Citrus Sinensis ID: 005710

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-
MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNNAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGTSSSYLQRHPQSHQIMNCRRLSQTG
ccccccEEEEEcccccccccHHHHHHHHcccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHHcccEEEEEcccEEEcccccccccccccEEccHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHcccccccHHHHHHHHHHHHHcHHHcHHHHcccccccccccccHHHccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHcccccccHHcHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEccccccccccccccccccccccHHHHcccccccccccccccccc
ccccccEEEEEEccccccccHHHHHHHHcccEEEEEEEccHHcccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHHcccEEEEEccccccccHHHEccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHccccccccHHHHHHHcccccHHHHHHcccHccccccccccHHHccHHHHHHccccEcccEccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccEcccccccccccccEEEcccccccccccccccccccccccccccccccccccccEEcEEcccccccccccccccccccccHHHHccccccccEEEcHHccccc
msgrgcsivwfrrdlrvednpalaaGVRAGAVIAVFIwapeeegpyypgrvsrwWLKHSLSHLDSSLRSLGTslvtkrstdSVSSLLEVVKATgatqlffnhlydplslvrDHRAKEALTAQGIAVRSFnadllyepwdvndaqgqpfATFAAFWEKClsmpfdpdapllppkrinsgdmsrcpsdtlvfedesekgsNALLARawspgwsnaDKALTTFingplieysknrrkadsattsflsphlhfgevsVRKVFHLVRIKQVSwanegnkagdESVNLFLKSIGLreysrymsfnhpysherpllghlKFFSWVVDEGYFKawrqgrtgyplvdAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDadlesdalgwqyisgtipdgrafdridnpqfegykfdpngeyvRRWLpelarlptewihhpwnapeSVLQAAGielgsnypfpivrIDAAKCRLDEALSEMWQQEAASRAAIengteeglgdssdsapiafppdiqmeeipeparnnlpttarryedqmvpsmttSLVRVEEEESSLELRNSAEesraevprnanvnqeprrdtlnqGVLQTVHNNNAFQQFNAAIVLANaedstaessstsrrerdggvvpvwspatssyseqlvgdengigtsssylqrhpqshqimncrrlsqtg
msgrgcsivwfrrDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTsflsphlhfgevsvRKVFHLVRIKQVswanegnkagdesVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQfegykfdpngeYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPpdiqmeeipeparnnLPTTARRYEDQMVPSMTtslvrveeeesslelrnsaeesraevprnanvnqeprrDTLNQGVLQTVHNNNAFQQFNAAIVLANAEDStaessstsrrerdggvvpvwspatssyseqlVGDENGIGTSSSYlqrhpqshqimncrrlsqtg
MSGRGCSIVWFRRDLRVEDNPalaagvragaviavFIWAPEEEGPYYPGRVSRWWlkhslshldsslrslGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTslvrveeeesslelrnsaeesrAEVPRNANVNQEPRRDTLNQGVLQTVHnnnafqqfnaaIVLANaedstaessstsrrerdGGVVPVWSPATSSYSEQLVGDENGIGTSSSYLQRHPQSHQIMNCRRLSQTG
****GCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVT*****SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPF************************************ALLARAWSPGWSNADKALTTFINGPLIEYSK********TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMW**********************************************************************************************************VLQTVHNNNAFQQFNAAIVLA*********************************************************************
***RGCS*VWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPP*RINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQV************SVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL***********************************************************************************************************************************************************W*************************************R******
MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSK*********TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENG********SDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTS***************************ANVNQEPRRDTLNQGVLQTVHNNNAFQQFNAAIVLANA*****************GVVPVWSPATSSYSEQLVGDENGIGTSSSYLQRHPQSHQIMNCRRLSQTG
****GCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAI****************************************************************************************************************************************GVV****P*******************SSYLQRHPQSHQIMNCRRL****
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iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNNAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGTSSSYLQRHPQSHQIMNCRRLSQTG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query681 2.2.26 [Sep-21-2011]
Q43125681 Cryptochrome-1 OS=Arabido yes no 0.969 0.969 0.792 0.0
Q96524612 Cryptochrome-2 OS=Arabido no no 0.766 0.852 0.571 0.0
P40115501 Cryptochrome-1 OS=Sinapis N/A no 0.706 0.960 0.588 1e-173
Q9KNA8469 Deoxyribodipyrimidine pho yes no 0.631 0.916 0.319 1e-54
P00914472 Deoxyribodipyrimidine pho N/A no 0.651 0.940 0.320 3e-54
Q55081488 Deoxyribodipyrimidine pho N/A no 0.643 0.897 0.303 7e-51
P25078473 Deoxyribodipyrimidine pho yes no 0.657 0.947 0.308 9e-51
P12768455 Deoxyribodipyrimidine pho yes no 0.647 0.969 0.316 1e-50
Q04449479 Deoxyribodipyrimidine pho yes no 0.662 0.941 0.292 2e-48
Q9HQ46481 Deoxyribodipyrimidine pho yes no 0.656 0.929 0.306 2e-47
>sp|Q43125|CRY1_ARATH Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=2 Back     alignment and function desciption
 Score = 1035 bits (2675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/681 (79%), Positives = 591/681 (86%), Gaps = 21/681 (3%)

Query: 8   IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
           IVWFRRDLRVEDNPALAA VRAG VIA+F+WAPEEEG Y+PGRVSRWWLK+SL+ LDSSL
Sbjct: 15  IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL 74

Query: 68  RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
           RSLGT L+TKRSTDSV+SLL+VVK+TGA+Q+FFNHLYDPLSLVRDHRAK+ LTAQGIAVR
Sbjct: 75  RSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVR 134

Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
           SFNADLLYEPW+V D  G+PF+ FAAFWE+CLSMP+DP++PLLPPK+I SGD+S+C +D 
Sbjct: 135 SFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSKCVADP 194

Query: 188 LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHL 247
           LVFED+SEKGSNALLARAWSPGWSN DKALTTFINGPL+EYSKNRRKADSATTSFLSPHL
Sbjct: 195 LVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPHL 254

Query: 248 HFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERP 307
           HFGEVSVRKVFHLVRIKQV+WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHERP
Sbjct: 255 HFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERP 314

Query: 308 LLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 367
           LLGHLKFF W VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ
Sbjct: 315 LLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 374

Query: 368 LPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVR 427
           LPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVR
Sbjct: 375 LPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVR 434

Query: 428 RWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQ 487
           RWLPEL+RLPT+WIHHPWNAPESVLQAAGIELGSNYP PIV +D AK RL EALS+MWQ 
Sbjct: 435 RWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQL 494

Query: 488 EAASRAAIENGTEEGLGDSS--DSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPS 545
           EAASRAAIENG+EEGLGDS+  + API FP DI MEE  EP R N     RRYEDQMVPS
Sbjct: 495 EAASRAAIENGSEEGLGDSAEVEEAPIEFPRDITMEET-EPTRLN---PNRRYEDQMVPS 550

Query: 546 MTTSLVRVEE-EESSLELRNSAEESRAEVPRN-ANVNQEPRRDTLNQGVLQTVHNNNAFQ 603
           +T+SL+R EE EESSL LRNS  +SRAEVPRN  N NQ  +R         T        
Sbjct: 551 ITSSLIRPEEDEESSLNLRNSVGDSRAEVPRNMVNTNQAQQRRAEPASNQVTA----MIP 606

Query: 604 QFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIG---TSSS 660
           +FN  IV  + EDSTAESSS+ RRER GG+VP WSP    YSEQ   +ENGIG   T+SS
Sbjct: 607 EFNIRIVAESTEDSTAESSSSGRRERSGGIVPEWSPG---YSEQFPSEENGIGGGSTTSS 663

Query: 661 YLQRHPQSHQIMNCRRLSQTG 681
           YLQ H   H+I+N RRLSQTG
Sbjct: 664 YLQNH---HEILNWRRLSQTG 681
Mediates blue light-induced gene expression through the inhibition of COP1-mediated degradation of the transcription factor BIT1. Involved in blue light-dependent stomatal opening, CHS gene expression, inhibition of stem growth and increase of root growth.
Arabidopsis thaliana (taxid: 3702)
>sp|Q96524|CRY2_ARATH Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2 Back     alignment and function description
>sp|P40115|CRY1_SINAL Cryptochrome-1 OS=Sinapis alba GN=PHR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9KNA8|PHR_VIBCH Deoxyribodipyrimidine photo-lyase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=phrA PE=1 SV=1 Back     alignment and function description
>sp|P00914|PHR_ECOLI Deoxyribodipyrimidine photo-lyase OS=Escherichia coli (strain K12) GN=phrB PE=1 SV=1 Back     alignment and function description
>sp|Q55081|PHR_SYNY3 Deoxyribodipyrimidine photo-lyase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=phrA PE=1 SV=1 Back     alignment and function description
>sp|P25078|PHR_SALTY Deoxyribodipyrimidine photo-lyase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=phrB PE=1 SV=2 Back     alignment and function description
>sp|P12768|PHR_STRGR Deoxyribodipyrimidine photo-lyase OS=Streptomyces griseus GN=phr PE=3 SV=1 Back     alignment and function description
>sp|Q04449|PHR_BACPE Deoxyribodipyrimidine photo-lyase OS=Bacillus pseudofirmus (strain OF4) GN=phr PE=3 SV=2 Back     alignment and function description
>sp|Q9HQ46|PHR_HALSA Deoxyribodipyrimidine photo-lyase OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=phr PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query681
224084664680 predicted protein [Populus trichocarpa] 0.998 1.0 0.870 0.0
340007733681 cryptochrome 1.2 [Populus tremula] 1.0 1.0 0.876 0.0
224063235681 predicted protein [Populus trichocarpa] 1.0 1.0 0.876 0.0
340007731681 cryptochrome 1.1 [Populus tremula] 1.0 1.0 0.872 0.0
161898816681 cryptochrome 1 [Vitis riparia] 0.997 0.997 0.871 0.0
302141959691 unnamed protein product [Vitis vinifera] 0.997 0.982 0.869 0.0
225459298681 PREDICTED: cryptochrome-1 [Vitis vinifer 0.997 0.997 0.869 0.0
161779368681 cryptochrome 1 [Vitis vinifera] 0.997 0.997 0.868 0.0
363807588681 cryptochrome-1-like [Glycine max] gi|261 0.997 0.997 0.844 0.0
78217441681 cryptochrome 1 [Nicotiana sylvestris] 0.997 0.997 0.831 0.0
>gi|224084664|ref|XP_002307379.1| predicted protein [Populus trichocarpa] gi|222856828|gb|EEE94375.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1230 bits (3182), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/681 (87%), Positives = 628/681 (92%), Gaps = 1/681 (0%)

Query: 1   MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
           MSG GCSIVWFRRDLRVEDNPALAAGVRAGAV+AVF+WAPEEEG YYPGRVSRWWLK SL
Sbjct: 1   MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVAVFVWAPEEEGHYYPGRVSRWWLKQSL 60

Query: 61  SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
           +HLDSSLRSLGTSLVTKRSTDSVSSLLEVVK+TGATQL FNHLYDPLSLVRDHRAKE LT
Sbjct: 61  AHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKSTGATQLLFNHLYDPLSLVRDHRAKEILT 120

Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
           AQGI VRSFNADLLYEPWDVNDAQG+PF TF  FWE+CLSMPFDP+APLLPPKRI SGD+
Sbjct: 121 AQGITVRSFNADLLYEPWDVNDAQGRPFTTFDTFWERCLSMPFDPEAPLLPPKRIISGDV 180

Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
           SRCPS TLVFEDESEKGSNALLARAWSPGWSNAD+ALTTFINGPLIEYS NRRKADSATT
Sbjct: 181 SRCPSVTLVFEDESEKGSNALLARAWSPGWSNADRALTTFINGPLIEYSMNRRKADSATT 240

Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
           SFLSPHLHFGEVSVRKVFHLVRIKQV WANEGN+AG+ESVNLF+KSIGLREYSRY+SFNH
Sbjct: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNRAGEESVNLFIKSIGLREYSRYLSFNH 300

Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
           P +HERPLLGHLKFF WVVDEGYFKAWRQGRTGYPLVDAGMRELWA GWLHDRIRVVV+S
Sbjct: 301 PCTHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWAAGWLHDRIRVVVAS 360

Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
           FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFD
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFD 420

Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
           PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP PIV IDAAK RL+EA
Sbjct: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLEEA 480

Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYED 540
           LSEMWQQEAASRAAIENGTEEGLGDSS+SAP AFP DI MEE  EP RNN P T RRYED
Sbjct: 481 LSEMWQQEAASRAAIENGTEEGLGDSSESAPFAFPEDIHMEENHEPVRNNPPATNRRYED 540

Query: 541 QMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNN 600
           QMVPSMT+S +R+E+EE+S ++RNS  + RAEVPR+ NVNQEPRRD LNQG +QTV NN 
Sbjct: 541 QMVPSMTSSFLRIEDEETS-DVRNSTGDGRAEVPRDVNVNQEPRRDALNQGFVQTVRNNT 599

Query: 601 AFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGTSSS 660
           A   FN +  L N EDSTAESSS+ RRERDGG+VPVWSP TSSYSEQ VGD+NGIG +SS
Sbjct: 600 ALSPFNISRGLTNVEDSTAESSSSGRRERDGGIVPVWSPPTSSYSEQFVGDDNGIGATSS 659

Query: 661 YLQRHPQSHQIMNCRRLSQTG 681
           YLQRHPQSHQI+N RRLSQTG
Sbjct: 660 YLQRHPQSHQIINWRRLSQTG 680

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|340007733|gb|AEK26572.1| cryptochrome 1.2 [Populus tremula] Back     alignment and taxonomy information
>gi|224063235|ref|XP_002301054.1| predicted protein [Populus trichocarpa] gi|222842780|gb|EEE80327.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|340007731|gb|AEK26571.1| cryptochrome 1.1 [Populus tremula] Back     alignment and taxonomy information
>gi|161898816|gb|ABX80391.1| cryptochrome 1 [Vitis riparia] Back     alignment and taxonomy information
>gi|302141959|emb|CBI19162.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225459298|ref|XP_002285792.1| PREDICTED: cryptochrome-1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|161779368|gb|ABX79355.1| cryptochrome 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|363807588|ref|NP_001242152.1| cryptochrome-1-like [Glycine max] gi|261876455|dbj|BAI47553.1| cryptochrome1 [Glycine max] gi|261876457|dbj|BAI47554.1| cryptochrome1 [Glycine max] Back     alignment and taxonomy information
>gi|78217441|gb|ABB36796.1| cryptochrome 1 [Nicotiana sylvestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query681
TAIR|locus:2138728681 CRY1 "cryptochrome 1" [Arabido 0.976 0.976 0.716 6.5e-264
TAIR|locus:2018254612 CRY2 "cryptochrome 2" [Arabido 0.766 0.852 0.543 8.4e-161
TIGR_CMR|CBU_1176472 CBU_1176 "deoxyribodipyrimidin 0.668 0.963 0.349 1.1e-76
TIGR_CMR|BA_3180476 BA_3180 "deoxyribodipyrimidine 0.671 0.960 0.326 3.6e-73
UNIPROTKB|Q9KNA8469 phrA "Deoxyribodipyrimidine ph 0.641 0.931 0.299 2e-49
TIGR_CMR|VC_A0057469 VC_A0057 "deoxyribodipyrimidin 0.641 0.931 0.299 2e-49
TIGR_CMR|SPO_1917481 SPO_1917 "deoxyribodipyrimidin 0.697 0.987 0.288 1.8e-48
UNIPROTKB|P00914472 phr "deoxyribodipyrimidine pho 0.650 0.938 0.307 2.9e-48
UNIPROTKB|Q48MU1482 phrB "Deoxyribodipyrimidine ph 0.690 0.975 0.274 5e-44
TIGR_CMR|SO_3384512 SO_3384 "deoxyribodipyrimidine 0.528 0.703 0.298 7.5e-42
TAIR|locus:2138728 CRY1 "cryptochrome 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2539 (898.8 bits), Expect = 6.5e-264, P = 6.5e-264
 Identities = 492/687 (71%), Positives = 537/687 (78%)

Query:     2 SGRGCSIVWFRRDLRVEDNPXXXXXXXXXXXXXXFIWAPEEEGPYYPGRVSRWWXXXXXX 61
             SG GCSIVWFRRDLRVEDNP              F+WAPEEEG Y+PGRVSRWW      
Sbjct:    10 SG-GCSIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLA 68

Query:    62 XXXXXXXXXGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTA 121
                      GT L+TKRSTDSV+SLL+VVK+TGA+Q+FFNHLYDPLSLVRDHRAK+ LTA
Sbjct:    69 QLDSSLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTA 128

Query:   122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMS 181
             QGIAVRSFNADLLYEPW+V D  G+PF+ FAAFWE+CLSMP+DP++PLLPPK+I SGD+S
Sbjct:   129 QGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVS 188

Query:   182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
             +C +D LVFED+SEKGSNALLARAWSPGWSN DKALTTFINGPL+EYSKNRRKADSATTS
Sbjct:   189 KCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTS 248

Query:   242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
             FLSPHLHFGEVSVRKVFHLVRIKQV+WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHP
Sbjct:   249 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP 308

Query:   302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
             YSHERPLLGHLKFF W VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF
Sbjct:   309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368

Query:   362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
             FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDP
Sbjct:   369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428

Query:   422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
             NGEYVRRWLPEL+RLPT+WIHHPWNAPESVLQAAGIELGSNYP PIV +D AK RL EAL
Sbjct:   429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488

Query:   482 SEMWQQEAASRAAIENGTEEGLGDSSD--SAPIAFPPDIQMEEIPEPARNNLPTTARRYE 539
             S+MWQ EAASRAAIENG+EEGLGDS++   API FP DI MEE  EP R N P   RRYE
Sbjct:   489 SQMWQLEAASRAAIENGSEEGLGDSAEVEEAPIEFPRDITMEET-EPTRLN-PN--RRYE 544

Query:   540 DQMVPSMTTXXXX-XXXXXXXXXXXXXXXXXXAEVPRN-ANVNQEPRRDTLNQGVLQTVH 597
             DQMVPS+T+                       AEVPRN  N NQ  +R    +     V 
Sbjct:   545 DQMVPSITSSLIRPEEDEESSLNLRNSVGDSRAEVPRNMVNTNQAQQRRA--EPASNQV- 601

Query:   598 XXXXXXXXXXXIVLANXXXXXXXXXXXXXXXXXGGVVPVWSPATSSYSEQLVGDENGIG- 656
                        IV  +                 GG+VP WSP    YSEQ   +ENGIG 
Sbjct:   602 -TAMIPEFNIRIVAESTEDSTAESSSSGRRERSGGIVPEWSPG---YSEQFPSEENGIGG 657

Query:   657 --TSSSYLQRHPQSHQIMNCRRLSQTG 681
               T+SSYLQ H   H+I+N RRLSQTG
Sbjct:   658 GSTTSSYLQNH---HEILNWRRLSQTG 681
GO:0003913 "DNA photolyase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006281 "DNA repair" evidence=IEA
GO:0007623 "circadian rhythm" evidence=NAS
GO:0009637 "response to blue light" evidence=RCA;IMP;NAS
GO:0009785 "blue light signaling pathway" evidence=TAS
GO:0005515 "protein binding" evidence=IPI
GO:0009640 "photomorphogenesis" evidence=IMP
GO:0051510 "regulation of unidimensional cell growth" evidence=IMP
GO:0004672 "protein kinase activity" evidence=IDA
GO:0005524 "ATP binding" evidence=IDA
GO:0046777 "protein autophosphorylation" evidence=RCA;IDA
GO:0055114 "oxidation-reduction process" evidence=IMP
GO:0042802 "identical protein binding" evidence=IPI
GO:0042803 "protein homodimerization activity" evidence=IPI
GO:0009414 "response to water deprivation" evidence=IGI
GO:0010118 "stomatal movement" evidence=IGI
GO:0010343 "singlet oxygen-mediated programmed cell death" evidence=IMP
GO:0046283 "anthocyanin-containing compound metabolic process" evidence=IMP
GO:0010617 "circadian regulation of calcium ion oscillation" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
GO:0010075 "regulation of meristem growth" evidence=IGI
GO:0009583 "detection of light stimulus" evidence=IMP
GO:0010155 "regulation of proton transport" evidence=RCA
GO:0009882 "blue light photoreceptor activity" evidence=IMP
TAIR|locus:2018254 CRY2 "cryptochrome 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1176 CBU_1176 "deoxyribodipyrimidine photolyase - class I" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3180 BA_3180 "deoxyribodipyrimidine photolyase family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KNA8 phrA "Deoxyribodipyrimidine photo-lyase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_A0057 VC_A0057 "deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_1917 SPO_1917 "deoxyribodipyrimidine photolyase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|P00914 phr "deoxyribodipyrimidine photolyase (photoreactivation)" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q48MU1 phrB "Deoxyribodipyrimidine photolyase" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3384 SO_3384 "deoxyribodipyrimidine photolyase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q43125CRY1_ARATHNo assigned EC number0.79290.96910.9691yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00050718
hypothetical protein (680 aa)
(Populus trichocarpa)
Predicted Functional Partners:
PHYB1
SubName- Full=Phytochrome B1; (1126 aa)
    ••• 0.835
PHYA
SubName- Full=Phytochrome A; Flags- Fragment; (1126 aa)
    ••• 0.835
fgenesh4_pm.C_LG_XVIII000281
hypothetical protein (613 aa)
     •• 0.811
estExt_fgenesh4_pg.C_LG_X0958
hypothetical protein (587 aa)
     •• 0.809
eugene3.14820001
hypothetical protein (230 aa)
  •     0.481

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query681
TIGR02766475 TIGR02766, crypt_chrom_pln, cryptochrome, plant fa 0.0
COG0415461 COG0415, PhrB, Deoxyribodipyrimidine photolyase [D 1e-110
pfam03441276 pfam03441, FAD_binding_7, FAD binding domain of DN 1e-107
TIGR03556471 TIGR03556, photolyase_8HDF, deoxyribodipyrimidine 2e-72
PRK10674472 PRK10674, PRK10674, deoxyribodipyrimidine photolya 3e-72
pfam00875164 pfam00875, DNA_photolyase, DNA photolyase 3e-47
TIGR02765429 TIGR02765, crypto_DASH, cryptochrome, DASH family 4e-45
pfam12546120 pfam12546, Cryptochrome_C, Blue/Ultraviolet sensin 7e-43
>gnl|CDD|131813 TIGR02766, crypt_chrom_pln, cryptochrome, plant family Back     alignment and domain information 
 Score =  913 bits (2360), Expect = 0.0
 Identities = 401/475 (84%), Positives = 441/475 (92%)

Query: 8   IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
           IVWFRRDLRVEDNPALAA  RAG VI VF+WAPEEEG YYPGRVSRWWLK SL+HLD SL
Sbjct: 1   IVWFRRDLRVEDNPALAAAARAGPVIPVFVWAPEEEGQYYPGRVSRWWLKQSLAHLDQSL 60

Query: 68  RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
           RSLGT LVT RSTD+V++LL+ V++TGAT+LFFNHLYDP+SLVRDHRAKE LTAQGI+V+
Sbjct: 61  RSLGTCLVTIRSTDTVAALLDCVRSTGATRLFFNHLYDPVSLVRDHRAKEVLTAQGISVQ 120

Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
           SFNADLLYEPW+V D  G+PF  FAAFWE+CLSMP+DP++PLLPPK+I SGD+S+C +D 
Sbjct: 121 SFNADLLYEPWEVYDELGRPFTMFAAFWERCLSMPYDPESPLLPPKKIISGDVSKCSADD 180

Query: 188 LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHL 247
           L FED+SEKGSNALLARAWSPGWSNADKALT FINGPL+EYSKNR+KADSATTS LSP+L
Sbjct: 181 LGFEDDSEKGSNALLARAWSPGWSNADKALTEFINGPLLEYSKNRKKADSATTSLLSPYL 240

Query: 248 HFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERP 307
           HFGEVSVRKVFHLVR+KQ++WANEGN AG+ESVNLFL+SIGLREYSRY+SFNHP+SHE+P
Sbjct: 241 HFGEVSVRKVFHLVRMKQIAWANEGNSAGEESVNLFLRSIGLREYSRYISFNHPFSHEKP 300

Query: 308 LLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 367
           LLGHLKFF W VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ
Sbjct: 301 LLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 360

Query: 368 LPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVR 427
           LPWRWGMKYFWDTLLDADLESDALGWQYISG++PDGR  DRIDNPQ EGYKFDPNGEYVR
Sbjct: 361 LPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFDPNGEYVR 420

Query: 428 RWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
           RWLPELARLPTEWIHHPW+APESVLQAAG+ELGSNYP PIV +D A+ RL EALS
Sbjct: 421 RWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYPLPIVGLDEARARLHEALS 475

At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light. Length = 475
>gnl|CDD|223492 COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|217559 pfam03441, FAD_binding_7, FAD binding domain of DNA photolyase Back     alignment and domain information
>gnl|CDD|132595 TIGR03556, photolyase_8HDF, deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>gnl|CDD|236734 PRK10674, PRK10674, deoxyribodipyrimidine photolyase; Provisional Back     alignment and domain information
>gnl|CDD|216167 pfam00875, DNA_photolyase, DNA photolyase Back     alignment and domain information
>gnl|CDD|234002 TIGR02765, crypto_DASH, cryptochrome, DASH family Back     alignment and domain information
>gnl|CDD|221633 pfam12546, Cryptochrome_C, Blue/Ultraviolet sensing protein C terminal Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 681
TIGR02766475 crypt_chrom_pln cryptochrome, plant family. At lea 100.0
COG0415461 PhrB Deoxyribodipyrimidine photolyase [DNA replica 100.0
PRK10674472 deoxyribodipyrimidine photolyase; Provisional 100.0
TIGR03556471 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 100.0
TIGR02765429 crypto_DASH cryptochrome, DASH family. Photolyases 100.0
KOG0133531 consensus Deoxyribodipyrimidine photolyase/cryptoc 100.0
TIGR00591454 phr2 photolyase PhrII. All proteins in this family 100.0
PF03441277 FAD_binding_7: FAD binding domain of DNA photolyas 100.0
COG3046505 Uncharacterized protein related to deoxyribodipyri 100.0
PF00875165 DNA_photolyase: DNA photolyase from Prosite.; Inte 100.0
PF12546121 Cryptochrome_C: Blue/Ultraviolet sensing protein C 99.78
PF04244224 DPRP: Deoxyribodipyrimidine photo-lyase-related pr 98.44
TIGR00289222 conserved hypothetical protein TIGR00289. Homologo 83.83
>TIGR02766 crypt_chrom_pln cryptochrome, plant family Back     alignment and domain information 
Probab=100.00  E-value=8.4e-123  Score=1040.24  Aligned_cols=474  Identities=84%  Similarity=1.462  Sum_probs=412.0

Q ss_pred             EEEEcCCCCCCCCHHHHHHHHcCCeEEEEEEcCCCCCCCCCchhhHHHHHHhHHHHHHHHHhCCCceEEEeCCChHHHHH
Q 005710            8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLL   87 (681)
Q Consensus         8 LvWFRrDLRl~DN~AL~aA~~~~~vlpVfI~dP~~~~~~~~~r~~r~FL~esL~dL~~~L~~~G~~L~v~~~g~~~~~L~   87 (681)
                      ||||||||||+||+||.+|++.++||||||+||.++.....++++++||++||.+|+++|+++|++|+++..|+++++|.
T Consensus         1 l~WFRrDLRl~DN~aL~~A~~~~~vlpvyi~dp~~~~~~~~~~~~~~fl~~sL~~L~~~L~~~G~~L~v~~~g~~~~~l~   80 (475)
T TIGR02766         1 IVWFRRDLRVEDNPALAAAARAGPVIPVFVWAPEEEGQYYPGRVSRWWLKQSLAHLDQSLRSLGTCLVTIRSTDTVAALL   80 (475)
T ss_pred             CEecCCCCCcchHHHHHHHHhCCCEEEEEEechHHhccccccHHHHHHHHHHHHHHHHHHHHcCCceEEEeCCCHHHHHH
Confidence            69999999999999999999877999999999987655556777788999999999999999999999875579999999


Q ss_pred             HHHHHcCCCEEEEecccChhhHHHHHHHHHHHHhCCeEEEEecCCeeeCCcccccccCCcccchHHHHHHHHcCCCCCCC
Q 005710           88 EVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDA  167 (681)
Q Consensus        88 ~L~~~~~~~~V~~n~~y~p~~~~rD~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~~~g~~~~~f~~f~~~~~~~~~~p~~  167 (681)
                      +|+++++|++||+|++|++++..||++|+++|++.||.++.|++++|++|+++.+..|++|++|++||++++..+.++..
T Consensus        81 ~l~~~~~i~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~p~~i~~~~~~~~~~ft~f~~~~~~~~~~~~~  160 (475)
T TIGR02766        81 DCVRSTGATRLFFNHLYDPVSLVRDHRAKEVLTAQGISVQSFNADLLYEPWEVYDELGRPFTMFAAFWERCLSMPYDPES  160 (475)
T ss_pred             HHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHcCCEEEEecCCEEEChhhhcccCCCCCCeecHHHHHHHhccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999988899999999999998876433322


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCccccchhchhhhhcCCCCcCHHHHHHHHHHHhcCcCCcccccccCCCCCCCCCCchhh
Q 005710          168 PLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHL  247 (681)
Q Consensus       168 p~~~p~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~tS~LSPyL  247 (681)
                      +.+.|..+.......++.+++++...............|+|||++|+++|+.|+++++.+|+++||.|+.++||+|||||
T Consensus       161 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~~Y~~~Rd~p~~~~tS~LSPyL  240 (475)
T TIGR02766       161 PLLPPKKIISGDVSKCSADDLGFEDDSEKGSNALLARAWSPGWSNADKALTEFINGPLLEYSKNRKKADSATTSLLSPYL  240 (475)
T ss_pred             CCCCccccCCCccccCChhhcCCCCcccccccccccccCCCccHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCccc
Confidence            23333322211111111223333211000000111234899999999999999999999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccccCCCCcCchhHHHHH
Q 005710          248 HFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAW  327 (681)
Q Consensus       248 ~fG~LSpReV~~~v~~~~~~~~~~~~~~~~~s~~~fl~eL~WREf~~~l~~~~p~~~~~~~~~~~~~~pW~~d~~~~~aW  327 (681)
                      +|||||||+||+++..+......++.....++++.|++||+|||||+++++++|.+...++..+++.++|..+++.|++|
T Consensus       241 ~~G~ISpR~v~~~~~~~~~~~~~~~~~~~~~s~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~f~aW  320 (475)
T TIGR02766       241 HFGEVSVRKVFHLVRMKQIAWANEGNSAGEESVNLFLRSIGLREYSRYISFNHPFSHEKPLLGHLKFFPWAVDENYFKAW  320 (475)
T ss_pred             ccCcccHHHHHHHHHhhhhhhhhcccCCCcccHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhcCCCCCCHHHHHHH
Confidence            99999999999998642211111223344568889999999999999999999987766777777889999999999999


Q ss_pred             hcCCCCCHHHHHHHHHHHHhcchhhHHHHHHHHHHhhccCCCchHHHHHHHHhcccccCCCCccchhhhhcCCCCCCCcc
Q 005710          328 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFD  407 (681)
Q Consensus       328 ~~G~TG~P~VDAaMRqL~~TGwmHnr~Rm~vAsfl~k~L~idWr~G~~~F~~~LlD~D~a~n~g~Wqw~aG~g~d~~~~~  407 (681)
                      ++|+|||||||||||||++|||||||+||||||||||+|+||||+|++||+++|||||+|+|+|||||+||+|+|++|||
T Consensus       321 ~~G~TG~P~VDA~MRqL~~TGwmhnR~Rm~vAsfl~k~L~idWr~G~~~F~~~LiD~D~a~N~g~Wqw~Ag~g~d~~~~~  400 (475)
T TIGR02766       321 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELD  400 (475)
T ss_pred             HcCCCCCcchhHHHHHHHHHCCCcHHHHHHHHHHHHcccCCChHHHHHHHHHHccccchhcccccccccccCCCCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCccccccccCCchhhHHhhchhccCCCCCcccCCCCCChhHHHHhCCccCCCCCCCCcCHHHHHHHHHHHH
Q 005710          408 RIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL  481 (681)
Q Consensus       408 RifNP~~q~~k~Dp~G~yIr~wvPeL~~~p~~~ih~pw~~~~~~~~~~g~~~~~~YP~Pivd~~~~~~~~~~~~  481 (681)
                      |||||++|++||||+|+|||||||||+++|+++||+||+++..+|+++||.+|.+||.|||||+++|+++++++
T Consensus       401 RifnP~~q~~~~Dp~g~yir~wvPeL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~~~~~~  474 (475)
T TIGR02766       401 RIDNPQLEGYKFDPNGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYPLPIVGLDEARARLHEAL  474 (475)
T ss_pred             ccCCHHHHHhhcCCCcccHHHhChhhccCCHHHhcCcccCCHHHHHHcCCccCCCCCcccCCHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999875

At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10674 deoxyribodipyrimidine photolyase; Provisional Back     alignment and domain information
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>TIGR02765 crypto_DASH cryptochrome, DASH family Back     alignment and domain information
>KOG0133 consensus Deoxyribodipyrimidine photolyase/cryptochrome [Replication, recombination and repair; Signal transduction mechanisms] Back     alignment and domain information
>TIGR00591 phr2 photolyase PhrII Back     alignment and domain information
>PF03441 FAD_binding_7: FAD binding domain of DNA photolyase from Prosite Back     alignment and domain information
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only] Back     alignment and domain information
>PF00875 DNA_photolyase: DNA photolyase from Prosite Back     alignment and domain information
>PF12546 Cryptochrome_C: Blue/Ultraviolet sensing protein C terminal; InterPro: IPR020978 Cryptochromes are blue/ultraviolet-A light sensing photoreceptors involved in regulating various growth and developmental responses in plants [] Back     alignment and domain information
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases Back     alignment and domain information
>TIGR00289 conserved hypothetical protein TIGR00289 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query681
1u3c_A509 Crystal Structure Of The Phr Domain Of Cryptochrome 0.0
1dnp_A471 Structure Of Deoxyribodipyrimidine Photolyase Lengt 5e-48
1owl_A484 Structure Of Apophotolyase From Anacystis Nidulans 7e-39
1tez_A474 Complex Between Dna And The Dna Photolyase From Ana 9e-39
1np7_A489 Crystal Structure Analysis Of Synechocystis Sp. Pcc 3e-34
1iqr_A420 Crystal Structure Of Dna Photolyase From Thermus Th 7e-33
3fy4_A537 (6-4) Photolyase Crystal Structure Length = 537 6e-32
2e0i_A440 Crystal Structure Of Archaeal Photolyase From Sulfo 2e-30
3cvx_A543 Drosophila Melanogaster (6-4) Photolyase H369m Muta 1e-27
3cvw_A543 Drosophila Melanogaster (6-4) Photolyase H365n Muta 2e-27
3cvu_A543 Drosophila Melanogaster (6-4) Photolyase Bound To D 3e-27
4gu5_A539 Structure Of Full-Length Drosophila Cryptochrome Le 6e-24
2ijg_X526 Crystal Structure Of Cryptochrome 3 From Arabidopsi 2e-23
2j4d_A525 Cryptochrome 3 From Arabidopsis Thaliana Length = 5 2e-23
2vtb_B525 Structure Of Cryptochrome 3 - Dna Complex Length = 1e-22
>pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From Arabidopsis Thaliana Length = 509 Back     alignment and structure 
Iteration: 1

 Score =  843 bits (2177), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/495 (83%), Positives = 444/495 (89%)
Query: 8   IVWFRRDLRVEDNPXXXXXXXXXXXXXXFIWAPEEEGPYYPGRVSRWWXXXXXXXXXXXX 67
           IVWFRRDLRVEDNP              F+WAPEEEG Y+PGRVSRWW            
Sbjct: 15  IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL 74
Query: 68  XXXGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
              GT L+TKRSTDSV+SLL+VVK+TGA+Q+FFNHLYDPLSLVRDHRAK+ LTAQGIAVR
Sbjct: 75  RSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVR 134
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
           SFNADLLYEPW+V D  G+PF+ FAAFWE+CLSMP+DP++PLLPPK+I SGD+S+C +D 
Sbjct: 135 SFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSKCVADP 194
Query: 188 LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHL 247
           LVFED+SEKGSNALLARAWSPGWSN DKALTTFINGPL+EYSKNRRKADSATTSFLSPHL
Sbjct: 195 LVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPHL 254
Query: 248 HFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERP 307
           HFGEVSVRKVFHLVRIKQV+WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHERP
Sbjct: 255 HFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERP 314
Query: 308 LLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 367
           LLGHLKFF W VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ
Sbjct: 315 LLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 374
Query: 368 LPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVR 427
           LPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVR
Sbjct: 375 LPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVR 434
Query: 428 RWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQ 487
           RWLPEL+RLPT+WIHHPWNAPESVLQAAGIELGSNYP PIV +D AK RL EALS+MWQ 
Sbjct: 435 RWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQL 494
Query: 488 EAASRAAIENGTEEG 502
           EAASRAAIENG+EEG
Sbjct: 495 EAASRAAIENGSEEG 509
>pdb|1DNP|A Chain A, Structure Of Deoxyribodipyrimidine Photolyase Length = 471 Back     alignment and structure
>pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans Length = 484 Back     alignment and structure
>pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis Nidulans Length = 474 Back     alignment and structure
>pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803 Cryptochrome Length = 489 Back     alignment and structure
>pdb|1IQR|A Chain A, Crystal Structure Of Dna Photolyase From Thermus Thermophilus Length = 420 Back     alignment and structure
>pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure Length = 537 Back     alignment and structure
>pdb|2E0I|A Chain A, Crystal Structure Of Archaeal Photolyase From Sulfolobus Tokodaii With Two Fad Molecules: Implication Of A Novel Light-Harvesting Cofactor Length = 440 Back     alignment and structure
>pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant Bound To Ds Dna With A T-T (6-4) Photolesion Length = 543 Back     alignment and structure
>pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant Bound To Ds Dna With A T-T (6-4) Photolesion And Cofactor F0 Length = 543 Back     alignment and structure
>pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna With A T-T (6-4) Photolesion Length = 543 Back     alignment and structure
>pdb|4GU5|A Chain A, Structure Of Full-Length Drosophila Cryptochrome Length = 539 Back     alignment and structure
>pdb|2IJG|X Chain X, Crystal Structure Of Cryptochrome 3 From Arabidopsis Thaliana Length = 526 Back     alignment and structure
>pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana Length = 525 Back     alignment and structure
>pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex Length = 525 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query681
1u3d_A509 Cryptochrome 1 apoprotein; photolyase, AMPPNP, sig 0.0
3tvs_A538 Cryptochrome-1; circadian clock light entrainment, 0.0
3fy4_A537 6-4 photolyase; DNA repair, clock cryptochrome; HE 0.0
1np7_A489 DNA photolyase; protein with FAD cofactor; HET: DN 0.0
2wq7_A543 RE11660P; lyase-DNA complex, DNA repair, DNA lesio 0.0
1owl_A484 Photolyase, deoxyribodipyrimidine photolyase; DNA 1e-153
1dnp_A471 DNA photolyase; DNA repair, electron transfer, exc 1e-150
2j4d_A525 Cryptochrome 3, cryptochrome DASH; DNA-binding pro 1e-147
2e0i_A440 432AA long hypothetical deoxyribodipyrimidine PHO; 1e-137
2j07_A420 Deoxyribodipyrimidine photo-lyase; flavoprotein, n 1e-135
2xry_A482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 1e-113
3umv_A506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 2e-94
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A* Length = 509 Back     alignment and structure
 Score =  722 bits (1865), Expect = 0.0
 Identities = 437/502 (87%), Positives = 473/502 (94%)

Query: 1   MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
               GCSIVWFRRDLRVEDNPALAA VRAG VIA+F+WAPEEEG Y+PGRVSRWWLK+SL
Sbjct: 8   CGSGGCSIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSL 67

Query: 61  SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
           + LDSSLRSLGT L+TKRSTDSV+SLL+VVK+TGA+Q+FFNHLYDPLSLVRDHRAK+ LT
Sbjct: 68  AQLDSSLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLT 127

Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
           AQGIAVRSFNADLLYEPW+V D  G+PF+ FAAFWE+CLSMP+DP++PLLPPK+I SGD+
Sbjct: 128 AQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDV 187

Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
           S+C +D LVFED+SEKGSNALLARAWSPGWSN DKALTTFINGPL+EYSKNRRKADSATT
Sbjct: 188 SKCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATT 247

Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
           SFLSPHLHFGEVSVRKVFHLVRIKQV+WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNH
Sbjct: 248 SFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNH 307

Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
           PYSHERPLLGHLKFF W VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS
Sbjct: 308 PYSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 367

Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
           FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFD
Sbjct: 368 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFD 427

Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
           PNGEYVRRWLPEL+RLPT+WIHHPWNAPESVLQAAGIELGSNYP PIV +D AK RL EA
Sbjct: 428 PNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEA 487

Query: 481 LSEMWQQEAASRAAIENGTEEG 502
           LS+MWQ EAASRAAIENG+EEG
Sbjct: 488 LSQMWQLEAASRAAIENGSEEG 509
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} Length = 537 Back     alignment and structure
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1 Length = 489 Back     alignment and structure
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Length = 543 Back     alignment and structure
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A* Length = 484 Back     alignment and structure
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1 Length = 471 Back     alignment and structure
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B* Length = 525 Back     alignment and structure
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii} Length = 440 Back     alignment and structure
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A* Length = 420 Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Length = 482 Back     alignment and structure
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Length = 506 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query681
1u3d_A509 Cryptochrome 1 apoprotein; photolyase, AMPPNP, sig 100.0
3fy4_A537 6-4 photolyase; DNA repair, clock cryptochrome; HE 100.0
3tvs_A538 Cryptochrome-1; circadian clock light entrainment, 100.0
1np7_A489 DNA photolyase; protein with FAD cofactor; HET: DN 100.0
2wq7_A543 RE11660P; lyase-DNA complex, DNA repair, DNA lesio 100.0
1dnp_A471 DNA photolyase; DNA repair, electron transfer, exc 100.0
1owl_A484 Photolyase, deoxyribodipyrimidine photolyase; DNA 100.0
2e0i_A440 432AA long hypothetical deoxyribodipyrimidine PHO; 100.0
2j4d_A525 Cryptochrome 3, cryptochrome DASH; DNA-binding pro 100.0
2j07_A420 Deoxyribodipyrimidine photo-lyase; flavoprotein, n 100.0
3umv_A506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 100.0
2xry_A482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 100.0
3zxs_A522 Cryptochrome B, rscryb; lyase, cryPro, lumazine, i 100.0
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A* Back     alignment and structure
Probab=100.00  E-value=1e-126  Score=1078.73  Aligned_cols=499  Identities=88%  Similarity=1.481  Sum_probs=431.3

Q ss_pred             CCeEEEEEcCCCCCCCCHHHHHHHHcCCeEEEEEEcCCCCCCCCCchhhHHHHHHhHHHHHHHHHhCCCceEEEeCCChH
Q 005710            4 RGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTKRSTDSV   83 (681)
Q Consensus         4 ~~~~LvWFRrDLRl~DN~AL~aA~~~~~vlpVfI~dP~~~~~~~~~r~~r~FL~esL~dL~~~L~~~G~~L~v~~~g~~~   83 (681)
                      ++++|||||||||++||+||.+|++.++|+||||+||.++..+..++.+++||++||++|+++|+++|++|++++.|++.
T Consensus        11 ~~~~l~WfrrDLRl~DN~aL~~A~~~~~v~pvfi~dp~~~~~~~~~~~~~~fl~~sL~~L~~~L~~~G~~L~v~~~g~~~   90 (509)
T 1u3d_A           11 GGCSIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGTCLITKRSTDSV   90 (509)
T ss_dssp             --CEEEEESSCCCSTTCHHHHHHHHHSCEEEEEEECGGGGTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSCHH
T ss_pred             CCcEEEEECCCCccchhHHHHHHHhCCCEEEEEEECchhcccCCcchHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHH
Confidence            46789999999999999999999988899999999998876656678888899999999999999999999998656899


Q ss_pred             HHHHHHHHHcCCCEEEEecccChhhHHHHHHHHHHHHhCCeEEEEecCCeeeCCcccccccCCcccchHHHHHHHHcCCC
Q 005710           84 SSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPF  163 (681)
Q Consensus        84 ~~L~~L~~~~~~~~V~~n~~y~p~~~~rD~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~~~g~~~~~f~~f~~~~~~~~~  163 (681)
                      ++|.+|+++++|++|++|++|+|+++.||++|+++|++.||+++++++++|++|+++.++.|++|++|++||+++++.++
T Consensus        91 ~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~p~~v~~~~g~~~~vftpf~r~~~~~~~  170 (509)
T 1u3d_A           91 ASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPY  170 (509)
T ss_dssp             HHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGCCCSSSCCCSSHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHcCcEEEEECCCEEEcCCcccCCCCCCchhHHHHHHHHHhccC
Confidence            99999999999999999999999999999999999999999999999999999999999899999999999999988755


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCccccchhchhhhhcCCCCcCHHHHHHHHHHHhcCcCCcccccccCCCCCCCCCC
Q 005710          164 DPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL  243 (681)
Q Consensus       164 ~p~~p~~~p~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~tS~L  243 (681)
                      .|..+.+.|..+++..+...+++++++.+.............|+|||++|+++|++|+++++.+|+++||.|..++||+|
T Consensus       171 ~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~l~~Y~~~Rd~p~~~~tS~L  250 (509)
T 1u3d_A          171 DPESPLLPPKKIISGDVSKCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFL  250 (509)
T ss_dssp             CCCCCCCCCSCCCBTTGGGSSCCCCCCCCHHHHHHHTTHHHHCCCSHHHHHHHHHHHHTTGGGGTTTTTTCSSSTTSCCC
T ss_pred             CCCCCCCCccccCccccCCCChhHhCCCcccccchhhhccccCCCcHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCC
Confidence            44333444433322211112344555443211111111123489999999999999999999999999999999999999


Q ss_pred             chhhhCCCCCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccccCCCCcCchhH
Q 005710          244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGY  323 (681)
Q Consensus       244 SPyL~fG~LSpReV~~~v~~~~~~~~~~~~~~~~~s~~~fl~eL~WREf~~~l~~~~p~~~~~~~~~~~~~~pW~~d~~~  323 (681)
                      ||||||||||||+|++++.+.+..+..++...+.++++.|++||+||||++++++++|.+.+.++.++++.+||..|++.
T Consensus       251 SPyL~~G~LSpR~v~~~~~~~~~~~~~~~~~~~~~s~~~fl~eL~WREf~~~~~~~~p~~~~~~~~~~~~~lpW~~d~~~  330 (509)
T 1u3d_A          251 SPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENY  330 (509)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSSTTTTTSCSCCTTTTCCCCCCHHH
T ss_pred             ChhhccCCCCHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHhCccccccchhhhhccCCCcCChHH
Confidence            99999999999999999976431111122222345789999999999999999999999888888888999999999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHHHHHHhhccCCCchHHHHHHHHhcccccCCCCccchhhhhcCCCCC
Q 005710          324 FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDG  403 (681)
Q Consensus       324 ~~aW~~G~TG~P~VDAaMRqL~~TGwmHnr~Rm~vAsfl~k~L~idWr~G~~~F~~~LlD~D~a~n~g~Wqw~aG~g~d~  403 (681)
                      |++|++|+|||||||||||||++|||||||+||||||||||+|+||||+|++||+++|||||+++|+|||||+||+|+|+
T Consensus       331 ~~aW~~G~TG~P~VDAaMrqL~~tG~mHnr~Rm~vasfl~k~L~idWr~G~~~F~~~liD~D~a~n~g~wqw~ag~g~d~  410 (509)
T 1u3d_A          331 FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDS  410 (509)
T ss_dssp             HHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTCSTTC
T ss_pred             HHHHHcCCCCCHhHHHHHHHHHHhCCccHHHHHHHHHHHHHccCCCchHHHHHHHHHhccCCcccchHHHHHHhcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCccccccccCCchhhHHhhchhccCCCCCcccCCCCCChhHHHHhCCccCCCCCCCCcCHHHHHHHHHHHHHH
Q 005710          404 RAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSE  483 (681)
Q Consensus       404 ~~~~RifNP~~q~~k~Dp~G~yIr~wvPeL~~~p~~~ih~pw~~~~~~~~~~g~~~~~~YP~Pivd~~~~~~~~~~~~~~  483 (681)
                      +||||||||++|++||||+|+|||||||||+++|+++||+||+++..+|+++||.+|.+||.|||||+++|++++++|+.
T Consensus       411 ~py~RifNP~~Q~~kfDp~G~yIrrwvPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~~  490 (509)
T 1u3d_A          411 REFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQ  490 (509)
T ss_dssp             CCSSCCCCHHHHHHHHCTTSHHHHHHCGGGTTCCHHHHTCTTTSCHHHHHHHTCCBTTTBCCCSSCHHHHHHHHHHHHHH
T ss_pred             CccccccCHHHHHHhcCCCchhHHHhCHHhhccccccccCcccCChHHHHHhccccCCCCCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCccc
Q 005710          484 MWQQEAASRAAIENGTEEG  502 (681)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~  502 (681)
                      +++..++.+|+..+|.+||
T Consensus       491 ~~~~~~~~~~~~~~~~~~~  509 (509)
T 1u3d_A          491 MWQLEAASRAAIENGSEEG  509 (509)
T ss_dssp             HHHHHCC------------
T ss_pred             HHhhHHHHHHHhhcCccCC
Confidence            9999999999999998875
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} Back     alignment and structure
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1 Back     alignment and structure
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Back     alignment and structure
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1 Back     alignment and structure
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A* Back     alignment and structure
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii} Back     alignment and structure
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B* Back     alignment and structure
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A* Back     alignment and structure
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Back     alignment and structure
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 681
d1u3da1300 a.99.1.1 (A:198-497) Cryptochrome C-terminal domai 6e-81
d1dnpa1269 a.99.1.1 (A:201-469) C-terminal domain of DNA phot 4e-52
d1np7a1279 a.99.1.1 (A:205-483) Cryptochrome C-terminal domai 2e-48
d1u3da2185 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Ara 2e-45
d1owla1271 a.99.1.1 (A:205-475) C-terminal domain of DNA phot 4e-45
d2j07a1234 a.99.1.1 (A:172-405) C-terminal domain of DNA phot 3e-40
d1dnpa2200 c.28.1.1 (A:1-200) DNA photolyase {Escherichia col 2e-25
d1np7a2204 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp. 8e-22
d1owla2202 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus e 1e-21
d2j07a2170 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermop 1e-19
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 300 Back     information, alignment and structure

class: All alpha proteins
fold: Cryptochrome/photolyase FAD-binding domain
superfamily: Cryptochrome/photolyase FAD-binding domain
family: Cryptochrome/photolyase FAD-binding domain
domain: Cryptochrome C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  257 bits (656), Expect = 6e-81
 Identities = 276/300 (92%), Positives = 288/300 (96%)

Query: 191 EDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFG 250
           ED+SEKGSNALLARAWSPGWSN DKALTTFINGPL+EYSKNRRKADSATTSFLSPHLHFG
Sbjct: 1   EDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPHLHFG 60

Query: 251 EVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLG 310
           EVSVRKVFHLVRIKQV+WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHERPLLG
Sbjct: 61  EVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLG 120

Query: 311 HLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPW 370
           HLKFF W VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPW
Sbjct: 121 HLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPW 180

Query: 371 RWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWL 430
           RWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVRRWL
Sbjct: 181 RWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWL 240

Query: 431 PELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAA 490
           PEL+RLPT+WIHHPWNAPESVLQAAGIELGSNYP PIV +D AK RL EALS+MWQ EAA
Sbjct: 241 PELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQLEAA 300
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase {Escherichia coli [TaxId: 562]} Length = 269 Back     information, alignment and structure
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain {Synechocystis sp., pcc 6803 [TaxId: 1143]} Length = 279 Back     information, alignment and structure
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 185 Back     information, alignment and structure
>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Length = 271 Back     information, alignment and structure
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase {Thermus thermophilus [TaxId: 274]} Length = 234 Back     information, alignment and structure
>d1dnpa2 c.28.1.1 (A:1-200) DNA photolyase {Escherichia coli [TaxId: 562]} Length = 200 Back     information, alignment and structure
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Length = 204 Back     information, alignment and structure
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Length = 202 Back     information, alignment and structure
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]} Length = 170 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query681
d1u3da1300 Cryptochrome C-terminal domain {Thale cress (Arabi 100.0
d1np7a1279 Cryptochrome C-terminal domain {Synechocystis sp., 100.0
d1dnpa1269 C-terminal domain of DNA photolyase {Escherichia c 100.0
d1owla1271 C-terminal domain of DNA photolyase {Synechococcus 100.0
d2j07a1234 C-terminal domain of DNA photolyase {Thermus therm 100.0
d1u3da2185 Cryptochrome {Thale cress (Arabidopsis thaliana) [ 100.0
d1np7a2204 Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 100.0
d1owla2202 DNA photolyase {Synechococcus elongatus [TaxId: 32 100.0
d1dnpa2200 DNA photolyase {Escherichia coli [TaxId: 562]} 100.0
d2j07a2170 DNA photolyase {Thermus thermophilus [TaxId: 274]} 99.98
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All alpha proteins
fold: Cryptochrome/photolyase FAD-binding domain
superfamily: Cryptochrome/photolyase FAD-binding domain
family: Cryptochrome/photolyase FAD-binding domain
domain: Cryptochrome C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.5e-88  Score=714.17  Aligned_cols=295  Identities=92%  Similarity=1.563  Sum_probs=275.7

Q ss_pred             hhchhhhhcCCCCcCHHHHHHHHHHHhcCcCCcccccccCCCCCCCCCCchhhhCCCCCHHHHHHHHHHHHhhhhhcCCC
Q 005710          195 EKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNK  274 (681)
Q Consensus       195 ~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~tS~LSPyL~fG~LSpReV~~~v~~~~~~~~~~~~~  274 (681)
                      ++.+++++...|++||.+|+++|+.||++++.+|.+.||.|+.++||+|||||+|||||||+|++.++.+......++..
T Consensus         5 ~~~~~~~~~~~W~pGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~tSrLSPyL~~G~IS~ReV~~~v~~~~~~~~~~~~~   84 (300)
T d1u3da1           5 EKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNE   84 (300)
T ss_dssp             HHHHHTTHHHHCCCSHHHHHHHHHHHHTTGGGGTTTTTTCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             hhhhHHHHhCcCCccHHHHHHHHHHHHHhhHHHHhhhcCCCCccCCccccHHHcCCCCCHHHHHHHHHHHHHhhhhhccc
Confidence            44566666677999999999999999999999999999999999999999999999999999999997655333333333


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccccCCCCcCchhHHHHHhcCCCCCHHHHHHHHHHHHhcchhhHH
Q 005710          275 AGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI  354 (681)
Q Consensus       275 ~~~~s~~~fl~eL~WREf~~~l~~~~p~~~~~~~~~~~~~~pW~~d~~~~~aW~~G~TG~P~VDAaMRqL~~TGwmHnr~  354 (681)
                      ....+++.|++||+||||++++++++|.....++.+.++.++|..|++.+++|++|+|||||||||||||++||||||||
T Consensus        85 ~~~~~~~~fi~eL~wRef~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~w~~G~TG~p~vDA~mr~L~~tG~mhnr~  164 (300)
T d1u3da1          85 AGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI  164 (300)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSTTTTTSCSCCTTTTCCCCCCHHHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhhhccccccCHHHHHHHHhhcccchHHHHHHHHHHhhchhHHHH
Confidence            44557889999999999999999999988777888878888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCCCchHHHHHHHHhcccccCCCCccchhhhhcCCCCCCCcccccCccccccccCCchhhHHhhchhcc
Q 005710          355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELA  434 (681)
Q Consensus       355 Rm~vAsfl~k~L~idWr~G~~~F~~~LlD~D~a~n~g~Wqw~aG~g~d~~~~~RifNP~~q~~k~Dp~G~yIr~wvPeL~  434 (681)
                      |||||||||++|+|||+.|++||+++|||||+++|++||||+||+|+|+++|+|||||++|+++|||+|+|||+|||||+
T Consensus       165 Rm~vaSfl~~~L~i~W~~ga~~f~~~l~D~d~a~n~~~wq~~ag~g~~~~~~~ri~np~~q~~~~Dp~g~fir~wvPEL~  244 (300)
T d1u3da1         165 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELS  244 (300)
T ss_dssp             HHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTCSTTCCCSSCCCCHHHHHHHHCTTSHHHHHHCGGGT
T ss_pred             HHHHHHHHHHHcccchhhHHHHHHHHHhccchhhHHHHHHHHHhcccchhhccccccHHHHHHHhcCcchHHHHhChhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccCCCCCChhHHHHhCCccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH
Q 005710          435 RLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEA  489 (681)
Q Consensus       435 ~~p~~~ih~pw~~~~~~~~~~g~~~~~~YP~Pivd~~~~~~~~~~~~~~~~~~~~  489 (681)
                      ++|.++||+||++|..+|+.+||.+|.+||.||||++++|+|++++++++|++++
T Consensus       245 ~~p~~~ih~Pw~~~~~~~~~~~~~~g~~Yp~pivd~~~~~~r~~~~~~~~~~~~~  299 (300)
T d1u3da1         245 RLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQLEA  299 (300)
T ss_dssp             TCCHHHHTCTTTSCHHHHHHHTCCBTTTBCCCSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHhCCcccCCHHHHHHcCCccCCCCCcccCCHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999875
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d1dnpa2 c.28.1.1 (A:1-200) DNA photolyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure