Citrus Sinensis ID: 005863

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670---
MATYNPSLSYQRECFSTPVPGDNKFSNCLDPTSSHPDNVNMYVNPASSTELYSEILSVGSSLSPRNCVEVPSTGGTNGKMFIPSTSDAVVLPSIDGQLNAGTGNVILTTQPSVLDGEQNFQCQGLSLSLSTQMTSAVSVPSFQHQYSNPRFSSFLRTHLSVPGKGTMPCQDNENETSKELRSSEGMLPGFQTEPPFNTQCSIGHNEMHSGTYQYEPIGFNSTILKSKHLKAAQQLLDEAVNIQKALKLPNSNKNDAKETDGRSSSMLPAFHGILSNPTESVSNSSSELSHAERQELLNKKTKLLSMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTISRHFRSLRDAISDQIQVTGRSLGEQETSSNGQASIPRLRFVDHQSRQQRALQQLGVMRHAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPMIEEMYKEEFGDTEENSKSCLENANKASSQNSSAPENRGEELQDSLSSKSGRSIHDVMSDYIPDVEMNKPTASSLFQEGSHGDNVLNSGIMRLQNDQRPNINDHRLYASIPHNQNGNDVLMGASAATYGIQELRSYAISNQVSLALGLRHQGTDVFPVSAGNNIGGDKIVVSSEGHDTADYHCMDLGNQQDRFGNPQLLHDFVV
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccHHHHcccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccEEEccccccccccccccccHHcc
matynpslsyqrecfstpvpgdnkfsncldptsshpdnvnmyvnpassTELYSEILsvgsslsprncvevpstggtngkmfipstsdavvlpsidgqlnagtgnvilttqpsvldgeqnfqcqglslslstqmtsavsvpsfqhqysnprfssflrthlsvpgkgtmpcqdnenetskelrssegmlpgfqteppfntqcsighnemhsgtyqyepigfnstILKSKHLKAAQQLLDEAVNIQKAlklpnsnkndaketdgrsssmlpafhgilsnptesvsnssselSHAERQELLNKKTKLLSMLEEVDRGYKQYYHQMQIVASSfdmvaghgaakSYTVLALQTISRHFRSLRDAISDQIQVTGRslgeqetssngqasiprlrfvdHQSRQQRALQQLGVmrhawrpqrglpessVSILRAWLFEhflhpypndsEKIMLAKQTGLSKNQVANWFINARVRLWKPMIEEMYkeefgdteensKSCLENankassqnssapenrgeelqdslssksgrsiHDVMsdyipdvemnkptasslfqegshgdnvlnsgimrlqndqrpnindhrlyasiphnqngndvlMGASAATYGIQELRSYAISNQVSLALGlrhqgtdvfpvsagnniggdkivvsseghdtadyhcmdlgnqqdrfgnpqllhdfvv
matynpslsyqreCFSTPVPGDNKFSNCLDPTSSHPDNVNMYVNPASSTELYSEILSVGSSLSPRNCVEVPSTGGTNGKMFIPSTSDAVVLPSIDGQLNAGTGNVILTTQPSVLDGEQNFQCQGLSLSLSTQMTSAVSVPSFQHQYSNPRFSSFLRTHLSVPGKGTMPCQDNENETSKELRSSEGMLPGFQTEPPFNTQCSIGHNEMHSGTYQYEPIGFNSTILKSKHLKAAQQLLDEAVNIQkalklpnsnkndaKETDGRSSSMLPAFHGILSNPTESVSNSSSELSHAERQELLNKKTKLLSMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTISRHFRSLRDAISDQIQVTgrslgeqetssngqasiprlrFVDHQSRQQRALQQLGVMRHAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPMIEEMYKEEFGDTEENSKSCLENANKassqnssapenrgEELQdslssksgrsIHDVMSDYIPDVEMNKPTASSLFQEGSHGDNVLNSGIMRLQNDQRPNINDHRLYASIPHNQNGNDVLMGASAATYGIQELRSYAISNQVSLALGLRHQGTDVFPVSAGNNIGGDKIVVSSEGHDTADYHCMDLGNQqdrfgnpqlLHDFVV
MATYNPSLSYQRECFSTPVPGDNKFSNCLDPTSSHPDNVNMYVNPASSTELYSEILSVGSSLSPRNCVEVPSTGGTNGKMFIPSTSDAVVLPSIDGQLNAGTGNVILTTQPSVLDGEQNFQCQGLSLSLSTQMTSAVSVPSFQHQYSNPRFSSFLRTHLSVPGKGTMPCQDNENETSKELRSSEGMLPGFQTEPPFNTQCSIGHNEMHSGTYQYEPIGFNSTILKSKHLKAAQQLLDEAVNIQKALKLPNSNKNDAKETDGRSSSMLPAFHGIlsnptesvsnssselsHAERQELLNKKTKLLSMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTISRHFRSLRDAISDQIQVTGRSLGEQETSSNGQASIPRLRFVDHQSRQQRALQQLGVMRHAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPMIEEMYKEEFGDTEENSKSCLEnankassqnssaPENRGEELQDSLSSKSGRSIHDVMSDYIPDVEMNKPTASSLFQEGSHGDNVLNSGIMRLQNDQRPNINDHRLYASIPHNQNGNDVLMGASAATYGIQELRSYAISNQVSLALGLRHQGTDVFPVSAGNNIGGDKIVVSSEGHDTADYHCMDLGNQQDRFGNPQLLHDFVV
******************************************************IL***********************MFIPSTSDAVVLPSIDGQLNAGTGNVILTTQPSVLDGEQNFQCQGLSL**************************************************************************IGH*EMHSGTYQYEPIGFNSTILKSKHLKAAQQLLDEAVNI************************************************************LLSMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTISRHFRSLRDAIS*****************************************LGVMRHAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPMIEEMY**************************************************************************************************RLYASIPHNQNGNDVLMGASAATYGIQELRSYAISNQVSLALGLRHQGTDVFPVSAGNNIGGDKIVVSSEGHDTADYHCMDLG*****************
*ATYN*S***********************************************************************************************************************************************************************************************************************ILKSKHLKAAQQLLDEAVNIQK********************************************************TKLLSMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTISRHFRS*****************************************************************VSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKP***********************************************************************************************************************************************LALG**************************************************LLHDFVV
MATYNPSLSYQRECFSTPVPGDNKFSNCLDPTSSHPDNVNMYVNPASSTELYSEILSVGSSLSPRNCVEVPSTGGTNGKMFIPSTSDAVVLPSIDGQLNAGTGNVILTTQPSVLDGEQNFQCQGLSLSLSTQMTSAVSVPSFQHQYSNPRFSSFLRTHLSVPGKGTMP**************SEGMLPGFQTEPPFNTQCSIGHNEMHSGTYQYEPIGFNSTILKSKHLKAAQQLLDEAVNIQKALKLPNS************SSMLPAFHGILSN****************RQELLNKKTKLLSMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTISRHFRSLRDAISDQIQVT*************QASIPRLRFVDHQSRQQRALQQLGVMRHAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPMIEEMYKE********************************************SIHDVMSDYIPDVEMNKPTASSLFQEGSHGDNVLNSGIMRLQNDQRPNINDHRLYASIPHNQNGNDVLMGASAATYGIQELRSYAISNQVSLALGLRHQGTDVFPVSAGNNIGGDKIVVSSEGHDTADYHCMDLGNQQDRFGNPQLLHDFVV
*************CFSTPVPGDNKFSNCLDPTSSHPDNVNMYVNPASSTELYSEILSVGSSLSPRNCVEVPSTGGT******PSTSDAVVLPSIDGQLNAGTGNVILTTQPSVLDGEQNFQCQGLSLSLSTQMTSAVSVPSFQHQYSNPRFSSFLRTHLSVPGKGT**********SKE*******LPGFQ****FNTQCSIGHNEMHSGTYQYEPIGFNSTILKSKHLKAAQQLLDEAVNIQ**********************************************HAERQELLNKKTKLLSMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTISRHFRSLRDAISDQIQVTGRSLG************PRLRFVDHQSRQQRALQQLGVMRHAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPMIEEMYKEEFGDT**************************************************************************************NINDHRLYASIPHNQNGNDVLMGASAATYGIQELRSYAISNQVSLALGLRHQGTDVFPVS*GNNIGGDKIVV*SEGHDTADYHC*DL**********Q*******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATYNPSLSYQRECFSTPVPGDNKFSNCLDPTSSHPDNVNMYVNPASSTELYSEILSVGSSLSPRNCVEVPSTGGTNGKMFIPSTSDAVVLPSIDGQLNAGTGNVILTTQPSVLDGEQNFQCQGLSLSLSTQMTSAVSVPSFQHQYSNPRFSSFLRTHLSVPGKGTMPCQDNENETSKELRSSEGMLPGFQTEPPFNTQCSIGHNEMHSGTYQYEPIGFNSTILKSKHLKAAQQLLDEAVNIQKALKLPNSNKNDAKETDGRSSSMLPAFHGILSNPTESVSNSSSELSHAERQELLNKKTKLLSMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTISRHFRSLRDAISDQIQVTGRSLGEQETSSNGQASIPRLRFVDHQSRQQRALQQLGVMRHAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPMIEEMYKEEFGDTEENSKSCLENANKASSQNSSAPENRGEELQDSLSSKSGRSIHDVMSDYIPDVEMNKPTASSLFQEGSHGDNVLNSGIMRLQNDQRPNINDHRLYASIPHNQNGNDVLMGASAATYGIQELRSYAISNQVSLALGLRHQGTDVFPVSAGNNIGGDKIVVSSEGHDTADYHCMDLGNQQDRFGNPQLLHDFVV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query673 2.2.26 [Sep-21-2011]
Q9FWS9524 BEL1-like homeodomain pro yes no 0.578 0.742 0.505 1e-101
Q9SIW1482 BEL1-like homeodomain pro no no 0.542 0.757 0.482 7e-94
Q9FXG8538 BEL1-like homeodomain pro no no 0.564 0.706 0.507 2e-93
O65685532 BEL1-like homeodomain pro no no 0.567 0.718 0.464 5e-90
Q9SJ56680 BEL1-like homeodomain pro no no 0.369 0.366 0.544 5e-70
Q94KL5627 BEL1-like homeodomain pro no no 0.369 0.397 0.496 5e-65
Q9SW80739 BEL1-like homeodomain pro no no 0.369 0.336 0.484 5e-65
Q1PFD1290 BEL1-like homeodomain pro no no 0.405 0.941 0.459 8e-60
Q38897611 Homeobox protein BEL1 hom no no 0.283 0.312 0.553 9e-57
Q8S897431 BEL1-like homeodomain pro no no 0.344 0.538 0.465 1e-56
>sp|Q9FWS9|BLH3_ARATH BEL1-like homeodomain protein 3 OS=Arabidopsis thaliana GN=BLH3 PE=1 SV=1 Back     alignment and function desciption
 Score =  371 bits (953), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 220/435 (50%), Positives = 272/435 (62%), Gaps = 46/435 (10%)

Query: 69  EVPSTGGTNGKM-FIPSTSDAVVLPSIDGQLNAGTGNVILTTQPSVLDGEQNFQCQGLSL 127
           E+ S    N +M FIP TSD  V            GNV +++       + +F   GLSL
Sbjct: 41  EIVSGDVRNNEMVFIPPTSDVAV-----------NGNVTVSS------NDLSFHGGGLSL 83

Query: 128 SLSTQMTSAVSVPSFQHQYSNPRFSSFLRTHLSVPGKGTMPCQD-NENETSKELRSSEGM 186
           SL  Q+ SAVSV  FQ+ Y N      L   LS          D N    S     S+ +
Sbjct: 84  SLGNQIQSAVSVSPFQYHYQN------LSNQLSYNNLNPSTMSDENGKSLSVHQHHSDQI 137

Query: 187 LPGFQTEPPFNTQCSIGHNEMHSGTYQYEPIGFNSTILKSKHLKAAQQLLDEAVNIQKAL 246
           LP            +  +       Y+YE  GF S++L+S++LK  QQLLDE V+++K L
Sbjct: 138 LPSSVY------NNNGNNGVGFYNNYRYETSGFVSSVLRSRYLKPTQQLLDEVVSVRKDL 191

Query: 247 KLPNSNKNDAKETDGRSSSMLPAFH-GILSNPTESVSNSSSELSHAERQELLNKKTKLLS 305
           KL N    + K  D         FH G   N TE   + S ELS +ERQEL +KK+KLL+
Sbjct: 192 KLGNKKMKNDKGQD---------FHNGSSDNITEDDKSQSQELSPSERQELQSKKSKLLT 242

Query: 306 MLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTISRHFRSLRDAISDQIQV 365
           M++EVD+ Y QY+HQM+ +ASSF+MV G GAAK YT +AL  ISRHFR LRDAI +QIQV
Sbjct: 243 MVDEVDKRYNQYHHQMEALASSFEMVTGLGAAKPYTSVALNRISRHFRCLRDAIKEQIQV 302

Query: 366 TGRSLGEQETSSNGQASIPRLRFVDHQSRQQRAL-QQLGVMRHAWRPQRGLPESSVSILR 424
               LGE+ETS      IPRLR++D + RQQRAL QQLG++R AWRPQRGLPE+SVSILR
Sbjct: 303 IRGKLGERETSDEQGERIPRLRYLDQRLRQQRALHQQLGMVRPAWRPQRGLPENSVSILR 362

Query: 425 AWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPMIEEMYKEEFGDTEE 484
           AWLFEHFLHPYP +SEKIML+KQTGLSKNQVANWFINARVRLWKPMIEEMYKEEFG++ E
Sbjct: 363 AWLFEHFLHPYPKESEKIMLSKQTGLSKNQVANWFINARVRLWKPMIEEMYKEEFGESAE 422

Query: 485 NSKSCLENANKASSQ 499
                L N+N+ + +
Sbjct: 423 ----LLSNSNQDTKK 433
Transcription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM).
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SIW1|BLH7_ARATH BEL1-like homeodomain protein 7 OS=Arabidopsis thaliana GN=BLH7 PE=2 SV=1 Back     alignment and function description
>sp|Q9FXG8|BLH10_ARATH BEL1-like homeodomain protein 10 OS=Arabidopsis thaliana GN=BLH10 PE=1 SV=1 Back     alignment and function description
>sp|O65685|BLH6_ARATH BEL1-like homeodomain protein 6 OS=Arabidopsis thaliana GN=BLH6 PE=2 SV=1 Back     alignment and function description
>sp|Q9SJ56|BLH1_ARATH BEL1-like homeodomain protein 1 OS=Arabidopsis thaliana GN=BLH1 PE=1 SV=1 Back     alignment and function description
>sp|Q94KL5|BLH4_ARATH BEL1-like homeodomain protein 4 OS=Arabidopsis thaliana GN=BLH4 PE=2 SV=2 Back     alignment and function description
>sp|Q9SW80|BLH2_ARATH BEL1-like homeodomain protein 2 OS=Arabidopsis thaliana GN=BLH2 PE=1 SV=3 Back     alignment and function description
>sp|Q1PFD1|BLH11_ARATH BEL1-like homeodomain protein 11 OS=Arabidopsis thaliana GN=BLH11 PE=2 SV=1 Back     alignment and function description
>sp|Q38897|BEL1_ARATH Homeobox protein BEL1 homolog OS=Arabidopsis thaliana GN=BEL1 PE=1 SV=2 Back     alignment and function description
>sp|Q8S897|BLH5_ARATH BEL1-like homeodomain protein 5 OS=Arabidopsis thaliana GN=BLH5 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query673
224066127704 predicted protein [Populus trichocarpa] 0.994 0.950 0.535 0.0
255538762739 bel1 homeotic protein, putative [Ricinus 0.988 0.899 0.547 0.0
359492697698 PREDICTED: BEL1-like homeodomain protein 0.936 0.902 0.523 1e-166
147766088687 hypothetical protein VITISV_001987 [Viti 0.919 0.901 0.516 1e-159
356551876636 PREDICTED: BEL1-like homeodomain protein 0.895 0.948 0.481 1e-143
359475104691 PREDICTED: BEL1-like homeodomain protein 0.964 0.939 0.478 1e-142
356518012637 PREDICTED: BEL1-like homeodomain protein 0.887 0.937 0.476 1e-141
357438117627 BEL1-like homeodomain protein [Medicago 0.898 0.964 0.488 1e-141
356509664646 PREDICTED: BEL1-like homeodomain protein 0.890 0.927 0.480 1e-139
356562373613 PREDICTED: BEL1-like homeodomain protein 0.855 0.939 0.470 1e-139
>gi|224066127|ref|XP_002302014.1| predicted protein [Populus trichocarpa] gi|222843740|gb|EEE81287.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/708 (53%), Positives = 469/708 (66%), Gaps = 39/708 (5%)

Query: 1   MATYNPSLSYQRECFSTPVPGDNKFSNCLDPTSSHPDNVNMYVNPASSTELYSEILSVGS 60
           MATY P+   Q       + GD K ++  D   S   ++  Y N   +   YS+IL  G 
Sbjct: 1   MATYYPTSRSQNNNLHALLTGDQKLASYSD-LPSDLSSMKSYTNHTPAAGSYSDIL-YGG 58

Query: 61  SLSPRNCVEVPSTGGTNGKMFIPSTSDAVVLPSIDGQLNAGTGNVILTT----------- 109
           SLS +N  E  S+G  N  +FIP TSD + L S+ GQLN   GN++  +           
Sbjct: 59  SLSSQNGAEFSSSGARNEIVFIPPTSDTMNLQSVGGQLNTAAGNLVGDSVSGDSQAVPPR 118

Query: 110 -QPSVLDGEQNFQCQGLSLSLSTQMTSAVSVPSFQHQYSNPRFSSFLRTHLSVPGKGTMP 168
               + D EQNFQ QGL L L  Q+ SAVS+PS Q+QY N  F S L +HL VP K T+P
Sbjct: 119 MHLGIPDCEQNFQSQGLPLRLGMQVQSAVSMPSLQYQYLNQNFPSSLSSHLLVPEKWTLP 178

Query: 169 CQDNENETSKELRSSEGMLPGF--------QTEPPFNTQCSIGHNEMHSGTYQYEPIGFN 220
           C+ +E+  SKELR  EG LPGF        +TE   N Q  +G  +MH+    Y   G+ 
Sbjct: 179 CEGDESNQSKELREFEG-LPGFAGSSHNPIKTESSHNPQYIVGLRDMHAEMNMYGLSGYA 237

Query: 221 STILKSKHLKAAQQLLDEAVNIQKALKLPNSNK--NDAKETDGR--SSSMLPAFHGILSN 276
           +T+L S++LK+ Q LLDE VN++KALK P SNK  +D KE+D R  S SMLP+ +    +
Sbjct: 238 NTLLNSRYLKSVQHLLDEVVNVKKALKQPQSNKCSDDFKESDRRPSSCSMLPSSNVKPPD 297

Query: 277 PTESVSNSSSELSHAERQELLNKKTKLLSMLEEVDRGYKQYYHQMQIVASSFDMVAGHGA 336
           P ES ++S+ ELS  ERQ+LL+KKTKLLSMLEEVDR YKQYYHQMQIV   FD VAGHGA
Sbjct: 298 PAESTADSTPELSPVERQDLLDKKTKLLSMLEEVDRKYKQYYHQMQIVVLYFDTVAGHGA 357

Query: 337 AKSYTVLALQTISRHFRSLRDAISDQIQVTGRSLGEQETSSNGQASIPRLRFVDHQSRQQ 396
           AKSYT LALQTISRHFR LRDAIS QI+V  + LGEQ TS NGQ  IPRLR+VDHQ+RQQ
Sbjct: 358 AKSYTALALQTISRHFRCLRDAISGQIEVIMKRLGEQGTSPNGQGGIPRLRYVDHQTRQQ 417

Query: 397 RALQQLGVMRHAWRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVA 456
           RALQQLGVMRHAWRPQRGLPESSVS+LRAWLFEHFLHPYP+DSEKIMLA+Q GL+++QVA
Sbjct: 418 RALQQLGVMRHAWRPQRGLPESSVSVLRAWLFEHFLHPYPSDSEKIMLARQAGLTRSQVA 477

Query: 457 NWFINARVRLWKPMIEEMYKEEFGDTEENSKSCLENANKA---SSQNSSAPENRGEELQD 513
           NWFINARVRLWKPM+E+MYKEEFGD+E NSKS L+   KA    S N    ENR  EL +
Sbjct: 478 NWFINARVRLWKPMVEDMYKEEFGDSETNSKSSLDETTKAHGDKSGNHLTSENRLRELYE 537

Query: 514 SLSSKSGR-----SIHDVMSDYIPDVEMNKPTASSLFQEGSHGDNVLNSGIMRLQNDQRP 568
           S++S +         HD+ S +I ++EM +P A ++ + GS G NV  S IM+   D+R 
Sbjct: 538 SVTSTAADISQPGQAHDIKSSHILELEMKEPMAKTVLENGSQGPNVAESDIMKFPRDRRL 597

Query: 569 NI-NDHRL--YASIPHNQNGNDVLMGASAATYGIQELRSYAISNQVSLALGLRHQGTDVF 625
           NI +DH    + +IP  QNG+  LM A AATY +  L  +A+ +Q+SLALGL+   +D F
Sbjct: 598 NIDDDHNFCPHGNIPCGQNGDGNLMSA-AATYDVSHLNGFAVGSQMSLALGLQSNDSDSF 656

Query: 626 PVSAGNNIGGDKIVVSSEGHDTADYHCMDLGNQQDRFGNPQLLHDFVV 673
           P   G ++ G+ I  SS GH+  DYHCMD G QQDR  N   LHDFVV
Sbjct: 657 PTFDGAHMRGNTISASSVGHNEVDYHCMDTGKQQDRIANSHRLHDFVV 704

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255538762|ref|XP_002510446.1| bel1 homeotic protein, putative [Ricinus communis] gi|223551147|gb|EEF52633.1| bel1 homeotic protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359492697|ref|XP_002281021.2| PREDICTED: BEL1-like homeodomain protein 3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147766088|emb|CAN65696.1| hypothetical protein VITISV_001987 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356551876|ref|XP_003544298.1| PREDICTED: BEL1-like homeodomain protein 10-like [Glycine max] Back     alignment and taxonomy information
>gi|359475104|ref|XP_003631586.1| PREDICTED: BEL1-like homeodomain protein 3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356518012|ref|XP_003527678.1| PREDICTED: BEL1-like homeodomain protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|357438117|ref|XP_003589334.1| BEL1-like homeodomain protein [Medicago truncatula] gi|355478382|gb|AES59585.1| BEL1-like homeodomain protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356509664|ref|XP_003523566.1| PREDICTED: BEL1-like homeodomain protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356562373|ref|XP_003549446.1| PREDICTED: BEL1-like homeodomain protein 7-like, partial [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query673
TAIR|locus:2018398524 BLH3 "AT1G75410" [Arabidopsis 0.638 0.820 0.457 1.1e-94
TAIR|locus:2139614532 BLH6 "AT4G34610" [Arabidopsis 0.372 0.471 0.605 9.7e-88
TAIR|locus:2013154538 BEL10 "AT1G19700" [Arabidopsis 0.646 0.808 0.460 5.4e-86
TAIR|locus:2042609482 BLH7 "AT2G16400" [Arabidopsis 0.372 0.520 0.627 3.5e-84
TAIR|locus:2039250680 BLH1 "AT2G35940" [Arabidopsis 0.578 0.572 0.423 8.6e-71
TAIR|locus:2049035627 BLH4 "BEL1-like homeodomain 4" 0.417 0.448 0.453 5.7e-67
TAIR|locus:2115000739 BLH2 "AT4G36870" [Arabidopsis 0.378 0.345 0.489 6.1e-64
TAIR|locus:2185183575 RPL "AT5G02030" [Arabidopsis t 0.282 0.330 0.507 8.6e-61
TAIR|locus:2177856611 BEL1 "AT5G41410" [Arabidopsis 0.693 0.764 0.333 3.6e-57
TAIR|locus:2018457290 BLH11 "BEL1-like homeodomain 1 0.396 0.920 0.444 2.6e-54
TAIR|locus:2018398 BLH3 "AT1G75410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 850 (304.3 bits), Expect = 1.1e-94, Sum P(3) = 1.1e-94
 Identities = 213/466 (45%), Positives = 269/466 (57%)

Query:   124 GLSLSLSTQMTSAVSVPSFQHQYSNPRFSSFLRTHLSVPGKGTMPCQDNENETSKELRSS 183
             G  LSLS       +V     QY     S+ L  +   P   TM   +N    S     S
Sbjct:    78 GGGLSLSLGNQIQSAVSVSPFQYHYQNLSNQLSYNNLNPS--TMS-DENGKSLSVHQHHS 134

Query:   184 EGMLPGFQTEPPFNTQCSIGHNEM-HSGTYQYEPIGFNSTILKSKHLKAAQQLLDEAVNI 242
             + +LP       +N     G+N +     Y+YE  GF S++L+S++LK  QQLLDE V++
Sbjct:   135 DQILPS----SVYNNN---GNNGVGFYNNYRYETSGFVSSVLRSRYLKPTQQLLDEVVSV 187

Query:   243 QKALKLPNSN-KNDAKETDGRSSSMLPAFH-GIXXXXXXXXXXXXXXXXHAERQELLNKK 300
             +K LKL N   KND K  D         FH G                  +ERQEL +KK
Sbjct:   188 RKDLKLGNKKMKND-KGQD---------FHNGSSDNITEDDKSQSQELSPSERQELQSKK 237

Query:   301 TKLLSMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTISRHFRSLRDAIS 360
             +KLL+M++EVD+ Y QY+HQM+ +ASSF+MV G GAAK YT +AL  ISRHFR LRDAI 
Sbjct:   238 SKLLTMVDEVDKRYNQYHHQMEALASSFEMVTGLGAAKPYTSVALNRISRHFRCLRDAIK 297

Query:   361 DQIQVTGRSLGEQETSSNGQASIPRLRFVDHQSRQQRAL-QQLGVMRHAWRPQRGLPESS 419
             +QIQV    LGE+ETS      IPRLR++D + RQQRAL QQLG++R AWRPQRGLPE+S
Sbjct:   298 EQIQVIRGKLGERETSDEQGERIPRLRYLDQRLRQQRALHQQLGMVRPAWRPQRGLPENS 357

Query:   420 VSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPMIEEMYKEEF 479
             VSILRAWLFEHFLHPYP +SEKIML+KQTGLSKNQVANWFINARVRLWKPMIEEMYKEEF
Sbjct:   358 VSILRAWLFEHFLHPYPKESEKIMLSKQTGLSKNQVANWFINARVRLWKPMIEEMYKEEF 417

Query:   480 GDTEENSKSCLEXXXXXXXXXXXXPENRGEELQDSLSSKSGRSIHDVMSDYIPDVEMNKP 539
             G++ E     L              + + E+   S     G + +++   Y  D E N  
Sbjct:   418 GESAE----LLSNSNQDTKKMQETSQLKHEDSSSSQQQNQGNNNNNI--PYTSDAEQNLV 471

Query:   540 TASSLFQEGSHGDNVLNSGIMRLQNDQRPNINDHRLYASIPHNQNG 585
              A       + GD   +S    L N     I+D+  Y  + + Q+G
Sbjct:   472 FADPKPDRATTGD--YDS----LMNYHGFGIDDYNRYVGLGNQQDG 511
GO:0003677 "DNA binding" evidence=ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;ISS;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP
GO:0048513 "organ development" evidence=RCA
TAIR|locus:2139614 BLH6 "AT4G34610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013154 BEL10 "AT1G19700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042609 BLH7 "AT2G16400" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039250 BLH1 "AT2G35940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049035 BLH4 "BEL1-like homeodomain 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115000 BLH2 "AT4G36870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185183 RPL "AT5G02030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2177856 BEL1 "AT5G41410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018457 BLH11 "BEL1-like homeodomain 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_II000285
hypothetical protein (704 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query673
pfam07526139 pfam07526, POX, Associated with HOX 2e-56
smart00574140 smart00574, POX, domain associated with HOX domain 1e-46
pfam0592040 pfam05920, Homeobox_KN, Homeobox KN domain 5e-20
cd0008659 cd00086, homeodomain, Homeodomain; DNA binding dom 2e-13
smart0038957 smart00389, HOX, Homeodomain 1e-10
pfam0004657 pfam00046, Homeobox, Homeobox domain 2e-06
>gnl|CDD|219452 pfam07526, POX, Associated with HOX Back     alignment and domain information 
 Score =  187 bits (478), Expect = 2e-56
 Identities = 79/141 (56%), Positives = 98/141 (69%), Gaps = 2/141 (1%)

Query: 221 STILKSKHLKAAQQLLDEAVNIQKALKLPNSNKNDAKETDGRSSSMLPAFHGILSNPTES 280
           S +  SK+LK AQ+LL+E  ++ K   L + + N A+  +G +SS   +  G  S+  +S
Sbjct: 1   SVLRGSKYLKPAQELLEEFCSVGKNKALDDDSSNGAE--NGANSSGASSGDGGGSSAGDS 58

Query: 281 VSNSSSELSHAERQELLNKKTKLLSMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSY 340
             +SS ELS AERQEL  KK KLLSMLEEVDR Y+QYY QMQ+V SSF+ VAG GAAK Y
Sbjct: 59  SDSSSPELSTAERQELQRKKAKLLSMLEEVDRRYRQYYDQMQMVISSFEAVAGLGAAKPY 118

Query: 341 TVLALQTISRHFRSLRDAISD 361
           T LALQ +SRHFR LRDAIS 
Sbjct: 119 TALALQAMSRHFRCLRDAISG 139

The function of this domain is unknown. It is often found in plant proteins associated with pfam00046. Length = 139
>gnl|CDD|214728 smart00574, POX, domain associated with HOX domains Back     alignment and domain information
>gnl|CDD|203350 pfam05920, Homeobox_KN, Homeobox KN domain Back     alignment and domain information
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner Back     alignment and domain information
>gnl|CDD|197696 smart00389, HOX, Homeodomain Back     alignment and domain information
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 673
PF07526140 POX: Associated with HOX; InterPro: IPR006563 This 100.0
smart00574140 POX domain associated with HOX domains. 100.0
KOG0773342 consensus Transcription factor MEIS1 and related H 99.98
KOG0774334 consensus Transcription factor PBX and related HOX 99.88
PF0592040 Homeobox_KN: Homeobox KN domain; InterPro: IPR0084 99.59
KOG0775304 consensus Transcription factor SIX and related HOX 99.56
cd0008659 homeodomain Homeodomain; DNA binding domains invol 99.33
PF0004657 Homeobox: Homeobox domain not present here.; Inter 99.27
smart0038956 HOX Homeodomain. DNA-binding factors that are invo 99.27
KOG0843197 consensus Transcription factor EMX1 and related HO 98.68
KOG0487308 consensus Transcription factor Abd-B, contains HOX 98.65
KOG0850245 consensus Transcription factor DLX and related pro 98.62
KOG0483198 consensus Transcription factor HEX, contains HOX a 98.6
KOG0488309 consensus Transcription factor BarH and related HO 98.6
KOG0489261 consensus Transcription factor zerknullt and relat 98.57
KOG0842307 consensus Transcription factor tinman/NKX2-3, cont 98.52
KOG0493342 consensus Transcription factor Engrailed, contains 98.52
TIGR0156558 homeo_ZF_HD homeobox domain, ZF-HD class. This mod 98.42
KOG0484125 consensus Transcription factor PHOX2/ARIX, contain 98.4
KOG2251228 consensus Homeobox transcription factor [Transcrip 98.27
KOG3802398 consensus Transcription factor OCT-1, contains POU 98.25
COG5576156 Homeodomain-containing transcription factor [Trans 98.22
KOG0485268 consensus Transcription factor NKX-5.1/HMX1, conta 98.18
KOG0492246 consensus Transcription factor MSH, contains HOX d 98.13
KOG0491194 consensus Transcription factor BSH, contains HOX d 98.06
KOG0486351 consensus Transcription factor PTX1, contains HOX 98.03
KOG0848317 consensus Transcription factor Caudal, contains HO 98.01
KOG0494332 consensus Transcription factor CHX10 and related H 98.0
KOG4577383 consensus Transcription factor LIM3, contains LIM 97.85
KOG2252558 consensus CCAAT displacement protein and related h 97.7
KOG0844408 consensus Transcription factor EVX1, contains HOX 97.41
KOG0847288 consensus Transcription factor, contains HOX domai 97.36
KOG0849354 consensus Transcription factor PRD and related pro 97.36
PF03792191 PBC: PBC domain; InterPro: IPR005542 Pbx proteins 97.26
KOG0773342 consensus Transcription factor MEIS1 and related H 97.18
KOG0490235 consensus Transcription factor, contains HOX domai 97.08
KOG1168385 consensus Transcription factor ACJ6/BRN-3, contain 96.65
PF1156956 Homez: Homeodomain leucine-zipper encoding, Homez; 96.32
PF0379152 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEIN 94.52
KOG0490235 consensus Transcription factor, contains HOX domai 93.91
KOG1146 1406 consensus Homeobox protein [General function predi 86.65
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors Back     alignment and domain information 
Probab=100.00  E-value=2.8e-42  Score=325.12  Aligned_cols=138  Identities=54%  Similarity=0.688  Sum_probs=105.1

Q ss_pred             ccccCCccchHHHHHHHHHHhhhhhccC-CCCCCCCccccCCCCCCCCCCcCCCCCCCCCCCCCCCccCCHHHHHHHHHH
Q 005863          221 STILKSKHLKAAQQLLDEAVNIQKALKL-PNSNKNDAKETDGRSSSMLPAFHGILSNPTESVSNSSSELSHAERQELLNK  299 (673)
Q Consensus       221 ~~l~~Sryl~~aQelL~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ls~~e~~e~q~k  299 (673)
                      ++|++|||||||||||||||+|++..+. ......+ ... ....+......+..+....+.....++++++||+|+|+|
T Consensus         1 q~l~~SryLk~aQeLL~E~~~v~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~e~q~k   78 (140)
T PF07526_consen    1 QVLLGSRYLKPAQELLDEFCSVGGANKKKSDDSSSG-APG-GANSSGSSSSSGGSSSSSSSSDSSSPELSPAERQELQRK   78 (140)
T ss_pred             CccccchhHHHHHHHHHHHHcccchhhhcchhhccc-ccc-ccccCCCCCCCCCCCCCccccCCCCCCCChhhHHHHHHH
Confidence            5899999999999999999999863111 1111110 000 011111111112222233333445678999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCccchhhhHHHHHHHHHHhhhhHHHHH
Q 005863          300 KTKLLSMLEEVDRGYKQYYHQMQIVASSFDMVAGHGAAKSYTVLALQTISRHFRSLRDAIS  360 (673)
Q Consensus       300 k~kLl~ml~Evd~ry~qy~~qmq~vvssfe~vaG~~aa~pyt~lal~~is~~fr~Lrd~i~  360 (673)
                      |+|||.||||||+||+|||+|||+||++||+|||.|+|+|||+|||||||||||||||+|+
T Consensus        79 K~KLl~mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqamSrhFR~LRdaI~  139 (140)
T PF07526_consen   79 KAKLLSMLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQAMSRHFRCLRDAIS  139 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999996

>smart00574 POX domain associated with HOX domains Back     alignment and domain information
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription] Back     alignment and domain information
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [] Back     alignment and domain information
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription] Back     alignment and domain information
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner Back     alignment and domain information
>PF00046 Homeobox: Homeobox domain not present here Back     alignment and domain information
>smart00389 HOX Homeodomain Back     alignment and domain information
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription] Back     alignment and domain information
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription] Back     alignment and domain information
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only] Back     alignment and domain information
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class Back     alignment and domain information
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription] Back     alignment and domain information
>KOG2251 consensus Homeobox transcription factor [Transcription] Back     alignment and domain information
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription] Back     alignment and domain information
>COG5576 Homeodomain-containing transcription factor [Transcription] Back     alignment and domain information
>KOG0485 consensus Transcription factor NKX-5 Back     alignment and domain information
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription] Back     alignment and domain information
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription] Back     alignment and domain information
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription] Back     alignment and domain information
>PF03792 PBC: PBC domain; InterPro: IPR005542 Pbx proteins are members of the TALE (three-amino-acid loop extension) family of atypical homeodomain proteins, whose members are characterised by a three-residue insertion in the first helix of the homeodomain involved in their interaction with Hox proteins Back     alignment and domain information
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription] Back     alignment and domain information
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A Back     alignment and domain information
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2 Back     alignment and domain information
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG1146 consensus Homeobox protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query673
3k2a_A67 Crystal Structure Of The Homeobox Domain Of Human H 2e-12
2lk2_A89 Solution Nmr Structure Of Homeobox Domain (171-248) 8e-12
1x2n_A73 Solution Structure Of The Homeobox Domain Of Human 3e-11
2dmn_A83 The Solution Structure Of The Homeobox Domain Of Hu 9e-11
1lfu_P82 Nmr Solution Stucture Of The Extended Pbx Homeodoma 5e-07
1puf_B73 Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bo 7e-07
1b72_B87 Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX Le 8e-07
1b8i_B63 Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX 4e-06
1du6_A64 Solution Structure Of The Truncated Pbx Homeodomain 4e-06
4egc_A559 Crystal Structure Of Mbp-fused Human Six1 Bound To 1e-04
>pdb|3K2A|A Chain A, Crystal Structure Of The Homeobox Domain Of Human Homeobox Protein Meis2 Length = 67 Back     alignment and structure 
Iteration: 1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 43/59 (72%)
Query: 415 LPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPMIEE 473
            P+ + +I RAWLF+H  HPYP++ +K  LA+ TGL+  QV NWFINAR R+ +P I++
Sbjct: 5   FPKVATNIXRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPXIDQ 63
>pdb|2LK2|A Chain A, Solution Nmr Structure Of Homeobox Domain (171-248) Of Human Homeobox Protein Tgif1, Northeast Structural Genomics Consortium Target Hr4411b Length = 89 Back     alignment and structure
>pdb|1X2N|A Chain A, Solution Structure Of The Homeobox Domain Of Human Homeobox Protein Pknox1 Length = 73 Back     alignment and structure
>pdb|2DMN|A Chain A, The Solution Structure Of The Homeobox Domain Of Human Homeobox Protein Tgif2lx Length = 83 Back     alignment and structure
>pdb|1LFU|P Chain P, Nmr Solution Stucture Of The Extended Pbx Homeodomain Bound To Dna Length = 82 Back     alignment and structure
>pdb|1PUF|B Chain B, Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bound To Dna Length = 73 Back     alignment and structure
>pdb|1B72|B Chain B, Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX Length = 87 Back     alignment and structure
>pdb|1B8I|B Chain B, Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX Length = 63 Back     alignment and structure
>pdb|1DU6|A Chain A, Solution Structure Of The Truncated Pbx Homeodomain Length = 64 Back     alignment and structure
>pdb|4EGC|A Chain A, Crystal Structure Of Mbp-fused Human Six1 Bound To Human Eya2 Eya Domain Length = 559 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query673
2dmn_A83 Homeobox protein TGIF2LX; TGFB-induced factor 2-li 5e-38
1b72_B87 Protein (PBX1); homeodomain, DNA, complex, DNA-bin 2e-37
2lk2_A89 Homeobox protein TGIF1; NESG, structural genomics, 8e-37
1puf_B73 PRE-B-cell leukemia transcription factor-1; homeod 3e-35
3k2a_A67 Homeobox protein MEIS2; homeobox domain, DNA-bindi 5e-34
1x2n_A73 Homeobox protein pknox1; homeobox domain, structur 8e-34
1du6_A64 PBX1, homeobox protein PBX1; homeodomain, gene reg 4e-31
1le8_B83 Mating-type protein alpha-2; matalpha2, isothermal 2e-27
1k61_A60 Mating-type protein alpha-2; protein-DNA complex, 3e-27
1mnm_C87 Protein (MAT alpha-2 transcriptional repressor); t 9e-26
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
3nau_A66 Zinc fingers and homeoboxes protein 2; ZHX2, corep 2e-08
2da5_A75 Zinc fingers and homeoboxes protein 3; homeobox do 5e-07
2dn0_A76 Zinc fingers and homeoboxes protein 3; triple home 1e-06
2d5v_A164 Hepatocyte nuclear factor 6; transcription factor, 3e-06
1akh_A61 Protein (mating-type protein A-1); complex (TWO DN 3e-06
2ecb_A89 Zinc fingers and homeoboxes protein 1; homeobox do 5e-06
2dmp_A89 Zinc fingers and homeoboxes protein 2; homeobox do 2e-05
1wi3_A71 DNA-binding protein SATB2; homeodomain, helix-turn 2e-05
2ecc_A76 Homeobox and leucine zipper protein homez; homeobo 1e-04
2cqx_A72 LAG1 longevity assurance homolog 5; homeodomain, D 2e-04
2xsd_C164 POU domain, class 3, transcription factor 1; trans 2e-04
1au7_A146 Protein PIT-1, GHF-1; complex (DNA-binding protein 2e-04
3nar_A96 ZHX1, zinc fingers and homeoboxes protein 1; corep 3e-04
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens} Length = 83 Back     alignment and structure
 Score =  134 bits (340), Expect = 5e-38
 Identities = 31/81 (38%), Positives = 51/81 (62%), Gaps = 1/81 (1%)

Query: 403 GVMRHAWRPQRG-LPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFIN 461
           G    + + ++G LP  SV ILR W+++H    YP++ EK ML+++T LS  Q++NWFIN
Sbjct: 1   GSSGSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFIN 60

Query: 462 ARVRLWKPMIEEMYKEEFGDT 482
           AR R+   M+++   +  G +
Sbjct: 61  ARRRILPDMLQQRRNDPSGPS 81
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P Length = 87 Back     alignment and structure
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B* Length = 73 Back     alignment and structure
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} Length = 67 Back     alignment and structure
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 73 Back     alignment and structure
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1 Length = 64 Back     alignment and structure
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* Length = 83 Back     alignment and structure
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 Length = 87 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} Length = 66 Back     alignment and structure
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 76 Back     alignment and structure
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Length = 164 Back     alignment and structure
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* Length = 61 Back     alignment and structure
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 89 Back     alignment and structure
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 71 Back     alignment and structure
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 76 Back     alignment and structure
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Length = 72 Back     alignment and structure
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus} Length = 164 Back     alignment and structure
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1 Length = 146 Back     alignment and structure
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens} Length = 96 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query673
2lk2_A89 Homeobox protein TGIF1; NESG, structural genomics, 99.7
2dmn_A83 Homeobox protein TGIF2LX; TGFB-induced factor 2-li 99.69
3k2a_A67 Homeobox protein MEIS2; homeobox domain, DNA-bindi 99.68
1x2n_A73 Homeobox protein pknox1; homeobox domain, structur 99.66
1du6_A64 PBX1, homeobox protein PBX1; homeodomain, gene reg 99.62
1b72_B87 Protein (PBX1); homeodomain, DNA, complex, DNA-bin 99.6
1puf_B73 PRE-B-cell leukemia transcription factor-1; homeod 99.59
1k61_A60 Mating-type protein alpha-2; protein-DNA complex, 99.59
1le8_B83 Mating-type protein alpha-2; matalpha2, isothermal 99.56
1mnm_C87 Protein (MAT alpha-2 transcriptional repressor); t 99.55
2ecc_A76 Homeobox and leucine zipper protein homez; homeobo 99.44
1akh_A61 Protein (mating-type protein A-1); complex (TWO DN 99.41
1bw5_A66 ISL-1HD, insulin gene enhancer protein ISL-1; DNA- 99.39
2cra_A70 Homeobox protein HOX-B13; DNA-binding, transcripti 99.36
2dmu_A70 Homeobox protein goosecoid; homeobox domain, three 99.36
1ig7_A58 Homeotic protein MSX-1; helix-turn-helix, transcri 99.35
2da2_A70 Alpha-fetoprotein enhancer binding protein; homeob 99.35
2da4_A80 Hypothetical protein DKFZP686K21156; homeobox doma 99.35
2dmq_A80 LIM/homeobox protein LHX9; homeobox domain, three 99.34
2da1_A70 Alpha-fetoprotein enhancer binding protein; homeob 99.34
1jgg_A60 Segmentation protein EVEN-skipped; homeodomain, pr 99.34
2hdd_A61 Protein (engrailed homeodomain Q50K); DNA binding, 99.34
2da3_A80 Alpha-fetoprotein enhancer binding protein; homeob 99.34
2e1o_A70 Homeobox protein PRH; DNA binding protein, structu 99.33
2dmt_A80 Homeobox protein BARH-like 1; homeobox domain, thr 99.33
2djn_A70 Homeobox protein DLX-5; structural genomics, NPPSF 99.33
2l7z_A73 Homeobox protein HOX-A13; gene regulation; NMR {Ho 99.33
1fjl_A81 Paired protein; DNA-binding protein, paired BOX, t 99.32
2h1k_A63 IPF-1, pancreatic and duodenal homeobox 1, homeodo 99.32
1nk2_P77 Homeobox protein VND; homeodomain, DNA-binding pro 99.32
2k40_A67 Homeobox expressed in ES cells 1; thermostable hom 99.32
2dms_A80 Homeobox protein OTX2; homeobox domain, three heli 99.31
2vi6_A62 Homeobox protein nanog; homeodomain, DNA-binding, 99.3
3a02_A60 Homeobox protein aristaless; homeodomain, developm 99.3
3rkq_A58 Homeobox protein NKX-2.5; helix-turn-helix, DNA bi 99.29
2ecb_A89 Zinc fingers and homeoboxes protein 1; homeobox do 99.28
2cue_A80 Paired box protein PAX6; homeobox domain, transcri 99.28
2kt0_A84 Nanog, homeobox protein nanog; homeodomain, struct 99.28
2dn0_A76 Zinc fingers and homeoboxes protein 3; triple home 99.27
1zq3_P68 PRD-4, homeotic bicoid protein; protein-DNA comple 99.26
1puf_A77 HOX-1.7, homeobox protein HOX-A9; homeodomian, pro 99.26
1ahd_P68 Antennapedia protein mutant; DNA binding protein/D 99.26
1ftt_A68 TTF-1 HD, thyroid transcription factor 1 homeodoma 99.26
1wh5_A80 ZF-HD homeobox family protein; structural genomics 99.26
3nau_A66 Zinc fingers and homeoboxes protein 2; ZHX2, corep 99.26
3a03_A56 T-cell leukemia homeobox protein 2; homeodomain, d 99.24
1yz8_P68 Pituitary homeobox 2; DNA binding protein, transcr 99.24
2da5_A75 Zinc fingers and homeoboxes protein 3; homeobox do 99.24
3a01_A93 Homeodomain-containing protein; homeodomain, prote 99.24
2ly9_A74 Zinc fingers and homeoboxes protein 1; structural 99.23
2m0c_A75 Homeobox protein aristaless-like 4; structural gen 99.23
1b8i_A81 Ultrabithorax, protein (ultrabithorax homeotic pro 99.23
3nar_A96 ZHX1, zinc fingers and homeoboxes protein 1; corep 99.23
2hi3_A73 Homeodomain-only protein; transcription; NMR {Mus 99.23
1uhs_A72 HOP, homeodomain only protein; structural genomics 99.22
2cuf_A95 FLJ21616 protein; homeobox domain, hepatocyte tran 99.22
3d1n_I151 POU domain, class 6, transcription factor 1; prote 99.22
2d5v_A164 Hepatocyte nuclear factor 6; transcription factor, 99.21
2r5y_A88 Homeotic protein sex combs reduced; homeodomain; H 99.18
2dmp_A89 Zinc fingers and homeoboxes protein 2; homeobox do 99.17
1b72_A97 Protein (homeobox protein HOX-B1); homeodomain, DN 99.15
2e19_A64 Transcription factor 8; homeobox domain, structura 99.13
1au7_A146 Protein PIT-1, GHF-1; complex (DNA-binding protein 99.11
1wh7_A80 ZF-HD homeobox family protein; homeobox domain, st 99.11
1e3o_C160 Octamer-binding transcription factor 1; transcript 99.08
2xsd_C164 POU domain, class 3, transcription factor 1; trans 99.07
2da6_A102 Hepatocyte nuclear factor 1-beta; homeobox domain, 99.07
2l9r_A69 Homeobox protein NKX-3.1; structural genomics, nor 99.07
2cqx_A72 LAG1 longevity assurance homolog 5; homeodomain, D 99.06
1lfb_A99 Liver transcription factor (LFB1); transcription r 99.0
3l1p_A155 POU domain, class 5, transcription factor 1; POU, 98.98
1wi3_A71 DNA-binding protein SATB2; homeodomain, helix-turn 98.96
1x2m_A64 LAG1 longevity assurance homolog 6; homeobox domai 98.94
1ic8_A194 Hepatocyte nuclear factor 1-alpha; transcription r 98.89
1mh3_A421 Maltose binding-A1 homeodomain protein chimera; MA 98.85
2h8r_A221 Hepatocyte nuclear factor 1-beta; trasncription fa 98.84
2da7_A71 Zinc finger homeobox protein 1B; homeobox domain, 98.71
2nzz_A37 Penetratin conjugated GAS (374-394) peptide; confo 95.76
2ys9_A70 Homeobox and leucine zipper protein homez; homeodo 93.24
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens} Back     alignment and structure
Probab=99.70  E-value=9e-18  Score=147.04  Aligned_cols=61  Identities=52%  Similarity=0.880  Sum_probs=57.8

Q ss_pred             CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhccchhHHH
Q 005863          413 RGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLWKPMIEE  473 (673)
Q Consensus       413 R~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~RlkKp~i~e  473 (673)
                      .-||++++.+|++||.+|+.||||++++|..||++|||+..||+|||+|+|+|.|++++++
T Consensus        10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~   70 (89)
T 2lk2_A           10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK   70 (89)
T ss_dssp             CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence            3599999999999999999999999999999999999999999999999999999987754
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens} Back     alignment and structure
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P Back     alignment and structure
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B* Back     alignment and structure
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 Back     alignment and structure
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* Back     alignment and structure
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 Back     alignment and structure
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* Back     alignment and structure
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1 Back     alignment and structure
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 Back     alignment and structure
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A Back     alignment and structure
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A* Back     alignment and structure
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B Back     alignment and structure
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus} Back     alignment and structure
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A Back     alignment and structure
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens} Back     alignment and structure
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus} Back     alignment and structure
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A Back     alignment and structure
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens} Back     alignment and structure
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1 Back     alignment and structure
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A Back     alignment and structure
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A Back     alignment and structure
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1 Back     alignment and structure
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 Back     alignment and structure
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} Back     alignment and structure
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens} Back     alignment and structure
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P Back     alignment and structure
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster} Back     alignment and structure
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A* Back     alignment and structure
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens} Back     alignment and structure
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens} Back     alignment and structure
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Back     alignment and structure
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A* Back     alignment and structure
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1 Back     alignment and structure
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 Back     alignment and structure
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A Back     alignment and structure
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus} Back     alignment and structure
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A Back     alignment and structure
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A Back     alignment and structure
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 Back     alignment and structure
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A Back     alignment and structure
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens} Back     alignment and structure
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A Back     alignment and structure
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 673
d1x2na162 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (H 1e-19
d1pufb_73 a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 96 1e-18
d1k61a_60 a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast 2e-16
d2cqxa159 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 3e-08
d1x2ma152 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 2e-07
d1le8a_53 a.4.1.1 (A:) Mating type protein A1 Homeodomain {B 2e-07
d1wh7a_80 a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Tha 4e-06
d1b72a_88 a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo 4e-06
d1wi3a_71 a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Hom 1e-05
d1bw5a_66 a.4.1.1 (A:) Insulin gene enhancer protein isl-1 { 1e-05
d2cuea168 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (H 2e-05
d1ocpa_67 a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus mus 3e-05
d2e1oa157 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo 4e-05
d1s7ea150 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {M 6e-05
d9anta_56 a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila 7e-05
d1p7ia_53 a.4.1.1 (A:) Engrailed Homeodomain {Drosophila mel 1e-04
d1fjla_65 a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila 1e-04
d2ecba176 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes prote 1e-04
d1au7a158 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Ra 1e-04
d2craa158 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human ( 2e-04
d1yz8p160 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo 4e-04
d1ftta_68 a.4.1.1 (A:) Thyroid transcription factor 1 homeod 4e-04
d1uhsa_72 a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse 6e-04
d1e3oc157 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human ( 6e-04
d1pufa_77 a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus m 6e-04
d1jgga_57 a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly ( 0.001
d1zq3p167 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fl 0.002
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Length = 62 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein pknox1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.9 bits (200), Expect = 1e-19
 Identities = 29/58 (50%), Positives = 42/58 (72%), Gaps = 1/58 (1%)

Query: 410 RPQRG-LPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRL 466
           + +RG LP+ + +++R+WLF+H  HPYP + EK  +A QT L+  QV NWFINAR R+
Sbjct: 3   KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRI 60
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Length = 73 Back     information, alignment and structure
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 60 Back     information, alignment and structure
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 59 Back     information, alignment and structure
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 53 Back     information, alignment and structure
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 80 Back     information, alignment and structure
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Back     information, alignment and structure
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 66 Back     information, alignment and structure
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Length = 67 Back     information, alignment and structure
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Length = 57 Back     information, alignment and structure
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 56 Back     information, alignment and structure
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 53 Back     information, alignment and structure
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 65 Back     information, alignment and structure
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 58 Back     information, alignment and structure
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Length = 58 Back     information, alignment and structure
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 68 Back     information, alignment and structure
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Length = 72 Back     information, alignment and structure
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 57 Back     information, alignment and structure
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77 Back     information, alignment and structure
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 57 Back     information, alignment and structure
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 67 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query673
d1x2na162 Homeobox protein pknox1 {Human (Homo sapiens) [Tax 99.71
d1pufb_73 pbx1 {Human (Homo sapiens) [TaxId: 9606]} 99.71
d1k61a_60 mat alpha2 Homeodomain {Baker's yeast (Saccharomyc 99.67
d1wi3a_71 DNA-binding protein SATB2 {Human (Homo sapiens) [T 99.43
d1le8a_53 Mating type protein A1 Homeodomain {Baker's yeast 99.42
d2craa158 Homeobox protein hox-b13 {Human (Homo sapiens) [Ta 99.41
d1au7a158 Pit-1 POU homeodomain {Rat (Rattus norvegicus) [Ta 99.4
d2e1oa157 Homeobox protein prh {Human (Homo sapiens) [TaxId: 99.39
d1bw5a_66 Insulin gene enhancer protein isl-1 {Rat (Rattus n 99.39
d1p7ia_53 Engrailed Homeodomain {Drosophila melanogaster [Ta 99.38
d1ocpa_67 Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId 99.38
d1ig7a_58 Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10 99.38
d1fjla_65 Paired protein {Fruit fly (Drosophila melanogaster 99.37
d2ecca176 Homeobox-leucine zipper protein Homez {Human (Homo 99.37
d1e3oc157 Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId 99.37
d1yz8p160 Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 99.36
d1vnda_77 VND/NK-2 protein {Fruit fly (Drosophila melanogast 99.36
d1pufa_77 Homeobox protein hox-a9 {Mouse (Mus musculus) [Tax 99.35
d2ecba176 Zinc fingers and homeoboxes protein 1, ZHX1 {Human 99.35
d1jgga_57 Even-skipped homeodomain {Fruit fly (Drosophila me 99.34
d9anta_56 Antennapedia Homeodomain {Drosophila melanogaster 99.33
d1zq3p167 Homeotic bicoid protein {Fruit fly (Drosophila mel 99.33
d1ftta_68 Thyroid transcription factor 1 homeodomain {Rat (R 99.31
d2cuea168 Paired box protein pax6 {Human (Homo sapiens) [Tax 99.3
d1x2ma152 Lag1 longevity assurance homolog 6, LASS6 {Mouse ( 99.27
d1s7ea150 Hepatocyte nuclear factor 6 {Mouse (Mus musculus) 99.26
d1b72a_88 Homeobox protein hox-b1 {Human (Homo sapiens) [Tax 99.26
d2cufa182 Homeobox-containing protein 1, HMBOX1 (Flj21616) { 99.25
d1uhsa_72 Homeodomain-only protein, Hop {Mouse (Mus musculus 99.23
d2cqxa159 LAG1 longevity assurance homolog 5, LASS5 {Mouse ( 99.18
d1wh7a_80 ZF-HD homeobox protein At4g24660 {Thale cress (Ara 99.15
d1lfba_78 Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rat 99.09
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein pknox1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.3e-18  Score=137.61  Aligned_cols=59  Identities=46%  Similarity=0.830  Sum_probs=55.1

Q ss_pred             CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChHhHhhhhhhhHhhcc
Q 005863          409 WRPQRGLPESSVSILRAWLFEHFLHPYPNDSEKIMLAKQTGLSKNQVANWFINARVRLW  467 (673)
Q Consensus       409 ~R~rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWF~NaR~Rlk  467 (673)
                      +|+|..||++++.+|+.||.+|..||||+.+||..||.+|||+.+||.|||+|+|+|+.
T Consensus         3 krkR~~~~~~~~~iL~~wf~~~~~nPyPs~~e~~~La~~~~l~~~qI~~WF~N~R~R~l   61 (62)
T d1x2na1           3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRIL   61 (62)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHhHHHHHHHHHHhc
Confidence            34556699999999999999999999999999999999999999999999999999964
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]} Back     information, alignment and structure