Citrus Sinensis ID: 005784

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------
MANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGERNYDKPPRVKMGDKEDSYDIRRDTYQGGSRSPISDGDSKLEGRSPEQPKDPESSSPPVVRPVREILGDNVLPLRISEPPKANGVRVADGSTNTQRTASSGNLGSANENQAEVKLETTGSLIDFDADPKPSPAVAQAQQKTVAQSVVQPASSANDNNWASFDLAPQVKVSQTSSNLNTLETVFSQLSVPASVPGQVSGIPSGAGAPVIAPATNVNVLPGGGSPVASVGHTPFSVFSAAAPAAPAVSGFATFPSANAPAPAPGVTPLLPVSVNAGNSFSMQHQPPLFPTAGGQFTASQFTPPVAGSSNNQQWNTSLAQNAQGPPAAQPAQSVPKPALESASGGLSQPSPVEVKSTGRTALPEDLFTANYSSFPASVPGWQTVPPHGMVYAMQYNTAAPMPNFVHSKSTTNPFDVNNDSHPVQAQTFPSMASLQGALPNVSHPPGLLRTSSLTPSPAWMPPQASPYPSAMPSQMPTYAAAIPSQMPTHAPAMPPRPYLGPQVPSNVPPSGHQGMGGLGSEGASFGFMNPDPQLAGRLSASATPQAFTSVGGNPFG
cccHHHHHHHHHHHHHHHHcccccccccccccccccEEEEcccEEEccccHHHHccccccEEEEEcccccHHHHHHHHHHcHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEEEEEEcccHHHcHccEEEEEEcccccHHHHHHHHHHcHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
manrlkedekNERIIRGLLklqdnrrcincnslgtqyvctNFWTFvctncsgihrefTHRVKSVSMAKFTSQEVKALQEGGNQRAKEVLLkewdpqrqsfpdssnvERLRNFIKHVyvdrrytgernydkpprvkmgdkedsydirrdtyqggsrspisdgdsklegrspeqpkdpesssppvvrpvreilgdnvlplriseppkangvrvadgstntqrtassgnlgsanenqAEVKLEttgslidfdadpkpspavAQAQQKTVAQSvvqpassandnnwasfdlapqvkvsqtssnlnTLETVFSQlsvpasvpgqvsgipsgagapviapatnvnvlpgggspvasvghtpfsvfsaaapaapavsgfatfpsanapapapgvtpllpvsvnagnsfsmqhqpplfptaggqftasqftppvagssnnqqWNTSLaqnaqgppaaqpaqsvpkpalesasgglsqpspvevkstgrtalpedlftanyssfpasvpgwqtvpphgmVYAMqyntaapmpnfvhsksttnpfdvnndshpvqaqtfpsmaslqgalpnvshppgllrtssltpspawmppqaspypsampsqmptyaaaipsqmpthapampprpylgpqvpsnvppsghqgmgglgsegasfgfmnpdpqlagrlsasatpqaftsvggnpfg
manrlkedekneriirgllklqdnrrcINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVKALQEGGNQRAKEVllkewdpqrqsfpdssnverlrnfikhvyvdrrytgernydkpprvkmgdkedsydirrdtyqggsrspisdgdsklEGRSpeqpkdpesssppvvrpvREILGdnvlplriseppkangvrvadgstntqrtassgnlgsanenQAEVKLETTGSLIDFDADPKPSPAVAQAQQKTVAQSVVQPASSANDNNWASFDLAPQVKVSQTSSNLNTLETVFSQLSVPASVPGQVSGIPSGAGAPVIAPATNVNVLPGGGSPVASVGHTPFSVFSAAAPAAPAVSGFATFPSANAPAPAPGVTPLLPVSVNAGNSFSMQHQPPLFPTAGGQFTASQFTPPVAGSSNNQQWNTSLAQNAQGPPAAQPAQSVPKPALESASGGLSQPSPVEVKSTGRTALPEDLFTANYSSFPASVPGWQTVPPHGMVYAMQYNTAAPMPNFVHSKSTTNPFDVNNDSHPVQAQTFPSMASLQGALPNVSHPPGLLRTSSLTPSPAWMPPQASPYPSAMPSQMPTYAAAIPSQMPTHAPAMPPRPYLGPQVPSNVPPSGHQGMGGLGSEGASFGFMNPDPQLAGRLSasatpqaftsvggnpfg
MANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGERNYDKPPRVKMGDKEDSYDIRRDTYQGGSRSPISDGDSKLEGRSPEQPKDpesssppvvrpvreILGDNVLPLRISEPPKANGVRVADGSTNTQRTASSGNLGSANENQAEVKLETTGSLIDFDADPKPSPavaqaqqktvaqsvvqPASSANDNNWASFDLAPQVKVSQTSSNLNTLETVFSQLSVPASVPGQVSGIPSGAGAPVIAPATNVNVLPGGGSPVASVGHTpfsvfsaaapaapavsgfaTFPSANAPAPAPGVTPLLPVSVNAGNSFSMQHQPPLFPTAGGQFTASQFTPPVAGSSNNQQWNTSLaqnaqgppaaqpaqsvpkpaLESASGGLSQPSPVEVKSTGRTALPEDLFTANYSSFPASVPGWQTVPPHGMVYAMQYNTAAPMPNFVHSKSTTNPFDVNNDSHPVQAQTFPSMASLQGALPNVSHPPGLLRTSSLTPSPAWMPPQASPYPSAMPSQMPTYAAAIPSQMPTHAPAMPPRPYLGPQVPSNVPPSGHQGMGGLGSEGASFGFMNPDPQLAGRLSASATPQAFTSVGGNPFG
*************IIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSM*****************************************RLRNFIKHVYVDRRYT*************************************************************************************************************************************************************************************TVF**********************PVIAPATNVNVLPGG***VASVGHTPFSVFS******************************************************************************************************************************LFTANYSSFPASVPGWQTVPPHGMVYAMQYNTAA*************************************************************************************************************************************************************
****************GLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQR*********ERLRNFIKHVYVDRRYT**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************NP**
********EKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGERNYDKPPRVKMGDKEDSYDIRRDTYQ*******************************VVRPVREILGDNVLPLRISEPPKANGVRVADGSTNTQRTASSGNLGSANENQAEVKLETTGSLIDFDADP************************ANDNNWASFDLAPQVKVSQTSSNLNTLETVFSQLSVPASVPGQVSGIPSGAGAPVIAPATNVNVLPGGGSPVASVGHTPFSVFSAAAPAAPAVSGFATFPSANAPAPAPGVTPLLPVSVNAGNSFSMQHQPPLFPTAGGQFTASQFTPPVAGSSNNQQWNTSLA*************************************TGRTALPEDLFTANYSSFPASVPGWQTVPPHGMVYAMQYNTAAPMPNFVHSKSTTNPFDVNNDSHPVQAQTFPSMASLQGALPNVSHPPGLLRTSSLTPSPAWMPPQASPYPSAMPSQMPTYAAAIPSQMPTHAPAMPPRPYLGPQVPSNVPPSGHQGMGGLGSEGASFGFMNPDPQLAGRLSASATPQAFT********
*******DEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTG***********************************************************************LPLR****PK**************************************************************************************************************************************************************************************************************************************************************************************PEDLFTANYSSFPASVPGWQTVPPHGMVYAMQYNTAAPMPNFVHSKSTTNPFDVNNDSHPVQAQTFPSMASLQGALPNVSHPPGLLRTSSLTPSPAWMPPQASPYPSAMPSQMPTYAAAIPSQMPTHAPAMPPRPYLGPQVPSNVPPSGHQGMGGLGSEGASFGFMNPDPQLAG********************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGERNYDKPPRVKMGDKEDSYDIRRDTYQGGSRSPISDGDSKLEGRSPEQPKDPESSSPPVVRPVREILGDNVLPLRISEPPKANGVRVADGSTNTQRTASSGNLGSANENQAEVKLETTGSLIDFDADPKPSPAVAQAQQKTVAQSVVQPASSANDNNWASFDLAPQVKVSQTSSNLNTLETVFSQLSVPASVPGQVSGIPSGAGAPVIAPATNVNVLPGGGSPVASVGHTPFSVFSAAAPAAPAVSGFATFPSANAPAPAPGVTPLLPVSVNAGNSFSMQHQPPLFPTAGGQFTASQFTPPVAGSSNNQQWNTSLAQNAQGPPAAQPAQSVPKPALESASGGLSQPSPVEVKSTGRTALPEDLFTANYSSFPASVPGWQTVPPHGMVYAMQYNTAAPMPNFVHSKSTTNPFDVNNDSHPVQAQTFPSMASLQGALPNVSHPPGLLRTSSLTPSPAWMPPQASPYPSAMPSQMPTYAAAIPSQMPTHAPAMPPRPYLGPQVPSNVPPSGHQGMGGLGSEGASFGFMNPDPQLAGRLSASATPQAFTSVGGNPFG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query677 2.2.26 [Sep-21-2011]
Q8RXE7649 Probable ADP-ribosylation no no 0.234 0.244 0.611 4e-55
Q8K2K6561 Arf-GAP domain and FG rep yes no 0.175 0.212 0.355 6e-22
Q4KLH5561 Arf-GAP domain and FG rep yes no 0.175 0.212 0.355 7e-22
Q2TA45562 Arf-GAP domain and FG rep yes no 0.175 0.211 0.355 7e-22
P52594562 Arf-GAP domain and FG rep yes no 0.175 0.211 0.355 7e-22
O95081481 Arf-GAP domain and FG rep no no 0.497 0.700 0.274 2e-18
Q80WC7479 Arf-GAP domain and FG rep no no 0.205 0.290 0.321 3e-17
Q8WU79429 Stromal membrane-associat no no 0.267 0.421 0.272 1e-14
Q7TN29428 Stromal membrane-associat no no 0.267 0.422 0.267 5e-14
Q5F413428 Stromal membrane-associat no no 0.267 0.422 0.256 5e-14
>sp|Q8RXE7|AGD14_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD14 OS=Arabidopsis thaliana GN=AGD14 PE=1 SV=2 Back     alignment and function desciption
 Score =  216 bits (551), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 99/162 (61%), Positives = 121/162 (74%), Gaps = 3/162 (1%)

Query: 1   MANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHR 60
           M    +E+E+NE+IIRGL+KL  NRRCINCNSLG QYVCT FWTFVC  CSGIHREFTHR
Sbjct: 1   MMGSKREEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREFTHR 60

Query: 61  VKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDR 120
           VKSVSM+KFTS+EV+ LQ GGNQRA+E+ LK WD QRQ  P++SN ER+R FIK+VYV +
Sbjct: 61  VKSVSMSKFTSKEVEVLQNGGNQRAREIYLKNWDHQRQRLPENSNAERVREFIKNVYVQK 120

Query: 121 RYTGERNYDKPPRVKMGDKEDSYDIRR--DTYQGGSRSPISD 160
           +Y G  + DKP +    D   S D+ R  ++Y   S+SP  D
Sbjct: 121 KYAGANDADKPSKDSQ-DHVSSEDMTRRANSYHSYSQSPPYD 161
GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).
Arabidopsis thaliana (taxid: 3702)
>sp|Q8K2K6|AGFG1_MOUSE Arf-GAP domain and FG repeat-containing protein 1 OS=Mus musculus GN=Agfg1 PE=1 SV=2 Back     alignment and function description
>sp|Q4KLH5|AGFG1_RAT Arf-GAP domain and FG repeat-containing protein 1 OS=Rattus norvegicus GN=Agfg1 PE=1 SV=1 Back     alignment and function description
>sp|Q2TA45|AGFG1_BOVIN Arf-GAP domain and FG repeat-containing protein 1 OS=Bos taurus GN=AGFG1 PE=2 SV=1 Back     alignment and function description
>sp|P52594|AGFG1_HUMAN Arf-GAP domain and FG repeat-containing protein 1 OS=Homo sapiens GN=AGFG1 PE=1 SV=2 Back     alignment and function description
>sp|O95081|AGFG2_HUMAN Arf-GAP domain and FG repeat-containing protein 2 OS=Homo sapiens GN=AGFG2 PE=1 SV=2 Back     alignment and function description
>sp|Q80WC7|AGFG2_MOUSE Arf-GAP domain and FG repeat-containing protein 2 OS=Mus musculus GN=Agfg2 PE=1 SV=1 Back     alignment and function description
>sp|Q8WU79|SMAP2_HUMAN Stromal membrane-associated protein 2 OS=Homo sapiens GN=SMAP2 PE=1 SV=1 Back     alignment and function description
>sp|Q7TN29|SMAP2_MOUSE Stromal membrane-associated protein 2 OS=Mus musculus GN=Smap2 PE=1 SV=1 Back     alignment and function description
>sp|Q5F413|SMAP2_CHICK Stromal membrane-associated protein 2 OS=Gallus gallus GN=SMAP2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query677
359484370759 PREDICTED: uncharacterized protein LOC10 0.989 0.882 0.566 0.0
356529609674 PREDICTED: uncharacterized protein LOC10 0.929 0.933 0.531 0.0
356527795691 PREDICTED: uncharacterized protein LOC10 0.933 0.914 0.502 1e-175
297743304734 unnamed protein product [Vitis vinifera] 0.945 0.871 0.487 1e-172
356511345687 PREDICTED: uncharacterized protein LOC10 0.936 0.922 0.502 1e-171
225442683740 PREDICTED: probable ADP-ribosylation fac 0.945 0.864 0.473 1e-164
357500413698 Arf-GAP domain and FG repeats-containing 0.903 0.876 0.462 1e-159
357500517658 Arf-GAP domain and FG repeats-containing 0.828 0.852 0.435 1e-140
449443317630 PREDICTED: uncharacterized protein LOC10 0.911 0.979 0.476 1e-139
224142117649 predicted protein [Populus trichocarpa] 0.905 0.944 0.460 1e-129
>gi|359484370|ref|XP_002281316.2| PREDICTED: uncharacterized protein LOC100249171 [Vitis vinifera] gi|297738855|emb|CBI28100.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/766 (56%), Positives = 496/766 (64%), Gaps = 96/766 (12%)

Query: 1   MANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHR 60
           MANR+KEDEKNERIIRGLLKL +NRRCINCNSLG QYVCTNFWTFVCT CSGIHREFTHR
Sbjct: 1   MANRMKEDEKNERIIRGLLKLPENRRCINCNSLGPQYVCTNFWTFVCTTCSGIHREFTHR 60

Query: 61  VKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDR 120
           VKSVSMAKFTSQEV +LQ GGN+R KE   KEWDPQR SFPDSSN+ERLR+FIKHVYVDR
Sbjct: 61  VKSVSMAKFTSQEVSSLQRGGNERVKEFYFKEWDPQRHSFPDSSNIERLRDFIKHVYVDR 120

Query: 121 RYTGERNYDKPPRVKMGDK---------------------EDSYDIR------------- 146
           RY+GER++DKPPRVKMGDK                     EDSYD R             
Sbjct: 121 RYSGERSFDKPPRVKMGDKEEPYENRKMDNYQGGSRSPPYEDSYDRRYSDQRSPGGRSDD 180

Query: 147 ---RDTYQG----GS-----------RSPI-------------------SDGDSKLEGRS 169
              R  Y G    GS           RSP+                   SD ++  EGRS
Sbjct: 181 KNFRYGYDGRRSPGSDLENRQHGDYRRSPVRPEIVNDWRREDRFGNGRKSDRETNREGRS 240

Query: 170 PEQPKDPESSSPPVVRPVREILGDNVLPLRISEPPKANGVRVADGSTNTQRTASSGNLGS 229
           P+  KD ++SSPP+VRPVREILGDNV PLR+ EPPKANG RV DG   TQRTASS +LGS
Sbjct: 241 PDHQKDLDASSPPMVRPVREILGDNVSPLRVIEPPKANGGRVGDGFARTQRTASSSSLGS 300

Query: 230 ANENQAEVKLETTGSLIDFDADPKPSPA--VAQAQQKTVAQSVVQPASSANDNNWASFDL 287
           +N N  E+K E +G LIDFDADP+P  A  V Q QQ  V Q++ QP SS+ND NWASFD 
Sbjct: 301 SNGNPGELKRENSGILIDFDADPEPPVAATVPQTQQPPV-QTIAQPISSSND-NWASFDF 358

Query: 288 APQVKVSQTSSNLNTLETVFSQLSVPASVPGQVSGIPSGAGAPVIAPATNVNVLP-GGGS 346
           A + KVSQ  SN+N LETV SQLSVPASVPG  SG+P+  GAP   P  NV+VLP  G S
Sbjct: 359 ATEAKVSQAPSNVNALETVLSQLSVPASVPGHGSGVPNSGGAPTAVPVGNVSVLPMSGDS 418

Query: 347 PVASVGHTPFSVFSAAAPAAPAVSGFATFPSANAPAPAPGVTPLLPVSVNAGNSF----- 401
               V   P S F   APA   V+ FA FP A A A APG+TP+L    + GNSF     
Sbjct: 419 LFPPVRPIPTSPFLGGAPA--PVNTFAAFPPAAAAAAAPGLTPML--HGHDGNSFVKVTG 474

Query: 402 -----SMQHQP-PLFPTAGGQFTASQFTPPVAGSSNNQQWNTSLAQNAQGP---PAAQPA 452
                SMQ+Q   LFP  G Q  A QF P V G+S NQQWN+ L  N QGP   PAAQ  
Sbjct: 475 AGQWPSMQYQQHSLFPDTGSQSIAQQFAPSVGGTSTNQQWNSPLLPNTQGPFSAPAAQAP 534

Query: 453 QSVPKPALESASGGLSQPSPVEVKSTGRTALPEDLFTANYSSFPASVPGWQTVPPHGMVY 512
           Q+V KP +  AS   S P PVEVK  GR  LP DLF A Y      VPGWQT PPHGM +
Sbjct: 535 QTVSKPQV-VASSLSSPPLPVEVKPAGRKELPLDLFAATYQPISMQVPGWQTGPPHGMGF 593

Query: 513 AMQYNTAAPMPN-FVHSKSTTNPFDVNNDSHPVQAQTFPSMASLQGALPNVSHPPGLLRT 571
            +QYNTAAP+P+ F HS  +TNPFD+NN+  P QA TFPSMASLQG+LPN+    GLL +
Sbjct: 594 HLQYNTAAPLPSTFSHSSKSTNPFDLNNEPPPAQAPTFPSMASLQGSLPNMPPSMGLLHS 653

Query: 572 SSLTPSPAWMPPQASPYPSAMPSQMPTYAAAIPSQMPTHAPAMPPRPYLGPQVPSNVPPS 631
           SS      W PPQ+S YP AMP Q P Y + +P Q+P +A  MPPR Y+G QVP  +PPS
Sbjct: 654 SSAGTQSTWTPPQSSLYPLAMPPQAPPYVSGMPPQVPPYASGMPPRAYMGQQVPGAIPPS 713

Query: 632 GHQGMGGLGSEGASFGFMNPDPQLAGRLSASATPQAFTSVGGNPFG 677
            HQG+G  GSE A+F  +NP+  + GR SA A     +SVGGNPFG
Sbjct: 714 SHQGVGSFGSEDAAFSSLNPNHLIGGRSSAPAALDKLSSVGGNPFG 759

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356529609|ref|XP_003533382.1| PREDICTED: uncharacterized protein LOC100817254 [Glycine max] Back     alignment and taxonomy information
>gi|356527795|ref|XP_003532492.1| PREDICTED: uncharacterized protein LOC100815114 [Glycine max] Back     alignment and taxonomy information
>gi|297743304|emb|CBI36171.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356511345|ref|XP_003524387.1| PREDICTED: uncharacterized protein LOC100781002 [Glycine max] Back     alignment and taxonomy information
>gi|225442683|ref|XP_002280037.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357500413|ref|XP_003620495.1| Arf-GAP domain and FG repeats-containing protein [Medicago truncatula] gi|355495510|gb|AES76713.1| Arf-GAP domain and FG repeats-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|357500517|ref|XP_003620547.1| Arf-GAP domain and FG repeats-containing protein [Medicago truncatula] gi|355495562|gb|AES76765.1| Arf-GAP domain and FG repeats-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|449443317|ref|XP_004139426.1| PREDICTED: uncharacterized protein LOC101209764 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224142117|ref|XP_002324405.1| predicted protein [Populus trichocarpa] gi|222865839|gb|EEF02970.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query677
TAIR|locus:2142115602 NIG "NSP (nuclear shuttle prot 0.257 0.289 0.643 8.1e-87
TAIR|locus:2125697628 AT4G32630 [Arabidopsis thalian 0.239 0.257 0.572 3e-75
UNIPROTKB|B8ZZY2541 AGFG1 "Arf-GAP domain and FG r 0.172 0.216 0.361 1.1e-21
MGI|MGI:1333754561 Agfg1 "ArfGAP with FG repeats 0.172 0.208 0.361 1.2e-20
UNIPROTKB|P52594562 AGFG1 "Arf-GAP domain and FG r 0.172 0.208 0.361 1.2e-20
UNIPROTKB|Q2TA45562 AGFG1 "Arf-GAP domain and FG r 0.172 0.208 0.361 2.4e-20
RGD|1560041560 Agfg1 "ArfGAP with FG repeats 0.172 0.208 0.361 1.6e-19
RGD|1310527561 Agfg1-ps1 "ArfGAP with FG repe 0.172 0.208 0.361 1.6e-19
ASPGD|ASPL0000049357565 AN1931 [Emericella nidulans (t 0.183 0.219 0.306 1.9e-19
UNIPROTKB|D4A4Q8529 Agfg1 "Arf-GAP domain and FG r 0.172 0.221 0.361 2.8e-19
TAIR|locus:2142115 NIG "NSP (nuclear shuttle protein)-interacting GTPase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 581 (209.6 bits), Expect = 8.1e-87, Sum P(2) = 8.1e-87
 Identities = 119/185 (64%), Positives = 138/185 (74%)

Query:     1 MANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHR 60
             MA R+KEDEKNE+IIR LLKL +N+RCINCNSLG QYVCT FWTFVCTNCSGIHREFTHR
Sbjct:     1 MAGRVKEDEKNEKIIRSLLKLPENKRCINCNSLGPQYVCTTFWTFVCTNCSGIHREFTHR 60

Query:    61 VKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDR 120
             VKS+SMAKFTSQEV AL+EGGNQ AK++  K  D QRQS PD SNVERLR+FI+HVYV++
Sbjct:    61 VKSISMAKFTSQEVTALKEGGNQHAKDIYFKGLDQQRQSVPDGSNVERLRDFIRHVYVNK 120

Query:   121 RYTGERNYDKPP---RVKMGDK----EDSYDIRR-DTYQGGSRSPISDGDSK--LEGR-S 169
             RYT E+N DK P   R   G +    ED YD R  D    G RSP  +  S+  +  R S
Sbjct:   121 RYTNEKNDDKSPSETRSSSGSRSPPYEDGYDRRYGDRSSPGGRSPGFETGSRNAVNNRKS 180

Query:   170 PEQPK 174
             P +P+
Sbjct:   181 PARPE 185
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0008060 "ARF GTPase activator activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0032312 "regulation of ARF GTPase activity" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0003924 "GTPase activity" evidence=IDA
GO:0005525 "GTP binding" evidence=IDA
GO:0006913 "nucleocytoplasmic transport" evidence=IDA
GO:0009615 "response to virus" evidence=IMP
TAIR|locus:2125697 AT4G32630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|B8ZZY2 AGFG1 "Arf-GAP domain and FG repeat-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1333754 Agfg1 "ArfGAP with FG repeats 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P52594 AGFG1 "Arf-GAP domain and FG repeat-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TA45 AGFG1 "Arf-GAP domain and FG repeat-containing protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1560041 Agfg1 "ArfGAP with FG repeats 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1310527 Agfg1-ps1 "ArfGAP with FG repeats 1, pseudogene 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ASPGD|ASPL0000049357 AN1931 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|D4A4Q8 Agfg1 "Arf-GAP domain and FG repeat-containing protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query677
PLN03131705 PLN03131, PLN03131, hypothetical protein; Provisio 1e-53
PLN03119648 PLN03119, PLN03119, putative ADP-ribosylation fact 1e-47
pfam01412117 pfam01412, ArfGap, Putative GTPase activating prot 1e-40
smart00105119 smart00105, ArfGap, Putative GTP-ase activating pr 1e-20
COG5347319 COG5347, COG5347, GTPase-activating protein that r 5e-13
PLN03114395 PLN03114, PLN03114, ADP-ribosylation factor GTPase 6e-05
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 0.002
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 0.004
PRK07764 824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.004
>gnl|CDD|178677 PLN03131, PLN03131, hypothetical protein; Provisional Back     alignment and domain information 
 Score =  195 bits (497), Expect = 1e-53
 Identities = 205/719 (28%), Positives = 300/719 (41%), Gaps = 126/719 (17%)

Query: 6   KEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVS 65
           KE+E+NE+IIRGL+KL  NRRCINCNSLG Q+VCTNFWTF+C  CSGIHREFTHRVKSVS
Sbjct: 5   KEEERNEKIIRGLMKLPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIHREFTHRVKSVS 64

Query: 66  MAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGE 125
           M+KFTSQ+V+ALQ GGNQRA+E+ LK+WD QRQ  PD+S V+++R FIK +YVD++Y G 
Sbjct: 65  MSKFTSQDVEALQNGGNQRAREIYLKDWDQQRQRLPDNSKVDKIREFIKDIYVDKKYAGG 124

Query: 126 RNYDKPPR--VKMGDKEDSYDIRRDTYQGGSRSPISD---GDSKLEGRSPEQPKDPESS- 179
           + +DKPPR   ++   ED    R  +Y   S+SP  D    D +   ++    + P S  
Sbjct: 125 KTHDKPPRDLQRIRSHEDETR-RACSYHSYSQSPPYDFQYEDRRYGKQAGILTRKPGSDR 183

Query: 180 -------SPPVVRPVREILGDNVLPLRISEPPKANGV---RVADGSTNTQRTASSGNLGS 229
                  +  +  P R  L D +   R +     +GV    V+ G    +  A S N   
Sbjct: 184 GLNVGKMASFICSPTR--LNDRMFEDRFANEGSVSGVSDYSVSSGGDLVRSGAESPNF-- 239

Query: 230 ANENQAEVKLETTGSLIDFDADPKPSPAVAQAQQKTVAQSVVQPASSANDNNWASFDLAP 289
             +      ++    ++  D   +     + A  K  A+       SA+  +  SFD   
Sbjct: 240 QKDIAFSPPIQPPKDILGEDVQQRRIDLFSAALCKQGAEGCPHIQRSASLGSIGSFD--- 296

Query: 290 QVKVSQTSSNLNTLETVFSQLSVPASVPGQVSGIP----------SGAGAPVIAPATNVN 339
            + VS  S N  +L  + ++         Q +G            +G+G+          
Sbjct: 297 SLSVSIKSFNSGSLADIVAE-------AEQAAGNHQDKMPAFPRMAGSGSHASLDHFKAP 349

Query: 340 VLPGGGSPVASVGHTPFSVFSAAAPA-APAVSGFATFPSANAPAPAPGVTPL--LPVSVN 396
           V P   +P+A     P  +F   A + AP V  F   P   APA      P   LP S++
Sbjct: 350 VAPEAAAPMAP----PIDLFQLPATSPAPPVDLFEIPPLDPAPAINAYQPPQTSLPSSID 405

Query: 397 AGNSFSMQH--------------------------QPPLFPTAGGQFTASQFTPPVAGSS 430
                + Q                           QP          T     P +AGS+
Sbjct: 406 LFGGITQQQSINSLDEKSPELSIPKNEGWATFDGIQPIASTPGNENLTPFSIGPSMAGSA 465

Query: 431 NNQQWNTSLAQNAQGPP----AAQPAQSVPKPALE----------------SASGGLSQP 470
           N  Q   SL +  Q PP    + + + S P P L                 +A       
Sbjct: 466 NFDQV-PSLDKGMQWPPFQNSSDEESASGPAPWLGDLHNVEAPDNTSAQNWNAFEFDDSV 524

Query: 471 SPVEVKSTGRTALPEDLFTAN---------YSSFPASVPGWQTVPPHGM----------- 510
           + + ++   +++ P+                +    +  G +   PHG            
Sbjct: 525 AGIPLEGIKQSSEPQTAANMPPTADQLIGCKALEDFNKDGIKRTAPHGQGELPGLDEPSD 584

Query: 511 VYAMQYNTAAPMPNFVHSKSTTN------PFDVNNDSHPVQAQTFPSMASLQGALPNVSH 564
           + A    T    P   H++S  N      PFD+  DS       F  M+SL+ ALP+   
Sbjct: 585 ILAEPSYTPPAHPIMEHAQSHANDHKSINPFDLPYDSDLEPGNMFLDMSSLEAALPDAHL 644

Query: 565 PPGLLRTSSLTPSPAWMP--PQASPYPSAMPSQMPTYAAAIPSQMPTHAPAMPPRPYLG 621
           P   L +    P   W P     +  P+A    +   A   P+    +     P  ++G
Sbjct: 645 PSAFLGSGMTEP---WFPQDLAMTYIPAAPQGGLAYMAGQAPNPQLGNVQTQGPVAFVG 700

Length = 705
>gnl|CDD|178666 PLN03119, PLN03119, putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf Back     alignment and domain information
>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 677
PLN03131705 hypothetical protein; Provisional 100.0
PLN03119648 putative ADP-ribosylation factor GTPase-activating 100.0
KOG0702524 consensus Predicted GTPase-activating protein [Sig 100.0
KOG0703287 consensus Predicted GTPase-activating protein [Sig 100.0
PF01412116 ArfGap: Putative GTPase activating protein for Arf 100.0
smart00105112 ArfGap Putative GTP-ase activating proteins for th 100.0
COG5347319 GTPase-activating protein that regulates ARFs (ADP 99.97
PLN03114395 ADP-ribosylation factor GTPase-activating protein 99.93
KOG0704386 consensus ADP-ribosylation factor GTPase activator 99.91
KOG0706454 consensus Predicted GTPase-activating protein [Sig 99.9
KOG0705749 consensus GTPase-activating protein Centaurin gamm 99.89
KOG0521785 consensus Putative GTPase activating proteins (GAP 99.8
KOG1117 1186 consensus Rho- and Arf-GTPase activating protein A 99.66
KOG0818669 consensus GTPase-activating proteins of the GIT fa 99.66
KOG0702524 consensus Predicted GTPase-activating protein [Sig 98.41
KOG0521785 consensus Putative GTPase activating proteins (GAP 91.44
PF0064342 zf-B_box: B-box zinc finger; InterPro: IPR000315 Z 86.53
PRK12495226 hypothetical protein; Provisional 80.93
PRK00085247 recO DNA repair protein RecO; Reviewed 80.29
>PLN03131 hypothetical protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.5e-67  Score=576.77  Aligned_cols=254  Identities=51%  Similarity=0.857  Sum_probs=231.2

Q ss_pred             CcchhhhhHHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEecceeheehhhhhhhccCCcceeecccccCCHHHHHHHHhc
Q 005784            1 MANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVKALQEG   80 (677)
Q Consensus         1 M~sr~ke~ernekiLr~Llk~pgNk~CADCga~~P~WaSin~GVFVC~~CSGIHR~LgHrVKSIsLD~WT~eEV~~mq~g   80 (677)
                      |++| |++|++|++|++|+++++|++||||++++|+|||+|||||||++|+||||+|+||||||+||+|+.+||++|+.+
T Consensus         1 m~Sk-kqqErnekiLreLlk~PgNk~CADCga~~P~WASiNlGIFICi~CSGIHRsLghRVKSVTLD~WtdeEV~~Mk~g   79 (705)
T PLN03131          1 MGSR-KEEERNEKIIRGLMKLPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIHREFTHRVKSVSMSKFTSQDVEALQNG   79 (705)
T ss_pred             Ccch-HHHHHHHHHHHHHhhCcCCCccccCCCCCCCeeEeccceEEchhchhhhcccCcccccccCCCCCHHHHHHHHHh
Confidence            8898 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHhhcCCCCCCCCCCCChHHHHHHHHHHHHhhcccccCCCCCCCCCccCCCCcccccccc-cCCCCCCCC---
Q 005784           81 GNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGERNYDKPPRVKMGDKEDSYDIRR-DTYQGGSRS---  156 (677)
Q Consensus        81 GN~raN~i~ea~~~p~~~~~Pdssd~~~lreFIr~KYeeKrF~~e~~~d~ppr~k~~~keds~e~Rr-~sy~~gs~S---  156 (677)
                      ||+++|+|||++|+..+.+.|+..+.+++|+|||.|||+|||+.....+++++.....+.+..|+|| ++|++|+||   
T Consensus        80 GN~~AN~iyeanwd~~r~~lP~~sd~ekrr~FIR~KYVeKRFa~~~s~d~pprd~q~~r~~e~e~rr~~syh~~SqSPpY  159 (705)
T PLN03131         80 GNQRAREIYLKDWDQQRQRLPDNSKVDKIREFIKDIYVDKKYAGGKTHDKPPRDLQRIRSHEDETRRACSYHSYSQSPPY  159 (705)
T ss_pred             ccHHHHHHHHhhcccccCCCCCCccHHHHHHHHHHHHhhhhhhcCCCCCCCchhhhhhhcccccccccccccCCCcCCCc
Confidence            9999999999999988778888888888999999999999999999999999887666667778999 899988775   


Q ss_pred             ---------------------------------------------------------CCCC------CC-CCCCCCCCCC
Q 005784          157 ---------------------------------------------------------PISD------GD-SKLEGRSPEQ  172 (677)
Q Consensus       157 ---------------------------------------------------------r~sd------~~-~k~~~kS~~s  172 (677)
                                                                               |.+|      ++ ++++.++++.
T Consensus       160 ~~~yedrRygk~~~~~~R~pg~d~~~~~~k~~~~~~SP~r~~d~~~eDrf~ne~~~~r~~d~s~ss~~~~~r~~~~SP~~  239 (705)
T PLN03131        160 DFQYEDRRYGKQAGILTRKPGSDRGLNVGKMASFICSPTRLNDRMFEDRFANEGSVSGVSDYSVSSGGDLVRSGAESPNF  239 (705)
T ss_pred             ccccccccccccccccccCCccccccccccccccccCchhhhhhhhhcccccCCCCcccccccccccccccccCCCCCCc
Confidence                                                                     1111      12 4556678888


Q ss_pred             CCCCCCCCCCCCCccccccCCCCCCCCcCCCCCCCCCCcCCCCCccccccCCCCCCCCCCCcchhhhcccCCccCCCCCC
Q 005784          173 PKDPESSSPPVVRPVREILGDNVLPLRISEPPKANGVRVADGSTNTQRTASSGNLGSANENQAEVKLETTGSLIDFDADP  252 (677)
Q Consensus       173 ~kd~~ssSpP~v~Pv~dlLG~daPpl~i~~~~k~~~~~~~~gs~~~qr~sssss~~s~~~~~~~~K~~~s~sLiDf~sdp  252 (677)
                      +|+...  +|+++|+++|||+|+|++||.++++++..+++++..+.||++++++++|++++..++|++++.+||||..|+
T Consensus       240 ~k~~~~--Sp~v~p~r~ilg~n~~~~~v~~~s~~~~~~~~~~~~~~Qrt~Ssgs~gS~dg~s~s~Ks~~s~sL~D~~~e~  317 (705)
T PLN03131        240 QKDIAF--SPPIQPPKDILGEDVQQRRIDLFSAALCKQGAEGCPHIQRSASLGSIGSFDSLSVSIKSFNSGSLADIVAEA  317 (705)
T ss_pred             ccccCC--CCCcccchhhccccccccccCCCcccccccccccccccccccccCcccccCCCccceeecccccccccccCc
Confidence            888753  356799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChh
Q 005784          253 KPSPA  257 (677)
Q Consensus       253 ~p~~~  257 (677)
                      ++.-+
T Consensus       318 ~~~~~  322 (705)
T PLN03131        318 EQAAG  322 (705)
T ss_pred             ccccc
Confidence            96544

>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins [] Back     alignment and domain information
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] Back     alignment and domain information
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PRK12495 hypothetical protein; Provisional Back     alignment and domain information
>PRK00085 recO DNA repair protein RecO; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query677
2olm_A140 Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 3e-18
2d9l_A134 Solution Structure Of The Arfgap Domain Of Human Ri 3e-17
2iqj_A134 Crystal Structure Of The Gap Domain Of Smap1l (Loc6 3e-11
2crr_A141 Solution Structure Of Arfgap Domain From Human Smap 4e-11
3sub_A163 Crystal Structure Of The Catalytic Domain Of Plasmo 8e-08
2owa_A138 Crystal Structure Of Putative Gtpase Activating Pro 2e-06
3dwd_A147 Crystal Structure Of The Arfgap Domain Of Human Arf 2e-06
3o47_A329 Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le 3e-06
1dcq_A278 Crystal Structure Of The Arf-Gap Domain And Ankyrin 2e-05
3fm8_C392 Crystal Structure Of Full Length Centaurin Alpha-1 2e-04
3feh_A386 Crystal Structure Of Full Length Centaurin Alpha-1 3e-04
2b0o_E301 Crystal Structure Of Uplc1 Gap Domain Length = 301 5e-04
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 140 Back     alignment and structure 
Iteration: 1

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/119 (36%), Positives = 74/119 (62%), Gaps = 2/119 (1%)
Query: 6   KEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT--HRVKS 63
           K++EK+ +++R +  L  NR+C +C+  G  YV     +FVCT+CSG  R     HRVKS
Sbjct: 7   KQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKS 66
Query: 64  VSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRY 122
           +SM  FT QE++ LQ+ GN+  K++ L  +D +  + PD  + ++++ F++  Y  +R+
Sbjct: 67  ISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRW 125
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip Length = 134 Back     alignment and structure
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134 Back     alignment and structure
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1 Length = 141 Back     alignment and structure
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium Falciparum Arf Gtpase Activating Protein Length = 163 Back     alignment and structure
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein For Adp Ribosylation Factor From Cryptosporidium Parvum (Cgd5_1040) Length = 138 Back     alignment and structure
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147 Back     alignment and structure
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 Back     alignment and structure
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278 Back     alignment and structure
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392 Back     alignment and structure
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386 Back     alignment and structure
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query677
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 2e-48
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 3e-26
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 2e-24
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 2e-24
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 4e-23
2owa_A138 Arfgap-like finger domain containing protein; zinc 7e-23
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 5e-22
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 1e-20
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 3e-19
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 3e-17
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 1e-16
3o47_A329 ADP-ribosylation factor GTPase-activating protein 1e-16
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 2e-16
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 2e-13
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 4e-08
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 1e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-06
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 3e-05
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140 Back     alignment and structure
 Score =  165 bits (419), Expect = 2e-48
 Identities = 43/123 (34%), Positives = 76/123 (61%), Gaps = 2/123 (1%)

Query: 2   ANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREF--TH 59
           + + K++EK+ +++R +  L  NR+C +C+  G  YV     +FVCT+CSG  R     H
Sbjct: 3   SAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPH 62

Query: 60  RVKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVD 119
           RVKS+SM  FT QE++ LQ+ GN+  K++ L  +D +  + PD  + ++++ F++  Y  
Sbjct: 63  RVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEK 122

Query: 120 RRY 122
           +R+
Sbjct: 123 KRW 125
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386 Back     alignment and structure
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134 Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 Back     alignment and structure
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301 Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147 Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368 Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163 Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144 Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query677
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 100.0
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 100.0
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 100.0
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 100.0
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 99.97
2owa_A138 Arfgap-like finger domain containing protein; zinc 99.97
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 99.96
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 99.96
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 99.95
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 99.95
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 99.94
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 99.94
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 99.94
3o47_A329 ADP-ribosylation factor GTPase-activating protein 99.92
1u5k_A244 Hypothetical protein; OBD-fold, Zn-binding, recomb 89.07
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Back     alignment and structure
Probab=100.00  E-value=9.8e-40  Score=306.58  Aligned_cols=124  Identities=35%  Similarity=0.689  Sum_probs=116.9

Q ss_pred             cchhhhhHHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEecceeheehhhhhhhccCC--cceeecccccCCHHHHHHHHh
Q 005784            2 ANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT--HRVKSVSMAKFTSQEVKALQE   79 (677)
Q Consensus         2 ~sr~ke~ernekiLr~Llk~pgNk~CADCga~~P~WaSin~GVFVC~~CSGIHR~Lg--HrVKSIsLD~WT~eEV~~mq~   79 (677)
                      .++++++|+++++|++|++.++|++||||++++|+|||+|||||||++|+||||+||  ||||||+||+|+.++|++|+.
T Consensus         3 ~~~~~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~s~VrSl~ld~w~~~~l~~m~~   82 (140)
T 2olm_A            3 SAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQK   82 (140)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSCCCEEETTTCCCCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCcceeeecCCCCCCHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999998  699999999999999999999


Q ss_pred             cCcHHHHHHHhhcCCCCCCCCCCCChHHHHHHHHHHHHhhcccccC
Q 005784           80 GGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGE  125 (677)
Q Consensus        80 gGN~raN~i~ea~~~p~~~~~Pdssd~~~lreFIr~KYeeKrF~~e  125 (677)
                      +||.++|++||+++++...+.|+.+|.+.+++|||+||++|+|+..
T Consensus        83 ~GN~~an~~~e~~~~~~~~~~P~~~d~~~~~~fIr~KYe~k~f~~~  128 (140)
T 2olm_A           83 HGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVP  128 (140)
T ss_dssp             CHHHHHHHHHTTTCCTTTSCCCCTTCHHHHHHHHHHHHTSCTTCCC
T ss_pred             hccHHHHHHHHhhCCcccCCCCCCCCHHHHHHHHHHHHcCCeeeCC
Confidence            9999999999999988777788887788889999999999999853
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Back     alignment and structure
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Back     alignment and structure
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 677
d1dcqa2122 g.45.1.1 (A:247-368) Pyk2-associated protein beta 3e-33
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122 Back     information, alignment and structure

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  121 bits (304), Expect = 3e-33
 Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 4/120 (3%)

Query: 12  ERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAK 68
           + II  + ++  N  C +C +    ++ TN     C  CSGIHRE      R++S+++  
Sbjct: 3   KEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDV 62

Query: 69  FTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDS-SNVERLRNFIKHVYVDRRYTGERN 127
             + E+   +  GN    E++      +    P+  S++   +++I   Y++RRY  +++
Sbjct: 63  LGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKH 122

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query677
d1dcqa2122 Pyk2-associated protein beta ARF-GAP domain {Mouse 100.0
d1u5ka2157 Recombinational repair protein RecO, C-terminal do 89.1
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-37  Score=282.45  Aligned_cols=116  Identities=24%  Similarity=0.512  Sum_probs=104.9

Q ss_pred             HHHHHHHHHcCCCCCCCcCCCCCCCCeeEecceeheehhhhhhhccCC---cceeecccccCCHHHHHHHHhcCcHHHHH
Q 005784           11 NERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKALQEGGNQRAKE   87 (677)
Q Consensus        11 nekiLr~Llk~pgNk~CADCga~~P~WaSin~GVFVC~~CSGIHR~Lg---HrVKSIsLD~WT~eEV~~mq~gGN~raN~   87 (677)
                      ++++|++|++.|+|++||||++++|+|||+|||||||++|+||||+||   ||||||+||+|+++||++|+.+||.++|+
T Consensus         2 t~~~l~~l~~~p~N~~CaDC~~~~p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld~w~~~~i~~~~~~GN~~~n~   81 (122)
T d1dcqa2           2 TKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNE   81 (122)
T ss_dssp             HHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHH
T ss_pred             hHHHHHHHHhCCCCCccCCCCCCCCCeEEecCCEEEchhhhHHHhcCCCCceEeeecccCCCCHHHHHHHHHHhHHHHHH
Confidence            478999999999999999999999999999999999999999999998   59999999999999999999999999999


Q ss_pred             HHhhcCCCCCCCCCCC-ChHHHHHHHHHHHHhhcccccCC
Q 005784           88 VLLKEWDPQRQSFPDS-SNVERLRNFIKHVYVDRRYTGER  126 (677)
Q Consensus        88 i~ea~~~p~~~~~Pds-sd~~~lreFIr~KYeeKrF~~e~  126 (677)
                      +||++++.....+|+. ++...+++||++||++|+|+.++
T Consensus        82 ~~ea~~~~~~~~kp~~~~~~~~r~~fI~~KY~~k~f~~k~  121 (122)
T d1dcqa2          82 IMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK  121 (122)
T ss_dssp             HHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred             HHHhhCCcccCcCCCCCccHHHHHHHHHHHHHhCcccccc
Confidence            9999998665545553 34455788999999999998653
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure