Citrus Sinensis ID: 005832

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-----
MFISCCSLSIPELNFTPSLINHNSQVLIHQNRSKFTALSNKVQSFGQRDAMQLGSSSKPRIRNCMIQSFEHVNTLPFSDYKFSRMKLFKPRYEKSSLFSGDSLKSSNFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLCDRHFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADIGLEKKSPVLDAGLLRLLAWLRSMA
cccccccccccccccccccccccccEEEEEccccHHHHHHHHHccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHccccEEEEccccccccccEEEECccEEEcccccccccccccccHHHHHHHHHHcccccEEECcccEEEEEccccCEEEEcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccEEEEcccEEEEEEEccEEEEEEEccccEEEccEEEEcccHHHHHHHcccccccccHHHHHHHHccccccEEEEEECccccccccccccCEEEEccccccccccccEEEEEcccccccccccccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccHHHHHHHccccccccccccccccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcc
*FISCCSLSIPELNFTPSLINHNSQVLIHQNRSKFTALSNKVQSFG**************IRNCMIQSFEHVNTLPFSDYKFSRMKLFK***************************************FALMAKTVMSVDNLV************DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLCDRHFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADIGLEKKSPVLDAGLLRLLAWLR***
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MFISCCSLSIPELNFTPSLINHNSQVLIHQNRSKFTALSNKVQSFGQRDAMQLGSSSKPRIRNCMIQSFEHVNTLPFSDYKFSRMKLFKPRYEKSSLFSGDSLKSSNFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLCDRHFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADIGLEKKSPVLDAGLLRLLAWLRSMA

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Prolycopene isomerase, chloroplastic Carotene cis-trans-isomerase that converts 7,9,9'-tri-cis-neurosporene to 9'-cis-neurosporene and 7,9,9',7'-tetra-cis-lycopene (also known as prolycopene) into all-trans-lycopene. Isomerization requires redox-active components, suggesting that isomerization is achieved by a reversible redox reaction acting at specific double bonds. Isomerizes adjacent cis-double bonds at C7 and C9 pairwise into the trans-configuration, but is incapable of isomerizing single cis-double bonds at C9 and C9'.probableQ2VEX9
Prolycopene isomerase, chloroplastic Carotene cis-trans-isomerase that converts 7,9,9'-tri-cis-neurosporene to 9'-cis-neurosporene and 7,9,9',7'-tetra-cis-lycopene (also known as prolycopene) into all-trans-lycopene. Isomerization requires redox-active components, suggesting that isomerization is achieved by a reversible redox reaction acting at specific double bonds. Isomerizes adjacent cis-double bonds at C7 and C9 pairwise into the trans-configuration, but is incapable of isomerizing single cis-double bonds at C9 and C9'.probableQ8S4R4
Prolycopene isomerase, chloroplastic Carotene cis-trans-isomerase that converts 7,9,9'-tri-cis-neurosporene to 9'-cis-neurosporene and 7,9,9',7'-tetra-cis-lycopene (also known as prolycopene) into all-trans-lycopene. Isomerization requires redox-active components, suggesting that isomerization is achieved by a reversible redox reaction acting at specific double bonds. Isomerizes adjacent cis-double bonds at C7 and C9 pairwise into the trans-configuration, but is incapable of isomerizing single cis-double bonds at C9 and C9'. Carotenoid biosynthesis is partly required to form the prolamellar bodies of etioplasts.probableQ9M9Y8

Prediction of Enzyme Commission Number ?

No confident prediction of EC number!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3KA7, chain A
Confidence level:very confident
Coverage over the Query: 159-299,321-640
View the alignment between query and template
View the model in PyMOL
Template: 4DGK, chain A
Confidence level:very confident
Coverage over the Query: 158-440,468-586,616-652
View the alignment between query and template
View the model in PyMOL
Template: 2VDC, chain G
Confidence level:confident
Coverage over the Query: 107-197
View the alignment between query and template
View the model in PyMOL