~~k~~~~~~~l~~il--i~~~L~~~~~~~~~~~~~~~~~~~kegaL~~lg~la~~l~~~---~~~---  245 (682)
                          ++++++.          ++++++  +.+++++|...+      ..+|+.||||++++|++++.+...   ..+   
T Consensus       389 ----~~~~~~~----------v~~~~l~~i~~~l~~~~~~~------~~~w~~reaal~algaia~~~~~~~~~~~~~~~  448 (960)
T 1wa5_C          389 ----KEKNEVL----------VTNIFLAHMKGFVDQYMSDP------SKNWKFKDLYIYLFTALAINGNITNAGVSSTNN  448 (960)
T ss_dssp             ----HHHCHHH----------HHHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCT
T ss_pred             ----HHHcchh----------HHHHHHHHHHHHHHHhccCc------chhHHHHHHHHHHHHHHHHHhccccCCcccccc
Confidence                5555543          555443  677787765432      247999999999999999764211   111   


Q ss_pred             --hHHHHHHHhhhhcccCCCC---CcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHH
Q 005702          246 --FTANLVRSRVLPLYSVSVC---LPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAI  320 (682)
Q Consensus       246 --~le~fL~~~VlP~l~~~s~---~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL  320 (682)
                        .+++|+.++|+|+++  ++   +|++|+||||++|+|++.++++.+..+++.++++|.|++      ++||.+||.||
T Consensus       449 ~~~l~~~l~~~v~p~l~--~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~------~~V~~~A~~Al  520 (960)
T 1wa5_C          449 LLNVVDFFTKEIAPDLT--SNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDE------YVVYTYAAITI  520 (960)
T ss_dssp             TCCHHHHHHHHTHHHHH--CSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSC------HHHHHHHHHHH
T ss_pred             cccHHHHHHHHhHHHhc--CCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCC------hhHHHHHHHHH
Confidence              578999999999998  45   999999999999999999988999999999999999877      99999999999


Q ss_pred             HHhhhc-------------CCCCCChHHHHHHHHHhhccc-----c-hhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHH
Q 005702          321 VGLLEN-------------DYMPPEWYPLLQVIVGRIGYE-----D-EENSILFELLSSVVGAANENVADHIPYIVSSLV  381 (682)
Q Consensus       321 ~~~l~~-------------~~l~p~l~~llq~Ll~~L~~e-----~-~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~  381 (682)
                      .+|+++             +.+.||++++++.|++.+...     . .+++.++++|+++++++++++.||+..+++.|.
T Consensus       521 ~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~  600 (960)
T 1wa5_C          521 EKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFI  600 (960)
T ss_dssp             HHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHH
T ss_pred             HHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            999984             258999999999999966553     1 268999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCChhhHHhHHHHHHHHHHhhhhhchhhhhhhccCCccchhHhHHHHHHHHHHHhhhhhcccccccccC
Q 005702          382 AAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVS  461 (682)
Q Consensus       382 ~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~L~ti~tllq~~~~~~~~e~~~s~~  461 (682)
                      ..+.+.++++.+  +.+.++.|++|++++++                                                 
T Consensus       601 ~~l~~~~~~~~~--~~~~~~~~e~l~~l~~~-------------------------------------------------  629 (960)
T 1wa5_C          601 EIVTIMAKNPSN--PRFTHYTFESIGAILNY-------------------------------------------------  629 (960)
T ss_dssp             HHHHHHTTSCCC--HHHHHHHHHHHHHHHHT-------------------------------------------------
T ss_pred             HHHHHHHhCCCC--cHHHHHHHHHHHHHHhc-------------------------------------------------
Confidence            999887654433  34444555555555443                                                 


Q ss_pred             CCcchHHhHHHHHHHHHhhcCchhHHHhhhHHHHHHHHHHHH------------hcccchhhhh-----hchHHHHHHHH
Q 005702          462 APPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLI------------GDWHAWEETE-----DLSVFDCIKEI  524 (682)
Q Consensus       462 ~~~~~~~~le~~l~~vi~~i~~~~~~l~~~~~~~l~e~~~li------------~~W~~~e~~~-----~~~~~dyl~ev  524 (682)
                      ..++.+..+++.+.|++..+      +++...+|+.++++++            .+|+.++.+.     +..+  |+..+
T Consensus       630 ~~~~~~~~~~~~~~p~~~~i------L~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~  701 (960)
T 1wa5_C          630 TQRQNLPLLVDSMMPTFLTV------FSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKG--NIPAV  701 (960)
T ss_dssp             SCGGGHHHHHHHHHHHHHHH------HHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTT--THHHH
T ss_pred             CCcchHHHHHHHHHHHHHHH------HHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHHHhcCCC--CchhH
Confidence            22233344444444554444      4444444444444433            3466665443     2234  88888


Q ss_pred             HhhhccccccccccccCCCCCCCCCChhHHHHHHHHHHhhhhhcCchhHHHHhHhHHHHhhcccccccccccchhhHHHH
Q 005702          525 VNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISF  604 (682)
Q Consensus       525 i~l~~~~~L~Nfi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ac~~~~~ll~~~~~~~~~~~~~~~~~~~f  604 (682)
                      +.     .|++|+.+|.+.+.+    .+.+++++...++...   +  ...||++...++    ..+++ .....|++.+
T Consensus       702 ~~-----~L~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~---~--~~~a~~ll~~i~----~~~~~-~~~~~yl~~i  762 (960)
T 1wa5_C          702 TR-----LLKSFIKTDSSIFPD----LVPVLGIFQRLIASKA---Y--EVHGFDLLEHIM----LLIDM-NRLRPYIKQI  762 (960)
T ss_dssp             HH-----HHHHHHHHHGGGCSC----SHHHHHHHHHHHTCTT---T--HHHHHHHHHHHH----HHSCH-HHHGGGHHHH
T ss_pred             HH-----HHHHHHHhChHHHHH----HHHHHHHHHHHhCCCc---c--cchHHHHHHHHH----HHCCH-HHHHHHHHHH
Confidence            88     899999999877765    4567777765554321   1  144788777766    33332 1278999999


Q ss_pred             HHHHHhhhhhhcCCCCcch-HhHHHHHHHhhccChHHHHHHHhhcCccc-HH----HHHHHHHhhh
Q 005702          605 SCAAFSRFRAIQSKPSSLW-KPVVLAISSCYLCYPAVVEGILKKDEDGG-FA----LWGSALAFLC  664 (682)
Q Consensus       605 ~~~a~~~~~~~~~~~~~~~-~~~~~vi~~~~~~~p~~~~~~L~~~~~~~-~~----~w~~~~~~~~  664 (682)
                      +..++.|++.  ++...+. ..+..+...|+.++|+.+.++|++.+.+. +.    .|...+..+.
T Consensus       763 ~~~l~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~~  826 (960)
T 1wa5_C          763 AVLLLQRLQN--SKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIG  826 (960)
T ss_dssp             HHHHHHGGGS--SCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCC
T ss_pred             HHHHHHHHhh--CCcHhHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhhcc
Confidence            9999999974  3334454 33445556667789999999999876443 33    7988877653
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 682
d1wa5c_959 a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc 1e-13
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.9 bits (175), Expect = 1e-13
 Identities = 55/393 (13%), Positives = 119/393 (30%), Gaps = 76/393 (19%)

Query: 30  IFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGP 89
           +     TR+      ++ + +     ++   +N  K D L    +S +   ++ V     
Sbjct: 269 LVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDIL----VSKSLSFLTAVTRIPK 324

Query: 90  GWRLV--SPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLF 147
            + +       + + ++ I P + L E+D+  +E+D  EYIR++             D  
Sbjct: 325 YFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEG---------SDTD 375

Query: 148 TARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSR 207
           T R++  + L  +       +                                 L  +  
Sbjct: 376 TRRRACTDFLKELKEKNEVLVTNI-----------------------------FLAHMKG 406

Query: 208 FPIPCDANASHSRIQKD----YFGVLMAYGGLQEFLREQKS---EFTANLVRSRVLPLYS 260
           F     ++ S +   KD     F  L   G +        +          +     L S
Sbjct: 407 FVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTS 466

Query: 261 VSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAI 320
            ++    L   A   +    + L +    ++   L   LQ      T  Y V   AA  I
Sbjct: 467 NNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQ------TDEYVVYTYAAITI 520

Query: 321 VGLLEN-----------------DYMPPEWYPLLQVIVGRIGYEDE--ENSILFELLSSV 361
             +L                   +        L+ +I+      ++  EN  L   +  V
Sbjct: 521 EKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRV 580

Query: 362 VGAANENVADHIPYIVSSLVAAISKHMHPSSEP 394
           +  + +++    P +++  +  ++      S P
Sbjct: 581 LQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNP 613

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query682
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 100.0
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.75
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.3
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.24
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.81
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.27
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.13
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.89
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 97.63
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.59
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 97.51
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 97.33
d1b3ua_588 Constant regulatory domain of protein phosphatase 96.97
d1b3ua_588 Constant regulatory domain of protein phosphatase 96.96
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 95.73
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 95.65
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 94.13
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 93.88
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 93.6
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 93.2
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 92.89
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 92.34
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 92.3
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 91.48
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 87.82
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 86.23
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 84.33
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.5e-35  Score=346.32  Aligned_cols=517  Identities=13%  Similarity=0.114  Sum_probs=375.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHHhhhhHhhhHHHHHHHHHHHHHhccccccCcccCHHHHHHHHHHHHHHhccCccccccc-
Q 005702           17 NLLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVS-   95 (682)
Q Consensus        17 ~~~~~K~kKw~~~~l~~l~~Ry~~~~~~f~p~il~~~l~~l~~~~~~~~~~~lsd~~i~~~~~fl~~~v~~~~~~~ll~-   95 (682)
                      ...++|+|||+.+++.++..+|.+++.++++.+++.+++.+...    ......+.++..+++|+..+++.+.+++.+. 
T Consensus       256 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~  331 (959)
T d1wa5c_         256 ASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSI----SNQPKYDILVSKSLSFLTAVTRIPKYFEIFNN  331 (959)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC----CSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCS
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----hcccccHHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence            66678999999999999999999999999999999999998863    2334568999999999999999998888774 


Q ss_pred             -ccHHHHHHHHhhccccCChhhhhhhhhCHHHHHHhcCCCchhhhccccccccchhHHHHHHHHHHhhcCCCCCCCCCCC
Q 005702           96 -PHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNC  174 (682)
Q Consensus        96 -p~l~~Li~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~~~~ed~~S~R~aA~~lL~~L~~~~~~~~~~~~~~  174 (682)
                       +++..++..+|+|+++++++|+|.|++||++|++++.+         .+|.+++|.+|.+++..+              
T Consensus       332 ~~~l~~i~~~li~~~~~~~~~d~e~~~~dp~~~~~~~~~---------~~~~~~~r~~a~~ll~~l--------------  388 (959)
T d1wa5c_         332 ESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLE---------GSDTDTRRRACTDFLKEL--------------  388 (959)
T ss_dssp             HHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHH---------C----CHHHHHHHHHHHH--------------
T ss_pred             hhHHHHHHHHHHHHHhcCCHHHHHHHhcchHHHHHHHhh---------hcccccHHHHHHHHHHHH--------------
Confidence             89999999999999999999999999999999998776         456789999999999996              


Q ss_pred             cccccccccccccccccccchhhHHH--HHHHHhcCCCCCCCCCccccchhhHHHHHHHHHHHHHHHhhh------cc--
Q 005702          175 SSVSSKRKKGEKSKRNSMRSTMGELL--VLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQ------KS--  244 (682)
Q Consensus       175 ~~~~~kr~k~~~~k~~~~~~~l~~il--i~~~L~~~~~~~~~~~~~~~~~~~kegaL~~lg~la~~l~~~------~~--  244 (682)
                         ++++++.          +...++  +.+.++++...      ...+|+.+|+++.++|+++......      ..  
T Consensus       389 ---~~~~~~~----------~~~~~~~~i~~~~~~~~~~------~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~  449 (959)
T d1wa5c_         389 ---KEKNEVL----------VTNIFLAHMKGFVDQYMSD------PSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNL  449 (959)
T ss_dssp             ---HHHCHHH----------HHHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTT
T ss_pred             ---HHhcccc----------chHHHHHHHHHHHHhhccC------CccchHHHHHHHHHHHHHHhhhhhhhhhhhcccch
Confidence               5555443          333222  55566554332      2458999999999999988543211      11  


Q ss_pred             hhHHHHHHHhhhhcccC-CCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHh
Q 005702          245 EFTANLVRSRVLPLYSV-SVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL  323 (682)
Q Consensus       245 ~~le~fL~~~VlP~l~~-~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~  323 (682)
                      ..+.+++.++|.|++.. ..+++++|+||||++|+|++.+.++.+.++++.++++|++++      .+||.+||.|+..+
T Consensus       450 ~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~~~~~~~~~l~~~L~~~~------~~V~~~a~~al~~~  523 (959)
T d1wa5c_         450 LNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDE------YVVYTYAAITIEKI  523 (959)
T ss_dssp             CCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSC------HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhCCCc------hhHHHHHHHHHHHH
Confidence            23689999999999974 256789999999999999999888899999999999999987      99999999999999


Q ss_pred             hhc-------------CCCCCChHHHHHHHHHhhcccc------hhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHH
Q 005702          324 LEN-------------DYMPPEWYPLLQVIVGRIGYED------EENSILFELLSSVVGAANENVADHIPYIVSSLVAAI  384 (682)
Q Consensus       324 l~~-------------~~l~p~l~~llq~Ll~~L~~e~------~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f  384 (682)
                      +..             +.+.|+++++++.++..+....      .+++.++.+|+++++.+++.+.||+..+++.|.+.+
T Consensus       524 ~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~  603 (959)
T d1wa5c_         524 LTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIV  603 (959)
T ss_dssp             TTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHH
T ss_pred             HHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            873             2589999999999999664432      135679999999999999999999999999999999


Q ss_pred             HHhcCCCCCCChhhHHhHHHHHHHHHHhhhhhchhhhhhhccCCccchhHhHHHHHHHHHHHhhhhhcccccccccCCCc
Q 005702          385 SKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPP  464 (682)
Q Consensus       385 ~k~~~~~~~~~~~~~~~~~~aLa~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~L~ti~tllq~~~~~~~~e~~~s~~~~~  464 (682)
                      .+..+++.+  +...+.+|++|+.+....                                                 .+
T Consensus       604 ~~~~~~~~~--~~~~~~~~e~l~~l~~~~-------------------------------------------------~~  632 (959)
T d1wa5c_         604 TIMAKNPSN--PRFTHYTFESIGAILNYT-------------------------------------------------QR  632 (959)
T ss_dssp             HHHTTSCCC--HHHHHHHHHHHHHHHHTS-------------------------------------------------CG
T ss_pred             HHHhcCccc--hHHHHHHHHHHHHHHHhc-------------------------------------------------Cc
Confidence            888665543  344555555554444432                                                 22


Q ss_pred             chHHhHHHHHHHHHhhcCchhHHHhhhHHHHHHHHHHHH------------hcccchhhhh---hchHHHHHHHHHhhhc
Q 005702          465 SCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLI------------GDWHAWEETE---DLSVFDCIKEIVNLHS  529 (682)
Q Consensus       465 ~~~~~le~~l~~vi~~i~~~~~~l~~~~~~~l~e~~~li------------~~W~~~e~~~---~~~~~dyl~evi~l~~  529 (682)
                      +.+..++..+.|++..+      +++...+|+.++++++            ..|+.++.+.   .....+++.++..   
T Consensus       633 ~~~~~l~~~l~p~i~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~---  703 (959)
T d1wa5c_         633 QNLPLLVDSMMPTFLTV------FSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTR---  703 (959)
T ss_dssp             GGHHHHHHHHHHHHHHH------HHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTTTHHHHHH---
T ss_pred             hhHHHHHHHHHHHHHHH------HhccchhHHHHHHHHHHHHHHhCCCccHHHHHHHHHHhhHHHHHHhhhHHHHHH---
Confidence            33334444444444444      4444334444444433            3455554432   1122346778888   


Q ss_pred             cccccccccccCCCCCCCCCChhHHHHHHHHHHhhhhhcCchhHHHHhHhHHHHhhcccccccccccchhhHHHHHHHHH
Q 005702          530 KYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAF  609 (682)
Q Consensus       530 ~~~L~Nfi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ac~~~~~ll~~~~~~~~~~~~~~~~~~~f~~~a~  609 (682)
                        .+++|+.+|++.+.+.    ..+++++...+...     ....-|+.++..++    ..+..+ ..+++++.+...++
T Consensus       704 --~l~~~~~~~~~~~~~~----~~~l~~~~~~l~~~-----~~~~~~~~ll~~ii----~~~~~~-~~~~~l~~i~~~~~  767 (959)
T d1wa5c_         704 --LLKSFIKTDSSIFPDL----VPVLGIFQRLIASK-----AYEVHGFDLLEHIM----LLIDMN-RLRPYIKQIAVLLL  767 (959)
T ss_dssp             --HHHHHHHHHGGGCSCS----HHHHHHHHHHHTCT-----TTHHHHHHHHHHHH----HHSCHH-HHGGGHHHHHHHHH
T ss_pred             --HHHHHHHhCHHhhcch----HHHHHHHHHHHCCC-----cchHHHHHHHHHHH----HHCchh-hhHhHHHHHHHHHH
Confidence              8999999998888664    34666666554321     11123677777766    344322 35789999999999


Q ss_pred             hhhhhhcCCCCcchHhHHHHHHHhhccChHHHHHHHhhcCccc-----HHHHHHHHHh
Q 005702          610 SRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGG-----FALWGSALAF  662 (682)
Q Consensus       610 ~~~~~~~~~~~~~~~~~~~vi~~~~~~~p~~~~~~L~~~~~~~-----~~~w~~~~~~  662 (682)
                      .|+... +++.......+.+...|+.++|+.+.++|++...+.     ...|...+..
T Consensus       768 ~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  824 (959)
T d1wa5c_         768 QRLQNS-KTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPT  824 (959)
T ss_dssp             HGGGSS-CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGG
T ss_pred             HHHHhc-ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhchhhHHHHHHHHHHhcccc
Confidence            999742 222222233344555667789999999999866543     3347665544
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure