Citrus Sinensis ID: 005867

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670---
Protein Sequence
MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGRR
Secondary Structure (PSIPRED)
ccEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccEEEEEcccccccccEEEEHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHccccEEEccccccHHHHHHHHHcccccEEEEccHHHHHHHcccccccccEEEEEEcccccHHHHHHHHHcccEEEEHHHHHHHcccccccccccccccEEEEEEcccccccccHHHHcHHHHHHHHHHHHHcccccccccccccEEEEEcHHHHHHHHHHHHHHHHHccEEEEccccHHHHHHHHHHHcccEEcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHccccEEEcccccccccccccccccccccccccccccccEEEEEEcccccccccccccccEEEEccccccHHcccccccccccccccccccccEEEEcccccEEEEcccccHHHcccccEEccHHHHHHHHccccccEEEEEEEccccEEEEEEEccHHHHHHHHHHccccccHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccccccccccccccEEcccccccccccccccHHHHHHHHHHHHHHccccccccEEEccccccccEEEEcHHHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHccEEEEcccccccHHHHHHHEccccEEEEEEccHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHcccEEEEHHHHHHHcccccccccccccccEEEEEEEccccccccEEEEccHHHHHHHHHHHHHHHHccccccHccEEEEHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHcccccccHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHccEEEEccccccccccEEEEccccccccccccccccccEEEEEEcccccccccccccccEEEEEcccEEEcccccHHHHHHHHHcccccccccccEccccEEEEEEccccEEEEccccEEcccHHHHEEEccccccEEEEEccccccEEEEEEcccHHHHHHHHHHccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MKIFAAQVeegkegkdgkpsvgpvyrnllasngfpsvdsdlntaWDIFSMSVQkypgnrmlgwrpfvdgkfgpyVWKTYKEVYEEVLQIVSALRAsgaepgcrvgiygancPQWVEAMEACNALSLICvplydtlgpgavnfILDHAEIDFVFVQDKKVkellspdcrsaqRLRVMVCFTSLTAEQKEMAVqtgikpyswdeflhlgkvnemeilppqpfnictimytsgtsgdpkgvvLTHETIATFVSGVDLFLDQfedkmtvddvylSFLPLAHILDRVIEEYFFRRGasvgyyhgdLNALRDDLMELKptllagvpRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMgykqreasplADLLAFRKVKARLGGRLRlvisggaplstEVEEFLRVTCCAFLVqgygltetcgpttvcfpdemcmvgtagpvsvyselrleevpemgysplddppcgevcvrgktlfsgyyknpdltresiidgwfhtgdigqilpngVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPceedtkkwaysnghagSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFehikgvildprpfdmERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGRR
Flexible Loop (DISEMBL)
MKIFAAqveegkegkdgkpsvGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEllspdcrsaqrlRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKaleelrplrRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEmgysplddppcgEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKgvildprpfdMERDLVTATLKKKRNKLLIYYQVEIdqlyeklapgrr
Low Complexity Region (SEG)
MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGRR
Disordered region (IsUnstruct)
***********************VYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYE*******
Disordered Region (DISOPRED)
*KIFAAQ****************VYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL**********PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL**KL*****
Disordered Region (DISEMBL)
*****************KPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGRR
Disordered Region (DISPRO)
*KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAP***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	673	2.2.26 [Sep-21-2011]
O22898	660	Long chain acyl-CoA synth	yes	no	0.974	0.993	0.680	0.0
Q9T0A0	666	Long chain acyl-CoA synth	no	no	0.971	0.981	0.499	0.0
Q9T009	666	Long chain acyl-CoA synth	no	no	0.977	0.987	0.493	0.0
Q9C7W4	665	Long chain acyl-CoA synth	no	no	0.967	0.978	0.496	0.0
Q9XIA9	665	Long chain acyl-CoA synth	no	no	0.961	0.972	0.462	1e-173
Q8LPS1	701	Long chain acyl-CoA synth	no	no	0.898	0.863	0.398	1e-114
Q8LKS5	700	Long chain acyl-CoA synth	no	no	0.897	0.862	0.385	1e-113
Q1ZXQ4	673	Fatty acyl-CoA synthetase	yes	no	0.950	0.950	0.350	1e-111
Q55DR6	667	Fatty acyl-CoA synthetase	no	no	0.898	0.907	0.368	1e-107
Q9ULC5	683	Long-chain-fatty-acid--Co	yes	no	0.895	0.882	0.353	1e-105

>sp|O22898|LACS1_ARATH Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana GN=LACS1 PE=2 SV=1

 Score =  966 bits (2497), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/669 (68%), Positives = 549/669 (82%), Gaps = 13/669 (1%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAA+VEEG +G DGKPSVGPVYRNLL+  GFP +DS++ TAWDIFS SV+K+P N M
Sbjct: 1   MKSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR  VD K GPY+WKTYKEVYEEVLQI SALRA+GAEPG RVGIYG NCPQW+ AMEA
Sbjct: 61  LGWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A +LICVPLYDTLG GAV++I++HAEIDFVFVQD K+K LL PDC+ A+RL+ +V FT
Sbjct: 121 CAAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           +++ E    A + G+K YSW +FLH+G+    +  PP+ FNICTIMYTSGTSGDPKGVVL
Sbjct: 181 NVSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           TH+ +ATFV G+DL++DQFEDKMT DDVYLSFLPLAHILDR+ EEYFFR+GASVGYYHG+
Sbjct: 241 THQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGN 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LN LRDD+ ELKPT LAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYK+KLAW+N GY
Sbjct: 301 LNVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
              +ASP+AD +AFRK++ +LGGR+RL++SGGAPLS E+EEFLRVTCC F+VQGYGLTET
Sbjct: 361 SHSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
            G T + FPDEMCM+GT G  +VY+E+RLEEV EMGY PL + P GE+C+RG+ +FSGYY
Sbjct: 421 LGGTALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LT E + DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALE+LEN++    
Sbjct: 481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEHLENIFGQNS 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           +++DIWVYGDS KSMLVAVVVP  E   +WA   G    F ELCS  +L+ +I+SELK+ 
Sbjct: 541 VVQDIWVYGDSFKSMLVAVVVPNPETVNRWAKDLGFTKPFEELCSFPELKEHIISELKST 600

Query: 601 AERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 660
           AE+NK             LR FE+IK V ++ +PFD+ERDLVTATLK +RN LL YYQV+
Sbjct: 601 AEKNK-------------LRKFEYIKAVTVETKPFDVERDLVTATLKNRRNNLLKYYQVQ 647

Query: 661 IDQLYEKLA 669
           ID++Y KLA
Sbjct: 648 IDEMYRKLA 656

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in both the wax and cutin pathways. Preferentially uses palmitate, palmitoleate, linoleate and eicosenoate. Seems to have a specific activity against very long-chain fatty acid (VLCFA) class with acids longer than 24 carbons (C(24)).
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3

>sp|Q9T0A0|LACS4_ARATH Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana GN=LACS4 PE=2 SV=1

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/667 (49%), Positives = 459/667 (68%), Gaps = 13/667 (1%)

Query: 2   KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
           K +  QVEEGKEG DG+PSVGPVYR++ A +GFP     +++ WD+F MSV+KYP N ML
Sbjct: 5   KKYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPML 64

Query: 62  GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           G R  VDGK G YVW+TY+EVY+ V+++ ++LR+ G +   + GIYGAN P+W+ +MEAC
Sbjct: 65  GRREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124

Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
           NA  L CVPLYDTLG  AV FI+ H+E+  VFV++KK+ EL      S + ++ +V F  
Sbjct: 125 NAHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGG 184

Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
           ++ EQKE A   G+  Y+WDEFL LG+  + ++   +  +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244

Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
           +E+I T ++GV   L    + +TV DVYLS+LPLAHI DRVIEE F + GA++G++ GD+
Sbjct: 245 NESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDV 304

Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
             L +DL ELKPT+   VPRV ++++ G++K L +   L++ IFD+ + YK  +M  G  
Sbjct: 305 KLLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQS 364

Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
             EASPL D L F KVK  LGG +R+++SG APL++ VE FLRV  C  ++QGYGLTE+C
Sbjct: 365 HVEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424

Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
             T V  PDE+ M+GT GP     ++RLE VPEM Y  L     GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYK 484

Query: 482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
             DLT+E +IDGW HTGD+G+  P+G +KIIDRKKN+ K+SQGEYVA+E +EN+Y     
Sbjct: 485 REDLTKEVLIDGWLHTGDVGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQA 544

Query: 542 IEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 601
           ++ +WVYG+S +S L+A+  P +   ++WA  NG +G +  LC   + + +IL EL   A
Sbjct: 545 VDSVWVYGNSFESFLIAIANPNQHILERWAAENGVSGDYDALCQNEKAKEFILGELVKMA 604

Query: 602 ERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI 661
           +  K             ++GFE IK + LDP PFDMERDL+T T KKKR +LL YYQ  I
Sbjct: 605 KEKK-------------MKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVI 651

Query: 662 DQLYEKL 668
           D++Y+ +
Sbjct: 652 DEMYKTI 658

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9T009|LACS5_ARATH Long chain acyl-CoA synthetase 5 OS=Arabidopsis thaliana GN=LACS5 PE=2 SV=1

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/675 (49%), Positives = 447/675 (66%), Gaps = 17/675 (2%)

Query: 2   KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
           K F  +VE  KE  DG PSVGPVYR+  A NGFP+    + + WDIF  +V+KYP NRML
Sbjct: 5   KRFIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNRML 64

Query: 62  GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           G R   +GK G YVWKTYKEVY+ V+++ ++LR+ G + G + GIYG NC +W+ +MEAC
Sbjct: 65  GRREISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISMEAC 124

Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
           NA  L CVPLYDTLG GAV FI+ HAE+   FV++KK+ EL      S + ++ +V F  
Sbjct: 125 NAHGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSFGG 184

Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
           +  EQKE A + G+  +SWDEFL LG+  + E+   +P +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VKPEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVMIS 244

Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
           +E+I T  +GV  FL      ++  DVY+S+LPLAH+ DR IEE   + G S+G++ GD+
Sbjct: 245 NESIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRGDV 304

Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
             L +DL ELKP++   VPRV ++++ G+++ L      ++++FD  + YK   M  G  
Sbjct: 305 KLLIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKGQS 364

Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
              ASP  D L F KVK  LGG +R+++SG APL++ +E FLRV  C  ++QGYGLTE+C
Sbjct: 365 HVAASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTESC 424

Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
             T   FPDE+ M+GT GP     ++RLE VPEM Y  L   P GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGYYK 484

Query: 482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
             DLT+E  IDGW HTGD+G+  PNG +KIIDRKKN+ K++QGEYVA+E LENVY    +
Sbjct: 485 REDLTKEVFIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLAQGEYVAVENLENVYSQVEV 544

Query: 542 IEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 601
           IE IWVYG+S +S LVA+  P ++  ++WA  NG  G F  +C   + + +IL EL   A
Sbjct: 545 IESIWVYGNSFESFLVAIANPAQQTLERWAVENGVNGDFNSICQNAKAKAFILGELVKTA 604

Query: 602 ERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI 661
           + NK             L+GFE IK V L+P  FDMERDL+T T KKKR +LL YYQ  I
Sbjct: 605 KENK-------------LKGFEIIKDVHLEPVAFDMERDLLTPTYKKKRPQLLKYYQNVI 651

Query: 662 DQLY----EKLAPGR 672
            ++Y    E LA G+
Sbjct: 652 HEMYKTTKESLASGQ 666

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9C7W4|LACS3_ARATH Long chain acyl-CoA synthetase 3 OS=Arabidopsis thaliana GN=LACS3 PE=2 SV=1

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/665 (49%), Positives = 449/665 (67%), Gaps = 14/665 (2%)

Query: 4   FAAQVEEGKEGKDG-KPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLG 62
           +  +VE+GK+G DG  PSVGPVYR++ A +GFP    DL +AWDIF +SV+K P N MLG
Sbjct: 6   YIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPNNPMLG 65

Query: 63  WRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122
            R  VDGK G YVW+TYKEV+  V+++ +++R  G   G + GIYGAN P+W+ +MEACN
Sbjct: 66  RREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIISMEACN 125

Query: 123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182
           A  L CVPLYDTLG GA+ FI+ HAE+   F ++ K+ ELL    +S + L+ +V F  +
Sbjct: 126 AHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIVSFGEV 185

Query: 183 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
           T  Q+  A +  +  YSWD+FL LG+    E+   +  ++CTIMYTSGT+GDPKGV+LT+
Sbjct: 186 TNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKGVLLTN 245

Query: 243 ETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLN 302
           E+I   + GV   L   ++++T  DVYLS+LPLAHI DRVIEE      AS+G++ GD+ 
Sbjct: 246 ESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFWRGDVK 305

Query: 303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ 362
            L +D+  LKPT+   VPRV E+I+ G+++ L +   +++++F+  +KYK   M  G   
Sbjct: 306 ILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNMEKGQPH 365

Query: 363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG 422
            +ASP+AD + F+KVK  LGG +RL++SG APL+  +E FLRV  CA ++QGYGLTE+CG
Sbjct: 366 EQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGLTESCG 425

Query: 423 PTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 482
            T V  P+E+ M+GT GP     ++RLE VPEMGY  L   P GE+C+RGKTLFSGYYK 
Sbjct: 426 GTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFSGYYKR 485

Query: 483 PDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
            DLT+E  IDGW HTGD+G+  P+G +KIIDRKKN+ K+SQGEYVA+E LEN+Y     I
Sbjct: 486 EDLTQEVFIDGWLHTGDVGEWQPDGAMKIIDRKKNIFKLSQGEYVAVENLENIYSHVAAI 545

Query: 543 EDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAE 602
           E IWVYG+S +S LVAVV P +   + WA  +  +G F  +C   + + ++L E    A+
Sbjct: 546 ESIWVYGNSYESYLVAVVCPSKIQIEHWAKEHKVSGDFESICRNQKTKEFVLGEFNRVAK 605

Query: 603 RNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID 662
             K             L+GFE IKGV LD  PFDMERDL+T + K KR +LL YYQ EID
Sbjct: 606 DKK-------------LKGFELIKGVHLDTVPFDMERDLITPSYKMKRPQLLKYYQKEID 652

Query: 663 QLYEK 667
           ++Y+K
Sbjct: 653 EMYKK 657

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9XIA9|LACS2_ARATH Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana GN=LACS2 PE=2 SV=1

 Score =  610 bits (1572), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 306/662 (46%), Positives = 420/662 (63%), Gaps = 15/662 (2%)

Query: 8   VEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV 67
           VEEG+      PS GPVYR   A +G   + +D+++ W  FS +V+KYP  +MLG R   
Sbjct: 11  VEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQRVTT 70

Query: 68  DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127
           D K GPY W TYKE ++  ++I SA+R+ G +PG   GIYGANCP+W+ AMEAC +  + 
Sbjct: 71  DSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGIT 130

Query: 128 CVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK 187
            VPLYD+LG  AV FI++HAE+  VFVQ+K V  +LS     +  L+ +V F  +++ QK
Sbjct: 131 YVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQK 190

Query: 188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT 247
           E A    +  +SW+EF  +G ++E  +   +  +ICTIMYTSGT+G+PKGV+L +  I+ 
Sbjct: 191 EEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISV 250

Query: 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDD 307
            V  +D  L+  +      DV+ S+LPLAH  D+V+E YF  RG+SVGY+ GD+  L DD
Sbjct: 251 QVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDD 310

Query: 308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 367
           +  LKPT+  GVPRV++K++ GI + +     +R+++FD  Y YKL  M  G+ Q EASP
Sbjct: 311 VQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEEASP 370

Query: 368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427
             D L F K+K  LGGR  +++SG APL   VEEFLR+   + L QGYGLTE+CG +   
Sbjct: 371 RLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGGSFTT 430

Query: 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLD-DPPCGEVCVRGKTLFSGYYKNPDLT 486
                 MVGT G      E RL  VPEMGY     D P GE+C+RG ++FSGY+K  DLT
Sbjct: 431 LAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKRQDLT 490

Query: 487 RESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIW 546
            + +IDGWFHTGDIG+   +G +KIIDRKKN+ K+SQGEYVA+E LEN Y   P+I  IW
Sbjct: 491 DQVLIDGWFHTGDIGEWQEDGSMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIAQIW 550

Query: 547 VYGDSLKSMLVAVVVPCEEDTKKWAYSNGHA-GSFLELCSLVQLQNYILSELKNAAERNK 605
           VYG+S +S LV VVVP  +  + WA  N  +   F  LC  ++ Q Y L EL + A++ +
Sbjct: 551 VYGNSFESFLVGVVVPDRKAIEDWAKLNYQSPNDFESLCQNLKAQKYFLDELNSTAKQYQ 610

Query: 606 VIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY 665
                        L+GFE +K + L+P PFD+ERDL+T T K KR +LL +Y+  +DQLY
Sbjct: 611 -------------LKGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLQHYKGIVDQLY 657

Query: 666 EK 667
            +
Sbjct: 658 SE 659

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in the cutin pathway. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Required for repression of lateral root formation through its role in cutin biosynthesis and subsequent aerial tissues permeability.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal OS=Arabidopsis thaliana GN=LACS6 PE=1 SV=1

 Score =  414 bits (1064), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 253/635 (39%), Positives = 347/635 (54%), Gaps = 30/635 (4%)

Query: 40  DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE 99
           D+ T  D F  +V  +   + LG R  VDG  G Y W TY E       + S L   G  
Sbjct: 82  DIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGLVHHGIP 141

Query: 100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV 159
            G  VGIY  N P+W+    AC++ S + VPLYDTLGP AV FI++HA +  +F   + +
Sbjct: 142 MGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIFCVAETL 201

Query: 160 KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT-GIKPYSWDEFLHLGKVNEMEILPPQ 218
             LLS  C S      +V       E       + G+K  S+   L+ G+ N     PP+
Sbjct: 202 NSLLS--CLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQRFFPPK 259

Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
           P ++ TI YTSGT+G PKGVVLTH  +   V+G       F  K    DVY+S+LPLAHI
Sbjct: 260 PDDVATICYTSGTTGTPKGVVLTHANLIANVAGS-----SFSVKFFSSDVYISYLPLAHI 314

Query: 279 LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
            +R  +      G +VG+Y GD   L DDL  L+PT+ + VPR++ +I+ GI  A++   
Sbjct: 315 YERANQILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTSG 374

Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
            L+ R+F+A Y  K   +  G   + ASP+ D L F K+K RLGGR+R + SG +PLS E
Sbjct: 375 GLKERLFNAAYNAKKQALLNG---KSASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSPE 431

Query: 399 VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAGPVSVYSELRLEEVPEMGY 457
           V EFL+V     + +GYG+TET     +   DE   + G  G  +   E++L +VPEM Y
Sbjct: 432 VMEFLKVCFGGRVTEGYGMTETS--CVISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNY 489

Query: 458 SPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRK 515
           +  D P P GE+CVRG  +F+GYYK+   T+E I  DGW HTGDIG  LP G +KIIDRK
Sbjct: 490 TSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPGGRLKIIDRK 549

Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNG 575
           KN+ K++QGEY+A E +ENVY     +   ++YGDS  S LVAVV    +  K WA S G
Sbjct: 550 KNIFKLAQGEYIAPEKIENVYAKCKFVGQCFIYGDSFNSSLVAVVSVDPDVLKSWAASEG 609

Query: 576 -HAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRP 634
              G   ELC+  +++  +LS++       +             LRGFE  K V L   P
Sbjct: 610 IKGGDLRELCNNPRVKAAVLSDMDTVGREAQ-------------LRGFEFAKAVTLVLEP 656

Query: 635 FDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA 669
           F +E  L+T T K KR +   Y+   I  +Y++L 
Sbjct: 657 FTLENGLLTPTFKIKRPQAKEYFAEAITNMYKELG 691

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2

 Score =  411 bits (1056), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 245/636 (38%), Positives = 350/636 (55%), Gaps = 32/636 (5%)

Query: 40  DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE 99
           ++ T  D F  +V+ Y  N+ LG R   DG  G Y W TY E   E   I S L   G  
Sbjct: 82  EIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGLLFHGVN 141

Query: 100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV 159
            G  VG+Y  N P+W+    AC A S + VPLYDTLGP AV F+++HA +  +F   + +
Sbjct: 142 QGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCVPQTL 201

Query: 160 KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQP 219
             LLS        +R++V           +   TG+   S+ + L  G+ +     PP+P
Sbjct: 202 NILLS-FLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHPFSPPKP 260

Query: 220 FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            +I TI YTSGT+G PKGVVLTH  +   V+G  +     E +    DVY+S+LPLAHI 
Sbjct: 261 EDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSV-----EAEFFPSDVYISYLPLAHIY 315

Query: 280 DRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339
           +R  +      G +VG+Y GD+  L DD   L+PT+   VPR++ +I++GI  A++    
Sbjct: 316 ERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSAVKSSGV 375

Query: 340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV 399
           +++R+F+  Y  K   +  G   R  S   D L F K+K +LGGR+R + SG +PLS +V
Sbjct: 376 VKKRLFEIAYNSKKQAIING---RTPSAFWDKLVFNKIKEKLGGRVRFMGSGASPLSPDV 432

Query: 400 EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP 459
            +FLR+     + +GYG+TET    +    D   + G  G  +   E++L +VPEM Y+ 
Sbjct: 433 MDFLRICFGCSVREGYGMTETSCVIS-AMDDGDNLSGHVGSPNPACEVKLVDVPEMNYTS 491

Query: 460 LDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKN 517
            D P P GE+CVRG  +F GYYK+ + TRE +  DGW HTGDIG  LP G +KIIDRKKN
Sbjct: 492 DDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLKIIDRKKN 551

Query: 518 LIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNG-- 575
           + K++QGEY+A E +ENVY     +   +++GDS  S LVA+V    E  K WA S G  
Sbjct: 552 IFKLAQGEYIAPEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKDWAASEGIK 611

Query: 576 --HAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPR 633
             H G   +LC+  +++  +L+E+              D G  + LRGFE  K V L P 
Sbjct: 612 YEHLG---QLCNDPRVRKTVLAEMD-------------DLGREAQLRGFEFAKAVTLVPE 655

Query: 634 PFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA 669
           PF +E  L+T T K KR +   Y+   I ++Y ++A
Sbjct: 656 PFTLENGLLTPTFKIKRPQAKAYFAEAISKMYAEIA 691

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q1ZXQ4|FCSB_DICDI Fatty acyl-CoA synthetase B OS=Dictyostelium discoideum GN=fcsB PE=2 SV=1

 Score =  402 bits (1033), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 235/671 (35%), Positives = 371/671 (55%), Gaps = 31/671 (4%)

Query: 4   FAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSV--DSDLNTAWDIFSMSVQKYPGNRML 61
           +   VE G++ ++G    G + RN   ++   S   D ++ T +D    S +KY   +  
Sbjct: 27  YGQTVEIGEKPENG----GRIRRNSACADHLISFLEDDEIYTLYDSLVKSCKKYGERKCF 82

Query: 62  GWRPF-VDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           G R    +G  G + W +Y    E    I   L   G +P  +VGI+  N  +W+    A
Sbjct: 83  GERKKDSNGNLGKFEWISYNTYLERCEYIQQGLCELGLKPKSKVGIFSKNRLEWLIVHSA 142

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
               S   V  Y+TLG  +++++ +HAEI   F   + +++ L    +  + L+ ++CF 
Sbjct: 143 SFIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSAETLQKTLDI-AKGVKVLKTIICFD 201

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGV 238
           S+  E   +A + G+  Y++DE +  GK    + +  PP P  + TIMYTSGT+G PKGV
Sbjct: 202 SIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKHTPPTPDTLSTIMYTSGTTGPPKGV 261

Query: 239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298
           ++TH+ + + V  V  F+  ++      DV+ S+LP AH+L+RV+    F  GA++G + 
Sbjct: 262 MITHKNLTSVVCAVSDFIKVYDT-----DVHYSYLPYAHVLERVVILAAFHFGAAIGIFS 316

Query: 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
           GD++ +  ++  L PTL  GVPRVFE+I   + K + +   L R +F+  Y  K   +  
Sbjct: 317 GDISNILVEVKLLSPTLFIGVPRVFERIKTNVFKEISKKPALLRTLFNGAYNLKYLSIQH 376

Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
           G+K      + DL+ F K+K  LGG++R+++SG APLS + E FLRV  C  ++QGYG +
Sbjct: 377 GFKLPIIEKVLDLVFFSKIKQALGGKVRVILSGSAPLSFDTEVFLRVVMCCCVLQGYGAS 436

Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
           E CG       D+   VGT GP    +E++L +VPE+GY    +   GEVC+RG ++ SG
Sbjct: 437 EGCGGDACKRLDDES-VGTIGPPFASNEIKLVDVPELGYDSNGEVQTGEVCLRGPSISSG 495

Query: 479 YYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV 538
           YYK+ + TRE   DGWFHTGDIG+   +G + I+DRKKN+ K+SQGEYVA+E +E +   
Sbjct: 496 YYKDEEKTREEFKDGWFHTGDIGRWNRDGSLSIVDRKKNIFKLSQGEYVAVEKIETIVVK 555

Query: 539 APIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELK 598
           +  +E + +YGDS KS ++A++ P  E   +WA S        E+C   + Q++I     
Sbjct: 556 SEYVEQVCIYGDSQKSCVIAIIHPHPESCSEWAGSKKTDKDIKEIC---KNQDFI----- 607

Query: 599 NAAERNKVIFANWDTGC-FSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY 657
                 KV+  +    C  S L GFE  K + L P  F  + +L+T + K KR+++  Y+
Sbjct: 608 ------KVVLDDIIKNCKKSGLHGFEIPKAIHLTPEAFSDQNNLLTPSFKLKRHEIKKYF 661

Query: 658 QVEIDQLYEKL 668
           + EI +LY KL
Sbjct: 662 EDEIKKLYSKL 672

Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q55DR6|FCSA_DICDI Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1

 Score =  390 bits (1003), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 234/635 (36%), Positives = 358/635 (56%), Gaps = 30/635 (4%)

Query: 36  SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV-DGKFGPYVWKTYKEVYEEVLQIVSALR 94
           S D    T +D++   + K   +  LG R  + DGK G Y W +YK+       I SAL 
Sbjct: 48  SPDGKTFTLYDVYR--INKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALV 105

Query: 95  ASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV 154
             G   G R+GI+  N P+WV +  A    SL+ V LY TLG  A+ ++++H+EI  +  
Sbjct: 106 QLGLNKGDRIGIFSINRPEWVLSDMAAMNHSLVPVALYATLGANAIEYVVNHSEISVLLC 165

Query: 155 QDKKVKELLSPDCRSAQRLRVMVCFTSL-TAEQKEMAVQTGIKPYSWDEFLHLGKVNEME 213
           + K V+++LS        ++ +V +  L  A   +      +K Y   +F  LG+ N  +
Sbjct: 166 EGKNVEKILS---MPGTTIKTIVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQ 222

Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
              P P ++CT++YTSG++G+PKGV+LTH  + + V+G +         +  +DV++S+L
Sbjct: 223 HEVPSPEDLCTLLYTSGSTGNPKGVMLTHTNMVSEVAGANFS----PAGVIPEDVHMSYL 278

Query: 274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 333
           PLAH  +R +       G  +G++ G +  L +D+  L+PT L G PRV++++H+ +   
Sbjct: 279 PLAHSFERAVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFT 338

Query: 334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
           +     L++ +F+     K + + +G      +P+ D L F K K RLGGR++ ++SG A
Sbjct: 339 VNNDSWLKKFLFNWGLNSKQSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSGSA 394

Query: 394 PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVP 453
           PL  ++ EFLR   C  +V GYGL+E  G  +V +P++   VG  GP     E++L +VP
Sbjct: 395 PLDPKLAEFLRACFCCPVVSGYGLSENVGGASVAYPEDN-NVGHVGPPLSACEMKLIDVP 453

Query: 454 EMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKI 511
           EM Y   D P P GEVC+RG  +F GY+K+P+ T+E +  DGWFHTGDIG+   NG + I
Sbjct: 454 EMNYFSTDKPCPRGEVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRWNENGTLSI 513

Query: 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWA 571
           IDRKKN+ K+SQGEYVA EYLE+V+  +P    ++VYGDSL S LV VVVP  E  +K  
Sbjct: 514 IDRKKNIFKLSQGEYVAAEYLESVFVRSPFASQVFVYGDSLNSFLVGVVVPDFEVVQKL- 572

Query: 572 YSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDT-GCFSLLRGFEHIKGVIL 630
                A  + EL     + N+  + L  + E  K I +++D     + L GFE +K + +
Sbjct: 573 ----FASKYPEL----DVSNH--ATLAKSKELYKEILSSFDACAAEAKLHGFEKLKHIYV 622

Query: 631 DPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY 665
           +  PF  E +L+T + K KR +L   YQ  ID LY
Sbjct: 623 EHEPFTEENNLLTPSFKPKRPQLKERYQTIIDTLY 657

Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. May mediate fatty acid retrieval from the lumen of endosomes into the cytoplasm.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9ULC5|ACSL5_HUMAN Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapiens GN=ACSL5 PE=1 SV=1

 Score =  382 bits (980), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 225/637 (35%), Positives = 353/637 (55%), Gaps = 34/637 (5%)

Query: 39  SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG- 97
           SD  T +++F   +        LG+R        PY W +YK+V +    + S L   G 
Sbjct: 72  SDAKTMYEVFQRGLAVSDNGPCLGYRK----PNQPYRWLSYKQVSDRAEYLGSCLLHKGY 127

Query: 98  -AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156
            + P   VGI+  N P+W+ +  AC   S++ VPLYDTLGP A+  I++ A+I  V    
Sbjct: 128 KSSPDQFVGIFAQNRPEWIISELACYTYSMVAVPLYDTLGPEAIVHIVNKADIAMVICDT 187

Query: 157 KKVKELLSPDCRSA--QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI 214
            +   +L  +        L+V++       + K+   ++GI+  S  +  +LGK +  + 
Sbjct: 188 PQKALVLIGNVEKGFTPSLKVIILMDPFDDDLKQRGEKSGIEILSLYDAENLGKEHFRKP 247

Query: 215 LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSF 272
           +PP P ++  I +TSGT+GDPKG ++TH+ I   VS    FL   E     T DDV +S+
Sbjct: 248 VPPSPEDLSVICFTSGTTGDPKGAMITHQNI---VSNAAAFLKCVEHAYEPTPDDVAISY 304

Query: 273 LPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKK 332
           LPLAH+ +R+++   +  GA VG++ GD+  L DD+  LKPTL   VPR+  +I++ ++ 
Sbjct: 305 LPLAHMFERIVQAVVYSCGARVGFFQGDIRLLADDMKTLKPTLFPAVPRLLNRIYDKVQN 364

Query: 333 ALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG 392
             E   PL++ +       K   +  G  + ++    D L F K++  LGGR+R++++G 
Sbjct: 365 --EAKTPLKKFLLKLAVSSKFKELQKGIIRHDS--FWDKLIFAKIQDSLGGRVRVIVTGA 420

Query: 393 APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV 452
           AP+ST V  F R      + + YG TE  G  T   P +        P++  + ++LE+V
Sbjct: 421 APMSTSVMTFFRAAMGCQVYEAYGQTECTGGCTFTLPGDWTSGHVGVPLAC-NYVKLEDV 479

Query: 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511
            +M Y  +++   GEVC++G  +F GY K+P+ T+E++  DGW HTGDIG+ LPNG +KI
Sbjct: 480 ADMNYFTVNNE--GEVCIKGTNVFKGYLKDPEKTQEALDSDGWLHTGDIGRWLPNGTLKI 537

Query: 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWA 571
           IDRKKN+ K++QGEY+A E +EN+Y  +  +  I+V+G+SL+S LV VVVP  +    +A
Sbjct: 538 IDRKKNIFKLAQGEYIAPEKIENIYNRSQPVLQIFVHGESLRSSLVGVVVPDTDVLPSFA 597

Query: 572 YSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILD 631
              G  GSF ELC    ++  IL +L+   +              S L+ FE +K + L 
Sbjct: 598 AKLGVKGSFEELCQNQVVREAILEDLQKIGKE-------------SGLKTFEQVKAIFLH 644

Query: 632 PRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 668
           P PF +E  L+T TLK KR +L  Y++ +ID LYE +
Sbjct: 645 PEPFSIENGLLTPTLKAKRGELSKYFRTQIDSLYEHI 681

Acyl-CoA synthetases (ACSL) activate long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL5 may activate fatty acids from exogenous sources for the synthesis of triacylglycerol destined for intracellular storage (By similarity). Utilizes a wide range of saturated fatty acids with a preference for C16-C18 unsaturated fatty acids (By similarity). It was suggested that it may also stimulate fatty acid oxidation (By similarity). At the villus tip of the crypt-villus axis of the small intestine may sensitize epithelial cells to apoptosis specifically triggered by the death ligand TRAIL. May have a role in the survival of glioma cells.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	673
255548375	660	long-chain-fatty-acid CoA ligase, putati	0.979	0.998	0.778	0.0
224068616	665	predicted protein [Populus trichocarpa]	0.979	0.990	0.765	0.0
225437622	662	PREDICTED: long chain acyl-CoA synthetas	0.980	0.996	0.754	0.0
356505647	662	PREDICTED: long chain acyl-CoA synthetas	0.974	0.990	0.753	0.0
356572815	662	PREDICTED: long chain acyl-CoA synthetas	0.973	0.989	0.75	0.0
357511417	668	Annotation was added to scaffolds in Nov	0.971	0.979	0.726	0.0
356534712	660	PREDICTED: long chain acyl-CoA synthetas	0.974	0.993	0.739	0.0
356499773	660	PREDICTED: long chain acyl-CoA synthetas	0.973	0.992	0.744	0.0
449518374	660	PREDICTED: long chain acyl-CoA synthetas	0.973	0.992	0.726	0.0
357442179	686	Annotation was added to scaffolds in Nov	0.971	0.953	0.693	0.0

>gi|255548375|ref|XP_002515244.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis] gi|223545724|gb|EEF47228.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis]

 Score = 1092 bits (2825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/672 (77%), Positives = 584/672 (86%), Gaps = 13/672 (1%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK+FA +VEEG+EGKDG PSVGPVYRN+L+ N FP+ D D++TAWD+FS+SV+KYP N+M
Sbjct: 1   MKVFAVEVEEGREGKDGNPSVGPVYRNVLSKNEFPAPDCDMDTAWDLFSVSVKKYPENKM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FV+GK GPYVWKTYKEVYEEVLQI SALRASGAEPGCRVGIYG+NCPQW+ AMEA
Sbjct: 61  LGWRKFVNGKVGPYVWKTYKEVYEEVLQIGSALRASGAEPGCRVGIYGSNCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A SL+CVPLYDTLGP AVNFI+DHAEIDF FVQDKKVKELL+PDC SA RL+ +VCFT
Sbjct: 121 CSAHSLVCVPLYDTLGPNAVNFIVDHAEIDFAFVQDKKVKELLNPDCGSASRLKTVVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A Q  IKPYSW+EFL LGK N  E  PP PF+ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKDKAEQIQIKPYSWEEFLRLGKENPSETSPPHPFSICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE + +F+  VDLF++QFEDKMTVDDVYLSFLPLAHILDR+IEEYFFR+GA+VGYYHGD
Sbjct: 241 THEAVMSFLRSVDLFMEQFEDKMTVDDVYLSFLPLAHILDRMIEEYFFRKGAAVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNAL+DDLMELKPT LAGVPRVFEKIHEGIKKALEEL P+RRRIFDALYKYKL WMN+GY
Sbjct: 301 LNALKDDLMELKPTFLAGVPRVFEKIHEGIKKALEELNPVRRRIFDALYKYKLYWMNLGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           KQ+ ASPLADLLAFRKVKA+LGGRLRL+ISG APLSTEVEEFLRVTCCAF+VQGYGLTET
Sbjct: 361 KQKYASPLADLLAFRKVKAKLGGRLRLIISGAAPLSTEVEEFLRVTCCAFVVQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CGP T+ FPDEMCM+G  G V V +ELRLEEVPEMGY+PL +PP GE+CVRGKTLFSGYY
Sbjct: 421 CGPVTIGFPDEMCMMGAVGAVCVCNELRLEEVPEMGYNPLGNPPRGEICVRGKTLFSGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LTRE + DGWFHTGDIG+I PNGVVKIIDRKK+LIK+SQGEY+ALEYLENVY + P
Sbjct: 481 KNPELTRECMKDGWFHTGDIGEIHPNGVVKIIDRKKHLIKLSQGEYIALEYLENVYSITP 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           I+EDIWVYGDS K ML+AVV   EE+TKKWAY NG   SF  LCSL QL  Y+LSELK+ 
Sbjct: 541 IVEDIWVYGDSSKPMLIAVVALNEENTKKWAYLNGFLDSFSALCSLDQLHEYVLSELKST 600

Query: 601 AERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 660
           AERNK             LRGFE IKG IL+ RPFDMERDLVTATLKKKRNKLL YYQ+E
Sbjct: 601 AERNK-------------LRGFERIKGAILESRPFDMERDLVTATLKKKRNKLLSYYQLE 647

Query: 661 IDQLYEKLAPGR 672
           IDQLY+ L   R
Sbjct: 648 IDQLYKTLGGKR 659

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068616|ref|XP_002302784.1| predicted protein [Populus trichocarpa] gi|222844510|gb|EEE82057.1| predicted protein [Populus trichocarpa]

 Score = 1085 bits (2806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/675 (76%), Positives = 586/675 (86%), Gaps = 16/675 (2%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           +K FAAQVEEG+EGKDGKPSVGPVYRNLL+   +P +D D+ T+WDIFS S +KYP  +M
Sbjct: 3   LKAFAAQVEEGREGKDGKPSVGPVYRNLLSKKEYPPLDRDVTTSWDIFSSSAKKYPEYKM 62

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVDGK GPYVWKTYKEVY+EVLQI SALRASGAEPG RVGIYG+NCPQW+EAMEA
Sbjct: 63  LGWRKFVDGKVGPYVWKTYKEVYDEVLQISSALRASGAEPGYRVGIYGSNCPQWIEAMEA 122

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           CNA SL+CVPLYDT+GP AVNFI+DHAEIDFVFVQDKKVKELL PDC SAQRL+ +VCFT
Sbjct: 123 CNAQSLVCVPLYDTIGPRAVNFIIDHAEIDFVFVQDKKVKELLDPDCASAQRLKAIVCFT 182

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A Q GIK YSW+E+L +GK N  EI PPQP +ICTIMYTSGTSGDPKGVV+
Sbjct: 183 SLTEEEKDRAAQMGIKSYSWEEYLCMGKENPSEIFPPQPLSICTIMYTSGTSGDPKGVVI 242

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
            HET+A FV G+DLF++QFEDKMT DDVYLSFLPLAH+LDR+IEEYFFR+GASVGYYHGD
Sbjct: 243 LHETVAAFVRGIDLFMEQFEDKMTTDDVYLSFLPLAHVLDRMIEEYFFRKGASVGYYHGD 302

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIK---KALEELRPLRRRIFDALYKYKLAWMN 357
           LNALRDDLMELKPT LAGVPRVFEKI EG++   KAL+EL PLRR IFD LY+YKL WMN
Sbjct: 303 LNALRDDLMELKPTCLAGVPRVFEKIQEGMEIPIKALQELSPLRRNIFDVLYRYKLGWMN 362

Query: 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGL 417
            GY+Q+ ASPLADLLAFRKVKA+LGGRLRL+I GGA LSTEVEEFLRVT CAF++QGYGL
Sbjct: 363 RGYRQKYASPLADLLAFRKVKAKLGGRLRLIICGGASLSTEVEEFLRVTSCAFVIQGYGL 422

Query: 418 TETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 477
           TE+CGP T+ FPDEMCM+GT G V+VY++L LEEVPEMGY PL +PPCGE+C+RGKTLFS
Sbjct: 423 TESCGPATMAFPDEMCMLGTVGAVAVYNDLCLEEVPEMGYDPLGNPPCGEICLRGKTLFS 482

Query: 478 GYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC 537
           GYYKNP+LTRES+ DGWFHTGDIG+ILPNGVVKIIDRKKNLIK+SQGEY+A+EYLENVY 
Sbjct: 483 GYYKNPELTRESMKDGWFHTGDIGEILPNGVVKIIDRKKNLIKLSQGEYIAIEYLENVYN 542

Query: 538 VAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL 597
             PI+EDIW+YGDS KSMLVAVVV  EE+TK WAY NGH GSF ELCSL QLQ  +LSEL
Sbjct: 543 NTPIVEDIWIYGDSCKSMLVAVVVLHEENTKSWAYLNGHMGSFTELCSLHQLQKLVLSEL 602

Query: 598 KNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY 657
           K  AERNK             L+GFEHIKGVIL+  PFD+E+DLVTATLKKKRNKL+ +Y
Sbjct: 603 KTTAERNK-------------LKGFEHIKGVILESCPFDIEKDLVTATLKKKRNKLVSHY 649

Query: 658 QVEIDQLYEKLAPGR 672
           +VEID+LY+KLA GR
Sbjct: 650 RVEIDELYQKLAEGR 664

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437622|ref|XP_002278345.1| PREDICTED: long chain acyl-CoA synthetase 1 [Vitis vinifera] gi|297744008|emb|CBI36978.3| unnamed protein product [Vitis vinifera]

 Score = 1076 bits (2782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/673 (75%), Positives = 579/673 (86%), Gaps = 13/673 (1%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FA QVE G+EG+DGKPSVGPVYRN LA +GFP +DS+LNTAWD   +S +KYPGNRM
Sbjct: 1   MKTFAVQVENGREGRDGKPSVGPVYRNFLAKSGFPPMDSNLNTAWDNLRISSEKYPGNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FV GK GPY WKTY+EVYEE+L I SAL+ASGA+PG RVGIYG+NCPQW+ AMEA
Sbjct: 61  LGWREFVGGKLGPYKWKTYREVYEEILHIGSALQASGAQPGSRVGIYGSNCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A SLICVPLYDTLGPGAV++I+DHAE+DFVFVQDKKVKELL+PDCRSA+RL++MVCFT
Sbjct: 121 CSAYSLICVPLYDTLGPGAVDYIIDHAEVDFVFVQDKKVKELLNPDCRSAKRLKLMVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           S T EQK+ A   GIKPYSWDEFLH+GK N  E+ PPQP +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SPTEEQKDKAADIGIKPYSWDEFLHMGKENPSEVFPPQPLDICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE + T V GVD+F++QFEDKMTVDDVYLSFLPLAHILDR+IEEYFF +GASVGYYHGD
Sbjct: 241 THENVTTIVRGVDIFMEQFEDKMTVDDVYLSFLPLAHILDRIIEEYFFHKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           +NALR+DLMELKPTL AGVPRVFE++HEGIKKA++EL P+RRRIF  LYKYKL+WMN GY
Sbjct: 301 MNALREDLMELKPTLFAGVPRVFERVHEGIKKAVQELNPIRRRIFGVLYKYKLSWMNSGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K REASPLADLLAFRKVKARLGGR+RL+ISGGAPLSTEVEEFLRVT CAFL QGYGLTET
Sbjct: 361 KHREASPLADLLAFRKVKARLGGRVRLIISGGAPLSTEVEEFLRVTSCAFLTQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CG T++ FPDEM M+GT G VSVYSELRLEEVPEMGY P  DPP GE+CVRGKT+F+GY+
Sbjct: 421 CGLTSIGFPDEMSMIGTVGAVSVYSELRLEEVPEMGYDPFGDPPRGEICVRGKTIFAGYH 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LT ESI DGWFHTGDIG++LPNGV+KIIDRKKNL+K+SQGEYVA+EYLE VY  A 
Sbjct: 481 KNPELTLESIRDGWFHTGDIGEMLPNGVLKIIDRKKNLVKLSQGEYVAVEYLEKVYGTAD 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           I+EDIWVYG+S KSMLVAVVVP EE+TKKWA  NGH GS  ELCSL  L +Y+LSELK A
Sbjct: 541 IVEDIWVYGNSFKSMLVAVVVPHEENTKKWADLNGHKGSLSELCSLNLLHSYVLSELKAA 600

Query: 601 AERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 660
           AE +K             LRGFEHIKGVIL+ R F+ E+DLVT TLKK+R+K+L +YQ +
Sbjct: 601 AELSK-------------LRGFEHIKGVILEARLFEAEQDLVTPTLKKRRDKMLKHYQAK 647

Query: 661 IDQLYEKLAPGRR 673
           ID+LY  L  GR 
Sbjct: 648 IDELYANLGEGRH 660

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505647|ref|XP_003521601.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score = 1071 bits (2769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/669 (75%), Positives = 578/669 (86%), Gaps = 13/669 (1%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAA+VEEG+EG +G+ S+GPVYRNLL+ N FP +D DL+TAWDIFSM+V+KYP NRM
Sbjct: 1   MKSFAAKVEEGREGINGELSIGPVYRNLLSKNQFPPLDPDLSTAWDIFSMAVKKYPKNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVD K GPYVWKTYKEVY+EVL I SALRASGAE G ++GIYGANCPQW+ AMEA
Sbjct: 61  LGWREFVDAKIGPYVWKTYKEVYDEVLHIGSALRASGAELGSKIGIYGANCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A SL+CVPLYDTLGPGAVNFI+DH E+DFVFVQD+KV  LL+PDC+SAQRL+ MV FT
Sbjct: 121 CCAHSLVCVPLYDTLGPGAVNFIIDHGELDFVFVQDRKVIHLLNPDCKSAQRLKAMVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A+  GIKPYSW EFLH+GK N   I  PQP NICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKDKAISIGIKPYSWQEFLHMGKENPSNISAPQPNNICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE IATFV G+DLF++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF +GASVGYYHGD
Sbjct: 241 THENIATFVRGMDLFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFHKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTL AGVPRVFEK+HEGIKKA+EEL P+RRR+F  LYK+KL WMN GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVHEGIKKAVEELNPVRRRVFGMLYKHKLGWMNKGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K   ASPLADLLAFRKVKARLGGR+RL+ISGGAPLS+EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHCNASPLADLLAFRKVKARLGGRVRLIISGGAPLSSEVEEFLRVTSCAFVCQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CG TT+ +PDEMCM+GT GPVSVY+E+RLEEVPEMGY+PL  P CGE+C+RGKT+F+GYY
Sbjct: 421 CGSTTLAYPDEMCMLGTVGPVSVYNEMRLEEVPEMGYNPLGSPSCGEICLRGKTVFTGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LTRE+I DGWFHTGDI ++ PNGVVKIIDRKKNLIK+SQGEY+ALE+LENVY + P
Sbjct: 481 KNPELTREAIKDGWFHTGDIAEVQPNGVVKIIDRKKNLIKLSQGEYIALEHLENVYGITP 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           I+ED+WVYG+S KS LVAVVVP EE TKKWA+SNGH   F +LCSL QL+ ++LSELK  
Sbjct: 541 IVEDVWVYGNSFKSALVAVVVPNEEITKKWAFSNGHIAPFSKLCSLDQLKKHVLSELKVT 600

Query: 601 AERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 660
           AERNK             L+GFE+IKGVILDP+PFDMERDLVT+T+KK+RN +L YYQVE
Sbjct: 601 AERNK-------------LKGFEYIKGVILDPQPFDMERDLVTSTMKKRRNNMLKYYQVE 647

Query: 661 IDQLYEKLA 669
           ID +Y  L+
Sbjct: 648 IDDVYRSLS 656

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572815|ref|XP_003554561.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score = 1065 bits (2753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/668 (75%), Positives = 576/668 (86%), Gaps = 13/668 (1%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FA +VEEG+EG +G+ S+GPVYRNLL+ N FP +D DL+TAWDIFSM+V+KY  NRM
Sbjct: 1   MKGFAVKVEEGREGTNGELSIGPVYRNLLSKNEFPPLDPDLSTAWDIFSMAVKKYRKNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVDGK GPYVWKTY+EVY+EVL I SALRASGAEPG R+GIYGANCPQW+ AMEA
Sbjct: 61  LGWREFVDGKIGPYVWKTYEEVYDEVLHIGSALRASGAEPGSRIGIYGANCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A +LICVPLYDTLGPGAVNFI+DH E+DFVFVQDKKV  LL+PDC+SAQRL+ MV FT
Sbjct: 121 CCAHNLICVPLYDTLGPGAVNFIIDHGELDFVFVQDKKVIHLLNPDCKSAQRLKAMVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A+  GIKPYSW+EFLH+GK N   I PPQP +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKDKAIAIGIKPYSWEEFLHMGKENPSNISPPQPNSICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE I  FV G+DLF++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF +GASVGYYHGD
Sbjct: 241 THENITVFVRGMDLFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFHKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTL AGVPRVFEK+HEGIKKA+EEL P+RRR+F  LYK+KL WMN GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVHEGIKKAVEELNPVRRRVFGMLYKHKLGWMNKGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K   ASPLADLLAFRKVKARLGGR+RL+ISGGAPLS+EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHCNASPLADLLAFRKVKARLGGRVRLIISGGAPLSSEVEEFLRVTSCAFVCQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CG TT+ +PDEMCM+GT GPVS+Y+E+RLEEVPEMGY+PL  P CGE+C+RGKT+F+GYY
Sbjct: 421 CGSTTLAYPDEMCMLGTVGPVSIYNEMRLEEVPEMGYNPLGSPSCGEICLRGKTVFTGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LTRE+I DGWFHTGDI ++  NG VKIIDRKKNLIK+SQGEY+ALE+LENVY + P
Sbjct: 481 KNPELTREAIKDGWFHTGDIAEVQLNGAVKIIDRKKNLIKLSQGEYIALEHLENVYGITP 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           I+ED+WVYG+S KS LVAVVVP EE TKKWA+SNGH   F +LCSL QL+ ++LSELK  
Sbjct: 541 IVEDVWVYGNSFKSALVAVVVPNEETTKKWAFSNGHMAPFSKLCSLDQLKKHVLSELKMT 600

Query: 601 AERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 660
           AERNK             L+GFE+IKGVILDP+PFDMERDLVT+T+KK+RN +L YYQVE
Sbjct: 601 AERNK-------------LKGFEYIKGVILDPQPFDMERDLVTSTMKKRRNNMLKYYQVE 647

Query: 661 IDQLYEKL 668
           ID+LY  L
Sbjct: 648 IDELYRSL 655

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511417|ref|XP_003625997.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] gi|355501012|gb|AES82215.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula]

 Score = 1040 bits (2690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/673 (72%), Positives = 571/673 (84%), Gaps = 19/673 (2%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAA+VEEG+EGK+GK SVGPVYRNLLA + FP  D DL TAWDIFS++ +KYP NRM
Sbjct: 1   MKSFAAKVEEGREGKNGKLSVGPVYRNLLAKDQFPPSDPDLTTAWDIFSVAAKKYPQNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVDGKFG YVWKTYK+VY+EV+ I SALRASGA+ G R+G+YG+NCPQW+ AMEA
Sbjct: 61  LGWREFVDGKFGSYVWKTYKQVYDEVMHIGSALRASGAQHGSRIGVYGSNCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A SL+CVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKV +LLSPDC+SA RL+ +VCFT
Sbjct: 121 CCAHSLVCVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVMQLLSPDCKSASRLKAIVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
            LT E+K+ A   G+KPYSW+EFL +GK     I PPQ  +ICTIMYTSGTSGDP+GVVL
Sbjct: 181 KLTNEEKDKATSIGVKPYSWEEFLQMGKETPSTISPPQAHDICTIMYTSGTSGDPQGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG- 299
           THE I  FV G+D+F++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF +GASVGYYHG 
Sbjct: 241 THENITYFVRGMDIFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFHKGASVGYYHGV 300

Query: 300 -----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354
                DL ALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR +F  LYK KL 
Sbjct: 301 YSIIHDLTALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLYKRKLG 360

Query: 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQG 414
           WM  GYK   ASP ADLLAFRKVKARLGGR+RL+I+GGAPLS+E+EEFLRVT  AF+ QG
Sbjct: 361 WMKKGYKHCNASPFADLLAFRKVKARLGGRVRLIITGGAPLSSEIEEFLRVTSGAFVCQG 420

Query: 415 YGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT 474
           YGLTETCG TT+ FPDEMCM+GT GPVS+Y+E++LEEVPEMGY+PL +P CGE+C+RGK+
Sbjct: 421 YGLTETCGSTTLAFPDEMCMLGTVGPVSIYNEIQLEEVPEMGYNPLGNPSCGEICLRGKS 480

Query: 475 LFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
           +FSGY+KNP+LT+ESI+DGWFHTGDIG++ PNGVVKIIDRKKNLIK+SQGEY+ALEYLEN
Sbjct: 481 VFSGYHKNPELTKESIVDGWFHTGDIGEMQPNGVVKIIDRKKNLIKLSQGEYIALEYLEN 540

Query: 535 VYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYIL 594
           VY + PI+ED+WVYG+S KS+LVAVVVP EE TKKWAY+NG  GSF ELCSL + + Y+L
Sbjct: 541 VYGITPIVEDVWVYGNSFKSVLVAVVVPNEEITKKWAYTNGFVGSFSELCSLDEFKKYVL 600

Query: 595 SELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL 654
           SELK  AERNK             L+GFE IKGVILDP PFDMERDLVTATLKK+RN +L
Sbjct: 601 SELKLTAERNK-------------LKGFEQIKGVILDPHPFDMERDLVTATLKKRRNNML 647

Query: 655 IYYQVEIDQLYEK 667
            YYQVEID++Y++
Sbjct: 648 KYYQVEIDEVYQR 660

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534712|ref|XP_003535896.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score = 1035 bits (2677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/669 (73%), Positives = 570/669 (85%), Gaps = 13/669 (1%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK F+ +VEEG+EGK+G  SVGPVYRNLL+ N FP +D D +T WDIF +SV+ +P NRM
Sbjct: 1   MKAFSVKVEEGREGKNGNLSVGPVYRNLLSENEFPPMDPDFSTTWDIFCVSVKNHPNNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LG R  VDGK GPYVWKTYKEVY+EVL + SALRASG+EPG ++GIYG+NCP+W+ AME 
Sbjct: 61  LGKRKIVDGKIGPYVWKTYKEVYDEVLHMSSALRASGSEPGTKIGIYGSNCPEWIVAMEV 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A S ICVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKVKELL+P+C+S++RL+ MVCFT
Sbjct: 121 CSAQSFICVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVKELLNPECKSSKRLKAMVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           +LT E+K  A   GIKPYSW EFLHLGK N     PPQ  +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 TLTEEEKAKATAIGIKPYSWHEFLHLGKENPKSTFPPQAHDICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           T+E +   V G+DLF++QFEDKMTVDDVYLSFLPLAHILDR IEEYFFR+GASVGYYHGD
Sbjct: 241 TYENVTALVRGMDLFMEQFEDKMTVDDVYLSFLPLAHILDRTIEEYFFRKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR +F  LY YKL WM  GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLYNYKLGWMKKGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K REAS LADLLAFRKVKARLGGR+RL+ISGGA LS EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHREASRLADLLAFRKVKARLGGRVRLIISGGAALSPEVEEFLRVTTCAFVCQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CGPTT+ FPDEMCM+GT G VS+Y+E++LEEVPEMGY+PL+ PPCGE+CVRGKT+F+ YY
Sbjct: 421 CGPTTLGFPDEMCMLGTVGAVSIYNEIKLEEVPEMGYNPLETPPCGEICVRGKTVFTAYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LT+E+I DGWFHTGDIG++LPNGV+KIIDRKKNL+K+SQGEY+ALE+LENVY + P
Sbjct: 481 KNPELTKEAIKDGWFHTGDIGEMLPNGVIKIIDRKKNLVKLSQGEYIALEHLENVYGITP 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           I+EDIWVYG+S KSMLVAVVVP EE   KWAYSNGH  SF +LCSL QL+ Y+LSELK  
Sbjct: 541 IVEDIWVYGNSFKSMLVAVVVPNEEFANKWAYSNGHIASFPKLCSLDQLKKYVLSELKLT 600

Query: 601 AERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 660
           AERNK             LRGFEHIKGVIL+P  FDMERDLVTATLKKKRNKLL YYQVE
Sbjct: 601 AERNK-------------LRGFEHIKGVILEPHEFDMERDLVTATLKKKRNKLLKYYQVE 647

Query: 661 IDQLYEKLA 669
           ID++Y+ L 
Sbjct: 648 IDEIYQSLT 656

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499773|ref|XP_003518711.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score = 1034 bits (2674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/668 (74%), Positives = 570/668 (85%), Gaps = 13/668 (1%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK F+ +VEEG+EGK+G  SVGPVYRNLL+ N FP +D D +T WDIF +SV+ +P NRM
Sbjct: 1   MKAFSVKVEEGREGKNGNLSVGPVYRNLLSENEFPPMDPDFSTTWDIFCVSVKNHPNNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LG R  VD K GPYVWKTYKEVY+EVL + SALRASGAEPG ++GIYG+NCP+W+ AMEA
Sbjct: 61  LGKRKIVDEKIGPYVWKTYKEVYDEVLHMSSALRASGAEPGTKIGIYGSNCPEWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A S +CVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKVKELL+P+C+S++RL+ MVCFT
Sbjct: 121 CSAQSFVCVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVKELLNPECKSSKRLKAMVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K  A   GIKPYSW +FLHLGK N     PPQ  +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKAKATAIGIKPYSWHDFLHLGKENPKSTFPPQAHDICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           T+E +   V G+DLF++QFEDKMTVDDVYLSFLPLAHILDR IEEYFFR+GASVGYYHGD
Sbjct: 241 TNENVTALVRGMDLFMEQFEDKMTVDDVYLSFLPLAHILDRTIEEYFFRKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR +F  LY YKL WM  GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLYNYKLGWMKKGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K R+AS LADLLAFRKVKARLGGR+RL+ISGGA LS EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHRQASRLADLLAFRKVKARLGGRVRLIISGGAALSPEVEEFLRVTTCAFVCQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CGPTT+ FPDEMCM+GT G VS+Y+E+ LEEVPEMGY+PL+ PPCGE+CVRGKT+F+GYY
Sbjct: 421 CGPTTLGFPDEMCMLGTVGAVSIYNEIMLEEVPEMGYNPLETPPCGEICVRGKTVFTGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LT+E+I DGWFHTGDIG++LPNGV+KIIDRKKNL+K+SQGEY+ALE+LENVY V P
Sbjct: 481 KNPELTKEAIKDGWFHTGDIGEMLPNGVIKIIDRKKNLVKLSQGEYIALEHLENVYGVTP 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           I+EDIWVYG+S KSMLVAVVVP EE   KWAYSNGH  SF  LCSL QL+ Y+LSELK  
Sbjct: 541 IVEDIWVYGNSFKSMLVAVVVPNEEVANKWAYSNGHIASFPILCSLDQLKKYVLSELKLT 600

Query: 601 AERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 660
           AERNK             LRGFEHIKGVIL+P+ FDMERDLVTATLKKKRNKLL YYQVE
Sbjct: 601 AERNK-------------LRGFEHIKGVILEPQEFDMERDLVTATLKKKRNKLLKYYQVE 647

Query: 661 IDQLYEKL 668
           ID+LY+ L
Sbjct: 648 IDELYQSL 655

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518374|ref|XP_004166217.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Cucumis sativus]

 Score = 1012 bits (2617), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/669 (72%), Positives = 564/669 (84%), Gaps = 14/669 (2%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK F+ +VEEG+EGKDGKPSVGPVYRN+LA   FPS   DL+T+WD+FS+S  KY   RM
Sbjct: 1   MKRFSVKVEEGREGKDGKPSVGPVYRNVLAEKEFPSPYEDLSTSWDLFSVSANKYAERRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVDGK GPY+WKTYKEVY +VL I SALRA GAEPG R+GIYGANCPQW+ AMEA
Sbjct: 61  LGWRKFVDGKPGPYIWKTYKEVYGDVLNIGSALRAIGAEPGSRIGIYGANCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           CNA SLICVPLYDTLG GAVNFI+DHAEID VF+QDKK KELL+  C   +RL+V +CFT
Sbjct: 121 CNAHSLICVPLYDTLGHGAVNFIIDHAEIDIVFIQDKKAKELLNSGCTIPERLKVFICFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHL-GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVV 239
           SL  E+K  A   G+KPYSWDEFL L  K N  EI PP+P +ICTIMYTSGTSG PKGVV
Sbjct: 181 SLKEEEKISATNNGMKPYSWDEFLRLVRKENPSEISPPRPLDICTIMYTSGTSGTPKGVV 240

Query: 240 LTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG 299
           LT ETI TF+ GVD+ ++QFEDKMT DDVYLSFLPLAHILDR +EEYFFR+GASVGYYHG
Sbjct: 241 LTQETITTFIRGVDIQMEQFEDKMTEDDVYLSFLPLAHILDRTVEEYFFRKGASVGYYHG 300

Query: 300 DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG 359
           DL+A++DDLMELKPTLL GVPRVFEKIHEGIK+A++ L P+RR+ FD LYKYKL+WMN G
Sbjct: 301 DLDAIKDDLMELKPTLLVGVPRVFEKIHEGIKQAVQVLNPVRRKAFDLLYKYKLSWMNSG 360

Query: 360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTE 419
           YKQ++ASPLADLLAFRKVKARLGGRLRL+ISGGA LSTEVEEFLRVTCCAF VQGYGLTE
Sbjct: 361 YKQKDASPLADLLAFRKVKARLGGRLRLIISGGAALSTEVEEFLRVTCCAFFVQGYGLTE 420

Query: 420 TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGY 479
           TCGPTT+ FPDEMCM+G  G V++++EL LEEVP+MGY+PL D PCGE+CVRGKT+F+ Y
Sbjct: 421 TCGPTTIGFPDEMCMLGNVGGVTLFNELCLEEVPDMGYNPLGDRPCGEICVRGKTVFTEY 480

Query: 480 YKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVA 539
           YK+P+LT+ESI DGWFHTGDIG++ PNGVVKIIDRKKNLIK+SQGEY+ALEYLENVY + 
Sbjct: 481 YKDPELTKESIKDGWFHTGDIGEMFPNGVVKIIDRKKNLIKLSQGEYIALEYLENVYSIT 540

Query: 540 PIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKN 599
           PI+EDIW+YG+S KSMLVAVVV  EE+TKKWA SNG   SF ELC L QL++Y+LSEL +
Sbjct: 541 PIVEDIWIYGNSFKSMLVAVVVLHEENTKKWANSNGFLCSFSELCPLEQLRHYVLSELTS 600

Query: 600 AAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV 659
            AERNK             L+ FE+IKGV+L+ RPFD+E+DLVTATLKKKRN LL +Y+V
Sbjct: 601 TAERNK-------------LKRFEYIKGVVLELRPFDIEKDLVTATLKKKRNNLLKHYEV 647

Query: 660 EIDQLYEKL 668
           +I+  Y+ L
Sbjct: 648 QINAEYKNL 656

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357442179|ref|XP_003591367.1| Annotation was added to scaffolds in November 2011~Long chain fatty acid-CoA ligase [Medicago truncatula] gi|355480415|gb|AES61618.1| Annotation was added to scaffolds in November 2011~Long chain fatty acid-CoA ligase [Medicago truncatula]

 Score =  982 bits (2539), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/673 (69%), Positives = 554/673 (82%), Gaps = 19/673 (2%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK F+ +VEEGKEGK+G  SVGPVYRNLL+ N FP +D D  +AWDIFS SV+K+P NRM
Sbjct: 23  MKSFSVKVEEGKEGKNGMLSVGPVYRNLLSQNEFPPMDPDFTSAWDIFSTSVKKHPQNRM 82

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR  VDGK GPYVWKTYKE Y+EVLQI SAL+A GA+ G ++GIYG+NCPQW+ AMEA
Sbjct: 83  LGWRKIVDGKIGPYVWKTYKEAYDEVLQIASALKACGAKSGSKIGIYGSNCPQWIIAMEA 142

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A + ICVPLYDTLG GA+NFI+DHAEID+VFVQDKKVKELL+ DC+S++RL+ +V FT
Sbjct: 143 CSAQNFICVPLYDTLGSGAINFIIDHAEIDYVFVQDKKVKELLNADCKSSKRLKAIVGFT 202

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A   GIKPY+W++F+  GK N   I PP   +ICTIMYTSGTSGDPKGVVL
Sbjct: 203 SLTEEEKDEATNAGIKPYTWNQFVQKGKENPSSINPPLAHDICTIMYTSGTSGDPKGVVL 262

Query: 241 THETIATFVSGVDLFLDQFEDK-MTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG 299
           THE +   V G+DLF++QFEDK MTVDDVYLSFLPLAHILDR IEEYFFR GASVGYYHG
Sbjct: 263 THENVLALVRGMDLFMEQFEDKVMTVDDVYLSFLPLAHILDRCIEEYFFRNGASVGYYHG 322

Query: 300 DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK--YKLAWMN 357
           DLNAL +DL ELKPTL AGVPRVFEK++EG+    E     +    ++ +     L WMN
Sbjct: 323 DLNALLEDLSELKPTLFAGVPRVFEKVYEGMVTYQESSGTTKSSEENSFWHALQLLGWMN 382

Query: 358 MGYKQREASPLADLLAFRK-VKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYG 416
            GY QREAS LADLLAFRK VKARLGGR+RL+ISGGA LS+E+EEFLRVT CAF+ QGYG
Sbjct: 383 KGYTQREASRLADLLAFRKVVKARLGGRVRLIISGGAALSSEIEEFLRVTTCAFVCQGYG 442

Query: 417 LTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLF 476
           LTETCGPTT+ FPDEMCM+G  G V+V++ELRLEEVP+MGY+PL  PPCGE+CVRGK++F
Sbjct: 443 LTETCGPTTLTFPDEMCMLGNVGVVTVFNELRLEEVPDMGYNPLGTPPCGEICVRGKSVF 502

Query: 477 SGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
           +GY+KNP+LT+E+IIDGWFHTGDIG++LPNG+++IIDRKKNL+K+SQGEY+ALEYLENVY
Sbjct: 503 TGYHKNPELTKEAIIDGWFHTGDIGEMLPNGIIRIIDRKKNLVKLSQGEYIALEYLENVY 562

Query: 537 CVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE 596
            + PI+EDIWVYG+S KSMLVAVVVP E+ T KWAY+NGH  SF +LCSL QL+ Y+LSE
Sbjct: 563 TITPIVEDIWVYGNSFKSMLVAVVVPNEDVTNKWAYANGHISSFSKLCSLDQLKKYVLSE 622

Query: 597 LKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY 656
           LK+ A RNK               GFEHIKGVILDP PFDMERDLVTATLKKKRN +L Y
Sbjct: 623 LKSTAVRNK---------------GFEHIKGVILDPLPFDMERDLVTATLKKKRNNMLKY 667

Query: 657 YQVEIDQLYEKLA 669
           Y+V+ID+LY+ L 
Sbjct: 668 YKVDIDELYKSLT 680

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	673
TAIR|locus:2065195	660	LACS1 "AT2G47240" [Arabidopsis	0.974	0.993	0.680	6.6e-255
TAIR|locus:2138141	666	LACS4 "long-chain acyl-CoA syn	0.971	0.981	0.499	3.3e-182
TAIR|locus:2136148	666	AT4G11030 [Arabidopsis thalian	0.977	0.987	0.493	7.3e-178
TAIR|locus:2014265	665	LACS3 "long-chain acyl-CoA syn	0.967	0.978	0.496	2.8e-176
TAIR|locus:2010177	665	LACS2 "long-chain acyl-CoA syn	0.961	0.972	0.462	1.1e-158
TAIR|locus:2083013	701	LACS6 "AT3G05970" [Arabidopsis	0.898	0.863	0.406	5.3e-111
DICTYBASE|DDB_G0269474	673	fcsB "fatty acyl-CoA synthetas	0.947	0.947	0.353	5.8e-105
DICTYBASE|DDB_G0269242	667	fcsA "long-chain-fatty-acid-Co	0.895	0.904	0.372	1.6e-102
FB|FBgn0036821	704	CG3961 [Drosophila melanogaste	0.906	0.866	0.359	8.8e-102
UNIPROTKB|E2R463	698	ACSL5 "Uncharacterized protein	0.895	0.863	0.359	6.2e-101

TAIR|locus:2065195 LACS1 "AT2G47240" [Arabidopsis thaliana (taxid:3702)]

 Score = 2454 (868.9 bits), Expect = 6.6e-255, P = 6.6e-255
 Identities = 455/669 (68%), Positives = 549/669 (82%)

Query:     1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
             MK FAA+VEEG +G DGKPSVGPVYRNLL+  GFP +DS++ TAWDIFS SV+K+P N M
Sbjct:     1 MKSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNM 60

Query:    61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
             LGWR  VD K GPY+WKTYKEVYEEVLQI SALRA+GAEPG RVGIYG NCPQW+ AMEA
Sbjct:    61 LGWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEA 120

Query:   121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
             C A +LICVPLYDTLG GAV++I++HAEIDFVFVQD K+K LL PDC+ A+RL+ +V FT
Sbjct:   121 CAAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFT 180

Query:   181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
             +++ E    A + G+K YSW +FLH+G+    +  PP+ FNICTIMYTSGTSGDPKGVVL
Sbjct:   181 NVSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVL 240

Query:   241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
             TH+ +ATFV G+DL++DQFEDKMT DDVYLSFLPLAHILDR+ EEYFFR+GASVGYYHG+
Sbjct:   241 THQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGN 300

Query:   301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
             LN LRDD+ ELKPT LAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYK+KLAW+N GY
Sbjct:   301 LNVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRGY 360

Query:   361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
                +ASP+AD +AFRK++ +LGGR+RL++SGGAPLS E+EEFLRVTCC F+VQGYGLTET
Sbjct:   361 SHSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTET 420

Query:   421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
              G T + FPDEMCM+GT G  +VY+E+RLEEV EMGY PL + P GE+C+RG+ +FSGYY
Sbjct:   421 LGGTALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGYY 480

Query:   481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
             KNP+LT E + DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALE+LEN++    
Sbjct:   481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEHLENIFGQNS 540

Query:   541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
             +++DIWVYGDS KSMLVAVVVP  E   +WA   G    F ELCS  +L+ +I+SELK+ 
Sbjct:   541 VVQDIWVYGDSFKSMLVAVVVPNPETVNRWAKDLGFTKPFEELCSFPELKEHIISELKST 600

Query:   601 AERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 660
             AE+NK             LR FE+IK V ++ +PFD+ERDLVTATLK +RN LL YYQV+
Sbjct:   601 AEKNK-------------LRKFEYIKAVTVETKPFDVERDLVTATLKNRRNNLLKYYQVQ 647

Query:   661 IDQLYEKLA 669
             ID++Y KLA
Sbjct:   648 IDEMYRKLA 656

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISS;IDA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0010025 "wax biosynthetic process" evidence=IMP

GO:0010143 "cutin biosynthetic process" evidence=IMP

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2138141 LACS4 "long-chain acyl-CoA synthetase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1768 (627.4 bits), Expect = 3.3e-182, P = 3.3e-182
 Identities = 333/667 (49%), Positives = 459/667 (68%)

Query:     2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
             K +  QVEEGKEG DG+PSVGPVYR++ A +GFP     +++ WD+F MSV+KYP N ML
Sbjct:     5 KKYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPML 64

Query:    62 GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
             G R  VDGK G YVW+TY+EVY+ V+++ ++LR+ G +   + GIYGAN P+W+ +MEAC
Sbjct:    65 GRREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124

Query:   122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
             NA  L CVPLYDTLG  AV FI+ H+E+  VFV++KK+ EL      S + ++ +V F  
Sbjct:   125 NAHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGG 184

Query:   182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
             ++ EQKE A   G+  Y+WDEFL LG+  + ++   +  +ICTIMYTSGT+GDPKGV+++
Sbjct:   185 VSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244

Query:   242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
             +E+I T ++GV   L    + +TV DVYLS+LPLAHI DRVIEE F + GA++G++ GD+
Sbjct:   245 NESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDV 304

Query:   302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
               L +DL ELKPT+   VPRV ++++ G++K L +   L++ IFD+ + YK  +M  G  
Sbjct:   305 KLLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQS 364

Query:   362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
               EASPL D L F KVK  LGG +R+++SG APL++ VE FLRV  C  ++QGYGLTE+C
Sbjct:   365 HVEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424

Query:   422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
               T V  PDE+ M+GT GP     ++RLE VPEM Y  L     GE+C+RGKTLFSGYYK
Sbjct:   425 AGTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYK 484

Query:   482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
               DLT+E +IDGW HTGD+G+  P+G +KIIDRKKN+ K+SQGEYVA+E +EN+Y     
Sbjct:   485 REDLTKEVLIDGWLHTGDVGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQA 544

Query:   542 IEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 601
             ++ +WVYG+S +S L+A+  P +   ++WA  NG +G +  LC   + + +IL EL   A
Sbjct:   545 VDSVWVYGNSFESFLIAIANPNQHILERWAAENGVSGDYDALCQNEKAKEFILGELVKMA 604

Query:   602 ERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI 661
             +  K             ++GFE IK + LDP PFDMERDL+T T KKKR +LL YYQ  I
Sbjct:   605 KEKK-------------MKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVI 651

Query:   662 DQLYEKL 668
             D++Y+ +
Sbjct:   652 DEMYKTI 658

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

TAIR|locus:2136148 AT4G11030 [Arabidopsis thaliana (taxid:3702)]

 Score = 1727 (613.0 bits), Expect = 7.3e-178, P = 7.3e-178
 Identities = 333/675 (49%), Positives = 447/675 (66%)

Query:     2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
             K F  +VE  KE  DG PSVGPVYR+  A NGFP+    + + WDIF  +V+KYP NRML
Sbjct:     5 KRFIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNRML 64

Query:    62 GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
             G R   +GK G YVWKTYKEVY+ V+++ ++LR+ G + G + GIYG NC +W+ +MEAC
Sbjct:    65 GRREISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISMEAC 124

Query:   122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
             NA  L CVPLYDTLG GAV FI+ HAE+   FV++KK+ EL      S + ++ +V F  
Sbjct:   125 NAHGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSFGG 184

Query:   182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
             +  EQKE A + G+  +SWDEFL LG+  + E+   +P +ICTIMYTSGT+GDPKGV+++
Sbjct:   185 VKPEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVMIS 244

Query:   242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
             +E+I T  +GV  FL      ++  DVY+S+LPLAH+ DR IEE   + G S+G++ GD+
Sbjct:   245 NESIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRGDV 304

Query:   302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
               L +DL ELKP++   VPRV ++++ G+++ L      ++++FD  + YK   M  G  
Sbjct:   305 KLLIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKGQS 364

Query:   362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
                ASP  D L F KVK  LGG +R+++SG APL++ +E FLRV  C  ++QGYGLTE+C
Sbjct:   365 HVAASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTESC 424

Query:   422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
               T   FPDE+ M+GT GP     ++RLE VPEM Y  L   P GE+C+RGKTLFSGYYK
Sbjct:   425 AGTFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGYYK 484

Query:   482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
               DLT+E  IDGW HTGD+G+  PNG +KIIDRKKN+ K++QGEYVA+E LENVY    +
Sbjct:   485 REDLTKEVFIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLAQGEYVAVENLENVYSQVEV 544

Query:   542 IEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 601
             IE IWVYG+S +S LVA+  P ++  ++WA  NG  G F  +C   + + +IL EL   A
Sbjct:   545 IESIWVYGNSFESFLVAIANPAQQTLERWAVENGVNGDFNSICQNAKAKAFILGELVKTA 604

Query:   602 ERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI 661
             + NK             L+GFE IK V L+P  FDMERDL+T T KKKR +LL YYQ  I
Sbjct:   605 KENK-------------LKGFEIIKDVHLEPVAFDMERDLLTPTYKKKRPQLLKYYQNVI 651

Query:   662 DQLY----EKLAPGR 672
              ++Y    E LA G+
Sbjct:   652 HEMYKTTKESLASGQ 666

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

TAIR|locus:2014265 LACS3 "long-chain acyl-CoA synthetase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1712 (607.7 bits), Expect = 2.8e-176, P = 2.8e-176
 Identities = 330/665 (49%), Positives = 449/665 (67%)

Query:     4 FAAQVEEGKEGKDG-KPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLG 62
             +  +VE+GK+G DG  PSVGPVYR++ A +GFP    DL +AWDIF +SV+K P N MLG
Sbjct:     6 YIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPNNPMLG 65

Query:    63 WRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122
              R  VDGK G YVW+TYKEV+  V+++ +++R  G   G + GIYGAN P+W+ +MEACN
Sbjct:    66 RREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIISMEACN 125

Query:   123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182
             A  L CVPLYDTLG GA+ FI+ HAE+   F ++ K+ ELL    +S + L+ +V F  +
Sbjct:   126 AHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIVSFGEV 185

Query:   183 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
             T  Q+  A +  +  YSWD+FL LG+    E+   +  ++CTIMYTSGT+GDPKGV+LT+
Sbjct:   186 TNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKGVLLTN 245

Query:   243 ETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLN 302
             E+I   + GV   L   ++++T  DVYLS+LPLAHI DRVIEE      AS+G++ GD+ 
Sbjct:   246 ESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFWRGDVK 305

Query:   303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ 362
              L +D+  LKPT+   VPRV E+I+ G+++ L +   +++++F+  +KYK   M  G   
Sbjct:   306 ILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNMEKGQPH 365

Query:   363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG 422
              +ASP+AD + F+KVK  LGG +RL++SG APL+  +E FLRV  CA ++QGYGLTE+CG
Sbjct:   366 EQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGLTESCG 425

Query:   423 PTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 482
              T V  P+E+ M+GT GP     ++RLE VPEMGY  L   P GE+C+RGKTLFSGYYK 
Sbjct:   426 GTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFSGYYKR 485

Query:   483 PDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
              DLT+E  IDGW HTGD+G+  P+G +KIIDRKKN+ K+SQGEYVA+E LEN+Y     I
Sbjct:   486 EDLTQEVFIDGWLHTGDVGEWQPDGAMKIIDRKKNIFKLSQGEYVAVENLENIYSHVAAI 545

Query:   543 EDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAE 602
             E IWVYG+S +S LVAVV P +   + WA  +  +G F  +C   + + ++L E    A+
Sbjct:   546 ESIWVYGNSYESYLVAVVCPSKIQIEHWAKEHKVSGDFESICRNQKTKEFVLGEFNRVAK 605

Query:   603 RNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID 662
               K             L+GFE IKGV LD  PFDMERDL+T + K KR +LL YYQ EID
Sbjct:   606 DKK-------------LKGFELIKGVHLDTVPFDMERDLITPSYKMKRPQLLKYYQKEID 652

Query:   663 QLYEK 667
             ++Y+K
Sbjct:   653 EMYKK 657

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2010177 LACS2 "long-chain acyl-CoA synthetase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1546 (549.3 bits), Expect = 1.1e-158, P = 1.1e-158
 Identities = 306/662 (46%), Positives = 420/662 (63%)

Query:     8 VEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV 67
             VEEG+      PS GPVYR   A +G   + +D+++ W  FS +V+KYP  +MLG R   
Sbjct:    11 VEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQRVTT 70

Query:    68 DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127
             D K GPY W TYKE ++  ++I SA+R+ G +PG   GIYGANCP+W+ AMEAC +  + 
Sbjct:    71 DSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGIT 130

Query:   128 CVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK 187
              VPLYD+LG  AV FI++HAE+  VFVQ+K V  +LS     +  L+ +V F  +++ QK
Sbjct:   131 YVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQK 190

Query:   188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT 247
             E A    +  +SW+EF  +G ++E  +   +  +ICTIMYTSGT+G+PKGV+L +  I+ 
Sbjct:   191 EEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISV 250

Query:   248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDD 307
              V  +D  L+  +      DV+ S+LPLAH  D+V+E YF  RG+SVGY+ GD+  L DD
Sbjct:   251 QVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDD 310

Query:   308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 367
             +  LKPT+  GVPRV++K++ GI + +     +R+++FD  Y YKL  M  G+ Q EASP
Sbjct:   311 VQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEEASP 370

Query:   368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427
               D L F K+K  LGGR  +++SG APL   VEEFLR+   + L QGYGLTE+CG +   
Sbjct:   371 RLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGGSFTT 430

Query:   428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLD-DPPCGEVCVRGKTLFSGYYKNPDLT 486
                   MVGT G      E RL  VPEMGY     D P GE+C+RG ++FSGY+K  DLT
Sbjct:   431 LAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKRQDLT 490

Query:   487 RESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIW 546
              + +IDGWFHTGDIG+   +G +KIIDRKKN+ K+SQGEYVA+E LEN Y   P+I  IW
Sbjct:   491 DQVLIDGWFHTGDIGEWQEDGSMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIAQIW 550

Query:   547 VYGDSLKSMLVAVVVPCEEDTKKWAYSNGHA-GSFLELCSLVQLQNYILSELKNAAERNK 605
             VYG+S +S LV VVVP  +  + WA  N  +   F  LC  ++ Q Y L EL + A++ +
Sbjct:   551 VYGNSFESFLVGVVVPDRKAIEDWAKLNYQSPNDFESLCQNLKAQKYFLDELNSTAKQYQ 610

Query:   606 VIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY 665
                          L+GFE +K + L+P PFD+ERDL+T T K KR +LL +Y+  +DQLY
Sbjct:   611 -------------LKGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLQHYKGIVDQLY 657

Query:   666 EK 667
              +
Sbjct:   658 SE 659

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0010143 "cutin biosynthetic process" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0010311 "lateral root formation" evidence=IMP

GO:0010025 "wax biosynthetic process" evidence=IGI

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

TAIR|locus:2083013 LACS6 "AT3G05970" [Arabidopsis thaliana (taxid:3702)]

 Score = 1096 (390.9 bits), Expect = 5.3e-111, P = 5.3e-111
 Identities = 262/644 (40%), Positives = 361/644 (56%)

Query:    34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
             FP    D+ T  D F  +V  +   + LG R  VDG  G Y W TY E       + S L
Sbjct:    77 FPD-HPDIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGL 135

Query:    94 RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
                G   G  VGIY  N P+W+    AC++ S + VPLYDTLGP AV FI++HA +  +F
Sbjct:   136 VHHGIPMGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIF 195

Query:   154 VQDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEM 212
                + +  LLS  C S    +R++V    L      +   +G+K  S+   L+ G+ N  
Sbjct:   196 CVAETLNSLLS--CLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQ 253

Query:   213 EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF 272
                PP+P ++ TI YTSGT+G PKGVVLTH  +   V+G       F  K    DVY+S+
Sbjct:   254 RFFPPKPDDVATICYTSGTTGTPKGVVLTHANLIANVAG-----SSFSVKFFSSDVYISY 308

Query:   273 LPLAHILDR---VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
             LPLAHI +R   ++  YF   G +VG+Y GD   L DDL  L+PT+ + VPR++ +I+ G
Sbjct:   309 LPLAHIYERANQILTVYF---GVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAG 365

Query:   330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
             I  A++    L+ R+F+A Y  K   +  G   + ASP+ D L F K+K RLGGR+R + 
Sbjct:   366 IINAVKTSGGLKERLFNAAYNAKKQALLNG---KSASPIWDRLVFNKIKDRLGGRVRFMT 422

Query:   390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTET-CGPTTVCFPDEMCMVGTAGPVSVYSELR 448
             SG +PLS EV EFL+V     + +GYG+TET C  + +   D +   G  G  +   E++
Sbjct:   423 SGASPLSPEVMEFLKVCFGGRVTEGYGMTETSCVISGMDEGDNL--TGHVGSPNPACEVK 480

Query:   449 LEEVPEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPN 506
             L +VPEM Y+  D P P GE+CVRG  +F+GYYK+   T+E I  DGW HTGDIG  LP 
Sbjct:   481 LVDVPEMNYTSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPG 540

Query:   507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEED 566
             G +KIIDRKKN+ K++QGEY+A E +ENVY     +   ++YGDS  S LVAVV    + 
Sbjct:   541 GRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVGQCFIYGDSFNSSLVAVVSVDPDV 600

Query:   567 TKKWAYSNGHAGSFL-ELCSLVQLQNYILSELKNAAERNKVIFANWDT-GCFSLLRGFEH 624
              K WA S G  G  L ELC+  +++  +LS++              DT G  + LRGFE 
Sbjct:   601 LKSWAASEGIKGGDLRELCNNPRVKAAVLSDM--------------DTVGREAQLRGFEF 646

Query:   625 IKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 668
              K V L   PF +E  L+T T K KR +   Y+   I  +Y++L
Sbjct:   647 AKAVTLVLEPFTLENGLLTPTFKIKRPQAKEYFAEAITNMYKEL 690

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA;TAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA;TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005777 "peroxisome" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

DICTYBASE|DDB_G0269474 fcsB "fatty acyl-CoA synthetase" [Dictyostelium discoideum (taxid:44689)]

 Score = 1039 (370.8 bits), Expect = 5.8e-105, P = 5.8e-105
 Identities = 238/673 (35%), Positives = 373/673 (55%)

Query:     4 FAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSV--DSDLNTAWDIFSMSVQKYPGNRML 61
             +   VE G++ ++G    G + RN   ++   S   D ++ T +D    S +KY   +  
Sbjct:    27 YGQTVEIGEKPENG----GRIRRNSACADHLISFLEDDEIYTLYDSLVKSCKKYGERKCF 82

Query:    62 GWRPF-VDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
             G R    +G  G + W +Y    E    I   L   G +P  +VGI+  N  +W+    A
Sbjct:    83 GERKKDSNGNLGKFEWISYNTYLERCEYIQQGLCELGLKPKSKVGIFSKNRLEWLIVHSA 142

Query:   121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
                 S   V  Y+TLG  +++++ +HAEI   F   + +++ L    +  + L+ ++CF 
Sbjct:   143 SFIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSAETLQKTLDI-AKGVKVLKTIICFD 201

Query:   181 SLTAEQKEMAVQTGIKPYSWDEFLHLGK-VN-EMEILPPQPFNICTIMYTSGTSGDPKGV 238
             S+  E   +A + G+  Y++DE +  GK  N + +  PP P  + TIMYTSGT+G PKGV
Sbjct:   202 SIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKHTPPTPDTLSTIMYTSGTTGPPKGV 261

Query:   239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298
             ++TH+ + + V  V  F+  ++      DV+ S+LP AH+L+RV+    F  GA++G + 
Sbjct:   262 MITHKNLTSVVCAVSDFIKVYDT-----DVHYSYLPYAHVLERVVILAAFHFGAAIGIFS 316

Query:   299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
             GD++ +  ++  L PTL  GVPRVFE+I   + K + +   L R +F+  Y  K   +  
Sbjct:   317 GDISNILVEVKLLSPTLFIGVPRVFERIKTNVFKEISKKPALLRTLFNGAYNLKYLSIQH 376

Query:   359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
             G+K      + DL+ F K+K  LGG++R+++SG APLS + E FLRV  C  ++QGYG +
Sbjct:   377 GFKLPIIEKVLDLVFFSKIKQALGGKVRVILSGSAPLSFDTEVFLRVVMCCCVLQGYGAS 436

Query:   419 ETCGPTTVC--FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLF 476
             E CG    C    DE   VGT GP    +E++L +VPE+GY    +   GEVC+RG ++ 
Sbjct:   437 EGCGGDA-CKRLDDES--VGTIGPPFASNEIKLVDVPELGYDSNGEVQTGEVCLRGPSIS 493

Query:   477 SGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
             SGYYK+ + TRE   DGWFHTGDIG+   +G + I+DRKKN+ K+SQGEYVA+E +E + 
Sbjct:   494 SGYYKDEEKTREEFKDGWFHTGDIGRWNRDGSLSIVDRKKNIFKLSQGEYVAVEKIETIV 553

Query:   537 CVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE 596
               +  +E + +YGDS KS ++A++ P  E   +WA S        E+C   + Q++I   
Sbjct:   554 VKSEYVEQVCIYGDSQKSCVIAIIHPHPESCSEWAGSKKTDKDIKEIC---KNQDFI--- 607

Query:   597 LKNAAERNKVIFANWDTGCF-SLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI 655
                     KV+  +    C  S L GFE  K + L P  F  + +L+T + K KR+++  
Sbjct:   608 --------KVVLDDIIKNCKKSGLHGFEIPKAIHLTPEAFSDQNNLLTPSFKLKRHEIKK 659

Query:   656 YYQVEIDQLYEKL 668
             Y++ EI +LY KL
Sbjct:   660 YFEDEIKKLYSKL 672

GO:0006631 "fatty acid metabolic process" evidence=IEA;ISS

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA;ISS

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0269242 fcsA "long-chain-fatty-acid-CoA ligase" [Dictyostelium discoideum (taxid:44689)]

 Score = 1016 (362.7 bits), Expect = 1.6e-102, P = 1.6e-102
 Identities = 237/637 (37%), Positives = 361/637 (56%)

Query:    36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV-DGKFGPYVWKTYKEVYEEVLQIVSALR 94
             S D    T +D++   + K   +  LG R  + DGK G Y W +YK+       I SAL 
Sbjct:    48 SPDGKTFTLYDVYR--INKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALV 105

Query:    95 ASGAEPGCRVGIYGANCPQWVEA-MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
               G   G R+GI+  N P+WV + M A N  SL+ V LY TLG  A+ ++++H+EI  + 
Sbjct:   106 QLGLNKGDRIGIFSINRPEWVLSDMAAMNH-SLVPVALYATLGANAIEYVVNHSEISVLL 164

Query:   154 VQDKKVKELLSPDCRSAQRLRVMVCFTSLT-AEQKEMAVQTGIKPYSWDEFLHLGKVNEM 212
              + K V+++LS        ++ +V +  L  A   +      +K Y   +F  LG+ N  
Sbjct:   165 CEGKNVEKILS---MPGTTIKTIVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPA 221

Query:   213 EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV-DDVYLS 271
             +   P P ++CT++YTSG++G+PKGV+LTH  + + V+G +     F     + +DV++S
Sbjct:   222 QHEVPSPEDLCTLLYTSGSTGNPKGVMLTHTNMVSEVAGAN-----FSPAGVIPEDVHMS 276

Query:   272 FLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK 331
             +LPLAH  +R +       G  +G++ G +  L +D+  L+PT L G PRV++++H+ + 
Sbjct:   277 YLPLAHSFERAVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLW 336

Query:   332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISG 391
               +     L++ +F+     K + + +G      +P+ D L F K K RLGGR++ ++SG
Sbjct:   337 FTVNNDSWLKKFLFNWGLNSKQSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSG 392

Query:   392 GAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEE 451
              APL  ++ EFLR   C  +V GYGL+E  G  +V +P++   VG  GP     E++L +
Sbjct:   393 SAPLDPKLAEFLRACFCCPVVSGYGLSENVGGASVAYPEDN-NVGHVGPPLSACEMKLID 451

Query:   452 VPEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVV 509
             VPEM Y   D P P GEVC+RG  +F GY+K+P+ T+E +  DGWFHTGDIG+   NG +
Sbjct:   452 VPEMNYFSTDKPCPRGEVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRWNENGTL 511

Query:   510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKK 569
              IIDRKKN+ K+SQGEYVA EYLE+V+  +P    ++VYGDSL S LV VVVP  E  +K
Sbjct:   512 SIIDRKKNIFKLSQGEYVAAEYLESVFVRSPFASQVFVYGDSLNSFLVGVVVPDFEVVQK 571

Query:   570 WAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDT-GCFSLLRGFEHIKGV 628
                    A  + EL     + N+  + L  + E  K I +++D     + L GFE +K +
Sbjct:   572 L-----FASKYPEL----DVSNH--ATLAKSKELYKEILSSFDACAAEAKLHGFEKLKHI 620

Query:   629 ILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY 665
              ++  PF  E +L+T + K KR +L   YQ  ID LY
Sbjct:   621 YVEHEPFTEENNLLTPSFKPKRPQLKERYQTIIDTLY 657

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0010009 "external side of endosome membrane" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=IEA;IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA;TAS

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA;TAS

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0036821 CG3961 [Drosophila melanogaster (taxid:7227)]

 Score = 1009 (360.2 bits), Expect = 8.8e-102, P = 8.8e-102
 Identities = 232/645 (35%), Positives = 355/645 (55%)

Query:    30 ASNG-FPS-VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVL 87
             + NG F S +  ++ T +  F            LGWR  +     PY W  Y E      
Sbjct:    88 SKNGKFVSYITENVRTLYQTFREGAYASNNGPCLGWRETLTS---PYQWINYDEALLRAK 144

Query:    88 QIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHA 147
                + + A GA P   +GIY  N P+W+   + C + SL+ VPLYDTLGP A  FI+   
Sbjct:   145 NFGAGMLALGARPKQLIGIYSQNRPEWILYEQGCYSFSLVVVPLYDTLGPDACAFIIRQT 204

Query:   148 EIDFVFVQDK-KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL 206
             ++  V V+D  K   LL    RS   L+++V    +     E A   GI+ +S+ +   L
Sbjct:   205 DMQVVIVEDDGKAAMLLEKAPRS---LKIIVAIKPIRQTTLERARSRGIQIFSFIDVEKL 261

Query:   207 G-KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV-DLFLDQFEDKMT 264
             G K N  E+ PP   ++CT+ YTSGT+G+PKGV+LTH  +   V+GV  + L   + ++ 
Sbjct:   262 GAKGNHPEV-PPTAEDLCTVCYTSGTTGNPKGVMLTHGNV---VAGVCSVILQMGDHRIR 317

Query:   265 VDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFE 324
               DV +SFLPLAH+ +R  E   +  G  VG+Y GD+  L +DL  LKPT++  VPR+  
Sbjct:   318 AGDVMVSFLPLAHMFERCCENGMYYVGGCVGFYSGDIKELTNDLKMLKPTVMPAVPRLLN 377

Query:   325 KIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGR 384
             ++++ I+  +     L+R +F+   + K   +  G  +R      D L F+KV    GG 
Sbjct:   378 RVYDKIQNDISA-SGLKRGLFNMAMRAKEKEIARGVLRRNGC--WDKLVFKKVHQAFGGN 434

Query:   385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
             LRL++ G APL+  V  F+R      +++GYG TE  G  T+    +        PVS  
Sbjct:   435 LRLMVVGSAPLAGNVLTFMRCALGCLVLEGYGQTECTGAITLTVQGDHVPNHVGPPVSC- 493

Query:   445 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQI 503
             + ++L +VPEM Y    +   GEVCVRG  +F GYYK+P+ T E+I  +GW HTGD+G  
Sbjct:   494 NAVKLVDVPEMEY--FANQNTGEVCVRGSNVFHGYYKDPEKTAEAIDSEGWHHTGDVGMW 551

Query:   504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPC 563
             LPNG ++IIDR+K++ K+SQGEY+  E +EN+Y ++  +  ++VYG+SLKS ++AVVVP 
Sbjct:   552 LPNGTLRIIDRRKHIFKLSQGEYIVPEKIENIYTLSQYVNQVYVYGESLKSCIIAVVVPD 611

Query:   564 EEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFE 623
              +  K+WA  N   G+   LC+   ++  I++++            NW  G  S L+ FE
Sbjct:   612 TDVLKQWATENNVRGTLSVLCNNKNVKELIMNDM-----------LNW--GKQSGLKSFE 658

Query:   624 HIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 668
              +K + L P PF ++  L+T T K KR +L  Y++ +++ +Y+ L
Sbjct:   659 QVKDIYLHPDPFSVQNGLLTPTFKAKRPQLKSYFKPQLEDMYKHL 703

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

UNIPROTKB|E2R463 ACSL5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1001 (357.4 bits), Expect = 6.2e-101, P = 6.2e-101
 Identities = 229/637 (35%), Positives = 359/637 (56%)

Query:    39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA 98
             SD+ T +D+F   +        LG+R        PY W +Y++V +    + S L   G 
Sbjct:    89 SDVKTMYDVFQRGLAVSDNGPCLGYRK----PNQPYKWLSYRQVSDRAEYLGSCLLHKGY 144

Query:    99 EPGC--RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156
             EP     VGI+  N P+W+ +  AC   S++ VPLYDTLG  A+ +I++ A+I  V    
Sbjct:   145 EPSSDQSVGIFAQNRPEWIISELACYTYSMVAVPLYDTLGAEAIIYIVNKADIAAVICDT 204

Query:   157 -KKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI 214
              +K   L+ + +      L++++       + KE A + GI+  S  +   LGK N  + 
Sbjct:   205 PQKASTLIENMEKGLTPGLKMIILMDPFEDDLKERAEKCGIEILSLFDAEILGKENFRKP 264

Query:   215 LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD--QFEDKMTVDDVYLSF 272
             +PP+P ++  I +TSGT+GDPKG +LTH+ I   +S V  FL   ++  K T +DV +S+
Sbjct:   265 VPPRPEDLSIICFTSGTTGDPKGAMLTHQNI---ISNVSSFLKCMEYTFKPTPEDVTISY 321

Query:   273 LPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKK 332
             LPLAH+ +R+++   +  GA VG++ GD+  L +DL  LKPTL   VPR+  +I++ ++ 
Sbjct:   322 LPLAHMFERIVQAVIYSCGARVGFFQGDIRLLPEDLKTLKPTLFPSVPRLLNRIYDKVQN 381

Query:   333 ALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG 392
               E   PL++ + +     K   +  G  +R++  + D L F K++A LGGR+  V++G 
Sbjct:   382 --EAKTPLKKFLLNLAISCKFNEVKKGIIRRDS--IWDKLIFAKIQATLGGRINFVVTGA 437

Query:   393 APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV 452
             AP+S+ V  FLR      + + YG TE     T   P +    G  G     + ++LE+V
Sbjct:   438 APISSPVLMFLRAALGCPVFEAYGQTECTAGCTFTSPGDWTS-GHVGVPLACNHVKLEDV 496

Query:   453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKI 511
             P+M Y  +++   GE+C++G  +F GY K+P+ T+E++  DGW HTGDIG+ LPNG +KI
Sbjct:   497 PDMNYFSVNNE--GEICIKGSNVFKGYLKDPEKTKEALDEDGWLHTGDIGRWLPNGTLKI 554

Query:   512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWA 571
             IDRKKN+ K++QGEY+A E +EN+Y  +  +  I+V+GDSL+S LV VVVP  E    + 
Sbjct:   555 IDRKKNIFKLAQGEYIAPEKIENIYIRSRPVSQIFVHGDSLRSSLVGVVVPDPEVLPSFV 614

Query:   572 YSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILD 631
                G  GS  ELC    ++  IL +L+   +         D G    L+ FE +K + L 
Sbjct:   615 AKLGVKGSLEELCKNNNVREAILEDLQKVGK---------DGG----LKSFEQVKNIFLQ 661

Query:   632 PRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 668
               PF +E  L+T TLK KR +L  Y++ +I+ LYE +
Sbjct:   662 LEPFSIENGLLTPTLKAKRGELSKYFRTQINSLYENI 698

GO:0003824 "catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O88813	ACSL5_RAT	6, ., 2, ., 1, ., 3	0.3401	0.8989	0.8857	yes	no
Q8JZR0	ACSL5_MOUSE	6, ., 2, ., 1, ., 3	0.3354	0.8989	0.8857	yes	no
O22898	LACS1_ARATH	6, ., 2, ., 1, ., 3	0.6801	0.9747	0.9939	yes	no
P30624	LCF1_YEAST	6, ., 2, ., 1, ., 3	0.3010	0.9049	0.87	yes	no
Q1ZXQ4	FCSB_DICDI	6, ., 2, ., 1, ., 3	0.3502	0.9509	0.9509	yes	no
Q9ULC5	ACSL5_HUMAN	6, ., 2, ., 1, ., 3	0.3532	0.8959	0.8828	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.976
3rd Layer	6.2.1.3	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028146001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (669 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00018681001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (691 aa)						•			0.900
	GSVIVG00038876001	SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (448 aa)						•			0.899
	GSVIVG00033040001	SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (428 aa)						•			0.899
	GSVIVG00009919001	SubName- Full=Chromosome undetermined scaffold_1671, whole genome shotgun sequence; Flags- Frag [...] (148 aa)						•			0.899
	GSVIVG00009515001	SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (398 aa)						•			0.899
	GSVIVG00025319001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (830 aa)						•			0.800
	GSVIVG00019100001	SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (338 aa)						•			0.800
	GSVIVG00009528001	SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (256 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	673
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	0.0
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	0.0
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	0.0
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	0.0
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	0.0
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-152
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	1e-117
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	1e-111
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	1e-104
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	1e-87
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	3e-84
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	5e-77
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	3e-75
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	2e-55
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	2e-55
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	6e-53
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	3e-47
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	1e-44
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	5e-44
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	1e-43
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	4e-41
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	7e-40
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	1e-39
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	1e-37
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	3e-37
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	2e-35
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	2e-32
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	6e-32
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	7e-32
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	1e-31
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	1e-31
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	7e-31
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	2e-27
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	8e-27
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	4e-26
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	4e-26
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	7e-25
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	1e-24
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	1e-23
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	4e-23
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	5e-22
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	6e-22
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	2e-21
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	2e-21
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	8e-21
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	8e-21
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	3e-20
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	4e-20
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	2e-19
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	2e-19
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	2e-19
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	3e-19
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	6e-19
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	2e-18
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	3e-18
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	3e-18
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	6e-18
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	6e-18
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	6e-18
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	9e-18
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	1e-17
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	2e-17
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	2e-17
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	2e-17
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	2e-17
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	2e-17
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	3e-17
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	1e-16
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	1e-16
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	2e-16
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	3e-16
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	3e-16
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	3e-16
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	4e-16
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	5e-16
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	9e-16
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	3e-15
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	5e-15
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	8e-15
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	8e-15
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	9e-15
PTZ00297	1452	PTZ00297, PTZ00297, pantothenate kinase; Provision	2e-14
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	2e-14
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	3e-14
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	4e-14
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	4e-14
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	4e-14
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	7e-14
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	3e-13
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	4e-13
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	5e-13
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	3e-12
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	3e-12
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	7e-12
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	1e-11
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	1e-11
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	5e-11
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	6e-11
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	9e-11
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	1e-10
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	1e-10
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	1e-10
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-10
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	2e-10
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	4e-10
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	4e-10
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	4e-10
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	7e-10
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	9e-10
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	3e-09
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	5e-09
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	9e-09
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	9e-09
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	1e-08
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	1e-08
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	2e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-08
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	3e-08
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	4e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	4e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	4e-08
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	4e-08
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	4e-08
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	6e-08
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	7e-08
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	1e-07
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	2e-07
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-07
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	2e-07
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	2e-07
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	3e-07
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	4e-07
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	4e-07
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	5e-07
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	7e-07
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	1e-06
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	2e-06
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	2e-06
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	3e-06
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	3e-06
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	3e-06
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	3e-06
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	5e-06
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	6e-06
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	6e-06
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	7e-06
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	7e-06
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	7e-06
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	7e-06
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	8e-06
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-05
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	3e-05
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	3e-05
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	4e-05
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	5e-05
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	5e-05
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	7e-05
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	9e-05
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	1e-04
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	1e-04
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	1e-04
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	1e-04
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	2e-04
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	2e-04
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	3e-04
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	4e-04
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	4e-04
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	4e-04
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	5e-04
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	5e-04
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	5e-04
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	5e-04
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	5e-04
TIGR01217	652	TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase	6e-04
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	8e-04
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	0.001
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	0.001
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	0.001
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	0.001
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	0.002
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	0.002
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	0.002
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	0.002
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	0.002
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.002
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	0.003
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	0.003
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	0.004
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.004
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	0.004
PLN03052	728	PLN03052, PLN03052, acetate--CoA ligase; Provision	0.004

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 1302 bits (3371), Expect = 0.0
 Identities = 518/672 (77%), Positives = 584/672 (86%), Gaps = 13/672 (1%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAAQVEEG +GKDGKPSVGPVYRNLL+  GFP +DSD+ TAWDIFS SV+KYP N+M
Sbjct: 1   MKSFAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR  VDGK GPY+WKTYKEVYEEVLQI SALRASGAEPG RVGIYG+NCPQW+ AMEA
Sbjct: 61  LGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A SLICVPLYDTLGPGAV++I+DHAEIDFVFVQDKK+KELL PDC+SA+RL+ +V FT
Sbjct: 121 CAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           S+T E+ + A Q G+K YSW +FLH+GK N  E  PP+P +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE +ATFV GVDLF++QFEDKMT DDVYLSFLPLAHILDR+IEEYFFR+GASVGYYHGD
Sbjct: 241 THEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTLLAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYKYKLAWMN GY
Sbjct: 301 LNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
             ++ASP+AD LAFRKVKA+LGGRLRL+ISGGAPLSTE+EEFLRVT CAF+VQGYGLTET
Sbjct: 361 SHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
            GPTT+ FPDEMCM+GT G  +VY+ELRLEEVPEMGY PL +PP GE+CVRGK LFSGYY
Sbjct: 421 LGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LT E + DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALEYLENVY   P
Sbjct: 481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNP 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           I+EDIWVYGDS KSMLVAVVVP EE+T KWA  NG  GSF ELCSL +L+ +ILSELK+ 
Sbjct: 541 IVEDIWVYGDSFKSMLVAVVVPNEENTNKWAKDNGFTGSFEELCSLPELKEHILSELKST 600

Query: 601 AERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 660
           AE+NK             LRGFE+IKGVIL+ +PFD+ERDLVTATLKK+RN LL YYQVE
Sbjct: 601 AEKNK-------------LRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVE 647

Query: 661 IDQLYEKLAPGR 672
           ID++Y KLA  R
Sbjct: 648 IDEMYRKLAEKR 659

Length = 660

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score =  766 bits (1979), Expect = 0.0
 Identities = 334/667 (50%), Positives = 442/667 (66%), Gaps = 18/667 (2%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
            + +  +VEE +    GKPS GPVYR++ A +G   + +D+++ W  FS +V+KYP N+M
Sbjct: 2   AETYTVKVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQM 61

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LG R   D K GPYVW TYKEVY+  ++I SA+R+ G  PG R GIYG+NCP+W+ AMEA
Sbjct: 62  LGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEA 121

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS--PDCRSAQRLRVMVC 178
           CN+  +  VPLYDTLG  AV FI++HAE+   FVQ+ K+  +LS  P C S   L+ +V 
Sbjct: 122 CNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSS--NLKTIVS 179

Query: 179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
           F  +++EQKE A + G+  +SW+EF  +G ++  E+ P Q  +ICTIMYTSGT+G+PKGV
Sbjct: 180 FGDVSSEQKEEAEELGVSCFSWEEFSLMGSLD-CELPPKQKTDICTIMYTSGTTGEPKGV 238

Query: 239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298
           +LT+  I   V   D  L   +   T +D Y S+LPLAH+ D+VIE Y   +GAS+G++ 
Sbjct: 239 ILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQ 298

Query: 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
           GD+  L +D+  LKPT+  GVPRV+++I+ GI + +     LR+++FD  Y YKL  +  
Sbjct: 299 GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRK 358

Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
           G KQ EASP  D L F K+K  LGGR+RL++SG APL   VEEFLRVT C+ L QGYGLT
Sbjct: 359 GLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLT 418

Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
           E+CG       +   MVGT G      E RLE VPEMGY  L D P GE+C+RG TLFSG
Sbjct: 419 ESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSG 478

Query: 479 YYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV 538
           Y+K  DLT E +IDGWFHTGDIG+  PNG +KIIDRKKN+ K+SQGEYVA+E LEN Y  
Sbjct: 479 YHKRQDLTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSR 538

Query: 539 APIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELK 598
            P+I  IWVYG+S +S LVAVVVP  +  + WA +N   G F  LC  ++ + YIL EL 
Sbjct: 539 CPLIASIWVYGNSFESFLVAVVVPDRQALEDWAANNNKTGDFKSLCKNLKARKYILDELN 598

Query: 599 NAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ 658
           +  ++ +             LRGFE +K + L+P PFD+ERDL+T T K KR +LL YY+
Sbjct: 599 STGKKLQ-------------LRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYK 645

Query: 659 VEIDQLY 665
             IDQLY
Sbjct: 646 DCIDQLY 652

Length = 660

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score =  739 bits (1909), Expect = 0.0
 Identities = 341/674 (50%), Positives = 463/674 (68%), Gaps = 17/674 (2%)

Query: 2   KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
           K F  QVEEGKEG DG+PSVGPVYR++ A +GFP+    +++ WD+F MSV+KYP N ML
Sbjct: 5   KKFIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPML 64

Query: 62  GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           G R  VDGK G YVW+TY+EVY+ V+++ ++LR+ G +   + GIYGAN P+W+ +MEAC
Sbjct: 65  GRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124

Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
           NA  L CVPLYDTLG GAV FI+ H+E+  VFV++KK+ EL      S + ++ +V F  
Sbjct: 125 NAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGG 184

Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
           ++ EQKE A   G+  Y+WDEFL LG+  + ++   +  +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244

Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
           +E+I T ++GV   L      +TV DVYLS+LPLAHI DRVIEE F + GA++G++ GD+
Sbjct: 245 NESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDV 304

Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
             L +DL ELKPT+   VPRV ++++ G++K L +   L++ +FD+ + YK   M  G  
Sbjct: 305 KLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQS 364

Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
             EASPL D L F KVK  LGG +R+++SG APL++ VE FLRV  C  ++QGYGLTE+C
Sbjct: 365 HVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424

Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
             T V  PDE+ M+GT GP     ++RLE VPEM Y  L   P GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYK 484

Query: 482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
             DLT+E +IDGW HTGD+G+  PNG +KIIDRKKN+ K+SQGEYVA+E +EN+Y     
Sbjct: 485 REDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQA 544

Query: 542 IEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 601
           ++ +WVYG+S +S LVA+  P ++  ++WA  NG +G +  LC   + + +IL EL   A
Sbjct: 545 VDSVWVYGNSFESFLVAIANPNQQILERWAAENGVSGDYNALCQNEKAKEFILGELVKMA 604

Query: 602 ERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI 661
           +  K             ++GFE IK + LDP PFDMERDL+T T KKKR +LL YYQ  I
Sbjct: 605 KEKK-------------MKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVI 651

Query: 662 DQLY----EKLAPG 671
           D++Y    EKLA  
Sbjct: 652 DEMYKTTNEKLASR 665

Length = 666

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  730 bits (1886), Expect = 0.0
 Identities = 275/596 (46%), Positives = 365/596 (61%), Gaps = 59/596 (9%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           GPY W +YKEV E  L I S LRA G +PG ++GI+  N P+W+   +AC + SL+ VPL
Sbjct: 1   GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
           YDTLG  A+ +IL+  EI  VF    KV                                
Sbjct: 61  YDTLGEEAIEYILNETEISIVFCDAVKV-------------------------------- 88

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
                 YS++E   LGK N++   PP+P ++ TIMYTSGT+G+PKGV+LTH  I   V+G
Sbjct: 89  ------YSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAG 142

Query: 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMEL 311
           ++  + +F   +   DVY+S+LPLAHI +RV+E      G  +GYY GD   L+ D+ EL
Sbjct: 143 INKIVPEF---IGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKEL 199

Query: 312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL 371
           KPT+  GVPRV ++I++GI   +     L+R +F+  Y YKLA +  G     ASPL D 
Sbjct: 200 KPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRG--HGYASPLWDK 257

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
           L F+K+KA LGGR+RL++SGGAPLS + +EFLRV     ++QGYGLTETC   T+  P +
Sbjct: 258 LVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTLSDPGD 317

Query: 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI- 490
               G  GP     E++L +VPEMGY   DDPP GE+C+RG  +F GYYKNP+ T E+  
Sbjct: 318 TT-TGHVGPPLPCCEIKLVDVPEMGYFAKDDPPRGEICIRGPNVFKGYYKNPEKTAEAFD 376

Query: 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGD 550
            DGWFHTGDIG+ LP+G +KIIDRKKNL K+SQGEYVALE LEN+Y  +P+++ I VYGD
Sbjct: 377 EDGWFHTGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICVYGD 436

Query: 551 SLKSMLVAVVVPCEEDTKKWAYSNGHA-GSFLELCSLVQLQNYILSELKNAAERNKVIFA 609
           SLKS LVA+VVP E+  +KWA  NG   G F ELC+  +L+  IL +L    + N     
Sbjct: 437 SLKSFLVAIVVPDEDVLEKWAAENGGGGGDFEELCNNKKLKKAILKDLNEIGKENG---- 492

Query: 610 NWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY 665
                    L+GFE +K + L P PF  E  L+T T K KR +L   Y+ EID++Y
Sbjct: 493 ---------LKGFEIVKAIHLTPEPFTPENGLLTPTFKLKRPQLKKRYKKEIDEMY 539

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score =  536 bits (1383), Expect = 0.0
 Identities = 258/656 (39%), Positives = 365/656 (55%), Gaps = 37/656 (5%)

Query: 24  VYRNLLAS----NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTY 79
           VYR+  +     + FP    ++ T  D F  +V+ +   + LG R  VDG  G Y W TY
Sbjct: 23  VYRSARSPLKLVSRFPDHP-EIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTY 81

Query: 80  KEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGA 139
            E       I S L   G   G  VG+Y  N P+W+    AC+A S + VPLYDTLGP A
Sbjct: 82  GEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDA 141

Query: 140 VNFILDHAEIDFVFVQDKKVKELLS--PDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
           V FI++HAE+  +F   + +  LLS   +  S   +R++V           +   TG++ 
Sbjct: 142 VKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPS---VRLIVVVGGADEPLPSLPSGTGVEI 198

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
            ++ + L  G+ +     PP+P ++ TI YTSGT+G PKGVVLTH  +   V+G  L   
Sbjct: 199 VTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTK 258

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 317
            +       DV++S+LPLAHI +RV +      G +VG+Y GD   L DDL  L+PT+  
Sbjct: 259 FY-----PSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFC 313

Query: 318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKV 377
            VPR++ +I++GI  A++E   L+ R+F+A Y  K   +  G   +  SP+ D L F K+
Sbjct: 314 SVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENG---KNPSPMWDRLVFNKI 370

Query: 378 KARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET-CGPTTVCFPDEMCMVG 436
           KA+LGGR+R + SG +PLS +V EFLR+     +++GYG+TET C  + +   D +   G
Sbjct: 371 KAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEGDNLS--G 428

Query: 437 TAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESI-IDGW 494
             G  +   E++L +VPEM Y+  D P P GE+CVRG  +F GYYK+   TRE I  DGW
Sbjct: 429 HVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGW 488

Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS 554
            HTGDIG  LP G +KIIDRKKN+ K++QGEY+A E +ENVY     +   +VYGDSL S
Sbjct: 489 LHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNS 548

Query: 555 MLVAVVVPCEEDTKKWAYSNGH-AGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDT 613
            LVAVVV   E  K WA S G       +LC+  +++  +L+++       +        
Sbjct: 549 SLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQ-------- 600

Query: 614 GCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA 669
                LRGFE  K V L P PF +E  L+T T K KR +   Y+   I  +Y +LA
Sbjct: 601 -----LRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAISDMYAELA 651

Length = 651

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  453 bits (1168), Expect = e-152
 Identities = 215/612 (35%), Positives = 317/612 (51%), Gaps = 59/612 (9%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G +   TY+E+YE V  + S L + G   G RV I+ AN P+W  A  A  AL  + VP+
Sbjct: 41  GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPI 100

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQD----KKVKELLSPDCRSAQRLRVMVCFTSLTAEQK 187
           Y T  P  + +IL+ +E   +FV++      V  +L  DC     L V++       E K
Sbjct: 101 YSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLE-DCPKVVDLIVIIDLVREAVEAK 159

Query: 188 EMAVQTGIKPYSWDEFLHLGKVNEM----EILPPQPFNICTIMYTSGTSGDPKGVVLTHE 243
            +     +     DE + L  ++       I PP+P ++ TI+YTSGT+G PKGV+LTH 
Sbjct: 160 AL-----VLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHR 214

Query: 244 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE-EYFFRRGASVGYYHGDLN 302
            +   V+G+D  L          D  LSFLPLAHI +R  E       G +V +   D  
Sbjct: 215 NLLAQVAGIDEVLPPI----GPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFK-EDPR 269

Query: 303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM---G 359
            L +DL E++PT++ GVPRV+EK+++GI + + +   +RR++F    K     ++    G
Sbjct: 270 TLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLG 329

Query: 360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTCCAFLVQGYGLT 418
                   +AD L FRK++  LGGR+R  +SGGAPLS E+  F R +     +++GYGLT
Sbjct: 330 GGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSLGIP--ILEGYGLT 387

Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
           ET    +V  PD   ++GT G      E+++ +              GE+ VRG  +  G
Sbjct: 388 ETSAVVSVNPPDRF-VLGTVGKPLPGIEVKIADD-------------GEILVRGPNVMKG 433

Query: 479 YYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC 537
           YYKNP+ T E+   DGWF TGD+G++  +G + I  RKK LIK+S G+ +A E +E+   
Sbjct: 434 YYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLA 493

Query: 538 VAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHA--GSFLELCSLVQLQNYILS 595
            +P+IE I V GD  K  LVA++VP  +  +KWA S       S  EL    +L   IL 
Sbjct: 494 KSPLIEQICVVGDD-KKFLVALIVPDFDALEKWAESLNKVISASREELARDPKLLKLILP 552

Query: 596 ELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI 655
            +    +R               L GFE IK  +L P+ F  E   +T TLK KR+ +L 
Sbjct: 553 RVNKGNKR---------------LFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILD 597

Query: 656 YYQVEIDQLYEK 667
            Y+ EI+ +Y +
Sbjct: 598 RYKDEIEAVYSR 609

Length = 613

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  357 bits (919), Expect = e-117
 Identities = 179/588 (30%), Positives = 265/588 (45%), Gaps = 138/588 (23%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G +   T+ E+ E V ++ + L A G +PG RV I   N P+WV A  A  A   + VP+
Sbjct: 1   GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPI 60

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
           Y T  P  V +IL+ +    VFV+DK       PD      L  ++ +TS T        
Sbjct: 61  YPTSSPEEVAYILNDSGARVVFVEDK-------PD-----DLATLI-YTSGT-------- 99

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
            TG                                       +PKGV+LTH  +    + 
Sbjct: 100 -TG---------------------------------------NPKGVMLTHRNLLAQAAA 119

Query: 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASVGYYHGDLNALRDDLME 310
           +   +      ++  D  LSFLPLAH+ ++ + EY     GA V  +      L +DL E
Sbjct: 120 LLEVIP-----LSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARV-NFAESPETLLEDLRE 173

Query: 311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD 370
           ++PT+   VPRV+EKI+ GI+  +    PL+R++F                         
Sbjct: 174 VRPTVFFAVPRVWEKIYAGIEAKVAAAGPLKRKLFRW----------------------- 210

Query: 371 LLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR---VTCCAFLVQGYGLTETCGPTTVC 427
                   A  GGRLR  +SGGAPL  EV EF R   +     +++GYGLTET G  TV 
Sbjct: 211 --------ALGGGRLRFAVSGGAPLPPEVLEFFRALGIP----ILEGYGLTETSGVATVN 258

Query: 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487
            P ++ + GT G      E+R+ E              GE+ VRG  +  GYYKNP+ T 
Sbjct: 259 RPGDIRI-GTVGKPLPGVEVRIAED-------------GEILVRGPNVMKGYYKNPEATA 304

Query: 488 ESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIW 546
           E++  DGW HTGDIG++  +G + I DRKK+LI  + G+ +A + +EN    +P I    
Sbjct: 305 EALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAV 364

Query: 547 VYGDSLKSMLVAVVVPCEEDTKKWAYSNG-HAGSFLELCSLVQLQNYILSELKNAAERNK 605
           V GD     L A++V   E  +KWA  +G    ++ +L    +++  I  E++ A  R  
Sbjct: 365 VVGDDRPY-LTALIVLDPEALEKWAEQHGLPFTTYADLAEDPEVRALIRKEVEEANAR-- 421

Query: 606 VIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKL 653
                        L   E IK  +L P+ F +E   +T T+K +R  +
Sbjct: 422 -------------LARVEQIKKFVLLPKEFSIEDGELTPTMKLRRRVV 456

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score =  349 bits (898), Expect = e-111
 Identities = 225/675 (33%), Positives = 338/675 (50%), Gaps = 77/675 (11%)

Query: 41  LNTAWD-------IFSMSVQKYPGNRMLGWRPFV--------DGK------FGPYVWKTY 79
           + T W+       +F  S +KY   R+LG R  +        DG+       G Y W TY
Sbjct: 50  VETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITY 109

Query: 80  KEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGA 139
            +V+E V    S L A G     RV I+     +W+ A++ C   ++  V +Y +LG  A
Sbjct: 110 GQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEA 169

Query: 140 VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG-IKPY 198
           +   L+  E+  V    K++K+L+    +     RV +       +       +      
Sbjct: 170 LCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRV-IYMDDEGVDSDSSLSGSSNWTVS 228

Query: 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258
           S+ E   LGK N ++   P P +I  IMYTSG++G PKGV++TH  I   V+GV      
Sbjct: 229 SFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGV------ 282

Query: 259 FEDKMTV------DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD------ 306
               MTV      +DVYL++LPLAHIL+   E      GA++GY  G    L D      
Sbjct: 283 ----MTVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGY--GSPLTLTDTSNKIK 336

Query: 307 -----DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN---M 358
                D   LKPTL+  VP + +++ +G++K ++    L +++FD  YK +LA +     
Sbjct: 337 KGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWF 396

Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
           G    E   L D L F+K++A LGGR+R ++SGGAPLS + + F+ +   A + QGYGLT
Sbjct: 397 GAWGLEKL-LWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLT 455

Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRGKTLFS 477
           ETC   T    D+   VG  GP      ++L    E GY   D P P GE+ + G ++  
Sbjct: 456 ETCAGATFSEWDDTS-VGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTL 514

Query: 478 GYYKNPDLTRESI-IDG----WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYL 532
           GY+KN + T E   +D     WF+TGDIGQ  P+G ++IIDRKK+++K+  GEYV+L  +
Sbjct: 515 GYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKV 574

Query: 533 ENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHA-GSFLELCSLVQLQN 591
           E    V+P +++I V+ D   S  VA+VVP ++  +KWA   G    +F ELC   +   
Sbjct: 575 EAALSVSPYVDNIMVHADPFHSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVK 634

Query: 592 YILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRN 651
            +   L  AA+  +             L  FE    + L P P+  E  LVTA LK KR 
Sbjct: 635 EVQQSLSKAAKAAR-------------LEKFEIPAKIKLLPEPWTPESGLVTAALKLKRE 681

Query: 652 KLLIYYQVEIDQLYE 666
           ++   ++ ++ +LYE
Sbjct: 682 QIRKKFKDDLKKLYE 696

Length = 696

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score =  332 bits (853), Expect = e-104
 Identities = 184/615 (29%), Positives = 285/615 (46%), Gaps = 63/615 (10%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E++E ++     L   G   G  V IY     +W+ ++    + S++   +Y  LG 
Sbjct: 123 TYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGE 182

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLS-------PDCRSAQRLRVMVCFTSLTAEQKEMA 190
            A+ + L   E   +    K V  LL        P+         ++   SL A      
Sbjct: 183 DALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNT-------TIIYLDSLPASVDTEG 235

Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIAT 247
            +      +W + +  G           P N   +  IMYTSGT+GDPKGV+ TH ++  
Sbjct: 236 CRL----VAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTA 291

Query: 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD- 306
            +  ++  L+        D+ Y S+LPLAHI++  +   F  RGA +G+  G    L D 
Sbjct: 292 GILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GSPRTLTDT 349

Query: 307 ------DLMELKPTLLAGVPRVFEKIHEGIKKALEELRP----LRRRIFDALYKYKLAWM 356
                 DL E +P  L GVPR+F+     IKKA+E   P    L+RR+FD  Y+ +L  +
Sbjct: 350 FARPHGDLTEFRPVFLIGVPRIFDT----IKKAVEAKLPPVGSLKRRVFDHAYQSRLRAL 405

Query: 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYG 416
             G      +P  +   F   +A LGGR+R ++SGG PLS   +EF+ V     ++QG+G
Sbjct: 406 KEGKD----TPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNV-VFGMVIQGWG 460

Query: 417 LTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRGKTL 475
           LTET     +    ++      G +    E++L +  E  Y   D P P GE+ +RG  L
Sbjct: 461 LTETVCCGGIQRTGDL-EPNAVGQLLKGVEMKLLDTEE--YKHTDTPEPRGEILLRGPFL 517

Query: 476 FSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
           F GYYK  +LTRE +  DGWFHTGD+G I  NG ++II R K L K   GEY+ALE LE 
Sbjct: 518 FKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEA 577

Query: 535 VYCVAPII--EDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY 592
           +Y    ++    + V     +S + A+V+  E     +A  +G  G +  +         
Sbjct: 578 LYGQNELVVPNGVCVLVHPARSYICALVLTDEAKAMAFAKEHGIEGEYPAI--------- 628

Query: 593 ILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNK 652
               LK+   + K   +  +T   +  + FE ++ V +    +  E  ++TA +K KR  
Sbjct: 629 ----LKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRV 684

Query: 653 LLIYYQVEIDQLYEK 667
           +   Y   I +L+  
Sbjct: 685 IDERYADLIKELFAD 699

Length = 700

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  279 bits (717), Expect = 1e-87
 Identities = 125/478 (26%), Positives = 194/478 (40%), Gaps = 74/478 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+ E   ++ +ALRA G  PG RV I   N P+WV A+ A        VPL  +L  
Sbjct: 1   TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + +IL+ +E   +   D+ + +LL    +    L +++                G   
Sbjct: 61  ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGD------------DGEGL 108

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
              D+ L  G   E    P  P ++  I+YTSGT+G PKGV+LTH  +    +G+     
Sbjct: 109 DLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERF- 167

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPT 314
                +T  D  L  LPL               G ++        D   L D + + K T
Sbjct: 168 ----GLTPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVT 223

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF 374
           +L GVP +   + +  ++   +L                                     
Sbjct: 224 VLYGVPTLLRLLLKAPEEKKYDLS------------------------------------ 247

Query: 375 RKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433
                     LRLV+SGG PL  E+            LV GYG TET    T   P +  
Sbjct: 248 ---------SLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPE 298

Query: 434 M-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII- 491
           +  G+ G       + ++ + E G  P+     GE+C+RG  +  GY  +P+LT E  + 
Sbjct: 299 VKPGSIGR--PLPGVEVKVLDEEG-EPVPPGEVGELCIRGPGVARGYLNDPELTAERFVE 355

Query: 492 DGWF--HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 547
           DGW    TGD+G+   +G ++I+ RK + +KI  GE +    +E V    P + +  V
Sbjct: 356 DGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIR-GERIEPGEIEAVLLEHPGVAEAAV 412

Length = 412

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  273 bits (701), Expect = 3e-84
 Identities = 170/605 (28%), Positives = 263/605 (43%), Gaps = 124/605 (20%)

Query: 68  DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127
            G++  Y   T+ +V ++  +I +AL++ G EPG R+ I   NC +W+ A  A      +
Sbjct: 1   GGQWHEY---TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHV 57

Query: 128 CVPLYDTLGPGAVNFILDHAEIDFVFV----QDKKVKELLSPD--CRSAQRLRVMVCFTS 181
            VPLY TL    + ++L+H++   +FV        +K  +              +     
Sbjct: 58  SVPLYPTLTAETIRYVLEHSDAKALFVGKLDDWDAMKAGVPEGLPTIILFPYSTLKDH-- 115

Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF--NICTIMYTSGTSGDPKGVV 239
                           Y WD+ L      E     P P   ++ TI+YTSGT+G PKGV+
Sbjct: 116 ----------------YKWDDLL---AATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVM 156

Query: 240 LTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEY-FFRRGASVGYYH 298
           L+    A    G    +      +T +D  LS+LPLAHI +RVI E      GA V ++ 
Sbjct: 157 LSFGAFAFAAQGTIEII-----GLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEV-FFV 210

Query: 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGI-----KKALEELRPLRRRIFDALYKYKL 353
             L+    DL   +PT+   VPR++ K  +GI      + L  L  L+  I  +L K   
Sbjct: 211 ESLDTFAADLQRARPTVFFSVPRLWTKFQQGILAKLPPEKLNLL--LKIPILSSLVK--- 265

Query: 354 AWMNMGYKQREASPLADLLAFRKVKARLG-GRLRLVISGGAPLSTEVEEFLR---VTCCA 409
                                +K+   LG  + RL  SG AP+   +  + R   +    
Sbjct: 266 ---------------------KKILKGLGLDQARLAGSGAAPMPPALIAWYRKLGLP--- 301

Query: 410 FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVC 469
            + +GYG+TE    +T+ +P +   +GT G      EL++ E              GE+ 
Sbjct: 302 -ICEGYGMTENFAYSTLNYPGDR-RIGTVGKPIPGVELKISED-------------GEIL 346

Query: 470 VRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
           +R   L SGYYK+P+ T E+   DGW HTGD G+I  +G +KI  R K L K S+G+YVA
Sbjct: 347 IRSPGLMSGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYVA 406

Query: 529 LEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ 588
              +EN+    P +E + V G  L    VA+VV  E        ++      +E  SL Q
Sbjct: 407 PAPIENLLSANPHVEQVCVVGSGLPQP-VALVVLSEA-------ADPLEREEVE-ESLQQ 457

Query: 589 LQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKK 648
               + SEL++                       E +  +++    + +E  L+T TLK 
Sbjct: 458 TLAKVNSELES----------------------HERLSALVVVKEAWTVENGLLTPTLKI 495

Query: 649 KRNKL 653
           KRN +
Sbjct: 496 KRNVV 500

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  255 bits (654), Expect = 5e-77
 Identities = 136/497 (27%), Positives = 204/497 (41%), Gaps = 76/497 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+     ++ +AL+A G +PG RV I   N P+++ A  A      + VPL   L P
Sbjct: 40  TYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTP 99

Query: 138 GAVNFILDHAEIDFVFVQD--KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195
             + +IL+ A    +        + E ++        + ++                   
Sbjct: 100 RELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVG-------------DADDR 146

Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
            P + +     G   + +  P  P ++  ++YTSGT+G PKGVVLTH  +   ++     
Sbjct: 147 LPITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNL---LANAAGI 203

Query: 256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
                  +T DDV LS+LPL HI            G  VG     L A           L
Sbjct: 204 AAALGGGLTPDDVVLSWLPLFHIF-----------GLIVG-----LLAP----------L 237

Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM----NMGYKQREASPLADL 371
           L G   V           L         +   + KYK+  +        +      L D 
Sbjct: 238 LGGGTLVL----------LSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRE------LLDN 281

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPD 430
                    L   LRLV+SGGAPL  E+ E F        +++GYGLTET    T+  PD
Sbjct: 282 PEKDDDD--LSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPD 339

Query: 431 EMC-MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRES 489
           ++    G+ G      E+R+  V   G   L     GE+ VRG  +  GY+  P+ T E+
Sbjct: 340 DLLAKPGSVGRPLPGVEVRI--VDPDGGEVLPGEV-GEIWVRGPNVMKGYWNRPEATAEA 396

Query: 490 II-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY 548
              DGW  TGD+G +  +G + I+ R K+LI    GE +  E +E V    P + +  V 
Sbjct: 397 FDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISG-GENIYPEEIEAVLAEHPAVAEAAVV 455

Query: 549 G---DSLKSMLVAVVVP 562
           G   +     +VAVVV 
Sbjct: 456 GVPDERWGERVVAVVVL 472

Length = 534

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score =  252 bits (646), Expect = 3e-75
 Identities = 179/623 (28%), Positives = 280/623 (44%), Gaps = 73/623 (11%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV-EAMEACNALSLICVPLYDTLG 136
           TYK+ YE   Q   A    G E    VGI G N P+W   A+ A  A   I V +Y T  
Sbjct: 10  TYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGG-IAVGIYTTNS 68

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
           P A  ++ + +E + + V + K  + +         L+ ++ +     ++KE        
Sbjct: 69  PEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQY-REPLKEKE------PN 121

Query: 197 PYSWDEFLHLGK----VNEMEILPPQ-PFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
            YSW EF+ LG+         I+  Q P   CT++YTSGT+G PKGV+L+H+ I      
Sbjct: 122 LYSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTAKA 181

Query: 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVG--YYHGDLNALRDDLM 309
               +D         +  +S+LPL+HI  ++++ +      SVG   Y    +AL+  L+
Sbjct: 182 AVKHMDLRTVG---QESVVSYLPLSHIAAQILDIWL---PISVGGCVYFAQPDALKGTLV 235

Query: 310 ----ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF----DALYKYKLAWMNMGYK 361
               E++PT   GVPRV+EKI E +K    +   L+R+I         +  L  M     
Sbjct: 236 KTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLMGGESP 295

Query: 362 QREASPLADLLAFRKVKARLG-GRLRLVISGGAPLSTEVEEFLRVTCCAFL------VQG 414
                 LA  L F+KV+  LG  R +   +G AP+S E  EF       FL      ++ 
Sbjct: 296 PPMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEF-------FLSLNIPIMEL 348

Query: 415 YGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT 474
           YG++ET GP TV  P     + + G      E ++      G         GE+C+ G+ 
Sbjct: 349 YGMSETSGPHTVSNPQNY-RLLSCGKALPGCETKIHNPDADGI--------GEICIWGRH 399

Query: 475 LFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLE 533
           +F GY    + T E+I  DGW H+GD+G +  +G + I  R K LI  + GE V    +E
Sbjct: 400 VFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGRIKELIITAGGENVPPVPIE 459

Query: 534 N-VYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFL-----ELCSLV 587
             V    PII +  + GD  K + + + + CE D +      G     L     E C L+
Sbjct: 460 EAVKKELPIISNAMLVGDKRKFLSMLLTLKCEVDPE-----TGEPLDNLTEEAIEFCRLL 514

Query: 588 QLQNYILSELKNAAERNKVIFANWDTGC-----FSLLRGFEHIKGVILDPRPFDMERDLV 642
                 +SE+   A ++ +++   + G       ++    +  K VIL  + F +    +
Sbjct: 515 GSHATTVSEI--LAGKDPLVYEAIEEGIKRVNKEAISNAQKVQKWVIL-EKDFSVPGGEL 571

Query: 643 TATLKKKRNKLLIYYQVEIDQLY 665
             T+K KR  +   Y+ EID+LY
Sbjct: 572 GPTMKLKRPVVAKKYKDEIDKLY 594

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  195 bits (499), Expect = 2e-55
 Identities = 125/489 (25%), Positives = 185/489 (37%), Gaps = 125/489 (25%)

Query: 46  DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
           D+   + +++P    L    F   K       TY E+ E   +  + L+  G + G RV 
Sbjct: 3   DLLERAARRFPDRPAL---TFFGRKL------TYAELDELSDRFAAYLQQLGVKKGDRVA 53

Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
           +   NCPQ+  A         + VP         VN +    E++     D   K     
Sbjct: 54  LMLPNCPQFPIAYFGILKAGAVVVP---------VNPLYTPRELEHQL-NDSGAK----- 98

Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTI 225
                    V++   S        A+ +G                    +   P ++  +
Sbjct: 99  ---------VLIVAISFED-----ALASGAPLP--------------LPVELSPDDLAVL 130

Query: 226 MYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
            YT GT+G PKG +LTH  +   V+ V       +D    +D +L+ LPL HI       
Sbjct: 131 QYTGGTTGVPKGAMLTHRNL---VANVQQIAAWVKDLREGEDRFLTALPLFHI------- 180

Query: 286 YFFRRGASVGYYHGDLNAL----RD-DLMEL----KPTLLAGVPRVFEKIHEGIKKALEE 336
           +       +G   G  N L    R  ++++     + T+  GVP                
Sbjct: 181 FGLTVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVP---------------- 224

Query: 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
                      LY                     LL   + K      LRL ISGGAPL 
Sbjct: 225 ----------TLYNA-------------------LLNHPEFKKYDFSSLRLCISGGAPLP 255

Query: 397 TEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PV-SVYSELRLEEVP 453
            EV E F   T    LV+GYGLTET   TTV   D     G+ G P+     ++  +E  
Sbjct: 256 VEVAERFEEKTGAP-LVEGYGLTETSPVTTVNPLDGERKPGSIGLPLPGTEVKIVDDEGN 314

Query: 454 EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID 513
           E+   P  +   GE+ VRG  +  GY+  P+ T E + DGW  TGDIG +  +G   I+D
Sbjct: 315 EL---PPGEV--GELVVRGPQVMKGYWNRPEETAEVLTDGWLRTGDIGYMDEDGYFYIVD 369

Query: 514 RKKNLIKIS 522
           RKK++I + 
Sbjct: 370 RKKDMIIVG 378

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  196 bits (502), Expect = 2e-55
 Identities = 138/525 (26%), Positives = 199/525 (37%), Gaps = 133/525 (25%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E V ++ +ALRA G + G RV ++  N  +++EA  A   +  +  P+   L P
Sbjct: 33  TYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKP 92

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + +IL+ AE   V V  + V  L      +A   ++    T +       A     + 
Sbjct: 93  EEIAYILNDAEDRVVLVDSEFVPLL------AAILPQLPTVRTVIVEGDGPAA-PLAPEV 145

Query: 198 YSWDEFLHLGKVNEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
             ++E L        +       +      ++YTSGT+G PKGVVL+H            
Sbjct: 146 GEYEELL----AAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSH---RNLFLHSLA 198

Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGAS-VGY---YHG---------DL 301
                  K++ DDVYL  +P+ H+             A  + Y     G         D 
Sbjct: 199 VCAWL--KLSRDDVYLVIVPMFHV------------HAWGLPYLALMAGAKQVIPRRFDP 244

Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
             L D +   + T    VP +                                   M  K
Sbjct: 245 ENLLDLIETERVTFFFAVPTI---------------------------------WQMLLK 271

Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTET 420
              A    D              LRLVI GGA L    + EF         VQGYG+TET
Sbjct: 272 APRAYF-VDF-----------SSLRLVIYGGAALPPALLREFKEKFGIDL-VQGYGMTET 318

Query: 421 CGPTTVCFPDE--------MCMVGTAGPVSVYSELRL-----EEVPEMGYSPLDDPPCGE 467
               +V  P++            G   P  V  E R+     +E+P  G         GE
Sbjct: 319 SPVVSVLPPEDQLPGQWTKRRSAGRPLP-GV--EARIVDDDGDELPPDGGEV------GE 369

Query: 468 VCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV 527
           + VRG  L  GY+  P+ T E+I  GW HTGD+G I  +G + I DR K++I IS GE +
Sbjct: 370 IIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDEDGYLYITDRIKDVI-ISGGENI 428

Query: 528 -ALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVV-VPCEEDTKKW 570
              E LE+     P + +            VAV+ VP E    KW
Sbjct: 429 YPRE-LEDALYGHPAVAE------------VAVIGVPDE----KW 456

Length = 521

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score =  194 bits (495), Expect = 6e-53
 Identities = 124/368 (33%), Positives = 188/368 (51%), Gaps = 16/368 (4%)

Query: 187 KEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA 246
           KE A + GI    +D+     K    +I    P  I +I+YTSGTSG PKGV+L+++ + 
Sbjct: 272 KEKAKKLGISIILFDDMTK-NKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLY 330

Query: 247 TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD 306
             V  V L       K      +LS+LP++HI +RVI    F  G ++  +  D+N    
Sbjct: 331 NTV--VPLCKHSIFKKYNPKT-HLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSK 387

Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
           D+   K  +LAGVP+VF +I+  I   +  L PL+R +   +   + +  N G+ +    
Sbjct: 388 DIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKF--- 444

Query: 367 PLADLLAF-RKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTT 425
            L  +     K+K ++   L ++++GG  LS ++ E L V       QGYGLTET GP  
Sbjct: 445 -LEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIF 503

Query: 426 VCFPDEMCMVGTAGPVS--VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNP 483
           V   D+       GP+S     ++R  E     Y   D  P GE+ ++  ++FSGY+   
Sbjct: 504 VQHADDNNTESIGGPISPNTKYKVRTWET----YKATDTLPKGELLIKSDSIFSGYFLEK 559

Query: 484 DLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
           + T+ +   DG+F TGDI QI  NG +  +DR K L+K+SQGEY+  + L N+Y     I
Sbjct: 560 EQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFI 619

Query: 543 EDIWVYGD 550
               VYGD
Sbjct: 620 NFCVVYGD 627

Length = 746

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  173 bits (441), Expect = 3e-47
 Identities = 128/516 (24%), Positives = 203/516 (39%), Gaps = 93/516 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ ++ ++ L++   LR  G + G  V +   N  ++      C A   I      +  P
Sbjct: 12  TFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYTP 71

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             +   L  ++   +F  D    + +    +    +  ++   S        A    ++ 
Sbjct: 72  DELAHQLKISKPKLIFC-DPDELDKVKEAAKELGPVVRIIVLDS--------APDGVLRI 122

Query: 198 YSWDEFLHLGKVNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
               E        E E  P    +       ++Y+SGT+G PKGV+L+H+ I   ++ + 
Sbjct: 123 EDLLEPRLGA---EDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNI---IANLS 176

Query: 254 LFLDQF-EDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELK 312
              D    +  + +DV L+FLP  H                +                  
Sbjct: 177 QVQDTLKGNPDSSNDVVLTFLPFYHA-------------YGLTTTLA------------- 210

Query: 313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY-----KYKLAWMNMGYKQREASP 367
            +LL G   +                    +     +     KYK+  + +        P
Sbjct: 211 -SLLCGATVIIM-----------------PKFDSETFLKLIEKYKVTSLFL------VPP 246

Query: 368 LADLLAFRKV--KARLGGRLRLVISGGAPLSTEVEEFLRV-TCCAFLVQGYGLTETCGPT 424
           +A  LA   +  K  L   LR++ SG APLS E++E LR       + QGYG+TET   T
Sbjct: 247 IAVALAKSPLVDKYDLSS-LRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPAT 305

Query: 425 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
           T+  P +    G+ G +    E ++  V E G   L     GE+CV+G  +  GY  NP+
Sbjct: 306 TLTPPGD-EKPGSVGRLVPNVEAKI--VDEDGGKSLGPNERGELCVKGPQIMKGYLNNPE 362

Query: 485 LTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 543
            T+E+I  DGW HTGDIG    +G   I+DRKK LIK  +G  V    LE V    P + 
Sbjct: 363 ATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKY-KGYQVPPAELEAVLLEHPKVA 421

Query: 544 DIWVYG--DSLKSML-VAVVVP------CEEDTKKW 570
           D  V G  D +   L  A VV        E++ K +
Sbjct: 422 DAAVIGIPDEVAGELPRAYVVLKPGSKLTEQEVKDY 457

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  165 bits (419), Expect = 1e-44
 Identities = 131/498 (26%), Positives = 197/498 (39%), Gaps = 126/498 (25%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ +   ++ +AL   G  PG  V     N  ++V    AC  +  +  P+      
Sbjct: 3   TYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYRE 62

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + FIL  A                        R RV+                    P
Sbjct: 63  RELGFILRQA------------------------RARVLFV------------------P 80

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFL 256
             +  F +             P ++  ++YTSGT+G+PKGV+ TH T+ A   S V+   
Sbjct: 81  DEFRGFDYAA----------MPDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERL- 129

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
                 +T DDV L   PLAHI                G+ +G         +EL   LL
Sbjct: 130 -----GLTPDDVVLMPSPLAHI---------------TGFLYG---------LEL--PLL 158

Query: 317 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP-LADLLAFR 375
            G   V            +   P   R  + + ++ + +  MG     A+P LADLLA  
Sbjct: 159 LGATVVL----------QDRWDP--ARALELIREHGVTFT-MG-----ATPFLADLLAAA 200

Query: 376 KVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--EM 432
                    LR+ + GGAP+  E             +V+ YG+TE     TV  PD  + 
Sbjct: 201 DAAGPDLPSLRVFLCGGAPVPRELARRAAEALGAK-VVRAYGMTE-VPLVTVGTPDDPDD 258

Query: 433 CMVGTAGPVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487
               T G      E+R+      +VP     P ++   GE+ VRG  LF GY   PD T 
Sbjct: 259 KRAATDGRPVPGVEVRIVDDDGNDVP-----PGEE---GELQVRGPQLFLGYLDPPDNTE 310

Query: 488 ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 547
               DGWF TGD+G++  +G ++I  RKK++I I  GE ++   +E++    P + ++ V
Sbjct: 311 AFTDDGWFRTGDLGRLDADGYLRITGRKKDII-IRGGENISAREIEDLLLRHPAVAEVAV 369

Query: 548 YG---DSLKSMLVAVVVP 562
                + L   + AVVVP
Sbjct: 370 VAMPDERLGERVCAVVVP 387

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  160 bits (408), Expect = 5e-44
 Identities = 105/355 (29%), Positives = 150/355 (42%), Gaps = 63/355 (17%)

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           +   I+YTSGT+G PKGVVL+H      ++             T  DV LS LPL H++ 
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSH---RNLLANAQALAQAIGL--TEGDVLLSVLPLFHVVG 55

Query: 281 RVIEEYF-FRRGASVGYYHGDLNALR--DDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
                      G +V  Y G    L   + + + + T+L GVP +++ +           
Sbjct: 56  GGSGLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDAL----------A 105

Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
           +    R       Y L+                              LRL+ISGG PLS 
Sbjct: 106 KAAEDR------GYDLS-----------------------------SLRLLISGGEPLSP 130

Query: 398 EV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMG 456
           E+ E F        +++GYGLTET   T+     E+   GT G      E+R+  V E G
Sbjct: 131 ELLERFEERPGAP-ILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRV--VDEEG 187

Query: 457 YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRK 515
             PL     GE+ VRG  +  GY+ NP  T  +   DGW+ TGD+G +   G + I  R 
Sbjct: 188 -KPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDEEGYLYITGRS 246

Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKS-MLVAVVVPCEEDT 567
           K+LIK+  GE V    +E+V    P + +  V G  D  +   +VA VV      
Sbjct: 247 KDLIKVG-GENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERIVAFVVLRPGAD 300

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  163 bits (416), Expect = 1e-43
 Identities = 119/462 (25%), Positives = 179/462 (38%), Gaps = 95/462 (20%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+   V +  +AL A G   G RV I+  N P WV A         + VPL      
Sbjct: 32  TYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTA 91

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               +IL   +   +FV        L  D  +  RL  +        E+         K 
Sbjct: 92  DEAAYILARGDAKALFVLG----LFLGVDYSATTRLPALEHVVICETEE---DDPHTEKM 144

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
            ++ +FL  G   E       P ++  I++TSGT+G PKG +LTH  + +  +    +L 
Sbjct: 145 KTFTDFLAAGDPAERA-PEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLG 203

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF---------FRRGASVGYYHGDLNALRDDL 308
                +T  D YL+  P  H+        F           RGA++       +   D++
Sbjct: 204 -----LTEGDRYLAANPFFHV--------FGYKAGVNAPLMRGATI-LPLPVFDP--DEV 247

Query: 309 MEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE 364
             L    + T+L G P                           +Y   L      +  R 
Sbjct: 248 FRLIETERITVLPGPP--------------------------TMYNSLLQ-----HPDRS 276

Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGA----PLSTEVEEFLRVTCCAFLVQGYGLTET 420
           A  L+ L              RL ++G A     L    E  L V     ++ GYGL+E 
Sbjct: 277 AEDLSSL--------------RLAVTGAASMPVALLERFESELGV---DIVLTGYGLSEA 319

Query: 421 CGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
            G TT    D+    + GT G      E ++  V E+G   +     GE+ VRG  +  G
Sbjct: 320 SGVTTFNRLDDDRKTVAGTIGTAIAGVENKI--VNELG-EEVPVGEVGELLVRGPNVMKG 376

Query: 479 YYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLI 519
           YY +P+ T  +I  DGW HTGD+G++   G + I+DRKK++ 
Sbjct: 377 YYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMF 418

Length = 513

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  156 bits (397), Expect = 4e-41
 Identities = 121/497 (24%), Positives = 190/497 (38%), Gaps = 114/497 (22%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G     TY + Y  V ++ +AL + G +PG RV     N  + +E   A   +  +   L
Sbjct: 21  GSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMGAVLHTL 80

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
              L P  + +I++HAE   +FV D     LL      A RL  +           +M  
Sbjct: 81  NPRLSPEQIAYIINHAEDKVIFV-DDDFLPLLE---AIAPRLPTVKAVVVYDDA--DMPE 134

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFN-ICTIMYTSGTSGDPKGVVLTHETIA--TF 248
            +    Y+++E L   + +     P    N    + YTSGT+G+PKGVV +H ++   T 
Sbjct: 135 TSLPNVYAYEELL--EEESPEYEWPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTL 192

Query: 249 VSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY----------- 297
            S +   L      ++  D  L  +P+ H+               + Y            
Sbjct: 193 ASALPDSLG-----LSESDTVLPVVPMFHVN-----------AWGLPYAATMVGAKLVLP 236

Query: 298 --HGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355
             + D  +L D + E K T+ AGVP +                                W
Sbjct: 237 GRYLDPASLLDLIEEEKVTVSAGVPTI--------------------------------W 264

Query: 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR--VTCCAFLVQ 413
           + +            L         L    R+V+ G A   + +E+     V     ++ 
Sbjct: 265 LGL------------LNYLEANGKDLSSLRRVVVGGSALPRSLIEKLEERGVE----VIH 308

Query: 414 GYGLTETCGPTTVCFPDEMCMVG-----------TAGPVSVYSELRL-----EEVPEMGY 457
            +G+TET    TV       +V              G      ELR+      E+P  G 
Sbjct: 309 AWGMTETSPLGTVSRLKPH-LVDLPEEEKLELRAKQGRPVPGVELRIVDDEGNELPWDGK 367

Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 517
           +       GE+ VRG  +   YYK+P+ T E   DGWF TGD+  I  +G ++I DR K+
Sbjct: 368 TV------GELVVRGPWVTGSYYKDPEKTEELTRDGWFRTGDVAVIDEDGYIQITDRAKD 421

Query: 518 LIKISQGEYVALEYLEN 534
           +IK S GE+++   LEN
Sbjct: 422 VIK-SGGEWISSVELEN 437

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  150 bits (382), Expect = 7e-40
 Identities = 99/367 (26%), Positives = 139/367 (37%), Gaps = 84/367 (22%)

Query: 212 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271
           +  L P      TI++TSG++G PK VV T         G    L      +T DD +L 
Sbjct: 69  LADLQPDLDRPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENL-----GLTPDDNWLL 123

Query: 272 FLPLAH-----ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKI 326
            LPL H     I+ R         GA V     D  A+ + L     T ++ VP      
Sbjct: 124 SLPLFHVSGLAIVMRS----LLAGGALVLPDKFDAEAIAEALENHGVTHISLVP------ 173

Query: 327 HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLR 386
                          +R+ +                  A  L+               LR
Sbjct: 174 ------------TQLQRLLE---------------SLGARWLS--------------SLR 192

Query: 387 LVISGGAPLSTEVEEFLRVTCCAF---LVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVS 442
            V+ GGAP+       L          L   YG+TET     T+   D +  +G+ G   
Sbjct: 193 AVLLGGAPIPPS----LLEQARQRGIPLYPTYGMTETASQVATLKPDDFLAKLGSVGKPL 248

Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQ 502
              ELR+    +           GE+ VRG +LF GY     LT     DGWFHTGD+G 
Sbjct: 249 PGRELRIVNPQD-----------GEILVRGPSLFLGYLPQGGLTPPLDEDGWFHTGDLGY 297

Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAV 559
           +   G + ++ R+ +LI IS GE +  E +E V    P +E+  V G   D      VA 
Sbjct: 298 LDAEGYLYVLGRRDDLI-ISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAF 356

Query: 560 VVPCEED 566
           VVP ++ 
Sbjct: 357 VVPNDDP 363

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  152 bits (387), Expect = 1e-39
 Identities = 104/366 (28%), Positives = 157/366 (42%), Gaps = 85/366 (23%)

Query: 216 PPQPF----NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271
           PP       ++  + Y+SGT+G  KGV+LTH      ++ V   +         +DV L 
Sbjct: 150 PPVVVIKQDDVAALPYSSGTTGRSKGVMLTH---RNLIANVAQLVAGEGPNFDREDVTLC 206

Query: 272 FLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK 331
            LP+ HI                   +G L  +   L+ L  T++  +PR F+       
Sbjct: 207 VLPMFHI-------------------YG-LTVILLALLRLGATVVV-MPR-FD------- 237

Query: 332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGR-----LR 386
             LE+          A+ KYK+  +          P+   +    VK  +  +     L+
Sbjct: 238 --LEKF-------LAAIEKYKVTHL----------PVVPPIVLALVKHPIVDKYDLSSLK 278

Query: 387 LVISGGAPLSTEVEE-FLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVY 444
            + SG APL  E+ E F        L QGYG+TE+   TT+C   E     G+ G +   
Sbjct: 279 QIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVPN 338

Query: 445 SELRLEEVPEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIG 501
            E ++ + PE G S    PP   GE+ VRG  +  GY  NP+ T E+I  DGW HTGD+G
Sbjct: 339 VEAKIVD-PETGES---LPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLG 394

Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI-IEDIWVYGDSLKSMLVAVV 560
               +G + I+DR K LIK     Y         + VAP  +E + +   S   +  A V
Sbjct: 395 YFDEDGYLFIVDRLKELIK-----Y-------KGFQVAPAELEALLL---SHPEIADAAV 439

Query: 561 VPCEED 566
           +P  ++
Sbjct: 440 IPYPDE 445

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  143 bits (362), Expect = 1e-37
 Identities = 93/375 (24%), Positives = 148/375 (39%), Gaps = 89/375 (23%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281
              I YTSGT+G PKG +LTH  +   ++       +    +T  D  L  +PL H+   
Sbjct: 4   PALIQYTSGTTGRPKGAMLTHRNV---LNNGYSIARRL--GLTEGDRTLVPVPLFHV--- 55

Query: 282 VIEEYF---------FRRGASVGYYHGDLNALR--DDLMELKPTLLAGVPRVFEKIHEGI 330
                F            GA++       +       +   + T L GVP +F       
Sbjct: 56  -----FGLVLGVLASLTAGATL-VLMEKFDPGAALRLIERERITALHGVPTMF------- 102

Query: 331 KKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL-ADLLAFRKVKARLGGRLRLVI 389
              +  L       FD      L     G      +P+  +L+  R+++           
Sbjct: 103 ---IALLEHPDFDKFDL---SSLRTGISG-----GAPVPPELV--RRIREEFP------- 142

Query: 390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYSEL 447
                              A +  GYG+TET G  T    D+      GT G      E+
Sbjct: 143 ------------------MAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPGVEV 184

Query: 448 RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPN 506
           ++ + P+ G  P  +   GE+CVRG ++  GYY +P+ T E+I  DGW HTGD+G +  +
Sbjct: 185 KIVD-PDGGEVPPGEV--GEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYMDED 241

Query: 507 GVVKIIDRKKNLIKISQGEYVA-LEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVP 562
           G ++I+ R K++I I  GE +   E +E      P + +  V G   + L  ++ A VV 
Sbjct: 242 GYLRIVGRIKDMI-IRGGENIYPAE-IEEALLTHPAVAEAAVVGVPDERLGEVVAAFVVL 299

Query: 563 ------CEEDTKKWA 571
                  EE+   + 
Sbjct: 300 KPGATLTEEELIAFC 314

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  143 bits (364), Expect = 3e-37
 Identities = 133/503 (26%), Positives = 185/503 (36%), Gaps = 147/503 (29%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+     ++  AL A G  PG RV +      ++V    A      + VPL  +   
Sbjct: 13  TYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSYPA 72

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                    AE+ +  + D +   L+ P          ++ +TS                
Sbjct: 73  ---------AELAY-ILSDSQPSLLVDP---------ALIIYTS---------------- 97

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                                           GT+G PKGVVLTH  +A   +     ++
Sbjct: 98  --------------------------------GTTGRPKGVVLTHGNLA---ANARALVE 122

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 317
            +  + T  DV L  LPL H+                   HG  NAL          L A
Sbjct: 123 AW--RWTASDVLLHALPLHHV-------------------HGLFNALH-------CPLWA 154

Query: 318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN-----MG----YKQREASPL 368
           G    F                L R  FD   +  L  +      MG    Y +     L
Sbjct: 155 GASVEF----------------LPR--FDPQERDALRLLPRITVFMGVPTIYTR-----L 191

Query: 369 ADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVC 427
            +   F    A     LRL +SG A L   V E +   T    L++ YG+TET G     
Sbjct: 192 LEHYEFDDAAAAAARNLRLFVSGSAALPVPVLERWEERT-GHTLLERYGMTET-GMALSN 249

Query: 428 FPDEMCMVGTAG-PV-SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
             D     GT G P+  V  E+R+  V E G  PL     GE+ VRG  +FS Y+  P+ 
Sbjct: 250 PLDGERRPGTVGLPLPGV--EVRI--VDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEA 305

Query: 486 TRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEY--VALEYLENVYCVAPII 542
           T E+   DGWF TGD+G +  +G  +I+ RK + I I  G Y   ALE +E      P +
Sbjct: 306 TAEAFTEDGWFKTGDVGVVDEDGYYRILGRKSDDI-IKSGGYKVSALE-IEEALLEHPGV 363

Query: 543 EDIWVYG---DSLKSMLVAVVVP 562
            ++ V G         +VAVVVP
Sbjct: 364 AEVAVIGVPDPDWGEAVVAVVVP 386

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  136 bits (345), Expect = 2e-35
 Identities = 93/331 (28%), Positives = 137/331 (41%), Gaps = 92/331 (27%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281
              I+YTSGT+G PKGV+LTH  +          +D     ++  DVYL   PL      
Sbjct: 3   PALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVD-----LSPGDVYLLAAPL------ 51

Query: 282 VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR 341
                          YH            L P L AG   V           + +  P  
Sbjct: 52  ---------------YHAAGGLF------LLPALAAGGTVVL----------MPKFDP-- 78

Query: 342 RRIFDALYKYKL-------AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
             + D + ++++                     L  L  F +        LRL+I G AP
Sbjct: 79  EAVLDLIERHRVTHTFLVPTMFQR---------LLRLPDFARYD---LSSLRLIIYGAAP 126

Query: 395 LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYSELRL--- 449
           +  E++  +        VQGYG+TET GPTT     E  +  +G+ G      E+R+   
Sbjct: 127 MPAELKRAMIEWFGPVFVQGYGMTET-GPTTTLLSPEDWLRKLGSVGRPVPGVEVRIVDE 185

Query: 450 --EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP 505
              E+P  E+G          E+ VRG  + +GY+  P+ T E++ DGW HTGD+G +  
Sbjct: 186 DGRELPPGEVG----------EIVVRGPAVMAGYWNRPEATAEALRDGWLHTGDLGYLDE 235

Query: 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
           +G + I+DRKK++I IS G        EN+Y
Sbjct: 236 DGYLYIVDRKKDMI-ISGG--------ENIY 257

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  130 bits (328), Expect = 2e-32
 Identities = 128/511 (25%), Positives = 190/511 (37%), Gaps = 132/511 (25%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E V ++   L+  G   G RV +Y  N PQ+V A  A      + VP+      
Sbjct: 3   TYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNRE 62

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             +  IL+ +                          RV++  + L               
Sbjct: 63  AELEHILNDSG------------------------ARVLIVGSEL--------------- 83

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFL 256
                       +++ ++P          YTSGT+G PKG + TH T +AT  +      
Sbjct: 84  ------------DDVAVIP----------YTSGTTGLPKGCMHTHRTVLATAAASAAWSG 121

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
                 +T D V L+FLPL H+                G     +NA           + 
Sbjct: 122 ------LTPDSVLLAFLPLFHV---------------AGMQGS-MNA----------PIY 149

Query: 317 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL-AWMNMGYKQREASPLADLLAFR 375
            G   V               R  R     A+ +Y++  W N+       + + DLLA  
Sbjct: 150 TGATLVLLT------------RWDREAAARAIERYRVTHWTNI------VTMVVDLLAHP 191

Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
           +        L++V  GGA L   V E L+        +GYGLTET   T    PD     
Sbjct: 192 RFADYDLSSLKVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFNPPDRPKPQ 251

Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---- 491
               PV   ++ R+ + PE G   L     GE+ VRG  +F GY+  P+ T ES I    
Sbjct: 252 CLGIPVF-GTDARVID-PETG-EELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDG 308

Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG-- 549
             +F TGD+G I   G    +DR K +I +S G  V    +E +    P + ++ V G  
Sbjct: 309 KRFFRTGDLGYIDEEGYFFFLDRVKRMINVS-GYKVWPAEVEALLYQHPAVLEVCVIGRP 367

Query: 550 DSLK-SMLVAVVVP--------CEEDTKKWA 571
           D  +  ++ A VV          EED  +W 
Sbjct: 368 DPRRGEVVKAFVVLKPDYRGKVTEEDIIEWC 398

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  128 bits (324), Expect = 6e-32
 Identities = 108/499 (21%), Positives = 173/499 (34%), Gaps = 128/499 (25%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T++++  E   +  AL+A G   G RV + G N  + V  + AC  L      L   L  
Sbjct: 1   TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                 L+  ++  +       ++    D  S  R+            +     +T +  
Sbjct: 61  NERTNQLEDLDVQLLLTDSLLEEKDFQAD--SLDRI------------EAAGRYETSLSA 106

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
               +                   I T+M+TSGT+G PK V  T         G    L 
Sbjct: 107 SFNMD------------------QIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENL- 147

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR---RGASVGYYHGDLNALRDDLMELKPT 314
                 T DD +L  LPL HI    I    FR    GA++       N L + +   + T
Sbjct: 148 ----GFTEDDNWLLSLPLYHISGLSI---LFRWLIEGATL-RIVDKFNQLLEMIANERVT 199

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF 374
            ++ VP                               +L  +                  
Sbjct: 200 HISLVPT------------------------------QLNRL------------------ 211

Query: 375 RKVKARLGG-RLRLVISGGAPLSTEVEEF---LRVTCCAFLVQGYGLTETCGPTTVC-FP 429
             +        LR ++ GG+ +   + E      +     +   YG+TETC  + V    
Sbjct: 212 --LDEGGHNENLRKILLGGSAIPAPLIEEAQQYGLP----IYLSYGMTETC--SQVTTAT 263

Query: 430 DEMCM-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 488
            EM       G      E++++   + G+        GE+ V+G  L  GY    +LT  
Sbjct: 264 PEMLHARPDVGRPLAGREIKIKVDNKEGH--------GEIMVKGANLMKGYLYQGELTPA 315

Query: 489 SIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY 548
               GWF+TGDIG++   G + ++ R+ +LI IS G        EN+Y     IE + +Y
Sbjct: 316 FEQQGWFNTGDIGELDGEGFLYVLGRRDDLI-ISGG--------ENIYPEE--IETV-LY 363

Query: 549 GDSLKSMLVAVVVPCEEDT 567
                 +  AVVVP  +  
Sbjct: 364 --QHPGIQEAVVVPKPDAE 380

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  130 bits (328), Expect = 7e-32
 Identities = 110/543 (20%), Positives = 187/543 (34%), Gaps = 100/543 (18%)

Query: 41  LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEP 100
           LN A +     ++    +       F           TY ++  EV ++ +AL+  G   
Sbjct: 8   LNLALNALDRHLEADRPDDTAII--FDGEDGLFREL-TYGDLRREVARLANALKDLGGVK 64

Query: 101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK 160
           G RV IY  N P+ V A+ A   +  I   +   L   AV   +       +   D    
Sbjct: 65  GDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADD---- 120

Query: 161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF 220
                   + +  + +              V        +DE +        E    +P 
Sbjct: 121 -------GTFRNGKEIA-LLEDADAVLSSVVVVPRLGLWYDEAVE----KASEKFEFEPL 168

Query: 221 N---ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
                  ++YTSGT+G PKG+V +H                 +      D + +      
Sbjct: 169 PADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLT--AKFHGDLLP--GDRFWNSSDPGW 224

Query: 278 ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
           I                G ++   + L            +G   V    ++G      E 
Sbjct: 225 I---------------YGLWYSVFSPL-----------ASGATTVL---YDGRPFYSPE- 254

Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASP--LADLLAFRKVKARLGGRLRLVISGGAPL 395
                R+++AL KYK+            SP  L  L+     +      LR++ S G PL
Sbjct: 255 -----RLWEALEKYKVT-------IFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPL 302

Query: 396 STEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPE 454
           + E  E F       +++  YG TET        P      G++G            +P 
Sbjct: 303 NPEAFEWFYSALGV-WILDIYGQTETGMGFIAGRPP--VKNGSSG------------LPL 347

Query: 455 MGYSP--LDD--PPC----GEVCVRGKT--LFSGYYKNPDLTRESIIDGWFHTGDIGQIL 504
            GY+   +DD   P     GE+ VR     +   Y+ +P+  +E+    W+ TGD  +  
Sbjct: 348 PGYAVRRVDDEGNPVPPGVGELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERD 407

Query: 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLK-SMLVAVVV 561
            +G   +  R  ++IK+S G+ +    +E+V    P + +  V G  D  K  +++A VV
Sbjct: 408 EDGYFWLHGRSDDVIKVS-GKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVV 466

Query: 562 PCE 564
              
Sbjct: 467 LAA 469

Length = 528

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  129 bits (325), Expect = 1e-31
 Identities = 124/481 (25%), Positives = 193/481 (40%), Gaps = 92/481 (19%)

Query: 78  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           TYK+++E V ++ + L      + G R+ I   N  +++  + A   +  I VPL   L 
Sbjct: 29  TYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLT 88

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
              + F L  +    +FV+       LS    S   ++ ++  TSL   + E        
Sbjct: 89  ENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSY--VQRVISITSLK--EIEDRKIDNFV 144

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
             +                    F IC   YTSGT+G PKG VLT E +  F + ++   
Sbjct: 145 EKNESA----------------SFIIC---YTSGTTGKPKGAVLTQENM--FWNALN--- 180

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
           + F   +T+ D  +  LPL HI                    G +      L    PTL 
Sbjct: 181 NTFAIDLTMHDRSIVLLPLFHI--------------------GGIG-----LFAF-PTLF 214

Query: 317 AG----VPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372
           AG    VPR FE       KAL  +   +  +   +     A +N            +  
Sbjct: 215 AGGVIIVPRKFEP-----TKALSMIEKHKVTVVMGVPTIHQALIN--------CSKFETT 261

Query: 373 AFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLV-QGYGLTETCGPTTVCFPD 430
             + V        R   +GGAP   E + EF+      FL  QG+G+TET  PT     +
Sbjct: 262 NLQSV--------RWFYNGGAPCPEELMREFIDR---GFLFGQGFGMTET-SPTVFMLSE 309

Query: 431 EMCM--VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 488
           E     VG+ G   ++ +  L +        + +   GE+ +RG  +   Y+  PD T E
Sbjct: 310 EDARRKVGSIGKPVLFCDYELID-ENKNKVEVGE--VGELLIRGPNVMKEYWNRPDATEE 366

Query: 489 SIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY 548
           +I DGW  TGD+ ++  +G V I+ RKK +I IS GE +    +E V      + ++ V 
Sbjct: 367 TIQDGWLCTGDLARVDEDGFVYIVGRKKEMI-ISGGENIYPLEVEQVINKLSDVYEVAVV 425

Query: 549 G 549
           G
Sbjct: 426 G 426

Length = 496

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  130 bits (328), Expect = 1e-31
 Identities = 155/588 (26%), Positives = 235/588 (39%), Gaps = 126/588 (21%)

Query: 35  PSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR 94
             +D    T  D++  +V ++        RP +D  FG     TY E+ ++V +  + LR
Sbjct: 25  HDLDYGDTTLVDLYDNAVARFGD------RPALD-FFGATT--TYAELGKQVRRAAAGLR 75

Query: 95  ASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYDT---LGPGAVNFILDH-A 147
           A G  PG RV I   NCPQ + A  A   L  + V   PLY       P       DH A
Sbjct: 76  ALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFE-----DHGA 130

Query: 148 EIDFVF----------VQDKKVKELLSPDCRSA----QRLRVMVCFTSLTAEQKEMAVQT 193
            +  V+           +   ++ ++S +  +A    QRL + +   +L   +  +   T
Sbjct: 131 RVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAAL---T 187

Query: 194 GIKP--YSWDEFLHLGKVNEMEILP---PQPFNICTIMYTSGTSGDPKGVVLTHETI-AT 247
           G  P    W+  +      +   +    P P ++  I+YTSGT+G PKG  LTH  + A 
Sbjct: 188 GPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFAN 247

Query: 248 FVSG---VDLFLDQFEDKMTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLN 302
              G   V    D         +  L+ LP+ H   L   +       G  V     D++
Sbjct: 248 AAQGKAWVPGLGDG-------PERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDID 300

Query: 303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ 362
            + D + +  PT L GVP ++EKI    + A E    L                      
Sbjct: 301 LILDAMKKHPPTWLPGVPPLYEKI---AEAAEERGVDLSG-------------------- 337

Query: 363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETC 421
                                 +R   SG   L    VE + ++T    LV+GYGLTET 
Sbjct: 338 ----------------------VRNAFSGAMALPVSTVELWEKLTG-GLLVEGYGLTET- 373

Query: 422 GPTTVCFPDEMCMVGT---AGPVSV---YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 475
            P  V  P     +      G V V    +E+R+ + PE     + D   GE+ VRG  +
Sbjct: 374 SPIIVGNP-----MSDDRRPGYVGVPFPDTEVRIVD-PEDPDETMPDGEEGELLVRGPQV 427

Query: 476 FSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
           F GY+  P+ T +S +DGWF TGD+  +  +G ++I+DR K LI I+ G  V    +E V
Sbjct: 428 FKGYWNRPEETAKSFLDGWFRTGDVVVMEEDGFIRIVDRIKELI-ITGGFNVYPAEVEEV 486

Query: 536 YCVAPIIEDIWVYG---DSLKSMLVAVVVPC------EEDTKKWAYSN 574
               P +ED  V G   +     +VA VV         E  + +   +
Sbjct: 487 LREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDPEGLRAYCREH 534

Length = 573

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  125 bits (316), Expect = 7e-31
 Identities = 95/371 (25%), Positives = 133/371 (35%), Gaps = 98/371 (26%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281
              I+YTSGT+G PKGV+LTH   A  +    L        +  DDV L+ LPL HI   
Sbjct: 83  TAAILYTSGTTGPPKGVLLTH---AQLLFAARLAARLLG--LRPDDVLLTPLPLFHI--- 134

Query: 282 VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR 341
                               NA       +   LL G   V           L       
Sbjct: 135 --------------------NAQ---AYSVYAALLVGATLVL----------LPRFSA-- 159

Query: 342 RRIFDALYKYKLAW-------MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
            R +D + K+             +  KQ  +    D              LR V     P
Sbjct: 160 SRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDDRD------------HPLRFVFGAPLP 207

Query: 395 LSTEVEEFLRVTCCAF---LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL-- 449
            +     F       F   LV+GYG+TET  P     P +    G+ G      E+R+  
Sbjct: 208 -AAIWPAFEE----RFGVKLVEGYGMTETGVPIIA--PGDPAPPGSCGRPRPGVEVRIVD 260

Query: 450 ---EEVPEMGYSPLDDPPCGEVCVR---GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI 503
               EVP            GE+ VR      +F GYY  P+ T ++  +GWFHTGD G+ 
Sbjct: 261 EDGREVP-------PGEV-GELVVRPRRPWAMFKGYYGMPEATAKAWRNGWFHTGDRGRR 312

Query: 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS-------ML 556
             +G +  +DRKK+ I+   GE ++   +E      P + +  V    + S         
Sbjct: 313 DEDGFLYFVDRKKDAIRRR-GENISSYEVEAAILAHPAVAEAAVVA--VPSELGEDEVKA 369

Query: 557 VAVVVPCEEDT 567
           V V+ P E   
Sbjct: 370 VVVLRPGETLD 380

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score =  116 bits (293), Expect = 2e-27
 Identities = 132/513 (25%), Positives = 200/513 (38%), Gaps = 114/513 (22%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T++E+ + V  +  AL   G   G RV I   N  ++VE++ A N L  I VP+   L P
Sbjct: 44  TWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTP 103

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + F++       V  +       ++   R    L   V     +++            
Sbjct: 104 PEIAFLVSDCGAHVVVTEA--ALAPVATAVRDIVPLLSTVVVAGGSSD------------ 149

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNI-----CTIMYTSGTSGDPKGVVLTHETIAT----- 247
              D  L    +         P +I       IMYTSGT+G PKG VLTH  +       
Sbjct: 150 ---DSVLGYEDLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTC 206

Query: 248 -FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD 306
              +G D             DV    +PL HI             A +G           
Sbjct: 207 LRTNGAD----------INSDVGFVGVPLFHI-------------AGIG----------- 232

Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
               + P LL G P V   I+      L    P   ++ D L   K+  + +   Q +A 
Sbjct: 233 ---SMLPGLLLGAPTV---IY-----PLGAFDP--GQLLDVLEAEKVTGIFLVPAQWQA- 278

Query: 367 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF----LVQGYGLTETCG 422
               + A ++ + R    LR++  G AP S  +   LR     F    ++  +G TE   
Sbjct: 279 ----VCAEQQARPR-DLALRVLSWGAAPASDTL---LRQMAATFPEAQILAAFGQTEM-S 329

Query: 423 PTTVCF---PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDD-----PP--CGEVCVRG 472
           P T C     D +  +G+ G V          +P +    +D+     P    GE+  R 
Sbjct: 330 PVT-CMLLGEDAIRKLGSVGKV----------IPTVAARVVDENMNDVPVGEVGEIVYRA 378

Query: 473 KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYL 532
            TL SGY+ NP+ T E+   GWFH+GD+ +    G V ++DRKK++I IS GE +    +
Sbjct: 379 PTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDEEGYVWVVDRKKDMI-ISGGENIYCAEV 437

Query: 533 ENVYCVAPIIEDIWVYG---DSLKSMLVAVVVP 562
           ENV    P I ++ V G   +    + VAV   
Sbjct: 438 ENVLASHPDIVEVAVIGRADEKWGEVPVAVAAV 470

Length = 542

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  114 bits (288), Expect = 8e-27
 Identities = 141/547 (25%), Positives = 205/547 (37%), Gaps = 124/547 (22%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T++++ + V ++   L A G +PG RVGI+  NC +W+    A   +  I V +      
Sbjct: 47  TWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRA 106

Query: 138 GAVNFILDHAEIDFVFVQDK--------KVKELLSPDCRSAQ----------RLRVMVCF 179
             + + L  + + +V   D          ++ELL P     Q           LR +V  
Sbjct: 107 SELEYALGQSGVRWVICADAFKTSDYHAMLQELL-PGLAEGQPGALACERLPELRGVVSL 165

Query: 180 TSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEIL--------PPQPFNICTIMYTSGT 231
               A               W E    G+    E L           P NI    YTSGT
Sbjct: 166 AP--APPPGFLA--------WHELQARGETVSREALAERQASLDRDDPINI---QYTSGT 212

Query: 232 SGDPKGVVLTHETIAT--FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF-F 288
           +G PKG  L+H  I    +     L L +  D++ V       +PL H    V+      
Sbjct: 213 TGFPKGATLSHHNILNNGYFVAESLGLTE-HDRLCVP------VPLYHCFGMVLANLGCM 265

Query: 289 RRGASVGY--YHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346
             GA + Y     D  A    + E + T L GVP +F          + EL   +R  FD
Sbjct: 266 TVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMF----------IAELDHPQRGNFD 315

Query: 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT 406
                                                 LR  I  GAP   EV    RV 
Sbjct: 316 L-----------------------------------SSLRTGIMAGAPCPIEVMR--RVM 338

Query: 407 C---CAFLVQGYGLTETCGPTTVCFPDEMC--MVGTAGPVSVYSELRLEEVPEMGYSPLD 461
                A +   YG+TET   +      +     V T G    + E+++ + P+    P  
Sbjct: 339 DEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PDGATVPRG 397

Query: 462 DPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
           +   GE+C RG ++  GY+ NP+ T ESI  DGW HTGD+  +   G V+I+ R K++I 
Sbjct: 398 E--IGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMI- 454

Query: 521 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCE---EDTKKWA-YSNGH 576
           I  GE +    +E      P + D+ V+G           VP E   E+   W     GH
Sbjct: 455 IRGGENIYPREIEEFLFTHPAVADVQVFG-----------VPDEKYGEEIVAWVRLHPGH 503

Query: 577 AGSFLEL 583
           A S  EL
Sbjct: 504 AASEEEL 510

Length = 558

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  109 bits (275), Expect = 4e-26
 Identities = 96/363 (26%), Positives = 143/363 (39%), Gaps = 85/363 (23%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I++TSGT+G PKGV LTH+ +      +         K+T  D  L+ +PL HI      
Sbjct: 7   ILHTSGTTGRPKGVPLTHKNLLASARNI-----AKSHKLTPSDRCLNVMPLFHI------ 55

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG----VPRVFEKIHEGIKKALEELRPL 340
                        HG + +L         TLLAG     P  F                 
Sbjct: 56  -------------HGLIVSLL-------ATLLAGGSVVCPPKFSA--------------- 80

Query: 341 RRRIFDALYKYKLAWMNMGYKQREASP--LADLLAFRKVKARLG-GRLRLVISGGAPLST 397
             + +D + KY++ W +       A P     LL   K        RLR + S  APL  
Sbjct: 81  -SKFWDDIAKYRVTWYS-------AVPTIHQILLKTAKPNPGKPPPRLRFIRSASAPLPP 132

Query: 398 EV----EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYSELRLEE 451
            V    E+   V     +++ YG+TE         P    +   G+ G  +        E
Sbjct: 133 AVLDRLEKRFGVP----VLEAYGMTEAAHQIA-SNPLPPLVRKPGSVGRPAG------VE 181

Query: 452 VPEMG--YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV 509
           V  +     PL     GE+ +RG  + +GY  NP+  RE+  DGWF TGD+G +  +G +
Sbjct: 182 VAILDDDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFRDGWFRTGDLGYLDEDGYL 241

Query: 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEED 566
            +  R K LI    GE ++   +E V    P + +  V+G   +     + A VV    D
Sbjct: 242 FLTGRIKELINRG-GEKISPREVEEVLLRHPAVAEAVVFGVPDELYGEEVAAAVVL-RAD 299

Query: 567 TKK 569
           +K 
Sbjct: 300 SKV 302

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score =  110 bits (278), Expect = 4e-26
 Identities = 110/477 (23%), Positives = 165/477 (34%), Gaps = 126/477 (26%)

Query: 78  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           TY+E+ E   ++   LRA+ G  PG RV +      + V A+ A        VPL D   
Sbjct: 1   TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPL-DPAY 59

Query: 137 PGA-VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195
           P   + FIL+ A    +         L          L   +   +L             
Sbjct: 60  PAERLAFILEDAGARLLLTDSALASRL--AGLVLPVILLDPLELAALDDAPAPPPPDA-- 115

Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
                               P  P ++  ++YTSG++G PKGVV+TH ++   ++ +   
Sbjct: 116 --------------------PSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARR 155

Query: 256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
                  +  DD  L F  L+   D           ASV               E+   L
Sbjct: 156 YG-----LDPDDRVLQFASLSF--D-----------ASV--------------EEIFGAL 183

Query: 316 LAG-----VPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP-LA 369
           LAG      P              +E R     +   + ++ +  +N        +P L 
Sbjct: 184 LAGATLVVPPE-------------DEERDDAALLAALIAEHPVTVLN-------LTPSLL 223

Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCF 428
            LLA     A     LRLVI GG  L+   V+ +      A L+  YG TET   T    
Sbjct: 224 ALLAAALPPALAS--LRLVILGGEALTPALVDRWRARGPGARLINLYGPTET---TVWS- 277

Query: 429 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC---------------GEVCVRGK 473
                   TA  V      R   VP +G  PL +                  GE+ + G 
Sbjct: 278 --------TATLVDPDDAPRESPVP-IGR-PLANTRLYVLDDDLRPVPVGVVGELYIGGP 327

Query: 474 TLFSGYYKNPDLTRESIIDGWF---------HTGDIGQILPNGVVKIIDRKKNLIKI 521
            +  GY   P+LT E  +   F          TGD+ + LP+G ++ + R  + +KI
Sbjct: 328 GVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI 384

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  108 bits (273), Expect = 7e-25
 Identities = 114/365 (31%), Positives = 157/365 (43%), Gaps = 104/365 (28%)

Query: 227 YTSGTSGDPKGVVLTHETIATFVSG-VD-----LFLDQFEDKMTVDDVYLSFLPLAHI-- 278
           Y+SGT+G PKGV+LTH+ + T V+  VD     L+          DDV L  LP+ HI  
Sbjct: 186 YSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY-------FHSDDVILCVLPMFHIYS 238

Query: 279 LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFE--KIHEGIKKALEE 336
           L+ V+                 L  LR     +   +L  +   FE   + E I++    
Sbjct: 239 LNSVL-----------------LCGLR-----VGAAIL--IMPKFEIGALLELIQRHKVT 274

Query: 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLA---DLLAFRKVKARLGGRLRLVISGGA 393
           + P    I  A+ K               SP+    DL + R V            SG A
Sbjct: 275 IAPFVPPIVLAIAK---------------SPVVEKYDLSSIRMVL-----------SGAA 308

Query: 394 PLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMV----------GTAGPVS 442
           PL  E+E+  R     A L QGYG+TE  GP        MC+           G+ G V 
Sbjct: 309 PLGKELEDAFRAKLPNAVLGQGYGMTEA-GPVL-----AMCLAFAKEPFPVKSGSCGTVV 362

Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG 501
             +EL++ + PE G S L     GE+C+RG  +  GY  +P+ T  +I  DGW HTGDIG
Sbjct: 363 RNAELKIVD-PETGAS-LPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIG 420

Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVV 561
            I  +  + I+DR K LIK  +G  VA   LE +    P I D             A VV
Sbjct: 421 YIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLISHPSIAD-------------AAVV 466

Query: 562 PCEED 566
           P +++
Sbjct: 467 PMKDE 471

Length = 537

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score =  108 bits (271), Expect = 1e-24
 Identities = 122/511 (23%), Positives = 197/511 (38%), Gaps = 107/511 (20%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G   +++Y E+ EE  +I++ LRA G +PG  V +       +V A  AC     + VP+
Sbjct: 35  GSEEFQSYAELLEEAERILAGLRALGLKPGDSVILQLERNEDFVTAFWACVLGGFVPVPV 94

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMA 190
                         + E +    + + + ELL SP   +   L   +      A  + + 
Sbjct: 95  ----AVPPT-----YDEPNAAVAKLRNIWELLGSPVILTDAALVAALAGLRTRAGLEALR 145

Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS 250
           V    +  S      L         P +P +   ++ TSG++G PK VVLTH  I     
Sbjct: 146 VLAIEELRSAPPDAPL--------HPARPDDPALLLLTSGSTGVPKCVVLTHRNI----- 192

Query: 251 GVDLFLDQFEDKMTV-----DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR 305
                L +    + V     DDV L+++PL H+               +   H     LR
Sbjct: 193 -----LARSAGTVQVNGFTPDDVSLNWMPLDHV-------------GGIVMLH-----LR 229

Query: 306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA--WM-NMGYKQ 362
           D            V    ++IH      L +  PLR    D + +Y++   W  N  +  
Sbjct: 230 D------------VYLGCQQIHVPTDYILAD--PLR--WLDLIDRYRVTITWAPNFAFAL 273

Query: 363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTC-----CAFLVQGYG 416
                L D L   + ++     LR +I+ G  +  +    FL +          +   +G
Sbjct: 274 -----LNDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFG 328

Query: 417 LTETCGPTTVC--FPDEMCMVGTA-----GPVSVYSELRLEEVP--EMGY---------- 457
           ++ETC   T    F       G       GP+   +    E V   E+G           
Sbjct: 329 MSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIV 388

Query: 458 ----SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKII 512
               + L +   G + VRG T+ SGYY+NP+   E+   DGWF TGD+G +  +G + I 
Sbjct: 389 DEDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFL-HDGRLTIT 447

Query: 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIE 543
            R+K++I I+   Y   E +E      P +E
Sbjct: 448 GREKDMIIINGVNYYNHE-IEAAVEQVPGVE 477

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score =  104 bits (262), Expect = 1e-23
 Identities = 110/370 (29%), Positives = 142/370 (38%), Gaps = 90/370 (24%)

Query: 217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276
           P P     I+YTSGT+G PKGVVL+   IA     +D   + ++   T DDV +  LPL 
Sbjct: 125 PDPDAPALIVYTSGTTGPPKGVVLSRRAIAA---DLDALAEAWQ--WTADDVLVHGLPLF 179

Query: 277 HILDRVIEEY-FFRRGASV---------GYYHGDLNALRDDLMELKPTLLAGVPRVFEKI 326
           H+   V+      R G             Y            +    TL  GVP V+ +I
Sbjct: 180 HVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQA---------LSEGGTLYFGVPTVWSRI 230

Query: 327 HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLR 386
                   E  R LR                                     ARL     
Sbjct: 231 AA----DPEAARALRG------------------------------------ARL----- 245

Query: 387 LVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSE 446
           LV SG A L   V + L        V+ YG+TET   T     D     G  G      E
Sbjct: 246 LV-SGSAALPVPVFDRLAALTGHRPVERYGMTETL-ITLSTRADGERRPGWVGLPLAGVE 303

Query: 447 LRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQIL 504
            RL  V E G   P D    GE+ VRG TLF GY   PD T  +   DGWF TGD+  + 
Sbjct: 304 TRL--VDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVD 361

Query: 505 PNGVVKIIDRKK-NLIK-----ISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSM 555
           P+G+ +I+ R+  +LIK     I  GE      +E      P + +  V G   D L   
Sbjct: 362 PDGMHRIVGRESTDLIKSGGYRIGAGE------IETALLGHPGVREAAVVGVPDDDLGQR 415

Query: 556 LVAVVVPCEE 565
           +VA VV  ++
Sbjct: 416 IVAYVVGADD 425

Length = 471

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  103 bits (258), Expect = 4e-23
 Identities = 72/214 (33%), Positives = 103/214 (48%), Gaps = 38/214 (17%)

Query: 343 RIFDALYKYKLAWMNMGYKQREASP-----LADLLAFRKVKARLGGRLRLVISGGAPLST 397
            I+D + K+K+  +         +P     LA+  A    K  L   +R V++ GAP   
Sbjct: 246 AIYDLIEKHKVTHLC-------GAPTVLNMLAN--APEADKLPLPRPVR-VMTAGAPPPP 295

Query: 398 EVEEFLRVTCCAF-LVQGYGLTETCGPTTVCFP-DEMCMVGTAGPVSVYSELR------- 448
            V    ++    F +   YGLTET GP TVC    E      A P    + L+       
Sbjct: 296 AV--IKKMEELGFEVTHVYGLTETYGPITVCEWKPEW----DALPAEERARLKARQGVRY 349

Query: 449 --LEEV----PEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG 501
             LEEV    PE     P D    GE+ +RG T+  GYYKNP+ T E+   GWFH+GD+ 
Sbjct: 350 VGLEEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAFAGGWFHSGDLA 409

Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
            + P+G ++I DR K++I IS GE ++   +E V
Sbjct: 410 VVHPDGYIEIKDRSKDII-ISGGENISSIEVEGV 442

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score =  100 bits (249), Expect = 5e-22
 Identities = 102/342 (29%), Positives = 150/342 (43%), Gaps = 67/342 (19%)

Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY--LSFLPLA 276
           P ++  + YT GT+G PKG +LTH  + + VS  D++      + T  DV   +  LPL 
Sbjct: 191 PDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVW--GKPSRATRGDVERVICVLPLF 248

Query: 277 HILD-RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
           HI    VI     RRG  +  +   D+ A+  D+ E + T+  GVP ++         AL
Sbjct: 249 HIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMW--------IAL 300

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
                L +R   +L                              A +G       SGGAP
Sbjct: 301 ANDPSLEKRDLSSL------------------------------ATIG-------SGGAP 323

Query: 395 LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPE 454
           L  EV  F        L  G+G+TETC P T   P+     G   P S+   L L  + E
Sbjct: 324 LPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPE-----GPDKPGSI--GLMLPGI-E 375

Query: 455 MGYSPLDDP----PCGEVC---VRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG 507
           +    LDDP    P GEV    +RG  +  GY+  P+ + E+ +   F TGDIG +  +G
Sbjct: 376 LDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDG 435

Query: 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
              ++DRKK++I IS G  V  + +E      P ++++ V G
Sbjct: 436 YFFLVDRKKDMI-ISGGFNVYPQMIEQAIYEHPGVQEVIVIG 476

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 99.7 bits (249), Expect = 6e-22
 Identities = 132/503 (26%), Positives = 198/503 (39%), Gaps = 87/503 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+   V ++   L   G   G  V     N  ++     AC+ +  +  PL      
Sbjct: 57  TYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRE 116

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             ++F+L HAE   V V  K  +         A+RLR            + + V  G   
Sbjct: 117 RELSFMLKHAESK-VLVVPKTFRGFDHA--AMARRLR------PELPALRHVVVVGGDGA 167

Query: 198 YSWDEFLHLGKVNEME-----ILP---PQPFNICTIMYTSGTSGDPKGVVLTHET----I 245
            S++  L +    E E     IL    P P ++  ++YTSGT+G+PKGV+ T  T    I
Sbjct: 168 DSFEALL-ITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANI 226

Query: 246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR 305
             +   + L           DDV L   P+AH                 G+ +G      
Sbjct: 227 VPYAERLGL---------GADDVILMASPMAHQ---------------TGFMYG------ 256

Query: 306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA 365
              + + P +L G   V + I +   +A E +R              + +  M      +
Sbjct: 257 ---LMM-PVML-GATAVLQDIWD-PARAAELIRTEG-----------VTFT-MA-----S 293

Query: 366 SP-LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPT 424
           +P L DL    K   R    LR  +  GAP+   + E  R    A +V  +G+TE    T
Sbjct: 294 TPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVT 353

Query: 425 TVCF--PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 482
                 PDE     T G      E+R   V +   +PL     G + VRG + F GY K 
Sbjct: 354 LTKLDDPDER-ASTTDGCPLPGVEVR---VVDADGAPLPAGQIGRLQVRGCSNFGGYLKR 409

Query: 483 PDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
           P L      DGWF TGD+ +I  +G ++I  R K++I I  GE + +  +E +    P I
Sbjct: 410 PQLNGTDA-DGWFDTGDLARIDADGYIRISGRSKDVI-IRGGENIPVVEIEALLYRHPAI 467

Query: 543 EDIWV--YGDS-LKSMLVAVVVP 562
             + +  Y D  L     A VVP
Sbjct: 468 AQVAIVAYPDERLGERACAFVVP 490

Length = 547

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 98.2 bits (244), Expect = 2e-21
 Identities = 134/514 (26%), Positives = 207/514 (40%), Gaps = 82/514 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYD- 133
           T+   +++V +  + L+  G E G RV I   NCPQ V           I V   PLY  
Sbjct: 51  TFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTE 110

Query: 134 -----TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS------L 182
                 L       IL    +D VF +   V+     +     R+   + F        +
Sbjct: 111 RELEYQLHDSGAKVILC---LDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFV 167

Query: 183 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI-----LPPQPFN-ICTIMYTSGTSGDPK 236
             +Q  + V+      S  E +HL    E E+     +P  P N +  + YT GT+G PK
Sbjct: 168 QKKQSNLVVKV-----SESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPK 222

Query: 237 GVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGY 296
           GV+LTH+ +   VS   + +    +    ++V L  LP  H+                  
Sbjct: 223 GVMLTHKNL---VSNTLMGVQWLYNCKEGEEVVLGVLPFFHV------------------ 261

Query: 297 YHGDLNALRDDLMELKPTLLAGVPRV-FEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355
            +G    +   +M+    +L  +P+   + + E IKK    L P    I+ AL       
Sbjct: 262 -YGMTAVMNLSIMQGYKMVL--IPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLN----- 313

Query: 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGY 415
                     SPL        +K      +R  ISG APL  EV+E         LV+GY
Sbjct: 314 ----------SPL--------LKEYDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGY 355

Query: 416 GLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 475
           GLTE+   T   F  E  + G+ G     +E  +  + E G   L     GE+ V+G  +
Sbjct: 356 GLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSL-ETG-EALPPGEIGEIVVKGPQI 413

Query: 476 FSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
             GY+  P+ T   + DGW HTGD+G +  +G   + DRKK++I ++ G  V    +E V
Sbjct: 414 MKGYWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVKDRKKDMI-VASGFNVYPREVEEV 472

Query: 536 YCVAPIIEDIWVYG--DSLKSMLVAVVVPCEEDT 567
                 ++++   G  D  +   V   V  +E T
Sbjct: 473 LYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGT 506

Length = 563

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 97.8 bits (244), Expect = 2e-21
 Identities = 92/313 (29%), Positives = 139/313 (44%), Gaps = 54/313 (17%)

Query: 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD--VYLSFL 273
              P ++  + YT GT+G  KG  L H  I   V  ++ +L    +K    D   ++  L
Sbjct: 200 KLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCAL 259

Query: 274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 333
           PL HI    +          +G   G  N            +L   PR        I   
Sbjct: 260 PLYHIFALTV-------CGLLGMRTGGRN------------ILIPNPR-------DIPGF 293

Query: 334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
           ++EL+  +  IF A+     A +N        +P  D L F K+    GG       G A
Sbjct: 294 IKELKKYQVHIFPAVNTLYNALLN--------NPDFDKLDFSKLIVANGG-------GMA 338

Query: 394 PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-DEMCMVGTAG-PV-SVYSELRLE 450
                 E +L +T C  + +GYGL+ET  P   C P D     GT G P+ S    +R +
Sbjct: 339 VQRPVAERWLEMTGCP-ITEGYGLSET-SPVATCNPVDATEFSGTIGLPLPSTEVSIRDD 396

Query: 451 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVV 509
           +  ++   PL +P  GE+C+RG  + +GY+  PD T + +  DG+F TGD+G +   G  
Sbjct: 397 DGNDL---PLGEP--GEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYT 451

Query: 510 KIIDRKKNLIKIS 522
           KI+DRKK++I +S
Sbjct: 452 KIVDRKKDMILVS 464

Length = 557

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 96.4 bits (240), Expect = 8e-21
 Identities = 98/329 (29%), Positives = 145/329 (44%), Gaps = 58/329 (17%)

Query: 217 PQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275
           PQ  ++  + YT GT+G  KG +LTH   +A  +    L      +     ++ ++ LPL
Sbjct: 204 PQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGC---EILIAPLPL 260

Query: 276 AHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE 335
            HI       Y F          G+ N L  +            PR    +       ++
Sbjct: 261 YHI-------YAFTFHCMAMMLIGNHNILISN------------PRDLPAM-------VK 294

Query: 336 ELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL 395
           EL   +   F  L    +A  N      EA        FRK+       L+L +SGG  L
Sbjct: 295 ELGKWKFSGFVGLNTLFVALCN-----NEA--------FRKLDF---SALKLTLSGGMAL 338

Query: 396 STEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PV-SVYSELRLEEV 452
                E +  VT CA   +GYG+TET  P     P +   VGT G PV S   ++  ++ 
Sbjct: 339 QLATAERWKEVTGCAIC-EGYGMTET-SPVVSVNPSQAIQVGTIGIPVPSTLCKVIDDDG 396

Query: 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511
            E+   PL +   GE+CV+G  +  GY++ P+ T E +  DGW  TGDI  I  +G ++I
Sbjct: 397 NEL---PLGEV--GELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRI 451

Query: 512 IDRKKNLIKISQGEYVALEYLENVYCVAP 540
           +DRKK++I +S G  V    LE+V    P
Sbjct: 452 VDRKKDMILVS-GFNVYPNELEDVLAALP 479

Length = 562

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 95.3 bits (238), Expect = 8e-21
 Identities = 87/366 (23%), Positives = 144/366 (39%), Gaps = 76/366 (20%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I++TSG++G PKGV ++H  +A+F+  +    D     +T  DV+ +  P          
Sbjct: 102 ILFTSGSTGKPKGVQISHANLASFLDWMVEDFD-----LTEGDVFSNQAPF--------- 147

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG-----VPRVFEKIHEGIKKALEELRP 339
             F            DL+     + +L P L +G     +P+      E I   L     
Sbjct: 148 -SF------------DLS-----VFDLFPALASGATLYVIPK------EQIADPLA---- 179

Query: 340 LRRRIFDALYKYKLA-WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
               +F+ L ++ L  W+++       S  + LL  R++       LR  +  G  L  +
Sbjct: 180 ----LFEFLKEHGLTVWVSV------PSFASLLLLSRELNPESLPSLRTFLFCGEVLPKK 229

Query: 399 -VEEFLRVTCCAFLVQGYGLTETCGPTT-VCFPDEMCMVGTAGPV---SVYSELRLEEVP 453
             +   R    A ++  YG TE     T      E   +    P+        LR   + 
Sbjct: 230 LAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEP--LSRNEPLPIGYPKPGLRALILD 287

Query: 454 EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID----GWFHTGDIGQILPNGVV 509
           E G  P+     GE+ + G  +  GY  NP+ T ++        W+ TGD+  +  +G++
Sbjct: 288 EDG-RPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDLVYLEDDGLL 346

Query: 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED---IWVYGDSLKSMLVAVVVPCE-- 564
             + RK   IK+  G  + LE +E      P +E+   + V        LVA VV  E  
Sbjct: 347 VYLGRKDFQIKL-HGYRIELEEIEAALRALPGVEEAVVLPVPKGEKVVRLVAFVVGKEGA 405

Query: 565 EDTKKW 570
            DTK  
Sbjct: 406 LDTKAL 411

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 94.4 bits (235), Expect = 3e-20
 Identities = 126/524 (24%), Positives = 189/524 (36%), Gaps = 95/524 (18%)

Query: 59  RMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118
                RP +   FG   W TY E          AL A+G + G RV +   N  ++++  
Sbjct: 32  ERYPDRPLL--VFGGTRW-TYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVF 88

Query: 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVC 178
             C  L  I VP+   L    +  IL ++    + V+   +  L + D        V   
Sbjct: 89  LGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVW-- 146

Query: 179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPP---QPFNICTIMYTSGTSGDP 235
              L      ++V  G   +S      L         P    QP +   I+YTSGT+G  
Sbjct: 147 ---LLDAPASVSVPAG---WSTAPLPPLD-----APAPAAAVQPGDTAAILYTSGTTGPS 195

Query: 236 KGVVLTHETIATFV-----SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR 290
           KGV   H   A F      S  DL +         DDV  + LPL H             
Sbjct: 196 KGVCCPH---AQFYWWGRNSAEDLEI-------GADDVLYTTLPLFHT------------ 233

Query: 291 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 350
                      NAL          LLAG   V E             R      + A+ +
Sbjct: 234 -----------NALN----AFFQALLAGATYVLEP------------RFSASGFWPAVRR 266

Query: 351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF 410
           +      + Y       +  LL+    ++    R+R+ +  G P +     F R      
Sbjct: 267 HG---ATVTYLLGAMVSI--LLSQPARESDRAHRVRVALGPGVP-AALHAAF-RERFGVD 319

Query: 411 LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCV 470
           L+ GYG TET     V    +    G+ G ++   E R+  V E     L D   GE+ +
Sbjct: 320 LLDGYGSTETNFVIAVTHGSQ--RPGSMGRLAPGFEARV--VDEHD-QELPDGEPGELLL 374

Query: 471 RGKTLF---SGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV 527
           R    F   +GY+  P+ T E+  + WFHTGD      +G  + +DR K+ I+  +GE +
Sbjct: 375 RADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRFVDRIKDAIR-RRGENI 433

Query: 528 ALEYLENVYCVAPIIEDIWVYGDSLKSML----VAVVVPCEEDT 567
           +   +E V    P +    V+   + S L    V   V   + T
Sbjct: 434 SSFEVEQVLLSHPAVAAAAVF--PVPSELGEDEVMAAVVLRDGT 475

Length = 542

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 94.0 bits (234), Expect = 4e-20
 Identities = 93/364 (25%), Positives = 142/364 (39%), Gaps = 94/364 (25%)

Query: 225 IMYTSGTSGDPKGVVLTHETI----ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           +++TSGT G PKGV+LTH  I      + + ++L         T  DV++   PL H   
Sbjct: 192 VLFTSGTEGLPKGVMLTHNNILASERAYCARLNL---------TWQDVFMMPAPLGH--- 239

Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
                       + G+ HG           +    L G   V   I       L  L   
Sbjct: 240 ------------ATGFLHG-----------VTAPFLIGARSVLLDIFTP-DACLALLE-- 273

Query: 341 RRRIFDALYKYKLAWMNMGYKQREASP-LADLL-AFRKVKARLGGRLRLVISGGAPLSTE 398
                    + +   M +G     A+P + DLL    K  A L   LR  + GG  +  +
Sbjct: 274 ---------QQRCTCM-LG-----ATPFIYDLLNLLEKQPADLSA-LRFFLCGGTTIPKK 317

Query: 399 VEEFLRVTCC----AFLVQGYGLTETCGPTTVCFPDEMC--MVGTAG------PVSVYSE 446
           V        C      L+  YG TE+  P  V   D+     + T G       + V  E
Sbjct: 318 V-----ARECQQRGIKLLSVYGSTESS-PHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDE 371

Query: 447 LRLEEVPEMGYSPLDDPPC-GEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQIL 504
            R + +P         P C GE   RG  +F GY   P+LT  ++  +GW+++GD+ ++ 
Sbjct: 372 AR-KTLP---------PGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMD 421

Query: 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVV 561
             G +KI  RKK++I +  GE ++   +E++    P I D  V     + L     A VV
Sbjct: 422 EAGYIKITGRKKDII-VRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVV 480

Query: 562 PCEE 565
               
Sbjct: 481 LKAP 484

Length = 547

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 92.2 bits (229), Expect = 2e-19
 Identities = 97/341 (28%), Positives = 145/341 (42%), Gaps = 73/341 (21%)

Query: 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258
            + + L  G+   ++ +P    +I  + YT GT+G  KG +LTH  +   +  V   L Q
Sbjct: 186 PFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQ 245

Query: 259 F-EDKMTV----DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKP 313
              D   +     +V ++ LPL HI       Y F          G+ N L  +      
Sbjct: 246 LGPDGQPLMKEGQEVMIAPLPLYHI-------YAFTANCMCMMVSGNHNVLITN------ 292

Query: 314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM-GYKQREASPLADLL 372
                 PR        I   ++EL   R      L    +A M+  G+K  + S      
Sbjct: 293 ------PR-------DIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFS------ 333

Query: 373 AFRKVKARLGGRLRLVISGGAPL-STEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-D 430
                       L+L  SGG  L     E + ++T C  +V+GYGLTET  P     P  
Sbjct: 334 -----------ALKLTNSGGTALVKATAERWEQLTGCT-IVEGYGLTET-SPVASTNPYG 380

Query: 431 EMCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPC-------GEVCVRGKTLFSGYYKN 482
           E+  +GT G PV           P      +DD          GE+C++G  +  GY++ 
Sbjct: 381 ELARLGTVGIPV-----------PGTALKVIDDDGNELPLGERGELCIKGPQVMKGYWQQ 429

Query: 483 PDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           P+ T E++  +GWF TGDI  I P+G V+I+DRKK+LI +S
Sbjct: 430 PEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVS 470

Length = 562

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 92.3 bits (230), Expect = 2e-19
 Identities = 49/128 (38%), Positives = 62/128 (48%), Gaps = 24/128 (18%)

Query: 415 YGLTETCGPTTVC--------FPDE-----MCMVGTAGP----VSVYSELRLEEVPEMGY 457
           YGLTET GP TVC         P +         G   P    V+V     ++ VP    
Sbjct: 327 YGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPA--- 383

Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 517
              D    GE+  RG  +  GY KNP  T E+   GWFHTGD+  + P+G +KI DR K+
Sbjct: 384 ---DGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGYIKIKDRSKD 440

Query: 518 LIKISQGE 525
           +I IS GE
Sbjct: 441 II-ISGGE 447

Length = 545

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 92.2 bits (229), Expect = 2e-19
 Identities = 131/585 (22%), Positives = 194/585 (33%), Gaps = 162/585 (27%)

Query: 57  GNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116
           GNR      FVDG                VL + + L   G   G  V I   N   ++E
Sbjct: 29  GNRRRTGHEFVDG----------------VLSLAAGLLRLGLRNGDVVAIAALNSDLYLE 72

Query: 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDF--------VFVQDKKVK----ELLS 164
            + A      I  PL         N+     E           + V D+       EL +
Sbjct: 73  WLLAVACAGGIVAPL---------NYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQN 123

Query: 165 PDCRSAQRLRVMVCFTS-------LTAEQKEMAVQTGIKP----YSWDEFLHLGKVNEME 213
               S    +V +   S        +    EM  Q  +      Y+W             
Sbjct: 124 DRLPSL-MWQVFLESPSSSVFIFLNSFLTTEMLKQRALGTTELDYAW------------- 169

Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV-----DDV 268
                P +   I +TSGT+G PKGV ++H  +            Q   K+ +     DDV
Sbjct: 170 ----APDDAVLICFTSGTTGRPKGVTISHSALIV----------QSLAKIAIVGYGEDDV 215

Query: 269 YLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHE 328
           YL   PL HI                    G L++    LM        G   V      
Sbjct: 216 YLHTAPLCHI--------------------GGLSSALAMLM-------VGACHVL----- 243

Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL-------ADLLAF-RKVKAR 380
            + K            FDA    K A   +  KQ   + +       ADL++  RK    
Sbjct: 244 -LPK------------FDA----KAALQAI--KQHNVTSMITVPAMMADLISLTRKSMTW 284

Query: 381 LGGR-LRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA 438
                +R +++GG  LS+  + +  ++   A L   YG+TE C   T     +  +    
Sbjct: 285 KVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPK 344

Query: 439 GPVSVYSELRLEEVP--------------EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
             +   ++ +   V               E+     +    G +  RG  +  GY+    
Sbjct: 345 QTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSRVGRILTRGPHVMLGYWGQNS 404

Query: 485 LTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 543
            T   +  DGW  TGDIG I   G + +I R  + IK + GE V  E +E V    P + 
Sbjct: 405 ETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIK-TGGENVYPEEVEAVLSQHPGVA 463

Query: 544 DIWVYGDSLKSMLVAVVVPCEEDTKKWAYSN---GHAGSFLELCS 585
            + V G    S L  +VV C      W +S+    +A   L L S
Sbjct: 464 SVVVVG-VPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSS 507

Length = 563

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 89.3 bits (222), Expect = 3e-19
 Identities = 76/314 (24%), Positives = 120/314 (38%), Gaps = 73/314 (23%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI--- 278
           +    +T GT+G PK    +H           L        +   DV L+ LPL H+   
Sbjct: 4   LAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSG-----LGPGDVLLNGLPLFHVGGA 58

Query: 279 LDRVIEEYFFRRGASV------GYYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHE 328
           +   +      RGA+V      G+ +    A+  +  ++    + TLL+ VP V      
Sbjct: 59  IVTGLAP--LARGATVVLPTPSGFRN---PAVVANFWKIVERYRVTLLSAVPTV------ 107

Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLV 388
                                                  LA LL      A +   LR  
Sbjct: 108 ---------------------------------------LAALLQVPLGDADIS-SLRYA 127

Query: 389 ISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL 447
           ++G APL  EV   F  VT    +V+GYG+TE  G + +         G+ G    Y+ +
Sbjct: 128 LTGAAPLPVEVARRFEAVTGVP-VVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYTRV 186

Query: 448 RLEEVPEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP 505
           R+ ++   G    D  P   G + +RG  +F GY  +       + DGW +TGD+G+I  
Sbjct: 187 RVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLNDAHNAGARLEDGWLNTGDLGRIDA 246

Query: 506 NGVVKIIDRKKNLI 519
           +G + +  R K+LI
Sbjct: 247 DGYLWLTGRAKDLI 260

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 90.4 bits (225), Expect = 6e-19
 Identities = 65/242 (26%), Positives = 93/242 (38%), Gaps = 35/242 (14%)

Query: 42  NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPG 101
            T  DI   S ++YP    L         FG   W TY E+   V ++ +AL   G + G
Sbjct: 11  QTIGDILRRSARRYPDKTAL--------VFGDRSW-TYAELDAAVNRVAAALLDLGLKKG 61

Query: 102 CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE 161
            RV   G N   +     AC     + VP+   L    + +ILDH+      V       
Sbjct: 62  DRVAALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPA---- 117

Query: 162 LLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF- 220
            L+P   +A  L  +            + +     P  W +F    +   +    P    
Sbjct: 118 -LAPTAEAALALLPVDTLIL------SLVLGGREAPGGWLDFADWAEAGSVA--EPDVEL 168

Query: 221 ---NICTIMYTSGTSGDPKGVVLTHET-IATFVSG-VDLFLDQFEDKMTVDDVYLSFLPL 275
              ++  I+YTSGT   PKG +LTH   IA +VS  V          M+ DD+ L  LPL
Sbjct: 169 ADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-------DMSADDIPLHALPL 221

Query: 276 AH 277
            H
Sbjct: 222 YH 223

Length = 523

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 88.9 bits (221), Expect = 2e-18
 Identities = 114/499 (22%), Positives = 185/499 (37%), Gaps = 79/499 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ EEV +  +ALR  G E   RV +   + P++  A      +  + VP+   L P
Sbjct: 32  TYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTP 91

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               + L+ +    + +  +++ E+L P  +    LR ++            A       
Sbjct: 92  DDYRYYLNDSRARVLVI-SEELWEVLKPALQKDPHLRHVIVVGGAGPGALSYA------- 143

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
               + +      E+E       ++   +Y+SG++G PKGVV  H  +       + +  
Sbjct: 144 ----QLIA-TAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTA---EAYAK 195

Query: 258 QFEDKMTVDDVYLSF--LPLAHILDRVIEEYF-FRRGASVGYYHGDLNALR--DDLMELK 312
                +T DDV  S   L  A+ L   +  YF    GA+                +   K
Sbjct: 196 NVL-GITEDDVVFSAAKLFFAYGLGNGL--YFPLSVGATTVLMPERPTPDAVFATIERYK 252

Query: 313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372
           PT+  GVP                           LY                   A +L
Sbjct: 253 PTVFFGVP--------------------------TLY-------------------AAML 267

Query: 373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM 432
           A  +   R    LRL +S G  L  E+    +      ++ G G TE         P   
Sbjct: 268 AAPEKPERDLSSLRLCVSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSNRPGA- 326

Query: 433 CMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII 491
              GT+G PV  Y E++L  V E G   + D   GE+ VRG +  +GY+   + TRE+ +
Sbjct: 327 VKYGTSGKPVPGY-EVKL--VDEDG-EEVADGEIGELWVRGDSSAAGYWNRREKTRETFV 382

Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDS 551
             W  TGD      +G      R  +++K+S G +V+   +E+     P + +  V G  
Sbjct: 383 GEWTRTGDKYYRDEDGYYWYCGRSDDMLKVS-GIWVSPFEVEDALLQHPAVLEAAVVGAE 441

Query: 552 LKSMLV---AVVVPCEEDT 567
            +  L    A VV  +   
Sbjct: 442 DEDGLTKPKAFVVLKDGYQ 460

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 88.1 bits (219), Expect = 3e-18
 Identities = 56/203 (27%), Positives = 88/203 (43%), Gaps = 17/203 (8%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E Y+   ++ SAL   G   G  V +   N P  +EA         + VPL   L  
Sbjct: 31  TYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPLNTRLDA 90

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ---RLRVMVCFTSLTAEQKEMAVQTG 194
             + FIL+H+E   +FV D++   L             +   +   S  AE  E      
Sbjct: 91  DDIAFILNHSEAKVLFV-DQEFLSLAEEALALLSTKEIIDTEIIVISPAAEDSEE----- 144

Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
                +++ L  G  + + I P   ++  ++ YTSGT+G+PKGVV TH     +++ +  
Sbjct: 145 ---GDYEDLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHR--GAYLNALGN 199

Query: 255 FLDQFEDKMTVDDVYLSFLPLAH 277
            +   E  M    VYL  LP+ H
Sbjct: 200 VI---EWGMPDRPVYLWTLPMFH 219

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 88.9 bits (220), Expect = 3e-18
 Identities = 93/455 (20%), Positives = 152/455 (33%), Gaps = 95/455 (20%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+     ++   L + G  PG  V I      + V A+ A        VPL      
Sbjct: 254 TYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPA 313

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + +IL+ +    +  Q       L  D      L                A+   +  
Sbjct: 314 ERLAYILEDSRPTLLLTQ-----AHLRVDDVGLPGL----------------ALDDALSE 352

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
               + +    + +          +  I+YTSG++G PKGV + H  +A  ++       
Sbjct: 353 IPDTDPIPQALLGD---------ALAYIIYTSGSTGQPKGVRIEHRALANLLNDAG---A 400

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR--GASV----GYYHGDLNALRDDLMEL 311
           +F   +  DD  L+   L+   D  + E F     GA +         D  AL + L   
Sbjct: 401 RFG--LDADDRVLALASLS--FDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQ 456

Query: 312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL 371
             T+L  VP                                   + +         L   
Sbjct: 457 GITVLLLVP---------------------------------LLLRL---------LLLA 474

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC--AFLVQGYGLTETCGPTTVCFP 429
                + +    RLR ++SGG  L   + + L         L+  YG TE     T+  P
Sbjct: 475 ALAPDLISPCE-RLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEA----TLDAP 529

Query: 430 DEMCMVGTAGPVSVYSELRLEEVPEM--GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487
                      V +   +   ++  +  G  PL     GE+ + G  L  GY   PDLT 
Sbjct: 530 SFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVPGELYIAGLGLALGYLNRPDLTA 589

Query: 488 ES-IIDGWFHTGDIGQILPNGVVKIIDRKKNLIKI 521
           E  I    + TGD+ + L +G ++ + RK + +KI
Sbjct: 590 ERFIALRLYRTGDLARPLADGALEYLGRKDSQVKI 624

Length = 642

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 86.6 bits (215), Expect = 6e-18
 Identities = 94/357 (26%), Positives = 130/357 (36%), Gaps = 80/357 (22%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK---MTVDDVYLS----FL- 273
           I   +YTSGT+G PKGV+  H    TF        + F  +   +   D   S    F  
Sbjct: 93  IAYWLYTSGTTGKPKGVMHRHRDPLTFA-------EAFARELLGLQPGDRIFSSSKLFFA 145

Query: 274 -PLAHILDRVIEEYF-FRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
             L + L       F    GAS     G     A+ D L   +PT+L GVP         
Sbjct: 146 YGLGNSL------LFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVP--------- 190

Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
                            ALY                     LL      A L   +RL +
Sbjct: 191 -----------------ALY-------------------RALLESGAGSAPLFRSVRLCV 214

Query: 390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELR 448
           S G  L   + E         ++ G G TE         P      GT G PV  Y E R
Sbjct: 215 SAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFISNRPGAA-RPGTTGRPVPGY-EAR 272

Query: 449 LEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGV 508
           L  V E G         G++ VRG +L  GY+  P+ T+ ++ DGW  TGD      +G 
Sbjct: 273 L--VDESGREVPAGTV-GDLWVRGPSLAPGYWNLPEKTQRTLRDGWLRTGDRFSRDADGW 329

Query: 509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED---IWVYGDSLKSMLVAVVVP 562
            +   R  ++IK+S G++V+   +E      P + +   + V  +     L A VVP
Sbjct: 330 YRYQGRADDMIKVS-GQWVSPLEVEAALGEHPAVAEAAVVAVPDEDGLVRLKAFVVP 385

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 86.9 bits (216), Expect = 6e-18
 Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 16/145 (11%)

Query: 411 LVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC---- 465
           + Q YG+TET     T+   D +  +G+AG      EL++E+         D        
Sbjct: 281 VYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEK---------DGVVVPPFE 331

Query: 466 -GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG 524
            GE+ V+G  +  GY    D TRE+  DGWF TGDIG +   G + ++DR+ +LI IS G
Sbjct: 332 EGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDLI-ISGG 390

Query: 525 EYVALEYLENVYCVAPIIEDIWVYG 549
           E +    +E V    P + +  V G
Sbjct: 391 ENIYPAEIEEVLLSHPGVAEAGVVG 415

Length = 483

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 87.2 bits (216), Expect = 6e-18
 Identities = 98/370 (26%), Positives = 153/370 (41%), Gaps = 63/370 (17%)

Query: 202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFED 261
           E L LG+ + M  L  +P +I  + YT GT+G  KG +LTH  +   +     +L     
Sbjct: 190 EALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGK 249

Query: 262 KMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPR 321
                +V ++ LPL HI         F +        G  N L  +            PR
Sbjct: 250 LEEGCEVVITALPLYHIFALTANGLVFMK-------IGGCNHLISN------------PR 290

Query: 322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARL 381
                   +   ++EL+  R   F  +        N  +     +P  D + F  +K  L
Sbjct: 291 -------DMPGFVKELKKTRFTAFTGV--------NTLFNGLLNTPGFDQIDFSSLKMTL 335

Query: 382 GGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV 441
           GG       G A   +  E + +VT    LV+ YGLTET  P     P  + +    G +
Sbjct: 336 GG-------GMAVQRSVAERWKQVTGLT-LVEAYGLTET-SPAACINP--LTLKEYNGSI 384

Query: 442 SVYSELRLEEVPEMGYSPLDDP-------PCGEVCVRGKTLFSGYYKNPDLTRESI-IDG 493
            +        +P       DD          GE+C++G  +  GY+K P+ T + +  DG
Sbjct: 385 GL-------PIPSTDACIKDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADG 437

Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DS 551
           W HTGDI ++   G V I+DRKK++I +S G  V    +E+V  + P + ++   G  D 
Sbjct: 438 WLHTGDIARMDEQGFVYIVDRKKDMILVS-GFNVYPNEIEDVIAMMPGVLEVAAVGVPDE 496

Query: 552 LKSMLVAVVV 561
               +V VV+
Sbjct: 497 KSGEIVKVVI 506

Length = 560

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 86.8 bits (215), Expect = 9e-18
 Identities = 128/515 (24%), Positives = 193/515 (37%), Gaps = 104/515 (20%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY  + E VL + S LR  G   G RV IY     + V AM        + VP+   L  
Sbjct: 27  TYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKA 86

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             V  IL    +  + V   +  +LL P       LR ++         +      G +P
Sbjct: 87  EQVAHILADCNVR-LLVTSSERLDLLHPALPGCHDLRTLIIVGDPAHASEGHP---GEEP 142

Query: 198 YSWDEFLHLGKVNEMEILPPQPF---NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
            SW + L LG        PP P    ++  I+YTSG++G PKGVVL+H  +      V  
Sbjct: 143 ASWPKLLALGDA-----DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVAT 197

Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPT 314
           +L+        DD  L+ LPL+        +Y F +  +  +Y G    L D L+     
Sbjct: 198 YLE-----NRPDDRLLAVLPLSF-------DYGFNQ-LTTAFYVGATVVLHDYLL----- 239

Query: 315 LLAGVPR-VFEKI-HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372
                PR V + +   GI   L  + PL  ++       +L W           P +   
Sbjct: 240 -----PRDVLKALEKHGI-TGLAAVPPLWAQLA------QLDW-----------PESAAP 276

Query: 373 AFRKVKARLGGRL-RLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
           + R +    GG + R  +S           FL           YGLTE    T +  P+E
Sbjct: 277 SLRYL-TNSGGAMPRATLSRLRSFLPNARLFLM----------YGLTEAFRSTYLP-PEE 324

Query: 432 M----CMVGTAGP---VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
           +      +G A P   V V  E   E  P            GE+  RG  +  GY+ +P+
Sbjct: 325 VDRRPDSIGKAIPNAEVLVLREDGSECAPG---------EEGELVHRGALVAMGYWNDPE 375

Query: 485 LTRESI--------------IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALE 530
            T E                +  W  +GD  +    G +  + R+  +IK S G  V+  
Sbjct: 376 KTAERFRPLPPFPGELHLPELAVW--SGDTVRRDEEGFLYFVGRRDEMIKTS-GYRVSPT 432

Query: 531 YLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVP 562
            +E V     ++ +   +G    +L   +V VV P
Sbjct: 433 EVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTP 467

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 86.1 bits (214), Expect = 1e-17
 Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 26/164 (15%)

Query: 384 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF-----PDEMCMVGTA 438
            LR++  GGAPLS E+   +       L Q +G+ E  G   V +     P ++ M  T 
Sbjct: 256 SLRVIQVGGAPLSPELARRVEERLGCPLQQVFGMAE--G--LVNYTRLDDPPDVIM-RTQ 310

Query: 439 G-PVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII- 491
           G P+S   E+R+     E VP            GE+  RG     GYY+ P+    +   
Sbjct: 311 GRPISPADEIRIVDDQGEPVPPGEV--------GELLTRGPYTIRGYYRAPEHNARAFTD 362

Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
           DG++ TGD+ +I  +G  +++ R K+ I    GE ++ E +EN+
Sbjct: 363 DGFYRTGDLVRIDADGYYRVVGRIKDQI-NRGGEKISPEEIENL 405

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 85.7 bits (212), Expect = 2e-17
 Identities = 58/168 (34%), Positives = 81/168 (48%), Gaps = 22/168 (13%)

Query: 390 SGGAP----LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF---------PDEMCMVG 436
           +G AP    L    E+  RVT        YGL+ET GP+TVC          P+E   + 
Sbjct: 318 AGAAPPPSVLFAMSEKGFRVT------HTYGLSETYGPSTVCAWKPEWDSLPPEEQARLN 371

Query: 437 TAGPVSVYSELRLEEV--PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGW 494
               V       L+ V    M   P D    GE+ +RG  +  GY KNP    E+  +GW
Sbjct: 372 ARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGW 431

Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
           FH+GD+G   P+G ++I DR K++I IS GE ++   +ENV    P +
Sbjct: 432 FHSGDLGVKHPDGYIEIKDRSKDII-ISGGENISSLEVENVVYTHPAV 478

Length = 567

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 83.8 bits (208), Expect = 2e-17
 Identities = 89/379 (23%), Positives = 149/379 (39%), Gaps = 106/379 (27%)

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           ++  I+YTSG++G+PKGV+L+H  +      +  +L+     +T DD  L+ LP +    
Sbjct: 3   DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLE-----LTEDDRILAVLPFSF--- 54

Query: 281 RVIEEY-------FFRRGASV------GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIH 327
               +Y        FR G ++       +    L  L  +    + T  AGVP  + +  
Sbjct: 55  ----DYGLSQLLTAFRVGGTLVLESRFAFPRDVLKHLAKE----RITGFAGVPTTWAQ-- 104

Query: 328 EGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRL 387
                 L  L PL R  F +L                                     R 
Sbjct: 105 ------LLRLDPLAREDFPSL-------------------------------------RY 121

Query: 388 VISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----MCMVGTAGPVS 442
           + + G  L  + + +  R    A L   YGLTE    +T   P+E       +G A P  
Sbjct: 122 LTNAGGALPAKTILQLRRAFPDAKLFSMYGLTE-AFRSTYLPPEELDRRPDSIGKAIP-- 178

Query: 443 VYSELRLEEVPEMGYSPLDDPPC-----GEVCVRGKTLFSGYYKNPDLTRESII------ 491
              EL + +         D   C     GE+  RG  +  GY+ +P+ T E +       
Sbjct: 179 -NVELWVVDE--------DGNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPG 229

Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG-- 549
           +   +TGD+ ++   G +  + RK ++IK ++G  V+   +E V C  P++ +  V G  
Sbjct: 230 EIVLYTGDLVRMDEEGYLYFVGRKDDMIK-TRGYRVSPTEIEEVICAHPLVAEAAVIGVP 288

Query: 550 -DSLKSMLVAVVVPCEEDT 567
              L   +VAVVV  + ++
Sbjct: 289 DPLLGQAIVAVVVSADGES 307

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 85.3 bits (211), Expect = 2e-17
 Identities = 60/184 (32%), Positives = 93/184 (50%), Gaps = 9/184 (4%)

Query: 383 GRLRLVISGGAPL-STEVEEFLRVTCCAFLVQGYGLTETC-GPTTVCFPDEMCMVGTAGP 440
             L   I GG     + + +F RV   A  +  YGLTETC G T +    E+  +G+ G 
Sbjct: 264 DSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGR 323

Query: 441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDI 500
              + E+R+ +     + P +    GE+C+RG  +  GY+K+P+ T E+    WF +GD+
Sbjct: 324 ALAHVEIRIAD-GAGRWLPPNMK--GEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDV 380

Query: 501 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLV 557
           G +   G + + DRKK++I IS GE +A   +E V    P + +  V G   D     + 
Sbjct: 381 GYLDEEGFLYLTDRKKDMI-ISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERIT 439

Query: 558 AVVV 561
           AVVV
Sbjct: 440 AVVV 443

Length = 497

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 85.5 bits (212), Expect = 2e-17
 Identities = 52/143 (36%), Positives = 81/143 (56%), Gaps = 11/143 (7%)

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFP-DEMCMVGTAG-P 440
            L+L + GG  +   V E ++++T   +L++GYGLTE C P     P D     G+ G P
Sbjct: 326 SLKLSVGGGMAVQQAVAERWVKLTGQ-YLLEGYGLTE-CSPLVSVNPYDLDYYSGSIGLP 383

Query: 441 V-SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGD 499
           V S   +L  ++  E+   P  +P  GE+ V+G  +  GY++ P+ T E I DGW  TGD
Sbjct: 384 VPSTEIKLVDDDGNEV---PPGEP--GELWVKGPQVMLGYWQRPEATDEVIKDGWLATGD 438

Query: 500 IGQILPNGVVKIIDRKKNLIKIS 522
           I  +   G ++I+DRKK++I +S
Sbjct: 439 IAVMDEEGFLRIVDRKKDMILVS 461

Length = 560

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 85.4 bits (212), Expect = 2e-17
 Identities = 57/184 (30%), Positives = 82/184 (44%), Gaps = 16/184 (8%)

Query: 384 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443
            LRLV++G   L     E         +++GYG TE     +V  P      GT G    
Sbjct: 260 SLRLVVAGAEKLPEATRELFEEKFGIRILEGYGATECSPVISVNTPMGNK-PGTVGRPLP 318

Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--DGWFHTGDIG 501
             E+R+       +  L     G + VRG  + SGY  N + T E  +  DGW+ TGDIG
Sbjct: 319 GIEVRIVSPE--THEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIG 376

Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVV 561
           +I  +G + I+ R K   KI  GE V+L  +E       ++ +I        S+  AV V
Sbjct: 377 KIDEDGFLTIVGRLKRFAKIG-GEMVSLTAVEE------LLSEIL----PEDSLHAAVEV 425

Query: 562 PCEE 565
           P E+
Sbjct: 426 PDEK 429

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 84.9 bits (211), Expect = 3e-17
 Identities = 137/513 (26%), Positives = 191/513 (37%), Gaps = 159/513 (30%)

Query: 64  RPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNA 123
            PF++   G     TY ++     ++ + L A G +PG RV +     P   EA+    A
Sbjct: 18  APFIETPDGLRY--TYGDLDAASARLANLLVALGVKPGDRVAVQVEKSP---EAL----A 68

Query: 124 LSLICV-------PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVM 176
           L L  +       PL        +++ +  AE   + V D      LS     A      
Sbjct: 69  LYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPA-LVVCDPANFAWLSK---IAAAAGAP 124

Query: 177 VCFT-------SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS 229
              T       SL                  D+F         E +P    ++  I+YTS
Sbjct: 125 HVETLDADGTGSLLEAAAAAP----------DDF---------ETVPRGADDLAAILYTS 165

Query: 230 GTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFF 288
           GT+G  KG +L+H  + +  ++ VD +      + T DDV +  LP+ H           
Sbjct: 166 GTTGRSKGAMLSHGNLLSNALTLVDYW------RFTPDDVLIHALPIFHT---------- 209

Query: 289 RRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL 348
                    HG   A           LLAG   +F                L +  FD  
Sbjct: 210 ---------HGLFVAT-------NVALLAGASMIF----------------LPK--FDP- 234

Query: 349 YKYKLAWMN-----MG----YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV 399
               LA M      MG    Y +    P        +  A     +RL ISG APL  E 
Sbjct: 235 -DAVLALMPRATVMMGVPTFYTRLLQEP-----RLTREAAA---HMRLFISGSAPLLAET 285

Query: 400 -EEFLRVTCCAFLVQGYGLTETCGPT-----------TVCFPDEMCMVGTAGPVSVYSEL 447
             EF   T  A L + YG+TET   T           TV FP    + G          L
Sbjct: 286 HREFQERTGHAIL-ERYGMTETNMNTSNPYDGERRAGTVGFP----LPGV--------SL 332

Query: 448 RLEEVPEMGYSPLDDPPCGEVC---VRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQI 503
           R+ + PE G + L   P GE+    V+G  +F GY++ P+ T E    DG+F TGD+G+I
Sbjct: 333 RVTD-PETG-AEL---PPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKI 387

Query: 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
              G V I+ R K+LI IS G Y       NVY
Sbjct: 388 DERGYVHIVGRGKDLI-ISGG-Y-------NVY 411

Length = 504

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 82.9 bits (205), Expect = 1e-16
 Identities = 126/526 (23%), Positives = 191/526 (36%), Gaps = 171/526 (32%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           GP V  TY ++++  L++  AL   G + G RV     N  + +EA      +  IC  +
Sbjct: 35  GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTV 94

Query: 132 YDTLGPGAVNFILDHAE-----IDFVFVQDKKVKELLSPDCRSAQRLRVM---------- 176
              L P  + +I++HAE      D  FV    + E ++    S +R  V+          
Sbjct: 95  NPRLFPEQIAWIINHAEDRVVITDLTFV---PILEKIADKLPSVERYVVLTDAAHMPQTT 151

Query: 177 ----VCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTS 232
               V +    AE            ++W  F                     + YTSGT+
Sbjct: 152 LKNAVAYEEWIAEAD--------GDFAWKTF--------------DENTAAGMCYTSGTT 189

Query: 233 GDPKGVVLTHET---IATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI----------- 278
           GDPKGV+ +H +    A   +  D          +  D  L  +PL H            
Sbjct: 190 GDPKGVLYSHRSNVLHALMANNGDAL------GTSAADTMLPVVPLFHANSWGIAFSAPS 243

Query: 279 -----------LDRVIEEYFFRRGASVGYYHGDLNALRDDLMEL-KPTLLAGVPRVFEKI 326
                      LD          GASV  Y         +L++  K T  AGVP V+  +
Sbjct: 244 MGTKLVMPGAKLD----------GASV--Y---------ELLDTEKVTFTAGVPTVWLML 282

Query: 327 HEGIKKALEELRPLR----------RRIFDALYKYKL----AW-MNMGYKQREASPLADL 371
            + ++K   +L  L+          R +  A     +    AW M       E SPL  L
Sbjct: 283 LQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFEDMGVEVRHAWGMT------EMSPLGTL 336

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
            A +   ++L G  RL +                       QGY       P  V    E
Sbjct: 337 AALKPPFSKLPGDARLDV--------------------LQKQGYP------PFGV----E 366

Query: 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII 491
           M +   AG          +E+P       D    G + VRG  + + YY+        I+
Sbjct: 367 MKITDDAG----------KELPW------DGKTFGRLKVRGPAVAAAYYRVDG----EIL 406

Query: 492 D--GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
           D  G+F TGD+  I   G ++I DR K++IK S GE+++   LEN+
Sbjct: 407 DDDGFFDTGDVATIDAYGYMRITDRSKDVIK-SGGEWISSIDLENL 451

Length = 542

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 82.7 bits (205), Expect = 1e-16
 Identities = 88/345 (25%), Positives = 137/345 (39%), Gaps = 111/345 (32%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I ++SG++G+PKGV+LTH+ + T +  +         ++T +DV+LS++PL H       
Sbjct: 111 IQFSSGSTGEPKGVILTHKNLLTNIEAIIEAA-----EITSEDVFLSWMPLTH------- 158

Query: 285 EYFFRRGASVGYYHGDLNALRDDLME-LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 343
                    +G     L      + + L PT      R+F +            RPL   
Sbjct: 159 --------DMGLIGFHLTPTALGINQYLMPT------RLFIR------------RPL--L 190

Query: 344 IFDALYKYKLAWM---NMGYKQ------REASPLADLLAFRKVKARLGGRLRLVISGGAP 394
             D   +++   +   N GYK        E     DL + R           L+ +G  P
Sbjct: 191 WLDKASQHRATILSSPNFGYKYLLKHFKTEKIIDWDLSSVR-----------LIFNGAEP 239

Query: 395 LSTEV-EEF--------LRVTCCAFLVQGYGLTETCGPTTVCFP---------------- 429
           +S ++ EEF        LR      +   YGL E      V FP                
Sbjct: 240 ISADLCEEFLEKMAPFGLRPNA---MYPVYGLAEAT--LAVSFPKPGEPFKTVCLDRNHL 294

Query: 430 --------------DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 475
                         D +  V    P+    E+R+  V + G   L D   G + ++G  +
Sbjct: 295 KVGVKIIEIDPKNSDAISFVEVGSPID-GCEIRI--VDDAGEV-LPDRTIGHIQIKGDNV 350

Query: 476 FSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLI 519
            SGYY NP+ T++SI  DGW  TGD+G +  NG + I  R K++I
Sbjct: 351 TSGYYNNPEATKKSITPDGWLKTGDLGFLR-NGRLVITGRAKDII 394

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 82.4 bits (203), Expect = 2e-16
 Identities = 61/197 (30%), Positives = 91/197 (46%), Gaps = 44/197 (22%)

Query: 388 VISGGAP----LSTEVEEFLRVTCCAFLV-QGYGLTETCGPTTVC--------FPDEMCM 434
           V++GG+P    L  +V+         F V   YGLTE  GP   C         P+   M
Sbjct: 305 VLTGGSPPPAALVKKVQRL------GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQM 358

Query: 435 ---------VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
                    +     V V ++   E VP       D    GE+ ++G ++  GY KNP  
Sbjct: 359 ELKARQGVSILGLADVDVKNKETQESVPR------DGKTMGEIVIKGSSIMKGYLKNPKA 412

Query: 486 TRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDI 545
           T E+   GW +TGD+G I P+G V+I DR K++I IS GE ++   +ENV         +
Sbjct: 413 TSEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDII-ISGGENISSVEVENV---------L 462

Query: 546 WVYGDSLKSMLVAVVVP 562
           + Y   L++ +VA+  P
Sbjct: 463 YKYPKVLETAVVAMPHP 479

Length = 579

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 82.3 bits (204), Expect = 3e-16
 Identities = 83/312 (26%), Positives = 114/312 (36%), Gaps = 81/312 (25%)

Query: 228 TSGTSGDPKGVVLTH--ETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR-VIE 284
           T GT+G PK    TH  E    ++  + L L          D     LPL H+    V  
Sbjct: 221 TGGTTGMPKLAQHTHGNEVANAWLGALLLGLGP-------GDTVFCGLPLFHVNALLVTG 273

Query: 285 EYFFRRGASV------GYYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKAL 334
                RGA V      GY       +  +  ++    +   L+GVP V            
Sbjct: 274 LAPLARGAHVVLATPQGYRG---PGVIANFWKIVERYRINFLSGVPTV------------ 318

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
                                             A LL    V       LR  + G AP
Sbjct: 319 ---------------------------------YAALLQ-VPVDGHDISSLRYALCGAAP 344

Query: 395 LSTEV-EEFLRVTCCAFLVQGYGLTE-TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV 452
           L  EV   F   T    +V+GYGLTE TC  ++V  PD    +G+ G    Y  +R+  +
Sbjct: 345 LPVEVFRRFEAATGVR-IVEGYGLTEATCV-SSVNPPDGERRIGSVGLRLPYQRVRVVIL 402

Query: 453 PEMGYSPLDDPP--CGEVCVRGKTLFSGYY---KNPDLTRESIIDGWFHTGDIGQILPNG 507
            + G    D      G +C+ G  +FSGY     N  L  E   DGW +TGD+G+I  +G
Sbjct: 403 DDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAHNKGLWLE---DGWLNTGDLGRIDADG 459

Query: 508 VVKIIDRKKNLI 519
              +  R K+LI
Sbjct: 460 YFWLTGRAKDLI 471

Length = 632

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 81.9 bits (203), Expect = 3e-16
 Identities = 124/508 (24%), Positives = 177/508 (34%), Gaps = 150/508 (29%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+      I + L+A G  PG RV +       +V A   C     I VP       
Sbjct: 25  TYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRRL 83

Query: 138 GA----VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
           G     +  IL  A    V      V   L     +   L +++      A     A+  
Sbjct: 84  GRHLARLAAILADAGARAVLT-TSAVLAALRAALAAPAALLLLLIAADDLA-----ALAA 137

Query: 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
                 W               PP P +I  + YTSG++G PKGV++TH  +   ++ + 
Sbjct: 138 A----DW------------RPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNL---LANLR 178

Query: 254 LFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDL----M 309
                F   +  DDV +S+LPL                     YH        D+     
Sbjct: 179 AIARAFG--LDPDDVGVSWLPL---------------------YH--------DMGLIGG 207

Query: 310 ELKPTLLAGVPRVFEKIHEGIKKALEELRP---LRR--RIFDALYKYKLAWM---NMGYK 361
            L+P L AG P V              + P   LRR  R  +A+ +Y+       N  Y 
Sbjct: 208 LLQP-LYAGFPVVL-------------MSPLAFLRRPLRWLEAISRYRATVSGAPNFAY- 252

Query: 362 QREASPLADLLAFRKVK-ARLGG----RLRLVISGGAPLSTE-VEEFLRVTCCAFLVQG- 414
                   DL   R+V+  +L G      R+  +G  P+  + +E F       F   G 
Sbjct: 253 --------DLCV-RRVRDEQLAGLDLSSWRVAFNGAEPVRADTLERFAE----RFAPAGF 299

Query: 415 --------YGLTETC----------GPTTVCFPDEMCMVGTAGP-----------VSVYS 445
                   YGL E            GP  +    +    G A             VS   
Sbjct: 300 RPEAFLPCYGLAEATLAVSGGPPGAGPVVLRVDRDALARGGAAVAAADGAAARELVSCGR 359

Query: 446 ELRLEEV----PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGW 494
            L   EV    PE    PL D   GE+ VRG ++ +GY+  P+ T E+          GW
Sbjct: 360 PLPGHEVRIVDPE-TRRPLPDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGW 418

Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKIS 522
             TGD+G  L +G + +  R K+LI I 
Sbjct: 419 LRTGDLG-FLHDGELYVTGRLKDLIIIR 445

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 81.1 bits (201), Expect = 3e-16
 Identities = 76/325 (23%), Positives = 113/325 (34%), Gaps = 91/325 (28%)

Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
            P +   ++YTSG++G PKGVV+TH  I  F+                 D  L F  +A 
Sbjct: 97  SPDDPAYVIYTSGSTGKPKGVVITHRNICNFL---RAEGAILGI--RPGDRVLQFASIA- 150

Query: 278 ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG---VPRVFEKIHEGIKKAL 334
             D  I E F                          TLLAG   V    E   E + + L
Sbjct: 151 -FDVSILEIFT-------------------------TLLAGGTLVIPPEELRLEDLAEFL 184

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASP-LADLLAFRKVKARLGGRLRLVISGGA 393
             LR                  ++       +P L  LL    V       LR +I GG 
Sbjct: 185 NRLRV--------------TVAHL-------TPSLLALLDPEDVP-----SLRTLILGGE 218

Query: 394 PLSTEVEEFLRVTCCAFLVQGYGLTETC--GPTTVCFPDEMCMVGTAGPVSVYSELRLEE 451
                + +         L+  YG TE       +   P +   +G   P+  Y+   L  
Sbjct: 219 ACPQALVDRWSKPRR--LLNTYGPTEATVTATASRLTPGKPVNIG--RPLPNYTCWVL-- 272

Query: 452 VPEMGYSPLDDPPC-----GEVCVRGKTLFSGYYKNPDLTRESII------DGW----FH 496
                  P  +P       GE+C+ G  +  GY   P+LT E  I      +      + 
Sbjct: 273 ------DPDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYR 326

Query: 497 TGDIGQILPNGVVKIIDRKKNLIKI 521
           TGD+ + L +G ++ + RK + +KI
Sbjct: 327 TGDLVRYLEDGSLEFLGRKDDQVKI 351

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 80.9 bits (200), Expect = 4e-16
 Identities = 79/319 (24%), Positives = 116/319 (36%), Gaps = 83/319 (26%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDD------VYLSFL 273
              + +TSGT+G PK V+ TH      +     +LD   D +  T+ D       + S  
Sbjct: 83  PALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLHWTIADPGWAKGAWSSLF 142

Query: 274 -PLAHILDRVIEEYFFRRGASVGYYHGD-LNALR--DDLMELKPTLLAGVPRVFEKIHEG 329
            P                GA+V  YHG   +A R  + L     T     P  +      
Sbjct: 143 APWLL-------------GAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAY------ 183

Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
                   R L ++                          DL ++          LR V+
Sbjct: 184 --------RMLLQQ--------------------------DLSSYDF------SHLRHVV 203

Query: 390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELR 448
           S G PL+ EV ++ R      +  GYG TET G     FP      G+ G P   Y   R
Sbjct: 204 SAGEPLNPEVIDWWRAATGLPIRDGYGQTET-GLLVANFPGMEVKPGSMGRPAPGY---R 259

Query: 449 LEEVPEMG-YSPLDDPPCGEVCVRGKT----LFSGYYKNPDLTRESIIDGWFHTGDIGQI 503
           +  + + G   P  +   G++ VR K     LF GY K+P+ T  +I   W+ TGD    
Sbjct: 260 VAIIDDEGNELPPGEE--GDIAVRVKPRPPGLFRGYLKDPEKTEATIRGDWYLTGDRAIK 317

Query: 504 LPNGVVKIIDRKKNLIKIS 522
             +G    + R  ++IK S
Sbjct: 318 DEDGYFWFVGRADDVIKSS 336

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 80.6 bits (200), Expect = 5e-16
 Identities = 77/330 (23%), Positives = 118/330 (35%), Gaps = 91/330 (27%)

Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
            P ++  ++YTSG++G PKGV++ H  +   ++      +++   +T  D  L F   + 
Sbjct: 91  DPDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAW---LQERYG--LTAGDRVLQFASFSF 145

Query: 278 ILDRVIEEYF--FRRGASVGYY------HGDLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
             D  + E F     GA++           D  AL + L E + T+L  VP +   +   
Sbjct: 146 --DASVWEIFPPLLSGATL--VLAPPEVLRDPEALAELLREHRITVLHLVPSLLRAL--- 198

Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
               L+ L P                                             LRLVI
Sbjct: 199 ----LDALEPAALP----------------------------------------SLRLVI 214

Query: 390 SGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVC------FPDEMCMVGTAGP-V 441
            GG  L  E V  +  +   A LV  YG TET    T               +G      
Sbjct: 215 VGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIGRPIANT 274

Query: 442 SVY--SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH--- 496
            VY   E  L  VP            GE+ + G  +  GY   P+LT E  +   F    
Sbjct: 275 RVYVLDE-DLRPVPVGV--------PGELYIGGAGVARGYLNRPELTAERFVPDPFGGPG 325

Query: 497 -----TGDIGQILPNGVVKIIDRKKNLIKI 521
                TGD+ + LP+G ++ + R  + +KI
Sbjct: 326 ERLYRTGDLARWLPDGNLEFLGRADDQVKI 355

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 80.5 bits (199), Expect = 9e-16
 Identities = 54/166 (32%), Positives = 70/166 (42%), Gaps = 33/166 (19%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-------DEMCMVGT 437
           LR VI  GAP+    ++         LVQ +GL E  G  TV  P            +GT
Sbjct: 282 LRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGT 341

Query: 438 AGPVSVYSELRLEEVPEMGYSPLDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRESI 490
            G           E   M     DD     PP   GE+CV G  +F+GYY NP+   ++ 
Sbjct: 342 CG----------FERTGMEVQIQDDEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF 391

Query: 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
            DGWF TGD+G +   G + I  R  ++  IS G         NVY
Sbjct: 392 RDGWFRTGDLGHLDARGFLYITGRASDMY-ISGG--------SNVY 428

Length = 528

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 78.9 bits (194), Expect = 3e-15
 Identities = 64/171 (37%), Positives = 87/171 (50%), Gaps = 11/171 (6%)

Query: 384 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQ-GYGLTE-TCGPTTVCFPDEMCMVGTAGPV 441
           +L+ +++  APL+ E+            VQ  YGLTE +C   T   P++    G A   
Sbjct: 304 KLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKG--HGIAKKN 361

Query: 442 SVYSELRLEEV----PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFH 496
           SV   L   EV    P+ G S   + P GE+CVR + +  GYY N + T  +I  DGW H
Sbjct: 362 SVGFILPNLEVKFIDPDTGRSLPKNTP-GELCVRSQCVMQGYYNNKEETDRTIDEDGWLH 420

Query: 497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 547
           TGDIG I  +G + I+DR K LIK  +G  VA   LE +    P +ED  V
Sbjct: 421 TGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAV 470

Length = 546

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 78.2 bits (193), Expect = 5e-15
 Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 8/106 (7%)

Query: 466 GEVCVRG---KTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKI 521
           GE+C++G   KT+F  YY +P  T + +  DGW HTGD G +   G    +DR+ N+IK 
Sbjct: 367 GEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKR 426

Query: 522 SQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLV-AVVVPCE 564
             GE V+   LEN+    P I+DI V G  DS++   + A VV  E
Sbjct: 427 G-GENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE 471

Length = 517

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 77.2 bits (190), Expect = 8e-15
 Identities = 99/354 (27%), Positives = 138/354 (38%), Gaps = 84/354 (23%)

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           P+ W   +    V++ +     P ++  I++TSGT   PKGV LTH   A  ++     L
Sbjct: 167 PFEW--LMRWFGVSDKD-----PEDVAVILFTSGTEKLPKGVPLTH---ANLLANQRACL 216

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
             F  K   DDV +SFLP  H        Y F                      L P LL
Sbjct: 217 KFFSPKE--DDVMMSFLPPFH-------AYGFNSCT------------------LFP-LL 248

Query: 317 AGVPRVF-------EKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 369
           +GVP VF       +KI E I +A           FD +       +    KQ    P  
Sbjct: 249 SGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYI-------LKTAKKQESCLP-- 299

Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGP----T 424
                          LR V+ GG      + +E L+      L QGYG TE C P     
Sbjct: 300 --------------SLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTE-CSPVITIN 344

Query: 425 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
           TV  P     VG   P+     + +  V E    P+     G V  RG +LFSGY    D
Sbjct: 345 TVNSPKHESCVGM--PIR---GMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGE-D 398

Query: 485 LTRESII---DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
             +  +    + W+ TGD+G +  +G + +  R    +KI   E V+LE LE++
Sbjct: 399 FGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIG-AEMVSLEALESI 451

Length = 539

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 77.3 bits (190), Expect = 8e-15
 Identities = 116/499 (23%), Positives = 186/499 (37%), Gaps = 79/499 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+   V +I   L   G   G  V     N  ++     AC  +  +  PL      
Sbjct: 55  SYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRE 114

Query: 138 GAVNFILDHAEIDFVFVQDKKVKEL--------LSPDCRSAQRLRVMVCFTSLTAEQKEM 189
             ++F+L+HA+   VFV     +          L         LR +V       +  + 
Sbjct: 115 RELSFMLNHADSK-VFVVPSVFRGFDHAAMARELQSK---LPALRQVVVIDGDGDDSFDR 170

Query: 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
            + T  +  + D    L          P P ++  ++YTSGT+G+PKGV+ T  T+    
Sbjct: 171 VLMTPERDDTPDAAAILAGPR------PSPDDVTQLIYTSGTTGEPKGVMHTANTL---F 221

Query: 250 SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLM 309
           S +  + ++ E  +   DV L   P+AH                 G+ +G        LM
Sbjct: 222 SNIHPYAERLE--LGGGDVILMASPMAHQ---------------TGFMYG--------LM 256

Query: 310 ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 369
              P +L     V + I    + A E +R                   + +       L 
Sbjct: 257 --MPLIL-NATAVLQDIWNPAR-AAELIRETG----------------VTFTMASTPFLT 296

Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 429
           DL    K        L   +  GAP+   + E       A +V  +G+TE  G  TV  P
Sbjct: 297 DLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTE-NGAVTVTEP 355

Query: 430 D---EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT 486
           D   E        P+    E+++ +      S  +    G + VRG + F GY K P L 
Sbjct: 356 DDALEKASTTDGRPLPGV-EVKVIDANGAKLSQGE---TGRLLVRGCSNFGGYLKRPHLN 411

Query: 487 RESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIW 546
                +GWF TGD+      G ++I  R K++I I  GE + +  +EN+    P +  + 
Sbjct: 412 STDA-EGWFDTGDLAFQDAEGYIRINGRSKDVI-IRGGENIPVVEIENLLYQHPAVAQVA 469

Query: 547 VYG---DSLKSMLVAVVVP 562
           +     + L     AVVVP
Sbjct: 470 IVAYPDERLGERACAVVVP 488

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 77.2 bits (190), Expect = 9e-15
 Identities = 60/187 (32%), Positives = 86/187 (45%), Gaps = 9/187 (4%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC----FPDEMCMVGTAGP 440
           LR + S  APL+ E  + L+    A +V  +G+TE     T             V + G 
Sbjct: 297 LRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGL 356

Query: 441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDI 500
           V   +  ++  V   G  PL     GEV +RG T+  GY  +P +T  +  DGW  TGD+
Sbjct: 357 VGRSTGAQIRIVGSDG-LPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDL 415

Query: 501 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLV- 557
           G +   G + I  R K LI    GE ++ E +E V    P + +  V+G  D L    V 
Sbjct: 416 GSLSAAGDLSIRGRIKELINRG-GEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVA 474

Query: 558 AVVVPCE 564
           AV+VP E
Sbjct: 475 AVIVPRE 481

Length = 534

>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional

 Score = 77.2 bits (190), Expect = 2e-14
 Identities = 126/649 (19%), Positives = 236/649 (36%), Gaps = 89/649 (13%)

Query: 42   NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPG 101
             +  +++  SV ++   R LG       + G   W TY  V     ++ S L A G  PG
Sbjct: 427  RSLGEMWERSVTRHSTFRCLG----QTSESGESEWLTYGTVDARARELGSGLLALGVRPG 482

Query: 102  CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPG-AVNFILDHAEIDFVFVQDKKVK 160
              +G+        V    AC       +PL   +G G  +  ++D  +I  VF     V 
Sbjct: 483  DVIGVDCEASRNIVILEVACALYGFTTLPL---VGKGSTMRTLIDEHKIKVVFADRNSVA 539

Query: 161  ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ-TGIKPYSWDEFLHLGKVNEMEILPPQP 219
             +L+  CRS ++L  +V   S   E      +   I    ++     G+   +  +P + 
Sbjct: 540  AILT--CRS-RKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGR---LCPVPLKE 593

Query: 220  FNICTIMYT-------SGTSGDPKGVVLTHETIATFVS---GVDLFLDQFEDKMTVDDVY 269
                  ++T       S +      V +TH  +   +S      +    F+  + V    
Sbjct: 594  HVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMV---- 649

Query: 270  LSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
              F P A + +RV     F  G++V     D   L+   ++ +PT+L   P +F      
Sbjct: 650  -HFTPFAMLFNRVFVLGLFAHGSAVATV--DAAHLQRAFVKFQPTILVAAPSLFSTSRLQ 706

Query: 330  IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
            + +A E    +   +F+  ++ +   +N+    R  S L   + FR  +  LGG +  ++
Sbjct: 707  LSRANERYSAVYSWLFERAFQLRSRLINI---HRRDSSLLRFIFFRATQELLGGCVEKIV 763

Query: 390  --SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL 447
                    S  + E + V C    ++      + G   V      C+ GT  P S+  +L
Sbjct: 764  LCVSEESTSFSLLEHISV-CYVPCLREVFFLPSEG---VF-----CVDGTPAP-SLQVDL 813

Query: 448  RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG 507
                       P D+P  G     G+ + +   K        I   W    D        
Sbjct: 814  E----------PFDEPSDGAGI--GQLVLA--KKGEPRRTLPIAAQW--KRD-------R 850

Query: 508  VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDT 567
             ++++     ++     EYV    LE ++  +  + DI++Y D  +  ++A+V P   DT
Sbjct: 851  TLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSRP-IIAIVSP-NRDT 908

Query: 568  KKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKG 627
             ++ +   H             Q   L   +  A  + ++ A+     F+ +     +  
Sbjct: 909  VEFEWRQSHCM---GEGGGPARQ---LGWTELVAYASSLLTAD-----FACIAKENGLHP 957

Query: 628  ------VILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAP 670
                  V L P  F      +T   K +R+ +  Y+   I++ Y  +  
Sbjct: 958  SNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVIERFYSDVET 1006

Length = 1452

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 76.1 bits (188), Expect = 2e-14
 Identities = 72/301 (23%), Positives = 115/301 (38%), Gaps = 94/301 (31%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH------I 278
            ++TSG++G PK V+ TH  +    + +        ++     V + +LP  H       
Sbjct: 169 YLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLTEE---PPVLVDWLPWNHTFGGNHN 225

Query: 279 LDRVIEE---YFFRRGASV-GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
            + V+      +   G  V G +   L  LR    E+ PT+   VP+ FE + +    AL
Sbjct: 226 FNMVLYNGGTLYIDDGKPVPGLFEETLRNLR----EVSPTVYFNVPKGFEMLVD----AL 277

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
           E    LRRR F                                      RLRL+   GA 
Sbjct: 278 ERDAALRRRFF-------------------------------------KRLRLLFYAGAA 300

Query: 395 LSTEVEEFL----------RVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMVGTAGPVSV 443
           L  +V + L          R+   +    G G TET    T   +P +      +G + +
Sbjct: 301 LPQDVWDRLQALAVRTTGERIPMTS----GLGATETAPTATFVHWPTDR-----SGVIGL 351

Query: 444 YS---ELRLEEVPEMG-YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498
            +   EL+L  VP  G           EV V+G  +  GY+++P+LT E+   +G++  G
Sbjct: 352 PAPGTELKL--VPNGGKL---------EVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIG 400

Query: 499 D 499
           D
Sbjct: 401 D 401

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 75.8 bits (187), Expect = 3e-14
 Identities = 24/57 (42%), Positives = 38/57 (66%)

Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           GE+ VR  +L  GY+  P+ T E++ DGW HTGDIG+I   G +  + R+K ++K++
Sbjct: 415 GEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVN 471

Length = 567

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 75.4 bits (186), Expect = 4e-14
 Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 21/123 (17%)

Query: 415 YGLTETCGPT-TVCFPDE-MCMVGTAGPVSVYSELRL-----EEVP--EMGYSPLDDPPC 465
           YG TE   P  TV  P+E +   G+AG   +  E R+      +V   E+G         
Sbjct: 319 YGQTEI-APLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEVG--------- 368

Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGE 525
            E+  R   L  GY+ +P+ T E+   GWFH+GD+G +   G + ++DRKK++IK + GE
Sbjct: 369 -EIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVVDRKKDMIK-TGGE 426

Query: 526 YVA 528
            VA
Sbjct: 427 NVA 429

Length = 523

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 75.3 bits (185), Expect = 4e-14
 Identities = 74/245 (30%), Positives = 108/245 (44%), Gaps = 47/245 (19%)

Query: 383 GRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-- 439
             L+ V  G APLS + +++F++       +QGYG+TE+              VGT G  
Sbjct: 319 KSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTA------------VGTRGFN 366

Query: 440 --PVSVYSELRLEEVPEMGYSPLD------DPP--CGEVCVRGKTLFSGYYKNPDLTRES 489
              +S YS + L   P M    +D       PP  CGE+ ++G  +  GY  NP  T+ +
Sbjct: 367 TEKLSKYSSVGLL-APNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQST 425

Query: 490 II-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY 548
           I  DGW  TGDI     +G + I+DR K +IK  +G  +A   LE V    P I D  V 
Sbjct: 426 IDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKY-KGFQIAPADLEAVLISHPEIIDAAVT 484

Query: 549 GDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNK 605
               K    + VA VV      ++        GS L   S   + NY+  ++    +  K
Sbjct: 485 AVPDKECGEIPVAFVV------RR-------QGSTL---SQEAVINYVAKQVAPYKKVRK 528

Query: 606 VIFAN 610
           V+F  
Sbjct: 529 VVFVQ 533

Length = 560

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 74.7 bits (184), Expect = 4e-14
 Identities = 92/354 (25%), Positives = 133/354 (37%), Gaps = 69/354 (19%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           ++YTSGT+G PKG +  H  +   + GV+L+ +         DV+ +    A I      
Sbjct: 93  LIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELA---PRPGDVFWTPADWAWI------ 143

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
                              L D L+   P L  GVP V                  R + 
Sbjct: 144 -----------------GGLLDVLL---PALYFGVPVV----------------AYRMQR 167

Query: 345 FDALYKYKLAWMNMGYKQREA--SPLADLLAFRKV---KARLGGRLRLVISGGAPLSTEV 399
           FD   +   A M   Y    A   P A L   R+V   +AR   RLR V SGG  L  E+
Sbjct: 168 FDP--ERAFALMRR-YGVTNAFLPPTA-LKMMRRVGSERARYDLRLRAVASGGESLGEEL 223

Query: 400 EEFLRVTCCAFLVQGYGLTETCGPTTVC---FPDEMCMVGTAGPVSVYSELRLEEVPEMG 456
            E+ R      + + YG TE       C    P     +G   P        +  V + G
Sbjct: 224 LEWARDELGLTVNEFYGQTEANLVVGNCAALGPARPGSMGKPVPGH-----EVAVVDDAG 278

Query: 457 YSPLDDPPCGEVCVR--GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDR 514
             P+     GE+ V+     +F GY+ NP+ T       W  TGD+G+   +G +    R
Sbjct: 279 -RPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAGDWLLTGDLGRRDADGYLWFKGR 337

Query: 515 KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLV-AVVVPCEE 565
             ++IK S G  +    +E      P + +  V G  D  +  +V A VV  E 
Sbjct: 338 ADDVIK-SSGYRIGPAEIEECLLKHPAVLEAAVVGVPDPERGEIVKAFVVLAEG 390

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 74.2 bits (183), Expect = 7e-14
 Identities = 55/223 (24%), Positives = 85/223 (38%), Gaps = 36/223 (16%)

Query: 78  TYKEVYEEVLQIVSAL-RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           +Y+E+ EE  ++   L +  G   G RV +Y  N PQ+V A  A    + + VP+     
Sbjct: 37  SYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNR 96

Query: 137 PGAVNFILDHAEIDFVFV-QD--KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
              +   +  +      V  +   KV   +        RLR ++           +  + 
Sbjct: 97  EEELAHYVTDSGARVAIVGSELAPKVAPAVG-----NLRLRHVIV----AQYSDYLPAEP 147

Query: 194 GIKPYSW-------DEFLHLGKVNEMEIL-----PP----QPFNICTIMYTSGTSGDPKG 237
            I   +W             G V   E L     PP     P ++  + YTSGT+G PKG
Sbjct: 148 EIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKG 207

Query: 238 VVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            + TH T+ A  V  V           T + V L+ LPL H+ 
Sbjct: 208 CMHTHRTVMANAVGSVLWS------NSTPESVVLAVLPLFHVT 244

Length = 546

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 72.3 bits (178), Expect = 3e-13
 Identities = 54/202 (26%), Positives = 83/202 (41%), Gaps = 35/202 (17%)

Query: 77  KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
            T+ E++E V+ +   L A G + G RV +   N  + +  + A   L  + V L   L 
Sbjct: 28  VTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLS 87

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
              + + LD AE+  +   D    + L P           V F  L    KE       +
Sbjct: 88  REELLWQLDDAEVKCLITDDDFEAK-LIPGIS--------VKFAELMNGPKE--EAEIQE 136

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
            +  DE                   + TIMYTSGT+G PKGV+ T+     + S V   L
Sbjct: 137 EFDLDE-------------------VATIMYTSGTTGKPKGVIQTYGN--HWWSAVGSAL 175

Query: 257 DQFEDKMTVDDVYLSFLPLAHI 278
           +     +T DD +L+ +P+ HI
Sbjct: 176 NL---GLTEDDCWLAAVPIFHI 194

Length = 483

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 71.5 bits (176), Expect = 4e-13
 Identities = 59/195 (30%), Positives = 90/195 (46%), Gaps = 28/195 (14%)

Query: 371 LLAFRKVKARLGGRLRLVISGGAPLSTEVEE---FLRVTCCAFLVQGYGLTETCGPTTVC 427
           L+A  +        LR V  GGA +S  + +    L +     + +GYGL+E     ++ 
Sbjct: 225 LVAAVEQGPLPPESLRFVAVGGARVSPSLLQRARALGLP----VYEGYGLSECASVVSLN 280

Query: 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487
            P      G+ G    + ++ +            D   GE+ VRG +L  GY   P  T 
Sbjct: 281 TPGAD-RPGSVGKPLPHVQVSIAN----------D---GEILVRG-SLMLGYLGEPPAT- 324

Query: 488 ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 547
               D W+ TGD+G +   G + I  RKKNLI  S G  V+ E++E+    AP I    V
Sbjct: 325 ----DDWWATGDLGHLDEEGYLYINGRKKNLIITSFGRNVSPEWVESELQQAPAIAQAVV 380

Query: 548 YGDSLKSMLVAVVVP 562
           +GD+ +  LVA++VP
Sbjct: 381 FGDA-QPFLVALIVP 394

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 71.5 bits (176), Expect = 5e-13
 Identities = 48/165 (29%), Positives = 62/165 (37%), Gaps = 51/165 (30%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+  EV ++ S L A G   G RVGIY    P+ V A+ A   +  I VP++   GP
Sbjct: 9   TYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGFGP 68

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
            AV   L  AE   +   D                                         
Sbjct: 69  DAVATRLQDAEAKVLITADG---------------------------------------- 88

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
                FL  GK  +++  P        I+YTSGT+G PKG V TH
Sbjct: 89  -----FLRRGKRVDLKDDP------AMIIYTSGTTGKPKGTVHTH 122

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 69.6 bits (171), Expect = 3e-12
 Identities = 57/170 (33%), Positives = 77/170 (45%), Gaps = 33/170 (19%)

Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 429
           D LA   +  R    LR +  GGA +   V E L+       V+GYGLTET   T    P
Sbjct: 292 DFLASPGLAERDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPP 351

Query: 430 DE---MCM-VGTAG-------PVSVYSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLF 476
           D     C+ + T G       P +      LEE+P  E+G          E+ V G  +F
Sbjct: 352 DRPKLQCLGIPTFGVDARVIDPET------LEELPPGEVG----------EIVVHGPQVF 395

Query: 477 SGYYKNPDLTRESII--DG--WFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
            GY+  P+ T E+ I  DG  +F TGD+G++   G   I DR K +I  S
Sbjct: 396 KGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINAS 445

Length = 546

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 69.5 bits (171), Expect = 3e-12
 Identities = 52/191 (27%), Positives = 77/191 (40%), Gaps = 34/191 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYDT 134
           TY+E  EEV  +   L A G E G RVGI+  N P+WV    A   +  I V   P Y  
Sbjct: 45  TYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRL 104

Query: 135 LGPGAVNFILDHAEIDFVFVQDK--------KVKELLSPDCRSAQRLRVMVCFTSLTAEQ 186
                + + L+ +    +   D          + EL  P+  + +  +       L + +
Sbjct: 105 ---SELEYALNQSGCKALIAADGFKDSDYVAMLYELA-PELATCEPGQ-------LQSAR 153

Query: 187 K---EMAVQTGIKP----YSWDEFLHLGKVNEMEILPP-----QPFNICTIMYTSGTSGD 234
                  +  G +      ++DE L LG+  +   L        P +   I YTSGT+G 
Sbjct: 154 LPELRRVIFLGDEKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGF 213

Query: 235 PKGVVLTHETI 245
           PKG  LTH  I
Sbjct: 214 PKGATLTHRNI 224

Length = 559

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 68.1 bits (167), Expect = 7e-12
 Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 36/201 (17%)

Query: 385 LRLVISGGAPLS-TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC-----MVGTA 438
           L  V  G +P+S   + E +      F  Q YG TE     T     +        + + 
Sbjct: 283 LETVYYGASPMSPVRLAEAIERFGPIF-AQYYGQTEAPMVITYLRKRDHDPDDPKRLTSC 341

Query: 439 GPVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG 493
           G  +    + L      EV         +   GE+CVRG  +  GY+  P+ T E+  DG
Sbjct: 342 GRPTPGLRVALLDEDGREVA------QGEV--GEICVRGPLVMDGYWNRPEETAEAFRDG 393

Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY---------CVAPIIED 544
           W HTGD+ +   +G   I+DRKK++I ++ G  V    +E+V           V  + ++
Sbjct: 394 WLHTGDVAREDEDGFYYIVDRKKDMI-VTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDE 452

Query: 545 IWVYGDSLKSMLVAVVVPCEE 565
            W  G+++     AVVV    
Sbjct: 453 KW--GEAVT----AVVVLRPG 467

Length = 524

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 67.5 bits (166), Expect = 1e-11
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 10/72 (13%)

Query: 466 GEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG 524
           GE+C RG ++  GY+ +P+ T E+I  DGW HTGD+  +   G V I+ R K++I I  G
Sbjct: 399 GELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMI-IRGG 457

Query: 525 EYVALEYLENVY 536
                   EN+Y
Sbjct: 458 --------ENIY 461

Length = 559

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 67.1 bits (164), Expect = 1e-11
 Identities = 99/395 (25%), Positives = 151/395 (38%), Gaps = 94/395 (23%)

Query: 215 LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP 274
           L    F     MYTSGT+G PKGV +    +A F + +   +D     +  DDV+ +   
Sbjct: 86  LDDDLF---AQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAID-----LRDDDVFWN--- 134

Query: 275 LAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
                            A  G+ +G   A+        P L  G+  VF    EG   A 
Sbjct: 135 ----------------IADPGWAYGLYYAI------TGP-LAMGITTVF---LEGGFTA- 167

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKA-------RLGGRLRL 387
                     +D L +  +   N        SP A    +R + A       R+  +LR+
Sbjct: 168 -------ENTYDVLERLGVT--NFAG-----SPTA----YRMLMAAGADAAARIKLKLRV 209

Query: 388 VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG----PVSV 443
             S G PL+ EV  + +      +   YG TET     V     +     AG    P+  
Sbjct: 210 ASSAGEPLNPEVVRWFQANLGVTIHDHYGQTET--GMPVGNHHALAHEVRAGSMGLPLPG 267

Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKT----LFSGYYKNPDLTRESIIDGWFHTGD 499
           Y    L++  +    PL D   G++ +   +     FSGY+ +P+ T E I   W+ TGD
Sbjct: 268 YRIAVLDDDGQ----PLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELIAGRWYVTGD 323

Query: 500 IGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLV 557
           + +   +G    I R  ++I IS G  +    +E+     P + +  V G  D L+  +V
Sbjct: 324 LVERDEDGYFWFIGRADDVI-ISAGYRIGPFDVESALLEHPAVAEAAVVGVPDPLRGEIV 382

Query: 558 -AVVVPCEEDTKKWAYSNGHAGS---FLELCSLVQ 588
            A VV             G+AGS     EL   V+
Sbjct: 383 KAFVV----------LKEGYAGSDELAEELQLFVK 407

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 65.2 bits (159), Expect = 5e-11
 Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 28/180 (15%)

Query: 383 GRLRLVISGGAPLSTE-----VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV-- 435
             L  + +GGAP + E     +++ + +        G+G++E    T      +  ++  
Sbjct: 252 RHLTALFTGGAPHAAEDILGWLDDGIPMVD------GFGMSE--AGTVFGMSVDCDVIRA 303

Query: 436 --GTAGPVSVYSELRLEEVPEMGYSPLDDPPCG---EVCVRGKTLFSGYYKNPDLTRESI 490
             G AG  +   + R+  V + G    +D P G   E+ +RG  L  GY++ P  T  + 
Sbjct: 304 KAGAAGIPTPTVQTRV--VDDQG----NDCPAGVPGELLLRGPNLSPGYWRRPQATARAF 357

Query: 491 I-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
             DGWF TGDI +   +G   ++DRKK++  IS GE V    +E V    P I +  V G
Sbjct: 358 TGDGWFRTGDIARRDADGFFWVVDRKKDMF-ISGGENVYPAEIEAVLADHPGIRECAVVG 416

Length = 488

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 64.8 bits (158), Expect = 6e-11
 Identities = 93/460 (20%), Positives = 140/460 (30%), Gaps = 106/460 (23%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +  E+   V ++ + L A G   G RV ++  NC +WV    AC  L    + +      
Sbjct: 37  SRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRS 96

Query: 138 GAVNFILDHAEIDFVFVQDK-------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA 190
             V  IL      ++ V           +   + PD     R   +V   +         
Sbjct: 97  HEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPG 156

Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYT-SGTSGDPKGV------VLTHE 243
            +  +        L                +   +++T SGT+  PK V      +L H 
Sbjct: 157 ARVQLFA------LPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHA 210

Query: 244 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNA 303
                  G D              V L+ LP                G   G+       
Sbjct: 211 RAIARAYGYD-----------PGAVLLAALPFC--------------GV-FGF------- 237

Query: 304 LRDDLMELKPTLLAGVPRVFEKIHEGIK--KALEELR--------PLRRRIFDALYKYKL 353
                  L   L  G P V E + +  +  +AL   R         + RRI D       
Sbjct: 238 -----STLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA----- 287

Query: 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL-----STEVEEFLRVTCC 408
                   +R   P A L  F      LG    L  + G PL     S+EV+  +     
Sbjct: 288 -------GERADFPSARLFGFASFAPALGELAALARARGVPLTGLYGSSEVQALV----- 335

Query: 409 AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEV 468
                         P T      +      G      E R+        + L D   GE+
Sbjct: 336 -----------ALQPATDPVSVRI----EGGGRPASPEARVRARDPQDGALLPDGESGEI 380

Query: 469 CVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNG 507
            +R  +L  GY  NPD T  ++  DG+F TGD+G    +G
Sbjct: 381 EIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDG 420

Length = 540

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 65.0 bits (159), Expect = 9e-11
 Identities = 56/195 (28%), Positives = 80/195 (41%), Gaps = 42/195 (21%)

Query: 385  LRLVISGGAPLSTEVEEF------LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA 438
            LR V +G   +  E  +       +R+      ++GYG+TET  P            GT 
Sbjct: 909  LRYVFAGAEKVKEETRQTWMEKFGIRI------LEGYGVTET-APVIALNTPMHNKAGTV 961

Query: 439  GPVSVYSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYK--NPDLTRESIIDGW 494
            G +    E RLE VP  + G         G + VRG  +  GY +  NP    E   DGW
Sbjct: 962  GRLLPGIEYRLEPVPGIDEG---------GRLFVRGPNVMLGYLRAENPG-VLEPPADGW 1011

Query: 495  FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS 554
            + TGDI  I   G + I  R K   KI+ GE ++L  +E       +  ++W        
Sbjct: 1012 YDTGDIVTIDEEGFITIKGRAKRFAKIA-GEMISLAAVEE------LAAELWPDALH--- 1061

Query: 555  MLVAVVVPCEEDTKK 569
               AV +P   D +K
Sbjct: 1062 --AAVSIP---DARK 1071

Length = 1140

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 63.8 bits (156), Expect = 1e-10
 Identities = 48/212 (22%), Positives = 73/212 (34%), Gaps = 28/212 (13%)

Query: 75  VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDT 134
             +T+ E Y    ++ SAL   G   G  V +   N P  VEA         +   L   
Sbjct: 42  RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTR 101

Query: 135 LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK------- 187
           L   ++ F+L H E   + V D +  E+           + +V                 
Sbjct: 102 LDAASIAFMLRHGEAKVLIV-DTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGAL 160

Query: 188 --EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI 245
             E  + +G   ++W              LP   ++   + YTSGT+G+PKGVV  H   
Sbjct: 161 DYEAFLASGDPDFAW-------------TLPADEWDAIALNYTSGTTGNPKGVVYHHRGA 207

Query: 246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
                      +     M    VYL  LP+ H
Sbjct: 208 YLNALS-----NILAWGMPKHPVYLWTLPMFH 234

Length = 545

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 64.3 bits (157), Expect = 1e-10
 Identities = 89/365 (24%), Positives = 136/365 (37%), Gaps = 75/365 (20%)

Query: 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF 259
           W + L   +  E       P ++  +++TSGTSGDPK V  TH  +A   +GV L   +F
Sbjct: 132 WADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVA--SAGVML-AQRF 188

Query: 260 EDKMTVDDV-YLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG 318
              +  DDV Y+S +PL                     +H   NA+   +      L AG
Sbjct: 189 G--LGPDDVCYVS-MPL---------------------FHS--NAV---MAGWAVALAAG 219

Query: 319 VPRVFEKIHEGIKKALEELRPLRRRIFDA------LYKYKLAWMNMGYKQREASPLADLL 372
                                LRR+ F A      + +Y   + N   K     PL+ +L
Sbjct: 220 ASIA-----------------LRRK-FSASGFLPDVRRYGATYANYVGK-----PLSYVL 256

Query: 373 AFRKVKARLGGRLRLVISG-GAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD- 430
           A  +        LR+V    GAP   ++  F R   C  +V G+G TE  G      PD 
Sbjct: 257 ATPERPDDADNPLRIVYGNEGAP--GDIARFARRFGCV-VVDGFGSTEG-GVAITRTPDT 312

Query: 431 -EMCMVGTAGPVSVYSELRLEEVP----EMGYSPLDDPPCGE-VCVRGKTLFSGYYKNPD 484
               +      V++       E P      G     D   GE V   G   F GYY +P+
Sbjct: 313 PPGALGPLPPGVAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPE 372

Query: 485 LTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
              E +  G + +GD+     +G      R  + +++  GE +    +E +    P   +
Sbjct: 373 ADAERMRGGVYWSGDLAYRDADGYAYFAGRLGDWMRVD-GENLGTAPIERILLRYPDATE 431

Query: 545 IWVYG 549
           + VY 
Sbjct: 432 VAVYA 436

Length = 529

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 64.1 bits (157), Expect = 1e-10
 Identities = 38/199 (19%), Positives = 64/199 (32%), Gaps = 35/199 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E   ++   LRA G  PG  V +     P+ V A+ A        VPL      
Sbjct: 14  TYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYPA 73

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + F+L+ +    +   +                   +V        +           
Sbjct: 74  ERLAFMLEDSGARVLLTDESLAPLA-------RADQLPLVILEEELDAEDAGPPA----- 121

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                                  ++  +MYTSG++G PKGV + H  +   V   + ++ 
Sbjct: 122 -----------------PAVDADDLAYVMYTSGSTGRPKGVAVPHRGVVRLVRNTN-YIA 163

Query: 258 QFEDKMTVDDVYLSFLPLA 276
                   DD +L   PL+
Sbjct: 164 LDP-----DDRFLQLSPLS 177

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 64.4 bits (157), Expect = 2e-10
 Identities = 112/520 (21%), Positives = 177/520 (34%), Gaps = 133/520 (25%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+  +  ++   L A+G  P   VGI      + V  + A        VPL      
Sbjct: 539 SYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQ 598

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + ++LD + +  +  Q   + +L  P       LR +     L      +   +G  P
Sbjct: 599 DRLAYMLDDSGVRLLLTQSHLLAQLPVPA-----GLRSLC----LDEPADLLCGYSGHNP 649

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                            +   P N+  ++YTSG++G PKGV ++H  +A +V  +   L 
Sbjct: 650 E----------------VALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQ 693

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASV---GY-YHGDLNALRDDLMEL 311
                +  DD  L     A   D  + E F     GA++         D  A    + + 
Sbjct: 694 -----LAADDSMLMVSTFA--FDLGVTELFGALASGATLHLLPPDCARDAEAFAALMADQ 746

Query: 312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL 371
             T+L  VP   + + +     +   RP R  +                   EA  + DL
Sbjct: 747 GVTVLKIVPSHLQALLQA--SRVALPRPQRALVCGG----------------EALQV-DL 787

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
           LA R      G R                          L+  YG TE    TTV     
Sbjct: 788 LA-RVRALGPGAR--------------------------LINHYGPTE----TTV----- 811

Query: 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP--------------PC-----GEVCVRG 472
                         EL  EE    G  P+  P              P      GE+ + G
Sbjct: 812 ---------GVSTYELSDEERD-FGNVPIGQPLANLGLYILDHYLNPVPVGVVGELYIGG 861

Query: 473 KTLFSGYYKNPDLTRESII------DG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQG 524
             L  GY++ P LT E  +      DG   + TGD+ +   +GV++ + R  + +KI +G
Sbjct: 862 AGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKI-RG 920

Query: 525 EYVALEYLENVYCVAPIIEDIWV--YGDSLKSMLVAVVVP 562
             + L  +E      P + +  V          LVA +VP
Sbjct: 921 FRIELGEIEARLLAQPGVREAVVLAQPGDAGLQLVAYLVP 960

Length = 3956

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 63.3 bits (154), Expect = 2e-10
 Identities = 105/458 (22%), Positives = 167/458 (36%), Gaps = 78/458 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+  +V ++ +ALR  G +   RV +   +   +  A        ++ V L   L  
Sbjct: 32  SYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTA 91

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               ++L+ +    VFV   ++  ++      +  L   V      A + ++A       
Sbjct: 92  DDYAYMLEDSRARVVFVS-GELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLA------- 143

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI---ATFVSGVDL 254
               E L      + +    Q  +    +Y+SG++G PKGVV TH      A   +   L
Sbjct: 144 ----ELLATE-SEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL 198

Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPT 314
            + +       DDV  S   L           FF  G          NAL         T
Sbjct: 199 GIRE-------DDVVFSAAKL-----------FFAYGLG--------NAL---------T 223

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK---LAWMNMGYKQREASPLADL 371
               V         G    L   RP    +FD L +++      +   Y        A +
Sbjct: 224 FPMSV---------GATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLY--------AAM 266

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
           LA   + A    RLRL  S G  L  EV +  +      +V G G TE         P +
Sbjct: 267 LADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGD 326

Query: 432 MCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI 490
           +   GT+G PV  Y   RL  V + G       P GE+ + G +  + Y+ N   TR++ 
Sbjct: 327 V-RYGTSGKPVPGY---RLRLVGDGGQDVAAGEP-GELLISGPSSATMYWNNRAKTRDTF 381

Query: 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
              W  +GD      +G      R  +++K+S G YV+
Sbjct: 382 QGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVS-GIYVS 418

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 62.6 bits (153), Expect = 4e-10
 Identities = 69/302 (22%), Positives = 108/302 (35%), Gaps = 96/302 (31%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH------I 278
            ++TSG++G PK V+ TH  +      +        ++     V + +LP  H       
Sbjct: 214 FLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEE---PPVLVDWLPWNHTFGGNHN 270

Query: 279 LDRVIEEYFFRRGASVGYYHGD---LNALRD----DLMELKPTLLAGVPRVFEKIHEGIK 331
           L  V+       G +   Y  D        D    +L E+ PT+   VP+ +E     + 
Sbjct: 271 LGIVL-----YNGGT--LYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWE----MLV 319

Query: 332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISG 391
            ALE    LRRR F                                      RL+L+   
Sbjct: 320 PALERDAALRRRFF-------------------------------------SRLKLLFYA 342

Query: 392 GAPLSTEVEEFL----------RVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMVGTAGP 440
           GA LS +V + L          R+        G G+TET    T    P        AG 
Sbjct: 343 GAALSQDVWDRLDRVAEATCGERIRMMT----GLGMTETAPSATFTTGPLSR-----AGN 393

Query: 441 VSVYSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHT 497
           + +         P  E+   P+      EV V+G  +  GY++ P+LT E+  + G++ +
Sbjct: 394 IGL-------PAPGCEVKLVPVGGKL--EVRVKGPNVTPGYWRAPELTAEAFDEEGYYRS 444

Query: 498 GD 499
           GD
Sbjct: 445 GD 446

Length = 614

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 62.6 bits (153), Expect = 4e-10
 Identities = 53/173 (30%), Positives = 74/173 (42%), Gaps = 38/173 (21%)

Query: 385  LRLVISGGAPLSTEVEEFLRVTCCAF-------LVQGYGLTETCGPTTVCFPDEMC---- 433
            LRLV++G   L  EV +       AF       +++GYG TET    +V  PD +     
Sbjct: 900  LRLVVAGAEKLKPEVAD-------AFEEKFGIRILEGYGATETSPVASVNLPDVLAADFK 952

Query: 434  --------MVGTAGP-VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
                     VG   P V+V    R+  V    +  L     G + + G  +  GY  +P+
Sbjct: 953  RQTGSKEGSVGMPLPGVAV----RI--VDPETFEELPPGEDGLILIGGPQVMKGYLGDPE 1006

Query: 485  LTRESIID----GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLE 533
             T E I D    GW+ TGD G +  +G + I DR     KI  GE V L  +E
Sbjct: 1007 KTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIG-GEMVPLGAVE 1058

Length = 1146

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 61.8 bits (151), Expect = 4e-10
 Identities = 54/202 (26%), Positives = 79/202 (39%), Gaps = 31/202 (15%)

Query: 383 GRLRL-VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-P 440
           GR  L  + GG  L  ++ E L  T    L   YG TET   +T           T G P
Sbjct: 205 GRESLTALCGGEALPRDLAERLLSTGAE-LWNMYGPTETTIWSTCARVTAADGPVTIGRP 263

Query: 441 V---SVY---SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG- 493
           +    VY    +L+   VP  G         GE+ + G  +  GY   P+LT E  +   
Sbjct: 264 IANTQVYVLDEDLQP--VPP-GV-------PGELYIGGDGVARGYLGRPELTAERFVPDP 313

Query: 494 -------WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIW 546
                   + TGD+ +  P+G ++ + R  + +KI +G  + L  +E      P + D  
Sbjct: 314 FDDPGGRLYRTGDLVRWRPDGRLEYLGRADDQVKI-RGFRIELGEIEAALRAHPGVADAV 372

Query: 547 VY---GDSLKSMLVAVVVPCEE 565
           V           LVA VVP   
Sbjct: 373 VVVREEGPGDQRLVAYVVPKAG 394

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 61.4 bits (149), Expect = 7e-10
 Identities = 66/235 (28%), Positives = 98/235 (41%), Gaps = 26/235 (11%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
           L  V   GA +   V E +        V  YG TE      +  P      GT      +
Sbjct: 271 LEHVTFAGATMPDAVLERVNQHLPGEKVNIYGTTEAMNSLYMRDPRT----GTEMRPGFF 326

Query: 445 SELRLEEVPEMGYSPLDDPPCGEVCV-RGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI 503
           SE+R+  +       L +   GE+ V      F+GY   P  T E + DGW+ T D+  +
Sbjct: 327 SEVRIVRIGGSPDEALPNGEEGELVVAAADATFTGYLNQPQATAEKLQDGWYRTSDVAVV 386

Query: 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVV 560
            P+G V+I+ R  ++I IS GE +    +E V   AP + ++ V G   +     + A V
Sbjct: 387 DPSGTVRILGRVDDMI-ISGGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQSVTACV 445

Query: 561 VPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY-------ILSEL-KNAAERNKVI 607
           VP E +T         A +    C   +L ++        L EL KNA   NKV+
Sbjct: 446 VPREGETLS-------ADALDTFCRASELADFKRPRRYFFLDELPKNAM--NKVL 491

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 61.3 bits (149), Expect = 9e-10
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 4/77 (5%)

Query: 459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNL 518
           P D    G++ VRG  +   Y++        ++DGWF TGD+  I  +G ++I DR K++
Sbjct: 378 PWDGKAFGDLQVRGPWVIDRYFRGDA---SPLVDGWFPTGDVATIDADGFMQITDRSKDV 434

Query: 519 IKISQGEYVALEYLENV 535
           IK S GE+++   +ENV
Sbjct: 435 IK-SGGEWISSIDIENV 450

Length = 539

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 59.6 bits (145), Expect = 3e-09
 Identities = 52/218 (23%), Positives = 83/218 (38%), Gaps = 40/218 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+++++EV  +   LRA G +   R+ +   N   WV A  AC    ++C+P+      
Sbjct: 4   SYQQLWQEVDLLAEQLRALGVK---RIALALDNSIDWVIADLACLQAGIVCIPIPHFFSA 60

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                +L+ A  D +   D        PD  SA                      T    
Sbjct: 61  QQTQHLLNDAGADLLISDD--------PDAASALH--------------------TPFAT 92

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
              D ++ L            P     I YTSG++G PKGV L+   + T    V   L 
Sbjct: 93  LGEDLYIALRPSAN---PVELPAGTAKITYTSGSTGQPKGVCLSAAALET----VAQSLA 145

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASV 294
           +    +   + +L  LPLA +L+ +   Y     GA+V
Sbjct: 146 EAIA-ILEPERHLCLLPLATLLENIAGVYAPLLMGATV 182

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 58.6 bits (142), Expect = 5e-09
 Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 14/166 (8%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF-----PDEMCMVGTAG 439
           L+L+  GGA  S      +       L Q +G+ E      V +     P E+       
Sbjct: 300 LKLLQVGGAKFSAAAARRVPAVFGCQLQQVFGMAEG----LVNYTRLDDPAEIIFTTQGR 355

Query: 440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498
           P+S   E+R+  V + G +P+     G +  RG   F GYYK P+    +   +G+++TG
Sbjct: 356 PMSPDDEVRV--VDDHG-NPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTG 412

Query: 499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
           D+ ++ P G + ++ R K+ I    GE +A E +EN+    P + D
Sbjct: 413 DLVRLTPEGYIVVVGRAKDQIN-RGGEKIAAEEIENLLLAHPAVHD 457

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 58.0 bits (141), Expect = 9e-09
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 8/123 (6%)

Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDG-----WFHTGDIGQILPNGVVKIIDRKKNLIK 520
           GE+ + G  +  GY+ +P+LT E  I        + TGD+G+  P+G ++ + R  + +K
Sbjct: 327 GELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGRADHQVK 386

Query: 521 ISQGEYVALEYLENVYCVAPIIED--IWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAG 578
           I  G  V L  +E      P ++   + V GD     L A VV  +      A       
Sbjct: 387 IR-GYRVELGEIEAALARHPGVQRAVVVVVGDGGAKALAAFVVAEDGAAVDAAVLRAALA 445

Query: 579 SFL 581
             L
Sbjct: 446 ELL 448

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 58.0 bits (141), Expect = 9e-09
 Identities = 47/197 (23%), Positives = 80/197 (40%), Gaps = 28/197 (14%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E   ++   L A G  PG  VGIY  N  ++VEAM        + V +      
Sbjct: 30  TYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYVE 89

Query: 138 GAVNFILDHAEIDFVFVQDK---KVKELLSPDCRSAQRLRVMVCF-TSLTAEQKEMAVQT 193
             + ++LD ++   +  + +   +V E+L        +LR +V        +    AV  
Sbjct: 90  DELRYLLDDSDAVALVYEREFAPRVAEVLP----RLPKLRTLVVVEDGSGNDLLPGAV-- 143

Query: 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
                 +++ L  G   E +     P ++  ++YT GT+G PKGV+   E         D
Sbjct: 144 -----DYEDALAAGS-PERDFGERSPDDL-YLLYTGGTTGMPKGVMWRQE---------D 187

Query: 254 LFLDQFE--DKMTVDDV 268
           +F       D  T + +
Sbjct: 188 IFRVLLGGRDFATGEPI 204

Length = 533

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 57.7 bits (140), Expect = 1e-08
 Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 43/186 (23%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY ++ + + + + A  A G   G  V +   N P+ + A+ A     L    L+    P
Sbjct: 39  TYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALH----P 94

Query: 138 -GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
            G+++   DHA +    ++D  +  L+       +R   ++            A    +K
Sbjct: 95  LGSLD---DHAYV----LEDAGISTLIVDPAPFVERALALL------------ARVPSLK 135

Query: 197 PYSWDEFLHLGKVNEMEIL-------PPQPF-------NICTIMYTSGTSGDPKGVVLTH 242
                  L LG V +   L        P P        +I  + YT GT+G PKGV+ TH
Sbjct: 136 -----HVLTLGPVPDGVDLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTH 190

Query: 243 ETIATF 248
            +IAT 
Sbjct: 191 RSIATM 196

Length = 524

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 57.6 bits (140), Expect = 1e-08
 Identities = 34/165 (20%), Positives = 54/165 (32%), Gaps = 30/165 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+      I +ALRA+G  PG  V +      + + A+          VP+      
Sbjct: 14  TYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQPA 73

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                IL  A    V       +         A  L V+                     
Sbjct: 74  ERRAAILARAGARAVLTDPGLAQP------EEAPDLLVVAD------------------- 108

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
              D                 P ++  +++TSG++G+PKGV++TH
Sbjct: 109 ---DAAAAESP--APPPPRVDPDDLAYVIFTSGSTGEPKGVMITH 148

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 57.1 bits (137), Expect = 2e-08
 Identities = 95/489 (19%), Positives = 152/489 (31%), Gaps = 87/489 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA-MEACNALSLICVPLYDTLG 136
           TY EVY+   +++  LRA G   G RV   G N  + +EA        +++       L 
Sbjct: 26  TYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHT-ANPRLS 84

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
           P  + +IL+HAE   +         LL            +          +        K
Sbjct: 85  PKEIAYILNHAEDKVLLFD----PNLLPL---VEAIRGELKTVQHFVVMDE--------K 129

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
                         E + +       C + YT+GT+G PKGVV +H  +        L  
Sbjct: 130 APEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVD 189

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR---------DD 307
                +     V L  +P+ H+         +    +                     + 
Sbjct: 190 GTALSEKD---VVLPVVPMFHVNAWC---LPY----AATLVGAKQVLPGPRLDPASLVEL 239

Query: 308 LMELKPTLLAGVPRVFEKI---HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE 364
                 T  AGVP V+  +    E                     K     +  G     
Sbjct: 240 FDGEGVTFTAGVPTVWLALADYLESTGHR---------------LKTLRRLVVGG----- 279

Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC--G 422
           ++    L+A  +        + +    G    TE                  +       
Sbjct: 280 SAAPRSLIARFER-----MGVEVRQGYGL---TET---------------SPVVVQNFVK 316

Query: 423 PTTVCFPDEMCM-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
                  +E  + +     + +          E    P D    GEV ++G  +  GYY 
Sbjct: 317 SHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYG 376

Query: 482 NPDLTR-ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           N + TR     DG+F TGDI      G V+I DR K+LIK   GE+++   LEN     P
Sbjct: 377 NEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSG-GEWISSVDLENALMGHP 435

Query: 541 IIEDIWVYG 549
            +++  V  
Sbjct: 436 KVKEAAVVA 444

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 57.7 bits (139), Expect = 2e-08
 Identities = 106/468 (22%), Positives = 166/468 (35%), Gaps = 112/468 (23%)

Query: 78   TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
            TY E+     ++  AL A G  P   VGI          AME   +  ++ V L   L  
Sbjct: 4578 TYAELNRRANRLAHALIARGVGPEVLVGI----------AME--RSAEMM-VGLLAVLKA 4624

Query: 138  GAVNFILDHAEIDF------VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
            G     LD    ++        ++D     LL+      QRL +     SL  ++ E   
Sbjct: 4625 GGAYVPLD---PEYPRERLAYMMEDSGAALLLT-QSHLLQRLPIPDGLASLALDRDE--- 4677

Query: 192  QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
                    W+     G       +   P N+  ++YTSG++G PKGV ++H +    V+ 
Sbjct: 4678 -------DWE-----GFPAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGS---LVNH 4722

Query: 252  VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASVGYYHGDLNALRDDLM 309
            +    +++E  +T DD  L F+  +   D   E  +     GASV         +RDD +
Sbjct: 4723 LHATGERYE--LTPDDRVLQFMSFS--FDGSHEGLYHPLINGASV--------VIRDDSL 4770

Query: 310  ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 369
                 L A       +IHE           +   +F  +Y  +LA          A    
Sbjct: 4771 WDPERLYA-------EIHE---------HRVTVLVFPPVYLQQLA--------EHAERDG 4806

Query: 370  DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET--------C 421
            +  + R               G A      +   R     +L  GYG TET         
Sbjct: 4807 EPPSLRVY----------CFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKA 4856

Query: 422  GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
                 C    M +    G  S Y       V +   +PL     GE+ + G+ +  GY +
Sbjct: 4857 RDGDACGAAYMPIGTPLGNRSGY-------VLDGQLNPLPVGVAGELYLGGEGVARGYLE 4909

Query: 482  NPDLTRESIIDGWF--------HTGDIGQILPNGVVKIIDRKKNLIKI 521
             P LT E  +   F         TGD+ +   +GV+  + R  + +KI
Sbjct: 4910 RPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKI 4957

Length = 5163

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 56.6 bits (137), Expect = 3e-08
 Identities = 55/222 (24%), Positives = 81/222 (36%), Gaps = 49/222 (22%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G   W T++E+   V  + +AL A G   G R+ ++  NC Q  E+M A   L  + VP 
Sbjct: 29  GDRSW-TWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVP- 86

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL--------- 182
                    NF     E+ ++                 A   R M+C             
Sbjct: 87  --------TNFRQTPDEVAYL---------------AEASGARAMICHADFPEHAAAVRA 123

Query: 183 TAEQKEMAVQTGIKPY--SWDEFL--HLG-KVNEMEILPPQPFNICTIMYTSGTSGDPKG 237
            +      V  G       ++  +  HLG +V    +    P   C   +TSGT+G PK 
Sbjct: 124 ASPDLTHVVAIGGARAGLDYEALVARHLGARVANAAVDHDDP---CWFFFTSGTTGRPKA 180

Query: 238 VVLTHETIATFVSG--VDLFLDQFEDKMTVDDVYLSFLPLAH 277
            VLTH  +A  ++    DL         T  D  L   PL+H
Sbjct: 181 AVLTHGQMAFVITNHLADLMPG-----TTEQDASLVVAPLSH 217

Length = 528

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 56.0 bits (136), Expect = 4e-08
 Identities = 52/208 (25%), Positives = 77/208 (37%), Gaps = 40/208 (19%)

Query: 385 LRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTT--VCFP-DEMCMVGTAGP 440
           LR ++ GG  LS   V   L       L+ GYG TE    TT   C     +     + P
Sbjct: 242 LRQLLVGGDVLSPAHVRRVLAACPGLRLINGYGPTEN---TTFSTCHVITRLDEAADSIP 298

Query: 441 V-------SVY---SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI 490
           +       +VY    E +   +   G          E+ V G  L  GY   P+LT E  
Sbjct: 299 IGRPIPNTTVYILDEEGQPVPIGVPG----------ELYVGGDGLALGYLNRPELTAERF 348

Query: 491 ID-----G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 543
           +      G   + TGD+ +  P+G ++ + R    +KI +G  + L  +E      P + 
Sbjct: 349 VPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDRQVKI-RGFRIELGEIEQALLQHPGVR 407

Query: 544 DIWV----YGDSLKSMLVAVVVPCEEDT 567
           +  V         K  LVA VV      
Sbjct: 408 EAAVLVREDAAGDKR-LVAYVVARGALD 434

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 56.9 bits (137), Expect = 4e-08
 Identities = 70/317 (22%), Positives = 116/317 (36%), Gaps = 66/317 (20%)

Query: 219  PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
              N+  ++YTSG++G PKGV ++H  +                +++  D  L F+  +  
Sbjct: 2145 GENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAA-----GERYELSPADCELQFMSFS-- 2197

Query: 279  LDRVIEEYF--FRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
             D   E++F     GA V         +RDD +     L   + R       G+      
Sbjct: 2198 FDGAHEQWFHPLLNGARV--------LIRDDELWDPEQLYDEMER------HGVTIL--- 2240

Query: 337  LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
                    F  +Y  +LA     + +R+  P A               +R+   GG  + 
Sbjct: 2241 -------DFPPVYLQQLA----EHAERDGRPPA---------------VRVYCFGGEAVP 2274

Query: 397  TE-VEEFLRVTCCAFLVQGYGLTETCGPTTV--CFPDEMCMVGTAG-PVSVYSELRLEEV 452
               +          +L  GYG TE      +  C P + C  G A  P+      R   +
Sbjct: 2275 AASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPC--GAAYVPIGRALGNRRAYI 2332

Query: 453  PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF--------HTGDIGQIL 504
             +   + L     GE+ + G+ L  GY   P LT E  +   F         TGD+ +  
Sbjct: 2333 LDADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYR 2392

Query: 505  PNGVVKIIDRKKNLIKI 521
             +GVV+ + R  + +KI
Sbjct: 2393 ADGVVEYLGRIDHQVKI 2409

Length = 5163

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 56.9 bits (137), Expect = 4e-08
 Identities = 78/361 (21%), Positives = 129/361 (35%), Gaps = 69/361 (19%)

Query: 219  PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
            P N+  ++YTSG++G PKGV + H  ++  +  +          + V D  L F   +  
Sbjct: 3195 PENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYG-----LGVGDRVLQFTTFS-- 3247

Query: 279  LDRVIEEYF--FRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
             D  +EE F     GA V         L        P LL  +                 
Sbjct: 3248 FDVFVEELFWPLMSGARV--------VLAGPEDWRDPALLVEL----------------- 3282

Query: 337  LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
               +     D L+ Y                        +  A     L+ ++ GG  L 
Sbjct: 3283 ---INSEGVDVLHAYPSMLQA---------------FLEEEDAHRCTSLKRIVCGGEALP 3324

Query: 397  TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL--RLEEVPE 454
             ++++  +V     L   YG TE     T+      C+      V +   +  R   + +
Sbjct: 3325 ADLQQ--QVFAGLPLYNLYGPTEA----TITVTHWQCVEEGKDAVPIGRPIANRACYILD 3378

Query: 455  MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF-------HTGDIGQILPNG 507
                P+     GE+ + G+ L  GY+  P LT E  +   F        TGD+ +   +G
Sbjct: 3379 GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRADG 3438

Query: 508  VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDT 567
            V++ I R  + +KI +G  + L  +E      P + +  V     +  LVA VVP +E  
Sbjct: 3439 VIEYIGRVDHQVKI-RGFRIELGEIEARLLEHPWVREAVVLAVDGRQ-LVAYVVPEDEAG 3496

Query: 568  K 568
             
Sbjct: 3497 D 3497

Length = 5163

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 55.9 bits (135), Expect = 4e-08
 Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 23/196 (11%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF-----PDEMCMVGTAG 439
           LRL+  GGA LS  +   +       L Q +G+ E      V +     P E+ ++ T G
Sbjct: 307 LRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEG----LVNYTRLDDPPEI-IIHTQG 361

Query: 440 -PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHT 497
            P+S   E+R+  V   G +P+     GE+  RG     GYY+ P+    +   DG++ +
Sbjct: 362 RPLSPDDEVRV--VDADG-NPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRS 418

Query: 498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSL--- 552
           GD+ +  P+G + +  R K+ I    GE +A E +EN+    P + D  +    D L   
Sbjct: 419 GDLVRRDPDGYLVVEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGE 477

Query: 553 KSMLVAVVVPCEEDTK 568
           KS   A +V  E   +
Sbjct: 478 KS--CAFIVVKEPPLR 491

Length = 542

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 55.6 bits (135), Expect = 4e-08
 Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 38/160 (23%)

Query: 385 LRLVISGGAPLSTEVEEFLR---VTC-CAFLVQGYGLTETCGPTTVCFP--DEMCMVGTA 438
           L+ V+ GGA +  E+ E      + C C     GYGLTE    +TVC    D +  VG+ 
Sbjct: 242 LKAVLLGGAAIPVELTEQAEQQGIRCWC-----GYGLTEMA--STVCAKRADGLAGVGSP 294

Query: 439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNP---DLTRESIIDGWF 495
            P     E++L +              GE+ +RG +L  GY++      L  +   +GWF
Sbjct: 295 LP---GREVKLVD--------------GEIWLRGASLALGYWRQGQLVPLVND---EGWF 334

Query: 496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
            T D G+   NG + I+ R  NL   S GE +  E +E V
Sbjct: 335 ATRDRGEWQ-NGELTILGRLDNLF-FSGGEGIQPEEIERV 372

Length = 458

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 55.6 bits (134), Expect = 6e-08
 Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 10/205 (4%)

Query: 78  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           T+  +      +  AL    G     RVG    NC + +E + A   +  +  PL   L 
Sbjct: 40  TFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLM 99

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
              +  I++HAE D V V D ++ E L    +    +R +V      A+     +  GIK
Sbjct: 100 NDQIVHIINHAE-DEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIK 158

Query: 197 PYSWDEFLHLGKVNEMEILPPQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
            YS++  L  G+    +  P         I Y++GT+G PKGVV +H   + ++  + L 
Sbjct: 159 VYSYEALLD-GRSTVYD-WPELDETTAAAICYSTGTTGAPKGVVYSHR--SLYLQSLSLR 214

Query: 256 -LDQFEDKMTVDDVYLSFLPLAHIL 279
             D     +T  + +L  +P+ H+L
Sbjct: 215 TTDSL--AVTHGESFLCCVPIYHVL 237

Length = 576

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 55.4 bits (134), Expect = 7e-08
 Identities = 83/351 (23%), Positives = 134/351 (38%), Gaps = 87/351 (24%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI------ 278
            ++TSG++G PK V+ T   +   ++  +       +      V L ++P  H       
Sbjct: 225 YLFTSGSTGMPKAVINTQRMMCANIAMQEQLRP--REPDPPPPVSLDWMPWNHTMGGNAN 282

Query: 279 LDRVIEE---YFFRRGASV-GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
            + ++      +   G  + G +   +  LR    E+ PT+   VP  +  + E    A+
Sbjct: 283 FNGLLWGGGTLYIDDGKPLPGMFEETIRNLR----EISPTVYGNVPAGYAMLAE----AM 334

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
           E+   LRR  F                                       LRL+  GGA 
Sbjct: 335 EKDDALRRSFFK-------------------------------------NLRLMAYGGAT 357

Query: 395 LSTEVEEFLRVTCCA------FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR 448
           LS ++ E ++               GYG TET  PTT     +   VG  G      EL+
Sbjct: 358 LSDDLYERMQALAVRTTGHRIPFYTGYGATET-APTTTGTHWDTERVGLIGLPLPGVELK 416

Query: 449 LEEVPEMGYSPLDDPPCG---EVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQIL 504
           L              P G   EV V+G  +  GY+K+P+LT  +   +G++  GD  + +
Sbjct: 417 L-------------APVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFV 463

Query: 505 -PNGVVK--IID-RKKNLIKISQGEYVALEYL--ENVYCVAPIIEDIWVYG 549
            P+   K  I D R     K+S G +V++  L  + V   +P+I D  V G
Sbjct: 464 DPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAG 514

Length = 624

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 54.7 bits (132), Expect = 1e-07
 Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 19/148 (12%)

Query: 385 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV---GTAG- 439
           LR   + G PL+ EV   F   T    L++G+G TET    T+       M    G+ G 
Sbjct: 303 LRYCTTAGEPLNPEVFNTFKEKTGIK-LMEGFGQTET----TLTIATFPWMEPKPGSMGK 357

Query: 440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR---GKT--LFSGYYKNPDLTRESIIDGW 494
           P   Y    ++ +   G    +    GE+ +R   GK   LF GYY++P+ T E   DG+
Sbjct: 358 PSPGYD---IDIIDPDG-KSCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWHDGY 413

Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           +HTGD   +  +G +  + R  +LIK S
Sbjct: 414 YHTGDTAWMDEDGYLWFVGRADDLIKSS 441

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 53.3 bits (129), Expect = 2e-07
 Identities = 27/77 (35%), Positives = 40/77 (51%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E V ++ + L A G  PG RV +   NCP+++ A  A N L  + VP+   L  
Sbjct: 5   TYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRG 64

Query: 138 GAVNFILDHAEIDFVFV 154
             +  ILDH+    + V
Sbjct: 65  EELAHILDHSGARLIVV 81

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 8/62 (12%)

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL----DQFEDKMTVDDVYLSFLPLA 276
           ++  IMY+SGT+G  KGVVLTH      ++ V+LF+     Q+E   + D+VYL+ LP+ 
Sbjct: 199 DVAAIMYSSGTTGASKGVVLTHR---NLIAMVELFVRFEASQYEYPGS-DNVYLAALPMF 254

Query: 277 HI 278
           HI
Sbjct: 255 HI 256

Length = 560

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 517
            PL +   G +CVRG +L SGY+++ +       DGW  TGD+G +L +G + I  R K+
Sbjct: 404 MPLPERVVGHICVRGPSLMSGYFRDEESQDVLAADGWLDTGDLGYLL-DGYLYITGRAKD 462

Query: 518 LIKI 521
           LI I
Sbjct: 463 LIII 466

Length = 579

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 91/459 (19%), Positives = 144/459 (31%), Gaps = 125/459 (27%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+ E   +  + L + G   G RV       P+   A      L  +  PL+   GP
Sbjct: 2   SYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFGP 61

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                I D  E+                        +V++    L    +    +     
Sbjct: 62  EP---IRDRLEL---------------------GEAKVLITTPEL---YERTDPEDPA-- 92

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                 LH                     +TSGT+G PKGV+  H  +    +     LD
Sbjct: 93  -----LLH---------------------FTSGTTGKPKGVLHVHRAVVAHYATARYVLD 126

Query: 258 QFEDKM---TVDD------VYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR--D 306
              D +   T D        Y    PL +             G ++    G+ +A R   
Sbjct: 127 LRPDDVYWCTADPGWVTGTSYGIIAPLLN-------------GVTLVVDEGEFDAERWYG 173

Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
            L E K T+    P                LR L R   +   +Y L             
Sbjct: 174 ILEEEKVTVWYTAPTA--------------LRMLMRAGPELAARYDL------------- 206

Query: 367 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV 426
                             LR + S G PL+ EV  +        +   +  TET      
Sbjct: 207 ----------------SSLRHIASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIA 250

Query: 427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRG--KTLFSGYYKNP 483
            +P      G+ G      E  + E    G +P+  P   GE+ ++    ++F GY  N 
Sbjct: 251 NYPGIPVKPGSMGRPLPGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNE 310

Query: 484 DLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           +    S +DGW+ TGD+     +G    + R  ++IK +
Sbjct: 311 ERYASSFVDGWYLTGDLAYRDEDGYFWFVGRADDVIKTA 349

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 23/158 (14%)

Query: 383 GRLRLVISGGAPLSTE-VEEFLRVTC-----CAFLVQGYGLTETCGPTTVCFP------D 430
           G LR+ ++GG P+  +  E F                 YGL E+    TV  P      D
Sbjct: 272 GALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVD 331

Query: 431 EMCMVGTAGP--VSVYSE----LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
           E+     +G    +V       + +   P  G + +     GE+ +RG ++ SGY     
Sbjct: 332 EVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAP 391

Query: 485 LTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           +      D WF TGD+G ++  G+V +  R K LI ++
Sbjct: 392 IDP----DDWFPTGDLGYLVDGGLV-VCGRAKELITVA 424

Length = 525

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 52.5 bits (126), Expect = 4e-07
 Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 31/164 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+   V ++ + LR  G   G R+ +   N    V    AC  +  I VPL      
Sbjct: 24  TYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPL------ 77

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
              N+ L  +E+D   +QD + + LL  D  +A R   +    +  A     A++    P
Sbjct: 78  ---NWRLSASELD-ALLQDAEPRLLLGDDAVAAGRT-DVEDLAAFIASAD--ALEPADTP 130

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
                            +PP+  ++  I++TSGTSG PKGV+L+
Sbjct: 131 S----------------IPPERVSL--ILFTSGTSGQPKGVMLS 156

Length = 488

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 53.2 bits (128), Expect = 4e-07
 Identities = 68/324 (20%), Positives = 111/324 (34%), Gaps = 79/324 (24%)

Query: 218  QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
               N+  ++YTSG++G PKGV + H  +A  +  +         ++  +D  L F+  + 
Sbjct: 3235 MGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWI-----AEAYELDANDRVLLFMSFS- 3288

Query: 278  ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              D   E +                           TL+ G   V   + +      EEL
Sbjct: 3289 -FDGAQERFL-------------------------WTLICGGCLV---VRDNDLWDPEEL 3319

Query: 338  RPL--RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL 395
                   RI  A +                + L                L + + GG  +
Sbjct: 3320 WQAIHAHRISIACFP--------------PAYLQQFAEDAGGAD--CASLDIYVFGGEAV 3363

Query: 396  ST-EVEEFLRVTCCAFLVQGYGLTET--------CGPTTVCFPDEMCMVGTAGPVSVYS- 445
                 E+  R      L  GYG TE         CG   VC      +       S+Y  
Sbjct: 3364 PPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVL 3423

Query: 446  ELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH--------T 497
            + +L  VP +G +       GE+ + G  L  GY++ P LT E  +   F         T
Sbjct: 3424 DGQLNPVP-VGVA-------GELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRT 3475

Query: 498  GDIGQILPNGVVKIIDRKKNLIKI 521
            GD+ +   +GV++ + R  + +KI
Sbjct: 3476 GDLARYRADGVIEYLGRIDHQVKI 3499

Length = 3956

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 52.5 bits (126), Expect = 5e-07
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 18/101 (17%)

Query: 466 GEVCVRGKTLFSGYYKNP-----------------DLTRESIIDGWFHTGDIGQILPNGV 508
           GE+ VRG  + + YY +P                 D       DGW  TGD+G +  +G 
Sbjct: 386 GEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGF 445

Query: 509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           + I DR +++I+ S GE++    LEN    AP + +  V G
Sbjct: 446 LTIHDRARDVIR-SGGEWIYSAQLENYIMAAPEVVECAVIG 485

Length = 576

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 52.0 bits (125), Expect = 7e-07
 Identities = 52/212 (24%), Positives = 78/212 (36%), Gaps = 25/212 (11%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E   +  + LR  G   G RV ++  NCPQ+         L  + VP+      
Sbjct: 60  TYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE 119

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL--------TAEQKEM 189
             +++ L+ A  + +   D+     +    R+   LR  V  TSL        T    + 
Sbjct: 120 HELSYELNDAGAEVLLALDQLAP--VVEQVRAETSLR-HVIVTSLADVLPAEPTLPLPDS 176

Query: 190 AVQTGIKPYSWDEFL-HLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHE---- 243
                +      + L  L        LP P    +  + YT GT+G PKG   T      
Sbjct: 177 LRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVY 236

Query: 244 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275
           T A     V +   +       D V+LSFLP 
Sbjct: 237 TAAAAY-AVAVVGGE-------DSVFLSFLPE 260

Length = 567

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 48/168 (28%), Positives = 72/168 (42%), Gaps = 35/168 (20%)

Query: 384 RLRLVISGGAPLSTEVEEF------LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGT 437
           RLR V++G   L    ++       LR+      ++GYG+TE C P            GT
Sbjct: 480 RLRYVVAGAEKLQESTKQLWQDKFGLRI------LEGYGVTE-CAPVVSINVPMAAKPGT 532

Query: 438 AGPVSVYSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYK--NPDLTRESIID- 492
            G +    + RL  VP  E G         G + ++G  + +GY +   P +      + 
Sbjct: 533 VGRILPGMDARLLSVPGIEQG---------GRLQLKGPNIMNGYLRVEKPGVLEVPTAEN 583

Query: 493 -------GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLE 533
                  GW+ TGDI +    G V+I  R K   KI+ GE V+LE +E
Sbjct: 584 ARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIA-GEMVSLEMVE 630

Length = 718

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 50.8 bits (122), Expect = 2e-06
 Identities = 40/160 (25%), Positives = 63/160 (39%), Gaps = 15/160 (9%)

Query: 400 EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP----VSVYSELRLEEVP-- 453
            EF R   C  +  GYG +E          +     G+ G     V++Y+   L E    
Sbjct: 281 AEFSRRFGCQ-VEDGYGSSEGAVIVV---REPGTPPGSIGRGAPGVAIYNPETLTECAVA 336

Query: 454 ---EMGYSPLDDPPCGE-VCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV 509
                G     D   GE V   G   F GYY NP+ T E +  G + +GD+     +G +
Sbjct: 337 RFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDADGWI 396

Query: 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
               R  + +++  GE ++   +E +    P I  + VY 
Sbjct: 397 YFAGRTADWMRVD-GENLSAAPIERILLRHPAINRVAVYA 435

Length = 540

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 12/184 (6%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSV 443
           LR VI   AP   +V+  +       + + YG TE+ G  T    ++ +   GT G  + 
Sbjct: 273 LRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTES-GAVTFATSEDALSHPGTVGKAAP 331

Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVR--GKTLFSGYYKNPDLTRESIIDGWFHTGDIG 501
            +ELR   V E G  PL     GE+  R  G   F+ Y+  P+   E    G+  +GD+G
Sbjct: 332 GAELRF--VDEDG-RPLPQGEIGEIYSRIAGNPDFT-YHNKPEKRAEIDRGGFITSGDVG 387

Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DS-LKSMLVA 558
            +  +G + + DRK++++ IS G  +    +E V    P + D  V+G  D+     L+A
Sbjct: 388 YLDADGYLFLCDRKRDMV-ISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMA 446

Query: 559 VVVP 562
           VV P
Sbjct: 447 VVEP 450

Length = 509

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 31/177 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY++      Q+  AL A G EPG RVG    N  + +EA    +    +C  +   L P
Sbjct: 41  TYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRLFP 100

Query: 138 GAVNFILDHAE-----IDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM--- 189
             + +I++HAE      D  F+    + + L+P C + +    M     L A    +   
Sbjct: 101 EQIAYIVNHAEDRYVLFDLTFL---PLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCY 157

Query: 190 ----AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
                 Q G   Y W  F      +E      Q  ++C   YTSGT+G+PKG + +H
Sbjct: 158 ETLVGAQDG--DYDWPRF------DEN-----QASSLC---YTSGTTGNPKGALYSH 198

Length = 539

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 78/372 (20%), Positives = 114/372 (30%), Gaps = 95/372 (25%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD---- 280
           I++TSG++G PKGVV TH    TF + +D     +   +   D  L+  P   +      
Sbjct: 90  ILFTSGSTGPPKGVVYTHR---TFAAQIDALRSLYG--IREGDRDLAAFPPFALFGPALG 144

Query: 281 --RVIEEYFFRRGASV--GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
              VI        A++        +  +    +   P LL  V R  E+        L  
Sbjct: 145 VTTVIPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALLKNVARYCEE----NGIQLPS 200

Query: 337 LR-----------PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL 385
           LR            L RR    L           Y   EA P+A +              
Sbjct: 201 LRRVLSAGAPVPPDLLRRFVANLMPEAEIHTP--YGATEALPVASI------------EG 246

Query: 386 RLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYS 445
           R V++     S E  E     C    V G               D   +    GP++ + 
Sbjct: 247 REVLAE----SAEPPEAGAGVCVGHPVPGI--------------DVRIIPIDDGPIASWD 288

Query: 446 ---ELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID----GWFHTG 498
              EL   EV             GE+ V G  +   YY  P+ T+ + I      W   G
Sbjct: 289 DDIELPPGEV-------------GEIIVSGPHVTREYYNRPEATKLAKISDGNRIWHRMG 335

Query: 499 DIGQILPNGVVKIIDRKKNLIKISQGEY------VALEYLENVYCVA--PIIEDIWVYGD 550
           D+G     G +    RK + ++ + G                V   A   +       G 
Sbjct: 336 DLGYFDDQGRLWFCGRKAHRVETAGGTLFTVPVEQVFNRHPGVRRSALVGV-------GK 388

Query: 551 SLKSMLVAVVVP 562
                 V VV P
Sbjct: 389 PGTQAPVLVVEP 400

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 50.3 bits (121), Expect = 3e-06
 Identities = 48/188 (25%), Positives = 73/188 (38%), Gaps = 40/188 (21%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 134
           ++ E+  +V ++ +ALR  G +PG RV  Y  N P+ V AM A  ++  I   C P    
Sbjct: 88  SWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSP---D 144

Query: 135 LGPGAVNFILDHAE---------IDFVFVQDK------KVKELLS--PDCRSAQRLRVMV 177
            G  AV   LD            +D      K      K+ E++   P       L  +V
Sbjct: 145 FGVEAV---LDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPS------LEAVV 195

Query: 178 CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEIL--PPQPFN-ICTIMYTSGTSGD 234
               L++       Q     +S    L     +    L     PF+    I+Y+SGT+G 
Sbjct: 196 VVPYLSS-----DAQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWILYSSGTTGL 250

Query: 235 PKGVVLTH 242
           PK +V   
Sbjct: 251 PKCIVHGA 258

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 38/181 (20%)

Query: 388 VISGGAPLSTEVEEF---LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
           V+ GG P    V +      +     +V+ YG++ET G    C  D + + G        
Sbjct: 156 VLVGGGPAPAPVLDAAAAAGIN----VVRTYGMSETSGG---CVYDGVPLDGV------- 201

Query: 445 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL 504
             +R+E+              G + + G TL  GY +NP         GWF T D+G  L
Sbjct: 202 -RVRVED--------------GRIALGGPTLAKGY-RNPVDPDPFAEPGWFRTDDLG-AL 244

Query: 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVV 561
            +GV+ ++ R  + I  + G  V  + +E      P + D  V+G   D L   +VA VV
Sbjct: 245 DDGVLTVLGRADDAIS-TGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVV 303

Query: 562 P 562
            
Sbjct: 304 G 304

Length = 358

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 49.5 bits (118), Expect = 5e-06
 Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 19/210 (9%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA---MEACNALSLICVPLYDT 134
           T+ + Y+   ++ SAL      PG  V +   N P   EA   +    A+ + CV +   
Sbjct: 47  TWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAV-VNCVNI--R 103

Query: 135 LGPGAVNFILDHAEIDFVFVQDK------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKE 188
           L    + F+L+H++ + V V  +      +  ++L+   +S+ +  +++     T + K 
Sbjct: 104 LNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKS 163

Query: 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQ-PFNICTIMYTSGTSGDPKGVVLTHETIAT 247
           +    G     +++FL  G   E    PP   +    + YTSGT+  PKGVVL H     
Sbjct: 164 LQYALGKGAIEYEKFLETGD-PEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYL 222

Query: 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
                 L        M    VYL  LP+ H
Sbjct: 223 MALSNALIWG-----MNEGAVYLWTLPMFH 247

Length = 567

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 49.2 bits (118), Expect = 6e-06
 Identities = 46/206 (22%), Positives = 77/206 (37%), Gaps = 35/206 (16%)

Query: 79  YKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPG 138
           Y+ +          L A G +PG RV +       +VEA  AC    L+ VPL     P 
Sbjct: 52  YQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPL-----PL 106

Query: 139 AVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA-----VQT 193
            + F    + I        +++ +L+    SAQ        T    E             
Sbjct: 107 PMGFGGRESYIA-------QLRGMLA----SAQ---PAAIITP--DELLPWVNEATHGNP 150

Query: 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
            +   S   F       ++ +  P P +I  + Y+SG++  P+GV++TH  +   +  + 
Sbjct: 151 LLHVLSHAWF-KALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAIS 209

Query: 254 LFLDQFEDKMTV--DDVYLSFLPLAH 277
                  D + V   D  +S+LP  H
Sbjct: 210 H------DGLKVRPGDRCVSWLPFYH 229

Length = 579

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 49.2 bits (118), Expect = 6e-06
 Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 23/175 (13%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+Y+EV ++   LR  G   G RV IY    P+ V AM AC  +  I   ++     
Sbjct: 75  TYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFAS 134

Query: 138 GAVNFILDHAE------IDFVFVQDKKV--KELLSPDCRSAQR--LRVMVCFTSLTAEQK 187
             +   +D A+        F     + V  K LL      +Q    +V++    L   Q 
Sbjct: 135 KELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKALELSQHKPHKVLI----LNRGQV 190

Query: 188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF---NICTIMYTSGTSGDPKGVV 239
              ++ G +   W E +      +   +   P    +   I+YTSGT+G PKGVV
Sbjct: 191 PAPLKPG-RDLDWAELMA-----KARPVDCVPVESTDPLYILYTSGTTGKPKGVV 239

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 48.9 bits (117), Expect = 7e-06
 Identities = 44/204 (21%), Positives = 79/204 (38%), Gaps = 19/204 (9%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+ EE+ +  +   + G   G +V ++  NCP+++        +  I VP+   L  
Sbjct: 39  SYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLR 98

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               +IL +++   +    +            A  LR  +C T +     +         
Sbjct: 99  EESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLR-HICLTRVALPADDGVS------ 151

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
            S+ +             P    +   I++TSGT+  PKGVV+TH  +         F  
Sbjct: 152 -SFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNL--------RFAG 202

Query: 258 QFED---KMTVDDVYLSFLPLAHI 278
            +      +  DDVYL+ +P  HI
Sbjct: 203 YYSAWQCALRDDDVYLTVMPAFHI 226

Length = 517

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 48.5 bits (116), Expect = 7e-06
 Identities = 42/169 (24%), Positives = 61/169 (36%), Gaps = 36/169 (21%)

Query: 368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427
             DL  +         RLR  +S G PL+ EV E ++      +  GYG TET       
Sbjct: 191 QQDLAQYDV-------RLREAVSAGEPLNPEVIERVKKAWGLTIRDGYGQTET------- 236

Query: 428 FPDEMCMVGT--AGPVSVYSELRLEEVPEMGY-----SPLDDPPC---GEVCV----RGK 473
                 M+G      V   S  R    P  GY                GE+ +    R  
Sbjct: 237 ----TAMIGNSPGQKVKPGSMGR----PLPGYRVVLLDDEGKEIPVTEGEIALDLGDRPI 288

Query: 474 TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
            L  GY  +P+ T  +   G++ TGD      +G +  + R  ++ K S
Sbjct: 289 GLMLGYMGDPEKTAAAFRGGYYRTGDKAYRDEDGYLWFVGRADDVFKSS 337

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 48.8 bits (117), Expect = 7e-06
 Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 36/191 (18%)

Query: 383 GRLRLVISGGAP-----LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGT 437
            + R ++ GGAP     L    +  LR+         YG+TET        PD+      
Sbjct: 230 AQFRTILLGGAPAWPSLLEQARQLQLRLAPT------YGMTETASQIATLKPDDF----L 279

Query: 438 AGPVSVYSEL---RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGW 494
           AG  S    L   ++          +     G + ++ ++L  GYY  P +  +S   G 
Sbjct: 280 AGNNSSGQVLPHAQIT---------IPANQTGNITIQAQSLALGYY--PQI-LDS--QGI 325

Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSL 552
           F T D+G +   G + I+ R    I I+ GE V    +E       +++D+ V G  D  
Sbjct: 326 FETDDLGYLDAQGYLHILGRNSQKI-ITGGENVYPAEVEAAILATGLVQDVCVLGLPDPH 384

Query: 553 -KSMLVAVVVP 562
              ++ A+ VP
Sbjct: 385 WGEVVTAIYVP 395

Length = 452

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 48.7 bits (117), Expect = 7e-06
 Identities = 51/204 (25%), Positives = 74/204 (36%), Gaps = 22/204 (10%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+     ++   LRA G   G  V I   N P++ E   A     L   P       
Sbjct: 13  TYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTP------- 65

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +N+ L  AEI ++ V D   K L+ S           +            + V   + 
Sbjct: 66  --INWHLTAAEIAYI-VDDSGAKVLIVSAALADT--AAELAAELPAGVPL-LLVVAGPVP 119

Query: 197 PY-SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVV--LTHETIATFVSGVD 253
            + S++E L       +            ++Y+SGT+G PKG+   L          G+ 
Sbjct: 120 GFRSYEEALAAQPDTPIADETAG----ADMLYSSGTTGRPKGIKRPLPGLDPDE-APGMM 174

Query: 254 LFLDQFEDKMTVDDVYLSFLPLAH 277
           L L  F      D VYLS  PL H
Sbjct: 175 LALLGFGMYGGPDSVYLSPAPLYH 198

Length = 502

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 48.4 bits (116), Expect = 8e-06
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 9/64 (14%)

Query: 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV--DDVYLSFL 273
             +P +   I++TSG+ G PKGVVL+H  +   +       DQ    + +  +DV L  L
Sbjct: 141 GAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANI-------DQIAAVIDLNTEDVLLGAL 193

Query: 274 PLAH 277
           PL H
Sbjct: 194 PLFH 197

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 69/327 (21%), Positives = 115/327 (35%), Gaps = 75/327 (22%)

Query: 214  ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
             +   P N+  ++YTSG++G PKG    H  +   V+ +    + ++  ++  DV L F 
Sbjct: 1712 AVNLAPQNLAYVIYTSGSTGRPKGAGNRHGAL---VNRLCATQEAYQ--LSAADVVLQFT 1766

Query: 274  PLAHILDRVIEEYFFR--RGASV----GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIH 327
              A   D  + E F+    GA +       H D   L   +   + T L  VP + +++ 
Sbjct: 1767 SFA--FDVSVWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLL 1824

Query: 328  EGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRL 387
            + + + +E    LRR +                   EA  +    A R    RL      
Sbjct: 1825 Q-MDEQVEHPLSLRRVVCGG----------------EALEVE---ALRPWLERLPDT--- 1861

Query: 388  VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC-----GPTTVCFPDEMCMVGTAGPVS 442
                                   L   YG TET              +    V    P++
Sbjct: 1862 ----------------------GLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIA 1899

Query: 443  VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF------- 495
              S   L+       +P+     GE+ + G  L  GY   P LT E  +   F       
Sbjct: 1900 NLSTYILDA----SLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRL 1955

Query: 496  -HTGDIGQILPNGVVKIIDRKKNLIKI 521
              TGD+ +   +GV++ + R  + +KI
Sbjct: 1956 YRTGDLARYRADGVIEYLGRIDHQVKI 1982

Length = 3956

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 46.9 bits (111), Expect = 3e-05
 Identities = 48/158 (30%), Positives = 64/158 (40%), Gaps = 23/158 (14%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--------EMCMVG 436
           LRLV  GG+        F+  T      Q YGL+ET G T +C P         E   VG
Sbjct: 288 LRLVGYGGSRAIAADVRFIEATGVR-TAQVYGLSET-GCTALCLPTDDGSIVKIEAGAVG 345

Query: 437 TAGP-VSVYSELRLEEVPEMGYSPL-----DDPPCGEVCVRGKTLFSGYYKNPDLTRESI 490
              P V VY           G  P           G + ++      GY+ NP+ T E +
Sbjct: 346 RPYPGVDVYLA------ATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL 399

Query: 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
           IDGW +TGD+ +   +G   I  R   +I I  G  +A
Sbjct: 400 IDGWVNTGDLLERREDGFFYIKGRSSEMI-ICGGVNIA 436

Length = 540

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 51/191 (26%), Positives = 76/191 (39%), Gaps = 25/191 (13%)

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTET--CGPTTVCFPDEMCMVGTA-- 438
            LR + S GA  S EV +  L +     LV   G +ET   G +            T   
Sbjct: 136 SLRAISSSGAMWSPEVKQGLLELLPNLALVDALGASETGGGGSSVSRAGGA---SATGKF 192

Query: 439 --GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG- 493
             GP +V  +    EVP            G +   G+    GYYK+P+ T ++   IDG 
Sbjct: 193 ELGPDTVVLDEDGSEVPP------GSGEVGWIARGGRVPL-GYYKDPEKTAKTFREIDGV 245

Query: 494 -WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--- 549
            +   GD  ++  +G + ++ R    I  + GE V  E +E      P + D  V G   
Sbjct: 246 RYAVPGDFARVEADGTITLLGRGSVCIN-TGGEKVFPEEVEEALKAHPDVADALVVGVPD 304

Query: 550 DSLKSMLVAVV 560
           +     +VAVV
Sbjct: 305 ERWGQRVVAVV 315

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 23/71 (32%), Positives = 35/71 (49%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+++   +  + LRA G  PG RV +   + P+ V A  AC     + V L   L P
Sbjct: 12  TYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLTP 71

Query: 138 GAVNFILDHAE 148
             +  ILD + 
Sbjct: 72  QDLEHILDDSG 82

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 117/556 (21%), Positives = 189/556 (33%), Gaps = 145/556 (26%)

Query: 19  PSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKT 78
           P   P +   L    +P     LN A ++    V    GNR          +     W T
Sbjct: 14  PEQWPEFTFDLPQFQYPER---LNCAAELLDRHVHNGRGNR-------PCFRTFEETW-T 62

Query: 79  YKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQ----WVEAMEACNALSLICVPLYD 133
           Y+++ +   +I   L    G  PG RV +  AN P     W+  ++A      I V    
Sbjct: 63  YQDLLDRANRIAHVLVEDLGVVPGNRVLLRSANTPMLVACWLAVLKA----GAIVVTTMP 118

Query: 134 TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
            L    +  I+D A I                           +C   LTA         
Sbjct: 119 LLRAKELTTIVDKARITHA------------------------LCDKRLTAAD------- 147

Query: 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
                                      ++  I +TSGT+G PKG +  H  I   ++  D
Sbjct: 148 ---------------------------DVALIGFTSGTTGLPKGTMHFHRDI---LAICD 177

Query: 254 LFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGY--YHGDLNALRDDLMEL 311
            F  +   + T DDV++   PLA         + F  G  V +    G            
Sbjct: 178 AF-PRHVLQPTPDDVFIGSPPLA---------FTFGLGGLVLFPLRFG------------ 215

Query: 312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL 371
              +L                 LE+  P    +  A+ +++   +         +P A  
Sbjct: 216 ASAVL-----------------LEQATP--PLLLKAIQEHRATILF-------TAPTAYR 249

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPD 430
               KVKA     LR  +S G  L  +V +++   T    ++ G G TE      +   +
Sbjct: 250 AMLIKVKAFDISSLRKCVSAGETLPAKVWQDWYERTGLK-IIDGIGATEML-HIFISANE 307

Query: 431 EMCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRES 489
           E    G  G PV  Y    +++      + +     G + VRG T     Y + +  +E 
Sbjct: 308 ENAKPGATGKPVPGYEARIVDD----QGNEVPRGEAGRLAVRGPT--GCRYLDDERQQEY 361

Query: 490 IIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           + DGW  TGDI +   +G    + R  ++I +S G  +A   +E+     P + +  V G
Sbjct: 362 VRDGWNVTGDIFRQDEDGYFHYVARSDDMI-VSAGYNIAAPEVEDALLTHPDVAECAVIG 420

Query: 550 --DSLKSMLV-AVVVP 562
             D  +  +V A +V 
Sbjct: 421 VPDEERGQIVCAHIVL 436

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 46.1 bits (110), Expect = 5e-05
 Identities = 104/496 (20%), Positives = 160/496 (32%), Gaps = 147/496 (29%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E+   +   L A G   G  V +   N   +V A+ A   +    + L      
Sbjct: 76  TYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFSG 135

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             +  +     +    V D +  +LLS       RLR                       
Sbjct: 136 PQLAEVAAREGVK-ALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGS--------- 185

Query: 198 YSWDEFLHLGKVNEMEILP--PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
            + +    L   +    LP  P+P  I  ++ TSGT+G PKG      +           
Sbjct: 186 -TDETLDDLIAGSSTAPLPKPPKPGGI--VILTSGTTGTPKGAPRPEPS----------- 231

Query: 256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASV----------GYYHGDLNALR 305
                             PLA +L RV     FR G +           G+ H  L    
Sbjct: 232 ---------------PLAPLAGLLSRVP----FRAGETTLLPAPMFHATGWAHLTLA--- 269

Query: 306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA------LYKYKLAWMNMG 359
              M L  T+      V                   RR FD       + K+K   +   
Sbjct: 270 ---MALGSTV------VL------------------RRRFDPEATLEDIAKHKATAL--- 299

Query: 360 YKQREASP-----LADLLAFRKVKARLG-GRLRLVISGGAPLSTEV-----EEFLRVTCC 408
                  P     + DL    +V A+     L+++   G+ LS E+     E F  V   
Sbjct: 300 ----VVVPVMLSRILDLGP--EVLAKYDTSSLKIIFVSGSALSPELATRALEAFGPVLY- 352

Query: 409 AFLVQGYGLTETCGPTTVCFPDEMCMV-GTAGPVSVYSELRLEEVPEMGYSPLDD----- 462
                 YG TE     T+  P+++    GT G       +++          LD+     
Sbjct: 353 ----NLYGSTE-VAFATIATPEDLAEAPGTVGRPPKGVTVKI----------LDENGNEV 397

Query: 463 PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
           P    G + V     F GY    D   + IIDG   +GD+G    +G++ +  R  ++I 
Sbjct: 398 PRGVVGRIFVGNGFPFEGYTDGRD---KQIIDGLLSSGDVGYFDEDGLLFVDGRDDDMI- 453

Query: 521 ISQGEYVALEYLENVY 536
           +S G        ENV+
Sbjct: 454 VSGG--------ENVF 461

Length = 549

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 45.6 bits (109), Expect = 7e-05
 Identities = 58/211 (27%), Positives = 78/211 (36%), Gaps = 24/211 (11%)

Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTET--C 421
           A PL D  A           L  + SGGA  S  V E  L +     L    G +ET   
Sbjct: 280 ARPLLD--ALEARGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFG 337

Query: 422 GPTTVCF--PDEMCMVGTAGP-VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
           G  TV            T GP   V  E      P            G +  RG  +  G
Sbjct: 338 GSGTVAKGAVHTGGPRFTIGPRTVVLDEDGNPVEP-------GSGEIGWIARRGH-IPLG 389

Query: 479 YYKNPDLTRES--IIDG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
           YYK+P+ T E+   IDG  +   GD  ++  +G + ++ R    I  + GE V  E +E 
Sbjct: 390 YYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCIN-TGGEKVFPEEVEE 448

Query: 535 VYCVAPIIEDIWVYG---DSLKSMLVAVVVP 562
                P + D  V G   +     +VAVV  
Sbjct: 449 ALKAHPDVADALVVGVPDERWGQEVVAVVQL 479

Length = 533

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 45.3 bits (108), Expect = 9e-05
 Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 27/191 (14%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
           LR+ I   AP   EV+  +       + + Y  +E  G T +   D +   G+ G  +V 
Sbjct: 264 LRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGK-AVL 322

Query: 445 SELRL-----EEVP--EMG--YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GW 494
            E+R+      E+P  E+G  Y  +D  P           F  Y+ +P+ T  +    GW
Sbjct: 323 GEVRILDEDGNELPPGEIGTVYFEMDGYP-----------FE-YHNDPEKTAAARNPHGW 370

Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DS 551
              GD+G +  +G + + DRK ++I IS G  +  + +EN+    P + D+ V+G   + 
Sbjct: 371 VTVGDVGYLDEDGYLYLTDRKSDMI-ISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEE 429

Query: 552 LKSMLVAVVVP 562
           +   + AVV P
Sbjct: 430 MGERVKAVVQP 440

Length = 502

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 22/169 (13%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E ++ +LQ    L A G   G  V +   N   ++E   A + L  + +P+   L  
Sbjct: 29  SYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAA 88

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             V +IL  A    + V ++                     F ++ A +    V      
Sbjct: 89  DEVAYILGDAGAKLLLVDEE---------------------FDAIVALETPKIV-IDAAA 126

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA 246
            +    L  G +         P ++  +MYTSGT+  PKGV+ ++  + 
Sbjct: 127 QADSRRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLH 175

Length = 497

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 44.9 bits (107), Expect = 1e-04
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275
             +P +  TI+++SG+ G+PKGV+L+H  I + +  +          +  DDV LS LP 
Sbjct: 778 TFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-----NLRNDDVILSSLPF 832

Query: 276 AH 277
            H
Sbjct: 833 FH 834

Length = 1146

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 45.2 bits (108), Expect = 1e-04
 Identities = 56/187 (29%), Positives = 81/187 (43%), Gaps = 39/187 (20%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 134
           ++ E+  +V  + +ALRA G  PG RV  Y  N P+ V AM A  +L  I   C P +  
Sbjct: 116 SWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDF-- 173

Query: 135 LGPGAVNFILDH-AEI--------DFVFVQDK------KVKELLS--PDCRSAQRLRVMV 177
            G   V   LD   +I        D      K      KV EL +  P   S + + V+V
Sbjct: 174 -GVQGV---LDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALP---SLEHV-VVV 225

Query: 178 CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFN--ICTIMYTSGTSGDP 235
            +          A         W++FL   +  E+E   P PF+  +  I+Y+SGT+G P
Sbjct: 226 PYL-----GPAAAAAALPGALLWEDFLAPAEAAELEFE-PVPFDHPLW-ILYSSGTTGLP 278

Query: 236 KGVVLTH 242
           K +V  H
Sbjct: 279 KCIVHGH 285

Length = 655

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGE 525
           G V V+    F GY     L RE   DGW    D+G     G + I+ R+KN+I +  G 
Sbjct: 334 GTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMI-LFGGI 392

Query: 526 YVALEYLENVYCVAPIIEDIWVYG 549
            +  E +E+V    P +++I V G
Sbjct: 393 NIFPEEIESVLHEHPAVDEIVVIG 416

Length = 487

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)

Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
            +  QP +   I++TSG+ G PKGVV +H+++   V  +    D      T +D ++S L
Sbjct: 359 QVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIAD-----FTPNDRFMSAL 413

Query: 274 PLAH 277
           PL H
Sbjct: 414 PLFH 417

Length = 718

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 48/208 (23%), Positives = 73/208 (35%), Gaps = 30/208 (14%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+ E   ++    R+ G + G  V I+  N  +++E   A     L    +   L P
Sbjct: 26  TYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTP 85

Query: 138 GAVNFILDH--AEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195
               +I+D   A           V   L   C    R R+++                G 
Sbjct: 86  AEAAYIVDDSGARALITSAAKLDVARALLKQC-PGVRHRLVL---------DGDGELEGF 135

Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFN---ICTIM-YTSGTSGDPKGVV--LTHETIATFV 249
             Y+            +  LP  P     + T M Y+SGT+G PKG+   L  +   T +
Sbjct: 136 VGYA----------EAVAGLPATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPL 185

Query: 250 SGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
                    +      D VYLS  PL H
Sbjct: 186 PLTAFLQRLW--GFRSDMVYLSPAPLYH 211

Length = 511

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 20/159 (12%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTC---CAFLVQGYGLTETCGPTTVCF-----PDEMCMVG 436
           L+L+  GGA LS  +    R+     C  L Q +G+ E      V +      DE     
Sbjct: 302 LKLLQVGGARLSETLAR--RIPAELGCQ-LQQVFGMAEG----LVNYTRLDDSDERIFTT 354

Query: 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWF 495
              P+S   E+    V +   +PL     G +  RG   F GYYK+P     +   +G++
Sbjct: 355 QGRPMSPDDEVW---VADADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFY 411

Query: 496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
            +GD+  I P+G + ++ R+K+ I    GE +A E +EN
Sbjct: 412 CSGDLVSIDPDGYITVVGREKDQIN-RGGEKIAAEEIEN 449

Length = 536

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 42.9 bits (102), Expect = 4e-04
 Identities = 22/71 (30%), Positives = 33/71 (46%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+ E   Q+ + LRA G  PG RVG+        V A+ A        VPL  +   
Sbjct: 14  SYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKAGAAYVPLDPSYPA 73

Query: 138 GAVNFILDHAE 148
             + ++L+ AE
Sbjct: 74  ERLQYMLEDAE 84

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 43.4 bits (102), Expect = 4e-04
 Identities = 50/179 (27%), Positives = 69/179 (38%), Gaps = 31/179 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY++++ EV    SALRA G   G RV IY     + V AM AC  +  I   ++     
Sbjct: 85  TYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFAS 144

Query: 138 GAVNFILDHAEIDFVFVQDK-----KV---KELLSPDCRSAQRLRVMVCFTSLTAEQKEM 189
            ++   +D A    +   D      KV   K LL      AQ     V           +
Sbjct: 145 HSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHV-----------L 193

Query: 190 AVQTGIKP----------YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
            V  G+ P          Y+     H      +E L  +      I+YTSGT+G PKGV
Sbjct: 194 LVDRGLAPMRLIPGRDVDYAALRTQHEDAQVPVEWL--ESNEPSYILYTSGTTGKPKGV 250

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 43.3 bits (103), Expect = 4e-04
 Identities = 43/158 (27%), Positives = 56/158 (35%), Gaps = 60/158 (37%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQG------YGLTETCGPTTVCFPDEM------ 432
           LR VIS GAP+   V E  R    A L         YG TE   P +     E+      
Sbjct: 290 LRRVISAGAPVPIAVIERFR----AMLPPDAEILTPYGATE-ALPISSIESREILFATRA 344

Query: 433 --------CMVG-------------TAGPVSVYSE-LRLE--EVPEMGYSPLDDPPCGEV 468
                   C VG             +  P+  + + LRL   E+             GE+
Sbjct: 345 ATDNGAGIC-VGRPVDGVEVRIIAISDAPIPEWDDALRLATGEI-------------GEI 390

Query: 469 CVRGKTLFSGYYKNPDLTRES-IIDG----WFHTGDIG 501
            V G  +   YY  P+ TR + I DG    W   GD+G
Sbjct: 391 VVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLG 428

Length = 552

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 42.9 bits (101), Expect = 5e-04
 Identities = 49/203 (24%), Positives = 78/203 (38%), Gaps = 25/203 (12%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+   V  + + L A G  P  RV +   N    V A+ A + L  +         P
Sbjct: 30  TYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAV---------P 80

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             +N  L  AEI  +  + +    +++ D +    +        + A      V  G  P
Sbjct: 81  ALMNPRLKPAEIAELIKRGEMTAAVIAVDAQVMDAIFQSGSGVRVLALGDL--VGLGE-P 137

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL- 256
            S    +        E  P +P     + YTSGT+G PKG V+      + V    LF+ 
Sbjct: 138 ESAGPPI--------EDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRV----LFMS 185

Query: 257 DQFEDKMTVDDVYLSFLPLAHIL 279
            Q   +    +V L  +PL H++
Sbjct: 186 TQAGLRHGRHNVVLGLMPLYHVI 208

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 42.6 bits (101), Expect = 5e-04
 Identities = 51/209 (24%), Positives = 77/209 (36%), Gaps = 47/209 (22%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
              V  T++++   + Q+ +     G   G  V + G N P+ + A  A        +PL
Sbjct: 25  NDEVL-TWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPL 83

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
              L    +  +L    +DF  V        L  +            F++LT+       
Sbjct: 84  NPQLPQPLLEELLPSLTLDFALV--------LEGENT----------FSALTS------- 118

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS- 250
                       LHL  V     +  QP  + T+  TSG++G PK  V T +  A   S 
Sbjct: 119 ------------LHLQLVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQ--AHLASA 164

Query: 251 -GVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
            GV L L  F    T  D +L  LPL H+
Sbjct: 165 EGV-LSLMPF----TAQDSWLLSLPLFHV 188

Length = 458

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 25/173 (14%)

Query: 77  KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           +++ E+ +   +    L A G  PG  V +   N   + EA  A   L    VP      
Sbjct: 12  RSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVP------ 65

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLS-PDCRSAQRLRVMVCFTSLTAEQ-KEMAVQTG 194
              VN+     EI ++  +D   + L++  D        +    T L+     E+A    
Sbjct: 66  ---VNWHFKPEEIAYIL-EDSGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYR 121

Query: 195 IKPYS---------WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
           I P           W+ +L   +  +   +P QP ++   +YTSGT+G PKGV
Sbjct: 122 ISPALLTPPAGAIDWEGWLAQQEPYDGPPVP-QPQSM---IYTSGTTGHPKGV 170

Length = 509

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 11/183 (6%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
           L + I   AP   +V+E +       + + Y  TE  G T     + +   GT G   ++
Sbjct: 277 LEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRA-MF 335

Query: 445 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID--GWFHTGDIGQ 502
            +L + +  +    P  +P  G +   G   F  Y  +P  T E+      W   GDIG 
Sbjct: 336 GDLHILD-DDGAELPPGEP--GTIWFEGGRPFE-YLNDPAKTAEARHPDGTWSTVGDIGY 391

Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAV 559
           +  +G + + DR   +I IS G  +  +  EN+    P + D  V+G   + L   + AV
Sbjct: 392 VDEDGYLYLTDRAAFMI-ISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAV 450

Query: 560 VVP 562
           V P
Sbjct: 451 VQP 453

Length = 511

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 43.1 bits (102), Expect = 5e-04
 Identities = 42/172 (24%), Positives = 65/172 (37%), Gaps = 46/172 (26%)

Query: 385 LRLVISGGAPLS-TEVEEF--------LRVTCCAFLVQGYGLTET--------CG-PTTV 426
           LR  ++G  P+   +VE+         LR      ++  YG+ E         CG    V
Sbjct: 278 LRFALNGAEPIDPADVEDLLDAGARFGLRPEA---ILPAYGMAEATLAVSFSPCGAGLVV 334

Query: 427 CF--PDEMCMVGTAGPVSV------------YSELRLEEVPEMGYSPLDDPPCGEVCVRG 472
                D +  +  A P +                L +  V E G   L     G + +RG
Sbjct: 335 DEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVDEDG-QVLPPRGVGVIELRG 393

Query: 473 KTLFSGYYKNPDLTRESII-----DGWFHTGDIGQILPNGVVKIIDRKKNLI 519
           +++  GY     LT +  I     DGW  TGD+G +   G V +  R K++I
Sbjct: 394 ESVTPGY-----LTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVI 440

Length = 545

>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase

 Score = 42.6 bits (100), Expect = 6e-04
 Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 24/177 (13%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 134
           T+ E+  +V  + +ALRA G  PG RV  Y  N PQ V AM A  ++  I   C P +  
Sbjct: 116 TWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDF-- 173

Query: 135 LGPGAVNFILD---HAEIDFVFVQD--------KKVKELLSPDCRSAQRLRVMVCFTSLT 183
                   +LD     E   +F  D           ++ ++   +    LR +V    L 
Sbjct: 174 ----GARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLG 229

Query: 184 AEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF-NICTIMYTSGTSGDPKGVV 239
             + E     G      ++F    +  E+      PF +   I+++SGT+G PK +V
Sbjct: 230 PRETEAPKIDG--ALDLEDFTAAAQAAELV-FEQLPFDHPLWILFSSGTTGLPKCIV 283

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 42.2 bits (100), Expect = 8e-04
 Identities = 39/185 (21%), Positives = 70/185 (37%), Gaps = 27/185 (14%)

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            LR +I  G  L  ++ +EF        +V+ YG TE      +   +     G  G + 
Sbjct: 197 PLRKII--GNGLRPDIWDEFKERFGVPRIVEFYGSTE-GNVGFINLFN---KPGAVGRLP 250

Query: 443 VYSELRLEEVPEMGYSPLDDPP--C--------GEVCVRGKTL--FSGYYKNPDLTRESI 490
             + + + +       P+ D    C        G +         F GY  +    ++ +
Sbjct: 251 -PAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRNPFDGYTDDEATEKKIL 309

Query: 491 I------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
                  D +F+TGD+ +    G    +DR  +  +  +GE V+   +E V    P +E+
Sbjct: 310 RDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRW-KGENVSTTEVEEVLAKHPGVEE 368

Query: 545 IWVYG 549
             VYG
Sbjct: 369 ANVYG 373

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 41.4 bits (98), Expect = 0.001
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 18/64 (28%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS------------- 271
           ++YTSG++G PKGV ++H  +  F+  +          +   D  L+             
Sbjct: 98  VIYTSGSTGKPKGVEVSHRALVNFLLSM-----ARRPGLGASDRLLAVTTISFDISVLEL 152

Query: 272 FLPL 275
            LPL
Sbjct: 153 LLPL 156

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 42.3 bits (100), Expect = 0.001
 Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 41/174 (23%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+ E+V+ + + LR  G +PG  V +     P+ V        L+L    L+  +  
Sbjct: 485 SYREMREQVVALANLLRERGVKPGDSVAV---ALPRSVF-------LTLA---LHAIVEA 531

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVM------VCFTSLTAEQKEMAV 191
           GA    LD                   PD     RL++M          +   +    A 
Sbjct: 532 GAAWLPLDTGY----------------PD----DRLKMMLEDARPSLLITTADQLPRFAD 571

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI 245
              +    ++  L       +     QP +   I++TSG++G PKGV++    I
Sbjct: 572 VPDLTSLCYNAPLAPQGAAPL--QLSQPHHTAYIIFTSGSTGRPKGVMVGQTAI 623

Length = 1296

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 41.8 bits (99), Expect = 0.001
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           TY+E+Y EV +  + L++ G + G RV IY    P+   AM AC
Sbjct: 80  TYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLAC 123

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 16/172 (9%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
           LR VI   AP   +V+  +       + + Y  TE  G T +  PD +   G+ G  SV 
Sbjct: 272 LRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGR-SVL 330

Query: 445 SELRLEEVPEMGYSPLDDPPCGEVCV----RGKTLFSGYYKNPDLTRESIIDG---WFHT 497
            +L + +         ++ P G +      R +  F  Y  +P+ T  +       W   
Sbjct: 331 GDLHICD------DDGNELPAGRIGTVYFERDRLPFR-YLNDPEKTAAAQHPAHPFWTTV 383

Query: 498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           GD+G +  +G + + DRK  +I IS G  +  +  EN   + P + D+ V G
Sbjct: 384 GDLGSVDEDGYLYLADRKSFMI-ISGGVNIYPQETENALTMHPAVHDVAVIG 434

Length = 501

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 15/117 (12%)

Query: 77  KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
            T+ E+ EE  +  + L+  G   G RV +     P+    +  C  L  + +P    LG
Sbjct: 1   WTFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
           P  + + L+ A    +                       ++ FTS T    +M + T
Sbjct: 61  PKDIRYRLERAGARAIVTSADDP---------------ALLYFTSGTTGLPKMVLHT 102

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 23/71 (32%), Positives = 34/71 (47%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ ++ +   ++ +ALR  G E G RVG+Y    P+   A  A   L  + VPL    GP
Sbjct: 8   TFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFGP 67

Query: 138 GAVNFILDHAE 148
            AV   L  + 
Sbjct: 68  DAVEHRLRDSG 78

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 9/58 (15%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHE--TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
               +YTSGT+G PK  +++H     A  V G    L         DDV    LPL H
Sbjct: 83  PAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKP-------DDVLYLCLPLYH 133

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 14/102 (13%)

Query: 459 PLDDPPCGEVCVR----GKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNG 507
           P+ +P  GE+  R     + LF GY KN D T   ++       D W+ TGD+ +   +G
Sbjct: 295 PVGEP--GEMLGRVRFKNRELFQGYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADG 352

Query: 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
               +DR  +  +  + E V+   + +V    P + +  VYG
Sbjct: 353 RWYFLDRLGDTFRW-KSENVSTGEVADVLGAIPSVAEANVYG 393

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 54/199 (27%), Positives = 78/199 (39%), Gaps = 45/199 (22%)

Query: 93  LRASGA------EPGCRVGIYGANCPQWVE-------AMEACNALSLICVPLYDTLGPGA 139
            RA GA      +PG RV I     PQ ++       A+ A      I VPL+D   PG 
Sbjct: 65  NRAVGARLQQVTKPGDRVAIL---APQNLDYLIAFFGALYAGR----IAVPLFDPAEPGH 117

Query: 140 VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199
           V  +  HA +D     D     +L+    SA+ +R    F +  A+++   +     P  
Sbjct: 118 VGRL--HAVLD-----DCTPSAILTTT-DSAEGVRKF--FRARPAKERPRVIAVDAVPDE 167

Query: 200 WDEFLHLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258
                    V    + P      I  + YTSG++  P GV +TH  + T V  V   L+ 
Sbjct: 168 ---------VGATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEG 218

Query: 259 FEDKMTVDDVYLSFLPLAH 277
            E    V     S+LP  H
Sbjct: 219 QEGDRGV-----SWLPFFH 232

Length = 631

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 52/209 (24%), Positives = 81/209 (38%), Gaps = 39/209 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+++      I +AL+A  A  G R  +   + P +V A   C    +I VP Y    P
Sbjct: 42  SYRDLDLRARTIAAALQAR-ASFGDRAVLLFPSGPDYVAAFFGCLYAGVIAVPAYP---P 97

Query: 138 GAVN--------FILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM 189
            +           I+  AE   +         LL  +  +A     ++C  +L     E 
Sbjct: 98  ESARRHHQERLLSIIADAEPRLLLTVADLRDSLLQMEELAAANAPELLCVDTLDPALAE- 156

Query: 190 AVQTGIKPYSWDEFLHLGKVNEMEILPP-QPFNICTIMYTSGTSGDPKGVVLTHETIATF 248
                    +W E             P  QP +I  + YTSG++  PKGV ++H      
Sbjct: 157 ---------AWQE-------------PALQPDDIAFLQYTSGSTALPKGVQVSH---GNL 191

Query: 249 VSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
           V+   L    F   +  DDV +S+LPL H
Sbjct: 192 VANEQLIRHGFGIDLNPDDVIVSWLPLYH 220

Length = 4334

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 40.3 bits (95), Expect = 0.003
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           TY E+ E   ++ + L A G   G  V +YG   P    A+ AC
Sbjct: 18  TYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILAC 61

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 43/179 (24%), Positives = 67/179 (37%), Gaps = 19/179 (10%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+++   V  +   L  SG  PG RV +   +  ++V A+ A +   L+ VPL D   P
Sbjct: 45  SYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPL-DPALP 103

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
            A   +   A    V + D        P  R+    R      ++  +         +  
Sbjct: 104 IAEQRVRSQAAGARVVLIDA-----DGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSV-- 156

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNI----CTIMYTSGTSGDPKGVVLTHETIATFVSGV 252
                  HL    E       P  +      IM+T GT+G PK V  TH  IA+ V  +
Sbjct: 157 -------HLDAATEPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAI 208

Length = 534

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 40.3 bits (94), Expect = 0.004
 Identities = 41/172 (23%), Positives = 64/172 (37%), Gaps = 25/172 (14%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
            Y E+     ++  AL   G  P   VG+      + V A+ A        VPL D   P
Sbjct: 538 DYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPL-DPEYP 596

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                    AE     ++D  V+ LLS           +     L A  + + +    +P
Sbjct: 597 ---------AERLAYMLEDSGVQLLLSQ--------SHLGRKLPLAAGVQVLDLD---RP 636

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
            +W E    G   E       P N+  ++YTSG++G PKG    H  ++  +
Sbjct: 637 AAWLE----GYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRL 684

Length = 5163

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 40.2 bits (94), Expect = 0.004
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 10/147 (6%)

Query: 385  LRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVS 442
            +R+ I+GG  L+ E ++   +          YG TET      C   E    G A  P+ 
Sbjct: 2450 VRMCITGGEALTGEHLQRIRQAFAPQLFFNAYGPTETVVMPLACLAPEQLEEGAASVPIG 2509

Query: 443  VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII------DG--W 494
                 R+  + +   + +     GE+ V G  L  GY+  P LT E  +      DG   
Sbjct: 2510 RVVGARVAYILDADLALVPQGATGELYVGGAGLAQGYHDRPGLTAERFVADPFAADGGRL 2569

Query: 495  FHTGDIGQILPNGVVKIIDRKKNLIKI 521
            + TGD+ ++  +G+V+ + R  + +KI
Sbjct: 2570 YRTGDLVRLRADGLVEYVGRIDHQVKI 2596

Length = 4334

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 40.1 bits (95), Expect = 0.004
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           TY+E++ EV +  +AL++ G + G RV IY    P+   AM AC
Sbjct: 100 TYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLAC 143

Length = 637

>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 20/179 (11%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSL---ICVPLYDT 134
           T  E+  +V ++ +AL A G E G  + I   + P  V A+    A+ L   + V + D+
Sbjct: 210 TLSELRSQVSRVANALDALGFEKGDAIAI---DMPMNVHAVIIYLAIILAGCVVVSIADS 266

Query: 135 LGPGAVNFILDHAEIDFVFVQDKKV---KEL-LSPDCRSAQRLRVMVCFTSLTAEQKEMA 190
             P  +   L  ++   +F QD  V   K + L      A+  + +V    L A+ K + 
Sbjct: 267 FAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIV----LPADGKSVR 322

Query: 191 VQTGIKPYSWDEFL----HLGKVNEMEILPPQPFNICT-IMYTSGTSGDPKGVVLTHET 244
           V+      SWD+FL     L + +E + +  QP    T I+++SGT+G+PK +  T  T
Sbjct: 323 VKLREGDMSWDDFLARANGLRRPDEYKAVE-QPVEAFTNILFSSGTTGEPKAIPWTQLT 380

Length = 728

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	673
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PLN02654	666	acetate-CoA ligase	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
KOG3628	1363	consensus Predicted AMP-binding protein [General f	100.0
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	100.0
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	100.0
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.96
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.94
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.92
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.91
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.87
PRK09188	365	serine/threonine protein kinase; Provisional	99.74
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.68
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.95
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	98.77
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	98.43
PLN02247	606	indole-3-acetic acid-amido synthetase	97.88
PLN02620	612	indole-3-acetic acid-amido synthetase	97.77
PLN02249	597	indole-3-acetic acid-amido synthetase	97.75
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	96.79
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	92.52

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=2e-85  Score=744.86  Aligned_cols=654  Identities=51%  Similarity=0.929  Sum_probs=542.4

Q ss_pred             cccccccccCCCCCCCCCCCCCceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHH
Q 005867            2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKE   81 (673)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~e   81 (673)
                      |-|-.|+++++++.++.|.++++||+.....+++.....+.|+.++|+++++++||++|+......++..+.++++||+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~e   84 (666)
T PLN02614          5 KKFIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQE   84 (666)
T ss_pred             ceeEEEecccccCCCCCCCCCCcccCcccccccCCCCCCCCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHH
Confidence            45667999999999999999999999877777665456678999999999999999999985310022224466799999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhh
Q 005867           82 VYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE  161 (673)
Q Consensus        82 l~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~  161 (673)
                      |.++++++|++|++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++++....
T Consensus        85 l~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~  164 (666)
T PLN02614         85 VYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISE  164 (666)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998876554


Q ss_pred             hhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeec
Q 005867          162 LLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT  241 (673)
Q Consensus       162 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~t  241 (673)
                      +..........++.++.++.............+....++++++..............++|+++|+|||||||.||||++|
T Consensus       165 ~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lt  244 (666)
T PLN02614        165 LFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS  244 (666)
T ss_pred             HHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEe
Confidence            43322211122455665553221111001111223457777765432221122334689999999999999999999999


Q ss_pred             hHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEecCCHHHHHHHhhhccCeEEEcchH
Q 005867          242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPR  321 (673)
Q Consensus       242 h~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~P~  321 (673)
                      |++++..+......+.....++..+|++++++|++|.++......+++.|+++++.+.++..+++.+++++||+++++|+
T Consensus       245 h~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~  324 (666)
T PLN02614        245 NESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPR  324 (666)
T ss_pred             cHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCeEEEecHH
Confidence            99999887665443311112467899999999999999987666678899999887778999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHH
Q 005867          322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEE  401 (673)
Q Consensus       322 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~  401 (673)
                      ++..+.............+.+.++.++++.++..+..|.......+..+.+.+..+++.++++||.+++||+++++.+.+
T Consensus       325 ~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~~  404 (666)
T PLN02614        325 VLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVES  404 (666)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHH
Confidence            99999887766666666677788888888777766666555556778888889999999989999999999999988654


Q ss_pred             HHHHhc-CCceeeecCCCCCCCcccccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCcccccc
Q 005867          402 FLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY  480 (673)
Q Consensus       402 ~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~  480 (673)
                       |.+.+ +++++++||+||+++..+..........+++|+|+|+++++|+++++++..+++.|+.|||+|+||+++.|||
T Consensus       405 -~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~  483 (666)
T PLN02614        405 -FLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYY  483 (666)
T ss_pred             -HHHHhcCCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCccccccc
Confidence             44555 5899999999999876554433332345899999999999999855554456677889999999999999999


Q ss_pred             CCchhhhhhccCCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCCCeEEEEE
Q 005867          481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVV  560 (673)
Q Consensus       481 ~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~v  560 (673)
                      ++|+.|.+.|.+|||+|||+|++|+||+|+|+||.+|+||+++|++|+|.+||++|.+||+|.+|+|+|.+.+..++|+|
T Consensus       484 ~~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~~~l~alv  563 (666)
T PLN02614        484 KREDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFESFLVAIA  563 (666)
T ss_pred             CCHHHhhhhhccCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCcceEEEEE
Confidence            99999999999999999999999999999999999999997689999999999999999999999999988677999999


Q ss_pred             ecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCC
Q 005867          561 VPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERD  640 (673)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~  640 (673)
                      +++.+....|+..++...+..+++..+++++.+.+.+.+..+.++             |+.|++|++|.+++.||+++..
T Consensus       564 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------------l~~~e~i~~~~l~~~~f~~~ng  630 (666)
T PLN02614        564 NPNQQILERWAAENGVSGDYNALCQNEKAKEFILGELVKMAKEKK-------------MKGFEIIKAIHLDPVPFDMERD  630 (666)
T ss_pred             eCCHHHHHHHHHhcCCCcCHHHHhcCHHHHHHHHHHHHHHHHHcC-------------CCCcceeeEEEEeCCCCCCcCC
Confidence            999999999999888766788999999999999999988876666             9999999999999999999999


Q ss_pred             ccccccccchHHHHHHHHHHHHHHHhhhc
Q 005867          641 LVTATLKKKRNKLLIYYQVEIDQLYEKLA  669 (673)
Q Consensus       641 p~t~~GKv~R~~l~~~~~~~~~~ly~~~~  669 (673)
                      .+|+++|++|+.+.+.|++.|+++|.+..
T Consensus       631 ~lTpt~K~kR~~i~~~y~~~i~~ly~~~~  659 (666)
T PLN02614        631 LLTPTFKKKRPQLLKYYQSVIDEMYKTTN  659 (666)
T ss_pred             cCCHhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999998653

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=1e-84  Score=738.39  Aligned_cols=659  Identities=79%  Similarity=1.305  Sum_probs=561.8

Q ss_pred             CcccccccccCCCCCCCCCCCCCceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHH
Q 005867            1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYK   80 (673)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~   80 (673)
                      ||-++.++.+..++.+++|.++++||+......++..+++++|+.++|+.+++++|+++|+.+....++..+.++++||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~   80 (660)
T PLN02430          1 MKSFAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYK   80 (660)
T ss_pred             CCceeeeecccCCCCCCCCCCCCccccccccccccCCCCCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHH
Confidence            88899999988888889999999999987666676667789999999999999999999997642112334556778999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhh
Q 005867           81 EVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK  160 (673)
Q Consensus        81 el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~  160 (673)
                      ||.+++.++|.+|.+.|+++||+|+|+++|++||+++++||+++|++++|+++.++++++.++++.++++++|+++....
T Consensus        81 el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~  160 (660)
T PLN02430         81 EVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIK  160 (660)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999876543


Q ss_pred             hhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeee
Q 005867          161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL  240 (673)
Q Consensus       161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~  240 (673)
                      ..........+.+..++.++.............+....+|++++..+...+....+..++++++|+|||||||.||||++
T Consensus       161 ~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~l  240 (660)
T PLN02430        161 ELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVL  240 (660)
T ss_pred             HHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEe
Confidence            33222222223456666665433221111111233456788887655332222334468999999999999999999999


Q ss_pred             chHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEecCCHHHHHHHhhhccCeEEEcch
Q 005867          241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVP  320 (673)
Q Consensus       241 th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~P  320 (673)
                      ||++++..+.............++.+|++++++|++|.++....+.++..|++++++..++..+++.+++++||++.++|
T Consensus       241 th~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~l~~~~pt~~~~vP  320 (660)
T PLN02430        241 THEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVP  320 (660)
T ss_pred             ecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHHHHHhCCcEEEecH
Confidence            99999988766533221111246788999999999999998877777899999988877889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHH
Q 005867          321 RVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE  400 (673)
Q Consensus       321 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~  400 (673)
                      .+++++.+..........+..+.+++++.+.+..++..|.......+.++.+.+..+++.++++||.+++||+++++++.
T Consensus       321 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~  400 (660)
T PLN02430        321 RVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIE  400 (660)
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHH
Confidence            99999999888888888888999999999999999988766666677888899999999999999999999999999998


Q ss_pred             HHHHHhcCCceeeecCCCCCCCcccccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCcccccc
Q 005867          401 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY  480 (673)
Q Consensus       401 ~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~  480 (673)
                      ++++...+++++++||+||+++..+..........+++|.|.++++++++++++.+..+.+.++.|||+|+||.++.||+
T Consensus       401 ~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~  480 (660)
T PLN02430        401 EFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYY  480 (660)
T ss_pred             HHHHHhcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCcccccc
Confidence            77766545789999999999887665544433345899999999999999866666566666678999999999999999


Q ss_pred             CCchhhhhhccCCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCCCeEEEEE
Q 005867          481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVV  560 (673)
Q Consensus       481 ~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~v  560 (673)
                      ++++.|...|.+|||+|||+|++|+||+|++.||.+|+|++++|++|+|.+||++|.+||.|.+|+|+|....+.++|+|
T Consensus       481 ~~~e~t~~~~~dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~~~~~~~A~v  560 (660)
T PLN02430        481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDSFKSMLVAVV  560 (660)
T ss_pred             CChHHhhhhhhccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecCCcceEEEEE
Confidence            99999999999999999999999999999999999999998789999999999999999999999999976567999999


Q ss_pred             ecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCC
Q 005867          561 VPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERD  640 (673)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~  640 (673)
                      +++++....|...++...++.+++...++++.+.+.+.+.+..++             |+.|+++++|++++.||+++..
T Consensus       561 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~-------------l~~~e~i~~~~l~~~~~~~~~g  627 (660)
T PLN02430        561 VPNEENTNKWAKDNGFTGSFEELCSLPELKEHILSELKSTAEKNK-------------LRGFEYIKGVILETKPFDVERD  627 (660)
T ss_pred             EcCHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhC-------------CCCceeeeEEEEECCCCCCcCC
Confidence            999999999998888777889999999999999999999987667             9999999999999999999999


Q ss_pred             ccccccccchHHHHHHHHHHHHHHHhhhcCCC
Q 005867          641 LVTATLKKKRNKLLIYYQVEIDQLYEKLAPGR  672 (673)
Q Consensus       641 p~t~~GKv~R~~l~~~~~~~~~~ly~~~~~~~  672 (673)
                      .+|+++|++|+.+.+.|++.|++||.+..+++
T Consensus       628 ~lT~t~K~~R~~i~~~y~~~i~~ly~~~~~~~  659 (660)
T PLN02430        628 LVTATLKKRRNNLLKYYQVEIDEMYRKLAEKR  659 (660)
T ss_pred             cCChhhhhhhHHHHHHHHHHHHHHHHhhhhcc
Confidence            99999999999999999999999999988765

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=8.7e-85  Score=689.15  Aligned_cols=629  Identities=46%  Similarity=0.765  Sum_probs=574.4

Q ss_pred             Cceecccc--CCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCC
Q 005867           23 PVYRNLLA--SNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEP  100 (673)
Q Consensus        23 ~~~~~~~~--~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~  100 (673)
                      ++||+...  ..+++..+....|+++.|++.++.+|+.+++......+ ..++|+++||.|+.+++..++..|++.|+++
T Consensus        54 ~~~~s~~~~~~~~~~~~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~-~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~  132 (691)
T KOG1256|consen   54 GSRRSAVLPREELFSCPFDGPLTLYEGFRRSVEKSGNGPMLGTRVIVD-GKGPYEWLTYKQVYERAENLGSGLRKLGVKE  132 (691)
T ss_pred             CceeeeeccCCCCCCCCCCCcccHHHHhhcchhccCCCCceeEEeccc-CCCCcEEEEHHHHHHHHHHHHHHHHHhCCCC
Confidence            79999888  45667778899999999999999999999999874323 5688999999999999999999999999999


Q ss_pred             CCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEc-chhhhhhhccccc-ccccceEEEE
Q 005867          101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ-DKKVKELLSPDCR-SAQRLRVMVC  178 (673)
Q Consensus       101 gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~-~~~~~~~~~~~~~-~~~~~~~v~~  178 (673)
                      ++.|+|+.-|++||+++.+||...|.++|||...++++.+.++++.+++.++|++ ++....+++.... ..+.++.++.
T Consensus       133 ~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~  212 (691)
T KOG1256|consen  133 DSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQ  212 (691)
T ss_pred             CceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEE
Confidence            9999999999999999999999999999999999999999999999999999999 5666666666554 3678999999


Q ss_pred             eCCCcHHHHHHHhhCCCceecHHHHHhcCccCCccC-CCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhc
Q 005867          179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI-LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD  257 (673)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~  257 (673)
                      ++....+......+.+....+|+++...+....... .+..|+|.|.|.|||||||.||||++||+|++..+........
T Consensus       213 ~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~  292 (691)
T KOG1256|consen  213 LDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSA  292 (691)
T ss_pred             ecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhh
Confidence            999998888888888899999999999996555555 4889999999999999999999999999999997654333222


Q ss_pred             cccC-CCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEecCCHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHh
Q 005867          258 QFED-KMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE  336 (673)
Q Consensus       258 ~~~~-~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~  336 (673)
                      .... .....|++++++|+.|++....-...++.|+.+.++.+|+..+.+.++..+||.+.++|.+|.++.+.+++....
T Consensus       293 ~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~  372 (691)
T KOG1256|consen  293 AENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQK  372 (691)
T ss_pred             cccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhc
Confidence            2221 223479999999999999999888888999999999999999999999999999999999999999999999999


Q ss_pred             hchHHHHHHHHHHHHHH-HHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeec
Q 005867          337 LRPLRRRIFDALYKYKL-AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGY  415 (673)
Q Consensus       337 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~Y  415 (673)
                      ...++++++++|+..++ -.+..|-... .++++|.+.+.++++.+++++|.+++|++|+++++..+++..+|++|+++|
T Consensus       373 sgflkr~l~~~A~~~k~~~~~~~G~~~~-~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~eGY  451 (691)
T KOG1256|consen  373 SGFLKRKLFNFAMAYKLEHRLMKGKSRS-RDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLEGY  451 (691)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhCCCCcc-cchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeeecc
Confidence            99999999999999999 5577775544 799999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCc
Q 005867          416 GLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGW  494 (673)
Q Consensus       416 G~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~  494 (673)
                      |+|||++.++....++. ..+++|.|+|+++++++|+++.+....+.  .|||||+|+++|.||+++|+.|.+++ .|||
T Consensus       452 GlTEts~g~~~~~~~d~-~lgsvG~p~p~~~vKL~dvpe~ny~a~~~--~GEIcirG~~Vf~GYyK~p~~T~e~ideDGW  528 (691)
T KOG1256|consen  452 GLTETSAGTTLTLPGDN-VLGSVGPPVPGNEVKLVDVPEMNYDADGS--KGEICVRGPNVFMGYYKDPEKTAEAIDEDGW  528 (691)
T ss_pred             cccccCCceEeccCCCC-CCCCcCCcccCceEEEechHHhCcCcCCC--cceEEEecchhceeccCChHHHhhhhccccc
Confidence            99999977666666665 56999999999999999999988877763  79999999999999999999999999 8999


Q ss_pred             cccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCCCeEEEEEecChhHHHHHHHHc
Q 005867          495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSN  574 (673)
Q Consensus       495 ~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~v~~~~~~~~~~~~~~  574 (673)
                      ++|||+|+|+++|.|.+.||.++++|++.|++|.|+.||++....+.|.+.+|.+.+.+..++|+|+++++..+.|+..+
T Consensus       529 LhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~~~LvaiVvpd~e~~~~~a~~~  608 (691)
T KOG1256|consen  529 LHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLRSFLVAIVVPDPEVLKSWAAKD  608 (691)
T ss_pred             cccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcchhcEEEEEecChhhchhhHHHc
Confidence            99999999999999999999999999999999999999999999999999999999888899999999999999999977


Q ss_pred             CCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 005867          575 GHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  654 (673)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~  654 (673)
                      +..+++.++|...++++.+.+++.+..++++             |..+...+.|.+.+.||+++...+||+-|++|..|.
T Consensus       609 ~~~~~~eelc~n~~~k~~vl~el~~~~~~~~-------------l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~  675 (691)
T KOG1256|consen  609 GVKGTFEELCRNLDVKEAVLSELVKVGKENG-------------LKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLL  675 (691)
T ss_pred             cCchhHHHHhcChhhHHHHHHHHHHHHhhhh-------------ccChhhEeeEEEecccccccCCccchhhhhhhHHHH
Confidence            7789999999999999999999999999888             999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q 005867          655 IYYQVEIDQLYEKLA  669 (673)
Q Consensus       655 ~~~~~~~~~ly~~~~  669 (673)
                      ++|+++||++|...+
T Consensus       676 ~~yk~~Id~mY~~~~  690 (691)
T KOG1256|consen  676 KYYKKQIDELYKEIK  690 (691)
T ss_pred             HHHHHHHHHHHhhcc
Confidence            999999999998754

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=3e-83  Score=727.78  Aligned_cols=652  Identities=50%  Similarity=0.900  Sum_probs=543.1

Q ss_pred             cccccCCCCCCCCCCCCCceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHH
Q 005867            6 AQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEE   85 (673)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~   85 (673)
                      ..+||---++++.|.++++||+......+.+.+....|+.++|+.+++++|+++|+......++..+.++++||+||.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~   86 (660)
T PLN02861          7 VKVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDA   86 (660)
T ss_pred             eeeccCCCCCCCCCCCCCcccccccccccccCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHH
Confidence            34677777888999999999998877777667777889999999999999999999753111333456778999999999


Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcc
Q 005867           86 VLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP  165 (673)
Q Consensus        86 v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~  165 (673)
                      +.++|++|.+.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++|++++++++|+++.....+...
T Consensus        87 v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~  166 (660)
T PLN02861         87 AIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSC  166 (660)
T ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988765544332


Q ss_pred             cccccccceEEEEeCCCcHHHHHHHhhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHH
Q 005867          166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI  245 (673)
Q Consensus       166 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l  245 (673)
                      .......++.++.+++.................+|.++....... ....+..++++++|+|||||||.||||++||+++
T Consensus       167 ~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l  245 (660)
T PLN02861        167 LPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLD-CELPPKQKTDICTIMYTSGTTGEPKGVILTNRAI  245 (660)
T ss_pred             hhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCccc-CCCCccCCCceEEEEecCCCCCCCCEEEEecHHH
Confidence            211112355666665432211111111223345777776544221 1223456899999999999999999999999999


Q ss_pred             HHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEecCCHHHHHHHhhhccCeEEEcchHHHHH
Q 005867          246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEK  325 (673)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~  325 (673)
                      +..+......+......+..+|++++++|++|++++...+.+++.|+++++...++..+++.|++++||+++++|+++..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~  325 (660)
T PLN02861        246 IAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDR  325 (660)
T ss_pred             HHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCcEEeechHHHHH
Confidence            98877655443111112467899999999999999877667899999998886689999999999999999999999999


Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHH
Q 005867          326 IHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRV  405 (673)
Q Consensus       326 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~  405 (673)
                      |.............+.+.+++++.+.+...+..|.......+..+.+.++.+++.+++++|.+++||+++++++.+ |.+
T Consensus       326 l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~-~~~  404 (660)
T PLN02861        326 IYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEE-FLR  404 (660)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHH-HHH
Confidence            9988877777778888999999999888887776555555677888899999999999999999999999999866 444


Q ss_pred             hcC-CceeeecCCCCCCCcccccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCch
Q 005867          406 TCC-AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD  484 (673)
Q Consensus       406 ~~g-~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~  484 (673)
                      .++ .+++++||+||+++.++..........+++|+|+++++++++++++.+....+.++.|||+|+||.++.|||++|+
T Consensus       405 ~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe  484 (660)
T PLN02861        405 VTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQD  484 (660)
T ss_pred             HHcCCCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHH
Confidence            555 4799999999998765544333223358999999999999998544443333445679999999999999999999


Q ss_pred             hhhhhccCCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCCCeEEEEEecCh
Q 005867          485 LTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCE  564 (673)
Q Consensus       485 ~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~v~~~~  564 (673)
                      .|.+.|.+|||+|||+|++|+||+|+|+||.+|+|++++|++|+|.+||++|.+||.|.+|+|+|.+.++.++|+|++..
T Consensus       485 ~T~~~f~dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~~~~~~A~vv~~~  564 (660)
T PLN02861        485 LTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSFESFLVAVVVPDR  564 (660)
T ss_pred             HHHhhhhccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCCcceeEEEEEcCH
Confidence            99999999999999999999999999999999999977899999999999999999999999999886679999999999


Q ss_pred             hHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCcccc
Q 005867          565 EDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTA  644 (673)
Q Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~  644 (673)
                      +....|...++...++.+++...+....+.+++.+.++...             |+.|++++.+.++++||+++..++|+
T Consensus       565 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------l~~~e~i~~~~l~~~~ft~~ng~lT~  631 (660)
T PLN02861        565 QALEDWAANNNKTGDFKSLCKNLKARKYILDELNSTGKKLQ-------------LRGFEMLKAIHLEPNPFDIERDLITP  631 (660)
T ss_pred             HHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcC-------------CCCcceeeEEEEeCCCCCcccCcCCH
Confidence            98888988776556788888888899999999999988777             99999999999999999999999999


Q ss_pred             ccccchHHHHHHHHHHHHHHHhhhcCCC
Q 005867          645 TLKKKRNKLLIYYQVEIDQLYEKLAPGR  672 (673)
Q Consensus       645 ~GKv~R~~l~~~~~~~~~~ly~~~~~~~  672 (673)
                      ++|++|+.+++.|+++|+++|.....++
T Consensus       632 t~K~~R~~i~~~y~~~I~~lY~~~~~~~  659 (660)
T PLN02861        632 TFKLKRPQLLKYYKDCIDQLYSEAKGGK  659 (660)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHhhhhcC
Confidence            9999999999999999999999876554

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1e-80  Score=708.21  Aligned_cols=631  Identities=40%  Similarity=0.663  Sum_probs=527.3

Q ss_pred             CCCCCCCCCceeccccCCCCCC---CCCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHH
Q 005867           15 KDGKPSVGPVYRNLLASNGFPS---VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVS   91 (673)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~   91 (673)
                      .-.+++++.+||+...+.++-+   .+....++.++|+.+++++||++|+......++..+.++.+||+||.++++++|+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~   93 (651)
T PLN02736         14 EKLQTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGS   93 (651)
T ss_pred             CCCCCCCCCeecCccccccccccCCCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHH
Confidence            3445677889998766644433   2456679999999999999999999542101344455788999999999999999


Q ss_pred             HHHHcCCCCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccc
Q 005867           92 ALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ  171 (673)
Q Consensus        92 ~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~  171 (673)
                      +|++.|+++||+|+|+++|+++++++++||+++|++++|+++.++.+++.++++.++++++|++.+....+..... ..+
T Consensus        94 ~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~-~~~  172 (651)
T PLN02736         94 GLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLS-EIP  172 (651)
T ss_pred             HHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhh-cCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999877665543222 334


Q ss_pred             cceEEEEeCCCcHHHHHHHhhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhh
Q 005867          172 RLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG  251 (673)
Q Consensus       172 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~  251 (673)
                      .++.++..+..................+|+++.+.............++++++|+|||||||.||||++||++++..+..
T Consensus       173 ~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~  252 (651)
T PLN02736        173 SVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAG  252 (651)
T ss_pred             CceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHH
Confidence            55566665432221111111123345678888765432222233457899999999999999999999999999998888


Q ss_pred             hhhhhccccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEecCCHHHHHHHhhhccCeEEEcchHHHHHHHHHHH
Q 005867          252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK  331 (673)
Q Consensus       252 ~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~  331 (673)
                      ....+     ++..+|++++++|++|.+++...+.+++.|+++++.+.++..+++.++++++|+++++|+++..+.+...
T Consensus       253 ~~~~~-----~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~  327 (651)
T PLN02736        253 SSLST-----KFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYDGIT  327 (651)
T ss_pred             HHhcc-----CCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEecchHHHHHHHHHHH
Confidence            76665     6788999999999999999988788899999999888888999999999999999999999999998888


Q ss_pred             HHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCce
Q 005867          332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFL  411 (673)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v  411 (673)
                      ........+.+.++++++..+...+..|..   ..+.++.+.++..+..+++++|.+++||+++++++.+++.+.+|+++
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~  404 (651)
T PLN02736        328 NAVKESGGLKERLFNAAYNAKKQALENGKN---PSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRV  404 (651)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHcCCC---CCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCe
Confidence            777777888888888888777666665522   23456777788888888899999999999999999999998889999


Q ss_pred             eeecCCCCCCCcccccCCCCccccCCcCCCccceeEEEeecCCCCCC-CCCCCCCceEEEecCCccccccCCchhhhhhc
Q 005867          412 VQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI  490 (673)
Q Consensus       412 ~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~-~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~  490 (673)
                      ++.||+||+++.++...... ...+++|.|+|+++++|++.+++... ....++.|||+++||+++.|||++++.+.+.|
T Consensus       405 ~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~  483 (651)
T PLN02736        405 LEGYGMTETSCVISGMDEGD-NLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVI  483 (651)
T ss_pred             EEEechHHhchheeccCCCC-CCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhh
Confidence            99999999987766544433 34489999999999999984332111 11122469999999999999999999999999


Q ss_pred             -cCCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCCCeEEEEEecChhHHHH
Q 005867          491 -IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKK  569 (673)
Q Consensus       491 -~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~v~~~~~~~~~  569 (673)
                       .+|||+|||+|++|+||+|+|+||.+|+|++++|++|+|.+||++|.+||+|.+|+|+|....+.++|+|+++++....
T Consensus       484 ~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~~~A~vv~~~~~~~~  563 (651)
T PLN02736        484 DEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVVVDPEVLKA  563 (651)
T ss_pred             ccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEecCCCceeEEEEEeCHHHHHH
Confidence             6899999999999999999999999999997689999999999999999999999999976567999999999998888


Q ss_pred             HHHHcCC-CCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCcccccccc
Q 005867          570 WAYSNGH-AGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKK  648 (673)
Q Consensus       570 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv  648 (673)
                      |....+. ..++.++|..+++++.+.+.|.+.++.++             |+.|++|++|.+++++|++++.++|++||+
T Consensus       564 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------------l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki  630 (651)
T PLN02736        564 WAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQ-------------LRGFEFAKAVTLVPEPFTVENGLLTPTFKV  630 (651)
T ss_pred             HHHHcCCCccCHHHHhcCHHHHHHHHHHHHHHHHhcC-------------CCcceeeeEEEEeCCCCcCCCCcCChhhhh
Confidence            8877665 47799999999999999999999988767             999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHhhh
Q 005867          649 KRNKLLIYYQVEIDQLYEKL  668 (673)
Q Consensus       649 ~R~~l~~~~~~~~~~ly~~~  668 (673)
                      +|++|++.|+++|+++|...
T Consensus       631 ~R~~i~~~~~~~i~~~y~~~  650 (651)
T PLN02736        631 KRPQAKAYFAKAISDMYAEL  650 (651)
T ss_pred             hHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999754

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=9.6e-78  Score=685.42  Aligned_cols=625  Identities=35%  Similarity=0.577  Sum_probs=516.2

Q ss_pred             CceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeec--------ccC------CCCCceeeeHHHHHHHHHH
Q 005867           23 PVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPF--------VDG------KFGPYVWKTYKEVYEEVLQ   88 (673)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~--------~d~------~~~~~~~~Ty~el~~~v~~   88 (673)
                      .+|||...+.......+...|+.++|+++++++||++|+.....        .++      ..++|+++||+||.+++.+
T Consensus        39 ~~~r~~~~~~~~~~~~~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~  118 (696)
T PLN02387         39 YAIRNARFPELVETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCN  118 (696)
T ss_pred             CceecCccccccccCCCCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHH
Confidence            35999986633333446778999999999999999999954210        012      1256788999999999999


Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhccccc
Q 005867           89 IVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR  168 (673)
Q Consensus        89 lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~  168 (673)
                      +|++|.+.|+++||+|+|+++|++||+++++||+++|++++|+++.++++++.++|+.++++++|++.+....+.... .
T Consensus       119 lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~-~  197 (696)
T PLN02387        119 FASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDIS-S  197 (696)
T ss_pred             HHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHh-h
Confidence            999999999999999999999999999999999999999999999999999999999999999999987766654432 2


Q ss_pred             ccccceEEEEeCCCcHHHHHH-HhhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHH
Q 005867          169 SAQRLRVMVCFTSLTAEQKEM-AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT  247 (673)
Q Consensus       169 ~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~  247 (673)
                      ..+.++.++.+++........ .........+|+++...+...........++|+++|+|||||||.||||++||++++.
T Consensus       198 ~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~  277 (696)
T PLN02387        198 QLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVA  277 (696)
T ss_pred             ccCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHH
Confidence            334566777776543211100 0112334567888776543333233345789999999999999999999999999998


Q ss_pred             HHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEecC----C-----HHHHHHHhhhccCeEEEc
Q 005867          248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG----D-----LNALRDDLMELKPTLLAG  318 (673)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~~~----~-----~~~~~~~i~~~~~t~l~~  318 (673)
                      .+......+    ..+..+|++++++|++|++++...+.++..|+++.+...    +     +..+...+++++||++.+
T Consensus       278 ~~~~~~~~~----~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~  353 (696)
T PLN02387        278 TVAGVMTVV----PKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTA  353 (696)
T ss_pred             HHHHHHhhc----CCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEe
Confidence            887754432    146789999999999999998877667777877765332    1     233566789999999999


Q ss_pred             chHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCC--cCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCC
Q 005867          319 VPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK--QREASPLADLLAFRKVKARLGGRLRLVISGGAPLS  396 (673)
Q Consensus       319 ~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~  396 (673)
                      +|.++.++.+...........+.+.+++++...++..+...+.  ....+.+++.+.+..+++.+++++|.+++||++++
T Consensus       354 vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~  433 (696)
T PLN02387        354 VPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLS  433 (696)
T ss_pred             hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCC
Confidence            9999999998877766677778888899888877766542110  12356688899999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCccccCCcCCCccceeEEEeecCCCCCCCC-CCCCCceEEEecCCc
Q 005867          397 TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPL-DDPPCGEVCVRGKTL  475 (673)
Q Consensus       397 ~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~-~~g~~GEl~v~gp~~  475 (673)
                      +++.++++..+|++++++||+||+++.++....... ..+++|.|+++++++|+|.++++.... .+++.|||+|+||.+
T Consensus       434 ~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~-~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v  512 (696)
T PLN02387        434 GDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDT-SVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSV  512 (696)
T ss_pred             HHHHHHHHHHcCCCeeEeechhhcccceeecCcccC-CCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcc
Confidence            999998888889999999999999877665544333 348999999999999999555443222 223479999999999


Q ss_pred             cccccCCchhhhhhcc---CC--ccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEec
Q 005867          476 FSGYYKNPDLTRESII---DG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGD  550 (673)
Q Consensus       476 ~~gy~~~~~~~~~~~~---~g--~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~  550 (673)
                      +.|||++|+.|.+.|.   +|  ||+|||+|++|+||+|+++||.+|+||+++|++|+|.+||++|.+||.|.+|+|++.
T Consensus       513 ~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~  592 (696)
T PLN02387        513 TLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHAD  592 (696)
T ss_pred             cchhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEec
Confidence            9999999999999982   35  999999999999999999999999999867999999999999999999999999998


Q ss_pred             CCCCeEEEEEecChhHHHHHHHHcCC-CCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEE
Q 005867          551 SLKSMLVAVVVPCEEDTKKWAYSNGH-AGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVI  629 (673)
Q Consensus       551 ~~~~~~~a~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~  629 (673)
                      +....++|+|+++++....|+...+. ..++.++|...++.+.+.+.+.+.++..+             |+.|++|++|.
T Consensus       593 ~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------------l~~~e~~~~i~  659 (696)
T PLN02387        593 PFHSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAAR-------------LEKFEIPAKIK  659 (696)
T ss_pred             CCcceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcC-------------CCCcceeeEEE
Confidence            87788999999999999999988876 47799999999999999999999987667             99999999999


Q ss_pred             EecCCCCCCCCccccccccchHHHHHHHHHHHHHHHh
Q 005867          630 LDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYE  666 (673)
Q Consensus       630 ~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~~~ly~  666 (673)
                      ++++||+++...+|+++|++|+.+.+.|+++|++||.
T Consensus       660 l~~~~~t~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~  696 (696)
T PLN02387        660 LLPEPWTPESGLVTAALKLKREQIRKKFKDDLKKLYE  696 (696)
T ss_pred             EECCCCCCCCCcCChhhhhhhHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999995

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.2e-77  Score=677.10  Aligned_cols=615  Identities=25%  Similarity=0.388  Sum_probs=498.8

Q ss_pred             CCCCceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHc---
Q 005867           20 SVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS---   96 (673)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~---   96 (673)
                      .++++||.......  +......||.++|.++++++|+++|+++.   + .+..++++||+||.+++.++|++|.+.   
T Consensus        41 ~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~p~~~Al~~~---~-~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~  114 (746)
T PTZ00342         41 NESSVYCMKDHKKK--SSLYVYKHIMKLLLEKYKLNNNKIAIVEH---S-CGEPQNYITYGNFFKKVLSFSHSLNTYEGK  114 (746)
T ss_pred             CCCCceecCchhhc--ccccccchHHHHHHHHHhhcCCceeEecc---C-CCCCceeeeHHHHHHHHHHHHHHHHHHhhc
Confidence            44559996665444  33345789999999999999999999853   2 222467899999999999999999974   


Q ss_pred             CCCCC-----------CEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcc
Q 005867           97 GAEPG-----------CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP  165 (673)
Q Consensus        97 gv~~g-----------d~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~  165 (673)
                      |+++|           |+|+|+++|+++|+++.+||+++|+++||+++.++.+++.++|++++++++|++.+....+...
T Consensus       115 Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~  194 (746)
T PTZ00342        115 GIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLER  194 (746)
T ss_pred             CCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHh
Confidence            99998           9999999999999999999999999999999999999999999999999999988777665443


Q ss_pred             cccccccceEEEEeCCCcHH------------------HH---------------------------------------H
Q 005867          166 DCRSAQRLRVMVCFTSLTAE------------------QK---------------------------------------E  188 (673)
Q Consensus       166 ~~~~~~~~~~v~~~~~~~~~------------------~~---------------------------------------~  188 (673)
                      . ...+.++.++.++.....                  ..                                       .
T Consensus       195 ~-~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  273 (746)
T PTZ00342        195 K-NELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKE  273 (746)
T ss_pred             h-ccCCCceEEEEECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHH
Confidence            2 234556677777542110                  00                                       0


Q ss_pred             HHhhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcE
Q 005867          189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDV  268 (673)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~  268 (673)
                      .....+.....|+++.... .......+..++++++|+|||||||.||||++||+++++.+........   ......++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~---~~~~~~d~  349 (746)
T PTZ00342        274 KAKKLGISIILFDDMTKNK-TTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSI---FKKYNPKT  349 (746)
T ss_pred             HhhcCCCEEEEHHHHHhhc-ccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhccc---ccCCCCCe
Confidence            0001112233445544332 1112233457899999999999999999999999999988766543210   01234589


Q ss_pred             EEEecchHhHHHHHHhHHHhhcCcEEEEecCCHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 005867          269 YLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (673)
Q Consensus       269 ~l~~~p~~~~~gl~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (673)
                      +++++|++|++++...+.+++.|+++++.+.++..+++.|++++||+++++|.++.+|...+.+.....+.+.+.+++++
T Consensus       350 ~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a  429 (746)
T PTZ00342        350 HLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKI  429 (746)
T ss_pred             EEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            99999999999998777889999999998778999999999999999999999999999888777777777888888988


Q ss_pred             HHHHHHHhhhcCCcCCcchhHHHH--hHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccc
Q 005867          349 YKYKLAWMNMGYKQREASPLADLL--AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV  426 (673)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~  426 (673)
                      .+.+.......     .++.++.+  .++.+++.++++||.+++||+++++++.++|+..+|++++++||+||+++..+.
T Consensus       430 ~~~~~~~~~~~-----~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~~  504 (746)
T PTZ00342        430 LSLRKSNNNGG-----FSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFV  504 (746)
T ss_pred             HHHHHHhhcCC-----cchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceeee
Confidence            88776643321     22334333  478889999999999999999999999999998899999999999999877665


Q ss_pred             cCCCCccccCCcCCCc-cceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCceEEEC
Q 005867          427 CFPDEMCMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQIL  504 (673)
Q Consensus       427 ~~~~~~~~~~~~G~~~-~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~  504 (673)
                      ..... ...+++|.|+ |++++++++.++....  +.++.|||+++||.++.|||++|+.|.+.| .||||+|||+|++|
T Consensus       505 ~~~~~-~~~gsvG~p~~pg~e~ki~d~~~~~~~--~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d  581 (746)
T PTZ00342        505 QHADD-NNTESIGGPISPNTKYKVRTWETYKAT--DTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQIN  581 (746)
T ss_pred             ccCCC-CCcccccCcCCCcEEEEEecccccccC--CCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEEC
Confidence            54433 3458999998 9999999984432221  223579999999999999999999999999 59999999999999


Q ss_pred             CCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCCCeEEEEEecChhHHHHHHHHcC------C-C
Q 005867          505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNG------H-A  577 (673)
Q Consensus       505 ~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~------~-~  577 (673)
                      +||+|+++||.+|+|++++|++|+|.+||++|.+||.|.+|+|+|.+..+.++|+|+++.+...+|+..++      . .
T Consensus       582 ~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~  661 (746)
T PTZ00342        582 KNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDGPLAIISVDKYLLFKCLKDDNMLESTGINE  661 (746)
T ss_pred             CCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCccccEEEEECCHHHHHHHHHhcCCccccccCc
Confidence            99999999999999998789999999999999999999999999986567999999999999999998753      2 2


Q ss_pred             CcHHH-----HhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHH
Q 005867          578 GSFLE-----LCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNK  652 (673)
Q Consensus       578 ~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~  652 (673)
                      .++.+     .+...++.+++.+.+.+..+..+             |++|++++.|.++++||+.+. .+||+.|++|+.
T Consensus       662 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------------l~~~e~i~~~~l~~~~~t~~~-~lTpt~KlkR~~  727 (746)
T PTZ00342        662 KNYLEKLTDETINNNIYVDYVKGKMLEVYKKTN-------------LNRYNIINDIYLTSKVWDTNN-YLTPTFKVKRFY  727 (746)
T ss_pred             ccHHHHhhhhhhccHHHHHHHHHHHHHHHHHhC-------------CccceeeeeEEEecCCCCCCC-ccChhhhhhHHH
Confidence            34544     34555778999999999977656             999999999999999999976 699999999999


Q ss_pred             HHHHHH---HHHHHHHhh
Q 005867          653 LLIYYQ---VEIDQLYEK  667 (673)
Q Consensus       653 l~~~~~---~~~~~ly~~  667 (673)
                      +.+.|+   +.|+++|..
T Consensus       728 v~~~y~~~i~~i~~~y~~  745 (746)
T PTZ00342        728 VFKDYAFFIDQVKKIYKN  745 (746)
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence            999999   677888864

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=3.5e-78  Score=609.26  Aligned_cols=628  Identities=37%  Similarity=0.655  Sum_probs=561.9

Q ss_pred             CCCCCCCceeccccCCCCCCCC-CCCCcHHHHHHHHHHhCCCCCceeeeec--------ccCC------CCCceeeeHHH
Q 005867           17 GKPSVGPVYRNLLASNGFPSVD-SDLNTAWDIFSMSVQKYPGNRMLGWRPF--------VDGK------FGPYVWKTYKE   81 (673)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~-~~~~tl~~~l~~~a~~~pd~~a~~~~~~--------~d~~------~~~~~~~Ty~e   81 (673)
                      +.+.|+..|||.....++-+.+ +...|++++|+++++++.++.++-..++        .||+      -+++.++||.|
T Consensus        15 ~n~~e~~p~Rnv~~~~~L~~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~e   94 (678)
T KOG1180|consen   15 ANEHETAPYRNVRSFDGLVSPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNE   94 (678)
T ss_pred             CCCCCCccccccccCCCccCCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHH
Confidence            3567889999999877776666 6789999999999999999999876543        2443      36678999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCE-EEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhh
Q 005867           82 VYEEVLQIVSALRASGAEPGCR-VGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK  160 (673)
Q Consensus        82 l~~~v~~lA~~L~~~gv~~gd~-V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~  160 (673)
                      +..++..+|.+|.+.|++++++ ++|+++.+.+|+.+++||++.+.++|.+...+..+.+.|-|.+++++.+|++.+...
T Consensus        95 v~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~  174 (678)
T KOG1180|consen   95 VYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLP  174 (678)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHH
Confidence            9999999999999999997777 999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhhcccccccccceEEEEeCCCcHHHH----HHHhhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcc
Q 005867          161 ELLSPDCRSAQRLRVMVCFTSLTAEQK----EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPK  236 (673)
Q Consensus       161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK  236 (673)
                      .+.... .....++.++.++..+....    ..........++|+++...++....++.+..|+|+|+|+|||||||.||
T Consensus       175 kl~~~l-~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PK  253 (678)
T KOG1180|consen  175 KLKAPL-KQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPK  253 (678)
T ss_pred             HHHHHH-hccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCc
Confidence            664443 45578889999885332222    2123356889999999999977766666778999999999999999999


Q ss_pred             eeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEecC-C----HHHH----HHH
Q 005867          237 GVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-D----LNAL----RDD  307 (673)
Q Consensus       237 ~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~~~-~----~~~~----~~~  307 (673)
                      ||+++|.|+++.+.......    ..+.+.|+++.++|+.|++-+.+-+.+++.|+++-.-+. +    ...+    -..
T Consensus       254 GVml~H~NiVA~~~G~~~~v----~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD  329 (678)
T KOG1180|consen  254 GVMLTHSNIVAGVTGVGENV----PELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGD  329 (678)
T ss_pred             eEEEecccHHhhhhhhcccC----cccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcCc
Confidence            99999999999998876655    268899999999999999999999999999999987654 1    1111    123


Q ss_pred             hhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhh-hcCCcCCcchhHHHHhHHHHHHHcCCcee
Q 005867          308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN-MGYKQREASPLADLLAFRKVKARLGGRLR  386 (673)
Q Consensus       308 i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lr  386 (673)
                      +..++||+|.++|.++.++-+...+.....+.+.+.+|..++..|+..++ .|    ..+++++.+.|.+.|..++++||
T Consensus       330 ~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g----~~s~~ld~lVFkKIr~~lGG~lR  405 (678)
T KOG1180|consen  330 LTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNG----PGSPLLDALVFKKIRALLGGNLR  405 (678)
T ss_pred             cccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccC----CchhhHHHHHHHHHHHHhCCceE
Confidence            45789999999999999999999999999999999999999999988887 33    35789999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCc
Q 005867          387 LVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCG  466 (673)
Q Consensus       387 ~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~G  466 (673)
                      .+++||++++++..+++.-.+.+|+.++||.||+++..+...+.+... +.+|.|++.++++++|.++++..+-+..+.|
T Consensus       406 ~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~-g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrG  484 (678)
T KOG1180|consen  406 YILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFST-GRVGAPLPCCEIKLVDWEEGGYFAKNKPPRG  484 (678)
T ss_pred             EEEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhccc-ccccCCccceEEEEEEhhhcCccCCCCCCCc
Confidence            999999999999999999999999999999999999888777666555 8999999999999999999988877766789


Q ss_pred             eEEEecCCccccccCCchhhhhhc--cCC--ccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCc
Q 005867          467 EVCVRGKTLFSGYYKNPDLTRESI--IDG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII  542 (673)
Q Consensus       467 El~v~gp~~~~gy~~~~~~~~~~~--~~g--~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V  542 (673)
                      ||||+|+.+..||+++++.|.+.|  .+|  ||+|||+|++.+||+|.++.|++|.+|+.+|+.|+++.+|++++..|.|
T Consensus       485 EI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V  564 (678)
T KOG1180|consen  485 EILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYV  564 (678)
T ss_pred             eEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcch
Confidence            999999999999999999999999  489  9999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEecCCCCeEEEEEecChhHHHHHHHHcCCC-CcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCcc
Q 005867          543 EDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHA-GSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRG  621 (673)
Q Consensus       543 ~~~~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~  621 (673)
                      ...+|++.+....++++|++++.....|+...|.. .+|+++|.+.++.+.+.++|.++.+..+             |..
T Consensus       565 ~NICvyAd~~~s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~-------------L~~  631 (678)
T KOG1180|consen  565 DNICVYADSNKSKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQK-------------LER  631 (678)
T ss_pred             hheEEecccccceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcc-------------ccc
Confidence            99999999888899999999999999999998884 5999999999999999999999998888             999


Q ss_pred             ceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhh
Q 005867          622 FEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK  667 (673)
Q Consensus       622 ~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~~~ly~~  667 (673)
                      +++|..|++.++|+|.++.-.|+.-|+.|+.++..|+++||++|.+
T Consensus       632 iEip~~I~l~~e~WTPenGlvT~A~KLKRk~I~~~~k~ei~~~Y~~  677 (678)
T KOG1180|consen  632 IEIPAKIVLSPEPWTPENGLVTAALKLKRKEILAAYKKEIDRLYKE  677 (678)
T ss_pred             ccccceeEecCCCcCCCccccHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999975

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-75  Score=669.42  Aligned_cols=623  Identities=30%  Similarity=0.488  Sum_probs=507.1

Q ss_pred             CCCCCceeccccCC----CCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeec----------ccCC--------CCCcee
Q 005867           19 PSVGPVYRNLLASN----GFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPF----------VDGK--------FGPYVW   76 (673)
Q Consensus        19 ~~~~~~~~~~~~~~----~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~----------~d~~--------~~~~~~   76 (673)
                      +.++++||......    .+.....+..|+.++|..+++++||++|+.+...          .++.        .+++++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (700)
T PTZ00216         42 ENASAIYRIAGVTDEEHERLRNEWYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRY  121 (700)
T ss_pred             CCCCCcccCcccccchhcccccccCCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceE
Confidence            34577999765442    2222224567999999999999999999987510          0111        124689


Q ss_pred             eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcc
Q 005867           77 KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD  156 (673)
Q Consensus        77 ~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~  156 (673)
                      +||+||.++++++|++|.+.|+++||+|+|+++|++|++++++||+++|++++|+++.++++++.+++++++++++|++.
T Consensus       122 lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~  201 (700)
T PTZ00216        122 ITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNG  201 (700)
T ss_pred             eEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecHHHHHhcCc--cCC-ccCCCCCCCceEEEEeccCCCC
Q 005867          157 KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK--VNE-MEILPPQPFNICTIMYTSGTSG  233 (673)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~a~i~~TSGTTG  233 (673)
                      .....+.............++.++.....    .........+|+++...+.  ... ....+..++++++++|||||||
T Consensus       202 ~~~~~l~~~~~~~~~~~~~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG  277 (700)
T PTZ00216        202 KNVPNLLRLMKSGGMPNTTIIYLDSLPAS----VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTG  277 (700)
T ss_pred             HHHHHHHHhhhhccCCceEEEEECCCccc----cccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCC
Confidence            76655433222111111234444432211    0112335667888876541  111 1123446899999999999999


Q ss_pred             CcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEecCCHHHHHH-------
Q 005867          234 DPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD-------  306 (673)
Q Consensus       234 ~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~~~~~~~~~~-------  306 (673)
                      .||||++||+++++.+......+......+..++++++++|++|.+++.....++..|+++++.  ++..+.+       
T Consensus       278 ~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~--~~~~l~~~~~~~~~  355 (700)
T PTZ00216        278 DPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFG--SPRTLTDTFARPHG  355 (700)
T ss_pred             cCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEEC--CHHHhhhhhccccc
Confidence            9999999999999988776543311111246789999999999999987666667788877653  4555555       


Q ss_pred             HhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCcee
Q 005867          307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLR  386 (673)
Q Consensus       307 ~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr  386 (673)
                      .+++++||++.++|.+++.+.+...........+.+.++.+++..++..+..|.    ..+.++.+.+...+..+++++|
T Consensus       356 ~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~g~~lr  431 (700)
T PTZ00216        356 DLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGK----DTPYWNEKVFSAPRAVLGGRVR  431 (700)
T ss_pred             hHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCC----CCchHHHHHHHHHHHHhCCcEE
Confidence            678899999999999999999888777777778888899999888877766553    3456788888899999999999


Q ss_pred             EEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCc
Q 005867          387 LVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCG  466 (673)
Q Consensus       387 ~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~G  466 (673)
                      .+++||+++++++.++++..++ +++++||+||+++..+....... ..+++|+|+++++++|+| +++.......++.|
T Consensus       432 ~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~-~~~svG~p~~g~evkI~d-~~~~~~~~~~~~~G  508 (700)
T PTZ00216        432 AMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRTGDL-EPNAVGQLLKGVEMKLLD-TEEYKHTDTPEPRG  508 (700)
T ss_pred             EEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccccccCCCCC-CCCCcCCcCCCeEEEEee-chhhccCCCCCCCc
Confidence            9999999999999998888778 99999999999877665444332 348999999999999999 44332233344679


Q ss_pred             eEEEecCCccccccCCchhhhhhc-cCCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcce-
Q 005867          467 EVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED-  544 (673)
Q Consensus       467 El~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~-  544 (673)
                      ||+|+||+++.||+++|+.|.+.| .+|||+|||+|++|+||+|+++||.||+||.++|++|+|.+||++|.+||.|.+ 
T Consensus       509 EL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~  588 (700)
T PTZ00216        509 EILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPN  588 (700)
T ss_pred             eEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccc
Confidence            999999999999999999999999 689999999999999999999999999998558999999999999999999997 


Q ss_pred             -EEEEecCCCCeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccce
Q 005867          545 -IWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFE  623 (673)
Q Consensus       545 -~~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~  623 (673)
                       ++|+..++...++|+|+++.+....|...++...++.+++...++++.+.+.+.+..+.++             |..|+
T Consensus       589 ~~~v~~~~~~~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------------l~~~e  655 (700)
T PTZ00216        589 GVCVLVHPARSYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAG-------------RKSFE  655 (700)
T ss_pred             eEEEEEecCCceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcC-------------CCCce
Confidence             4566666678999999999999999988887767889999999999999999999988777             99999


Q ss_pred             eeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhh
Q 005867          624 HIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK  667 (673)
Q Consensus       624 ~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~~~ly~~  667 (673)
                      +|+.|+++++||+++...+|+++|++|+++++.|++.|+++|..
T Consensus       656 ~i~~~~~~~~~f~~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~~  699 (700)
T PTZ00216        656 IVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYADLIKELFAD  699 (700)
T ss_pred             eEeEEEEECCCCCCCCCCCChhhccchHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999974

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=3.5e-75  Score=627.30  Aligned_cols=584  Identities=36%  Similarity=0.572  Sum_probs=493.4

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (673)
Q Consensus        40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l  119 (673)
                      ...++..++.++++.+|+.+|+...     ..+.++.+||+|+..++.++|.+|+..|+..||+|+|++.|+++|+++.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~   88 (613)
T COG1022          14 EIHTLPKRLAERVKDRPDGVALMYK-----ELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADL   88 (613)
T ss_pred             hcccHHHHHHHHhhcCCcceeEeee-----cCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            4588999999999999998888865     36778999999999999999999999999779999999999999999999


Q ss_pred             HHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCC----CcHHHHHHHhh-CC
Q 005867          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS----LTAEQKEMAVQ-TG  194 (673)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~~~-~~  194 (673)
                      ||+.+|++.||+.+..+++++.++|++++++++|++...............+.........+    ........... ..
T Consensus        89 a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (613)
T COG1022          89 AILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPD  168 (613)
T ss_pred             HHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhcccccccc
Confidence            99999999999999999999999999999999999996555443333322111111110000    00000000000 00


Q ss_pred             CceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCC-CCCCcEEEEec
Q 005867          195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK-MTVDDVYLSFL  273 (673)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~-~~~~d~~l~~~  273 (673)
                      .....+ . .+.. .......+..++|+|.|+|||||||.||||++||+|+++++..+...+     . .+++|++++++
T Consensus       169 ~~~~~~-~-~~~~-~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~-----~~~~~~d~~LsfL  240 (613)
T COG1022         169 EGISLF-L-IDSA-GLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVL-----PPIGPGDRVLSFL  240 (613)
T ss_pred             ccchhh-h-hccc-ccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhC-----CCCCCCcEEEEeC
Confidence            011111 1 1111 111222567899999999999999999999999999999999988877     4 88999999999


Q ss_pred             chHhHHHHHHhHHHhhcCcEEEEecCCHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 005867          274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (673)
Q Consensus       274 p~~~~~gl~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (673)
                      |+.|++...+.......++..+++..++..+...++.++||.++++|.+|+.+.+.+.+.........+.+|.++++.+.
T Consensus       241 PlaHi~Er~~~~~~~~~~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~  320 (613)
T COG1022         241 PLAHIFERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAY  320 (613)
T ss_pred             cHHHHHHHHHHHHHHhhcceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            99999999875444444444455555999999999999999999999999999999999999999888889999987764


Q ss_pred             HHhh-----hcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccC
Q 005867          354 AWMN-----MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF  428 (673)
Q Consensus       354 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~  428 (673)
                      ....     .+...+  ....+.+.|+++++.+++++|.+++||+++++++..+++.. |+++.++||+||++...+.++
T Consensus       321 ~~~~~~~~~~~~~~~--~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi~i~eGYGlTEts~~~~v~~  397 (613)
T COG1022         321 KKISRALLGGGPLSW--LLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GIPILEGYGLTETSAVVSVNP  397 (613)
T ss_pred             HHHHhhhcccCCcch--hhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CCCeEEEecccccccceEEcc
Confidence            3222     121122  22388999999999999999999999999999999999985 899999999999999999988


Q ss_pred             CCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCceEEECCCC
Q 005867          429 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNG  507 (673)
Q Consensus       429 ~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G  507 (673)
                      ++.... +++|.|+|+++++|+|             .|||+||||.++.|||++|+.|.++| .||||+|||+|.+|++|
T Consensus       398 ~~~~~~-gtvG~p~p~~evKI~d-------------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g  463 (613)
T COG1022         398 PDRFVL-GTVGKPLPGIEVKIAD-------------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDG  463 (613)
T ss_pred             ccCccc-CCcCCcCCCceEEEcc-------------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCC
Confidence            777666 9999999999999999             59999999999999999999999999 59999999999999999


Q ss_pred             cEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCCCeEEEEEecChhHHHHHHHHcCC--CCcHHHHhc
Q 005867          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGH--AGSFLELCS  585 (673)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~--~~~~~~~~~  585 (673)
                      +|+++||++|+|++++|++|.|..||..+.++|.|.+++|+| ++...++|+|+++.+...+|+...+.  ..+..+++.
T Consensus       464 ~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~k~~~~AlIvp~~~~l~~~a~~~~~~~~~~~~~l~~  542 (613)
T COG1022         464 YLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DDKKFLVALIVPDFDALEKWAESLNKVISASREELAR  542 (613)
T ss_pred             cEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe-cCCcceEEEEeCCHHHHHHHHHhccccccCCHHHHhh
Confidence            999999999999999999999999999999999999999999 66889999999999999999988775  478999999


Q ss_pred             cHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHH
Q 005867          586 LVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY  665 (673)
Q Consensus       586 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~~~ly  665 (673)
                      ..++.+.+...+.....+               +..++.+.++.++..+|+.+....|++-|++|+.+.+.|++.++.+|
T Consensus       543 ~~~l~~~~~~~i~~~~~~---------------~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~~~~i~~~y  607 (613)
T COG1022         543 DPKLLKLILPRVNKGNKR---------------LFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDEIEAVY  607 (613)
T ss_pred             CHHHHHHHHHHHHHHhhc---------------ccchhhhheeeecccccccccCccccchhhhHHHHHHhhhhHHHHHh
Confidence            999999999999988886               78999999999999999999999999999999999999999999999


Q ss_pred             hhhc
Q 005867          666 EKLA  669 (673)
Q Consensus       666 ~~~~  669 (673)
                      .+.+
T Consensus       608 ~~~~  611 (613)
T COG1022         608 SRQS  611 (613)
T ss_pred             hccc
Confidence            8753

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=2e-72  Score=601.80  Aligned_cols=504  Identities=27%  Similarity=0.360  Sum_probs=408.9

Q ss_pred             HHHHHHHHHHhCCCC-CceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcC--CCCCCEEEEEcCCcHhHHHHHHH
Q 005867           44 AWDIFSMSVQKYPGN-RMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG--AEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        44 l~~~l~~~a~~~pd~-~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~g--v~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      +..+.+ .+..++++ +.+++.   +..   -+.+||+|+..++.++|.+|.+.|  +++||+|++++||+++++++++|
T Consensus        19 ~~~l~~-~~~~~~~~~~~~i~~---~~~---g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la   91 (537)
T KOG1176|consen   19 ITFLGR-PAFVYLDRNTSLVYQ---DSD---GRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALA   91 (537)
T ss_pred             cccccc-cccccccCcceEEEe---cCC---CcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            334443 33334444 777765   321   158999999999999999999875  89999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceec-
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS-  199 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-  199 (673)
                      |+..|+++.+++|.+.+.++.++++.++++++|++.+....+.+......   ..++.+......   ..........+ 
T Consensus        92 ~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~---~~i~~l~~~~~~---~~~~~~~~~~~~  165 (537)
T KOG1176|consen   92 VPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA---LKIIVLTGDEGV---ISISDLVEDLDA  165 (537)
T ss_pred             HHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC---CceEEEecccCc---cccccccccccc
Confidence            99999999999999999999999999999999999998887755443222   233333322000   00000111112 


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHH
Q 005867          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (673)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~  279 (673)
                      +..+........  ..+...+|+++++|||||||.||||.+||++++.+........     .+...++.++.+|++|.+
T Consensus       166 ~~~~~~~~~~~~--~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~-----~~~~~~v~l~~lPl~H~~  238 (537)
T KOG1176|consen  166 FEDLMPEGLPDG--IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGW-----ELTSDDVYLCTLPLFHIY  238 (537)
T ss_pred             hhhccccCCCcc--cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcc-----cCCCCceEEEechHHHHh
Confidence            444433332222  5566789999999999999999999999999999977655444     567799999999999999


Q ss_pred             HHHHhHHHhhc-CcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhh
Q 005867          280 DRVIEEYFFRR-GASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (673)
Q Consensus       280 gl~~~~~~l~~-G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (673)
                      |+...+.++.. |+++++... ++..+++.+++|++|++.++|.++..|++..                           
T Consensus       239 Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p---------------------------  291 (537)
T KOG1176|consen  239 GLITLLLSLLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSP---------------------------  291 (537)
T ss_pred             HHHHHHHHHHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCC---------------------------
Confidence            99988875544 555555555 9999999999999999999999999987531                           


Q ss_pred             hcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcC-CceeeecCCCCCCCcccccCCCCccccC
Q 005867          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMCMVG  436 (673)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g-~~v~~~YG~tE~~~~~~~~~~~~~~~~~  436 (673)
                                ....+++        ++++.+.+||+++++++.+.+.+.++ ..+.++||+||+++.++.+.......++
T Consensus       292 ----------~~~~~~l--------~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~  353 (537)
T KOG1176|consen  292 ----------IVKKYDL--------SSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPG  353 (537)
T ss_pred             ----------ccCcccC--------CccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCccc
Confidence                      1222222        59999999999999999999999998 8899999999999888877765545669


Q ss_pred             CcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccC-CccccCceEEECCCCcEEEeecC
Q 005867          437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDRK  515 (673)
Q Consensus       437 ~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~-g~~~TGDlg~~~~~G~l~~~GR~  515 (673)
                      ++|.++++..+++.+ +.+.  .++.++.||||++|+.++.||++||+.|++.|.+ |||+|||+|++|+||+|+|.+|.
T Consensus       354 svG~~~~g~~~~v~~-e~g~--~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~  430 (537)
T KOG1176|consen  354 SVGRLLPGVRVKVLD-ETGV--SLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRS  430 (537)
T ss_pred             ccCccccceEEEeeC-CCCC--CCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecch
Confidence            999999988888877 4444  4555678999999999999999999999999965 99999999999999999999999


Q ss_pred             CCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHH
Q 005867          516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY  592 (673)
Q Consensus       516 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  592 (673)
                      +|+||. +|++|+|.|||++|..||.|.||+|||.+|+   +.++|+|+.+++..                ..++++.++
T Consensus       431 KdlIk~-~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~----------------lte~di~~~  493 (537)
T KOG1176|consen  431 KDLIKY-GGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGST----------------LTEKDIIEY  493 (537)
T ss_pred             hhheee-CCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCc----------------CCHHHHHHH
Confidence            999997 8999999999999999999999999999876   48999999997432                256677777


Q ss_pred             HHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 005867          593 ILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  660 (673)
Q Consensus       593 ~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~  660 (673)
                      ++++                      ||+|++|.+++|+++.      |+|++||++|+.|+++|.+.
T Consensus       494 v~k~----------------------l~~y~~~~~V~Fvd~l------PKs~~GKi~R~~lr~~~~~~  533 (537)
T KOG1176|consen  494 VRKK----------------------LPAYKLPGGVVFVDEL------PKTPNGKILRRKLRDIAKKL  533 (537)
T ss_pred             HHhh----------------------CChhhccCeEEEeccC------CCCCcchHHHHHHHHHHHhc
Confidence            7765                      9999999999999433      69999999999999999764

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=2.2e-71  Score=551.12  Aligned_cols=518  Identities=23%  Similarity=0.288  Sum_probs=435.0

Q ss_pred             CCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc
Q 005867           32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC  111 (673)
Q Consensus        32 ~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~  111 (673)
                      +|-...|-.+.|+.++++-.+++-||+.|+++.   ...    .++||+||...++++|++|...|+++||+|++..||+
T Consensus        40 ~g~~~ipl~~~Tigq~l~~~t~~v~dkea~Vf~---~eg----~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~  112 (596)
T KOG1177|consen   40 HGCSQIPLDSETIGQLLETTTERVPDKEAAVFD---HEG----IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNS  112 (596)
T ss_pred             CCCCCCCcccccHHHHHHHHhhccCcceEEEEe---ecc----chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCCh
Confidence            344567888999999999999999999999986   222    4699999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhh-----hhhcc------------cccccccce
Q 005867          112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK-----ELLSP------------DCRSAQRLR  174 (673)
Q Consensus       112 ~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~------------~~~~~~~~~  174 (673)
                      .+|+.++|||+++|.+.+++||.+...+++..|++.+++++|+......     .+++.            ..+..+..+
T Consensus       113 ~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lt  192 (596)
T KOG1177|consen  113 YEWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELT  192 (596)
T ss_pred             HHHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccce
Confidence            9999999999999999999999999999999999999999999774322     11111            112335666


Q ss_pred             EEEEeCCCcHHHHHHHhhCCCceecHHHHHhcCccCCcc-----CCCCCCCceEEEEeccCCCCCcceeeechHHHHHHH
Q 005867          175 VMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEME-----ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV  249 (673)
Q Consensus       175 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~  249 (673)
                      +++..++..         ...+.+.+++++.....+...     .....|++++.|.|||||||.|||+.+||.+++++.
T Consensus       193 hvi~~~ed~---------~~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna  263 (596)
T KOG1177|consen  193 HVILADEDH---------PLPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNA  263 (596)
T ss_pred             EEEecCCCC---------cCCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhH
Confidence            666666332         234567788887766443222     123478999999999999999999999999999999


Q ss_pred             hhhhhhhccccCCCCCCcEEEEecchHhHHHHH-HhHHHhhcCcEEEEecC--CHHHHHHHhhhccCeEEEcchHHHHHH
Q 005867          250 SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV-IEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKI  326 (673)
Q Consensus       250 ~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~-~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l  326 (673)
                      ......+     ++...+++.+..|++|.+|.. ..+.++..|++++++..  ++...+.+|.++++|.++++|+++..|
T Consensus       264 ~~vg~r~-----g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dl  338 (596)
T KOG1177|consen  264 RAVGARA-----GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDL  338 (596)
T ss_pred             HHHHHHh-----CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHH
Confidence            9988888     788888999999999999965 57778999999999776  999999999999999999999999988


Q ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHh
Q 005867          327 HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT  406 (673)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~  406 (673)
                      ++.                                     +....+++        +++|.++.||+++++++++.+...
T Consensus       339 ln~-------------------------------------~~~~~~~~--------s~lr~~vigGa~~s~eLlk~iv~~  373 (596)
T KOG1177|consen  339 LNI-------------------------------------PQKQQVDL--------SSLRKGVIGGAPVSPELLKLIVNQ  373 (596)
T ss_pred             hcc-------------------------------------hhhccCch--------hhhhhheeCCCCCCHHHHHHHHHh
Confidence            753                                     22333333        399999999999999999999887


Q ss_pred             cCC-ceeeecCCCCCCCcccccCCCC--ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCc
Q 005867          407 CCA-FLVQGYGLTETCGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNP  483 (673)
Q Consensus       407 ~g~-~v~~~YG~tE~~~~~~~~~~~~--~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~  483 (673)
                      +++ .+...||+||++.+.+....++  .....++|..+++.+..+++ .++...+.+  ..||||+||+..+.|||+++
T Consensus       374 ~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~--~~Gel~iRGY~tMl~Ywg~~  450 (596)
T KOG1177|consen  374 MNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLG--TKGELLIRGYSTMLGYWGEE  450 (596)
T ss_pred             hCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccC--CCceEEEEechhheeecCCc
Confidence            764 4778999999998777665544  34447999999999999999 666655554  67999999999999999999


Q ss_pred             hhhhhhc-cCCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCCC---eEEEE
Q 005867          484 DLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS---MLVAV  559 (673)
Q Consensus       484 ~~~~~~~-~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~---~~~a~  559 (673)
                      +.|.+.. .|.||+|||.|.+|++|.++++||.+|+|+ ++|++|+|.+||+.|.+||.|.++.|+|++|+.   .++|+
T Consensus       451 ~kT~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~-rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~  529 (596)
T KOG1177|consen  451 EKTKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMII-RGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCAC  529 (596)
T ss_pred             ccchhhcccccceecCceEEEcCCCcEEEEEcccCeEE-eCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEE
Confidence            9999888 889999999999999999999999999998 699999999999999999999999999998763   79999


Q ss_pred             EecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCC
Q 005867          560 VVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMER  639 (673)
Q Consensus       560 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~  639 (673)
                      |.+..+...                      +...+.|+.+++ .+             |.+|++|++|++++.      
T Consensus       530 vRLqe~~e~----------------------~~t~E~lKa~Ck-~k-------------laHFKiPky~vf~~~------  567 (596)
T KOG1177|consen  530 VRLQEGAEG----------------------KTTAETLKAMCK-GK-------------LAHFKIPKYFVFVDE------  567 (596)
T ss_pred             EEeeccccc----------------------cccHHHHHHHHh-cc-------------cccccCCcEEEEecc------
Confidence            999986421                      123455555555 34             999999999999954      


Q ss_pred             CccccccccchHHHHHHHHHHH
Q 005867          640 DLVTATLKKKRNKLLIYYQVEI  661 (673)
Q Consensus       640 ~p~t~~GKv~R~~l~~~~~~~~  661 (673)
                      +|+|-+|||+|-+++++++..+
T Consensus       568 FPlT~tGKIqKFeir~~~k~~l  589 (596)
T KOG1177|consen  568 FPLTTTGKIQKFEIREMSKGHL  589 (596)
T ss_pred             CcccccccchhHHHHHHHHhhc
Confidence            3699999999999999998654

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=3.9e-70  Score=580.72  Aligned_cols=500  Identities=21%  Similarity=0.227  Sum_probs=407.9

Q ss_pred             CCcHHHHHHHHHHh-CCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHhHHHHH
Q 005867           41 LNTAWDIFSMSVQK-YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAM  118 (673)
Q Consensus        41 ~~tl~~~l~~~a~~-~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~-~gv~~gd~V~i~~~~~~e~~~~~  118 (673)
                      .|--..+++++... .+|++|+++.   +..++. +++||+||++.+.++|+.|++ .|+ +||+|++++|+.+|.++++
T Consensus         8 lN~~~n~~dr~~~~~~~~~~aii~~---~e~~~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~   82 (528)
T COG0365           8 LNLALNALDRHLEADRPDDTAIIFD---GEDGLF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIAL   82 (528)
T ss_pred             eechhhhhhhhhhccCCCceEEEEE---cCCCCc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHH
Confidence            34445567777763 5789999997   444344 899999999999999999987 578 9999999999999999999


Q ss_pred             HHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccc--cceEEEEeCCCcHHHHHHHhhCCCc
Q 005867          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ--RLRVMVCFTSLTAEQKEMAVQTGIK  196 (673)
Q Consensus       119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~  196 (673)
                      |||+++|++.+|+.+.++++.+...+++++++++|+++...............  ....++.....             .
T Consensus        83 LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~-------------~  149 (528)
T COG0365          83 LATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRL-------------G  149 (528)
T ss_pred             HHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEeccc-------------c
Confidence            99999999999999999999999999999999999998766543221111100  00002222211             1


Q ss_pred             eecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhh-hhccccCCCCCCcEEEEecch
Q 005867          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL-FLDQFEDKMTVDDVYLSFLPL  275 (673)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~-~~~~~~~~~~~~d~~l~~~p~  275 (673)
                       ..|.++...... .....+...+|+++++|||||||.||||+++|..++........ .+     .+.++|++++..++
T Consensus       150 -~~~~~~~~~~~~-~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~-----~~~~~Dv~w~~ad~  222 (528)
T COG0365         150 -LWYDEAVEKASE-KFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHG-----DLLPGDRFWNSSDP  222 (528)
T ss_pred             -ccHHHHhhccCC-CCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhh-----CCCCCCEEEeCCCc
Confidence             567777665532 23334489999999999999999999999999987777665544 33     67799999999999


Q ss_pred             HhHHHHHH-hHHHhhcCcEEEEecC----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 005867          276 AHILDRVI-EEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK  350 (673)
Q Consensus       276 ~~~~gl~~-~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (673)
                      .|++|... .+.+|.+|++++++..    +++.+++.|+++++|.+++.|+.++.|.+...                   
T Consensus       223 GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~-------------------  283 (528)
T COG0365         223 GWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL-------------------  283 (528)
T ss_pred             hhhhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC-------------------
Confidence            99999987 6778999999999876    38899999999999999999999999865311                   


Q ss_pred             HHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCC
Q 005867          351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD  430 (673)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~  430 (673)
                                        .+.+        .+++||.+.+.||+++++..+++.+.+|++|.+.||+||+++......+ 
T Consensus       284 ------------------~~~~--------dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~~-  336 (528)
T COG0365         284 ------------------GEPY--------DLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP-  336 (528)
T ss_pred             ------------------cccc--------cchhheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCCC-
Confidence                              1222        2359999999999999999999999999999999999999965555444 


Q ss_pred             CccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecC--CccccccCCchhhhhhccCCccccCceEEECCCCc
Q 005867          431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGV  508 (673)
Q Consensus       431 ~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp--~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~  508 (673)
                       ...+++.|.|+||+++.++| +++.  +++.++ |+|.++.|  +++.+||+|++.+.+.|.+.||.|||.+.+|+||+
T Consensus       337 -~~~~g~~g~p~pG~~~~vvd-d~g~--~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~~y~tGD~~~~DedGy  411 (528)
T COG0365         337 -PVKNGSSGLPLPGYAVRRVD-DEGN--PVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERDEDGY  411 (528)
T ss_pred             -CcCCCCCCCCCCCceeEEEC-CCCC--cCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhceeecCceeEEccCCC
Confidence             33336669999999999999 6644  444456 99999987  89999999999999999777999999999999999


Q ss_pred             EEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhc
Q 005867          509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS  585 (673)
Q Consensus       509 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~  585 (673)
                      ++|+||.||+||+ .|++|.+.|||++|.+||.|.||+|+|.+++   +.+.|||+++++..                  
T Consensus       412 ~~i~GR~DDvI~v-sG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~------------------  472 (528)
T COG0365         412 FWLHGRSDDVIKV-SGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVE------------------  472 (528)
T ss_pred             EEEEeeccceEec-cCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCC------------------
Confidence            9999999999997 6999999999999999999999999998765   37999999998642                  


Q ss_pred             cHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 005867          586 LVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  659 (673)
Q Consensus       586 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~  659 (673)
                      ..    .+.++|+++++++              +.++..|+.|.|++.      +|+|.|||+.|+.|++.+.+
T Consensus       473 ~~----~L~~ei~~~vr~~--------------~~~~~~p~~i~fv~~------LPkT~sGKI~R~~lr~~~~~  522 (528)
T COG0365         473 PN----ELAEEIRRHVARN--------------IGPHAIPRKIRFVDE------LPKTASGKIQRRLLRKILHK  522 (528)
T ss_pred             hH----HHHHHHHHHHHhc--------------cCcccCCceEEEecC------CCCCCcccHHHHHHHHHHhh
Confidence            11    4556666666543              445999999999933      36999999999999998874

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=4.6e-69  Score=596.56  Aligned_cols=507  Identities=28%  Similarity=0.401  Sum_probs=415.8

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHH
Q 005867           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (673)
Q Consensus        39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~  118 (673)
                      ..+.++.++|.++++++|+++|+++.   +...    ++||+||.+++.++|+.|++.|+++||+|+|+++|++++++++
T Consensus         8 ~~~~~~~~~l~~~a~~~~~~~a~~~~---~~~~----~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~   80 (534)
T COG0318           8 TAELTLASLLERAARRNPDRPALIFL---GRGG----RLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAF   80 (534)
T ss_pred             cccccHHHHHHHHHHhCCCceEEEEc---CCCc----eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence            45689999999999999999999986   4321    5999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCce-
Q 005867          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP-  197 (673)
Q Consensus       119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-  197 (673)
                      |||+++|++++|+++.+...++.++++.+++++++++............ .......+........           .. 
T Consensus        81 ~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~  148 (534)
T COG0318          81 LAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAE-ALPVVLVVLLVGDADD-----------RLP  148 (534)
T ss_pred             HHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhc-cCCcceEEEecccccc-----------ccc
Confidence            9999999999999999999999999999999999999873332222111 1122222222221110           00 


Q ss_pred             ecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCC--CCCCcEEEEecch
Q 005867          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK--MTVDDVYLSFLPL  275 (673)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~--~~~~d~~l~~~p~  275 (673)
                      .++.++...............++++++++|||||||.||+|++||+++..+.......+     .  ++..|++++++|+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~~~d~~l~~lPl  223 (534)
T COG0318         149 ITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL-----GGGLTPDDVVLSWLPL  223 (534)
T ss_pred             ccHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHh-----cccCCCCceEEEecCh
Confidence            24555533322222222236799999999999999999999999999999988887777     5  8899999999999


Q ss_pred             HhHHHHHHhHHH-hhcCcEEEEecC---CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 005867          276 AHILDRVIEEYF-FRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  351 (673)
Q Consensus       276 ~~~~gl~~~~~~-l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (673)
                      +|.+|+...+.+ ++.|+++++.+.   ++..++..+.++++|++.++|+++..++.+......                
T Consensus       224 ~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~----------------  287 (534)
T COG0318         224 FHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDD----------------  287 (534)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCcc----------------
Confidence            999999976665 899999999882   899999999999999999999999997764221110                


Q ss_pred             HHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcC-CceeeecCCCCCCCcccccCCC
Q 005867          352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPD  430 (673)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g-~~v~~~YG~tE~~~~~~~~~~~  430 (673)
                                           .+.       +++|.+++||+++++++.+.+.+.|+ ..+++.||+||+++.++.....
T Consensus       288 ---------------------~~~-------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~  339 (534)
T COG0318         288 ---------------------DLS-------SSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPD  339 (534)
T ss_pred             ---------------------ccc-------cceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCc
Confidence                                 000       13999999999999999999999997 5799999999999877777665


Q ss_pred             C-ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccC-CccccCceEEECCCCc
Q 005867          431 E-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGV  508 (673)
Q Consensus       431 ~-~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~-g~~~TGDlg~~~~~G~  508 (673)
                      . ....+++|.|+++++++|+| ++++ .+.+ |+.|||+|+||+++.|||++|+.|...|.+ |||+|||+|++|++|+
T Consensus       340 ~~~~~~~~~G~~~pg~~v~Ivd-~~~~-~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~  416 (534)
T COG0318         340 DLLAKPGSVGRPLPGVEVRIVD-PDGG-EVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGY  416 (534)
T ss_pred             hhhhcCCcccccCCCcEEEEEe-CCCC-ccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCcc
Confidence            5 23457789999999999999 5554 3333 679999999999999999999999998875 9999999999999999


Q ss_pred             EEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhc
Q 005867          509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS  585 (673)
Q Consensus       509 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~  585 (673)
                      ++|.||.+|+|+. +|++|+|.+||+++.+||.|.+|+|++.+++   +.++|+|+++++..              +-.+
T Consensus       417 l~i~gR~kd~I~~-gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~--------------~~~~  481 (534)
T COG0318         417 LYIVGRLKDLIIS-GGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGD--------------AELT  481 (534)
T ss_pred             EEEEeccceEEEe-CCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCC--------------CCCC
Confidence            9999999999995 8999999999999999999999999998875   58999999987521              0003


Q ss_pred             cHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 005867          586 LVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  659 (673)
Q Consensus       586 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~  659 (673)
                      ++++.+++++.                      |+.|.+|+.++++      +++|+|++||++|+.|++.+.+
T Consensus       482 ~~~i~~~~~~~----------------------l~~~~~P~~v~~v------~~lP~t~sGKi~r~~lr~~~~~  527 (534)
T COG0318         482 AEELRAFLRKR----------------------LALYKVPRIVVFV------DELPRTASGKIDRRALREEYRA  527 (534)
T ss_pred             HHHHHHHHHhh----------------------hhcccCCeEEEEe------CCCCCCCchhhhHHHHHHHHHh
Confidence            44555555543                      9999999999998      3346999999999999999987

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=1.7e-66  Score=588.08  Aligned_cols=541  Identities=20%  Similarity=0.259  Sum_probs=428.1

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      ..++.++|+++++++|+++|+++.   + ..+.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus        38 ~~~l~~~l~~~a~~~p~~~a~~~~---~-~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA  113 (614)
T PRK08180         38 PRRLTDRLVHWAQEAPDRVFLAER---G-ADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALA  113 (614)
T ss_pred             CccHHHHHHHHHHHCCCCceeeec---c-CCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHH
Confidence            578999999999999999999864   2 233457899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCC-----hhhHHHHHhccCceEEEEcchh-hhhhhcccccccccceEEEEeCCCcHHHHHHHhhCC
Q 005867          121 CNALSLICVPLYDTLG-----PGAVNFILDHAEIDFVFVQDKK-VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG  194 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~-----~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  194 (673)
                      |+++|++++|+++.++     .+++.++++.++++++|+++.. ..........  ... .++.......         .
T Consensus       114 ~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~--~~~-~~i~~~~~~~---------~  181 (614)
T PRK08180        114 AMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP--ADV-EVVAVRGAVP---------G  181 (614)
T ss_pred             HHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc--CCc-eEEEecCCCC---------C
Confidence            9999999999999988     7899999999999999998642 1211111111  111 2222221100         0


Q ss_pred             CceecHHHHHhcCccCC--ccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCC--CCcEEE
Q 005867          195 IKPYSWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT--VDDVYL  270 (673)
Q Consensus       195 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~--~~d~~l  270 (673)
                      ....+|.++........  .......++++++|+|||||||.||||++||+++...+......+     +..  .+++++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~~l  256 (614)
T PRK08180        182 RAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTF-----PFLAEEPPVLV  256 (614)
T ss_pred             cccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhc-----cccCCCCcEEE
Confidence            01245666554321111  111234679999999999999999999999999998887765554     332  568999


Q ss_pred             EecchHhHHHHHH-hHHHhhcCcEEEEecC-----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHH
Q 005867          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI  344 (673)
Q Consensus       271 ~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~  344 (673)
                      +++|++|.+|+.. .+.+++.|+++++.+.     .+..+++.++++++|+++++|+++..|++......          
T Consensus       257 ~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~----------  326 (614)
T PRK08180        257 DWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDA----------  326 (614)
T ss_pred             EecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhch----------
Confidence            9999999999764 5567999999988753     34578889999999999999999999876432110          


Q ss_pred             HHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHh----cC--CceeeecCCC
Q 005867          345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC--AFLVQGYGLT  418 (673)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~----~g--~~v~~~YG~t  418 (673)
                                                     ...+..+++||.+++||+++++++.+.+.+.    +|  +++++.||+|
T Consensus       327 -------------------------------~~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~T  375 (614)
T PRK08180        327 -------------------------------ALRRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMT  375 (614)
T ss_pred             -------------------------------hhhhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeeccc
Confidence                                           0111223599999999999999999998874    33  6899999999


Q ss_pred             CCCCcccccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCcccc
Q 005867          419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHT  497 (673)
Q Consensus       419 E~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~T  497 (673)
                      |++++++...... ...+++|+|++|+++++++ +         +..|||+++||.++.||+++++.+...| .+|||+|
T Consensus       376 E~~~~~~~~~~~~-~~~~svG~p~pg~~v~i~d-~---------~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~T  444 (614)
T PRK08180        376 ETAPSATFTTGPL-SRAGNIGLPAPGCEVKLVP-V---------GGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRS  444 (614)
T ss_pred             ccCCceEeccccc-CCCCcccCccCCcEEEEec-C---------CCCcEEEEecCccchhhcCChhHhHhhcccCCceec
Confidence            9987766543332 3448999999999999988 2         2369999999999999999999999998 5899999


Q ss_pred             CceEEE----CCCCcEEEeecCCCeEEcCCceeec--hHHHHHHHhcCcCcceEEEEecCCCCeEEEEEecChhHHHHHH
Q 005867          498 GDIGQI----LPNGVVKIIDRKKNLIKISQGEYVA--LEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWA  571 (673)
Q Consensus       498 GDlg~~----~~~G~l~~~GR~~d~i~~~~G~~v~--~~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~v~~~~~~~~~~~  571 (673)
                      ||+|++    |++|+|+++||.+|+|++++|++++  |.++|.++.+||.|.+|+|+|.++ +.+.|+|+++++....|.
T Consensus       445 GDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~-~~~~a~V~~~~~~~~~~~  523 (614)
T PRK08180        445 GDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDR-DEIGLLVFPNLDACRRLA  523 (614)
T ss_pred             cceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCC-CceEEEEEcCHHHHHHHH
Confidence            999999    4689999999999999877899777  778889999999999999999874 568899999988665555


Q ss_pred             HHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchH
Q 005867          572 YSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRN  651 (673)
Q Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~  651 (673)
                      ... ...+..+.++.+++++++++.|.++... .             .+.+.+|+++.+++.++.......|++||++|+
T Consensus       524 ~~~-~~~~~~~~~~~~~l~~~~~~~l~~~~~~-~-------------~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~  588 (614)
T PRK08180        524 GLL-ADASLAEVLAHPAVRAAFRERLARLNAQ-A-------------TGSSTRVARALLLDEPPSLDAGEITDKGYINQR  588 (614)
T ss_pred             hhc-ccCCHHHHhcCHHHHHHHHHHHHHHHhh-c-------------cccHhheeEEEEecCCCCCccCccCccccccHH
Confidence            443 2234445567788999999998888764 2             345669999999987777788999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcC
Q 005867          652 KLLIYYQVEIDQLYEKLAP  670 (673)
Q Consensus       652 ~l~~~~~~~~~~ly~~~~~  670 (673)
                      ++.+.|+++|+++|.....
T Consensus       589 ~~~~~y~~~i~~lY~~~~~  607 (614)
T PRK08180        589 AVLARRAALVEALYADEPD  607 (614)
T ss_pred             HHHHHhHHHHHHHhCCCCC
Confidence            9999999999999996644

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.8e-66  Score=587.31  Aligned_cols=564  Identities=21%  Similarity=0.253  Sum_probs=439.6

Q ss_pred             CCCCCCCCCCceeccccC----CCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHH
Q 005867           14 GKDGKPSVGPVYRNLLAS----NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQI   89 (673)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~l   89 (673)
                      +-..+|.....+|....+    .++|..+ ...++.++|+.+++++||++|+++.   +...+.++++||+||.++++++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~a~~~pd~~a~~~~---~~~~~~~~~~Ty~el~~~v~~l   93 (624)
T PRK12582         18 PLNWKPPDISVERRADGSIVIKSRHPLGP-YPRSIPHLLAKWAAEAPDRPWLAQR---EPGHGQWRKVTYGEAKRAVDAL   93 (624)
T ss_pred             ccccCCCceEEEEcCCceEEEecCCCCCC-cccCHHHHHHHHHHHCCCchheecc---cCCCCceEEeEHHHHHHHHHHH
Confidence            344566666677775433    4444433 3578999999999999999999875   3323456799999999999999


Q ss_pred             HHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCCh-----hhHHHHHhccCceEEEEcchh-hhhhh
Q 005867           90 VSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP-----GAVNFILDHAEIDFVFVQDKK-VKELL  163 (673)
Q Consensus        90 A~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~-----~~l~~~l~~~~~~~vi~~~~~-~~~~~  163 (673)
                      |++|.+.|+++||+|+++++|++++++++|||+++|++++|+++.++.     +++.++++.++++++|+++.. .....
T Consensus        94 A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~  173 (624)
T PRK12582         94 AQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARAL  173 (624)
T ss_pred             HHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999875     899999999999999998642 11111


Q ss_pred             cccccccccceEEEEeCCCcHHHHHHHhhCCCceecHHHHHhcCccCC--ccCCCCCCCceEEEEeccCCCCCcceeeec
Q 005867          164 SPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLT  241 (673)
Q Consensus       164 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~pK~v~~t  241 (673)
                      .....  .... ++..+....         ......+.++........  .......++++++|+|||||||.||||.++
T Consensus       174 ~~~~~--~~~~-~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~t  241 (624)
T PRK12582        174 AALDL--LDVT-VVHVTGPGE---------GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINT  241 (624)
T ss_pred             Hhhhh--cCce-EEEEcCCCc---------ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEee
Confidence            11111  1122 223322110         111234555544321110  111234678999999999999999999999


Q ss_pred             hHHHHHHHhhhhhhhccccCCCC---CCcEEEEecchHhHHHHHHh-HHHhhcCcEEEEecC-----CHHHHHHHhhhcc
Q 005867          242 HETIATFVSGVDLFLDQFEDKMT---VDDVYLSFLPLAHILDRVIE-EYFFRRGASVGYYHG-----DLNALRDDLMELK  312 (673)
Q Consensus       242 h~~l~~~~~~~~~~~~~~~~~~~---~~d~~l~~~p~~~~~gl~~~-~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~  312 (673)
                      |+++...+......+     ...   ..+++++++|++|.+|+... +.++..|+++++.+.     ....+++.+++++
T Consensus       242 h~~l~~~~~~~~~~~-----~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~  316 (624)
T PRK12582        242 QRMMCANIAMQEQLR-----PREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREIS  316 (624)
T ss_pred             HHHHHHHHHHHHHhc-----cccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcC
Confidence            999988876654333     222   35799999999999998654 457889999988653     2345677888999


Q ss_pred             CeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcC
Q 005867          313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG  392 (673)
Q Consensus       313 ~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G  392 (673)
                      +|+++++|+++..|.+......                                 ..        +...+++||.+++||
T Consensus       317 ~t~~~~vP~~~~~l~~~~~~~~---------------------------------~~--------~~~~~~slr~i~~gG  355 (624)
T PRK12582        317 PTVYGNVPAGYAMLAEAMEKDD---------------------------------AL--------RRSFFKNLRLMAYGG  355 (624)
T ss_pred             CeEEeccCHHHHHHHHHHhhCH---------------------------------HH--------HHHHhhheeEEEecC
Confidence            9999999999998865432110                                 00        111124899999999


Q ss_pred             CCCCHHHHHHHHHhc------CCceeeecCCCCCCCcccccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCc
Q 005867          393 APLSTEVEEFLRVTC------CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCG  466 (673)
Q Consensus       393 ~~l~~~~~~~~~~~~------g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~G  466 (673)
                      +++++++.++|.+.+      ++++++.||+||++.++....... ...+++|.|++|+++++++          .|+.|
T Consensus       356 a~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~-~~~~svG~p~pg~~v~i~~----------~G~~G  424 (624)
T PRK12582        356 ATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWDT-ERVGLIGLPLPGVELKLAP----------VGDKY  424 (624)
T ss_pred             CCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCCC-CCCCCCCcCCCCcEEEEcc----------CCCce
Confidence            999999999998863      368999999999987665322222 3347999999999999875          34689


Q ss_pred             eEEEecCCccccccCCchhhhhhc-cCCccccCceEEE-C---CCCcEEEeecCCCeEEcCCceeechHHHH--HHHhcC
Q 005867          467 EVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQI-L---PNGVVKIIDRKKNLIKISQGEYVALEYLE--NVYCVA  539 (673)
Q Consensus       467 El~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~-~---~~G~l~~~GR~~d~i~~~~G~~v~~~~iE--~~l~~~  539 (673)
                      ||+|+|+.++.||+++++.+.+.| .+|||+|||+|++ |   ++|+|+++||.+|+|++++|++|+|.+||  .++.+|
T Consensus       425 El~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~  504 (624)
T PRK12582        425 EVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACS  504 (624)
T ss_pred             EEEEECCcccccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcC
Confidence            999999999999999999999999 6899999999998 4   46999999999999998789999998885  678999


Q ss_pred             cCcceEEEEecCCCCeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccC
Q 005867          540 PIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLL  619 (673)
Q Consensus       540 p~V~~~~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L  619 (673)
                      |.|.+|+|+|.+ .+.+.++|++.......+....+  ....+.++.+++.+.+++.|.+++.+               +
T Consensus       505 p~V~~a~VvG~~-~~~~g~lv~p~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~l~~~~~~---------------~  566 (624)
T PRK12582        505 PVIHDAVVAGQD-RAFIGLLAWPNPAACRQLAGDPD--AAPEDVVKHPAVLAILREGLSAHNAE---------------A  566 (624)
T ss_pred             cchheEEEEcCC-CCcEEEEEecCHHHHHHHHhcCC--CCHHHHhcCHHHHHHHHHHHHHHHhh---------------c
Confidence            999999999986 66788888888876555543322  22445667788999999999999886               8


Q ss_pred             ccce-eeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhhh
Q 005867          620 RGFE-HIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL  668 (673)
Q Consensus       620 p~~~-~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~~~ly~~~  668 (673)
                      |.+. +|+++.+++++|..+..++|++||++|+.+.+.|+++||++|+..
T Consensus       567 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~~i~~ly~~~  616 (624)
T PRK12582        567 GGSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLERRAALVERLYAEP  616 (624)
T ss_pred             CCChhheEEEEEeCCCCCccCCcCCccccccHHHHHHHHHHHHHHHhcCC
Confidence            9999 999999998888888999999999999999999999999999854

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.9e-66  Score=588.84  Aligned_cols=531  Identities=18%  Similarity=0.219  Sum_probs=400.6

Q ss_pred             CCCCcHHHHHHHHHHh--CCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHH
Q 005867           39 SDLNTAWDIFSMSVQK--YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (673)
Q Consensus        39 ~~~~tl~~~l~~~a~~--~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~  116 (673)
                      ...|+..++|+++++.  +||++|+++.   ....+..+++||+||.+++.++|++|++.|+++||+|+++++|++++++
T Consensus        56 ~~~n~~~~~l~~~~~~~~~~~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~  132 (647)
T PTZ00237         56 GELNTCYNVLDIHVKNPLKRDQDALIYE---CPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLI  132 (647)
T ss_pred             CeeeHHHHHHHHhhcccCCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHH
Confidence            4568889999998865  7999999875   3323334789999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchh---------hhhhhcccccccccceEEEEeCCCc---H
Q 005867          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK---------VKELLSPDCRSAQRLRVMVCFTSLT---A  184 (673)
Q Consensus       117 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~---~  184 (673)
                      ++|||+++|++++|+++.++.+++.++|+.++++++|+++..         ...+.+...........++......   .
T Consensus       133 ~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~  212 (647)
T PTZ00237        133 AMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSE  212 (647)
T ss_pred             HHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccc
Confidence            999999999999999999999999999999999999997631         1111111110000122333321100   0


Q ss_pred             HHH-HH-HhhCCCceecHHHHHhcCc----cCCccCCCCCCCceEEEEeccCCCCCcceeeechHH-HHHHHhhhhhhhc
Q 005867          185 EQK-EM-AVQTGIKPYSWDEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFLD  257 (673)
Q Consensus       185 ~~~-~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~-l~~~~~~~~~~~~  257 (673)
                      ... .. ..........|++++....    ..........++++++|+|||||||.||||+++|.+ +..........+ 
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~-  291 (647)
T PTZ00237        213 SDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSII-  291 (647)
T ss_pred             cccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhc-
Confidence            000 00 0000012345666654321    111222345789999999999999999999999998 443333222223 


Q ss_pred             cccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEecCC-------HHHHHHHhhhccCeEEEcchHHHHHHHHHH
Q 005867          258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD-------LNALRDDLMELKPTLLAGVPRVFEKIHEGI  330 (673)
Q Consensus       258 ~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~~~~-------~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~  330 (673)
                          ....++++++..|+.|+.+...++.++..|+++++++.+       +..+++.++++++|+++++|++++.|.+..
T Consensus       292 ----~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~  367 (647)
T PTZ00237        292 ----EKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTD  367 (647)
T ss_pred             ----CCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhC
Confidence                566789999999999987666677889999999997752       678999999999999999999999886531


Q ss_pred             HHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCc
Q 005867          331 KKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF  410 (673)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~  410 (673)
                      ....                                .....+        .+++||.+++||+++++++.+++.+.+|++
T Consensus       368 ~~~~--------------------------------~~~~~~--------~l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~  407 (647)
T PTZ00237        368 PEAT--------------------------------IIRSKY--------DLSNLKEIWCGGEVIEESIPEYIENKLKIK  407 (647)
T ss_pred             cccc--------------------------------cccccc--------CcchheEEEecCccCCHHHHHHHHHhcCCC
Confidence            1000                                000001        124899999999999999999999999999


Q ss_pred             eeeecCCCCCCCcccccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecC---CccccccCCchhhh
Q 005867          411 LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTR  487 (673)
Q Consensus       411 v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp---~~~~gy~~~~~~~~  487 (673)
                      +++.||+||+++.+...........+++|.|+++++++|+| +++.  +++.|+.|||++++|   .++.|||++++.+.
T Consensus       408 i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d-~~g~--~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~  484 (647)
T PTZ00237        408 SSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILS-EDGK--ELNVNEIGEVAFKLPMPPSFATTFYKNDEKFK  484 (647)
T ss_pred             EEeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEEC-CCCC--CCCCCCceEEEEeccCCchhhCceeCCHHHHH
Confidence            99999999998765543332223337899999999999999 6554  345568999999986   78999999999998


Q ss_pred             hhcc--CCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEec
Q 005867          488 ESII--DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVP  562 (673)
Q Consensus       488 ~~~~--~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~  562 (673)
                      ..|.  +|||+|||+|++|++|+++++||.||+|++ +|++|+|.+||++|.+||.|.||+|++.+++   +.++|+|++
T Consensus       485 ~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~-~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~  563 (647)
T PTZ00237        485 QLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKI-SGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVL  563 (647)
T ss_pred             HHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEE-CCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEe
Confidence            7773  799999999999999999999999999997 7999999999999999999999999998764   578999998


Q ss_pred             ChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCcc
Q 005867          563 CEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLV  642 (673)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~  642 (673)
                      +++..       +...      +..    .+.++|+++++ ++             |++|++|+.|++++.      +|+
T Consensus       564 ~~~~~-------~~~~------~~~----~l~~~i~~~~~-~~-------------l~~~~~P~~i~~v~~------lP~  606 (647)
T PTZ00237        564 KQDQS-------NQSI------DLN----KLKNEINNIIT-QD-------------IESLAVLRKIIIVNQ------LPK  606 (647)
T ss_pred             ccCcc-------ccCC------CHH----HHHHHHHHHHH-hh-------------cCccccCcEEEEcCC------CCC
Confidence            75320       0000      111    23344444444 23             999999999999843      369


Q ss_pred             ccccccchHHHHHHHH
Q 005867          643 TATLKKKRNKLLIYYQ  658 (673)
Q Consensus       643 t~~GKv~R~~l~~~~~  658 (673)
                      |++||++|+.|++++.
T Consensus       607 T~sGKi~R~~Lr~~~~  622 (647)
T PTZ00237        607 TKTGKIPRQIISKFLN  622 (647)
T ss_pred             CCCccEeHHHHHHHHc
Confidence            9999999999999874

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=1e-65  Score=576.75  Aligned_cols=526  Identities=20%  Similarity=0.186  Sum_probs=403.5

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      .-+|.++|++.++++|+++|+++.   +      +.+||+||.+++.++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus         6 ~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la   76 (563)
T PLN02860          6 QAHICQCLTRLATLRGNAVVTISG---N------RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLA   76 (563)
T ss_pred             hhHHHHHHHHHHHhcCCceEEecC---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            478999999999999999999753   2      4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecH
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  200 (673)
                      |+++|++++|+++.++.+++.++++.++++++++++..............+....++..++.....    ..........
T Consensus        77 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~  152 (563)
T PLN02860         77 VACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSV----FIFLNSFLTT  152 (563)
T ss_pred             HhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCccccc----ccchhhcccc
Confidence            999999999999999999999999999999999987642221111111122233333333211000    0000011112


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHH
Q 005867          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (673)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (673)
                      +++...............++++++++|||||||.||+|.++|+++..........+     ++..+|+++..+|++|.+|
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~g  227 (563)
T PLN02860        153 EMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIV-----GYGEDDVYLHTAPLCHIGG  227 (563)
T ss_pred             chhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhc-----CCCCCCEEEEecCchhhcc
Confidence            22211110111111234678999999999999999999999999988776655555     7888999999999999999


Q ss_pred             HHHhHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhc
Q 005867          281 RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG  359 (673)
Q Consensus       281 l~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (673)
                      +...+.++..|+++++.+. ++..+++.++++++|++.++|+++..|.+......                         
T Consensus       228 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-------------------------  282 (563)
T PLN02860        228 LSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSM-------------------------  282 (563)
T ss_pred             HHHHHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhh-------------------------
Confidence            8878888999999998876 99999999999999999999999998865321110                         


Q ss_pred             CCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCCCC-------
Q 005867          360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-------  431 (673)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~~-------  431 (673)
                                        ....+++||.+++||+++++.+.+.|++.| +.++++.||+||+++.+.......       
T Consensus       283 ------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~  344 (563)
T PLN02860        283 ------------------TWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPK  344 (563)
T ss_pred             ------------------ccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccch
Confidence                              001124899999999999999999999988 789999999999986554322111       


Q ss_pred             ---------------ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCcc
Q 005867          432 ---------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWF  495 (673)
Q Consensus       432 ---------------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~  495 (673)
                                     .....++|+|++++++++++ ++       .++.|||+++|+.++.||+++++.+...| .+|||
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~-~~-------~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~  416 (563)
T PLN02860        345 QTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGL-DE-------SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWL  416 (563)
T ss_pred             hhhhhhcccccccccccCCcccCCccCCcEEEEec-CC-------CCceeEEEEecCcccccccCCccccchhccCCCeE
Confidence                           11113689999999999998 43       35689999999999999999999998888 68999


Q ss_pred             ccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHH
Q 005867          496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAY  572 (673)
Q Consensus       496 ~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~  572 (673)
                      +|||+|++|++|++++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+++++..  |..
T Consensus       417 ~TGDl~~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~--~~~  493 (563)
T PLN02860        417 DTGDIGWIDKAGNLWLIGRSNDRIKT-GGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWI--WSD  493 (563)
T ss_pred             EccceEEEcCCCCEEEeecccceeEE-CCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCccc--ccc
Confidence            99999999999999999999999997 8999999999999999999999999997654   47999999876421  000


Q ss_pred             HcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHH
Q 005867          573 SNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNK  652 (673)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~  652 (673)
                      ....  ..   ...   .....+.|.+++.+.+             |++|++|+.++++..     .+|+|++||++|++
T Consensus       494 ~~~~--~~---~~~---~~~~~~~l~~~~~~~~-------------L~~~~~P~~~~~~~~-----~lP~t~~GKi~r~~  547 (563)
T PLN02860        494 NEKE--NA---KKN---LTLSSETLRHHCREKN-------------LSRFKIPKLFVQWRK-----PFPLTTTGKIRRDE  547 (563)
T ss_pred             ccch--hh---ccc---ccccHHHHHHHHhhCc-------------ccccccceEEEEEec-----CCCCCcccchhHHH
Confidence            0000  00   000   0011234444554335             999999999987632     23699999999999


Q ss_pred             HHHHHHHHHHHH
Q 005867          653 LLIYYQVEIDQL  664 (673)
Q Consensus       653 l~~~~~~~~~~l  664 (673)
                      |++++.+.++.+
T Consensus       548 L~~~~~~~~~~~  559 (563)
T PLN02860        548 VRREVLSHLQSL  559 (563)
T ss_pred             HHHHHHHHHhcc
Confidence            999998877764

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=1.4e-65  Score=583.63  Aligned_cols=523  Identities=17%  Similarity=0.172  Sum_probs=402.1

Q ss_pred             CCCcHHHHHHHHHH-hCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHH
Q 005867           40 DLNTAWDIFSMSVQ-KYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (673)
Q Consensus        40 ~~~tl~~~l~~~a~-~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~  118 (673)
                      ..|...++|++++. .+|+++|+++.   ....+..+++||+||.+++.++|++|++.|+++||+|+++++|++++++++
T Consensus        86 ~~N~~~~~l~~~~~~~~~~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~  162 (666)
T PLN02654         86 KTNICYNCLDRNVEAGNGDKIAIYWE---GNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAM  162 (666)
T ss_pred             EeeHHHHHHHHhhccCCCCCEEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            35677889988876 49999999875   333344578999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhh---------cccccc---cccceEEEEeCCCcHHH
Q 005867          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELL---------SPDCRS---AQRLRVMVCFTSLTAEQ  186 (673)
Q Consensus       119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~---------~~~~~~---~~~~~~v~~~~~~~~~~  186 (673)
                      |||+++|++++|+++.++.+++..+++.++++++|+++.......         ......   ......++.........
T Consensus       163 lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (666)
T PLN02654        163 LACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMK  242 (666)
T ss_pred             HHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccccccc
Confidence            999999999999999999999999999999999999876432110         000000   00111122222110000


Q ss_pred             HHHHhhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHH-hhhhhhhccccCCCCC
Q 005867          187 KEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV-SGVDLFLDQFEDKMTV  265 (673)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~-~~~~~~~~~~~~~~~~  265 (673)
                      .............|+++.... ..........++++++|+|||||||.||||+++|.+++... ..+...+     ++++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~-----~~~~  316 (666)
T PLN02654        243 REDTKWQEGRDVWWQDVVPNY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAF-----DYKP  316 (666)
T ss_pred             ccccccccCCcccHHHHhhcC-CCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhc-----CCCC
Confidence            000000001123355554332 11122234578999999999999999999999999986543 3344444     7889


Q ss_pred             CcEEEEecchHhHHHHHH-hHHHhhcCcEEEEecC-----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhch
Q 005867          266 DDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP  339 (673)
Q Consensus       266 ~d~~l~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~  339 (673)
                      +|++++.+|++|.+|+.. ++.+|..|++++++++     ++..+++.|+++++|+++++|+++..|.+...+.      
T Consensus       317 ~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------  390 (666)
T PLN02654        317 TDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEY------  390 (666)
T ss_pred             CcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccc------
Confidence            999999999999998765 5678999999999864     6899999999999999999999999886531100      


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcC---CceeeecC
Q 005867          340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYG  416 (673)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g---~~v~~~YG  416 (673)
                                                   ...++        +++||.++++|+++++++.+++.+.+|   +++.+.||
T Consensus       391 -----------------------------~~~~~--------l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg  433 (666)
T PLN02654        391 -----------------------------VTRHS--------RKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWW  433 (666)
T ss_pred             -----------------------------cccCC--------hhheeEEEEecCCCCHHHHHHHHHHhCCCCCceecccc
Confidence                                         00011        148999999999999999999999887   78999999


Q ss_pred             CCCCCCcccccCCCC-ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEec--CCccccccCCchhhhhhc---
Q 005867          417 LTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---  490 (673)
Q Consensus       417 ~tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~g--p~~~~gy~~~~~~~~~~~---  490 (673)
                      +||+++......... ...++++|.|++|++++|+| +++..  ++.++.|||++++  |.++.|||++++.+...|   
T Consensus       434 ~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~--~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~  510 (666)
T PLN02654        434 QTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKE--IEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKP  510 (666)
T ss_pred             ccccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCC--CCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhc
Confidence            999987665443322 33458999999999999999 66553  4456789999999  789999999999888776   


Q ss_pred             cCCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHH
Q 005867          491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDT  567 (673)
Q Consensus       491 ~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~  567 (673)
                      .+|||+|||+|++|+||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+++++..
T Consensus       511 ~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~  589 (666)
T PLN02654        511 FAGYYFSGDGCSRDKDGYYWLTGRVDDVINV-SGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVP  589 (666)
T ss_pred             CCCEEEeCceEEECCCCcEEEeeeccCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCC
Confidence            3799999999999999999999999999997 7999999999999999999999999997764   47999999987531


Q ss_pred             HHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccc
Q 005867          568 KKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLK  647 (673)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GK  647 (673)
                                       ...+++    ++|+++++. +             |+.|++|+.|++++      .+|+|.+||
T Consensus       590 -----------------~~~~l~----~~l~~~~~~-~-------------L~~~~~P~~i~~v~------~lP~T~sGK  628 (666)
T PLN02654        590 -----------------YSEELR----KSLILTVRN-Q-------------IGAFAAPDKIHWAP------GLPKTRSGK  628 (666)
T ss_pred             -----------------CCHHHH----HHHHHHHHH-h-------------CCCCcCCCEEEECC------CCCCCCCcC
Confidence                             112223    333333332 3             99999999999983      336999999


Q ss_pred             cchHHHHHHHHH
Q 005867          648 KKRNKLLIYYQV  659 (673)
Q Consensus       648 v~R~~l~~~~~~  659 (673)
                      ++|+.|++.+..
T Consensus       629 i~r~~l~~~~~~  640 (666)
T PLN02654        629 IMRRILRKIASR  640 (666)
T ss_pred             chHHHHHHHHcC
Confidence            999999988754

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.2e-65  Score=570.70  Aligned_cols=496  Identities=20%  Similarity=0.195  Sum_probs=403.5

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHH
Q 005867           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (673)
Q Consensus        42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~  121 (673)
                      .++.++|+++|+++||++|+++.   +      +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus        49 ~~~~~~~~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~  119 (549)
T PRK07788         49 GPFAGLVAHAARRAPDRAALIDE---R------GTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAA  119 (549)
T ss_pred             chHHHHHHHHHHHCCCceEEEEC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            58999999999999999999864   3      47999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecHH
Q 005867          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (673)
Q Consensus       122 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  201 (673)
                      +++|++++|+++.++.+++.++++.++++++|+++.....+... ......+..+........       .....+.+++
T Consensus       120 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  191 (549)
T PRK07788        120 GKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSAL-PPDLGRLRAWGGNPDDDE-------PSGSTDETLD  191 (549)
T ss_pred             HhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhh-ccccccceEEEEecCccc-------cCCcCcccHH
Confidence            99999999999999999999999999999999998766554332 112222222222221110       0112355677


Q ss_pred             HHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHH
Q 005867          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (673)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl  281 (673)
                      ++......   ...+..+++.++++|||||||.||+|.++|+++...+......+     ++..++++++..|++|.+|+
T Consensus       192 ~~~~~~~~---~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~  263 (549)
T PRK07788        192 DLIAGSST---APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRV-----PFRAGETTLLPAPMFHATGW  263 (549)
T ss_pred             HHhcCCCC---CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhC-----CCCcCCeEEEccchHHHHHH
Confidence            77654322   12233467889999999999999999999999999877766655     67889999999999999999


Q ss_pred             HHhHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcC
Q 005867          282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (673)
Q Consensus       282 ~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (673)
                      ...+.++..|+++++... ++..+++.++++++|+++++|+++..+++........                        
T Consensus       264 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~------------------------  319 (549)
T PRK07788        264 AHLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAK------------------------  319 (549)
T ss_pred             HHHHHHHHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCC------------------------
Confidence            877788999999988766 9999999999999999999999999886532210000                        


Q ss_pred             CcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCccccCCcCC
Q 005867          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP  440 (673)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~  440 (673)
                                         ...++||.+++||+++++++.+.+.+.++.++++.||+||++..+.....+.....+++|.
T Consensus       320 -------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~  380 (549)
T PRK07788        320 -------------------YDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGR  380 (549)
T ss_pred             -------------------CCCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhhhhhcCCCccc
Confidence                               0124899999999999999999999999999999999999987655443332334478999


Q ss_pred             CccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCCcEEEeecCCCeEE
Q 005867          441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK  520 (673)
Q Consensus       441 ~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~  520 (673)
                      |+++++++++| +++.  +++.|+.|||+++|+.++.||+++++.   ...+|||+|||+|++|++|.+++.||.||+|+
T Consensus       381 ~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~---~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~  454 (549)
T PRK07788        381 PPKGVTVKILD-ENGN--EVPRGVVGRIFVGNGFPFEGYTDGRDK---QIIDGLLSSGDVGYFDEDGLLFVDGRDDDMIV  454 (549)
T ss_pred             CCCCcEEEEEC-CCcC--CCCCCCeEEEEEeCCCccccccCCCcc---cccCCceecCceEEEcCCCCEEEeccCcceEE
Confidence            99999999999 6555  444578999999999999999998765   34589999999999999999999999999999


Q ss_pred             cCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHH
Q 005867          521 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL  597 (673)
Q Consensus       521 ~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  597 (673)
                      + +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+++++..                .+.+++++++++. 
T Consensus       455 ~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~----------------~~~~~l~~~~~~~-  516 (549)
T PRK07788        455 S-GGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAA----------------LDEDAIKDYVRDN-  516 (549)
T ss_pred             E-CCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCC----------------CCHHHHHHHHHHh-
Confidence            6 8999999999999999999999999997754   36899999876421                1233444444443 


Q ss_pred             HHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 005867          598 KNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  656 (673)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~  656 (673)
                                           ||.|++|..|++++      .+|+|++||++|++|+++
T Consensus       517 ---------------------l~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~~  548 (549)
T PRK07788        517 ---------------------LARYKVPRDVVFLD------ELPRNPTGKVLKRELREM  548 (549)
T ss_pred             ---------------------hhcCCCCcEEEEeC------CCCCCCCcCEeHHHhhcc
Confidence                                 99999999999983      346999999999999753

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.5e-64  Score=563.30  Aligned_cols=498  Identities=21%  Similarity=0.177  Sum_probs=388.5

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      ..++.+.|.+.++++|+++|+.+.   +.     +++||+||.+++.++|+.|.+   .+||+|+++++|++++++++||
T Consensus        18 ~~~~~~~~~~~~~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~lA   86 (539)
T PRK06334         18 GKTVLESFLKLCSEMTTATVCWDE---QL-----GKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYFA   86 (539)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEeC---CC-----CcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHHH
Confidence            478999999999999999998754   32     479999999999999999987   3899999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecH
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  200 (673)
                      |+++|++++|+++.++.+++.++|+.++++++|++......+.............++..++....            ..+
T Consensus        87 ~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~~  154 (539)
T PRK06334         87 TLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKE------------LSF  154 (539)
T ss_pred             HHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhh------------ccH
Confidence            99999999999999999999999999999999998876554422111100001123333221100            000


Q ss_pred             HHHHhc-----Ccc----CCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEE
Q 005867          201 DEFLHL-----GKV----NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS  271 (673)
Q Consensus       201 ~~~~~~-----~~~----~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~  271 (673)
                      .+....     ...    .........++++++++|||||||.||+|.++|+++..........+     ++..+|++++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~  229 (539)
T PRK06334        155 WEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFF-----SPKEDDVMMS  229 (539)
T ss_pred             HHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCCCceEEE
Confidence            010000     000    00012245679999999999999999999999999998877766555     6788999999


Q ss_pred             ecchHhHHHHHH-hHHHhhcCcEEEEecC--CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 005867          272 FLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (673)
Q Consensus       272 ~~p~~~~~gl~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (673)
                      ++|++|.+|+.. .+.++..|+++++...  ++..+++.|+++++|++.++|+++..|++......              
T Consensus       230 ~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------------  295 (539)
T PRK06334        230 FLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQE--------------  295 (539)
T ss_pred             ecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcc--------------
Confidence            999999999864 5677999999888753  89999999999999999999999998875422110              


Q ss_pred             HHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCccccc
Q 005867          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVC  427 (673)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~  427 (673)
                                                     ..+++||.+++||+++++++.+++.+.+ ++.+++.||+||++.+++..
T Consensus       296 -------------------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~  344 (539)
T PRK06334        296 -------------------------------SCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITIN  344 (539)
T ss_pred             -------------------------------cccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEec
Confidence                                           0114899999999999999999999988 68999999999999776655


Q ss_pred             CCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc--cCCccccCceEEECC
Q 005867          428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDGWFHTGDIGQILP  505 (673)
Q Consensus       428 ~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~--~~g~~~TGDlg~~~~  505 (673)
                      ........+++|.|+++++++|+| +++ ..+++.|+.|||+|+|+.++.||+++++.+....  .+|||+|||+|++|+
T Consensus       345 ~~~~~~~~~~vG~p~~g~~v~i~d-~~~-~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~  422 (539)
T PRK06334        345 TVNSPKHESCVGMPIRGMDVLIVS-EET-KVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDR  422 (539)
T ss_pred             cCCCCCCCCcCceecCCCEEEEEc-CCC-CccCCCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECC
Confidence            433333346899999999999998 433 3466777899999999999999999998654322  267999999999999


Q ss_pred             CCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcce------EEEEecCCCC-eEEEEEecChhHHHHHHHHcCCCC
Q 005867          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED------IWVYGDSLKS-MLVAVVVPCEEDTKKWAYSNGHAG  578 (673)
Q Consensus       506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~------~~v~~~~~~~-~~~a~v~~~~~~~~~~~~~~~~~~  578 (673)
                      +|++++.||.+|+||+ +|++|+|.+||++|.+||+|.+      ++|++.+++. .++++++...              
T Consensus       423 ~G~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------------  487 (539)
T PRK06334        423 HGELFLKGRLSRFVKI-GAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEKVRLCLFTTFPT--------------  487 (539)
T ss_pred             CCeEEEEeccCCeEEE-CCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCceEEEEEEeccC--------------
Confidence            9999999999999997 8999999999999999999998      7888877554 4455554322              


Q ss_pred             cHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 005867          579 SFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  658 (673)
Q Consensus       579 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~  658 (673)
                            +.+++++        +++...             ++.|++|+.+.+++      .+|+|++||++|+.|++...
T Consensus       488 ------~~~~~~~--------~l~~~~-------------~~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~~~~  534 (539)
T PRK06334        488 ------SISEVND--------ILKNSK-------------TSSILKISYHHQVE------SIPMLGTGKPDYCSLNALAK  534 (539)
T ss_pred             ------ChHHHHH--------HHHhcC-------------Ccccccchheeeec------ccccccCCcccHHHHHHHHH
Confidence                  2222333        333223             78999999988873      34699999999999998866


Q ss_pred             HHH
Q 005867          659 VEI  661 (673)
Q Consensus       659 ~~~  661 (673)
                      ..+
T Consensus       535 ~~~  537 (539)
T PRK06334        535 SLF  537 (539)
T ss_pred             Hhh
Confidence            543

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=1.4e-64  Score=574.66  Aligned_cols=519  Identities=18%  Similarity=0.209  Sum_probs=405.5

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (673)
Q Consensus        40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l  119 (673)
                      ..|...++|+++++++|+++|+++.   +...+..+++||+||.+++.++|++|++.|+++||+|+++++|++++++++|
T Consensus        55 ~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l  131 (625)
T TIGR02188        55 ELNVSYNCVDRHLEARPDKVAIIWE---GDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAML  131 (625)
T ss_pred             EEEHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4578889999999999999999986   4324456799999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhh---------hhhcccccccc-cceEEEEeCCCcHHHHHH
Q 005867          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQ-RLRVMVCFTSLTAEQKEM  189 (673)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~  189 (673)
                      ||+++|++++|+++.++.+++.++++.++++++|+++....         .+.... ...+ .+..++.++......   
T Consensus       132 A~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---  207 (625)
T TIGR02188       132 ACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEAL-EKCPVSVEHVLVVRRTGNPV---  207 (625)
T ss_pred             HHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHH-HhCCCCccEEEEEcCCCCCc---
Confidence            99999999999999999999999999999999999875321         111111 1111 233344443211100   


Q ss_pred             HhhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhh-hhhhhccccCCCCCCcE
Q 005867          190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDV  268 (673)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~d~  268 (673)
                      . ........|.+++... ..........++++++|+|||||||.||+|+++|++++..... ....+     ++.++|+
T Consensus       208 ~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d~  280 (625)
T TIGR02188       208 P-WVEGRDVWWHDLMAKA-SAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVF-----DIKDGDI  280 (625)
T ss_pred             C-ccccccccHHHHHhhc-CCCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhcc-----CCCCCcE
Confidence            0 0011123466665443 1222333567889999999999999999999999998765433 22233     6788999


Q ss_pred             EEEecchHhHHHHHH-hHHHhhcCcEEEEecC-----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHH
Q 005867          269 YLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR  342 (673)
Q Consensus       269 ~l~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~  342 (673)
                      +++..|++|..+... ++.++..|+++++++.     ++..+++.++++++|+++++|+++..|.+......        
T Consensus       281 ~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--------  352 (625)
T TIGR02188       281 FWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWV--------  352 (625)
T ss_pred             EEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCccc--------
Confidence            999999999988754 6678999999999763     78999999999999999999999988865321100        


Q ss_pred             HHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcC---CceeeecCCCC
Q 005867          343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTE  419 (673)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g---~~v~~~YG~tE  419 (673)
                                                 +        ...+++||.++++|+++++++.+++.+.++   +++++.||+||
T Consensus       353 ---------------------------~--------~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE  397 (625)
T TIGR02188       353 ---------------------------K--------KHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTE  397 (625)
T ss_pred             ---------------------------c--------cCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccc
Confidence                                       0        011248999999999999999999998885   78999999999


Q ss_pred             CCCcccccCCC-CccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEec--CCccccccCCchhhhhhc---cCC
Q 005867          420 TCGPTTVCFPD-EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDG  493 (673)
Q Consensus       420 ~~~~~~~~~~~-~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~g--p~~~~gy~~~~~~~~~~~---~~g  493 (673)
                      +++.+...... ....++++|+|++|++++|+| +++...+ +.|+.|||+++|  |+++.|||++++.+...+   .+|
T Consensus       398 ~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~-~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g  475 (625)
T TIGR02188       398 TGGIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVE-GPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPG  475 (625)
T ss_pred             cCCceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCC-CCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCC
Confidence            99876544332 233458899999999999999 6655443 256899999999  689999999998887776   478


Q ss_pred             ccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHH
Q 005867          494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKW  570 (673)
Q Consensus       494 ~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~  570 (673)
                      ||+|||+|++|+||+++++||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++..   
T Consensus       476 ~~~TGDl~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~---  551 (625)
T TIGR02188       476 YYFTGDGARRDKDGYIWITGRVDDVINV-SGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYE---  551 (625)
T ss_pred             EEECCceEEEcCCCcEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCC---
Confidence            9999999999999999999999999997 7999999999999999999999999997654   47899999887531   


Q ss_pred             HHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccch
Q 005867          571 AYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKR  650 (673)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R  650 (673)
                                    ...+    +.++|++++++ +             |+.+++|+.|++++      .+|+|++||++|
T Consensus       552 --------------~~~~----~~~~l~~~~~~-~-------------l~~~~~P~~i~~v~------~lP~t~sGKi~r  593 (625)
T TIGR02188       552 --------------PDDE----LRKELRKHVRK-E-------------IGPIAKPDKIRFVP------GLPKTRSGKIMR  593 (625)
T ss_pred             --------------CCHH----HHHHHHHHHHh-h-------------cCCCccCcEEEECC------CCCCCCCccchH
Confidence                          1112    22333333332 3             99999999999883      346999999999


Q ss_pred             HHHHHHHHH
Q 005867          651 NKLLIYYQV  659 (673)
Q Consensus       651 ~~l~~~~~~  659 (673)
                      +.|++.+..
T Consensus       594 ~~l~~~~~~  602 (625)
T TIGR02188       594 RLLRKIAAG  602 (625)
T ss_pred             HHHHHHHcC
Confidence            999988754

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=3.5e-64  Score=570.25  Aligned_cols=519  Identities=22%  Similarity=0.233  Sum_probs=405.3

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      +.|+.++|+++|+++|+++|+++... ++.....+++||+||.+++.++|++|++.|+++||+|+++++|++++++++||
T Consensus        24 ~~t~~~~l~~~a~~~p~~~Al~~~~~-~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA  102 (632)
T PRK07529         24 PASTYELLSRAAARHPDAPALSFLLD-ADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWG  102 (632)
T ss_pred             CCCHHHHHHHHHHHCCCCceEEeecc-cCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            36899999999999999999987411 11112347899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhh-----hhhhcccccccccceEEEEeCCCcHH--HHHHH---
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDCRSAQRLRVMVCFTSLTAE--QKEMA---  190 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~---  190 (673)
                      |+++| +++|+++.++++++.++++.++++++|+++...     ..+.... ...+.+..++.++.....  .....   
T Consensus       103 ~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~  180 (632)
T PRK07529        103 GEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVL-AALPELRTVVEVDLARYLPGPKRLAVPL  180 (632)
T ss_pred             HHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHH-hcCCcceeEEEecCcccccccccccccc
Confidence            99999 569999999999999999999999999976432     1221111 122334445444332100  00000   


Q ss_pred             --hhCCCceecHHHHHhcCccCC-ccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCc
Q 005867          191 --VQTGIKPYSWDEFLHLGKVNE-MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD  267 (673)
Q Consensus       191 --~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d  267 (673)
                        .........|.+.+....... .......++++++++|||||||.||+|.++|++++..+......+     .+..++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-----~~~~~d  255 (632)
T PRK07529        181 IRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLL-----GLGPGD  255 (632)
T ss_pred             cccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhc-----CCCCCC
Confidence              001123445666554432221 122334679999999999999999999999999998877666555     678899


Q ss_pred             EEEEecchHhHHHHHH-hHHHhhcCcEEEEecC----C---HHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhch
Q 005867          268 VYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG----D---LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP  339 (673)
Q Consensus       268 ~~l~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~----~---~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~  339 (673)
                      ++++.+|++|.+++.. .+.++..|+++++.+.    +   ...+++.++++++|++.++|+++..|.+....       
T Consensus       256 ~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-------  328 (632)
T PRK07529        256 TVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD-------  328 (632)
T ss_pred             EEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-------
Confidence            9999999999999875 5677999999998763    2   36788999999999999999999987642100       


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCC
Q 005867          340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTE  419 (673)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE  419 (673)
                                                     .        ...++||.+++||+++++++.+.+.+.+|+++++.||+||
T Consensus       329 -------------------------------~--------~~~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE  369 (632)
T PRK07529        329 -------------------------------G--------HDISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTE  369 (632)
T ss_pred             -------------------------------C--------CCccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccc
Confidence                                           0        0124899999999999999999999999999999999999


Q ss_pred             CCCcccccCCCCccccCCcCCCccceeEEEeecCCCCC--CCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccc
Q 005867          420 TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY--SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFH  496 (673)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~--~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~  496 (673)
                      ++.++...........+++|.|+++++++++..++++.  .+++.|+.|||+|+||+++.||++++. +...| .+|||+
T Consensus       370 ~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~-~~~~~~~~gw~~  448 (632)
T PRK07529        370 ATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAH-NKGLWLEDGWLN  448 (632)
T ss_pred             cCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCcc-ccccccCCCceE
Confidence            99877666544444558999999999999976333331  566778899999999999999998654 44555 689999


Q ss_pred             cCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHH
Q 005867          497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYS  573 (673)
Q Consensus       497 TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~  573 (673)
                      |||+|++|+||++++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++..      
T Consensus       449 TGDlg~~d~dG~l~i~GR~~d~i~~-~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~------  521 (632)
T PRK07529        449 TGDLGRIDADGYFWLTGRAKDLIIR-GGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGAS------  521 (632)
T ss_pred             cCcEEEEcCCceEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCC------
Confidence            9999999999999999999999996 8999999999999999999999999997654   47899999876431      


Q ss_pred             cCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCc-cceeeeEEEEecCCCCCCCCccccccccchHH
Q 005867          574 NGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLR-GFEHIKGVILDPRPFDMERDLVTATLKKKRNK  652 (673)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp-~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~  652 (673)
                                .+.+++.+++.+.                      |+ .+++|+.|++++      .+|+|++||++|++
T Consensus       522 ----------~~~~~l~~~~~~~----------------------l~~~~~~P~~i~~v~------~lP~t~~GKi~r~~  563 (632)
T PRK07529        522 ----------ATEAELLAFARDH----------------------IAERAAVPKHVRILD------ALPKTAVGKIFKPA  563 (632)
T ss_pred             ----------CCHHHHHHHHHHh----------------------cchhccCCcEEEEec------CCCCCCCCcccHHH
Confidence                      0233444444433                      65 578999999983      33699999999999


Q ss_pred             HHHHHHH
Q 005867          653 LLIYYQV  659 (673)
Q Consensus       653 l~~~~~~  659 (673)
                      |++++..
T Consensus       564 Lr~~~~~  570 (632)
T PRK07529        564 LRRDAIR  570 (632)
T ss_pred             HHHHHHH
Confidence            9998855

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=1.8e-64  Score=572.92  Aligned_cols=526  Identities=17%  Similarity=0.154  Sum_probs=400.7

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHH
Q 005867           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (673)
Q Consensus        39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~  118 (673)
                      ...|.+.++|+++++.+|+++|+++.   +...+..+++||+||.+++.++|++|++.|+++||+|+++++|++++++++
T Consensus        49 ~~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~  125 (628)
T TIGR02316        49 GRTNLCHNALDRHLDERGEQLALVTV---SSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAM  125 (628)
T ss_pred             CEeeHHHHHHHHHhCcCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            44677889999999899999999975   333344478999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhh---------hhhcccccccccceEEEEeCCCcHHHHHH
Q 005867          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQRLRVMVCFTSLTAEQKEM  189 (673)
Q Consensus       119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  189 (673)
                      |||+++|++++|+++.++.+++..+++.++++++|+++....         .+.............++.++......   
T Consensus       126 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---  202 (628)
T TIGR02316       126 LACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPM---  202 (628)
T ss_pred             HHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc---
Confidence            999999999999999999999999999999999999864321         11110000111223444443211000   


Q ss_pred             HhhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHH-HhhhhhhhccccCCCCCCcE
Q 005867          190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF-VSGVDLFLDQFEDKMTVDDV  268 (673)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~-~~~~~~~~~~~~~~~~~~d~  268 (673)
                       .........|.++.........+.....++++++|+|||||||.||||+++|.+++.. .......+     ++.++|+
T Consensus       203 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~  276 (628)
T TIGR02316       203 -RLIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIF-----GIRAGQV  276 (628)
T ss_pred             -CcccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCcE
Confidence             0001122456665544321222222346789999999999999999999999998644 33333344     6788999


Q ss_pred             EEEecchHhHHHHH-HhHHHhhcCcEEEEecC-----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHH
Q 005867          269 YLSFLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR  342 (673)
Q Consensus       269 ~l~~~p~~~~~gl~-~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~  342 (673)
                      +++..|++|..++. .++.++..|++++++++     ++..+++.++++++|+++++|+++..|.+.....         
T Consensus       277 ~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------  347 (628)
T TIGR02316       277 MFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAW---------  347 (628)
T ss_pred             EEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc---------
Confidence            99999999998875 46678999999999763     6889999999999999999999998775421100         


Q ss_pred             HHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCC
Q 005867          343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG  422 (673)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~  422 (673)
                                                .+        ...+++||.+++||+++++++.+++.+.++.++++.||+||++.
T Consensus       348 --------------------------~~--------~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~  393 (628)
T TIGR02316       348 --------------------------LR--------KHDLSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGW  393 (628)
T ss_pred             --------------------------cc--------cCCccceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCc
Confidence                                      00        11125999999999999999999999989999999999999986


Q ss_pred             cccccCCC---CccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecC---CccccccCCchhhhhhc----cC
Q 005867          423 PTTVCFPD---EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESI----ID  492 (673)
Q Consensus       423 ~~~~~~~~---~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp---~~~~gy~~~~~~~~~~~----~~  492 (673)
                      .+.....+   .....+++|.|++|++++|+| ++.+ .+++.|+.|||+++||   +++.+|+++++.+...+    .+
T Consensus       394 ~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g-~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~  471 (628)
T TIGR02316       394 PVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLD-EATG-RPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKR  471 (628)
T ss_pred             eeecCCCCCCcCCCCCCCcccCcCCceEEEEE-CCCC-CCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCC
Confidence            54333221   123347899999999999999 4322 3455678999999998   46789999988776654    46


Q ss_pred             CccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHH
Q 005867          493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKK  569 (673)
Q Consensus       493 g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~  569 (673)
                      +||+|||+|++|+||+++++||.||+||+ +|++|+|.+||++|.+||+|.||+|++.+++   +.++++|+++++... 
T Consensus       472 ~~~~TGD~g~~d~dG~l~i~GR~dd~ik~-~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~-  549 (628)
T TIGR02316       472 PLYSSFDWGIRDEDGYTFILGRTDDVINV-AGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSA-  549 (628)
T ss_pred             CEEECCceEEEcCCCcEEEEEcCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCccc-
Confidence            79999999999999999999999999997 7999999999999999999999999997764   478899988754210 


Q ss_pred             HHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccc
Q 005867          570 WAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKK  649 (673)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~  649 (673)
                                     .+..-...+.++|++++++ +             |+.|++|+.|++++      .+|+|++||++
T Consensus       550 ---------------~~~~~~~~~~~~i~~~~~~-~-------------L~~~~~P~~v~~v~------~lP~t~sGKi~  594 (628)
T TIGR02316       550 ---------------GDAHDPHAVETGMMDCVVR-Q-------------LGAVARPARVYFVA------ALPKTRSGKLL  594 (628)
T ss_pred             ---------------ccccchHHHHHHHHHHHHH-h-------------cCCCcCCCEEEEcC------CCCCCCchHHH
Confidence                           0000001122334444332 3             99999999999983      33699999999


Q ss_pred             hHHHHHHHH
Q 005867          650 RNKLLIYYQ  658 (673)
Q Consensus       650 R~~l~~~~~  658 (673)
                      |+.|++.+.
T Consensus       595 r~~L~~~~~  603 (628)
T TIGR02316       595 RRSIQALAE  603 (628)
T ss_pred             HHHHHHHHc
Confidence            999998764

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-63  Score=561.27  Aligned_cols=509  Identities=18%  Similarity=0.199  Sum_probs=410.6

Q ss_pred             CCCcHHHHHHHHHH-hCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHH
Q 005867           40 DLNTAWDIFSMSVQ-KYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (673)
Q Consensus        40 ~~~tl~~~l~~~a~-~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~  118 (673)
                      ..+.+.+++++++. .+|+++|+++.   +..  ..+++||+||.+++.++|.+|.+.|+++||+|+++++|++++++++
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~--~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  115 (570)
T PRK04319         41 KVNIAYEAIDRHADGGRKDKVALRYL---DAS--RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFAL  115 (570)
T ss_pred             ceeHHHHHHHHhhccCCCCceEEEEE---CCC--CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHH
Confidence            45777889998887 58999999876   432  2368999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCcee
Q 005867          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (673)
Q Consensus       119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  198 (673)
                      |||+++|++++|+++.++.+++.++++.++++++|+++.........   ..+....++..+....        ......
T Consensus       116 la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~~  184 (570)
T PRK04319        116 LGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPAD---DLPSLKHVLLVGEDVE--------EGPGTL  184 (570)
T ss_pred             HHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccchh---cCCCceEEEEECCCcC--------CCcCcc
Confidence            99999999999999999999999999999999999998765443211   2233444544443211        111234


Q ss_pred             cHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhH
Q 005867          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (673)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~  278 (673)
                      ++.+++..... .....+..++++++++|||||||.||+|.++|++++..+......+     ++..+|++++..|++|.
T Consensus       185 ~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~  258 (570)
T PRK04319        185 DFNALMEQASD-EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVL-----DLHEDDVYWCTADPGWV  258 (570)
T ss_pred             CHHHHHhhcCC-cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhc-----CCCCCceEEecCChHHh
Confidence            56666544322 2223345678999999999999999999999999998877766655     77889999999999999


Q ss_pred             HHHHH-hHHHhhcCcEEEEecC--CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 005867          279 LDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (673)
Q Consensus       279 ~gl~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (673)
                      +|+.. .+.++..|+++++...  ++..+++.++++++|+++++|++++.|.+.....                      
T Consensus       259 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------  316 (570)
T PRK04319        259 TGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDL----------------------  316 (570)
T ss_pred             hCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcc----------------------
Confidence            88654 6678999999988764  8999999999999999999999999876421100                      


Q ss_pred             hhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCcccc
Q 005867          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV  435 (673)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~  435 (673)
                                   ....        .+++||.+++||+++++++.+++.+.+|.++++.||+||+++.+...........
T Consensus       317 -------------~~~~--------~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~  375 (570)
T PRK04319        317 -------------VKKY--------DLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKP  375 (570)
T ss_pred             -------------cccC--------CcccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCCCCCCC
Confidence                         0000        1148999999999999999999999999999999999999987654433333345


Q ss_pred             CCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEec--CCccccccCCchhhhhhccCCccccCceEEECCCCcEEEee
Q 005867          436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID  513 (673)
Q Consensus       436 ~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~g--p~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~G  513 (673)
                      +++|.|+++++++|++ +++...  +.|+.|||+++|  |.++.||+++++.+.+.|.+|||+|||+|+++++|.++++|
T Consensus       376 ~~~G~p~~g~~~~i~d-~~~~~~--~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~~gw~~TGDl~~~~~~g~l~~~G  452 (570)
T PRK04319        376 GSMGKPLPGIEAAIVD-DQGNEL--PPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGDSAYMDEDGYFWFQG  452 (570)
T ss_pred             CcCcCCCCCCEEEEEC-CCCCCC--CCCCceEEEEcCCCChHHhHhcCCHHHhhhhhcCCceEeCcEEEECCCeeEEEEe
Confidence            8899999999999999 655543  567899999997  88999999999999999999999999999999999999999


Q ss_pred             cCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHH
Q 005867          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ  590 (673)
Q Consensus       514 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (673)
                      |.+|+|+. +|++|+|.+||++|.+||.|.+++|++.+++   +.++++|++.++..                 ..+.+ 
T Consensus       453 R~~d~i~~-~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~-----------------~~~~~-  513 (570)
T PRK04319        453 RVDDVIKT-SGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYE-----------------PSEEL-  513 (570)
T ss_pred             cCCCEEEE-CCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCCC-----------------CCHHH-
Confidence            99999997 8999999999999999999999999997754   47888888876421                 11122 


Q ss_pred             HHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 005867          591 NYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  658 (673)
Q Consensus       591 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~  658 (673)
                         .++|.++++. +             |+.|++|..|++++      .+|+|++||++|+.|+++..
T Consensus       514 ---~~~l~~~~~~-~-------------l~~~~~P~~i~~v~------~iP~t~~GKv~r~~L~~~~~  558 (570)
T PRK04319        514 ---KEEIRGFVKK-G-------------LGAHAAPREIEFKD------KLPKTRSGKIMRRVLKAWEL  558 (570)
T ss_pred             ---HHHHHHHHHH-h-------------cccccCCcEEEEeC------CCCCCCchhhhHHHHHHHHh
Confidence               2233333332 3             99999999999883      34699999999999998763

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.4e-63  Score=565.41  Aligned_cols=517  Identities=19%  Similarity=0.220  Sum_probs=402.1

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      .+...++|+++++++|+++|+++.   +...+..+++||+||.+++.++|++|++.|+++||+|+++++|++++++++||
T Consensus        66 ~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA  142 (637)
T PRK00174         66 LNVSYNCLDRHLKTRGDKVAIIWE---GDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLA  142 (637)
T ss_pred             eEHHHHHHHHhhccCCCCeEEEEE---CCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            355678898899999999999975   33223457899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhh---------hhhcccccccccceEEEEeCCCcHHHHHHHh
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV  191 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  191 (673)
                      |+++|++++|+++.++.+++.++++.++++++|+++....         .+... ....+....++.........    .
T Consensus       143 ~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~  217 (637)
T PRK00174        143 CARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEA-LANCPSVEKVIVVRRTGGDV----D  217 (637)
T ss_pred             HHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHH-HHhCCCccEEEEEcCCCCCc----C
Confidence            9999999999999999999999999999999999875421         11111 11122334444443211000    0


Q ss_pred             hCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhh-hhhhhccccCCCCCCcEEE
Q 005867          192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYL  270 (673)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~d~~l  270 (673)
                      ........+.++.... ..........++++++|+|||||||.||+|+++|++++..... ....+     ++..+|+++
T Consensus       218 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d~~~  291 (637)
T PRK00174        218 WVEGRDLWWHELVAGA-SDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVF-----DYKDGDVYW  291 (637)
T ss_pred             cCCCCcccHHHHHhhc-CCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhcc-----CCCCCcEEE
Confidence            0011223456655432 2222233457889999999999999999999999998765433 22223     677899999


Q ss_pred             EecchHhHHHHHH-hHHHhhcCcEEEEecC-----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHH
Q 005867          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI  344 (673)
Q Consensus       271 ~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~  344 (673)
                      +..|++|..++.. ++.++..|+++++++.     ++..+++.++++++|++.++|+++..|.+......          
T Consensus       292 ~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~----------  361 (637)
T PRK00174        292 CTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHP----------  361 (637)
T ss_pred             EcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCccc----------
Confidence            9999999988764 6678999999998763     68999999999999999999999988765311100          


Q ss_pred             HHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcC---CceeeecCCCCCC
Q 005867          345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTETC  421 (673)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g---~~v~~~YG~tE~~  421 (673)
                                                       ....+++||.++++|+++++++.+++.+.++   +++++.||+||++
T Consensus       362 ---------------------------------~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~  408 (637)
T PRK00174        362 ---------------------------------KKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETG  408 (637)
T ss_pred             ---------------------------------ccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccC
Confidence                                             0011248999999999999999999998875   7899999999999


Q ss_pred             CcccccCCCC-ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEec--CCccccccCCchhhhhhc---cCCcc
Q 005867          422 GPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGWF  495 (673)
Q Consensus       422 ~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~g--p~~~~gy~~~~~~~~~~~---~~g~~  495 (673)
                      +.+.....+. ....+++|.|++|++++|+| +++..  ++.|+.|||+++|  |+++.|||++++.+...+   .+|||
T Consensus       409 ~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~--~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~  485 (637)
T PRK00174        409 GIMITPLPGATPLKPGSATRPLPGIQPAVVD-EEGNP--LEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMY  485 (637)
T ss_pred             CceEecCCCCCCcCCCcccCCCCCceEEEEC-CCCCC--CCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEE
Confidence            8665433321 23347899999999999999 66554  4556899999999  689999999998887766   47899


Q ss_pred             ccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHH
Q 005867          496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAY  572 (673)
Q Consensus       496 ~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~  572 (673)
                      +|||+|++|+||+++++||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++..     
T Consensus       486 ~TGDl~~~d~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~-----  559 (637)
T PRK00174        486 FTGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEE-----  559 (637)
T ss_pred             ECCceEEEcCCCcEEEEEecccEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCC-----
Confidence            99999999999999999999999997 7999999999999999999999999997654   47999999876431     


Q ss_pred             HcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHH
Q 005867          573 SNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNK  652 (673)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~  652 (673)
                                  ...+    +.++|+++++ ++             |+.|++|..|++++      .+|+|++||++|+.
T Consensus       560 ------------~~~~----~~~~l~~~l~-~~-------------l~~~~~P~~i~~v~------~lP~t~~GKi~R~~  603 (637)
T PRK00174        560 ------------PSDE----LRKELRNWVR-KE-------------IGPIAKPDVIQFAP------GLPKTRSGKIMRRI  603 (637)
T ss_pred             ------------CCHH----HHHHHHHHHH-hh-------------cCCccCCCEEEEcC------CCCCCCCcchHHHH
Confidence                        1111    2223333333 23             99999999999983      34699999999999


Q ss_pred             HHHHHHH
Q 005867          653 LLIYYQV  659 (673)
Q Consensus       653 l~~~~~~  659 (673)
                      |++.+..
T Consensus       604 L~~~~~~  610 (637)
T PRK00174        604 LRKIAEG  610 (637)
T ss_pred             HHHHHcC
Confidence            9988654

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=1.8e-62  Score=549.01  Aligned_cols=504  Identities=23%  Similarity=0.257  Sum_probs=404.1

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHH
Q 005867           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (673)
Q Consensus        42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~  121 (673)
                      .++.++|+++++.+|+++|+++.   +...+.++.+||.||.++++++|.+|.+.|+++||+|+++++|++++++++|||
T Consensus        24 ~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~  100 (547)
T PRK13295         24 RTINDDLDACVASCPDKTAVTAV---RLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLAC  100 (547)
T ss_pred             CCHHHHHHHHHHHCCCceEEEec---CCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHH
Confidence            57999999999999999999876   433344578999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhh----hhhcccccccccceEEEEeCCCcHHHHHHHhhCCCce
Q 005867          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (673)
Q Consensus       122 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  197 (673)
                      +++|++++|+++.++.+++.++++.++++++|+++....    ...............++.++...             .
T Consensus       101 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~  167 (547)
T PRK13295        101 SRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDG-------------A  167 (547)
T ss_pred             HhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCC-------------c
Confidence            999999999999999999999999999999999875311    11111111223334444443221             1


Q ss_pred             ecHHHHHhcCc-------cCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEE
Q 005867          198 YSWDEFLHLGK-------VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL  270 (673)
Q Consensus       198 ~~~~~~~~~~~-------~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l  270 (673)
                      .++.++.....       ..........++++++++|||||||.||+|.++|+++...+......+     ++..+++++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l  242 (547)
T PRK13295        168 DSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERL-----GLGADDVIL  242 (547)
T ss_pred             cCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHh-----CCCCCCeEE
Confidence            13333332110       011112234678999999999999999999999999998888776666     788899999


Q ss_pred             EecchHhHHHHHH-hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 005867          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (673)
Q Consensus       271 ~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (673)
                      +.+|++|..++.. .+.++..|+++++.+. ++..+++.++++++|.+.++|+++..+........              
T Consensus       243 ~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~--------------  308 (547)
T PRK13295        243 MASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESG--------------  308 (547)
T ss_pred             EecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccC--------------
Confidence            9999999998765 5677999999998776 89999999999999999999999988765321100              


Q ss_pred             HHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccC
Q 005867          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF  428 (673)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~  428 (673)
                                                     ..+++||.+++||+++++++.+.+.+.++.++++.||+||++.+++...
T Consensus       309 -------------------------------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~  357 (547)
T PRK13295        309 -------------------------------RPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKL  357 (547)
T ss_pred             -------------------------------CCcccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeeccC
Confidence                                           0124899999999999999999999989999999999999987765544


Q ss_pred             CCC-ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCC
Q 005867          429 PDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG  507 (673)
Q Consensus       429 ~~~-~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G  507 (673)
                      ... .....++|.|+++++++|+| +++.  +++.|+.|||+|+|+.++.||+++++.+... .+|||+|||+|+++++|
T Consensus       358 ~~~~~~~~~~~G~~~~~~~v~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~~TGD~~~~~~~g  433 (547)
T PRK13295        358 DDPDERASTTDGCPLPGVEVRVVD-ADGA--PLPAGQIGRLQVRGCSNFGGYLKRPQLNGTD-ADGWFDTGDLARIDADG  433 (547)
T ss_pred             CCcchhccCccccccCCcEEEEEC-CCCC--CCCCCCCCeEEEEcCcccccccCCccccccC-CCCCeecceEEEEcCCc
Confidence            322 22236889999999999999 5544  4566789999999999999999999888766 68899999999999999


Q ss_pred             cEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHh
Q 005867          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC  584 (673)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~  584 (673)
                      ++++.||.+|+|++ +|++|+|.+||++|.+|++|.+++|++.++.   +.++++|++.++..                .
T Consensus       434 ~l~~~gR~~~~i~~-~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~----------------~  496 (547)
T PRK13295        434 YIRISGRSKDVIIR-GGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQS----------------L  496 (547)
T ss_pred             eEEEEeccCCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCC----------------C
Confidence            99999999999996 8999999999999999999999999996644   47889998875421                0


Q ss_pred             ccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 005867          585 SLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  659 (673)
Q Consensus       585 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~  659 (673)
                      ...++.+        ++.+..             |+.|++|+.+++++      .+|+|++||++|++|++++.+
T Consensus       497 ~~~~l~~--------~~~~~~-------------l~~~~~P~~i~~v~------~lP~t~sgK~~r~~L~~~~~~  544 (547)
T PRK13295        497 DFEEMVE--------FLKAQK-------------VAKQYIPERLVVRD------ALPRTPSGKIQKFRLREMLRG  544 (547)
T ss_pred             CHHHHHH--------HHHhcc-------------CccccCCcEEEEec------cCCCCCCccccHHHHHHHHhc
Confidence            1122333        332234             99999999999983      336999999999999987754

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.7e-64  Score=489.39  Aligned_cols=502  Identities=20%  Similarity=0.188  Sum_probs=423.8

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (673)
Q Consensus        40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l  119 (673)
                      +..++.++|..+|.++||++|+++.   +      +.+||+||.+++.++|++|++.|+++||+|++.+||..++++++|
T Consensus        26 ~d~~l~d~L~~~A~~~pdriAv~d~---~------~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~F   96 (542)
T COG1021          26 QDRTLTDILTDHAARYPDRIAVIDG---E------RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFF   96 (542)
T ss_pred             cCCcHHHHHHHHHhhcCCceEEecC---c------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHH
Confidence            4689999999999999999999964   2      579999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhh----hhhcccccccccceEEEEeCCCcHHHHHHHhhCCC
Q 005867          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (673)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  195 (673)
                      |++++|..+|.--|.....+|..+.+..+++.+|.++....    .+........+.++.+++.++....          
T Consensus        97 ALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~----------  166 (542)
T COG1021          97 ALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHP----------  166 (542)
T ss_pred             HHHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCc----------
Confidence            99999999998889889999999999999999999875322    2222233345677777777554311          


Q ss_pred             ceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecch
Q 005867          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (673)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~  275 (673)
                       ...+..+.... ....+..+.+++++++...+.||||.||.|+.||.....++..-.+.+     .++..+++++.+|.
T Consensus       167 -~~~~~~~~~~a-~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC-----~~~~~tvyL~~LP~  239 (542)
T COG1021         167 -SVLEAALCHPA-GLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC-----GFDQQTVYLCALPA  239 (542)
T ss_pred             -chhhhhhhCcc-ccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhh-----CcCccceEEEeccc
Confidence             11222333222 333445567888999999999999999999999999999998888887     89999999999999


Q ss_pred             HhHHHHHH--hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 005867          276 AHILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK  352 (673)
Q Consensus       276 ~~~~gl~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (673)
                      .|.+.+..  .+..+++|+++|+.+. ++..-...|+++++|+...+|.+...+++......                  
T Consensus       240 AHNfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~------------------  301 (542)
T COG1021         240 AHNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWER------------------  301 (542)
T ss_pred             ccCCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhccc------------------
Confidence            99888774  6788999999999887 99999999999999999999999988876544221                  


Q ss_pred             HHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCc
Q 005867          353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM  432 (673)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~  432 (673)
                                                 ..++|||.+-+||..+++++.+++...+|+.+.+.|||.|.-...+...+...
T Consensus       302 ---------------------------~~LsSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGLvnyTRLDDp~E  354 (542)
T COG1021         302 ---------------------------ADLSSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLVNYTRLDDPPE  354 (542)
T ss_pred             ---------------------------CCchheeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhhhcccccCCchH
Confidence                                       12259999999999999999999999999999999999998766665544444


Q ss_pred             cccCCcCCCc-cceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCceEEECCCCcEE
Q 005867          433 CMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVK  510 (673)
Q Consensus       433 ~~~~~~G~~~-~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~  510 (673)
                      ....+-|+|+ |.-+++|+| .++.  ++++|+.|+|..+||..++||++.|+.+..+| .+|+|+|||+.++|+||++.
T Consensus       355 ~i~~TQGrPlsP~DEvrvvD-~dg~--pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~  431 (542)
T COG1021         355 IIIHTQGRPLSPDDEVRVVD-ADGN--PVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLV  431 (542)
T ss_pred             heeecCCCcCCCcceeEEec-CCCC--CCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEE
Confidence            5557888888 788999999 5554  67778999999999999999999999999999 89999999999999999999


Q ss_pred             EeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccH
Q 005867          511 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLV  587 (673)
Q Consensus       511 ~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (673)
                      +.||.+|+|+ |+|+||..++||+.|..||.|.+|++++.+|+   +..+|||+.++...                 +..
T Consensus       432 V~GR~KDQIN-RgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~~-----------------~~~  493 (542)
T COG1021         432 VEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPL-----------------RAA  493 (542)
T ss_pred             EEeeehhhhc-cccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCCC-----------------CHH
Confidence            9999999999 79999999999999999999999999998865   68899999987642                 334


Q ss_pred             HHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 005867          588 QLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  660 (673)
Q Consensus       588 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~  660 (673)
                      +++.++.        +..             |..|++|++|.+++      ++|.|+-|||++++|++.+...
T Consensus       494 qlr~~L~--------~~G-------------lAa~K~PDrie~v~------~~P~T~VGKIdKk~Lr~~l~~~  539 (542)
T COG1021         494 QLRRFLR--------ERG-------------LAAFKLPDRIEFVD------SLPLTAVGKIDKKALRRRLASR  539 (542)
T ss_pred             HHHHHHH--------Hcc-------------hhhhcCCcceeecc------cCCCcccccccHHHHHHHhhhh
Confidence            4444444        456             99999999999983      3469999999999999887643

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=2.7e-62  Score=548.66  Aligned_cols=504  Identities=20%  Similarity=0.205  Sum_probs=390.7

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeecccCCC----CCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHH
Q 005867           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKF----GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (673)
Q Consensus        42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~----~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~  117 (673)
                      .++.++|...++++|+++|+++.   ++.+    ..++++||+||.+++.++|++|.+.|+++||+|+++++|+++++++
T Consensus         6 ~~~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~   82 (552)
T PRK09274          6 ANIARHLPRAAQERPDQLAVAVP---GGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFAL   82 (552)
T ss_pred             hhHHHHHHHHHHhCCCcceEEec---cCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHH
Confidence            67889999999999999999875   3321    1234799999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcch--hhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCC
Q 005867          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK--KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (673)
Q Consensus       118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  195 (673)
                      +|||+++|++++|+++.++.+++.++++.++++++|+++.  ....+....   ......++.++...          ..
T Consensus        83 ~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~----------~~  149 (552)
T PRK09274         83 TFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWG---KPSVRRLVTVGGRL----------LW  149 (552)
T ss_pred             HHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccC---ccchhheecccccc----------cc
Confidence            9999999999999999999999999999999999999752  222111110   01112222222110          00


Q ss_pred             ceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecch
Q 005867          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (673)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~  275 (673)
                      ....+.++...............++++++++|||||||.||+|.++|+++...+......+     ++.++++.++.+|+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~pl  224 (552)
T PRK09274        150 GGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDY-----GIEPGEIDLPTFPL  224 (552)
T ss_pred             CCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHh-----CCCCCceeeeccCH
Confidence            1123444432221122223345678999999999999999999999999999888877766     78889999999999


Q ss_pred             HhHHHHHHhHHHhhcCcEEEEec--------CCHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 005867          276 AHILDRVIEEYFFRRGASVGYYH--------GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA  347 (673)
Q Consensus       276 ~~~~gl~~~~~~l~~G~~~v~~~--------~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (673)
                      +|.+++       ..|+++++..        .++..+++.++++++|+++++|+++..|.+......             
T Consensus       225 ~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-------------  284 (552)
T PRK09274        225 FALFGP-------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANG-------------  284 (552)
T ss_pred             HHhhhh-------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcC-------------
Confidence            876543       4577776653        178999999999999999999999998876422110             


Q ss_pred             HHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc--CCceeeecCCCCCCCccc
Q 005867          348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLTETCGPTT  425 (673)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~--g~~v~~~YG~tE~~~~~~  425 (673)
                                                      ..+++||.+++||+++++++.+.+.+.+  |+++++.||+||++++++
T Consensus       285 --------------------------------~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~  332 (552)
T PRK09274        285 --------------------------------IKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISS  332 (552)
T ss_pred             --------------------------------CCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEe
Confidence                                            0124899999999999999999999998  469999999999987655


Q ss_pred             ccCCC---------CccccCCcCCCccceeEEEeecCCC-------CCCCCCCCCCceEEEecCCccccccCCchhhhhh
Q 005867          426 VCFPD---------EMCMVGTAGPVSVYSELRLEEVPEM-------GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRES  489 (673)
Q Consensus       426 ~~~~~---------~~~~~~~~G~~~~~~~v~i~~~~~~-------~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~  489 (673)
                      .....         ......++|+|+++++++|+| +.+       ...+++.|+.|||+++|+.++.||+++++.+...
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd-~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~  411 (552)
T PRK09274        333 IESREILFATRAATDNGAGICVGRPVDGVEVRIIA-ISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLA  411 (552)
T ss_pred             ecchhhhccccccccCCCCcccCccCCCceEEEEe-ccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhhh
Confidence            43221         011123789999999999998 432       2345677889999999999999999999998877


Q ss_pred             c---cCC--ccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC--CeEEEEEec
Q 005867          490 I---IDG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK--SMLVAVVVP  562 (673)
Q Consensus       490 ~---~~g--~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~--~~~~a~v~~  562 (673)
                      |   .+|  ||+|||+|++|++|+|++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.+++  +.++++|++
T Consensus       412 ~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~~v~~  490 (552)
T PRK09274        412 KIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVET-AGGTLYTIPCERIFNTHPGVKRSALVGVGVPGAQRPVLCVEL  490 (552)
T ss_pred             hcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEE-CCEEECcHHHHHHHHhCcccceeEEEEeCCCCCceEEEEEEc
Confidence            6   256  9999999999999999999999999997 7999999999999999999999999987654  368888888


Q ss_pred             ChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCcc
Q 005867          563 CEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLV  642 (673)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~  642 (673)
                      .++..                .+..+    +.+.+++++..               ++.++.|..+++++      .+|+
T Consensus       491 ~~~~~----------------~~~~~----l~~~l~~~l~~---------------~~~~~~~~~~~~~~------~lP~  529 (552)
T PRK09274        491 EPGVA----------------CSKSA----LYQELRALAAA---------------HPHTAGIERFLIHP------SFPV  529 (552)
T ss_pred             cCccc----------------cchHH----HhhhhHHHHHh---------------cCCCcceeEEeccC------CCCc
Confidence            76431                01222    33344444443               55677788888873      3468


Q ss_pred             c--cccccchHHHHHHHHHHH
Q 005867          643 T--ATLKKKRNKLLIYYQVEI  661 (673)
Q Consensus       643 t--~~GKv~R~~l~~~~~~~~  661 (673)
                      |  ++||++|++|++++.+.+
T Consensus       530 t~~~~GKi~r~~L~~~~~~~~  550 (552)
T PRK09274        530 DIRHNAKIFREKLAVWAAKQL  550 (552)
T ss_pred             cccccccccHHHHHHHHHHhh
Confidence            8  799999999999887654

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-62  Score=558.72  Aligned_cols=524  Identities=16%  Similarity=0.151  Sum_probs=399.3

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (673)
Q Consensus        40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l  119 (673)
                      ..|...++|+++++.+|+++|+++.   +..++..+.+||+||.+++.++|++|++.|+++||+|+++++|++++++++|
T Consensus        51 ~~n~~~~~l~~~~~~~p~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l  127 (629)
T PRK10524         51 RTNLCHNAVDRHLAKRPEQLALIAV---STETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAML  127 (629)
T ss_pred             EeeHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            3566789999999999999999975   3333445789999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhh---------hhhhcccccccccceEEEEeCCCcHHHHHHH
Q 005867          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQKEMA  190 (673)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  190 (673)
                      ||+++|++++|+++.++.+++.++++.++++++|+++...         ..+.+...........++.++......    
T Consensus       128 A~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----  203 (629)
T PRK10524        128 ACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM----  203 (629)
T ss_pred             HHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc----
Confidence            9999999999999999999999999999999999976421         111111110111223344443211000    


Q ss_pred             hhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhh-hhhhhccccCCCCCCcEE
Q 005867          191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVY  269 (673)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~d~~  269 (673)
                      .........+.++.........+.....++++++++|||||||.||||.++|.+++..... +...+     ++.++|++
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~-----~~~~~d~~  278 (629)
T PRK10524        204 ARVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIF-----GGKAGETF  278 (629)
T ss_pred             CcccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCCEE
Confidence            0001122345555543222222222346789999999999999999999999987654433 23333     67889999


Q ss_pred             EEecchHhHHHHHH-hHHHhhcCcEEEEecC-----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHH
Q 005867          270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR  343 (673)
Q Consensus       270 l~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~  343 (673)
                      ++..|+.|..+... ++.++..|++++++..     ++..+++.++++++|+++++|+++..|.+.....          
T Consensus       279 ~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~----------  348 (629)
T PRK10524        279 FCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPAL----------  348 (629)
T ss_pred             EEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCccc----------
Confidence            99999999888654 5678999999998763     6889999999999999999999998775421000          


Q ss_pred             HHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCc
Q 005867          344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP  423 (673)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~  423 (673)
                                               .+..        .+++||.+++||+++++++.+++.+.+++++++.||+||++..
T Consensus       349 -------------------------~~~~--------~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~  395 (629)
T PRK10524        349 -------------------------LRKH--------DLSSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWP  395 (629)
T ss_pred             -------------------------cccc--------ChhheeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccch
Confidence                                     0001        1148999999999999999999999999999999999999854


Q ss_pred             ccccCCC---CccccCCcCCCccceeEEEeecC-CCCCCCCCCCCCceEEEecC---CccccccCCchhhhhhc----cC
Q 005867          424 TTVCFPD---EMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESI----ID  492 (673)
Q Consensus       424 ~~~~~~~---~~~~~~~~G~~~~~~~v~i~~~~-~~~~~~~~~g~~GEl~v~gp---~~~~gy~~~~~~~~~~~----~~  492 (673)
                      .......   .....+++|.|+++++++|+| + ++.  +++.|+.|||+++||   +++.+|+++++.+...+    .+
T Consensus       396 ~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~g~--~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (629)
T PRK10524        396 ILAIARGVEDRPTRLGSPGVPMYGYNVKLLN-EVTGE--PCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGR  472 (629)
T ss_pred             hhcCCCCcccCcCCCCCcccCcCCceEEEEe-CCCCC--CCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCC
Confidence            3322221   123347899999999999999 5 444  456678999999998   57889999998776654    35


Q ss_pred             CccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHH
Q 005867          493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKK  569 (673)
Q Consensus       493 g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~  569 (673)
                      |||+|||+|++|+||+++++||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++++|+++++... 
T Consensus       473 ~~~~TGDl~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~-  550 (629)
T PRK10524        473 QVYSTFDWGIRDADGYYFILGRTDDVINV-AGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSL-  550 (629)
T ss_pred             cEEEcCCcEEEcCCCcEEEEEEecCeEEe-CCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCcc-
Confidence            89999999999999999999999999997 7999999999999999999999999997765   478999998764210 


Q ss_pred             HHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccc
Q 005867          570 WAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKK  649 (673)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~  649 (673)
                                     +..+..+.+.++|++++++ +             |+.|++|..|++++      .+|+|++||++
T Consensus       551 ---------------~~~~~~~~~~~~i~~~~~~-~-------------l~~~~~P~~i~~v~------~lP~T~sGKi~  595 (629)
T PRK10524        551 ---------------ADREARLALEKEIMALVDS-Q-------------LGAVARPARVWFVS------ALPKTRSGKLL  595 (629)
T ss_pred             ---------------ccccchHHHHHHHHHHHHh-h-------------cCCCcCCCEEEEcC------CCCCCCCcchH
Confidence                           0111122233444444442 3             99999999999983      33699999999


Q ss_pred             hHHHHHHHH
Q 005867          650 RNKLLIYYQ  658 (673)
Q Consensus       650 R~~l~~~~~  658 (673)
                      |+.|++.+.
T Consensus       596 R~~L~~~~~  604 (629)
T PRK10524        596 RRAIQAIAE  604 (629)
T ss_pred             HHHHHHHHc
Confidence            999998764

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=4.4e-62  Score=538.22  Aligned_cols=477  Identities=25%  Similarity=0.315  Sum_probs=397.9

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      |.++.+.|.++|.++||++|+++.   +      +.+||.||.+++.++|.+|.+.|+++||+|+++++|++++++++||
T Consensus         1 ~~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la   71 (483)
T PRK03640          1 METMPNWLKQRAFLTPDRTAIEFE---E------KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHA   71 (483)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEeC---C------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            578999999999999999999864   3      5899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecH
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  200 (673)
                      |+++|++++|+++..+.+++..+++.++++++++++..........                              ...+
T Consensus        72 ~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~------------------------------~~~~  121 (483)
T PRK03640         72 LQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI------------------------------SVKF  121 (483)
T ss_pred             HHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc------------------------------cccH
Confidence            9999999999999999999999999999999999876544321100                              0113


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHH
Q 005867          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (673)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (673)
                      .++...............++++++++|||||||.||+|.++|.++...+......+     ++..+|++++.+|++|.++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g  196 (483)
T PRK03640        122 AELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNL-----GLTEDDCWLAAVPIFHISG  196 (483)
T ss_pred             HHHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhc-----CCCcCcEEEEecCHHHHHH
Confidence            33332221122222344678999999999999999999999999988776665555     7889999999999999999


Q ss_pred             HHHhHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhc
Q 005867          281 RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG  359 (673)
Q Consensus       281 l~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (673)
                      +...+.++..|+++++.+. ++..+++.++++++|++.++|+++..+.......                          
T Consensus       197 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~--------------------------  250 (483)
T PRK03640        197 LSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG--------------------------  250 (483)
T ss_pred             HHHHHHHHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc--------------------------
Confidence            8888888999999999887 9999999999999999999999999886432110                          


Q ss_pred             CCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCC-CccccCCc
Q 005867          360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD-EMCMVGTA  438 (673)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~-~~~~~~~~  438 (673)
                                          ....++|.+++||+++++++.+.+++. ++++++.||+||++..+...... .....+++
T Consensus       251 --------------------~~~~~lr~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~v  309 (483)
T PRK03640        251 --------------------TYPSSFRCMLLGGGPAPKPLLEQCKEK-GIPVYQSYGMTETASQIVTLSPEDALTKLGSA  309 (483)
T ss_pred             --------------------ccCCcceEEEEcCCCCCHHHHHHHHHh-CCCeeeeeccCcccccccccCcccccccCCCc
Confidence                                011389999999999999999988874 99999999999987654433322 33445899


Q ss_pred             CCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCCcEEEeecCCCe
Q 005867          439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNL  518 (673)
Q Consensus       439 G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~  518 (673)
                      |+|++++++++.+ ++   .+++.|+.|||+++||.++.||+++++.+...|.+|||+|||++++++||.+++.||.+|+
T Consensus       310 G~p~~~~~~~i~~-~~---~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~tGDl~~~~~~g~l~~~GR~~~~  385 (483)
T PRK03640        310 GKPLFPCELKIEK-DG---VVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDL  385 (483)
T ss_pred             ccccCCcEEEEec-CC---CcCCCCCceEEEEECcchhhhhcCCHHHHHHHHhcCCeeccceEEEcCCCCEEEeecccCe
Confidence            9999999999988 43   3566778999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHH
Q 005867          519 IKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILS  595 (673)
Q Consensus       519 i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (673)
                      +++ +|.+|++.+||+.+.++++|.+++|++.+++   ..++++++.....                  +..++.+++.+
T Consensus       386 i~~-~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~  446 (483)
T PRK03640        386 IIS-GGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGEV------------------TEEELRHFCEE  446 (483)
T ss_pred             EEe-CCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCCCC------------------CHHHHHHHHHH
Confidence            996 8999999999999999999999999987654   3577777755422                  33344444443


Q ss_pred             HHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 005867          596 ELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  659 (673)
Q Consensus       596 ~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~  659 (673)
                      .                      |+.|++|+.|++++.      +|+|++||++|++|++++++
T Consensus       447 ~----------------------l~~~~~p~~i~~~~~------iP~t~~gK~~r~~l~~~~~~  482 (483)
T PRK03640        447 K----------------------LAKYKVPKRFYFVEE------LPRNASGKLLRHELKQLVEE  482 (483)
T ss_pred             h----------------------ccCCCCCcEEEEeCC------CCCCCccceeHHHHHHHHhh
Confidence            3                      999999999999833      36999999999999999875

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-62  Score=548.81  Aligned_cols=517  Identities=19%  Similarity=0.172  Sum_probs=394.6

Q ss_pred             CCCCCCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHh
Q 005867           34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ  113 (673)
Q Consensus        34 ~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e  113 (673)
                      +..|+..+.++.+.|..+|+++|+++|+++.   ++.    +.+||+||.+++.++|..|.+.|+++||+|+++++|+++
T Consensus         6 ~~~~~~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e   78 (540)
T PRK05857          6 FQAMPQLPSTVLDRVFEQARQQPEAIALRRC---DGT----SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPE   78 (540)
T ss_pred             ccccccCCcchHHHHHHHHhhCCCcEEEeec---CCC----ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHH
Confidence            4567777889999999999999999999864   442    579999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhC
Q 005867          114 WVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT  193 (673)
Q Consensus       114 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  193 (673)
                      +++++|||+++|++++|+++.++.+++.++++.++++.+|+++...... ........... ++..+.....        
T Consensus        79 ~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~--------  148 (540)
T PRK05857         79 TYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMAS-SAVPEALHSIP-VIAVDIAAVT--------  148 (540)
T ss_pred             HHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhcc-ccccccccccc-eeEeeccccc--------
Confidence            9999999999999999999999999999999999999999988653211 11111111111 1222211000        


Q ss_pred             CCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEec
Q 005867          194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL  273 (673)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~  273 (673)
                        ..  +......  ..........++++++++|||||||.||+|.++|+++.+........ .........++++++.+
T Consensus       149 --~~--~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  221 (540)
T PRK05857        149 --RE--SEHSLDA--ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKE-GLNWVTWVVGETTYSPL  221 (540)
T ss_pred             --cc--ccccccc--cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhc-cccccccccCceeeecC
Confidence              00  0000000  00111233467899999999999999999999999998765433211 00001455678999999


Q ss_pred             chHhHHHHHHhHHHhhcCcEEEEecCCHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 005867          274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (673)
Q Consensus       274 p~~~~~gl~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (673)
                      |++|..++...+.+++.|+++++.+.++..+++.++++++|.++++|+++..+........                   
T Consensus       222 p~~h~~~l~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~-------------------  282 (540)
T PRK05857        222 PATHIGGLWWILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSAN-------------------  282 (540)
T ss_pred             CccccchHHHHHHHhhcceeEEecCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCC-------------------
Confidence            9999999887788899999987755589999999999999999999999988865321100                   


Q ss_pred             HHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCC--
Q 005867          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--  431 (673)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~--  431 (673)
                                                ..++++|.+++||++++....+++ +.+|+++++.||+||++..........  
T Consensus       283 --------------------------~~~~~lr~~~~gG~~~~~~~~~~~-~~~g~~i~~~YG~TE~~~~~~~~~~~~~~  335 (540)
T PRK05857        283 --------------------------ATVPSLRLVGYGGSRAIAADVRFI-EATGVRTAQVYGLSETGCTALCLPTDDGS  335 (540)
T ss_pred             --------------------------CcCccceEEEEcCccCCchhHHHH-HHhCCeeecccCCCcCCceeeeccccccc
Confidence                                      011489999999999998877644 467999999999999986544332221  


Q ss_pred             --ccccCCcCCCccceeEEEeecCCCCCC-C---CCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECC
Q 005867          432 --MCMVGTAGPVSVYSELRLEEVPEMGYS-P---LDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP  505 (673)
Q Consensus       432 --~~~~~~~G~~~~~~~v~i~~~~~~~~~-~---~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~  505 (673)
                        ....+++|.|++|++++|++ +++... +   ++.++.|||+++|+.++.||+++++.+.+.|.+|||+|||+|++|+
T Consensus       336 ~~~~~~~~~G~~~~g~~v~i~d-~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDlg~~d~  414 (540)
T PRK05857        336 IVKIEAGAVGRPYPGVDVYLAA-TDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTGDLLERRE  414 (540)
T ss_pred             ccccccCCcCcccCCcEEEEEC-ccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcCCCceeccceEEEcC
Confidence              11347899999999999998 544321 1   2346789999999999999999999999999999999999999999


Q ss_pred             CCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHH
Q 005867          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLE  582 (673)
Q Consensus       506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~  582 (673)
                      +|++++.||.+|+|++ +|++|+|.+||++|..||+|.+|+|++.++.   +.++++++..+..                
T Consensus       415 ~g~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~----------------  477 (540)
T PRK05857        415 DGFFYIKGRSSEMIIC-GGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAEL----------------  477 (540)
T ss_pred             CceEEEeccccccEec-CCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCCC----------------
Confidence            9999999999999996 8999999999999999999999999997754   3566666665421                


Q ss_pred             HhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 005867          583 LCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  661 (673)
Q Consensus       583 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~  661 (673)
                        . ....+.+.+.+.+.+++ .             |++|++|..+.+++.      +|+|++||++|++|++.+.+.-
T Consensus       478 --~-~~~~~~l~~~~~~~~~~-~-------------l~~~~~P~~v~~~~~------iP~t~~GKi~r~~l~~~~~~~~  533 (540)
T PRK05857        478 --D-ESAARALKHTIAARFRR-E-------------SEPMARPSTIVIVTD------IPRTQSGKVMRASLAAAATADK  533 (540)
T ss_pred             --C-hhhHHHHHHHHHHHHHh-h-------------hccccCCeEEEEhhc------CCCCCCcceeHHHHHHhhhhcc
Confidence              0 11112233333333332 3             999999999999832      3699999999999998887543

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.7e-61  Score=542.75  Aligned_cols=515  Identities=21%  Similarity=0.259  Sum_probs=399.6

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHhHHHH
Q 005867           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEA  117 (673)
Q Consensus        39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~-~gv~~gd~V~i~~~~~~e~~~~  117 (673)
                      .++.|+.++|+++++++|+++|+++.    +     +.+||+||.+++.++|.+|.+ .|+++||+|+++++|+++++++
T Consensus        21 ~~~~~~~~~l~~~a~~~p~~~al~~~----~-----~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~   91 (562)
T PRK05677         21 DEYPNIQAVLKQSCQRFADKPAFSNL----G-----KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVA   91 (562)
T ss_pred             CccCcHHHHHHHHHHhCCCCeeEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHH
Confidence            44568999999999999999999863    3     479999999999999999997 5999999999999999999999


Q ss_pred             HHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCC--cHHHHHHH-----
Q 005867          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL--TAEQKEMA-----  190 (673)
Q Consensus       118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~-----  190 (673)
                      +|||+++|++++|+++..+.+++.++++.++++++|+++.....+.+... . .....++.....  .+......     
T Consensus        92 ~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (562)
T PRK05677         92 VFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLP-K-TGVKHVIVTEVADMLPPLKRLLINAVV  169 (562)
T ss_pred             HHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhh-c-cCcceeEEecccccccchhhhhcccch
Confidence            99999999999999999999999999999999999998765443322111 1 112222221100  00000000     


Q ss_pred             --------hhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCC
Q 005867          191 --------VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK  262 (673)
Q Consensus       191 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~  262 (673)
                              .........+.+.+..............++++++++|||||||.||+|.++|+++...+......+.   ..
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~---~~  246 (562)
T PRK05677        170 KHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMG---SN  246 (562)
T ss_pred             hhccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhc---cC
Confidence                    0000122344555443322222233456799999999999999999999999999887665444331   12


Q ss_pred             CC-CCcEEEEecchHhHHHHHH-hHHHhhcCcEEEEecC--CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhc
Q 005867          263 MT-VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR  338 (673)
Q Consensus       263 ~~-~~d~~l~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~  338 (673)
                      +. ..+++++.+|++|.+++.. ++..+..|++.++.+.  ++..+++.++++++|.++++|+++..+......      
T Consensus       247 ~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~------  320 (562)
T PRK05677        247 LNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAF------  320 (562)
T ss_pred             CCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCccc------
Confidence            23 3468899999999999864 4556777887776654  889999999999999999999999877542100      


Q ss_pred             hHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCC
Q 005867          339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT  418 (673)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~t  418 (673)
                                                     ...        .++++|.+++||+++++++.+.|.+.+++++++.||+|
T Consensus       321 -------------------------------~~~--------~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~t  361 (562)
T PRK05677        321 -------------------------------RKL--------DFSALKLTLSGGMALQLATAERWKEVTGCAICEGYGMT  361 (562)
T ss_pred             -------------------------------ccC--------ChhhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCcc
Confidence                                           000        11389999999999999999999998899999999999


Q ss_pred             CCCCcccccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCcccc
Q 005867          419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHT  497 (673)
Q Consensus       419 E~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~T  497 (673)
                      |++.++....... ..++++|.|+++++++++| +++.  +++.|+.|||+++|+.++.||+++++.+.+.| .+|||+|
T Consensus       362 E~~~~~~~~~~~~-~~~~~vG~~~~~~~v~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~T  437 (562)
T PRK05677        362 ETSPVVSVNPSQA-IQVGTIGIPVPSTLCKVID-DDGN--ELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKT  437 (562)
T ss_pred             ccCcceeecCccC-CCCCccCccCCCCEEEEEC-CCCC--CCCCCCCeEEEEecCccchhhcCCchhhhhccCCCCcccc
Confidence            9987766554432 2347899999999999999 6554  45667899999999999999999999999888 5899999


Q ss_pred             CceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHc
Q 005867          498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSN  574 (673)
Q Consensus       498 GDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~  574 (673)
                      ||+|+++++|.+++.||.+|+|++ +|.+|+|.+||++|.+||+|.+++|++.+++   +.+++++++.++..       
T Consensus       438 GDlg~~~~~G~l~i~GR~~d~i~~-~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~~-------  509 (562)
T PRK05677        438 GDIALIQEDGYMRIVDRKKDMILV-SGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGET-------  509 (562)
T ss_pred             cceEEECCCCcEEEEecCcCeEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCCC-------
Confidence            999999999999999999999997 6999999999999999999999999997754   36788887664321       


Q ss_pred             CCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 005867          575 GHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  654 (673)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~  654 (673)
                               .+..++++++++.                      |++|++|..|++++      .+|+|++||++|++|+
T Consensus       510 ---------~~~~~l~~~~~~~----------------------l~~~~~P~~i~~v~------~iP~t~sGKi~r~~L~  552 (562)
T PRK05677        510 ---------LTKEQVMEHMRAN----------------------LTGYKVPKAVEFRD------ELPTTNVGKILRRELR  552 (562)
T ss_pred             ---------CCHHHHHHHHHHh----------------------hhhccCCcEEEEec------cCCCCCcccccHHHHH
Confidence                     0233444444443                      99999999999983      2369999999999999


Q ss_pred             HHHHHHH
Q 005867          655 IYYQVEI  661 (673)
Q Consensus       655 ~~~~~~~  661 (673)
                      +++.++.
T Consensus       553 ~~~~~~~  559 (562)
T PRK05677        553 DEELKKA  559 (562)
T ss_pred             HHHHHhc
Confidence            8776543

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=6.9e-62  Score=545.33  Aligned_cols=503  Identities=23%  Similarity=0.279  Sum_probs=391.5

Q ss_pred             HHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHhHHHHHHHHH
Q 005867           44 AWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACN  122 (673)
Q Consensus        44 l~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~-~gv~~gd~V~i~~~~~~e~~~~~lA~~  122 (673)
                      +..+|..  +.+|+++|+++.   ++.    .++||.||.++++++|++|.+ .|+++||+|+++++|++++++++|||+
T Consensus        43 ~~~l~~~--~~~~~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~  113 (560)
T PLN02574         43 VSFIFSH--HNHNGDTALIDS---STG----FSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVL  113 (560)
T ss_pred             HHHHhcC--cccCCCCEEEEC---CCC----CcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHH
Confidence            4455554  679999999864   321    369999999999999999998 899999999999999999999999999


Q ss_pred             hcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecHHH
Q 005867          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE  202 (673)
Q Consensus       123 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (673)
                      ++|++++|++|..+.+++.++++.+++++++++......+...      ... ++.++.....     .........|.+
T Consensus       114 ~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~-----~~~~~~~~~~~~  181 (560)
T PLN02574        114 SLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL------GVP-VIGVPENYDF-----DSKRIEFPKFYE  181 (560)
T ss_pred             HhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc------CCc-EEecCccccc-----ccCccCcccHHH
Confidence            9999999999999999999999999999999998765554321      111 1111111000     000111234555


Q ss_pred             HHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHH
Q 005867          203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV  282 (673)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~  282 (673)
                      +..... .........++++++++|||||||.||+|.++|+++...+..+..............++++..+|++|.+|+.
T Consensus       182 ~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~  260 (560)
T PLN02574        182 LIKEDF-DFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLS  260 (560)
T ss_pred             HhhcCC-cccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHH
Confidence            544331 1122234467899999999999999999999999998877655432111000123568889999999999987


Q ss_pred             Hh-HHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcC
Q 005867          283 IE-EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (673)
Q Consensus       283 ~~-~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (673)
                      .. +.++..|+++++.+. ++..+++.++++++|.+.++|+++..|.+.....                           
T Consensus       261 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------------  313 (560)
T PLN02574        261 LFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGV---------------------------  313 (560)
T ss_pred             HHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCcccc---------------------------
Confidence            64 456788999988877 9999999999999999999999999886532100                           


Q ss_pred             CcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCC-CCccccCCc
Q 005867          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFP-DEMCMVGTA  438 (673)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~-~~~~~~~~~  438 (673)
                                       ....++++|.+++||+++++++.+.+.+.+ ++++++.||+||++.+.+.... ......+++
T Consensus       314 -----------------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~v  376 (560)
T PLN02574        314 -----------------CGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSV  376 (560)
T ss_pred             -----------------ccCccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCce
Confidence                             001124899999999999999999998887 7899999999999876543222 122344789


Q ss_pred             CCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCceEEECCCCcEEEeecCCC
Q 005867          439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKN  517 (673)
Q Consensus       439 G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~~GR~~d  517 (673)
                      |.++++++++|+| ++++ .+++.|+.|||||+|++++.||+++++.+...| .+|||+|||+|+++++|++++.||.+|
T Consensus       377 G~~~~~~~v~i~d-~~~g-~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d  454 (560)
T PLN02574        377 GLLAPNMQAKVVD-WSTG-CLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKE  454 (560)
T ss_pred             eeeCCCcEEEEEe-CCCC-cCCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchh
Confidence            9999999999999 4333 456677899999999999999999999998888 689999999999999999999999999


Q ss_pred             eEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHH
Q 005867          518 LIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYIL  594 (673)
Q Consensus       518 ~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  594 (673)
                      +|++ +|++|++.+||++|.+||+|.+++|++.+++   +.++++|+..++..                .+.+++.++++
T Consensus       455 ~i~~-~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~----------------~~~~~l~~~~~  517 (560)
T PLN02574        455 IIKY-KGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGST----------------LSQEAVINYVA  517 (560)
T ss_pred             heEE-CCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCCC----------------CCHHHHHHHHH
Confidence            9997 7999999999999999999999999997654   46888888765321                02234444444


Q ss_pred             HHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 005867          595 SELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  659 (673)
Q Consensus       595 ~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~  659 (673)
                      +.                      |+.|++|+.+.+++      .+|+|++||++|+.|++++.+
T Consensus       518 ~~----------------------l~~~~~p~~v~~v~------~iP~t~~GKi~r~~L~~~~~~  554 (560)
T PLN02574        518 KQ----------------------VAPYKKVRKVVFVQ------SIPKSPAGKILRRELKRSLTN  554 (560)
T ss_pred             Hh----------------------ccCcccCcEEEEee------ccCCCCcchhhHHHHHHHHhh
Confidence            33                      99999999988883      236999999999999988755

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=1.7e-61  Score=540.01  Aligned_cols=522  Identities=25%  Similarity=0.310  Sum_probs=411.9

Q ss_pred             CCCCCceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCC
Q 005867           19 PSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA   98 (673)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv   98 (673)
                      -+++-+||+-......    .+..++.+++..+++++|+++|+++.   +..    +++||.||.++++++|++|.+.|+
T Consensus         4 ~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~a~~~~---~~~----~~~ty~el~~~~~~la~~L~~~g~   72 (537)
T PLN02246          4 ASEEFIFRSKLPDIYI----PNHLPLHDYCFERLSEFSDRPCLIDG---ATG----RVYTYADVELLSRRVAAGLHKLGI   72 (537)
T ss_pred             ccceeEecCCCCCCCC----CCCCcHHHHHHHHHHhCCCCeEEEec---CCC----ceeeHHHHHHHHHHHHHHHHHhCC
Confidence            3556677766443211    33568999999999999999999864   321    579999999999999999999999


Q ss_pred             CCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEE
Q 005867           99 EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVC  178 (673)
Q Consensus        99 ~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~  178 (673)
                      ++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++.++++++|+++.....+......  ..+ .++.
T Consensus        73 ~~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--~~~-~~i~  149 (537)
T PLN02246         73 RQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED--DGV-TVVT  149 (537)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc--CCc-eEEE
Confidence            9999999999999999999999999999999999999999999999999999999998766654322110  111 2333


Q ss_pred             eCCCcHHHHHHHhhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhcc
Q 005867          179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ  258 (673)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~  258 (673)
                      ++...           .....+.++..... ...+.....++++++++|||||||.||+|.++|+++...+....... .
T Consensus       150 ~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~-~  216 (537)
T PLN02246        150 IDDPP-----------EGCLHFSELTQADE-NELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGE-N  216 (537)
T ss_pred             eCCCC-----------CCceeHHHHhcCCC-CCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhcc-c
Confidence            33221           11234455443321 12223345688999999999999999999999999988876543311 0


Q ss_pred             ccCCCCCCcEEEEecchHhHHHHHH-hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHh
Q 005867          259 FEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE  336 (673)
Q Consensus       259 ~~~~~~~~d~~l~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~  336 (673)
                      ....+..+|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..|.+.....   
T Consensus       217 ~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~---  293 (537)
T PLN02246        217 PNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVE---  293 (537)
T ss_pred             cccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCcccc---
Confidence            0126788999999999999999865 4567899999999887 8999999999999999999999988775421100   


Q ss_pred             hchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeec
Q 005867          337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGY  415 (673)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~Y  415 (673)
                                                        .        ..++++|.+++||+++++++.+.+.+.+ +..+++.|
T Consensus       294 ----------------------------------~--------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~Y  331 (537)
T PLN02246        294 ----------------------------------K--------YDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGY  331 (537)
T ss_pred             ----------------------------------c--------cCccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccc
Confidence                                              0        0114899999999999999999999988 67899999


Q ss_pred             CCCCCCCcccccCC----CCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-
Q 005867          416 GLTETCGPTTVCFP----DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-  490 (673)
Q Consensus       416 G~tE~~~~~~~~~~----~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-  490 (673)
                      |+||++.+++....    ......+++|+|++++++++++ ++++ .+++.|+.|||+++|+.++.||+++++.+...| 
T Consensus       332 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~  409 (537)
T PLN02246        332 GMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVD-PETG-ASLPRNQPGEICIRGPQIMKGYLNDPEATANTID  409 (537)
T ss_pred             cccccCcccccccccCCCCccccCCccccccCCcEEEEec-CCCC-CcCCCCCceEEEEECCchhccccCCchhhhhccc
Confidence            99999876544321    1122346899999999999998 4333 456677899999999999999999999998888 


Q ss_pred             cCCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHH
Q 005867          491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDT  567 (673)
Q Consensus       491 ~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~  567 (673)
                      .+|||+|||+|+++++|.+++.||.+|+|++ +|++|+|.+||+.|.+||+|.+|+|++.+++   +.++++|++.++..
T Consensus       410 ~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  488 (537)
T PLN02246        410 KDGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSE  488 (537)
T ss_pred             CCCCeeecceEEEeCCCeEEEEecccceEEE-CCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCCC
Confidence            6899999999999999999999999999997 7999999999999999999999999997654   36888888775421


Q ss_pred             HHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccc
Q 005867          568 KKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLK  647 (673)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GK  647 (673)
                                      .+..++++.+.+.                      |+.|++|+.+++++      .+|+|++||
T Consensus       489 ----------------~~~~~l~~~l~~~----------------------l~~~~~p~~i~~~~------~~P~t~~GK  524 (537)
T PLN02246        489 ----------------ITEDEIKQFVAKQ----------------------VVFYKRIHKVFFVD------SIPKAPSGK  524 (537)
T ss_pred             ----------------CCHHHHHHHHHhh----------------------CcCccccceEEEec------cCCCCCcch
Confidence                            0223444444433                      99999999998883      336999999


Q ss_pred             cchHHHHHHHHH
Q 005867          648 KKRNKLLIYYQV  659 (673)
Q Consensus       648 v~R~~l~~~~~~  659 (673)
                      ++|++|++++.+
T Consensus       525 i~r~~L~~~~~~  536 (537)
T PLN02246        525 ILRKDLRAKLAA  536 (537)
T ss_pred             hhHHHHHHHHhc
Confidence            999999988753

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.5e-62  Score=555.72  Aligned_cols=502  Identities=21%  Similarity=0.195  Sum_probs=384.3

Q ss_pred             hCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCC
Q 005867           54 KYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYD  133 (673)
Q Consensus        54 ~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~  133 (673)
                      .+|+++|+++.   +. .+..+++||+||.+++.++|++|++.|+++||+|+++++|++++++++|||+++|++++|+++
T Consensus        96 ~~~~~~Al~~~---~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Gav~v~l~~  171 (655)
T PRK03584         96 RRDDRPAIIFR---GE-DGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSP  171 (655)
T ss_pred             CCCCCeEEEEE---CC-CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEeeCC
Confidence            58999999986   33 344578999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHhccCceEEEEcchhhh---------hhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecHHHHH
Q 005867          134 TLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFL  204 (673)
Q Consensus       134 ~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (673)
                      .++.+++.++++.++++++|+++....         .+.. .....+.+..++.++.....   ...........|++++
T Consensus       172 ~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~  247 (655)
T PRK03584        172 DFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAE-LRAALPSLEHVVVVPYLGPA---AAAAALPGALLWEDFL  247 (655)
T ss_pred             CCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHH-HHhcCCCccEEEEEecCCCc---ccccccCCcccHHHHh
Confidence            999999999999999999999875321         1111 11112233344444321100   0000112234566666


Q ss_pred             hcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHH-HhhhhhhhccccCCCCCCcEEEEecchHhHHHHHH
Q 005867          205 HLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF-VSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI  283 (673)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~-~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~  283 (673)
                      ..............++++++|+|||||||.||||+++|.+++.. +......+     ++.++|+++++.++.|..+. .
T Consensus       248 ~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~-~  321 (655)
T PRK03584        248 APAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHC-----DLGPGDRFFWYTTCGWMMWN-W  321 (655)
T ss_pred             hccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhc-----CCCCCCEEEEcCCchHHhHH-H
Confidence            53222222234457799999999999999999999999987643 44444444     78889999999999987543 3


Q ss_pred             hHHHhhcCcEEEEecC-----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhh
Q 005867          284 EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (673)
Q Consensus       284 ~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (673)
                      .+.++..|++++++++     ++..+++.++++++|++.++|+++..+.+....                          
T Consensus       322 ~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--------------------------  375 (655)
T PRK03584        322 LVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLV--------------------------  375 (655)
T ss_pred             HHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCC--------------------------
Confidence            5578999999999763     789999999999999999999999877531000                          


Q ss_pred             cCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc--CCceeeecCCCCCCCcccccCCCCccccC
Q 005867          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLTETCGPTTVCFPDEMCMVG  436 (673)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~--g~~v~~~YG~tE~~~~~~~~~~~~~~~~~  436 (673)
                              + ....+        +++||.+++||+++++++.+++.+.+  ++.+.+.||+||+++.............+
T Consensus       376 --------~-~~~~~--------l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g  438 (655)
T PRK03584        376 --------P-GETHD--------LSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPLLPVYRG  438 (655)
T ss_pred             --------c-cccCC--------hhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCCCCCcCCC
Confidence                    0 00011        14899999999999999999999887  47899999999986544332222233448


Q ss_pred             CcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecC--CccccccCCchhhh--hhc---cCCccccCceEEECCCCcE
Q 005867          437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTR--ESI---IDGWFHTGDIGQILPNGVV  509 (673)
Q Consensus       437 ~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp--~~~~gy~~~~~~~~--~~~---~~g~~~TGDlg~~~~~G~l  509 (673)
                      ++|.|++|++++|+| +++...   .|+.|||+|+||  .++.||+++++.++  ..+   .+|||+|||+|++|+||++
T Consensus       439 ~~g~p~~g~~~~ivd-~~g~~~---~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l  514 (655)
T PRK03584        439 EIQCRGLGMAVEAWD-EDGRPV---VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGGV  514 (655)
T ss_pred             ccCCCcCCceeEEEC-CCCCCC---CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECCCCeE
Confidence            899999999999999 665543   468999999996  78999999997543  222   2689999999999999999


Q ss_pred             EEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhcc
Q 005867          510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL  586 (673)
Q Consensus       510 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (673)
                      +++||.||+||+ +|++|+|.+||++|.+||.|.+|+|++.+++   +.++++|+++++..                 ..
T Consensus       515 ~i~GR~dd~Ik~-~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~-----------------~~  576 (655)
T PRK03584        515 VIYGRSDATLNR-GGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVT-----------------LD  576 (655)
T ss_pred             EEEeeccCeeec-CcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCC-----------------Cc
Confidence            999999999996 8999999999999999999999999997653   48999999886421                 11


Q ss_pred             HHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 005867          587 VQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  658 (673)
Q Consensus       587 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~  658 (673)
                      +++.    ++|+++++ ++             |++|++|..|++++      .+|+|++||++|+.|++.+.
T Consensus       577 ~~~~----~~l~~~~~-~~-------------L~~~~~P~~i~~v~------~lP~t~sGKi~r~~lr~~~~  624 (655)
T PRK03584        577 DALR----ARIRTTIR-TN-------------LSPRHVPDKIIAVP------DIPRTLSGKKVELPVKKLLH  624 (655)
T ss_pred             HHHH----HHHHHHHH-hh-------------CCCCcCCCEEEECC------CCCCCCCccchHHHHHHHHc
Confidence            2222    23333333 23             99999999999983      34699999999999998874

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9e-62  Score=537.66  Aligned_cols=487  Identities=22%  Similarity=0.248  Sum_probs=396.5

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~-~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      ..+.+.|+++|+++||++|+++.    +     +.+||.||.++++++|.+|++ .|+++|++|+++++|+++++++++|
T Consensus         2 ~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la   72 (496)
T PRK06839          2 QGIAYWIEKRAYLHPDRIAIITE----E-----EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFA   72 (496)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEEC----C-----ceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            56889999999999999999863    3     689999999999999999985 6999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecH
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  200 (673)
                      |+++|++++|+++..+.+++..+++.++++++++++.....+..... . .....++.+.+                  +
T Consensus        73 ~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~-~-~~~~~~~~~~~------------------~  132 (496)
T PRK06839         73 IAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQK-V-SYVQRVISITS------------------L  132 (496)
T ss_pred             HHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhh-c-cCcceEEEecc------------------h
Confidence            99999999999999999999999999999999999876554422111 1 11122222221                  2


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHH
Q 005867          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (673)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (673)
                      .++....   .....+..++++++++|||||||.||+|.++|.++..........+     .+..++++++.+|++|.+|
T Consensus       133 ~~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g  204 (496)
T PRK06839        133 KEIEDRK---IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAI-----DLTMHDRSIVLLPLFHIGG  204 (496)
T ss_pred             HhhhccC---CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHc-----CCCCCCeEEEeeCCcchhh
Confidence            2222211   1122244678899999999999999999999999877665554444     6788999999999999999


Q ss_pred             HHH-hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhh
Q 005867          281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (673)
Q Consensus       281 l~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (673)
                      +.. .+.++..|+++++.+. ++..+++.++++++|++.++|++++.+.......                         
T Consensus       205 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------  259 (496)
T PRK06839        205 IGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFE-------------------------  259 (496)
T ss_pred             HHHHHHHHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccc-------------------------
Confidence            865 4567899999888776 9999999999999999999999999886532100                         


Q ss_pred             cCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCC-CccccCC
Q 005867          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD-EMCMVGT  437 (673)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~-~~~~~~~  437 (673)
                                          ...++++|.+++||+++++++.+.+++. |+++++.||+||++......... .....++
T Consensus       260 --------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~  318 (496)
T PRK06839        260 --------------------TTNLQSVRWFYNGGAPCPEELMREFIDR-GFLFGQGFGMTETSPTVFMLSEEDARRKVGS  318 (496)
T ss_pred             --------------------cCCCcccceEEECCCCCCHHHHHHHHHh-CCeeEeeccCCCCCcceEecccccccccCCC
Confidence                                0112489999999999999999999886 99999999999999765443322 2334578


Q ss_pred             cCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCCcEEEeecCCC
Q 005867          438 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN  517 (673)
Q Consensus       438 ~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d  517 (673)
                      +|.|+++++++|++ +++..  ++.|+.|||+|+|+.++.||+++++.+...+.+|||+|||+|+++++|.+++.||.+|
T Consensus       319 ~G~p~~~~~~~i~d-~~~~~--~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d  395 (496)
T PRK06839        319 IGKPVLFCDYELID-ENKNK--VEVGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVDEDGFVYIVGRKKE  395 (496)
T ss_pred             CcccCCCceEEEEC-CCcCC--CCCCCceEEEEECCCcchhhcCChHHHHHHHcCCCeeecceEEEcCCCcEEEeccccc
Confidence            99999999999999 66654  5667899999999999999999999999888999999999999999999999999999


Q ss_pred             eEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHH
Q 005867          518 LIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYIL  594 (673)
Q Consensus       518 ~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  594 (673)
                      +|+. +|.+|+|.+||++|.++|+|.+|+|++.+++   +.++++|+++++..                ....++++++.
T Consensus       396 ~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~----------------~~~~~l~~~~~  458 (496)
T PRK06839        396 MIIS-GGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSV----------------LIEKDVIEHCR  458 (496)
T ss_pred             eEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCC----------------CCHHHHHHHHH
Confidence            9996 8999999999999999999999999997654   36889999876421                02233444444


Q ss_pred             HHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 005867          595 SELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  659 (673)
Q Consensus       595 ~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~  659 (673)
                      +.                      |+.|++|..+++++.      +|+|++||++|++|+++.++
T Consensus       459 ~~----------------------l~~~~~P~~~~~v~~------~P~t~~GKi~r~~l~~~~~~  495 (496)
T PRK06839        459 LF----------------------LAKYKIPKEIVFLKE------LPKNATGKIQKAQLVNQLKS  495 (496)
T ss_pred             hh----------------------CcCCCCCcEEEEecc------CCCCccccccHHHHHHHhhc
Confidence            33                      999999999999843      36999999999999987653

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.9e-62  Score=541.99  Aligned_cols=508  Identities=23%  Similarity=0.280  Sum_probs=393.5

Q ss_pred             CCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHH
Q 005867           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (673)
Q Consensus        38 ~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~  117 (673)
                      .+.-.+|.++|+.+++++|+++|+++.   ++.    +.+||+||.+++.++|.+|.+.|+++||+|+++++|+++++++
T Consensus        12 ~~~~~~l~~~l~~~a~~~p~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~   84 (534)
T PRK05852         12 SDFGPRIADLVEVAATRLPEAPALVVT---ADR----IAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVA   84 (534)
T ss_pred             hhhcccHHHHHHHHHHhCCCCcEEEec---CCC----CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHH
Confidence            345678999999999999999999875   332    4799999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCce
Q 005867          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (673)
Q Consensus       118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  197 (673)
                      +|||+++|++++|+++.++.+.+.++++.++++++|++............   ......+.+......      ......
T Consensus        85 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~~~  155 (534)
T PRK05852         85 LLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTT---RWWPLTVNVGGDSGP------SGGTLS  155 (534)
T ss_pred             HHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccc---cccceeeeecccccc------cccccc
Confidence            99999999999999999999999999999999999998753321111000   000111111110000      000000


Q ss_pred             ecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHh
Q 005867          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (673)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~  277 (673)
                      ..+......  ...........++.++++|||||||.||+|.++|+++...+......+     ++..+|++++.+|++|
T Consensus       156 ~~~~~~~~~--~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~  228 (534)
T PRK05852        156 VHLDAATEP--TPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-----RLSPRDATVAVMPLYH  228 (534)
T ss_pred             cccccccCC--CccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCcceEEEecCcch
Confidence            001100000  000111122356789999999999999999999999999888877766     7889999999999999


Q ss_pred             HHHHHH-hHHHhhcCcEEEEecC---CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 005867          278 ILDRVI-EEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (673)
Q Consensus       278 ~~gl~~-~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (673)
                      .+++.. ++.+++.|+++++...   ++..+++.++++++|.++++|+++..|.+......                   
T Consensus       229 ~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------  289 (534)
T PRK05852        229 GHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEP-------------------  289 (534)
T ss_pred             hHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhccccc-------------------
Confidence            999875 5566888888887543   78899999999999999999999998865322110                   


Q ss_pred             HHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCC--
Q 005867          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--  431 (673)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~--  431 (673)
                                              .....+++|.++++|+++++++.+.+.+.++.++++.||+||++..++......  
T Consensus       290 ------------------------~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~  345 (534)
T PRK05852        290 ------------------------SGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIG  345 (534)
T ss_pred             ------------------------ccccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCccccc
Confidence                                    000114899999999999999999999999999999999999987665433210  


Q ss_pred             --ccccCCcCCC--ccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCC
Q 005867          432 --MCMVGTAGPV--SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG  507 (673)
Q Consensus       432 --~~~~~~~G~~--~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G  507 (673)
                        .....+.|.+  .++++++++| +++.  +++.|+.|||+++|+.++.||+++++.+.+.|.+|||+|||+|++|+||
T Consensus       346 ~~~~~~~~~g~~g~~~g~~~~i~d-~~g~--~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~~g~~~TGD~~~~d~dG  422 (534)
T PRK05852        346 QTENPVVSTGLVGRSTGAQIRIVG-SDGL--PLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDLGSLSAAG  422 (534)
T ss_pred             cccCcccccccCCCCCCCeEEEEC-CCCC--CCCCCCceEEEEecCcccchhcCCcccchhhhcCCCcccCceEEEeCCC
Confidence              1111233444  6999999999 6654  4556789999999999999999999999999999999999999999999


Q ss_pred             cEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHh
Q 005867          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC  584 (673)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~  584 (673)
                      ++++.||.+|+|+. +|.+|+|.+||++|.++|+|.+|+|++.+++   +.++++|+..+...                .
T Consensus       423 ~l~~~gR~~d~i~~-~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~----------------~  485 (534)
T PRK05852        423 DLSIRGRIKELINR-GGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAP----------------P  485 (534)
T ss_pred             cEEEEecchhhEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCC----------------C
Confidence            99999999999996 8999999999999999999999999998754   36888888754320                0


Q ss_pred             ccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 005867          585 SLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  659 (673)
Q Consensus       585 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~  659 (673)
                      +..++.+++++.                      ||.|++|..+++++.      +|+|++||++|++|+++|..
T Consensus       486 ~~~~i~~~~~~~----------------------l~~~~~P~~i~~v~~------iP~t~~GKi~r~~L~~~~~~  532 (534)
T PRK05852        486 TAEELVQFCRER----------------------LAAFEIPASFQEASG------LPHTAKGSLDRRAVAEQFGH  532 (534)
T ss_pred             CHHHHHHHHHHh----------------------cccccCCeEEEEhhh------cCCCCCccccHHHHHHHhcc
Confidence            223344444333                      999999999999833      36999999999999998854

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.4e-61  Score=545.05  Aligned_cols=517  Identities=25%  Similarity=0.328  Sum_probs=408.1

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      ..++.++|+++++++|+++|+++.    +     +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus        31 ~~~l~~~~~~~~~~~p~~~a~~~~----~-----~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA  101 (573)
T PRK05605         31 DTTLVDLYDNAVARFGDRPALDFF----G-----ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYA  101 (573)
T ss_pred             cCCHHHHHHHHHHHCCCCeEEEeC----C-----CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHH
Confidence            458999999999999999999874    3     4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHH--H-----------
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ--K-----------  187 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~-----------  187 (673)
                      |+++|++++|+++.++.+++.++++.++++++|+++.....+......  .....++.........  .           
T Consensus       102 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  179 (573)
T PRK05605        102 VLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRT--TPLETIVSVNMIAAMPLLQRLALRLPIPAL  179 (573)
T ss_pred             HHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhc--cccceeEeeecccccccccccccccccccc
Confidence            999999999999999999999999999999999988765544222111  1122222221100000  0           


Q ss_pred             ----HHHhhCCCceecHHHHHhcCccC---CccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhcccc
Q 005867          188 ----EMAVQTGIKPYSWDEFLHLGKVN---EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFE  260 (673)
Q Consensus       188 ----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~  260 (673)
                          ...........+|.++.......   ........++++++++|||||||.||+|.++|+++...+......+..  
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~--  257 (573)
T PRK05605        180 RKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPG--  257 (573)
T ss_pred             cccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccc--
Confidence                00000111334566665442111   012223567899999999999999999999999998877654333210  


Q ss_pred             CCCCCCcEEEEecchHhHHHHHH-hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhc
Q 005867          261 DKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR  338 (673)
Q Consensus       261 ~~~~~~d~~l~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~  338 (673)
                       -...++++++.+|++|.+|+.. .+.++..|+++++.+. ++..+++.++++++|++.++|++++.|.+......    
T Consensus       258 -~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~----  332 (573)
T PRK05605        258 -LGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERG----  332 (573)
T ss_pred             -cCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccC----
Confidence             1234789999999999999865 4557889999988876 99999999999999999999999998875322110    


Q ss_pred             hHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCC
Q 005867          339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT  418 (673)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~t  418 (673)
                                                       ..        +++||.+++||+++++++.+.|.+.++.++++.||+|
T Consensus       333 ---------------------------------~~--------~~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~T  371 (573)
T PRK05605        333 ---------------------------------VD--------LSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLT  371 (573)
T ss_pred             ---------------------------------CC--------chhccEEEECCCcCCHHHHHHHHHHhCCCeecccccc
Confidence                                             00        1389999999999999999999998899999999999


Q ss_pred             CCCCcccccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccC
Q 005867          419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (673)
Q Consensus       419 E~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TG  498 (673)
                      |+++++...........+++|.|++++.++|+| +++...+++.|+.|||+++|+.++.||+++++.+...|.+|||+||
T Consensus       372 E~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TG  450 (573)
T PRK05605        372 ETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVD-PEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRTG  450 (573)
T ss_pred             hhchhhhcCCcccCCcCCccccCCCCCEEEEEc-CCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhcccCCCcccC
Confidence            999877665544334457899999999999999 5543355667789999999999999999999999999988999999


Q ss_pred             ceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcC
Q 005867          499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNG  575 (673)
Q Consensus       499 Dlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~  575 (673)
                      |+|+++++|.+++.||.+|+|+. +|++|+|.+||+++..|+.|.+++|++.++.   +.+++++++.++..        
T Consensus       451 D~~~~~~~g~l~i~gR~dd~i~~-~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~--------  521 (573)
T PRK05605        451 DVVVMEEDGFIRIVDRIKELIIT-GGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAA--------  521 (573)
T ss_pred             CEEEEcCCCcEEEEeccccceee-CCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCC--------
Confidence            99999999999999999999996 8999999999999999999999999986543   57888888776421        


Q ss_pred             CCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 005867          576 HAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  655 (673)
Q Consensus       576 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~  655 (673)
                              .+..++++++.+.                      |+.+++|..|++++      .+|+|.+||++|++|++
T Consensus       522 --------~~~~~l~~~~~~~----------------------l~~~~~p~~i~~~~------~iP~t~~GKi~r~~L~~  565 (573)
T PRK05605        522 --------LDPEGLRAYCREH----------------------LTRYKVPRRFYHVD------ELPRDQLGKVRRREVRE  565 (573)
T ss_pred             --------CCHHHHHHHHHHh----------------------CccccCCcEEEEec------cCCCCCcccccHHHHHH
Confidence                    0223344444433                      99999999998883      23599999999999999


Q ss_pred             HHHHHHH
Q 005867          656 YYQVEID  662 (673)
Q Consensus       656 ~~~~~~~  662 (673)
                      ++.+++.
T Consensus       566 ~~~~~~~  572 (573)
T PRK05605        566 ELLEKLG  572 (573)
T ss_pred             HHHHHhc
Confidence            9877653

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.1e-61  Score=540.91  Aligned_cols=513  Identities=24%  Similarity=0.291  Sum_probs=407.4

Q ss_pred             CCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCcHhHHH
Q 005867           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVE  116 (673)
Q Consensus        38 ~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~-gv~~gd~V~i~~~~~~e~~~  116 (673)
                      +.+..|+.++|.++++++|+++|+++.   +      +++||+||.+++.++|..|.+. |+++||+|+++++|++++++
T Consensus         6 ~~~~~tl~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~   76 (546)
T PRK08314          6 TLPETSLFHNLEVSARRYPDKTAIVFY---G------RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVI   76 (546)
T ss_pred             CCCCCCHHHHHHHHHHHcCCCcceeec---C------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHH
Confidence            345678999999999999999999875   3      4799999999999999999999 99999999999999999999


Q ss_pred             HHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcH--HHHH------
Q 005867          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA--EQKE------  188 (673)
Q Consensus       117 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~------  188 (673)
                      ++|||+++|++++|+++..+.+++.++++.++++++++++.....+.......  ....++.......  ....      
T Consensus        77 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  154 (546)
T PRK08314         77 AYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL--RLRHVIVAQYSDYLPAEPEIAVPAW  154 (546)
T ss_pred             HHHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc--CcceEEEecchhhcccccccCcccc
Confidence            99999999999999999999999999999999999999987766543321111  1222222110000  0000      


Q ss_pred             ------HHhhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCC
Q 005867          189 ------MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK  262 (673)
Q Consensus       189 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~  262 (673)
                            ........+..|+++.....  ........++++++++|||||||.||+|.++|++++..+......+     +
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~  227 (546)
T PRK08314        155 LRAEPPLQALAPGGVVAWKEALAAGL--APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWS-----N  227 (546)
T ss_pred             cccccccccccccccccHHHHhcccC--CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----C
Confidence                  00000113345666554321  1223345788999999999999999999999999999888776666     7


Q ss_pred             CCCCcEEEEecchHhHHHHHH-hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchH
Q 005867          263 MTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL  340 (673)
Q Consensus       263 ~~~~d~~l~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~  340 (673)
                      +..+|++++.+|++|.+|+.. ++.++..|+++++.+. ++..+...++++++|++.++|+++..++....         
T Consensus       228 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~---------  298 (546)
T PRK08314        228 STPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPG---------  298 (546)
T ss_pred             CCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCC---------
Confidence            788999999999999999865 5678999999999887 89999999999999999999999887654210         


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCC
Q 005867          341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET  420 (673)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~  420 (673)
                                                  .+..++        +++|.+++||+++++++.+++.+.++.++++.||+||+
T Consensus       299 ----------------------------~~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~  342 (546)
T PRK08314        299 ----------------------------LAERDL--------SSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTET  342 (546)
T ss_pred             ----------------------------ccccCc--------hhhheeeeccccCCHHHHHHHHHHcCCcEEeccccccc
Confidence                                        001111        37999999999999999999999899999999999999


Q ss_pred             CCcccccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhcc--C--Cccc
Q 005867          421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--D--GWFH  496 (673)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~--~--g~~~  496 (673)
                      +........... ..+++|.|+++++++++| ++.+ .+++.|+.|||+++|+.++.||+++++.+...|.  +  +||+
T Consensus       343 ~~~~~~~~~~~~-~~~~~G~~~~g~~~~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~  419 (546)
T PRK08314        343 MAQTHSNPPDRP-KLQCLGIPTFGVDARVID-PETL-EELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFR  419 (546)
T ss_pred             ccceecCCCcCC-CCCccCcccCCeEEEEEe-CCCC-cCCCCCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEe
Confidence            887665443332 337899999999999999 4332 3455667999999999999999999999888873  3  4999


Q ss_pred             cCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHH
Q 005867          497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYS  573 (673)
Q Consensus       497 TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~  573 (673)
                      |||+|+++++|.+++.||.||+|++ +|.+|+|.+||++|.++|+|.+++|++.++.   +.++++|+++++...     
T Consensus       420 TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~-----  493 (546)
T PRK08314        420 TGDLGRMDEEGYFFITDRLKRMINA-SGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARG-----  493 (546)
T ss_pred             cCCEEEEcCCCcEEEEecchhhEEe-CCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCC-----
Confidence            9999999999999999999999997 7999999999999999999999999997654   478999998764210     


Q ss_pred             cCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHH
Q 005867          574 NGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKL  653 (673)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l  653 (673)
                           .    ....++.+++++.                      |+.|++|+.+++++      .+|+|++||++|++|
T Consensus       494 -----~----~~~~~l~~~~~~~----------------------l~~~~~P~~~~~v~------~iP~t~~GKv~r~~L  536 (546)
T PRK08314        494 -----K----TTEEEIIAWAREH----------------------MAAYKYPRIVEFVD------SLPKSGSGKILWRQL  536 (546)
T ss_pred             -----C----CCHHHHHHHHHHh----------------------cccCCCCcEEEEec------CCCCCCccceeHHHH
Confidence                 0    0123333333332                      99999999999983      236999999999999


Q ss_pred             HHHHHH
Q 005867          654 LIYYQV  659 (673)
Q Consensus       654 ~~~~~~  659 (673)
                      ++....
T Consensus       537 ~~~~~~  542 (546)
T PRK08314        537 QEQEKA  542 (546)
T ss_pred             HHHHhh
Confidence            876543

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.3e-61  Score=537.82  Aligned_cols=507  Identities=28%  Similarity=0.348  Sum_probs=421.4

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (673)
Q Consensus        40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l  119 (673)
                      ...++.++|.++++.+|+++|+.+.   +      +.+||+||++++.++|+.|.+.|+++|++|+++++|+++++++++
T Consensus         4 ~~~~l~~~l~~~~~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~l   74 (521)
T PRK06187          4 YPLTIGRILRHGARKHPDKEAVYFD---G------RRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYF   74 (521)
T ss_pred             ccCCHHHHHHHHHHHCCCceEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4579999999999999999999875   4      369999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceec
Q 005867          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (673)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  199 (673)
                      ||+++|++++|+++.++.+.+..+++.+++++++++......+.+.. ...+....++..++....      ........
T Consensus        75 a~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~  147 (521)
T PRK06187         75 AVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAIL-PQLPTVRTVIVEGDGPAA------PLAPEVGE  147 (521)
T ss_pred             HHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHh-hccCCccEEEEecCcccc------cccccccc
Confidence            99999999999999999999999999999999999988766553322 223334455554443210      11123455


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHH
Q 005867          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (673)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~  279 (673)
                      +.+++...... .......++++++++|||||||.||+|.++|.++..........+     ++..++++++.+|++|.+
T Consensus       148 ~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~  221 (521)
T PRK06187        148 YEELLAAASDT-FDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL-----KLSRDDVYLVIVPMFHVH  221 (521)
T ss_pred             HHHHhhcCCcc-CCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhh-----CCCCCCEEEEeCCchHHh
Confidence            66665543222 223345678899999999999999999999999999888877766     788999999999999999


Q ss_pred             HHHHhHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhh
Q 005867          280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (673)
Q Consensus       280 gl~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (673)
                      ++...+.++..|+++++++. ++..+++.++++++|.++++|+++..+.+......                        
T Consensus       222 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~------------------------  277 (521)
T PRK06187        222 AWGLPYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYF------------------------  277 (521)
T ss_pred             hHHHHHHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCc------------------------
Confidence            98877779999999999887 99999999999999999999999998865322100                        


Q ss_pred             cCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCc-----c
Q 005867          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-----C  433 (673)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~-----~  433 (673)
                                           ..++++|.+++||+++++++.+.|.+.+++++++.||+||+++++........     .
T Consensus       278 ---------------------~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~  336 (521)
T PRK06187        278 ---------------------VDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWT  336 (521)
T ss_pred             ---------------------cCcchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCcccccccccc
Confidence                                 11148999999999999999999999889999999999999887666544332     2


Q ss_pred             ccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCCcEEEee
Q 005867          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID  513 (673)
Q Consensus       434 ~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~G  513 (673)
                      ..+++|.|++++.++|++ +++...+.+.|+.|||+++|+.++.||+++++.+...|.+|||+|||+|+++++|.+++.|
T Consensus       337 ~~~~~G~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~tGD~~~~~~~g~~~~~G  415 (521)
T PRK06187        337 KRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDEDGYLYITD  415 (521)
T ss_pred             cCCccccccCCeEEEEEC-CCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhhCCceeccceEEEcCCCCEEEee
Confidence            457999999999999999 6666555544789999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHH
Q 005867          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ  590 (673)
Q Consensus       514 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (673)
                      |.+|+|++ +|.+++|.+||++|.++++|.+|+|++.+++   +.+++++++.++..                .+..+++
T Consensus       416 R~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----------------~~~~~l~  478 (521)
T PRK06187        416 RIKDVIIS-GGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGAT----------------LDAKELR  478 (521)
T ss_pred             cccceEEc-CCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCC----------------CCHHHHH
Confidence            99999997 8999999999999999999999999986643   47888888765421                0334455


Q ss_pred             HHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 005867          591 NYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  659 (673)
Q Consensus       591 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~  659 (673)
                      +++.+.                      |+++.+|..+++++      .+|+|++||++|+.|+++|++
T Consensus       479 ~~l~~~----------------------l~~~~~p~~i~~v~------~~P~t~~gK~~r~~l~~~~~~  519 (521)
T PRK06187        479 AFLRGR----------------------LAKFKLPKRIAFVD------ELPRTSVGKILKRVLREQYAE  519 (521)
T ss_pred             HHHHHh----------------------ccCCCCceEEEEcc------CCCCCCCCCeeHHHHHHHHhc
Confidence            555433                      99999999999983      336999999999999999875

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=2.3e-61  Score=548.23  Aligned_cols=502  Identities=20%  Similarity=0.170  Sum_probs=377.7

Q ss_pred             CCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCC
Q 005867           55 YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDT  134 (673)
Q Consensus        55 ~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~  134 (673)
                      .++++|+++.   + ..+..+++||+||.+++.++|++|++.|+++||+|+++++|++++++++|||+++|++++|+++.
T Consensus        97 ~~~~~a~~~~---~-~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~~~  172 (652)
T TIGR01217        97 AGTEPALLYV---D-ETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPD  172 (652)
T ss_pred             CCCCeEEEEE---C-CCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecCCC
Confidence            5789999886   3 33445789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHhccCceEEEEcchhh---------hhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecHHHHHh
Q 005867          135 LGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH  205 (673)
Q Consensus       135 ~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (673)
                      ++.+++.++++.++++++|+++...         ..+... ....+.+..++.+.........  .........|+++..
T Consensus       173 ~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~  249 (652)
T TIGR01217       173 FGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEV-RKELPTLRAVVHIPYLGPRETE--APKIDGALDLEDFTA  249 (652)
T ss_pred             CCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHH-HhcCCCccEEEEEeCCCCcccc--cccccCcccHHHHHh
Confidence            9999999999999999999987532         111111 1122333444444321100000  000012345777664


Q ss_pred             cCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHH-HhhhhhhhccccCCCCCCcEEEEecchHhHHHHHHh
Q 005867          206 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF-VSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE  284 (673)
Q Consensus       206 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~-~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~~  284 (673)
                      .............++++++|+|||||||.||||+++|.+++.. .......+     ++.++|+++++.|+.|..+ ..+
T Consensus       250 ~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~-~~~  323 (652)
T TIGR01217       250 AAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHC-----DLGPGDRLFYYTTTGWMMW-NWL  323 (652)
T ss_pred             cccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhcc-----CCCCCcEEEEeCCcchhhh-HHH
Confidence            4211122223456789999999999999999999999986543 33333334     6888999999999999754 234


Q ss_pred             HHHhhcCcEEEEecC-----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhc
Q 005867          285 EYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG  359 (673)
Q Consensus       285 ~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (673)
                      +.++..|++++++++     ++..+++.++++++|++.++|.++..+.....                            
T Consensus       324 ~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~----------------------------  375 (652)
T TIGR01217       324 VSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGV----------------------------  375 (652)
T ss_pred             HHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCC----------------------------
Confidence            578999999999863     67899999999999999887777655432100                            


Q ss_pred             CCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcC--CceeeecCCCCCCCcccccCCCCccccCC
Q 005867          360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC--AFLVQGYGLTETCGPTTVCFPDEMCMVGT  437 (673)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g--~~v~~~YG~tE~~~~~~~~~~~~~~~~~~  437 (673)
                            .+ ....+        +++||.+++||+++++++.+++.+.++  ..+.+.||+||+++.............++
T Consensus       376 ------~~-~~~~~--------l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~  440 (652)
T TIGR01217       376 ------HP-ARTHD--------LSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPVHIGE  440 (652)
T ss_pred             ------Cc-cccCC--------hhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCCCCCcCCc
Confidence                  00 00111        249999999999999999999988875  45778999999754333222222233478


Q ss_pred             cCCCccceeEEEeecCCCCCCCCCCCCCceEEEecC--CccccccCCchhhh--hhc---cCCccccCceEEECCCCcEE
Q 005867          438 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTR--ESI---IDGWFHTGDIGQILPNGVVK  510 (673)
Q Consensus       438 ~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp--~~~~gy~~~~~~~~--~~~---~~g~~~TGDlg~~~~~G~l~  510 (673)
                      +|.|.+|++++++| +++...   .|+.|||+++||  .++.|||++++.+.  ..+   .+|||+|||+|++|+||+|+
T Consensus       441 ~g~p~~g~~v~ivd-~~g~~~---~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~dG~l~  516 (652)
T TIGR01217       441 IQAPGLGTAVQSWD-PEGKPV---TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGIV  516 (652)
T ss_pred             cCCCcCCCceEEEC-CCCCCC---CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECCCCcEE
Confidence            89999999999999 666543   368999999996  58899999998654  222   26899999999999999999


Q ss_pred             EeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccH
Q 005867          511 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLV  587 (673)
Q Consensus       511 ~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (673)
                      ++||.||+|++ +|++|+|.+||++|.+||+|.||+|++.+++   +.++|||+++++..                 ..+
T Consensus       517 i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~-----------------~~~  578 (652)
T TIGR01217       517 IHGRSDSTLNP-QGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGAT-----------------LDD  578 (652)
T ss_pred             EEecccCeEec-CCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCC-----------------CCH
Confidence            99999999996 8999999999999999999999999997764   48999999886431                 112


Q ss_pred             HHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 005867          588 QLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  658 (673)
Q Consensus       588 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~  658 (673)
                      ++    .++|.++++ ++             |++|++|+.|++++      .+|+|++||++|+.|++.+.
T Consensus       579 ~~----~~~l~~~~~-~~-------------l~~~~~P~~i~~v~------~lP~T~sGKi~r~~Lr~~~~  625 (652)
T TIGR01217       579 AL----LDRIKRTIR-AG-------------LSPRHVPDEIIEVP------GIPHTLTGKRVEVAVKRVLQ  625 (652)
T ss_pred             HH----HHHHHHHHH-hh-------------CCCCcCCCEEEECC------CCCCCCCccChHHHHHHHHc
Confidence            22    233333333 23             99999999999983      34699999999999998873

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.3e-61  Score=538.31  Aligned_cols=490  Identities=20%  Similarity=0.183  Sum_probs=392.8

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHH
Q 005867           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (673)
Q Consensus        42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~  121 (673)
                      .++.++|..+++++||++|+++.   +      +.+||.||.+++.++|.+|.+.|+++||+|+++++|++++++++|||
T Consensus        43 ~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~  113 (537)
T PRK13382         43 MGPTSGFAIAAQRCPDRPGLIDE---L------GTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAA  113 (537)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEeC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHH
Confidence            57999999999999999999864   3      47999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecHH
Q 005867          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (673)
Q Consensus       122 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  201 (673)
                      +++|++++|+++.++.+++.++++.++++++|++......+..... .......++..++..            ....++
T Consensus       114 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------~~~~~~  180 (537)
T PRK13382        114 NRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALA-DCPQATRIVAWTDED------------HDLTVE  180 (537)
T ss_pred             HHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHh-hccccceEEEecCCc------------ccccHH
Confidence            9999999999999999999999999999999999876554422211 111222223222211            012344


Q ss_pred             HHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHH
Q 005867          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (673)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl  281 (673)
                      .+.......   .....+++.++++|||||||.||+|.++|+++..........+     .+..+++++..+|++|.+|+
T Consensus       181 ~~~~~~~~~---~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~g~  252 (537)
T PRK13382        181 VLIAAHAGQ---RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRT-----PWRAEEPTVIVAPMFHAWGF  252 (537)
T ss_pred             HHhhccCcC---CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhh-----CCCCCCeEEEecChHhhhHH
Confidence            443322111   1123467889999999999999999999998888777666555     56788999999999999998


Q ss_pred             HHhHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcC
Q 005867          282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (673)
Q Consensus       282 ~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (673)
                      ...+.++..|+++++... ++..+++.++++++|++.++|+++..|.+......                          
T Consensus       253 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--------------------------  306 (537)
T PRK13382        253 SQLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVR--------------------------  306 (537)
T ss_pred             HHHHHHHhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhc--------------------------
Confidence            777888999999888766 89999999999999999999999998765211100                          


Q ss_pred             CcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCccccCCcCC
Q 005867          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP  440 (673)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~  440 (673)
                               +..        .++++|.+++||+++++++.+.|.+.++.++++.||+||++.++...........+++|.
T Consensus       307 ---------~~~--------~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~  369 (537)
T PRK13382        307 ---------NRY--------SGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADLRAAPDTAGR  369 (537)
T ss_pred             ---------ccC--------CccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHhccCCCCccc
Confidence                     000        113899999999999999999999999999999999999998766544332334578999


Q ss_pred             CccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCCcEEEeecCCCeEE
Q 005867          441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK  520 (673)
Q Consensus       441 ~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~  520 (673)
                      |+++++++++| +++.  +++.|+.|||+++|+.++.||+  ++.+. .+.+|||+|||+++++++|++++.||.||+|+
T Consensus       370 p~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~~~~gY~--~~~~~-~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik  443 (537)
T PRK13382        370 PAEGTEIRILD-QDFR--EVPTGEVGTIFVRNDTQFDGYT--SGSTK-DFHDGFMASGDVGYLDENGRLFVVGRDDEMIV  443 (537)
T ss_pred             cCcCcEEEEEC-CCCC--CCCCCCeeEEEEEcCCcccCcc--ccchh-hccCCCEeeCceEEEeCCCcEEEeccccceeE
Confidence            99999999999 6554  4556789999999999999998  44443 45689999999999999999999999999999


Q ss_pred             cCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHH
Q 005867          521 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL  597 (673)
Q Consensus       521 ~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  597 (673)
                      . +|++|+|.+||++|.+||+|.+|+|++.++.   +.++++|++.++..                ...+++++++.+. 
T Consensus       444 ~-~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~----------------~~~~~l~~~l~~~-  505 (537)
T PRK13382        444 S-GGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGAS----------------ATPETLKQHVRDN-  505 (537)
T ss_pred             E-CCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCC----------------CCHHHHHHHHHHh-
Confidence            6 8999999999999999999999999997754   36889998875421                0223344444433 


Q ss_pred             HHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 005867          598 KNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  655 (673)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~  655 (673)
                                           |+.|++|..+.+++      .+|+|++||++|++|++
T Consensus       506 ---------------------l~~~~~P~~i~~v~------~lP~t~~gK~~r~~L~~  536 (537)
T PRK13382        506 ---------------------LANYKVPRDIVVLD------ELPRGATGKILRRELQA  536 (537)
T ss_pred             ---------------------ccCCCCCcEEEEec------cCCCCCCCCCcHHhhCC
Confidence                                 99999999999983      23599999999999864

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.4e-61  Score=541.90  Aligned_cols=523  Identities=20%  Similarity=0.258  Sum_probs=407.4

Q ss_pred             CCCCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHhH
Q 005867           36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQW  114 (673)
Q Consensus        36 ~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~-~gv~~gd~V~i~~~~~~e~  114 (673)
                      ++.....|+.++|+.+|..+|+++|+++.   +.   ..+.+||.||.+++.++|.+|.+ .|+++||+|+++++|++++
T Consensus         4 ~~~~~~~~~~~~l~~~a~~~~~~~a~~~~---~~---~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~   77 (576)
T PRK05620          4 TMQDVPLSLTRILEYGSTVHGDTTVTTWG---GA---EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEH   77 (576)
T ss_pred             hhhcCCCcHHHHHHHHHHhCCCceEEEEc---CC---ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHH
Confidence            34444578999999999999999999874   22   23789999999999999999986 7999999999999999999


Q ss_pred             HHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCC
Q 005867          115 VEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG  194 (673)
Q Consensus       115 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  194 (673)
                      +++++||+++|++++|+++..+.+++.++++.++++++|+++.....+..... .......++..+..............
T Consensus        78 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~  156 (576)
T PRK05620         78 LEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILK-ECPCVRAVVFIGPSDADSAAAHMPEG  156 (576)
T ss_pred             HHHHHHHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHh-hCccccEEEEecCcccccchhccccc
Confidence            99999999999999999999999999999999999999999876655433221 22333444444322111000001112


Q ss_pred             CceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhh--hhhccccCCCCCCcEEEEe
Q 005867          195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD--LFLDQFEDKMTVDDVYLSF  272 (673)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~--~~~~~~~~~~~~~d~~l~~  272 (673)
                      ....+|.++..... .........++++++++|||||||.||+|.++|+++........  ..+     .+..++++++.
T Consensus       157 ~~~~~~~~l~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~-----~~~~~~~~l~~  230 (576)
T PRK05620        157 IKVYSYEALLDGRS-TVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSL-----AVTHGESFLCC  230 (576)
T ss_pred             cccccHHHHhhcCC-CcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhc-----CCCCCCeEEEe
Confidence            23456777775432 22222345778999999999999999999999999865544321  223     67889999999


Q ss_pred             cchHhHHHHHHhHHHhhcCcEEEEecC--CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 005867          273 LPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK  350 (673)
Q Consensus       273 ~p~~~~~gl~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (673)
                      +|++|.+++...+.++..|+++++...  ++..+++.++++++|.++++|+++..+.........               
T Consensus       231 ~pl~h~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---------------  295 (576)
T PRK05620        231 VPIYHVLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPP---------------  295 (576)
T ss_pred             CChHHhhhhHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCc---------------
Confidence            999999998877888999999988764  899999999999999999999999887653211100               


Q ss_pred             HHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCC
Q 005867          351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD  430 (673)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~  430 (673)
                                                    ...++|.+++||+++++.+.+.|.+.+|+++++.||+||++..+......
T Consensus       296 ------------------------------~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~  345 (576)
T PRK05620        296 ------------------------------ERMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPP  345 (576)
T ss_pred             ------------------------------ccCceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccC
Confidence                                          00379999999999999999999998999999999999998765543321


Q ss_pred             C-------ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhh----------------h
Q 005867          431 E-------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT----------------R  487 (673)
Q Consensus       431 ~-------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~----------------~  487 (673)
                      .       .....++|++.+++++++++ + +...+...+..|||+++|++++.||+++++.+                .
T Consensus       346 ~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~-g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~  423 (576)
T PRK05620        346 SGVSGEARWAYRVSQGRFPASLEYRIVN-D-GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDAN  423 (576)
T ss_pred             CccccccccccccccCCcCCceeEEEec-C-CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhh
Confidence            1       01224789999999999998 4 44444444578999999999999999999877                2


Q ss_pred             hhc-cCCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecC
Q 005867          488 ESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC  563 (673)
Q Consensus       488 ~~~-~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~  563 (673)
                      ..| .+|||+|||+|++++||.+++.||.+|+|+. +|.+|+|.+||++|.+||.|.+|+|++.+++   +.+++++++.
T Consensus       424 ~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~-~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~  502 (576)
T PRK05620        424 DRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRS-GGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLA  502 (576)
T ss_pred             cccccCCcEecCceEEEcCCceEEEEechhhhhhc-CCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEec
Confidence            233 4789999999999999999999999999995 8999999999999999999999999997764   3678888876


Q ss_pred             hhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccc
Q 005867          564 EEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVT  643 (673)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t  643 (673)
                      ++....        .     ....++++++.+.                      ||+|++|+.|++++.      +|+|
T Consensus       503 ~~~~~~--------~-----~~~~~l~~~l~~~----------------------L~~~~~P~~i~~v~~------~P~t  541 (576)
T PRK05620        503 PGIEPT--------R-----ETAERLRDQLRDR----------------------LPNWMLPEYWTFVDE------IDKT  541 (576)
T ss_pred             CCCCcc--------c-----ccHHHHHHHHHhh----------------------CccccCCeEEEEecc------CCCC
Confidence            642100        0     0123334444333                      999999999999832      3699


Q ss_pred             cccccchHHHHHHHHHH
Q 005867          644 ATLKKKRNKLLIYYQVE  660 (673)
Q Consensus       644 ~~GKv~R~~l~~~~~~~  660 (673)
                      ++||++|++|++++++.
T Consensus       542 ~~GKv~r~~L~~~~~~~  558 (576)
T PRK05620        542 SVGKFDKKDLRQHLADG  558 (576)
T ss_pred             CcccCcHHHHHHHHhcC
Confidence            99999999999999864

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=4.3e-61  Score=548.18  Aligned_cols=520  Identities=19%  Similarity=0.161  Sum_probs=388.9

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeecccCC--CCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGK--FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (673)
Q Consensus        42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~--~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l  119 (673)
                      |-...+|++++.++|+++|+++.   +..  ++.++++||+||.+++.++|++|++.|+++||+|+++++|++++++++|
T Consensus       175 n~~~~~l~~~~~~~pd~~Ai~~~---~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~L  251 (728)
T PLN03052        175 NVAECCLTPKPSKTDDSIAIIWR---DEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYL  251 (728)
T ss_pred             EHHHHHHHHHhccCCCCeEEEEE---CCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            44456777776779999999986   432  2346789999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhh-----hcccccccccceEEEEeCCCcHHHHHHHhhCC
Q 005867          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL-----LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG  194 (673)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  194 (673)
                      ||+++|++++|+++.++++++.++++.++++++|+++.....-     .........  ..++.+.......   .....
T Consensus       252 A~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~--~~~iv~~~~~~~~---~~~~~  326 (728)
T PLN03052        252 AIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA--PKAIVLPADGKSV---RVKLR  326 (728)
T ss_pred             HHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC--CcEEEEeCCCCcc---ccccc
Confidence            9999999999999999999999999999999999987542100     000000001  1122222110000   00001


Q ss_pred             CceecHHHHHhcCcc----CCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEE
Q 005867          195 IKPYSWDEFLHLGKV----NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL  270 (673)
Q Consensus       195 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l  270 (673)
                      ....+|++++.....    .........++++++|+|||||||.||||+++|.+++..+......+     ++.++|+++
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~-----~l~~~d~~~  401 (728)
T PLN03052        327 EGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHL-----DIRKGDIVC  401 (728)
T ss_pred             cCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhc-----CCCCCcEEE
Confidence            123467776654211    11111223568999999999999999999999999877665544444     678899999


Q ss_pred             EecchHhHHHHHHhHHHhhcCcEEEEecC--CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 005867          271 SFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (673)
Q Consensus       271 ~~~p~~~~~gl~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (673)
                      ++.|+.|.++....+.+|..|++++++++  ++..+++.++++++|++.++|+++..|.+...                 
T Consensus       402 ~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~-----------------  464 (728)
T PLN03052        402 WPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNC-----------------  464 (728)
T ss_pred             ECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCC-----------------
Confidence            99999999998777788999999999876  56789999999999999999999988754210                 


Q ss_pred             HHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcC-CceeeecCCCCCCCccccc
Q 005867          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVC  427 (673)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g-~~v~~~YG~tE~~~~~~~~  427 (673)
                                          .+.+++        ++||.++++|++++++...++.+.++ .++.+.||+||+++.+...
T Consensus       465 --------------------~~~~dl--------ssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~  516 (728)
T PLN03052        465 --------------------MAGLDW--------SSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTG  516 (728)
T ss_pred             --------------------cccCCh--------hheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccC
Confidence                                011122        48999999999999999888887766 5899999999998754433


Q ss_pred             CCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCC--ccccccCCchhhhhhcc-----CC--ccccC
Q 005867          428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT--LFSGYYKNPDLTRESII-----DG--WFHTG  498 (673)
Q Consensus       428 ~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~--~~~gy~~~~~~~~~~~~-----~g--~~~TG  498 (673)
                      ........+++|.|++|++++|+| +++..++.+..+.|||+++++.  ...+|+++.. ...-|.     .|  ||+||
T Consensus       517 ~~~~~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~~-~~~yf~~~p~~~g~~~~~tG  594 (728)
T PLN03052        517 SLLQPQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLMFGASSTLLNADH-YKVYFKGMPVFNGKILRRHG  594 (728)
T ss_pred             CCCCCCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCCCCCCccccCchh-hhhhhhcCCCCCCCEEEecC
Confidence            222233447899999999999999 7666554432246999998653  3346666532 222221     23  89999


Q ss_pred             ceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHH-hcCcCcceEEEEecCCC----CeEEEEEecC--hhHHHHHH
Q 005867          499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY-CVAPIIEDIWVYGDSLK----SMLVAVVVPC--EEDTKKWA  571 (673)
Q Consensus       499 Dlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l-~~~p~V~~~~v~~~~~~----~~~~a~v~~~--~~~~~~~~  571 (673)
                      |+|++|++|+++++||.||+||+ +|++|.+.+||++| ..||.|.||+|++.+++    +.+++||+++  ++..    
T Consensus       595 Dl~~~d~dG~l~i~GR~Dd~I~~-~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~~----  669 (728)
T PLN03052        595 DIFERTSGGYYRAHGRADDTMNL-GGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSN----  669 (728)
T ss_pred             ceEEECCCCeEEEEecCCCEEee-CCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCCC----
Confidence            99999999999999999999997 89999999999999 58999999999997653    4799999987  3210    


Q ss_pred             HHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchH
Q 005867          572 YSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRN  651 (673)
Q Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~  651 (673)
                                  .+.+++++.+++.|++     +             |+++..|..|++++      .+|+|.+||++|+
T Consensus       670 ------------~~~~~L~~~i~~~i~~-----~-------------l~~~~~p~~i~~v~------~lP~T~sGKi~Rr  713 (728)
T PLN03052        670 ------------PDLNELKKIFNSAIQK-----K-------------LNPLFKVSAVVIVP------SFPRTASNKVMRR  713 (728)
T ss_pred             ------------CCHHHHHHHHHHHHHh-----h-------------cCCccCCCEEEEcC------CCCCCCchHHHHH
Confidence                        0224455555444432     2             88999999998883      3469999999999


Q ss_pred             HHHHHHHHHHH
Q 005867          652 KLLIYYQVEID  662 (673)
Q Consensus       652 ~l~~~~~~~~~  662 (673)
                      .|++.+.+...
T Consensus       714 ~Lr~~~~~~~~  724 (728)
T PLN03052        714 VLRQQLAQELS  724 (728)
T ss_pred             HHHHHHHhhhh
Confidence            99998877653

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.4e-61  Score=535.41  Aligned_cols=502  Identities=24%  Similarity=0.326  Sum_probs=411.1

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHH
Q 005867           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (673)
Q Consensus        39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~  118 (673)
                      .++.++.++|...++.+|+++|+++.    +     +++||+||.+++.++|..|.+.|+++||+|+++++|++++++++
T Consensus         2 ~~~~~i~~~l~~~~~~~~~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~   72 (513)
T PRK07656          2 NEWMTLPELLARAARRFGDKEAYVFG----D-----QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAA   72 (513)
T ss_pred             CccccHHHHHHHHHHHCCCCeEEEeC----C-----CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence            45689999999999999999999874    3     57999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCcee
Q 005867          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (673)
Q Consensus       119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  198 (673)
                      +||+++|++++|+++..+.+.+..+++.++++++++++.......... ........++........      .......
T Consensus        73 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~  145 (513)
T PRK07656         73 LGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSAT-TRLPALEHVVICETEEDD------PHTEKMK  145 (513)
T ss_pred             HHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHH-hccCCccEEEEEcCcccc------cCccccc
Confidence            999999999999999999999999999999999999987655443221 122333344333322110      0011234


Q ss_pred             cHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhH
Q 005867          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (673)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~  278 (673)
                      +|.++...... ........++++++++|||||||.||+|.++|.++...+......+     ++..++++++.+|++|.
T Consensus       146 ~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  219 (513)
T PRK07656        146 TFTDFLAAGDP-AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-----GLTEGDRYLAANPFFHV  219 (513)
T ss_pred             cHHHHHhcCCC-CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh-----CCCCCCeEEEccchHHH
Confidence            66776654322 2233445788999999999999999999999999998888877666     78899999999999999


Q ss_pred             HHHHH-hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh
Q 005867          279 LDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (673)
Q Consensus       279 ~gl~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (673)
                      +++.. ++.++..|+++++.+. ++..+++.++++++|+++++|.++..+.+......                      
T Consensus       220 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~----------------------  277 (513)
T PRK07656        220 FGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSA----------------------  277 (513)
T ss_pred             HHHHHHHHHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCC----------------------
Confidence            99875 5677999999988766 89999999999999999999999998865321110                      


Q ss_pred             hhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCC-ceeeecCCCCCCCcccccCCCCccc-
Q 005867          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFPDEMCM-  434 (673)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~-~v~~~YG~tE~~~~~~~~~~~~~~~-  434 (673)
                                     .        ..+++|.+++||+++++++.+.|.+.++. ++++.||+||+++++..+....... 
T Consensus       278 ---------------~--------~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~  334 (513)
T PRK07656        278 ---------------E--------DLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKT  334 (513)
T ss_pred             ---------------C--------CccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccc
Confidence                           0        11489999999999999999999999998 9999999999988877666543222 


Q ss_pred             -cCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhcc-CCccccCceEEECCCCcEEEe
Q 005867          435 -VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKII  512 (673)
Q Consensus       435 -~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~-~g~~~TGDlg~~~~~G~l~~~  512 (673)
                       .+++|.|++++++++++ +++.  +++.|+.|||+++|+.++.||++++..+...+. +|||+|||+|+++++|.++++
T Consensus       335 ~~~~vG~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~  411 (513)
T PRK07656        335 VAGTIGTAIAGVENKIVN-ELGE--EVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIV  411 (513)
T ss_pred             cCCCccccCCCcEEEEEC-CCCC--CCCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEE
Confidence             57899999999999999 5554  455668999999999999999999998888885 899999999999999999999


Q ss_pred             ecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHH
Q 005867          513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL  589 (673)
Q Consensus       513 GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (673)
                      ||.+|+|++ +|.+++|.+||++|.++++|.+++|++.+++   +.+.++|+.+....                .+..++
T Consensus       412 GR~~d~i~~-~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~----------------~~~~~l  474 (513)
T PRK07656        412 DRKKDMFIV-GGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAE----------------LTEEEL  474 (513)
T ss_pred             ecccceEEe-CCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCCC----------------CCHHHH
Confidence            999999997 8999999999999999999999999986644   46788888764210                022334


Q ss_pred             HHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 005867          590 QNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  655 (673)
Q Consensus       590 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~  655 (673)
                      .+++.+.                      ||.+++|..+++++      .+|+|++||++|++|++
T Consensus       475 ~~~~~~~----------------------l~~~~~p~~i~~v~------~iP~t~~gK~~r~~l~~  512 (513)
T PRK07656        475 IAYCREH----------------------LAKYKVPRSIEFLD------ELPKNATGKVLKRALRE  512 (513)
T ss_pred             HHHHHhh----------------------cccccCCCEEEEec------CCCCCCccceeHHHHhc
Confidence            4444333                      99999999999983      34699999999999875

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=7.1e-61  Score=534.71  Aligned_cols=501  Identities=21%  Similarity=0.222  Sum_probs=402.1

Q ss_pred             CCCCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHH
Q 005867           36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV  115 (673)
Q Consensus        36 ~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~  115 (673)
                      ..|...+++.++|+++|+++||++|++..   +      +++||.||.+++.++|..|.+.|+++|++|+++++|+++++
T Consensus        15 ~~~~~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~   85 (542)
T PRK06155         15 PLPPSERTLPAMLARQAERYPDRPLLVFG---G------TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFL   85 (542)
T ss_pred             cCCccccCHHHHHHHHHHHCCCCeEEEeC---C------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHH
Confidence            45556788999999999999999999864   3      47999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCC
Q 005867          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (673)
Q Consensus       116 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  195 (673)
                      +++|||+++|++++|+++.++.+++..+++.+++++++++......+...... ......++.++.....      ... 
T Consensus        86 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~-  157 (542)
T PRK06155         86 DVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPG-DLPLPAVWLLDAPASV------SVP-  157 (542)
T ss_pred             HHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhccc-ccCcceEEEecCcccc------ccc-
Confidence            99999999999999999999999999999999999999998776655332211 1123344444432110      000 


Q ss_pred             ceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecch
Q 005867          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (673)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~  275 (673)
                      ..+...++...  ..........++++++++|||||||.||+|.++|+++..........+     ++..++++++.+|+
T Consensus       158 ~~~~~~~~~~~--~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl  230 (542)
T PRK06155        158 AGWSTAPLPPL--DAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL-----EIGADDVLYTTLPL  230 (542)
T ss_pred             cccchhhhccc--CCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhc-----CCCCCCEEEEecCH
Confidence            00001111111  111122344678999999999999999999999999988877666655     78899999999999


Q ss_pred             HhHHHHHHhHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 005867          276 AHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (673)
Q Consensus       276 ~~~~gl~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (673)
                      +|..++...+.++..|+++++.+. ++..++..++++++|+++++|+++..|.+......                    
T Consensus       231 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~--------------------  290 (542)
T PRK06155        231 FHTNALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARES--------------------  290 (542)
T ss_pred             HHHHHHHHHHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccc--------------------
Confidence            999998878888999999998877 89999999999999999999999887754211000                    


Q ss_pred             HhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCccc
Q 005867          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM  434 (673)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~  434 (673)
                                               ...+++|.++.||  +++.+.+.+.+.+++++++.||+||++..+.....  ...
T Consensus       291 -------------------------~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~--~~~  341 (542)
T PRK06155        291 -------------------------DRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTHG--SQR  341 (542)
T ss_pred             -------------------------cccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCCC--CCC
Confidence                                     0114788877666  57889999999899999999999999987665432  233


Q ss_pred             cCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecC---CccccccCCchhhhhhccCCccccCceEEECCCCcEEE
Q 005867          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKI  511 (673)
Q Consensus       435 ~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp---~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~  511 (673)
                      .+++|.++++++++|++ +++.  +++.|+.|||+++|+   .++.||+++++.+...|.+|||+|||+|+++++|.+++
T Consensus       342 ~~~vG~~~~~~~~~i~d-~~~~--~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~~~~~dG~l~i  418 (542)
T PRK06155        342 PGSMGRLAPGFEARVVD-EHDQ--ELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRF  418 (542)
T ss_pred             CCCcCccCCCceEEEEC-CCCC--CCCCCCceEEEEecCCccccchhhcCCHHHHHHhhcCCcEeccceEEEcCCceEEE
Confidence            47899999999999998 5544  455668999999998   68999999999999989999999999999999999999


Q ss_pred             eecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHH
Q 005867          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  588 (673)
Q Consensus       512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (673)
                      .||.+|+|++ +|.+|+|.+||++|.+||+|.+|+|++.+++   +.+.+++++..+..                .+..+
T Consensus       419 ~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~----------------~~~~~  481 (542)
T PRK06155        419 VDRIKDAIRR-RGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTA----------------LEPVA  481 (542)
T ss_pred             EecCCCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCC----------------CCHHH
Confidence            9999999996 8999999999999999999999999987753   46777887765321                02234


Q ss_pred             HHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 005867          589 LQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  657 (673)
Q Consensus       589 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~  657 (673)
                      +++++.+.                      |+.|++|..|.+++      .+|+|++||++|++|++++
T Consensus       482 ~~~~~~~~----------------------l~~~~~P~~i~~~~------~iP~t~~GKi~r~~l~~~~  522 (542)
T PRK06155        482 LVRHCEPR----------------------LAYFAVPRYVEFVA------ALPKTENGKVQKFVLREQG  522 (542)
T ss_pred             HHHHHHhh----------------------CcCccCCcEEEEec------cCCCCcccceeHHHHHhhc
Confidence            44444433                      99999999999883      2369999999999999977

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.6e-61  Score=529.68  Aligned_cols=476  Identities=19%  Similarity=0.205  Sum_probs=390.6

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHH
Q 005867           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (673)
Q Consensus        42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~  121 (673)
                      ++|.+.|+++|+++||++|+++.   +      .++||.||.+++.++|.+|.+.|. +|++|+|+++|++++++++|||
T Consensus         1 ~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~   70 (487)
T PRK07638          1 MGITKEYKKHASLQPNKIAIKEN---D------RVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGA   70 (487)
T ss_pred             CChHHHHHHHHHhCCCCeEEecC---C------cEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHH
Confidence            36889999999999999999864   3      489999999999999999999884 8999999999999999999999


Q ss_pred             HhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecHH
Q 005867          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (673)
Q Consensus       122 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  201 (673)
                      +++|++++|+++.++.+++.++++.++++++|++......+...      . ..++..+.                  +.
T Consensus        71 ~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~------~-~~~~~~~~------------------~~  125 (487)
T PRK07638         71 AMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE------E-GRVIEIDE------------------WK  125 (487)
T ss_pred             HHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc------c-ceEEEehh------------------hh
Confidence            99999999999999999999999999999999988654433110      0 11221111                  11


Q ss_pred             HHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHH
Q 005867          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (673)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl  281 (673)
                      +..... ...........+++++++|||||||.||+|.++|++++..+......+     ++..+|+++...|++|..++
T Consensus       126 ~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~l~~~~~l  199 (487)
T PRK07638        126 RMIEKY-LPTYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDF-----HMKREDSVLIAGTLVHSLFL  199 (487)
T ss_pred             hhhhhc-cccccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CcCCCCEEEEeecchHHHHH
Confidence            111111 011111122356789999999999999999999999998888766655     78889999999999998887


Q ss_pred             HHhHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcC
Q 005867          282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (673)
Q Consensus       282 ~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (673)
                      ...+.+++.|+++++.+. ++..+++.++++++|++.++|+++..|.+...                             
T Consensus       200 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----------------------------  250 (487)
T PRK07638        200 YGAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENR-----------------------------  250 (487)
T ss_pred             HHHHHHHccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC-----------------------------
Confidence            777888999999998876 89999999999999999999999988765200                             


Q ss_pred             CcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCCCCccccCCcC
Q 005867          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG  439 (673)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G  439 (673)
                                          ...+.+.++++|+.++.++.+++.+.+ ++.+++.||+||++.++............++|
T Consensus       251 --------------------~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G  310 (487)
T PRK07638        251 --------------------VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVG  310 (487)
T ss_pred             --------------------cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCC
Confidence                                012556678899999999999999988 78999999999999876655433344457899


Q ss_pred             CCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCCcEEEeecCCCeE
Q 005867          440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI  519 (673)
Q Consensus       440 ~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i  519 (673)
                      .|+++++++|+| +++.  +++.|+.|||+++|+.++.||+++++.+...+.+|||+|||+|++|++|++++.||.+|+|
T Consensus       311 ~~~~~~~~~i~d-~~g~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~d~~g~l~i~GR~~d~i  387 (487)
T PRK07638        311 RPFHNVQVRICN-EAGE--EVQKGEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMI  387 (487)
T ss_pred             cccCCcEEEEEC-CCCC--CCCCCCCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeEcCCCeEEEEecCCCeE
Confidence            999999999999 6554  4566789999999999999999999888877789999999999999999999999999999


Q ss_pred             EcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHH
Q 005867          520 KISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE  596 (673)
Q Consensus       520 ~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (673)
                      ++ +|.+|+|.+||++|.+||+|.+|+|++..++   +.++++|+...                    ...++.+++.+.
T Consensus       388 ~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~--------------------~~~~l~~~~~~~  446 (487)
T PRK07638        388 LF-GGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGSA--------------------TKQQLKSFCLQR  446 (487)
T ss_pred             Ee-CCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEECCC--------------------CHHHHHHHHHHH
Confidence            97 8999999999999999999999999997754   46777776432                    233444444443


Q ss_pred             HHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 005867          597 LKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  659 (673)
Q Consensus       597 l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~  659 (673)
                                            |+.|++|..+++++      .+|+|++||++|++|++++.+
T Consensus       447 ----------------------l~~~~~p~~i~~v~------~iP~t~~GKv~r~~L~~~~~~  481 (487)
T PRK07638        447 ----------------------LSSFKIPKEWHFVD------EIPYTNSGKIARMEAKSWIEN  481 (487)
T ss_pred             ----------------------hhcccCCcEEEEec------ccCCCCcccccHHHHHHHHhc
Confidence                                  89999999999983      236999999999999877654

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=8e-61  Score=537.95  Aligned_cols=515  Identities=21%  Similarity=0.257  Sum_probs=386.3

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHH
Q 005867           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (673)
Q Consensus        42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~  121 (673)
                      .|+.++|..+++++|+++|+++.   +      .++||+||.++++++|++|...|+++||+|+|+++|++++++++|||
T Consensus        14 ~~~~~~l~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~   84 (579)
T PLN03102         14 LTPITFLKRASECYPNRTSIIYG---K------TRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAV   84 (579)
T ss_pred             ccHHHHHHHHHHhCCCCeEEEEC---C------cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence            57899999999999999999864   3      47999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccc-----cccceEEEEeCCCcHHHHHHHhhCCCc
Q 005867          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS-----AQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (673)
Q Consensus       122 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~  196 (673)
                      +++|++++|+++.++.+++.++|+.++++++|++++....+.......     .... .++.++......     .....
T Consensus        85 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~  158 (579)
T PLN03102         85 PMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNL-PVIFIHEIDFPK-----RPSSE  158 (579)
T ss_pred             HhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCc-eEEEeccccccc-----CCccc
Confidence            999999999999999999999999999999999887655443221100     0111 233333211000     00112


Q ss_pred             eecHHHHHhcCccCCcc----CCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEe
Q 005867          197 PYSWDEFLHLGKVNEME----ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF  272 (673)
Q Consensus       197 ~~~~~~~~~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~  272 (673)
                      ..++.++..........    .....++++++|+|||||||.||+|.++|+++...........     .+...+++++.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~  233 (579)
T PLN03102        159 ELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGW-----EMGTCPVYLWT  233 (579)
T ss_pred             ccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhc-----CCCCCCeEEec
Confidence            23455555433221111    1124578999999999999999999999999755443322222     45667889999


Q ss_pred             cchHhHHHHHHhHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 005867          273 LPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  351 (673)
Q Consensus       273 ~p~~~~~gl~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (673)
                      +|++|..++...+.++..|+++++... ++..+++.|+++++|+++++|+++..|.+.......                
T Consensus       234 ~pl~h~~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~----------------  297 (579)
T PLN03102        234 LPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLS----------------  297 (579)
T ss_pred             CChhhhcchhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccC----------------
Confidence            999999998777778888999888776 888999999999999999999999988653110000                


Q ss_pred             HHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCC
Q 005867          352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE  431 (673)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~  431 (673)
                                                   ..++++.+++||+++++.+.+++.+ +|.++++.||+||+++.+.......
T Consensus       298 -----------------------------~~~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE~~~~~~~~~~~~  347 (579)
T PLN03102        298 -----------------------------PRSGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTEATGPVLFCEWQD  347 (579)
T ss_pred             -----------------------------CcccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccccCcccccccccc
Confidence                                         0136788999999999999999876 5999999999999986543321100


Q ss_pred             -------------ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccC
Q 005867          432 -------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (673)
Q Consensus       432 -------------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TG  498 (673)
                                   ....+..+.+++++  .+.+.+.+...+.+.++.|||+++|+.++.||+++++.+...|.+|||+||
T Consensus       348 ~~~~~~~~~~~~~~~~~g~~~~~~~~v--~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~gw~~TG  425 (579)
T PLN03102        348 EWNRLPENQQMELKARQGVSILGLADV--DVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNTG  425 (579)
T ss_pred             ccccCCcccccccccCCCcccccccce--EEeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhhccCceecC
Confidence                         00112333344444  444422333333333468999999999999999999999999999999999


Q ss_pred             ceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcC
Q 005867          499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNG  575 (673)
Q Consensus       499 Dlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~  575 (673)
                      |+|++|+||++++.||.+|+|+. +|++|+|.+||++|.+||.|.+|+|++.+++   +.++|+|++.++....      
T Consensus       426 Dlg~~d~dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~------  498 (579)
T PLN03102        426 DVGVIHPDGHVEIKDRSKDIIIS-GGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTK------  498 (579)
T ss_pred             ceEEEcCCCeEEEEeccCcEEEE-CCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCccccc------
Confidence            99999999999999999999996 8999999999999999999999999998764   4789999887643110      


Q ss_pred             CCCcHHHHh-ccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 005867          576 HAGSFLELC-SLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  654 (673)
Q Consensus       576 ~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~  654 (673)
                       ...+.+.. +..++++++++.                      ||+|++|..+++++      .+|+|++||++|++|+
T Consensus       499 -~~~~~~~~~~~~~l~~~~~~~----------------------L~~~~~P~~i~~~~------~~P~t~~gKi~r~~L~  549 (579)
T PLN03102        499 -EDRVDKLVTRERDLIEYCREN----------------------LPHFMCPRKVVFLQ------ELPKNGNGKILKPKLR  549 (579)
T ss_pred             -ccccccccccHHHHHHHHHhh----------------------cccccCCeEEEEcc------cCCCCCcccccHHHHH
Confidence             00000000 122333333332                      99999999999883      3369999999999999


Q ss_pred             HHHHHH
Q 005867          655 IYYQVE  660 (673)
Q Consensus       655 ~~~~~~  660 (673)
                      +++++.
T Consensus       550 ~~~~~~  555 (579)
T PLN03102        550 DIAKGL  555 (579)
T ss_pred             HHHHHh
Confidence            998773

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.2e-60  Score=533.07  Aligned_cols=508  Identities=20%  Similarity=0.267  Sum_probs=401.3

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      ..++.++|+.+++++|+++++.+.     ..+.++.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus         9 ~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la   83 (539)
T PRK07008          9 PLLISSLIAHAARHAGDTEIVSRR-----VEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYG   83 (539)
T ss_pred             CCCHHHHHHHHHhhCCCceEEEee-----ccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            367999999999999998888653     122346899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecH
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  200 (673)
                      |+++|++++|+++.++++++..+++.+++++++++.+....+.+.. ........++...+....     ........++
T Consensus        84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  157 (539)
T PRK07008         84 VSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALA-PQCPNVKGWVAMTDAAHL-----PAGSTPLLCY  157 (539)
T ss_pred             HHhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHH-hhCCCceEEEEEccCCcc-----ccCCcccccH
Confidence            9999999999999999999999999999999999987655443221 122334444444332110     0011224566


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHh--hhhhhhccccCCCCCCcEEEEecchHhH
Q 005867          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS--GVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (673)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~--~~~~~~~~~~~~~~~~d~~l~~~p~~~~  278 (673)
                      +++....... .......++++++++|||||||.||+|.++|++++....  .+...+     ++..+|++++.+|++|.
T Consensus       158 ~~l~~~~~~~-~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~  231 (539)
T PRK07008        158 ETLVGAQDGD-YDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAM-----GLSARDAVLPVVPMFHV  231 (539)
T ss_pred             HHHhcccCCC-cCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhccccc-----CCCCCceEEecCchHHh
Confidence            6665443221 122345678899999999999999999999999875432  222223     67789999999999998


Q ss_pred             HHHHHhHHHhhcCcEEEEecC--CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh
Q 005867          279 LDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (673)
Q Consensus       279 ~gl~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (673)
                      .++...+.++..|+++++.+.  ++..+.+.++++++|++.++|+++..+++......                      
T Consensus       232 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~----------------------  289 (539)
T PRK07008        232 NAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAG----------------------  289 (539)
T ss_pred             hhHHHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccC----------------------
Confidence            887777778899999998764  89999999999999999999999998765321110                      


Q ss_pred             hhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCC-----
Q 005867          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-----  431 (673)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~-----  431 (673)
                                     .        ..+++|.++++|+++++.+.+.|.+.++.++++.||+||++..+.......     
T Consensus       290 ---------------~--------~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~  346 (539)
T PRK07008        290 ---------------L--------RFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQL  346 (539)
T ss_pred             ---------------C--------CcccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceecccccccccC
Confidence                           0        114899999999999999999999889999999999999997655432110     


Q ss_pred             -----ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCC
Q 005867          432 -----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN  506 (673)
Q Consensus       432 -----~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~  506 (673)
                           .....++|.|+++++++|++ +++...+.+.++.|||+++|+.++.||++++.   ..+.+|||+|||+|++++|
T Consensus       347 ~~~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~~~g~~~TGD~~~~~~d  422 (539)
T PRK07008        347 PLDEQRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPLVDGWFPTGDVATIDAD  422 (539)
T ss_pred             CchhhhhhcccCCccccceEEEEEC-CCCCccCCCCCcceEEEEeCCccchhhcCChh---hhhcCCCcccCceEEEcCC
Confidence                 11236789999999999999 66666666555689999999999999999883   3456899999999999999


Q ss_pred             CcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHH
Q 005867          507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLEL  583 (673)
Q Consensus       507 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~  583 (673)
                      |.+++.||.+|+|+. +|.+|+|.+||++|..||.|.+++|++.++.   +.++++|+..++..                
T Consensus       423 g~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----------------  485 (539)
T PRK07008        423 GFMQITDRSKDVIKS-GGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAE----------------  485 (539)
T ss_pred             CcEEEeecccCEEEe-CCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCCc----------------
Confidence            999999999999996 8999999999999999999999999997754   46777777665321                


Q ss_pred             hccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 005867          584 CSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  659 (673)
Q Consensus       584 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~  659 (673)
                      .+..++++++++.                      |++|++|..|++++      .+|+|++||++|++|++++.+
T Consensus       486 ~~~~~l~~~~~~~----------------------l~~~~~P~~i~~v~------~lP~t~sgKi~r~~l~~~~~~  533 (539)
T PRK07008        486 VTREELLAFYEGK----------------------VAKWWIPDDVVFVD------AIPHTATGKLQKLKLREQFRD  533 (539)
T ss_pred             cCHHHHHHHHHhh----------------------cccccCCeEEEEec------CCCCCCccceeHHHHHHHHHh
Confidence            0223444444433                      99999999999883      336999999999999998865

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=6.5e-61  Score=533.36  Aligned_cols=504  Identities=22%  Similarity=0.266  Sum_probs=398.7

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (673)
Q Consensus        40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l  119 (673)
                      ..++|.++|+++|+++|+++|+++.   + ..+.++.+||.||.++++++|..|.+.|+++||+|+++++|+++++++++
T Consensus         5 ~~~~l~~~~~~~a~~~p~~~a~~~~---~-~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~l   80 (517)
T PRK08008          5 GGQHLRQMWDDLADVYGHKTALIFE---S-SGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWF   80 (517)
T ss_pred             ccccHHHHHHHHHHHCCCceEEEcc---c-CCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            3478999999999999999999876   4 23445789999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceec
Q 005867          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (673)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  199 (673)
                      ||+++|++++|+++..+.+++.++++.++++.+|++.+....+.+...........++..+....        ......+
T Consensus        81 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~  152 (517)
T PRK08008         81 GLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALP--------ADDGVSS  152 (517)
T ss_pred             HHHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCc--------ccccccC
Confidence            99999999999999999999999999999999999987665543332222223334444333211        0112334


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHH
Q 005867          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (673)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~  279 (673)
                      +.++............+..++++++++|||||||.||+|.++|+++...........     .+..++++++.+|++|..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~  227 (517)
T PRK08008        153 FTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQC-----ALRDDDVYLTVMPAFHID  227 (517)
T ss_pred             HHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhc-----CCCCCCeEEEecCcHHHH
Confidence            554443322111122345678999999999999999999999999986544322222     467889999999999987


Q ss_pred             HHHH-hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhh
Q 005867          280 DRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (673)
Q Consensus       280 gl~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (673)
                      +... ++.++..|+++++.+. ++..+++.++++++|++.++|.++..+........                       
T Consensus       228 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------------  284 (517)
T PRK08008        228 CQCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSAN-----------------------  284 (517)
T ss_pred             HHHHHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccc-----------------------
Confidence            7654 5667889999999877 89999999999999999999999987753211000                       


Q ss_pred             hcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCccccCC
Q 005867          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGT  437 (673)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~  437 (673)
                                 .           ...+++.+.+++ ++++.....|.+.++.++++.||+||+++.+............+
T Consensus       285 -----------~-----------~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  341 (517)
T PRK08008        285 -----------D-----------RQHCLREVMFYL-NLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPS  341 (517)
T ss_pred             -----------c-----------ccccceeeEEec-CCCHHHHHHHHHHhCCeEEeeccccccccccccCCccccccCCc
Confidence                       0           012677777654 78888888888888999999999999987665544444444578


Q ss_pred             cCCCccceeEEEeecCCCCCCCCCCCCCceEEEec---CCccccccCCchhhhhhc-cCCccccCceEEECCCCcEEEee
Q 005867          438 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG---KTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIID  513 (673)
Q Consensus       438 ~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~g---p~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~~G  513 (673)
                      +|.|+++++++++| +++.  +++.|+.|||+++|   ++++.||+++++.+.+.| .+|||+|||+|++|++|.+++.|
T Consensus       342 ~G~~~~g~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~G  418 (517)
T PRK08008        342 IGRPGFCYEAEIRD-DHNR--PLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVD  418 (517)
T ss_pred             cccCCCCcEEEEEC-CCCC--CCCCCCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEee
Confidence            99999999999999 5554  55567899999998   689999999999999888 68999999999999999999999


Q ss_pred             cCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHH
Q 005867          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ  590 (673)
Q Consensus       514 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (673)
                      |.+|+|+. +|++|+|.+||+++.+||.|.+|+|++.+++   +.+.++|+++.+..                .+..++.
T Consensus       419 R~~d~i~~-~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~----------------~~~~~l~  481 (517)
T PRK08008        419 RRCNMIKR-GGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGET----------------LSEEEFF  481 (517)
T ss_pred             cccceEEe-CCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCC----------------CCHHHHH
Confidence            99999996 7999999999999999999999999997754   47889998876421                0223444


Q ss_pred             HHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 005867          591 NYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  654 (673)
Q Consensus       591 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~  654 (673)
                      +++.+.                      |+.|++|..+.+++      .+|+|++||++|+.|+
T Consensus       482 ~~~~~~----------------------l~~~~~P~~~~~v~------~iP~t~~gK~~r~~l~  517 (517)
T PRK08008        482 AFCEQN----------------------MAKFKVPSYLEIRK------DLPRNCSGKIIKKNLK  517 (517)
T ss_pred             HHHHhh----------------------cccccCCcEEEEec------cCCCCCccceehhhcC
Confidence            444433                      99999999999883      3469999999999864

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.8e-60  Score=530.95  Aligned_cols=507  Identities=25%  Similarity=0.294  Sum_probs=410.1

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (673)
Q Consensus        40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l  119 (673)
                      ...++.++|..+++++|+++|+++.   +      +.+||.||.+++.++|..|.+.|+++||+|+++++|+++++++++
T Consensus         9 ~~~~l~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~   79 (523)
T PRK08316          9 RRQTIGDILRRSARRYPDKTALVFG---D------RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWL   79 (523)
T ss_pred             cCCCHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            3588999999999999999999875   3      579999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceec
Q 005867          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (673)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  199 (673)
                      ||+++|++++|+++..+.+++..+++.+++++++++......+.+..... . ...+.......      ..........
T Consensus        80 a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~------~~~~~~~~~~  151 (523)
T PRK08316         80 ACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALL-P-VDTLILSLVLG------GREAPGGWLD  151 (523)
T ss_pred             HHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhc-C-ccceeeeeccc------ccccccchhh
Confidence            99999999999999999999999999999999999987766553221111 0 01111100000      0001123344


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHH
Q 005867          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (673)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~  279 (673)
                      +.++..... ..........+++++++|||||||.||+|.++|.++...+......+     ++..++++++.+|++|..
T Consensus       152 ~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~  225 (523)
T PRK08316        152 FADWAEAGS-VAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-----DMSADDIPLHALPLYHCA  225 (523)
T ss_pred             HHHHHhcCC-CccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCCceEEEccCCchhh
Confidence            555544332 11233456788999999999999999999999999998877766665     788999999999999999


Q ss_pred             HHHHh-HHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhh
Q 005867          280 DRVIE-EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (673)
Q Consensus       280 gl~~~-~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (673)
                      ++... +.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+....                         
T Consensus       226 g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------------------------  280 (523)
T PRK08316        226 QLDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDF-------------------------  280 (523)
T ss_pred             hHHHHHHHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCccc-------------------------
Confidence            98654 446889999999866 999999999999999999999999877542110                         


Q ss_pred             hcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCCCC-cccc
Q 005867          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-MCMV  435 (673)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~~-~~~~  435 (673)
                                  +..        .++++|.+++||+.++.++.+.+++.+ ++++++.||+||++.++....... ....
T Consensus       281 ------------~~~--------~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~  340 (523)
T PRK08316        281 ------------DTR--------DLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRP  340 (523)
T ss_pred             ------------ccC--------CcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCcccccccc
Confidence                        001        114899999999999999999999987 789999999999998766544332 2334


Q ss_pred             CCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCCcEEEeecC
Q 005867          436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK  515 (673)
Q Consensus       436 ~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~  515 (673)
                      +++|.|+++++++|++ +++.  +++.|+.|||+++|+.++.||+++++.+...|.+|||+|||+|+++++|.+++.||.
T Consensus       341 ~~~G~~~~~~~~~i~~-~~~~--~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~i~gR~  417 (523)
T PRK08316        341 GSAGRPVLNVETRVVD-DDGN--DVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVVDRK  417 (523)
T ss_pred             CCcccCCCCcEEEEEc-CCCC--CCCCCCcceEEEECCchhhhhcCCHHHHHHHhhCCCeeccceEEEcCCceEEEeccc
Confidence            7899999999999999 5554  455578999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHH
Q 005867          516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY  592 (673)
Q Consensus       516 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  592 (673)
                      +|+|++ +|.+|+|.+||+.|.++++|.+++|++.+++   +.++++++++++..                ....++.+.
T Consensus       418 ~~~i~~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----------------~~~~~l~~~  480 (523)
T PRK08316        418 KDMIKT-GGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGAT----------------VTEDELIAH  480 (523)
T ss_pred             ccEEEe-CCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCC----------------CCHHHHHHH
Confidence            999997 8999999999999999999999999997654   36888888876421                022233333


Q ss_pred             HHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHH
Q 005867          593 ILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID  662 (673)
Q Consensus       593 ~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~~  662 (673)
                      +++         +             |+.|++|..+++++.      +|+|++||++|++|+++|.+.++
T Consensus       481 ~~~---------~-------------l~~~~~p~~i~~v~~------~p~t~~gKi~r~~l~~~~~~~~~  522 (523)
T PRK08316        481 CRA---------R-------------LAGFKVPKRVIFVDE------LPRNPSGKILKRELRERYAGAFT  522 (523)
T ss_pred             HHH---------h-------------cccCCCCcEEEEecC------CCCCCccceeHHHHHHHHHhhcc
Confidence            332         2             999999999999833      36999999999999999987764

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.5e-61  Score=545.47  Aligned_cols=511  Identities=18%  Similarity=0.156  Sum_probs=387.2

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeecccC---CCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHH
Q 005867           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDG---KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (673)
Q Consensus        40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~---~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~  116 (673)
                      ...++.++|+++++++|+++|+++.   +.   ..+.++.+||+||.+++.++|++|.+. +++||+|+++++|++++++
T Consensus        19 ~~~~l~~~l~~~a~~~~~~~a~~~~---~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~   94 (631)
T PRK07769         19 PNTNLVRHVERWAKVRGDKLAYRFL---DFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLI   94 (631)
T ss_pred             ccCCHHHHHHHHHHhCCCCeEEEEe---ccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHH
Confidence            4478999999999999999999875   31   123357899999999999999999887 8999999999999999999


Q ss_pred             HHHHHHhcCCeEeeC-CCCCC--hhhHHHHHhccCceEEEEcchhhhhhhccccccc-ccceEEEEeCCCcHHHHHHHhh
Q 005867          117 AMEACNALSLICVPL-YDTLG--PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA-QRLRVMVCFTSLTAEQKEMAVQ  192 (673)
Q Consensus       117 ~~lA~~~~G~~~vpl-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~  192 (673)
                      ++|||+++|++++|+ ++..+  .+++.++++.++++++|+++.....+........ .....++..+....        
T Consensus        95 ~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  166 (631)
T PRK07769         95 AFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVPD--------  166 (631)
T ss_pred             HHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEcccccc--------
Confidence            999999999999999 45544  5789999999999999998876544322111000 01112222221100        


Q ss_pred             CCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEe
Q 005867          193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF  272 (673)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~  272 (673)
                                ..    .......+..++++++|+|||||||.||||+++|+++...+......+     ++..+++++++
T Consensus       167 ----------~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~  227 (631)
T PRK07769        167 ----------EV----GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDAL-----EGQEGDRGVSW  227 (631)
T ss_pred             ----------cc----ccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHc-----CCCCcceEEEe
Confidence                      00    000111234678999999999999999999999999998887766655     67889999999


Q ss_pred             cchHhHHHHHHhHHHhhcCcEEEEecC-----CHHHHHHHhhhccC---eEEEcchHHHHHHHHHHHHHHHhhchHHHHH
Q 005867          273 LPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKP---TLLAGVPRVFEKIHEGIKKALEELRPLRRRI  344 (673)
Q Consensus       273 ~p~~~~~gl~~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~---t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~  344 (673)
                      +|++|.+|+...+.+++.|+++++++.     ++..+++.+.++++   +.+.++|+++..+.........         
T Consensus       228 ~Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~---------  298 (631)
T PRK07769        228 LPFFHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKD---------  298 (631)
T ss_pred             CCCcCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchh---------
Confidence            999999999887778888999988753     78889999998876   7899999887765431000000         


Q ss_pred             HHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc---CC---ceeeecCCC
Q 005867          345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---CA---FLVQGYGLT  418 (673)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~---g~---~v~~~YG~t  418 (673)
                                             ....++        +++||.+++||+++++++.+.|.+.|   |.   .+++.||+|
T Consensus       299 -----------------------~~~~~~--------l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~T  347 (631)
T PRK07769        299 -----------------------GEPPLD--------LSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMA  347 (631)
T ss_pred             -----------------------cccCcc--------hhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchh
Confidence                                   000011        24899999999999999999999887   33   599999999


Q ss_pred             CCCCcccccCCCCc--------------------------cccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEec
Q 005867          419 ETCGPTTVCFPDEM--------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG  472 (673)
Q Consensus       419 E~~~~~~~~~~~~~--------------------------~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~g  472 (673)
                      |++..++.......                          ....++|+|+++.+++|+| ++++ .+++.|+.|||+|+|
T Consensus       348 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd-~~~g-~~~~~ge~GEl~v~g  425 (631)
T PRK07769        348 EATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVD-PETA-SELPDGQIGEIWLHG  425 (631)
T ss_pred             hheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEc-CCCC-cCCCCCCEEEEEecC
Confidence            99876554332110                          0124789999999999998 4332 355667899999999


Q ss_pred             CCccccccCCchhhhhhcc------------------CCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHH
Q 005867          473 KTLFSGYYKNPDLTRESII------------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN  534 (673)
Q Consensus       473 p~~~~gy~~~~~~~~~~~~------------------~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~  534 (673)
                      |+++.|||++++.+.+.|.                  +|||+|||+|+++ ||+|+|+||.||+||+ +|++|+|.+||+
T Consensus       426 p~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~  503 (631)
T PRK07769        426 NNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVII-DGRNHYPQDLEY  503 (631)
T ss_pred             CCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcccccEEEE-CCeeeCHHHHHH
Confidence            9999999999999998884                  3899999999995 9999999999999997 899999999999


Q ss_pred             HHhc-CcCcce--EEEEecCC----------------------CCeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHH
Q 005867          535 VYCV-APIIED--IWVYGDSL----------------------KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL  589 (673)
Q Consensus       535 ~l~~-~p~V~~--~~v~~~~~----------------------~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (673)
                      +|.+ ||.|.+  |+|++.++                      .+.++|+|++.++...               .+..++
T Consensus       504 ~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~~~---------------~~~~~l  568 (631)
T PRK07769        504 TAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAHK---------------LDPQPI  568 (631)
T ss_pred             HHHhccccccCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCcccc---------------ccHHHH
Confidence            9986 899998  88988776                      2368888888764200               023344


Q ss_pred             HHHHHHHHHHHHHhcccccccccccccccCcc-ce-eeeEEEEecCCCCCCCCccccccccchHHHHHHHHH-HHHHHHh
Q 005867          590 QNYILSELKNAAERNKVIFANWDTGCFSLLRG-FE-HIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV-EIDQLYE  666 (673)
Q Consensus       590 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~-~~-~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~-~~~~ly~  666 (673)
                      .+++++.                      |+. |. .|+.+.+++.    +.+|+|++||++|++|++.|.+ .+..-|.
T Consensus       569 ~~~~~~~----------------------l~~~~~~~p~~~~~v~~----~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~  622 (631)
T PRK07769        569 ADDIRAA----------------------IAVRHGVTVRDVLLVPA----GSIPRTSSGKIARRACRAAYLDGSLRSGYG  622 (631)
T ss_pred             HHHHHHH----------------------HHHHcCCCccEEEEECC----CccccCCCcHHHHHHHHHHHHcCCCccccC
Confidence            5555444                      553 45 4778888842    2457999999999999998754 4444443

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.8e-61  Score=550.45  Aligned_cols=477  Identities=21%  Similarity=0.194  Sum_probs=381.9

Q ss_pred             CcHHHHHHHHHHh--CCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867           42 NTAWDIFSMSVQK--YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (673)
Q Consensus        42 ~tl~~~l~~~a~~--~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l  119 (673)
                      .++.++|..++..  +||++|++..          ..+||+||.++++++|++|.+.|+++||+|+++++|+++++++++
T Consensus         4 ~~~~~~~~~~a~~~~~pd~~a~~~~----------~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~l   73 (705)
T PRK06060          4 GNLAGLLAEQASEAGWYDRPAFYAA----------DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLL   73 (705)
T ss_pred             cCHHHHHHHHHhhccCCCceEEEec----------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4788999988886  7999999743          259999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceec
Q 005867          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (673)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  199 (673)
                      ||+++|++++|++|.++.+++.++++.++++++|++......+...         .++                     .
T Consensus        74 a~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---------~~~---------------------~  123 (705)
T PRK06060         74 ACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS---------RVA---------------------E  123 (705)
T ss_pred             HHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc---------ccc---------------------h
Confidence            9999999999999999999999999999999999987654433110         000                     0


Q ss_pred             HHHHHhcC-ccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhh-hhhccccCCCCCCcEEEEecchHh
Q 005867          200 WDEFLHLG-KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD-LFLDQFEDKMTVDDVYLSFLPLAH  277 (673)
Q Consensus       200 ~~~~~~~~-~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~-~~~~~~~~~~~~~d~~l~~~p~~~  277 (673)
                      ..++.... ...+....+..++++++++|||||||.||+|.++|+++...+..+. ..+     ++..++++++..|++|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~  198 (705)
T PRK06060        124 AAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKAL-----RLTPEDTGLCSARMYF  198 (705)
T ss_pred             hhhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhh-----CCCCcceeEEeccchh
Confidence            01111110 0011112234678999999999999999999999999988776543 234     6788999999999999


Q ss_pred             HHHHHH-hHHHhhcCcEEEEecC--CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 005867          278 ILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (673)
Q Consensus       278 ~~gl~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (673)
                      .+++.. ++.++..|+++++.+.  ++..+...+.++++|+++++|+++.++.+....                      
T Consensus       199 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~----------------------  256 (705)
T PRK06060        199 AYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP----------------------  256 (705)
T ss_pred             hcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc----------------------
Confidence            888753 5677999999998874  788889999999999999999999887642110                      


Q ss_pred             HhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCCCCcc
Q 005867          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMC  433 (673)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~~~~  433 (673)
                                               ..+++||.+++||+++++++.+.|.+.+ +.++++.||+||++..+....... .
T Consensus       257 -------------------------~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~-~  310 (705)
T PRK06060        257 -------------------------DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDE-W  310 (705)
T ss_pred             -------------------------ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCCC-C
Confidence                                     0114899999999999999999999888 589999999999986654333222 2


Q ss_pred             ccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCCcEEEee
Q 005867          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID  513 (673)
Q Consensus       434 ~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~G  513 (673)
                      ..+++|+|+++++++|++ +++.  +++.|+.|||||+|+.++.||+++++.+..  .+|||+|||+|++++||+++++|
T Consensus       311 ~~~~iG~p~~~~~v~i~d-~~g~--~~~~g~~GEl~i~g~~v~~GY~~~~~~~~~--~~~~~~TGDl~~~~~dG~l~~~G  385 (705)
T PRK06060        311 RLGTLGRVLPPYEIRVVA-PDGT--TAGPGVEGDLWVRGPAIAKGYWNRPDSPVA--NEGWLDTRDRVCIDSDGWVTYRC  385 (705)
T ss_pred             CcCcccccCCCcEEEEEC-CCCC--CCCCCCceEEEEccchhhhhhhCCCccccc--CCCcEECCeeEEECCCceEEEec
Confidence            347899999999999999 5554  456678999999999999999999876432  47899999999999999999999


Q ss_pred             cCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHH
Q 005867          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ  590 (673)
Q Consensus       514 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (673)
                      |.||+||+ +|++|+|.+||++|.+||+|.+|+|++.++.   +.++++|++..+..                 ...+..
T Consensus       386 R~dd~ik~-~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~-----------------~~~~~~  447 (705)
T PRK06060        386 RADDTEVI-GGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGAT-----------------IDGSVM  447 (705)
T ss_pred             ccCceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccC-----------------cChHHH
Confidence            99999997 7999999999999999999999999987654   47889988765321                 001111


Q ss_pred             HHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 005867          591 NYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  658 (673)
Q Consensus       591 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~  658 (673)
                          +++.++++ ++             ||.|++|..|++++      .+|+|++||++|++|++.+.
T Consensus       448 ----~~i~~~l~-~~-------------L~~~~~P~~i~~v~------~iP~t~~GKidr~~L~~~~~  491 (705)
T PRK06060        448 ----RDLHRGLL-NR-------------LSAFKVPHRFAVVD------RLPRTPNGKLVRGALRKQSP  491 (705)
T ss_pred             ----HHHHHHHH-Hh-------------CCCCcCCcEEEEee------cCCCCcchhhHHHHHHhhcc
Confidence                12222222 12             99999999999983      33699999999999998774

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2e-60  Score=531.86  Aligned_cols=503  Identities=24%  Similarity=0.277  Sum_probs=408.8

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      -+++.+.|..+|+.+|+++|+.+.   +      +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus        16 ~~n~~~~~~~~a~~~~~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a   86 (542)
T PRK07786         16 RQNWVNQLARHALMQPDAPALRFL---G------NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLA   86 (542)
T ss_pred             ccCHHHHHHHHHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            478999999999999999999875   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecH
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  200 (673)
                      |+++|++++|+++..+.+++..+++.+++++++++......+... ....+....++...+..          .....++
T Consensus        87 ~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~~  155 (542)
T PRK07786         87 ANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAV-RDIVPLLSTVVVAGGSS----------DDSVLGY  155 (542)
T ss_pred             HHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHh-hhccCccceEEEecCCC----------cccccCH
Confidence            999999999999999999999999999999999998765544221 11223334444443211          1123456


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCC-CCCcEEEEecchHhHH
Q 005867          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM-TVDDVYLSFLPLAHIL  279 (673)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~  279 (673)
                      .++....... ........+++++++|||||||.||+|.++|+++...+......+     ++ ..++++++.+|++|.+
T Consensus       156 ~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~~  229 (542)
T PRK07786        156 EDLLAEAGPA-HAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTN-----GADINSDVGFVGVPLFHIA  229 (542)
T ss_pred             HHHhhccCCC-CCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhc-----CCCCCCceEEEecchHHHH
Confidence            6665443222 223345667899999999999999999999999998887765555     44 5678999999999999


Q ss_pred             HHHHhHHHhhcCcEEEEecC---CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh
Q 005867          280 DRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (673)
Q Consensus       280 gl~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (673)
                      |+...+.++..|+++++.+.   ++..+++.++++++|.++++|+++..+........                      
T Consensus       230 g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~----------------------  287 (542)
T PRK07786        230 GIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARP----------------------  287 (542)
T ss_pred             HHHHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCc----------------------
Confidence            98878888999999998652   89999999999999999999999998865321000                      


Q ss_pred             hhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCCCC-ccc
Q 005867          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-MCM  434 (673)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~~-~~~  434 (673)
                                              ...++|.+++||+++++++.+.+.+.+ +.++++.||+||++.+.+...... ...
T Consensus       288 ------------------------~~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~  343 (542)
T PRK07786        288 ------------------------RDLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRK  343 (542)
T ss_pred             ------------------------cCcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCccccccc
Confidence                                    002689999999999999999999988 789999999999987755443322 233


Q ss_pred             cCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCCcEEEeec
Q 005867          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDR  514 (673)
Q Consensus       435 ~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR  514 (673)
                      .+++|.|++++.++|++ +++.  +++.|+.|||+++|+.++.||+++++.+...|.+|||+|||+++++++|.++++||
T Consensus       344 ~~~~G~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TGDl~~~~~~g~~~i~GR  420 (542)
T PRK07786        344 LGSVGKVIPTVAARVVD-ENMN--DVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDEEGYVWVVDR  420 (542)
T ss_pred             CCCccccCCCceEEEEC-CCCC--CCcCCCceEEEEEChhhhhhhcCCHHHHHHHhhCCcccccceEEEcCCceEEEEec
Confidence            47899999999999999 6554  45566899999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHH
Q 005867          515 KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQN  591 (673)
Q Consensus       515 ~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  591 (673)
                      .+|+|++ +|.++++.+||++|.+||.|.+|+|++..++   +.+++++++.++...               ....++.+
T Consensus       421 ~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~~~l~~  484 (542)
T PRK07786        421 KKDMIIS-GGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAA---------------LTLEDLAE  484 (542)
T ss_pred             ccceEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCCC---------------CCHHHHHH
Confidence            9999996 8999999999999999999999999987644   467888887653200               01233333


Q ss_pred             HHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHH
Q 005867          592 YILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID  662 (673)
Q Consensus       592 ~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~~  662 (673)
                      ++.+.                      |++|++|..+++++      .+|+|++||++|++|+++|.+...
T Consensus       485 ~l~~~----------------------l~~~~~P~~i~~v~------~iP~t~~GKv~r~~L~~~~~~~~~  527 (542)
T PRK07786        485 FLTDR----------------------LARYKHPKALEIVD------ALPRNPAGKVLKTELRERYGACVN  527 (542)
T ss_pred             HHHhh----------------------ccCCCCCCEEEEec------cCCCCCcccccHHHHHHHHHhhhc
Confidence            33332                      99999999999883      346999999999999999987543

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=2.1e-61  Score=594.97  Aligned_cols=538  Identities=17%  Similarity=0.133  Sum_probs=399.1

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCC---CCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGK---FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~---~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~  117 (673)
                      ..++.++|+++|+++||++|+++.   +..   ....+++||+||.++++++|.+|.+.|+++||+|+|+++|+++++++
T Consensus       235 ~~~l~~~~~~~a~~~pd~~A~~~~---~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~  311 (1389)
T TIGR03443       235 RGAIHDIFADNAEKHPDRTCVVET---PSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVA  311 (1389)
T ss_pred             cCcHHHHHHHHHHhCCCCeEEEec---cccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHH
Confidence            368999999999999999999864   211   12236899999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhh---hhhhccccccc---ccceEEEEeCCCcHHHHHHHh
Q 005867          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---KELLSPDCRSA---QRLRVMVCFTSLTAEQKEMAV  191 (673)
Q Consensus       118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~  191 (673)
                      +|||+++|++++|++|.++.+++.++++.++++++|++....   ..+........   .....+. +.+....      
T Consensus       312 ~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------  384 (1389)
T TIGR03443       312 VMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALA-LQDDGSL------  384 (1389)
T ss_pred             HHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEE-ecccccc------
Confidence            999999999999999999999999999999999999876421   11100000000   0011111 1110000      


Q ss_pred             hCCCceecHHHHHhcCc--cCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEE
Q 005867          192 QTGIKPYSWDEFLHLGK--VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY  269 (673)
Q Consensus       192 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~  269 (673)
                      ..........++.....  ..........++++++++|||||||.||||+++|+++.+.+.+....+     ++..+|++
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~  459 (1389)
T TIGR03443       385 VGGSLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRF-----GLSENDKF  459 (1389)
T ss_pred             cccccccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEE
Confidence            00000000001100000  001111234678999999999999999999999999999988877766     78889999


Q ss_pred             EEecchHhHHHHHHhHHHhhcCcEEEEecC----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHH
Q 005867          270 LSFLPLAHILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF  345 (673)
Q Consensus       270 l~~~p~~~~~gl~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~  345 (673)
                      ++..|++|..++..++.+++.|+++++.+.    ++..+.+.++++++|+++++|+++..|.....              
T Consensus       460 ~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~--------------  525 (1389)
T TIGR03443       460 TMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQAT--------------  525 (1389)
T ss_pred             EEecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhccc--------------
Confidence            999999999888888899999999998764    67899999999999999999999987753110              


Q ss_pred             HHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcc
Q 005867          346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPT  424 (673)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~  424 (673)
                                                        ...++||.+++||+++++...+.+.+.+ +++++|.||+||++..+
T Consensus       526 ----------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~  571 (1389)
T TIGR03443       526 ----------------------------------TPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAV  571 (1389)
T ss_pred             ----------------------------------ccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeE
Confidence                                              0114899999999999999999888765 78999999999998766


Q ss_pred             cccCCCC----------ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhcc---
Q 005867          425 TVCFPDE----------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---  491 (673)
Q Consensus       425 ~~~~~~~----------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~---  491 (673)
                      +......          .....++|.|+++++++|++ +++...+++.|+.|||+|+||+++.||+++|+.|.+.|.   
T Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd-~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~  650 (1389)
T TIGR03443       572 SYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVN-RNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNW  650 (1389)
T ss_pred             EEEEccccccccchhhcccCcCcCCCccCCCEEEEEC-CccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCc
Confidence            5432211          01235789999999999999 666556777889999999999999999999999998872   


Q ss_pred             --------------------------CCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceE
Q 005867          492 --------------------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDI  545 (673)
Q Consensus       492 --------------------------~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~  545 (673)
                                                ++||+|||+|++++||.|+|+||.||+||+ +|++|+|.+||++|.+||.|.++
T Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki-~G~rI~p~eIE~~l~~~p~V~~a  729 (1389)
T TIGR03443       651 FVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKI-RGFRIELGEIDTHLSQHPLVREN  729 (1389)
T ss_pred             ccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEe-CcEEecHHHHHHHHHhCcchhee
Confidence                                      479999999999999999999999999997 89999999999999999999999


Q ss_pred             EEEecCCC---CeEEEEEecChhHH--HHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCc
Q 005867          546 WVYGDSLK---SMLVAVVVPCEEDT--KKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLR  620 (673)
Q Consensus       546 ~v~~~~~~---~~~~a~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp  620 (673)
                      +|++..++   +.++|+|++..+..  ..+........+....+..........+.++++++ ++             ||
T Consensus       730 ~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~-------------Lp  795 (1389)
T TIGR03443       730 VTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLK-KK-------------LP  795 (1389)
T ss_pred             EEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhhhhhhhhhHHHHHHHHH-hh-------------CC
Confidence            99875433   47999998763210  00000000000000000000011112234444443 23             99


Q ss_pred             cceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHH
Q 005867          621 GFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ  663 (673)
Q Consensus       621 ~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~~~  663 (673)
                      .|++|..+++++      .+|+|++||++|++|++.+.+.++.
T Consensus       796 ~y~~P~~~~~~~------~lP~t~~GKidr~~L~~~~~~~~~~  832 (1389)
T TIGR03443       796 SYAIPTVIVPLK------KLPLNPNGKVDKPALPFPDTAQLAA  832 (1389)
T ss_pred             cccCCceEEEcc------cCCCCCCccccHhhcCCCchhhhhh
Confidence            999999998873      3469999999999997665554443

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.2e-60  Score=530.31  Aligned_cols=502  Identities=23%  Similarity=0.286  Sum_probs=399.5

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHH
Q 005867           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (673)
Q Consensus        39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~  118 (673)
                      ....|+.++|...|+++|+++|+++.   +      +.+||.||.+++.++|..|.+.|+++||+|+++++|++++++++
T Consensus         4 ~~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~   74 (528)
T PRK07470          4 RRVMNLAHFLRQAARRFPDRIALVWG---D------RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESM   74 (528)
T ss_pred             ccCCCHHHHHHHHHHHCCCceEEEEC---C------ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHH
Confidence            34578999999999999999999864   3      47999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCcee
Q 005867          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (673)
Q Consensus       119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  198 (673)
                      +||+++|++++|+++..+.+.+.++++.++++.+++++......... .........++.+....            ...
T Consensus        75 lA~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------~~~  141 (528)
T PRK07470         75 FAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAV-RAASPDLTHVVAIGGAR------------AGL  141 (528)
T ss_pred             HHHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHH-HhhCCcCceEEEeCCCc------------ccc
Confidence            99999999999999999999999999999999999998754433211 11112223333333211            123


Q ss_pred             cHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhH
Q 005867          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (673)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~  278 (673)
                      ++.++...............++++++++|||||||.||+|.++|+++...+......+   ..+....|+++..+|++|.
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~  218 (528)
T PRK07470        142 DYEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADL---MPGTTEQDASLVVAPLSHG  218 (528)
T ss_pred             cHHHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHh---ccCCCcccEEEEeccchhH
Confidence            5555554432222233345778999999999999999999999999876554322211   1145678999999999999


Q ss_pred             HHHHHhHHHhhcCcEEEEecC---CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 005867          279 LDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (673)
Q Consensus       279 ~gl~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (673)
                      +++... ..++.|++.++++.   ++..+++.++++++|.+.++|+++..+.+....                       
T Consensus       219 ~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----------------------  274 (528)
T PRK07470        219 AGIHQL-CQVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAV-----------------------  274 (528)
T ss_pred             HHHHHH-HHHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCc-----------------------
Confidence            998654 35677777776653   889999999999999999999999887542110                       


Q ss_pred             hhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCC-----
Q 005867          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD-----  430 (673)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~-----  430 (673)
                                    +        ...++++|.+++||+++++...+.+.+.+|.++++.||+||+++.+......     
T Consensus       275 --------------~--------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~  332 (528)
T PRK07470        275 --------------D--------RYDHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAE  332 (528)
T ss_pred             --------------C--------CCCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhcccc
Confidence                          0        0112489999999999999999999888899999999999998766543221     


Q ss_pred             --CccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCCc
Q 005867          431 --EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGV  508 (673)
Q Consensus       431 --~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~  508 (673)
                        .....+++|.|++++++++++ +++.  +++.|+.|||+++|+.++.||+++++.+...|.+|||+|||+|+++++|+
T Consensus       333 ~~~~~~~~~~G~~~~g~~~~i~d-~~~~--~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~  409 (528)
T PRK07470        333 DGPDARIGTCGFERTGMEVQIQD-DEGR--ELPPGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLGHLDARGF  409 (528)
T ss_pred             ccccceeeccCcccCCcEEEEEC-CCCC--CCCCCCceEEEEeCCccchhhcCCHHHHHhhhcCCcEecceeEEEccCCe
Confidence              122346889999999999998 5554  45567899999999999999999999999889999999999999999999


Q ss_pred             EEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhc
Q 005867          509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS  585 (673)
Q Consensus       509 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~  585 (673)
                      +++.||.||+|++ +|++|+|.+||++|.++|.|.+|+|++.+++   +.++++++..++..                .+
T Consensus       410 l~~~GR~dd~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~----------------~~  472 (528)
T PRK07470        410 LYITGRASDMYIS-GGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAP----------------VD  472 (528)
T ss_pred             EEEeCCccceEEe-CCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCC----------------CC
Confidence            9999999999997 7999999999999999999999999997654   36777887765420                02


Q ss_pred             cHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 005867          586 LVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  659 (673)
Q Consensus       586 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~  659 (673)
                      ..++++++.+.                      ||+|++|..+++++      .+|+|++||++|+.|++++++
T Consensus       473 ~~~~~~~l~~~----------------------l~~~~~P~~~~~~~------~iP~t~~GKi~r~~l~~~~~~  518 (528)
T PRK07470        473 EAELLAWLDGK----------------------VARYKLPKRFFFWD------ALPKSGYGKITKKMVREELEE  518 (528)
T ss_pred             HHHHHHHHHHh----------------------hhcCCCCcEEEEec------cCCCCCcccccHHHHHHHHHh
Confidence            33445544443                      99999999998873      346999999999999988865

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=3.3e-60  Score=529.85  Aligned_cols=499  Identities=22%  Similarity=0.229  Sum_probs=395.3

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHH
Q 005867           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (673)
Q Consensus        42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~  121 (673)
                      .++.++|+.+++.+|+++|+++.   +...+..+.+||+||.+++.++|.+|.+.|+++|++|+++++|+++++++++||
T Consensus        22 ~~~~~~~~~~~~~~p~~~a~~~~---~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~   98 (538)
T TIGR03208        22 RTINDHFDAAVANCPDKPALTAY---RDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLAC   98 (538)
T ss_pred             CcHHHHHHHHHHHCCCceEEEee---cccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            58999999999999999999864   222223468999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhh----hhhcccccccccceEEEEeCCCcHHHHHHHhhCCCce
Q 005867          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (673)
Q Consensus       122 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  197 (673)
                      +++|++++|+++.++.+++.++++.++++++++++....    ...............++..+...             .
T Consensus        99 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~  165 (538)
T TIGR03208        99 ARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDG-------------D  165 (538)
T ss_pred             HhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCC-------------C
Confidence            999999999999999999999999999999999875421    00011111222333444443221             1


Q ss_pred             ecHHHHHhcCccC--C-----ccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEE
Q 005867          198 YSWDEFLHLGKVN--E-----MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL  270 (673)
Q Consensus       198 ~~~~~~~~~~~~~--~-----~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l  270 (673)
                      ..+..++......  +     .......++++++++|||||||.||+|.++|+++...+......+     ++..+++++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l  240 (538)
T TIGR03208       166 DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERL-----ELGGGDVIL  240 (538)
T ss_pred             cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhc-----CCCCCCeEE
Confidence            1233332211000  0     111235678999999999999999999999999999888777666     678899999


Q ss_pred             EecchHhHHHHHH-hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 005867          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (673)
Q Consensus       271 ~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (673)
                      +.+|++|..++.. .+.++..|+++++.+. ++..+++.++++++|++.++|.++..+........              
T Consensus       241 ~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~--------------  306 (538)
T TIGR03208       241 MASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESG--------------  306 (538)
T ss_pred             EeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccC--------------
Confidence            9999999988764 5677999999988776 89999999999999999999999988764321110              


Q ss_pred             HHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccC
Q 005867          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF  428 (673)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~  428 (673)
                                                     ...+++|.+++||+++++.+.+.+.+.+|+++++.||+||++++.....
T Consensus       307 -------------------------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  355 (538)
T TIGR03208       307 -------------------------------APVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEP  355 (538)
T ss_pred             -------------------------------CCCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCc
Confidence                                           0114899999999999999999999888999999999999988766544


Q ss_pred             CCC-ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCC
Q 005867          429 PDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG  507 (673)
Q Consensus       429 ~~~-~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G  507 (673)
                      ... .....++|+|++++++++++ +++.  +++.|+.|||+++|+.++.||+++++.+.. ..+|||+|||+|+++++|
T Consensus       356 ~~~~~~~~~~~G~~~~g~~v~i~~-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~-~~~~~~~TGD~~~~~~~g  431 (538)
T TIGR03208       356 DDALEKASTTDGRPLPGVEVKVID-ANGA--KLSQGETGRLLVRGCSNFGGYLKRPHLNST-DAEGWFDTGDLAFQDAEG  431 (538)
T ss_pred             ccchhhccCcccccCCCCEEEEEC-CCCC--CCcCCCCcEEEEecCcccccccCCcccccc-cCCCceeccceEEECCCC
Confidence            322 12235789999999999999 5544  455678999999999999999999887653 368999999999999999


Q ss_pred             cEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHh
Q 005867          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC  584 (673)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~  584 (673)
                      .++++||.+|+|+. +|++|+|.+||++|.+||+|.+++|++.+++   +.+.++|++..+..                .
T Consensus       432 ~l~~~gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~----------------~  494 (538)
T TIGR03208       432 YIRINGRSKDVIIR-GGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCT----------------L  494 (538)
T ss_pred             cEEEEeccCceEEE-CCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCCC----------------C
Confidence            99999999999996 8999999999999999999999999997654   46888888875321                0


Q ss_pred             ccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 005867          585 SLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  654 (673)
Q Consensus       585 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~  654 (673)
                      +..++.+        ++.+.+             |+.|++|..+++++      .+|+|++||++|++|+
T Consensus       495 ~~~~l~~--------~~~~~~-------------l~~~~~P~~i~~v~------~iP~t~~gKv~r~~L~  537 (538)
T TIGR03208       495 DFAAMVA--------FLKAQK-------------VALQYIPERLEVVD------ALPATPAGKIQKFRLR  537 (538)
T ss_pred             CHHHHHH--------HHHhcc-------------hhhccCCcEEEEec------cCCCCCccccchHhhc
Confidence            1122233        222224             89999999999883      2369999999999985

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=3.9e-60  Score=530.03  Aligned_cols=517  Identities=22%  Similarity=0.256  Sum_probs=403.9

Q ss_pred             CceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCC
Q 005867           23 PVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC  102 (673)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd  102 (673)
                      .+||+.......    +...|+.++|.++|+++|+++|+++.   .+.    +.+||.||.+++.++|..|.+.|+++||
T Consensus        13 ~~~~~~~~~~~~----~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~   81 (546)
T PLN02330         13 HIFRSRYPSVPV----PDKLTLPDFVLQDAELYADKVAFVEA---VTG----KAVTYGEVVRDTRRFAKALRSLGLRKGQ   81 (546)
T ss_pred             eeeccCCCCCCC----CCCCcHHHHHhhhhhcCCCccEEEec---CCC----CcccHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            467766444321    34588999999999999999999863   221    5799999999999999999999999999


Q ss_pred             EEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCC
Q 005867          103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL  182 (673)
Q Consensus       103 ~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  182 (673)
                      +|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++++|+++.....+....      .. ++.++..
T Consensus        82 ~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~------~~-~i~~~~~  154 (546)
T PLN02330         82 VVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLG------LP-VIVLGEE  154 (546)
T ss_pred             EEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcC------Cc-EEEecCC
Confidence            9999999999999999999999999999999999999999999999999999988766553211      11 2222221


Q ss_pred             cHHHHHHHhhCCCceecHHHHHhcCccC--CccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhcccc
Q 005867          183 TAEQKEMAVQTGIKPYSWDEFLHLGKVN--EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFE  260 (673)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~  260 (673)
                      .          ......|.+++......  ........++++++++|||||||.||+|.++|+++...+......+   .
T Consensus       155 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~  221 (546)
T PLN02330        155 K----------IEGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSV---G  221 (546)
T ss_pred             C----------CCCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhcc---C
Confidence            1          11223466655443211  1122344678999999999999999999999999987765422111   1


Q ss_pred             CCCCCCcEEEEecchHhHHHHHH-hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhc
Q 005867          261 DKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR  338 (673)
Q Consensus       261 ~~~~~~d~~l~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~  338 (673)
                      ......++.+..+|++|.+++.. ++.++..|+++++.+. ++..++..++++++|.+.++|+++..+.....       
T Consensus       222 ~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-------  294 (546)
T PLN02330        222 PEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPI-------  294 (546)
T ss_pred             ccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCcc-------
Confidence            12234568899999999999764 5667889999888877 99999999999999999999999988764211       


Q ss_pred             hHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCC
Q 005867          339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGL  417 (673)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~  417 (673)
                                                    .+.+.+.      ..++|.+++||+++++++.+++.+.| ++++++.||+
T Consensus       295 ------------------------------~~~~~~~------~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~  338 (546)
T PLN02330        295 ------------------------------VEEFDLS------KLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGL  338 (546)
T ss_pred             ------------------------------ccccccc------hheeeeEEEcCCcCCHHHHHHHHHHcCCCeEEecccc
Confidence                                          0000000      01579999999999999999999988 8999999999


Q ss_pred             CCCCCcccccCCCC----ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cC
Q 005867          418 TETCGPTTVCFPDE----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID  492 (673)
Q Consensus       418 tE~~~~~~~~~~~~----~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~  492 (673)
                      ||++.+........    .....++|.|++++++++++ ++.+ .+++.|+.|||+++|+.++.||+++++.+.+.+ .+
T Consensus       339 tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~-~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~  416 (546)
T PLN02330        339 TEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFID-PDTG-RSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDED  416 (546)
T ss_pred             cccccceecCCCccccccccccCccccccCCcEEEEEe-CCCC-ccCCCCCceEEEEecchhhhhhccCccchhhhccCC
Confidence            99986544321111    12336899999999999998 4333 455667899999999999999999999888877 68


Q ss_pred             CccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHH
Q 005867          493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKK  569 (673)
Q Consensus       493 g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~  569 (673)
                      |||+|||+|++++||.+++.||.+|+|++ +|++|+|.+||++|.++|+|.+|+|++.+++   +.++++|++.++..  
T Consensus       417 g~~~TGD~~~~~~dG~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~--  493 (546)
T PLN02330        417 GWLHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAK--  493 (546)
T ss_pred             CceecccEEEEeCCCcEEEEechHHhhhc-CCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCCC--
Confidence            99999999999999999999999999997 7999999999999999999999999997643   47888888775421  


Q ss_pred             HHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccc
Q 005867          570 WAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKK  649 (673)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~  649 (673)
                                    .+.+++++++++.                      |+.|++|+.+.+++      .+|+|++||++
T Consensus       494 --------------~~~~~l~~~~~~~----------------------l~~~~~p~~~~~v~------~iP~t~~GK~~  531 (546)
T PLN02330        494 --------------ESEEDILNFVAAN----------------------VAHYKKVRVVQFVD------SIPKSLSGKIM  531 (546)
T ss_pred             --------------CCHHHHHHHHHHh----------------------cccccCceEEEEec------cCCCCCCccee
Confidence                          0223344444432                      99999999998883      23699999999


Q ss_pred             hHHHHHHHHHH
Q 005867          650 RNKLLIYYQVE  660 (673)
Q Consensus       650 R~~l~~~~~~~  660 (673)
                      |++|++++...
T Consensus       532 r~~L~~~~~~~  542 (546)
T PLN02330        532 RRLLKEKMLSI  542 (546)
T ss_pred             HHHHHHHHHhh
Confidence            99999998654

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=8.5e-59  Score=544.39  Aligned_cols=571  Identities=19%  Similarity=0.285  Sum_probs=453.4

Q ss_pred             CCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH
Q 005867           33 GFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP  112 (673)
Q Consensus        33 ~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~  112 (673)
                      .+|.+ +...|+.++|++.++++|+++|+...   . ..+.++++||+|+.+++.++|++|.+.|+++||+|+|+++|++
T Consensus       419 ~~~~~-~~~~Tl~dll~~~a~~~pd~~al~~~---~-~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~  493 (1452)
T PTZ00297        419 EYNPL-AGVRSLGEMWERSVTRHSTFRCLGQT---S-ESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASR  493 (1452)
T ss_pred             cCCCc-ccCCCHHHHHHHHHHHCCCCeEEEEe---c-cCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH
Confidence            34444 33469999999999999999998642   1 1234578999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHH-HHHh
Q 005867          113 QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK-EMAV  191 (673)
Q Consensus       113 e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~  191 (673)
                      +|+++.+||+++|++++|+++.  .+++.+++++++++++|++.+....+.+...   ..++.++++++...... ....
T Consensus       494 Ewvia~lA~~~~GaV~VPly~t--~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~---~~Lr~IIv~d~~~~~~~~~~~~  568 (1452)
T PTZ00297        494 NIVILEVACALYGFTTLPLVGK--GSTMRTLIDEHKIKVVFADRNSVAAILTCRS---RKLETVVYTHSFYDEDDHAVAR  568 (1452)
T ss_pred             HHHHHHHHHHHcCCEEEeCCCC--HHHHHHHHHhcCCcEEEEchhHHHHHHhhcc---cCCcEEEEECCCcccccccccc
Confidence            9999999999999999999753  6789999999999999999888776654322   25777888764211000 0000


Q ss_pred             hCCCceecHHHHHhcCccCCc-cCCCCCCCceEEEEe---ccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCc
Q 005867          192 QTGIKPYSWDEFLHLGKVNEM-EILPPQPFNICTIMY---TSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD  267 (673)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~---TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d  267 (673)
                      ..+....+|++++..+..... ......++|++.|+|   ||||||.||||++||++++..+........  ......+|
T Consensus       569 ~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~--~~~~~~~D  646 (1452)
T PTZ00297        569 DLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGV--LPSSFKKH  646 (1452)
T ss_pred             cCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhcc--ccCCCCCC
Confidence            112346789999887632221 123347889999996   999999999999999999999887654210  01345789


Q ss_pred             EEEEecchHhHHHHHHhHHHhhcCcEEEEecCCHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 005867          268 VYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA  347 (673)
Q Consensus       268 ~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (673)
                      ++++++|++|+++....+.+++.|+++..+  ++..+++.+++++||+++++|.+++++...+.........+.++++++
T Consensus       647 ~~Ls~LPLaHI~er~~~~~~l~~G~~I~~~--d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~  724 (1452)
T PTZ00297        647 LMVHFTPFAMLFNRVFVLGLFAHGSAVATV--DAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFER  724 (1452)
T ss_pred             EEEEechHHHHHHHHHHHHHHHcCCEEEeC--CHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            999999999999977777789999998754  789999999999999999999999999988888887778899999999


Q ss_pred             HHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCC--CCCHHHHHHHHHhcCCceeeecCCCCCCCccc
Q 005867          348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA--PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTT  425 (673)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~--~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~  425 (673)
                      +++.+...+..|   ....++++.+.++++++.+|+++|.+++||.  +++..+..      ++++..+||.||+.   +
T Consensus       725 A~~~k~~~~~~g---~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~------~i~i~~g~glTE~~---~  792 (1452)
T PTZ00297        725 AFQLRSRLINIH---RRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE------HISVCYVPCLREVF---F  792 (1452)
T ss_pred             HHHHHHHHHhcC---CCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC------CceEEEecceEEee---e
Confidence            999887766654   2456688999999999999999999999983  45533333      67789999999953   2


Q ss_pred             ccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECC
Q 005867          426 VCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP  505 (673)
Q Consensus       426 ~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~  505 (673)
                      .+..+..   ...|.|+|+++++|.++++.+..    +..|||++++       +++|+.|.+. .+||+         +
T Consensus       793 ~~~~~~~---~~~G~PlpgvEvKI~~~~E~~~~----~~~GEIlvr~-------~kdpe~T~e~-~~gW~---------~  848 (1452)
T PTZ00297        793 LPSEGVF---CVDGTPAPSLQVDLEPFDEPSDG----AGIGQLVLAK-------KGEPRRTLPI-AAQWK---------R  848 (1452)
T ss_pred             ecCCCCc---ccCCeecCceEEEEcccccccCC----CCCCeEEEEE-------CCChHHHHHh-hCcCc---------c
Confidence            3333322   22399999999999985443322    2369999964       5789888874 36664         6


Q ss_pred             CCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCCCeEEEEEecChhHHH-HHHHHcCCC-------
Q 005867          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTK-KWAYSNGHA-------  577 (673)
Q Consensus       506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~v~~~~~~~~-~~~~~~~~~-------  577 (673)
                      ||+|+|+||++|+|++++|++|.|..||+++.++|.|.+++|+|.+. ..++|+|+++.+... +|+..++..       
T Consensus       849 dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~-k~lvALVvpd~e~l~~~wa~~~gi~~~~~~~~  927 (1452)
T PTZ00297        849 DRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPS-RPIIAIVSPNRDTVEFEWRQSHCMGEGGGPAR  927 (1452)
T ss_pred             CCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCC-CceEEEEEeCHHHHHHHHHHHcCCCccccccc
Confidence            99999999999999999999999999999999999999999999874 459999999999998 999988753       


Q ss_pred             -CcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 005867          578 -GSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  656 (673)
Q Consensus       578 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~  656 (673)
                       .++.+++..  ..+.+.+.+++..+.++             +..+.+++.+.++++||+++...+||+.|++|+.+.+.
T Consensus       928 ~~~~~el~~~--~~~~v~~~i~~V~~~n~-------------l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~k  992 (1452)
T PTZ00297        928 QLGWTELVAY--ASSLLTADFACIAKENG-------------LHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSY  992 (1452)
T ss_pred             cCCHHHHHHh--HHHHHHHHHHHHHHHhC-------------cCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHH
Confidence             145555532  22344455544444445             88899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 005867          657 YQVEIDQLYEKLA  669 (673)
Q Consensus       657 ~~~~~~~ly~~~~  669 (673)
                      |+++|++||.+.+
T Consensus       993 Y~~~Ie~LY~~~~ 1005 (1452)
T PTZ00297        993 FSSVIERFYSDVE 1005 (1452)
T ss_pred             HHHHHHHHhcccc
Confidence            9999999999653

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=3.2e-60  Score=528.60  Aligned_cols=494  Identities=19%  Similarity=0.175  Sum_probs=392.6

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      ..++.++|+++++++|+++|+++.    +     +++||.||.++++++|.+|.+.|+++|++|+++++|+++++++++|
T Consensus        22 ~~~l~~~~~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la   92 (527)
T TIGR02275        22 DKPLTDILRDQAARYPDAIAIICG----N-----RQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFA   92 (527)
T ss_pred             CCcHHHHHHHHHHHCCCceEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence            567999999999999999999864    3     5899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhh----hhhcccccccccceEEEEeCCCcHHHHHHHhhCCCc
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  196 (673)
                      |+++|++++++++..+.+++.++++.++++++++++....    ..........+....++.......            
T Consensus        93 ~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  160 (527)
T TIGR02275        93 LLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRV------------  160 (527)
T ss_pred             HHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCC------------
Confidence            9999999999999999999999999999999999865321    011111111122333333322100            


Q ss_pred             eecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchH
Q 005867          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (673)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~  276 (673)
                      .......+... ..........++++++++|||||||.||+|.++|.++...+......+     .+..++++++.+|++
T Consensus       161 ~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~P~~  234 (527)
T TIGR02275       161 EAELFLWLESP-AEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----WLTQQTRYLCALPAA  234 (527)
T ss_pred             cchhhHHhhCc-CccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCCEEEECCChH
Confidence            00111111111 111122345788999999999999999999999999998887766655     678899999999999


Q ss_pred             hHHHHHH--hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 005867          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (673)
Q Consensus       277 ~~~gl~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (673)
                      |.+++..  .+.++..|+++++.+. ++..++..++++++|+++++|+++..+.+......                   
T Consensus       235 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-------------------  295 (527)
T TIGR02275       235 HNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSR-------------------  295 (527)
T ss_pred             hhhhhhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccC-------------------
Confidence            9999764  5667899999988766 89999999999999999999999988765322110                   


Q ss_pred             HHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCcc
Q 005867          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (673)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~  433 (673)
                                                ..++++|.+++||+++++++.+.+.+.+|.++++.||+||++............
T Consensus       296 --------------------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~  349 (527)
T TIGR02275       296 --------------------------YDLSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEI  349 (527)
T ss_pred             --------------------------CCccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCCCcccc
Confidence                                      011489999999999999999999998999999999999976443322212222


Q ss_pred             ccCCcCCCc-cceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCceEEECCCCcEEE
Q 005867          434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI  511 (673)
Q Consensus       434 ~~~~~G~~~-~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~  511 (673)
                      ..+++|.|+ ++.++++++ +++.  +++.|+.|||+++|+.++.||+++++.+...| .+|||+|||+|+++++|++++
T Consensus       350 ~~~~~G~~~~~~~~v~i~d-~~g~--~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~  426 (527)
T TIGR02275       350 IFTTQGRPMSPDDEVRVVD-DHGN--PVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVV  426 (527)
T ss_pred             ccccCCCCCCCCceEEEEC-CCCC--CCCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEE
Confidence            336889999 488999998 5554  45567899999999999999999999998888 689999999999999999999


Q ss_pred             eecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHH
Q 005867          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  588 (673)
Q Consensus       512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (673)
                      .||.+|+|++ +|.+|+|.+||++|.+||+|.+|+|++.++.   +.++++|++.++..                 ... 
T Consensus       427 ~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~~~-----------------~~~-  487 (527)
T TIGR02275       427 VGRAKDQINR-GGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPAL-----------------KAA-  487 (527)
T ss_pred             Eecccceeec-CCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCCCC-----------------CHH-
Confidence            9999999996 8999999999999999999999999998755   46888888765320                 222 


Q ss_pred             HHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 005867          589 LQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  654 (673)
Q Consensus       589 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~  654 (673)
                             +|.++++.++             ||.|++|..+.+++      .+|+|++||++|+.|+
T Consensus       488 -------~l~~~l~~~~-------------l~~~~~P~~i~~v~------~iP~t~sGKv~r~~L~  527 (527)
T TIGR02275       488 -------QLRRFLRERG-------------LAEYKLPDRVEFID------SLPLTAVGKIDKKALR  527 (527)
T ss_pred             -------HHHHHHHhCC-------------CccccCCCEEEEec------cCCCCCccceeHHhcC
Confidence                   3333443334             99999999999983      3369999999999874

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=8.2e-60  Score=527.93  Aligned_cols=508  Identities=21%  Similarity=0.251  Sum_probs=402.9

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      ..++.++|++.++++||++|+++.   ++     +.+||+||.+++.++|++|++.|+++||+|+++++|+++++++++|
T Consensus        22 ~~~l~~~~~~~~~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA   93 (547)
T PRK06087         22 DASLADYWQQTARAMPDKIAVVDN---HG-----ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLA   93 (547)
T ss_pred             CCCHHHHHHHHHHHCCCceEEEcC---CC-----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            357999999999999999999864   43     5799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhh-----hhhhcccccccccceEEEEeCCCcHHHHHHHhhCCC
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  195 (673)
                      |+++|++++|+++..+.+++..+++.++++++++++...     ..+.. ..........++..+....         ..
T Consensus        94 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------~~  163 (547)
T PRK06087         94 CLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILP-LQNQLPQLQQIVGVDKLAP---------AT  163 (547)
T ss_pred             HHHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHH-HHhhCCCCcEEEEeCCcCC---------Cc
Confidence            999999999999999999999999999999999976321     11111 1112223334444433221         01


Q ss_pred             ceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecch
Q 005867          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (673)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~  275 (673)
                      ...++.++....... .......++++++|+|||||||.||+|.++|.++..........+     ++..++++++.+|+
T Consensus       164 ~~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl  237 (547)
T PRK06087        164 SSLSLSQIIADYEPL-TTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL-----NLTWQDVFMMPAPL  237 (547)
T ss_pred             CccCHHHHhccCCcc-cCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeEEEecch
Confidence            122455554433211 122234678999999999999999999999999988877766555     67889999999999


Q ss_pred             HhHHHHHH-hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 005867          276 AHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (673)
Q Consensus       276 ~~~~gl~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (673)
                      +|.+|+.. .+.++..|+++++... ++..+++.+.++++|+++++|..+..++.......                   
T Consensus       238 ~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~-------------------  298 (547)
T PRK06087        238 GHATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQP-------------------  298 (547)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCC-------------------
Confidence            99999764 5667889999998877 99999999999999999988877666554211000                   


Q ss_pred             HHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCC-c
Q 005867          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-M  432 (673)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~-~  432 (673)
                                                ..++++|.+++||+++++++.+.+.+. |+++++.||+||+++......... .
T Consensus       299 --------------------------~~~~~lr~i~~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~  351 (547)
T PRK06087        299 --------------------------ADLSALRFFLCGGTTIPKKVARECQQR-GIKLLSVYGSTESSPHAVVNLDDPLS  351 (547)
T ss_pred             --------------------------CCCCCeEEEEEcCCCCCHHHHHHHHHc-CCcEEEEecccccCCccccCCCcchh
Confidence                                      012489999999999999999988775 999999999999998766544322 1


Q ss_pred             cccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCceEEECCCCcEEE
Q 005867          433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI  511 (673)
Q Consensus       433 ~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~  511 (673)
                      ...+++|.|++++.++++| +++.  +++.|+.|||+++|+.++.||+++++.+...+ .+|||+|||+|+++++|.+++
T Consensus       352 ~~~~~~G~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i  428 (547)
T PRK06087        352 RFMHTDGYAAAGVEIKVVD-EARK--TLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKI  428 (547)
T ss_pred             hcCCcCCccCCCceEEEEc-CCCC--CCcCCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEE
Confidence            2235789999999999998 5554  45667899999999999999999999988888 579999999999999999999


Q ss_pred             eecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHH
Q 005867          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  588 (673)
Q Consensus       512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (673)
                      +||.+|+|+. +|.+|+|.+||++|..+|+|.+++|++.+++   +.++++|++.....         .      .+..+
T Consensus       429 ~GR~~d~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~---------~------~~~~~  492 (547)
T PRK06087        429 TGRKKDIIVR-GGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHH---------S------LTLEE  492 (547)
T ss_pred             Eecchhhhhc-CCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCC---------C------CCHHH
Confidence            9999999996 8999999999999999999999999997654   36888888764210         0      01122


Q ss_pred             HHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHH
Q 005867          589 LQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL  664 (673)
Q Consensus       589 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~~~l  664 (673)
                              +.+++.++.             |+.+++|..|.+++      .+|+|++||++|++|++++.+.+.+=
T Consensus       493 --------~~~~~~~~~-------------l~~~~~P~~i~~v~------~iP~t~sGK~~r~~l~~~~~~~~~~~  541 (547)
T PRK06087        493 --------VVAFFSRKR-------------VAKYKYPEHIVVID------KLPRTASGKIQKFLLRKDIMRRLTQD  541 (547)
T ss_pred             --------HHHHHHhcc-------------ccccCCCeEEEEec------cCCCCCCCcCcHHHHHHHHHHHhhhh
Confidence                    222222234             99999999999983      23699999999999999998876543

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-59  Score=528.68  Aligned_cols=506  Identities=26%  Similarity=0.344  Sum_probs=401.2

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      ..+|.++|++.++++|+++|+++.   ++.    +.+||.||.+++.++|.+|.+.|+++||+|+++++|++++++++||
T Consensus        17 ~~~l~~~l~~~~~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a   89 (558)
T PRK12583         17 TQTIGDAFDATVARFPDREALVVR---HQA----LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFA   89 (558)
T ss_pred             cCcHHHHHHHHHHHCCCCeEEEec---CCC----cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHH
Confidence            468999999999999999999875   332    5799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhh-----hhhc---cc---------ccccccceEEEEeCCCc
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK-----ELLS---PD---------CRSAQRLRVMVCFTSLT  183 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~---~~---------~~~~~~~~~v~~~~~~~  183 (673)
                      |+++|++++|+++..+.+++..+++.++++++|+++....     .+..   ..         ....+....++......
T Consensus        90 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (558)
T PRK12583         90 TARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAP  169 (558)
T ss_pred             HHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCC
Confidence            9999999999999999999999999999999999764321     1100   00         00111222233222211


Q ss_pred             HHHHHHHhhCCCceecHHHHHhcCccC-----CccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhcc
Q 005867          184 AEQKEMAVQTGIKPYSWDEFLHLGKVN-----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ  258 (673)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~  258 (673)
                      .          .....|.++.......     ........++++++++|||||||.||+|.++|+++.+.+......+  
T Consensus       170 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~--  237 (558)
T PRK12583        170 P----------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESL--  237 (558)
T ss_pred             C----------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHh--
Confidence            1          1222344443322110     1112234678899999999999999999999999998888776666  


Q ss_pred             ccCCCCCCcEEEEecchHhHHHHHH-hHHHhhcCcEEEEecC--CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHH
Q 005867          259 FEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE  335 (673)
Q Consensus       259 ~~~~~~~~d~~l~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~  335 (673)
                         ++..+|++++.+|++|.+|... .+.++..|+++++...  ++..++..++++++|+++++|+++..+......   
T Consensus       238 ---~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~---  311 (558)
T PRK12583        238 ---GLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQR---  311 (558)
T ss_pred             ---CCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccc---
Confidence               7888999999999999999865 5567888999887654  899999999999999999999998766532110   


Q ss_pred             hhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcC-Cceeee
Q 005867          336 ELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQG  414 (673)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g-~~v~~~  414 (673)
                                                        +..+        +++||.+++||+++++++.+++.+.++ ..+++.
T Consensus       312 ----------------------------------~~~~--------~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~  349 (558)
T PRK12583        312 ----------------------------------GNFD--------LSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIA  349 (558)
T ss_pred             ----------------------------------cCCC--------chhheEEEecCCCCCHHHHHHHHHHcCCcceecc
Confidence                                              0001        148999999999999999999988886 479999


Q ss_pred             cCCCCCCCcccccCCCC--ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-c
Q 005867          415 YGLTETCGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I  491 (673)
Q Consensus       415 YG~tE~~~~~~~~~~~~--~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~  491 (673)
                      ||+||++.++.......  .....++|.|++++.+++++ +++  .+++.|+.|||+++|+.++.||+++++.+...| .
T Consensus       350 YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~~--~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~  426 (558)
T PRK12583        350 YGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PDG--ATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDE  426 (558)
T ss_pred             ccccccccceeccCcccccccccCCCCccCCCCeEEEEC-CCC--CCCCCCCeeEEEEEeCccchhhcCChHHHHhhcCC
Confidence            99999998776544322  22347899999999999999 553  456667899999999999999999999988887 7


Q ss_pred             CCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHH
Q 005867          492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTK  568 (673)
Q Consensus       492 ~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~  568 (673)
                      +|||+|||+|+++++|++++.||.+|+|++ +|.+|+|.+||++|..+|+|.+|+|++.+++   +.+++++++.++.. 
T Consensus       427 ~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-  504 (558)
T PRK12583        427 DGWMHTGDLATMDEQGYVRIVGRSKDMIIR-GGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHA-  504 (558)
T ss_pred             CCCeeccceEEECCCccEEEEecccceeEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCCC-
Confidence            899999999999999999999999999996 8999999999999999999999999997654   47888888765320 


Q ss_pred             HHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCcccccccc
Q 005867          569 KWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKK  648 (673)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv  648 (673)
                                     ....++++++++.                      ||.|++|..+++++      .+|+|++||+
T Consensus       505 ---------------~~~~~i~~~~~~~----------------------L~~~~~P~~i~~v~------~lP~t~sGK~  541 (558)
T PRK12583        505 ---------------ASEEELREFCKAR----------------------IAHFKVPRYFRFVD------EFPMTVTGKV  541 (558)
T ss_pred             ---------------CCHHHHHHHHHhh----------------------cccCcCCcEEEEec------cCCCCCCCCc
Confidence                           0223344444433                      99999999999883      3469999999


Q ss_pred             chHHHHHHHHHHH
Q 005867          649 KRNKLLIYYQVEI  661 (673)
Q Consensus       649 ~R~~l~~~~~~~~  661 (673)
                      +|++|++++.+++
T Consensus       542 ~r~~L~~~~~~~~  554 (558)
T PRK12583        542 QKFRMREISIEEL  554 (558)
T ss_pred             cHHHHHHHHHhhc
Confidence            9999999886654

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=1.1e-59  Score=521.85  Aligned_cols=496  Identities=24%  Similarity=0.313  Sum_probs=399.7

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      .++|.++|..++ .+|+++|+...   ++     +.+||.||.+++.++|.+|++.|+++||+|+++++|+++++++++|
T Consensus         2 ~~~l~~~~~~~~-~~~~~~a~~~~---~~-----~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la   72 (504)
T PRK07514          2 NNNLFDALRAAF-ADRDAPFIETP---DG-----LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLA   72 (504)
T ss_pred             CccHHHHHHHHh-hCCCCeEEEeC---CC-----CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            478999999999 99999999864   44     5899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecH
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  200 (673)
                      |+++|++++|+++..+.+++..+++.++++++++++.....+......  .....++.++....             ..+
T Consensus        73 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------~~~  137 (504)
T PRK07514         73 TLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAA--AGAPHVETLDADGT-------------GSL  137 (504)
T ss_pred             HHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhc--cCCceEEEecCCCc-------------ccH
Confidence            999999999999999999999999999999999998766544322111  11122333322111             011


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHH
Q 005867          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (673)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (673)
                      .+..... ..........++++++++|||||||.||+|.++|+++...+......+     ++..+|++++.+|++|..+
T Consensus       138 ~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g  211 (504)
T PRK07514        138 LEAAAAA-PDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW-----RFTPDDVLIHALPIFHTHG  211 (504)
T ss_pred             HHhhhhc-CcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCccEEEEecchHHHHH
Confidence            2211111 111222345688999999999999999999999999999987766655     6788999999999999999


Q ss_pred             HHH-hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhh
Q 005867          281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (673)
Q Consensus       281 l~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (673)
                      +.. .+.++..|+++++.+. ++..+++.+  .++|.+.++|.++..++....                           
T Consensus       212 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~---------------------------  262 (504)
T PRK07514        212 LFVATNVALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPR---------------------------  262 (504)
T ss_pred             HHHHHHHHHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCC---------------------------
Confidence            865 5567999999998877 899999988  479999999999988754210                           


Q ss_pred             cCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCccccCCc
Q 005867          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA  438 (673)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~  438 (673)
                                .+.        ...+++|.+++||+++++++.+.|.+.++.++++.||+||++........ ......++
T Consensus       263 ----------~~~--------~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~  323 (504)
T PRK07514        263 ----------LTR--------EAAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYD-GERRAGTV  323 (504)
T ss_pred             ----------CCc--------ccccceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCcc-ccccCccc
Confidence                      000        11248999999999999999999999999999999999999866543322 22334789


Q ss_pred             CCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCceEEECCCCcEEEeecCCC
Q 005867          439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKN  517 (673)
Q Consensus       439 G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~~GR~~d  517 (673)
                      |.|++++++++++ ++.+ .+++.|+.|||+++|+.++.||+++++.+.+.| .+|||+|||+|+++++|.+++.||.||
T Consensus       324 G~~~~~~~v~i~d-~~~~-~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~  401 (504)
T PRK07514        324 GFPLPGVSLRVTD-PETG-AELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKD  401 (504)
T ss_pred             ccCCCCcEEEEEE-CCCC-CCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCCccEEEeccccc
Confidence            9999999999999 4433 456677899999999999999999999999888 489999999999999999999999999


Q ss_pred             eEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHH
Q 005867          518 LIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYIL  594 (673)
Q Consensus       518 ~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  594 (673)
                      +|++ +|.+++|.+||+++..+++|.+++|++.+++   +.+++++++.++..                .+..++.+.++
T Consensus       402 ~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~  464 (504)
T PRK07514        402 LIIS-GGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAA----------------LDEAAILAALK  464 (504)
T ss_pred             eEEe-CCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCC----------------CCHHHHHHHHH
Confidence            9996 8999999999999999999999999997654   36888888775321                02233444444


Q ss_pred             HHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 005867          595 SELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  661 (673)
Q Consensus       595 ~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~  661 (673)
                      +.                      |+++++|..+++++.      +|+|++||++|++|+++|++.+
T Consensus       465 ~~----------------------l~~~~~p~~i~~v~~------~p~t~~gK~~r~~l~~~~~~~~  503 (504)
T PRK07514        465 GR----------------------LARFKQPKRVFFVDE------LPRNTMGKVQKNLLREQYADLF  503 (504)
T ss_pred             hh----------------------cccCCCCcEEEEecc------CCCCCCcceeHHHHHHHHHhhc
Confidence            33                      999999999998833      3699999999999999887653

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-59  Score=520.59  Aligned_cols=489  Identities=22%  Similarity=0.271  Sum_probs=394.9

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      |.++.++|+++++++|+++|+++.    +     +.+||.||.+++.++|.+|.+.|+++|++|+++++|++++++++||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~a~~~~----~-----~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la   71 (497)
T PRK06145          1 MFNLSASIAFHARRTPDRAALVYR----D-----QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFA   71 (497)
T ss_pred             CccHHHHHHHHHHHCCCceEEEEC----C-----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            568899999999999999999864    3     4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecH
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  200 (673)
                      |+++|++++|+++..+.+.+.++++.++++++++++........        ....+.++.....             .+
T Consensus        72 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~-------------~~  130 (497)
T PRK06145         72 ASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL--------ETPKIVIDAAAQA-------------DS  130 (497)
T ss_pred             HHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhhc--------ccceEEecCcccc-------------hh
Confidence            99999999999999999999999999999999998765433210        0111222211100             01


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHH
Q 005867          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (673)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (673)
                      ..+.. ............++++++++|||||||.||+|.++|+++...+......+     ++..+++++...|++|.++
T Consensus       131 ~~~~~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~  204 (497)
T PRK06145        131 RRLAQ-GGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIAL-----GLTASERLLVVGPLYHVGA  204 (497)
T ss_pred             HHHhc-cCCCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CCCCCcEEEEecCchhHhH
Confidence            11111 10111112245678999999999999999999999999987665544444     6788999999999999998


Q ss_pred             HHH-hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhh
Q 005867          281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (673)
Q Consensus       281 l~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (673)
                      +.. .+.+++.|+++++.+. ++..+++.++++++|.+.++|+++..++......                         
T Consensus       205 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~-------------------------  259 (497)
T PRK06145        205 FDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRD-------------------------  259 (497)
T ss_pred             HHHHHHHHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCcc-------------------------
Confidence            865 4567889999988776 9999999999999999999999998876421100                         


Q ss_pred             cCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCCC-CccccC
Q 005867          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD-EMCMVG  436 (673)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~-~~~~~~  436 (673)
                                  ..        ..+++|.+++||+++++.+.+.+.+.+ +.++++.||+||+++.++..... .....+
T Consensus       260 ------------~~--------~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~  319 (497)
T PRK06145        260 ------------RF--------DLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIG  319 (497)
T ss_pred             ------------cc--------ccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCC
Confidence                        00        113899999999999999999999888 67899999999999865544332 222347


Q ss_pred             CcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCCcEEEeecCC
Q 005867          437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK  516 (673)
Q Consensus       437 ~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~  516 (673)
                      ++|.|++++++++.+ +++.  +++.++.|||+++|+.++.||+++++.+...|.++||+|||+|+++++|+++++||.+
T Consensus       320 ~~G~~~~~~~~~i~~-~~~~--~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~  396 (497)
T PRK06145        320 STGRALAHVEIRIAD-GAGR--WLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYLDEEGFLYLTDRKK  396 (497)
T ss_pred             CcccCCCCceEEEEC-CCCC--CCCCCCceEEEEECcchhhhhcCChHHHHHHHhCCCeeccceEEEcCCCcEEEecccc
Confidence            899999999999999 6554  4456689999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHH
Q 005867          517 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI  593 (673)
Q Consensus       517 d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (673)
                      |+|++ +|.+++|.+||++|.++|+|.+++|++.+++   +.+++++++.+...                ....++.+++
T Consensus       397 ~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----------------~~~~~l~~~~  459 (497)
T PRK06145        397 DMIIS-GGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGAT----------------LTLEALDRHC  459 (497)
T ss_pred             ceEEe-CCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCC----------------CCHHHHHHHH
Confidence            99996 8999999999999999999999999997654   47888888865321                0223344444


Q ss_pred             HHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 005867          594 LSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  658 (673)
Q Consensus       594 ~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~  658 (673)
                      ++.                      |++|++|..+.+++      .+|+|++||++|++|++++.
T Consensus       460 ~~~----------------------l~~~~~p~~i~~v~------~iP~t~~GKi~r~~l~~~~~  496 (497)
T PRK06145        460 RQR----------------------LASFKVPRQLKVRD------ELPRNPSGKVLKRVLRDELN  496 (497)
T ss_pred             HHh----------------------hhcCCCCCEEEEec------cCCCCCcccccHHHHHHHhc
Confidence            433                      99999999999883      33699999999999998753

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=1e-59  Score=541.44  Aligned_cols=490  Identities=20%  Similarity=0.241  Sum_probs=377.5

Q ss_pred             CCCcHHHHHHHHHHhCCC-CCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHH
Q 005867           40 DLNTAWDIFSMSVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (673)
Q Consensus        40 ~~~tl~~~l~~~a~~~pd-~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~  118 (673)
                      +..|+.++|+.+++++|+ ++|+...   +.     +.+||+||.++++++|++|.+. +++||+|+++++|++++++++
T Consensus       202 ~~~t~~~~l~~~~~~~p~~~~a~~~~---~~-----~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~  272 (718)
T PRK08043        202 PRETLYEALLSAQYRYGAGKPCIEDV---NF-----TPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVI  272 (718)
T ss_pred             CCCCHHHHHHHHHHHhCCCCcceEcC---CC-----CcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHH
Confidence            357899999999999998 5777532   11     5799999999999999999887 599999999999999999999


Q ss_pred             HHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhc-ccccccccceEEEEeCCCcHHHHHHHhhCCCce
Q 005867          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS-PDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (673)
Q Consensus       119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  197 (673)
                      |||+++|++++|+++.++.+++.+++++++++++|++++....... .......... ++.+.+...            .
T Consensus       273 lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~------------~  339 (718)
T PRK08043        273 FGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVR-WVYLEDLKD------------D  339 (718)
T ss_pred             HHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhcccc-EEEhhhhhh------------h
Confidence            9999999999999999999999999999999999998776542110 0010111111 222221100            0


Q ss_pred             ecHHHH----HhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEec
Q 005867          198 YSWDEF----LHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL  273 (673)
Q Consensus       198 ~~~~~~----~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~  273 (673)
                      ..+.+.    .... ..........++++++++|||||||.||||.++|+++.+.+......+     ++..+|++++.+
T Consensus       340 ~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~  413 (718)
T PRK08043        340 VTTADKLWIFAHLL-MPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-----DFTPNDRFMSAL  413 (718)
T ss_pred             cchhHHHHHHHHHh-CCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh-----CCCccCeEEEcC
Confidence            001100    0000 000111234678999999999999999999999999999887766655     788999999999


Q ss_pred             chHhHHHHHH-hHHHhhcCcEEEEecC--CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 005867          274 PLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK  350 (673)
Q Consensus       274 p~~~~~gl~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (673)
                      |++|.+++.. .+.++..|+++++.+.  ++..+.+.+.++++|+++++|+++..+.+..                    
T Consensus       414 Pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--------------------  473 (718)
T PRK08043        414 PLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--------------------  473 (718)
T ss_pred             cchhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--------------------
Confidence            9999999865 5677999999998874  6678889999999999999999887653310                    


Q ss_pred             HHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCC
Q 005867          351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD  430 (673)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~  430 (673)
                                         +..        .+++||.+++||+++++++.+.|.+.+|+++++.||+||+++.++.....
T Consensus       474 -------------------~~~--------~~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~  526 (718)
T PRK08043        474 -------------------NPY--------DFARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPM  526 (718)
T ss_pred             -------------------Ccc--------cccceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecCCc
Confidence                               000        11489999999999999999999998999999999999998776544332


Q ss_pred             CccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccC--Cchh-------hhhh-ccCCccccCce
Q 005867          431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK--NPDL-------TRES-IIDGWFHTGDI  500 (673)
Q Consensus       431 ~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~--~~~~-------~~~~-~~~g~~~TGDl  500 (673)
                      . ...+++|+|++++++++++ +++.      ++.|||+++|++++.||++  +++.       +... +.+|||+|||+
T Consensus       527 ~-~~~~svG~p~pg~~~~i~d-~~~~------~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDl  598 (718)
T PRK08043        527 A-AKPGTVGRILPGMDARLLS-VPGI------EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDI  598 (718)
T ss_pred             c-cCCCCCCCcCCCCeeEEec-CCCC------CCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCE
Confidence            2 2458999999999999998 3321      3469999999999999998  3442       2222 25799999999


Q ss_pred             EEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCCC---eEEEEEecChhHHHHHHHHcCCC
Q 005867          501 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYSNGHA  577 (673)
Q Consensus       501 g~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~  577 (673)
                      |++|+||++++.||.+|+|++ +|++|+|.+||+++.+|+.+.+++|++.+++.   .+++++.... .           
T Consensus       599 g~~d~dG~l~i~GR~~d~I~~-~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~~~~-~-----------  665 (718)
T PRK08043        599 VRFDEQGFVQIQGRAKRFAKI-AGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTTDSE-L-----------  665 (718)
T ss_pred             EEEcCCCcEEEEecCCCeeEe-CcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEcCcc-c-----------
Confidence            999999999999999999997 79999999999999999988888888866543   5555553211 0           


Q ss_pred             CcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 005867          578 GSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  657 (673)
Q Consensus       578 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~  657 (673)
                             +..        ++.++++.+.             ||.|++|..+.+++.      +|+|++||++|++|++++
T Consensus       666 -------~~~--------~l~~~~~~~~-------------l~~~~vP~~i~~v~~------lP~t~~GKi~r~~L~~~~  711 (718)
T PRK08043        666 -------TRE--------KLQQYAREHG-------------VPELAVPRDIRYLKQ------LPLLGSGKPDFVTLKSMV  711 (718)
T ss_pred             -------CHH--------HHHHHHHhcC-------------CCcccCCceEEEecc------cCcCCCCCcCHHHHHHHH
Confidence                   222        2333433334             999999999999843      369999999999999877


Q ss_pred             HH
Q 005867          658 QV  659 (673)
Q Consensus       658 ~~  659 (673)
                      .+
T Consensus       712 ~~  713 (718)
T PRK08043        712 DE  713 (718)
T ss_pred             hc
Confidence            54

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=3.1e-59  Score=524.97  Aligned_cols=508  Identities=26%  Similarity=0.323  Sum_probs=402.8

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHH
Q 005867           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (673)
Q Consensus        39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~  118 (673)
                      ....+|.++|...++++|+++|+++.   ++.    +.+||.||.+++.++|.+|.+.|+++||+|+++++|++++++++
T Consensus        13 ~~~~~l~~~l~~~~~~~~~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~   85 (559)
T PRK08315         13 LLEQTIGQLLDRTAARYPDREALVYR---DQG----LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQ   85 (559)
T ss_pred             hhhccHHHHHHHHHHHCCCCeEEEEc---CCC----eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence            44568999999999999999999875   443    57999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhh-----hhhcccc------------cccccceEEEEeCC
Q 005867          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK-----ELLSPDC------------RSAQRLRVMVCFTS  181 (673)
Q Consensus       119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~------------~~~~~~~~v~~~~~  181 (673)
                      |||+++|++++|+++..+.+++..+++.++++++++++....     .+.....            ...+....++..+.
T Consensus        86 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (559)
T PRK08315         86 FATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGD  165 (559)
T ss_pred             HHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecc
Confidence            999999999999999999999999999999999999875321     1100000            00011222333322


Q ss_pred             CcHHHHHHHhhCCCceecHHHHHhcCccC-----CccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhh
Q 005867          182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVN-----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL  256 (673)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~  256 (673)
                      ..          ......+.++.......     ........++++++++|||||||.||+|.++|+++...+......+
T Consensus       166 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~  235 (559)
T PRK08315        166 EK----------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAM  235 (559)
T ss_pred             cC----------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhc
Confidence            10          11223445544322110     1112234678899999999999999999999999998888777666


Q ss_pred             ccccCCCCCCcEEEEecchHhHHHHHH-hHHHhhcCcEEEEecC--CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHH
Q 005867          257 DQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA  333 (673)
Q Consensus       257 ~~~~~~~~~~d~~l~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~  333 (673)
                           ++..+|+++..+|++|.+++.. .+.++..|+++++...  ++..+++.+.++++|+++++|+++..+...... 
T Consensus       236 -----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~-  309 (559)
T PRK08315        236 -----KLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDF-  309 (559)
T ss_pred             -----CCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCccc-
Confidence                 7889999999999999999875 5667889999885543  899999999999999999999998776532110 


Q ss_pred             HHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCc-ee
Q 005867          334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LV  412 (673)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~-v~  412 (673)
                                                          +..        .+++||.+++||+++++++.+.+.+.++.. ++
T Consensus       310 ------------------------------------~~~--------~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~  345 (559)
T PRK08315        310 ------------------------------------ARF--------DLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVT  345 (559)
T ss_pred             ------------------------------------CCC--------CchhhheeEecCCCCCHHHHHHHHHHcCCccee
Confidence                                                000        114899999999999999999999888754 99


Q ss_pred             eecCCCCCCCcccccCCCC--ccccCCcCCCccceeEEEeecCC-CCCCCCCCCCCceEEEecCCccccccCCchhhhhh
Q 005867          413 QGYGLTETCGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPE-MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRES  489 (673)
Q Consensus       413 ~~YG~tE~~~~~~~~~~~~--~~~~~~~G~~~~~~~v~i~~~~~-~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~  489 (673)
                      +.||+||++.+++......  .....++|.|+++++++++| ++ +.  +++.|+.|||+|+|+.++.||+++++.+...
T Consensus       346 ~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~--~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~  422 (559)
T PRK08315        346 IAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVD-PETGE--TVPRGEQGELCTRGYSVMKGYWNDPEKTAEA  422 (559)
T ss_pred             EEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEc-CccCC--cCCCCCceEEEEECchhhhhhcCChhHHhhc
Confidence            9999999988766544322  23347899999999999999 55 43  4556789999999999999999999999888


Q ss_pred             c-cCCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChh
Q 005867          490 I-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEE  565 (673)
Q Consensus       490 ~-~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~  565 (673)
                      | .++||+|||+|+++++|.++++||.+|+|++ +|+++++.+||++|.++|+|.+|+|++.+++   +.++++|++..+
T Consensus       423 ~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  501 (559)
T PRK08315        423 IDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIR-GGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPG  501 (559)
T ss_pred             CCCCCCEEccceEEEcCCceEEEEeeccceEEE-CCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCC
Confidence            8 7899999999999999999999999999996 7999999999999999999999999997654   368888887653


Q ss_pred             HHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccc
Q 005867          566 DTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTAT  645 (673)
Q Consensus       566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~  645 (673)
                      ..                ....++.+++.+.                      ||.|++|..+++++      .+|+|++
T Consensus       502 ~~----------------~~~~~l~~~l~~~----------------------l~~~~~P~~i~~v~------~lP~t~~  537 (559)
T PRK08315        502 AT----------------LTEEDVRDFCRGK----------------------IAHYKIPRYIRFVD------EFPMTVT  537 (559)
T ss_pred             CC----------------CCHHHHHHHHHhh----------------------cccccCCcEEEEcc------cCCCCCC
Confidence            21                0223344444432                      99999999999983      3469999


Q ss_pred             cccchHHHHHHHHHHH
Q 005867          646 LKKKRNKLLIYYQVEI  661 (673)
Q Consensus       646 GKv~R~~l~~~~~~~~  661 (673)
                      ||++|.+|++++....
T Consensus       538 GK~~r~~L~~~~~~~~  553 (559)
T PRK08315        538 GKIQKFKMREMMIEEL  553 (559)
T ss_pred             CceeHHHHHHHHHhhh
Confidence            9999999998876644

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.2e-59  Score=521.83  Aligned_cols=495  Identities=23%  Similarity=0.250  Sum_probs=399.7

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      ..|+.++|.++++++|+++|+++.   +      +.+||.||.+++.++|..|.+.|+++|++|+++++|+++++++++|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la   81 (524)
T PRK06188         11 GATYGHLLVSALKRYPDRPALVLG---D------TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGA   81 (524)
T ss_pred             CccHHHHHHHHHHHCCCCeEEEEC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            468999999999999999999864   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchh-hhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceec
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK-VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  199 (673)
                      |+++|++++|+++..+.+++..+++.++++.+++++.. ...... ..........++.+.....               
T Consensus        82 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------  145 (524)
T PRK06188         82 AQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALA-LLARVPSLKHVLTLGPVPD---------------  145 (524)
T ss_pred             HHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHH-HhhhcCCceEEEEeCCccc---------------
Confidence            99999999999999999999999999999999998762 222211 1111223334444433211               


Q ss_pred             HHHHHhcCc--cCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHh
Q 005867          200 WDEFLHLGK--VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (673)
Q Consensus       200 ~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~  277 (673)
                      +.++.....  ..........++++++++|||||||.||+|.++|.++...+......+     ++..++++++.+|++|
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~pl~~  220 (524)
T PRK06188        146 GVDLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEW-----EWPADPRFLMCTPLSH  220 (524)
T ss_pred             hhhHHHhhhccCcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCcEEEEecCchh
Confidence            111111100  001111122456699999999999999999999999999888877666     7888999999999999


Q ss_pred             HHHHHHhHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh
Q 005867          278 ILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (673)
Q Consensus       278 ~~gl~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (673)
                      .+++. .+.+++.|+++++.+. ++..+++.++++++|+++++|+++..+.+.....                       
T Consensus       221 ~~g~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~-----------------------  276 (524)
T PRK06188        221 AGGAF-FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLR-----------------------  276 (524)
T ss_pred             hhhHH-HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCcc-----------------------
Confidence            88864 4667889999999887 8999999999999999999999998876531100                       


Q ss_pred             hhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCC-----
Q 005867          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-----  431 (673)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~-----  431 (673)
                                    .        ..++++|.+++||++++++....+.+.++..+++.||+||++..+.......     
T Consensus       277 --------------~--------~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~  334 (524)
T PRK06188        277 --------------T--------RDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDD  334 (524)
T ss_pred             --------------C--------CCCcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchhccccc
Confidence                          0        0124899999999999999888888888999999999999976655443321     


Q ss_pred             ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCCcEEE
Q 005867          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKI  511 (673)
Q Consensus       432 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~  511 (673)
                      .....++|.|++++++++++ +++.  +++.|+.|||+++|+.++.||+++++.+...|.+|||+|||+|+++++|.+++
T Consensus       335 ~~~~~~~G~p~~g~~v~i~~-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~  411 (524)
T PRK06188        335 PKRLTSCGRPTPGLRVALLD-EDGR--EVAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVAREDEDGFYYI  411 (524)
T ss_pred             cccCCccccccCCcEEEEEc-CCCC--CCCCCCeeEEEEECcchhhhhcCChHHhhhhhcCCceeecceEEEcCCccEEE
Confidence            23347899999999999998 5554  45567899999999999999999999999999999999999999999999999


Q ss_pred             eecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHH
Q 005867          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  588 (673)
Q Consensus       512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (673)
                      .||.+|+|++ +|++++|.+||++|.+|++|.+++|++.+++   +.++++++++++..                ....+
T Consensus       412 ~GR~~~~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----------------~~~~~  474 (524)
T PRK06188        412 VDRKKDMIVT-GGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAA----------------VDAAE  474 (524)
T ss_pred             Eeccccceec-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCC----------------CCHHH
Confidence            9999999996 8999999999999999999999999997654   47888888775421                02233


Q ss_pred             HHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 005867          589 LQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  659 (673)
Q Consensus       589 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~  659 (673)
                      +++++++.                      ++.|++|..|++++      .+|+|++||++|++|+++|.+
T Consensus       475 l~~~~~~~----------------------l~~~~~p~~i~~v~------~~P~t~~gKi~r~~L~~~~~~  517 (524)
T PRK06188        475 LQAHVKER----------------------KGSVHAPKQVDFVD------SLPLTALGKPDKKALRARYWE  517 (524)
T ss_pred             HHHHHHHh----------------------cccCCCCcEEEEec------CCCCCccccccHHHHHHHHHh
Confidence            44444433                      89999999999983      236999999999999999855

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=9.2e-60  Score=533.20  Aligned_cols=499  Identities=18%  Similarity=0.217  Sum_probs=377.1

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccC---CCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDG---KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~---~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~  117 (673)
                      ..|+.++|+++++++|+++|+++.   +.   ..+.++.+||+||.+++.++|++|.+. +++||+|+++++|+++++++
T Consensus        33 ~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~  108 (612)
T PRK12476         33 GTTLISLIERNIANVGDTVAYRYL---DHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAG  108 (612)
T ss_pred             cCcHHHHHHHHHHhCCCceEEEEE---ccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHH
Confidence            468999999999999999999875   32   123356899999999999999999886 99999999999999999999


Q ss_pred             HHHHHhcCCeEeeC-CCCCC--hhhHHHHHhccCceEEEEcchhhhhhhcccccccc--cceEEEEeCCCcHHHHHHHhh
Q 005867          118 MEACNALSLICVPL-YDTLG--PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ--RLRVMVCFTSLTAEQKEMAVQ  192 (673)
Q Consensus       118 ~lA~~~~G~~~vpl-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~  192 (673)
                      +|||+++|++++|+ ++.++  .+++.++++.++++++|+++.....+..... ...  ....++.+++...        
T Consensus       109 ~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~--------  179 (612)
T PRK12476        109 FFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLR-NLPRLRRPRVIAIDAIPD--------  179 (612)
T ss_pred             HHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHh-hcccccCceEEEeccccc--------
Confidence            99999999999999 57666  7899999999999999998876554322111 111  1122333322100        


Q ss_pred             CCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCC-CCCCcEEEE
Q 005867          193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK-MTVDDVYLS  271 (673)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~-~~~~d~~l~  271 (673)
                                   .. ..........++++++|+|||||||.||||.++|+++.+.+......+     + +..++++++
T Consensus       180 -------------~~-~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~l~  240 (612)
T PRK12476        180 -------------SA-GESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSI-----DLLDRNTHGVS  240 (612)
T ss_pred             -------------cc-cccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHh-----ccCCCCceEEE
Confidence                         00 001111234678999999999999999999999999988776655444     5 677899999


Q ss_pred             ecchHhHHHHHHhHHHhhcCcEEEEecC-----CHHHHHHHhh--hccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHH
Q 005867          272 FLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLM--ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI  344 (673)
Q Consensus       272 ~~p~~~~~gl~~~~~~l~~G~~~v~~~~-----~~~~~~~~i~--~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~  344 (673)
                      ++|++|.+|+...+.+++.|++++++..     ++..+++.++  +++++.++++|+++..+.........         
T Consensus       241 ~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~---------  311 (612)
T PRK12476        241 WLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAE---------  311 (612)
T ss_pred             eCCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhh---------
Confidence            9999999998776666556666665542     7888999995  58999999999988877542100000         


Q ss_pred             HHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc---CC---ceeeecCCC
Q 005867          345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---CA---FLVQGYGLT  418 (673)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~---g~---~v~~~YG~t  418 (673)
                                              ...+++        +++| +++||+++++++.+.|.+.|   |+   .+++.||+|
T Consensus       312 ------------------------~~~~~l--------~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~T  358 (612)
T PRK12476        312 ------------------------GDDIDL--------SNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIA  358 (612)
T ss_pred             ------------------------hcCcch--------hHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchh
Confidence                                    000111        3889 99999999999999999887   44   489999999


Q ss_pred             CCCCcccccCCCCc--------------------------cccCCcCCCccceeEEEeecCC-CCCCCCCCCCCceEEEe
Q 005867          419 ETCGPTTVCFPDEM--------------------------CMVGTAGPVSVYSELRLEEVPE-MGYSPLDDPPCGEVCVR  471 (673)
Q Consensus       419 E~~~~~~~~~~~~~--------------------------~~~~~~G~~~~~~~v~i~~~~~-~~~~~~~~g~~GEl~v~  471 (673)
                      |++..++....+..                          ...+++|+|+++++++|+| ++ +.  +++.|+.|||+++
T Consensus       359 E~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd-~~~g~--~~~~g~~GEl~v~  435 (612)
T PRK12476        359 EATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVD-PDTGA--ELPDGEVGEIWLH  435 (612)
T ss_pred             hhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEe-CCCCc--CCCCCCEEEEEEc
Confidence            98865443221100                          0124789999999999999 55 44  4556789999999


Q ss_pred             cCCccccccCCchhhhhhcc-------------------CCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHH
Q 005867          472 GKTLFSGYYKNPDLTRESII-------------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYL  532 (673)
Q Consensus       472 gp~~~~gy~~~~~~~~~~~~-------------------~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~i  532 (673)
                      |+.++.||+++++.+.+.|.                   ++||+|||+|+++ ||+|+|+||.+|+|++ +|++|+|.+|
T Consensus       436 g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~i~GR~~d~I~~-~G~~I~p~eI  513 (612)
T PRK12476        436 GDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELYITGRIADLIVI-DGRNHYPQDI  513 (612)
T ss_pred             CCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCEEEEEeccCcEEEE-CCcccCHHHH
Confidence            99999999999999988883                   2499999999985 9999999999999997 8999999999


Q ss_pred             HHHHh-cCcCcce--EEEEecCCC--CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccc
Q 005867          533 ENVYC-VAPIIED--IWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVI  607 (673)
Q Consensus       533 E~~l~-~~p~V~~--~~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  607 (673)
                      |++|. .||.|.+  ++|++.+++  +.++++|++.++...               .+.+++.+.+++.           
T Consensus       514 E~~l~~~~p~V~~~~v~v~~~~~~~~~~~~~~v~~~~~~~~---------------~~~~~l~~~~~~~-----------  567 (612)
T PRK12476        514 EATVAEASPMVRRGYVTAFTVPAEDNERLVIVAERAAGTSR---------------ADPAPAIDAIRAA-----------  567 (612)
T ss_pred             HHHHHHhcccccCCcEEEEEecCCCcceEEEEEEecCCccc---------------ccHHHHHHHHHHH-----------
Confidence            99997 5899999  677776543  578888887754200               0223344444443           


Q ss_pred             cccccccccccCc-ccee-eeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 005867          608 FANWDTGCFSLLR-GFEH-IKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  659 (673)
Q Consensus       608 ~~~~~~~~~~~Lp-~~~~-p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~  659 (673)
                                 |+ .|.+ |..+.+++.    +.+|+|++||++|++|+++|.+
T Consensus       568 -----------l~~~~~~~p~~v~~v~~----~~lP~t~~GKi~r~~L~~~~~~  606 (612)
T PRK12476        568 -----------VSRRHGLAVADVRLVPA----GAIPRTTSGKLARRACRAQYLD  606 (612)
T ss_pred             -----------HHHhhCCcceEEEEECC----CCcCcCCchHHHHHHHHHHHHc
Confidence                       33 3555 577888742    2357999999999999998854

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=2.2e-59  Score=521.01  Aligned_cols=497  Identities=23%  Similarity=0.246  Sum_probs=401.2

Q ss_pred             cHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHHH
Q 005867           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN  122 (673)
Q Consensus        43 tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~~  122 (673)
                      +++++|+..++++|+++|+.+.   +      +++||+||.+++.++|++|.+.|+.+||+|+++++|++++++++|||+
T Consensus         1 ~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~   71 (515)
T TIGR03098         1 LLHHLLEDAAARLPDATALVHH---D------RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAA   71 (515)
T ss_pred             CHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            4789999999999999999874   3      479999999999999999999999999999999999999999999999


Q ss_pred             hcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecHHH
Q 005867          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE  202 (673)
Q Consensus       123 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (673)
                      ++|++++|+++..+.+++..+++.++++++|++......+...... ......++.+++....     .........|++
T Consensus        72 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  145 (515)
T TIGR03098        72 LAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPG-CHDLRTLILVGEPAHA-----SEGGGESPSWPK  145 (515)
T ss_pred             hcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhc-ccccceEEEecCcccc-----cCCccccccHHH
Confidence            9999999999999999999999999999999988765544332221 1233334444432210     001223345666


Q ss_pred             HHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHH
Q 005867          203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV  282 (673)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~  282 (673)
                      +......  ....+...+++++++|||||||.||+|.++|+++...+......+     .+..+|++++.+|++|.+++.
T Consensus       146 ~~~~~~~--~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~  218 (515)
T TIGR03098       146 LLALGDA--DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL-----ENRPDDRLLAVLPLSFDYGFN  218 (515)
T ss_pred             hhccccc--cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHh-----CCCcccEEEEECchhhHhHHH
Confidence            5543321  122334568899999999999999999999999998888776665     678899999999999999988


Q ss_pred             HhHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCC
Q 005867          283 IEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK  361 (673)
Q Consensus       283 ~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (673)
                      ..+.++..|+++++.+. ++..+.+.++++++|++.++|+++..|.+....                             
T Consensus       219 ~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----------------------------  269 (515)
T TIGR03098       219 QLTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWP-----------------------------  269 (515)
T ss_pred             HHHHHHHcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhcccC-----------------------------
Confidence            88889999999998876 899999999999999999999999887542100                             


Q ss_pred             cCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCCCCccccCCcCC
Q 005867          362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP  440 (673)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~  440 (673)
                                       ...++++|.++++|+++++++.+.+++.+ +..+++.||+||++..............+++|.
T Consensus       270 -----------------~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~  332 (515)
T TIGR03098       270 -----------------ESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGK  332 (515)
T ss_pred             -----------------CCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCcce
Confidence                             00114899999999999999999999988 788999999999987654433322334579999


Q ss_pred             CccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhcc------------CCccccCceEEECCCCc
Q 005867          441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII------------DGWFHTGDIGQILPNGV  508 (673)
Q Consensus       441 ~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~------------~g~~~TGDlg~~~~~G~  508 (673)
                      |++++++++++ +++.  +++.|+.|||+++|+.++.||+++++.+...|.            ++||+|||+|+++++|.
T Consensus       333 ~~~~~~~~i~~-~~~~--~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~  409 (515)
T TIGR03098       333 AIPNAEVLVLR-EDGS--ECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGF  409 (515)
T ss_pred             ecCCCEEEEEC-CCCC--CCCCCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCce
Confidence            99999999999 5554  345678999999999999999999988876652            24899999999999999


Q ss_pred             EEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhc
Q 005867          509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS  585 (673)
Q Consensus       509 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~  585 (673)
                      +++.||.+|+|++ +|.+|+|.+||++|..||.|.+|+|++.+++   +.++++++...+..                .+
T Consensus       410 l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~----------------~~  472 (515)
T TIGR03098       410 LYFVGRRDEMIKT-SGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEE----------------LD  472 (515)
T ss_pred             EEEEeccccceec-CCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCC----------------CC
Confidence            9999999999997 7999999999999999999999999997654   46788877544321                02


Q ss_pred             cHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 005867          586 LVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  655 (673)
Q Consensus       586 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~  655 (673)
                      ..++++++++.                      |+++++|..+++++.      +|+|++||++|++|++
T Consensus       473 ~~~l~~~l~~~----------------------l~~~~~p~~i~~v~~------iP~t~~GK~~r~~L~~  514 (515)
T TIGR03098       473 RAALLAECRAR----------------------LPNYMVPALIHVRQA------LPRNANGKIDRKALAA  514 (515)
T ss_pred             HHHHHHHHHhh----------------------CccccCCCEEEEecc------CCCCCCCCCcHHHhcc
Confidence            23444444443                      999999999999832      3699999999999864

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=4e-60  Score=526.89  Aligned_cols=484  Identities=18%  Similarity=0.188  Sum_probs=363.5

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      ||-+.+.|+.+++++|+++|+++.   +  ++.++++||+||.++++++|++|.+.  ++||+|+++++|++++++++||
T Consensus         1 ~~~~~~~l~~~~~~~~~~~a~~~~---~--~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la   73 (525)
T PRK05851          1 MNELAAALSDAMTASGRDLVVLDR---E--SGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQG   73 (525)
T ss_pred             CchHHHHHHHHhcCCCCceEEeCC---C--CCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHH
Confidence            345889999999999999999864   3  33578999999999999999999987  7999999999999999999999


Q ss_pred             HHhcCCeEeeCCCC-------CChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhC
Q 005867          121 CNALSLICVPLYDT-------LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT  193 (673)
Q Consensus       121 ~~~~G~~~vpl~~~-------~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  193 (673)
                      |+++|+++++++..       ...+++..+++.++++++|+++.....+.....    .    +.+.+            
T Consensus        74 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~----~----~~~~~------------  133 (525)
T PRK05851         74 AWLAGAAVSILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDS----S----VTVHD------------  133 (525)
T ss_pred             HHHcCCCCcCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhc----c----ccccc------------
Confidence            99999986543211       123455677899999999998775544322100    0    00000            


Q ss_pred             CCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCC-CCcEEEEe
Q 005867          194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT-VDDVYLSF  272 (673)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~-~~d~~l~~  272 (673)
                            +.......  ......+..++++++|+|||||||.||||.++|+++.+.+......+     ++. .+|+++++
T Consensus       134 ------~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~d~~l~~  200 (525)
T PRK05851        134 ------LATAAHTN--RSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARV-----GLDAATDVGCSW  200 (525)
T ss_pred             ------cccccccc--ccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCCCCeEEEc
Confidence                  00000000  00011234678999999999999999999999999999988877666     677 89999999


Q ss_pred             cchHhHHHHHHhHHHhhcCcEEEEecC-----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 005867          273 LPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA  347 (673)
Q Consensus       273 ~p~~~~~gl~~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (673)
                      +|++|.+++...+.+++.|+++++.+.     ++..+++.+.++++|++..+|.++..+..... ..             
T Consensus       201 ~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~-~~-------------  266 (525)
T PRK05851        201 LPLYHDMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYAR-RV-------------  266 (525)
T ss_pred             CCCccCccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhc-cc-------------
Confidence            999999999878888999999998763     57789999999999988655554444322110 00             


Q ss_pred             HHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHh---cCC---ceeeecCCCCCC
Q 005867          348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT---CCA---FLVQGYGLTETC  421 (673)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~---~g~---~v~~~YG~tE~~  421 (673)
                                            ...+        +++||.+++||+++++++.++|.+.   +|.   .+++.||+||++
T Consensus       267 ----------------------~~~~--------l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~  316 (525)
T PRK05851        267 ----------------------SDVD--------LGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAEST  316 (525)
T ss_pred             ----------------------cCCC--------HHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhc
Confidence                                  0001        1389999999999999999988764   454   499999999998


Q ss_pred             CcccccCCCC--------------ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhh
Q 005867          422 GPTTVCFPDE--------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR  487 (673)
Q Consensus       422 ~~~~~~~~~~--------------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~  487 (673)
                      ..+.......              ....+++|+|++|++++|+| +++. .+++.|+.|||+++|++++.||+++++.+ 
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~-~~~~~g~~GEl~v~g~~~~~GY~~~~~~~-  393 (525)
T PRK05851        317 CAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISP-GDGA-AGVAGREIGEIEIRGASMMSGYLGQAPID-  393 (525)
T ss_pred             eEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEEC-CCCC-ccCCCCCeEEEEEecCchhhccccCCccC-
Confidence            7655432210              12236799999999999998 5443 34566789999999999999999998654 


Q ss_pred             hhccCCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecCh
Q 005867          488 ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE  564 (673)
Q Consensus       488 ~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~  564 (673)
                         .+|||+|||+|+++ +|.|+++||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.+.++|+...
T Consensus       394 ---~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~  468 (525)
T PRK05851        394 ---PDDWFPTGDLGYLV-DGGLVVCGRAKELITV-AGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEF  468 (525)
T ss_pred             ---CCCceeccceEEEE-CCEEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEEe
Confidence               37899999999996 8999999999999997 8999999999999999999999999986543   24555554431


Q ss_pred             hHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccc--eeeeEEEEecCCCCCCCCcc
Q 005867          565 EDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGF--EHIKGVILDPRPFDMERDLV  642 (673)
Q Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~--~~p~~i~~~~~p~~~~~~p~  642 (673)
                      ...                 +.+++.+.+.+.                      |+.+  ++|..+++++.    +.+|+
T Consensus       469 ~~~-----------------~~~~~~~~~~~~----------------------l~~~l~~~P~~~~~v~~----~~lP~  505 (525)
T PRK05851        469 RGP-----------------DEAGARSEVVQR----------------------VASECGVVPSDVVFVAP----GSLPR  505 (525)
T ss_pred             cCc-----------------chHHHHHHHHHH----------------------HHHHhCCCccEEEEECC----CCcCc
Confidence            110                 223334444443                      4444  78999998851    14579


Q ss_pred             ccccccchHHHHHHHHH
Q 005867          643 TATLKKKRNKLLIYYQV  659 (673)
Q Consensus       643 t~~GKv~R~~l~~~~~~  659 (673)
                      |++||++|++|++.+++
T Consensus       506 t~~GKi~r~~L~~~~~~  522 (525)
T PRK05851        506 TSSGKLRRLAVKRSLEA  522 (525)
T ss_pred             CcchHHHHHHHHHHHHh
Confidence            99999999999987754

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=3.5e-59  Score=523.99  Aligned_cols=511  Identities=23%  Similarity=0.297  Sum_probs=392.3

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCcHhHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAME  119 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~-gv~~gd~V~i~~~~~~e~~~~~l  119 (673)
                      ..++.++|+.+++++|+++|+++.    +     +.+||.||.++++++|.+|.+. |+++||+|+++++|++++++++|
T Consensus        23 ~~~~~~~l~~~~~~~p~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~l   93 (562)
T PRK12492         23 YKSVVEVFERSCKKFADRPAFSNL----G-----VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVF   93 (562)
T ss_pred             cCcHHHHHHHHHHhCCCCeeEecC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            468999999999999999999753    3     4799999999999999999985 99999999999999999999999


Q ss_pred             HHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeC--CCcHHHHHH--------
Q 005867          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT--SLTAEQKEM--------  189 (673)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~--------  189 (673)
                      ||+++|++++|+++..+.+++.++++.++++++++++............  .....++...  +........        
T Consensus        94 a~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (562)
T PRK12492         94 GALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPD--TGIEYLIEAKMGDLLPAAKGWLVNTVVDK  171 (562)
T ss_pred             HHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhc--cCceEEEeechhhccccccchhccccccc
Confidence            9999999999999999999999999999999999987543332211110  0011111000  000000000        


Q ss_pred             -----HhhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccC---
Q 005867          190 -----AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFED---  261 (673)
Q Consensus       190 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~---  261 (673)
                           .........+|.++............+...+++++++|||||||.||+|.++|+++...+......+.....   
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~  251 (562)
T PRK12492        172 VKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQ  251 (562)
T ss_pred             ccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhccccccc
Confidence                 000001223555555443222222334567899999999999999999999999998777665544321110   


Q ss_pred             -CCCC-CcEEEEecchHhHHHHHH-hHHHhhcCcEEEEecC--CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHh
Q 005867          262 -KMTV-DDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE  336 (673)
Q Consensus       262 -~~~~-~d~~l~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~  336 (673)
                       .... .+++++.+|++|.+++.. ++..+..|++.++...  ++..++..++++++|+++++|+++..+.....     
T Consensus       252 ~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-----  326 (562)
T PRK12492        252 PLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPG-----  326 (562)
T ss_pred             ccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcC-----
Confidence             0223 357789999999999865 4445778887766543  88999999999999999999999988754211     


Q ss_pred             hchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecC
Q 005867          337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYG  416 (673)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG  416 (673)
                                                      ....        .++++|.+++||+++++.+.+.|.+.+++++++.||
T Consensus       327 --------------------------------~~~~--------~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG  366 (562)
T PRK12492        327 --------------------------------FKDL--------DFSALKLTNSGGTALVKATAERWEQLTGCTIVEGYG  366 (562)
T ss_pred             --------------------------------cccc--------cccceeEEEeccccCCHHHHHHHHHHhCCceeeccC
Confidence                                            0001        124899999999999999999999988999999999


Q ss_pred             CCCCCCcccccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCcc
Q 005867          417 LTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWF  495 (673)
Q Consensus       417 ~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~  495 (673)
                      +||++.+++..........+++|.|+++++++|++ +++.  +++.|+.|||+++|+.++.||+++++.+...| .+|||
T Consensus       367 ~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~  443 (562)
T PRK12492        367 LTETSPVASTNPYGELARLGTVGIPVPGTALKVID-DDGN--ELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWF  443 (562)
T ss_pred             ccccCceeeecCCcccccCCccceecCCCEEEEEC-CCCC--CCCCCCceEEEEeCCccccccccCchhhhhcccCCCce
Confidence            99999877655443333447899999999999999 6554  44567899999999999999999999998888 57999


Q ss_pred             ccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHH
Q 005867          496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAY  572 (673)
Q Consensus       496 ~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~  572 (673)
                      +|||+|+++++|.+++.||.+|+|++ +|++|+|.+||+.|.+||.|.+++|++.++.   +.+++++++.+...     
T Consensus       444 ~TGD~g~~~~~G~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-----  517 (562)
T PRK12492        444 KTGDIAVIDPDGFVRIVDRKKDLIIV-SGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPGL-----  517 (562)
T ss_pred             ecCcEEEECCCCeEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCCC-----
Confidence            99999999999999999999999997 7999999999999999999999999997654   36777777654210     


Q ss_pred             HcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHH
Q 005867          573 SNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNK  652 (673)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~  652 (673)
                                  ...++.+++.+.                      |+.|.+|..+.+++.      +|+|++||++|++
T Consensus       518 ------------~~~~i~~~~~~~----------------------l~~~~~P~~i~~~~~------~P~t~~GK~~r~~  557 (562)
T PRK12492        518 ------------SVEELKAYCKEN----------------------FTGYKVPKHIVLRDS------LPMTPVGKILRRE  557 (562)
T ss_pred             ------------CHHHHHHHHHHh----------------------cccccCCcEEEEecc------CCCCCCCceeHHH
Confidence                        223344444433                      999999999998832      3699999999999


Q ss_pred             HHHH
Q 005867          653 LLIY  656 (673)
Q Consensus       653 l~~~  656 (673)
                      |++.
T Consensus       558 L~~~  561 (562)
T PRK12492        558 LRDI  561 (562)
T ss_pred             HHhh
Confidence            9864

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=5.7e-59  Score=519.23  Aligned_cols=499  Identities=19%  Similarity=0.201  Sum_probs=395.9

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      +.++.++|+.+|+  ||++|+++.   +      +.+||.||.+++.++|.+|.+.|+++|++|+++++|+++++++++|
T Consensus        24 ~~~~~~~~~~~a~--p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la   92 (536)
T PRK10946         24 DLPLTDILTRHAA--SDAIAVICG---E------RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFA   92 (536)
T ss_pred             CccHHHHHHHhhC--CCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHH
Confidence            5789999998887  999999864   2      5799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhh----hhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCc
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  196 (673)
                      |+++|++++++.+.....++..+++.++++.+++++...    ...........+....++.....             .
T Consensus        93 ~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------~  159 (536)
T PRK10946         93 LLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDD-------------G  159 (536)
T ss_pred             HHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCC-------------C
Confidence            999999888777777778899999999999999986421    11111111112233333333221             1


Q ss_pred             eecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchH
Q 005867          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (673)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~  276 (673)
                      ...+.+++.... ......+..++++++++|||||||.||+|+++|+++...+......+     ++..++++++.+|++
T Consensus       160 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~p~~  233 (536)
T PRK10946        160 EHSLDDAINHPA-EDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----GFTPQTRYLCALPAA  233 (536)
T ss_pred             CccHHHHhhCcc-cccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCceEEEecCcc
Confidence            123344443321 11122345688999999999999999999999999999988776666     788899999999999


Q ss_pred             hHHHHHH--hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 005867          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (673)
Q Consensus       277 ~~~gl~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (673)
                      |.+++..  .+.++..|+++++.+. ++..++..++++++|++.++|.++..++........                  
T Consensus       234 h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~------------------  295 (536)
T PRK10946        234 HNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGS------------------  295 (536)
T ss_pred             ccccchhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCc------------------
Confidence            9888763  5667899999988776 889999999999999999999999888654321100                  


Q ss_pred             HHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCcc
Q 005867          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (673)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~  433 (673)
                                               ....+++|.+++||+++++.+.+.+.+.+|+++++.||+||++............
T Consensus       296 -------------------------~~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~  350 (536)
T PRK10946        296 -------------------------RAQLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDER  350 (536)
T ss_pred             -------------------------cccccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeecCCCcccc
Confidence                                     0011489999999999999999999998999999999999976544322222223


Q ss_pred             ccCCcCCCc-cceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCceEEECCCCcEEE
Q 005867          434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI  511 (673)
Q Consensus       434 ~~~~~G~~~-~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~  511 (673)
                      ..+++|.|+ +++.+++++ +++.  +++.|+.|||+++|+.++.||+++++.+...| .+|||+|||+|++|++|++++
T Consensus       351 ~~~~~G~p~~~~~~v~i~d-~~~~--~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~  427 (536)
T PRK10946        351 IFTTQGRPMSPDDEVWVAD-ADGN--PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITV  427 (536)
T ss_pred             ccccCCcccCCCceEEEEC-CCCC--CCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEEE
Confidence            347899998 789999998 5554  55667899999999999999999999999888 689999999999999999999


Q ss_pred             eecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHH
Q 005867          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  588 (673)
Q Consensus       512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (673)
                      .||.+|+|++ +|++++|.+||++|.+||+|.+++|++.+++   +.+++++++.+..                  +..+
T Consensus       428 ~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~~------------------~~~~  488 (536)
T PRK10946        428 VGREKDQINR-GGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEPL------------------KAVQ  488 (536)
T ss_pred             eccccceeec-CCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCCC------------------CHHH
Confidence            9999999996 8999999999999999999999999997754   3678888876532                  2233


Q ss_pred             HHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 005867          589 LQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  661 (673)
Q Consensus       589 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~  661 (673)
                      +.+        .++++.             ||.|++|..+.+++      .+|+|++||++|++|++++..+.
T Consensus       489 l~~--------~~~~~~-------------l~~~~~P~~~~~~~------~iP~t~~GKv~r~~L~~~~~~~~  534 (536)
T PRK10946        489 LRR--------FLREQG-------------IAEFKLPDRVECVD------SLPLTAVGKVDKKQLRQWLASRA  534 (536)
T ss_pred             HHH--------HHHhCC-------------ccccccCcEEEEec------cCCCCCCCcccHHHHHHHHHhhc
Confidence            333        333234             99999999999983      23699999999999998876643

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1e-58  Score=515.50  Aligned_cols=487  Identities=19%  Similarity=0.218  Sum_probs=384.7

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCcHhHHHHH
Q 005867           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAM  118 (673)
Q Consensus        40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~-gv~~gd~V~i~~~~~~e~~~~~  118 (673)
                      ...++.++|+++|.  ++++|+++.    +     +++||.||.+++.++|.+|++. |++++++|+++++|++++++++
T Consensus         3 ~~~~~~~~l~~~a~--~~~~a~~~~----~-----~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~   71 (529)
T PRK07867          3 SAPTVAELLLPLAE--DDDRGLYFE----D-----SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLL   71 (529)
T ss_pred             ccccHHHHHHHhcc--cCCceEEEC----C-----cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHH
Confidence            34689999988875  789998864    3     5899999999999999999997 8999999999999999999999


Q ss_pred             HHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCcee
Q 005867          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (673)
Q Consensus       119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  198 (673)
                      +||+++|++++|+++..+.+++.++++.++++++|+++.....+....    ... .++..+.                .
T Consensus        72 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~----~~~-~~~~~~~----------------~  130 (529)
T PRK07867         72 GAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD----PGV-RVINVDS----------------P  130 (529)
T ss_pred             HHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc----cCc-eEEEecc----------------c
Confidence            999999999999999999999999999999999999987765442211    111 1222211                1


Q ss_pred             cHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhH
Q 005867          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (673)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~  278 (673)
                      .+.+++..............++++++++|||||||.||+|+++|+++...+..+...+     ++..+|++++.+|++|.
T Consensus       131 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~  205 (529)
T PRK07867        131 AWADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF-----GLGPDDVCYVSMPLFHS  205 (529)
T ss_pred             cHHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh-----CCCcccEEEEecchhHH
Confidence            2444433221111222345778999999999999999999999999998888877666     77889999999999999


Q ss_pred             HHHHH-hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh
Q 005867          279 LDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (673)
Q Consensus       279 ~gl~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (673)
                      +++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+.+..++......                       
T Consensus       206 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~-----------------------  262 (529)
T PRK07867        206 NAVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERP-----------------------  262 (529)
T ss_pred             HHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcc-----------------------
Confidence            99875 4457889999988776 8999999999999999999999988765321100                       


Q ss_pred             hhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCccccC
Q 005867          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVG  436 (673)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~  436 (673)
                                .            ...+++|. ++||+.+++.+ ..|.+.+|.++++.||+||+++.+.....   ...+
T Consensus       263 ----------~------------~~~~~lr~-~~gg~~~~~~~-~~~~~~~g~~l~~~YG~TE~~~~~~~~~~---~~~~  315 (529)
T PRK07867        263 ----------D------------DADNPLRI-VYGNEGAPGDI-ARFARRFGCVVVDGFGSTEGGVAITRTPD---TPPG  315 (529)
T ss_pred             ----------c------------ccccceEE-EecCCCChHHH-HHHHHHhCCcEEEeecccccccccccCCC---CCCC
Confidence                      0            00136774 56888888765 55666779999999999999876553321   2336


Q ss_pred             CcCCCccceeEEEeecCCCCCCCCCCCC------------CceEEE-ecCCccccccCCchhhhhhccCCccccCceEEE
Q 005867          437 TAGPVSVYSELRLEEVPEMGYSPLDDPP------------CGEVCV-RGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI  503 (673)
Q Consensus       437 ~~G~~~~~~~v~i~~~~~~~~~~~~~g~------------~GEl~v-~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~  503 (673)
                      ++|.|+++  +++++.+.+..  ++.++            .|||++ +|++++.||+++++.+...|.+|||+|||+|++
T Consensus       316 ~~g~~~~~--~~i~~~~~~~~--~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~  391 (529)
T PRK07867        316 ALGPLPPG--VAIVDPDTGTE--CPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDLAYR  391 (529)
T ss_pred             CcCCCCCC--EEEEECCCCCC--CCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhhcCCeEeeccEEEE
Confidence            89999998  66666233333  33444            899999 999999999999999999999999999999999


Q ss_pred             CCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcH
Q 005867          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSF  580 (673)
Q Consensus       504 ~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~  580 (673)
                      +++|.+++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.+++++++.++..             
T Consensus       392 ~~~g~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~-------------  457 (529)
T PRK07867        392 DADGYAYFAGRLGDWMRV-DGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAK-------------  457 (529)
T ss_pred             eCCCcEEEeccccCeEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCC-------------
Confidence            999999999999999997 8999999999999999999999999997754   37888888776421             


Q ss_pred             HHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 005867          581 LELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  660 (673)
Q Consensus       581 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~  660 (673)
                         .+..++.+++++.       ..             |+.|++|..+.+++      .+|+|++||++|++|+++...+
T Consensus       458 ---~~~~~l~~~~~~~-------~~-------------l~~~~~P~~i~~~~------~iP~t~~GKv~r~~L~~~~~~~  508 (529)
T PRK07867        458 ---FDPDAFAEFLAAQ-------PD-------------LGPKQWPSYVRVCA------ELPRTATFKVLKRQLSAEGVDC  508 (529)
T ss_pred             ---CCHHHHHHHHHhh-------cc-------------CCcccCCeEEEEee------ccCCCCCcceeHHHHHHhcCCC
Confidence               1233344443321       23             99999999999983      2369999999999999987543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=3.5e-59  Score=567.51  Aligned_cols=506  Identities=22%  Similarity=0.233  Sum_probs=400.4

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHH
Q 005867           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (673)
Q Consensus        39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~  118 (673)
                      ...+++.+.|+.+++++|+++|+++.   ++     +++||+||.++++++|+.|.+ ++++||+|+++++|++++++++
T Consensus       612 ~~~~~l~~~~~~~a~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~  682 (1146)
T PRK08633        612 EALPPLAEAWIDTAKRNWSRLAVADS---TG-----GELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALAN  682 (1146)
T ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEcC---CC-----CcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHH
Confidence            45688999999999999999999853   33     479999999999999999987 4899999999999999999999


Q ss_pred             HHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhccccc-ccccceEEEEeCCCcHHHHHHHhhCCCce
Q 005867          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-SAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (673)
Q Consensus       119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  197 (673)
                      +||+++|++++|+++..+.+++.+++++++++++++++.....+...... .......++..++.....        ...
T Consensus       683 la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~  754 (1146)
T PRK08633        683 LALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKI--------SKV  754 (1146)
T ss_pred             HHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhcccc--------chh
Confidence            99999999999999999999999999999999999998776655321100 111122333333211100        000


Q ss_pred             ecHHHHHhcCccC-----CccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEe
Q 005867          198 YSWDEFLHLGKVN-----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF  272 (673)
Q Consensus       198 ~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~  272 (673)
                      ..+.+........     ........++++++++|||||||.||+|.++|+++...+......+     +...+|++++.
T Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~  829 (1146)
T PRK08633        755 DKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-----NLRNDDVILSS  829 (1146)
T ss_pred             HHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhc-----CCCCCCEEEEc
Confidence            0111111110000     0001345689999999999999999999999999999888877666     67889999999


Q ss_pred             cchHhHHHHHH-hHHHhhcCcEEEEecC--CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 005867          273 LPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY  349 (673)
Q Consensus       273 ~p~~~~~gl~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  349 (673)
                      +|++|.+|+.. .+.++..|+++++.+.  ++..+++.++++++|++.++|++++.+.+.....                
T Consensus       830 ~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------  893 (1146)
T PRK08633        830 LPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLH----------------  893 (1146)
T ss_pred             CcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccC----------------
Confidence            99999999876 6678899999888764  8899999999999999999999998876421100                


Q ss_pred             HHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCC
Q 005867          350 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP  429 (673)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~  429 (673)
                                                   +..++++|.+++||+++++++.+.+++.+|.++++.||+||++++++....
T Consensus       894 -----------------------------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~  944 (1146)
T PRK08633        894 -----------------------------PLMFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLP  944 (1146)
T ss_pred             -----------------------------cccCCCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEecC
Confidence                                         011248999999999999999999999999999999999999887654432


Q ss_pred             CC---------ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccC----Cccc
Q 005867          430 DE---------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID----GWFH  496 (673)
Q Consensus       430 ~~---------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~----g~~~  496 (673)
                      +.         ....+++|.|+|+++++++| ++++ .+++.|+.|||+++|+.++.||+++++.+.+.+.+    |||+
T Consensus       945 ~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~ 1022 (1146)
T PRK08633        945 DVLAADFKRQTGSKEGSVGMPLPGVAVRIVD-PETF-EELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYV 1022 (1146)
T ss_pred             cccccccccccCCCCCCccccCCCCEEEEEc-CCCC-ccCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCeEE
Confidence            21         12347899999999999999 4433 45567789999999999999999999999988877    9999


Q ss_pred             cCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCc--CcceEEEEecCCC---CeEEEEEecChhHHHHHH
Q 005867          497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP--IIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWA  571 (673)
Q Consensus       497 TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p--~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~  571 (673)
                      |||+|++|+||++++.||.||+|++ +|++|+|.+||++|.+||  .+.+|+|++.+++   +.++++++....      
T Consensus      1023 TGD~~~~~~~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~~~------ 1095 (1146)
T PRK08633       1023 TGDKGHLDEDGFLTITDRYSRFAKI-GGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCGAE------ 1095 (1146)
T ss_pred             CCCEEEEcCCceEEEEecccchhhh-CcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecCcc------
Confidence            9999999999999999999999996 899999999999999999  5668999987765   367777776321      


Q ss_pred             HHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchH
Q 005867          572 YSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRN  651 (673)
Q Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~  651 (673)
                                   +.+++++.        +.+++             +|.|++|..+++++      .+|+|++||++|+
T Consensus      1096 -------------~~~~l~~~--------~~~~~-------------l~~~~~P~~i~~~~------~iP~t~~GKi~r~ 1135 (1146)
T PRK08633       1096 -------------DVEELKRA--------IKESG-------------LPNLWKPSRYFKVE------ALPLLGSGKLDLK 1135 (1146)
T ss_pred             -------------CHHHHHHH--------HHhcC-------------CCcccCCcEEEEec------CcCCCCCCCCcHH
Confidence                         22223332        22234             99999999999884      3369999999999


Q ss_pred             HHHHHHHHH
Q 005867          652 KLLIYYQVE  660 (673)
Q Consensus       652 ~l~~~~~~~  660 (673)
                      +|+++..+.
T Consensus      1136 ~L~~~~~~~ 1144 (1146)
T PRK08633       1136 GLKELALAL 1144 (1146)
T ss_pred             HHHHHHHHh
Confidence            999886654

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.3e-59  Score=519.59  Aligned_cols=508  Identities=20%  Similarity=0.216  Sum_probs=393.8

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      ..++.++|.++++++|+++|++..    +     +++||.||.+++.++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus         9 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la   79 (540)
T PRK06164          9 ADTLASLLDAHARARPDAVALIDE----D-----RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLA   79 (540)
T ss_pred             CCCHHHHHHHHHHhCCCCeEEecC----C-----CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            358999999999999999999853    2     4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhh-----hhhhcccccccccceEEEEeCCCcHHHHHHHhhCCC
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  195 (673)
                      |+++|++++|+++..+.+++.++++.++++++|+++...     ..+.............++.++......      ...
T Consensus        80 ~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  153 (540)
T PRK06164         80 CARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADAT------PAP  153 (540)
T ss_pred             HHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccC------CCC
Confidence            999999999999999999999999999999999987642     111111111112233344433111000      000


Q ss_pred             ceecHHHHHhcCccC---CccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEe
Q 005867          196 KPYSWDEFLHLGKVN---EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF  272 (673)
Q Consensus       196 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~  272 (673)
                      ....+.++.......   ........++++++++|||||||.||+|.++|+++...+..+...+     ++..++++++.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~  228 (540)
T PRK06164        154 APGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAY-----GYDPGAVLLAA  228 (540)
T ss_pred             CcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEc
Confidence            000111111100000   0011223568899999999999999999999999999988877776     77899999999


Q ss_pred             cchHhHHHHHHhHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 005867          273 LPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  351 (673)
Q Consensus       273 ~p~~~~~gl~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (673)
                      +|++|.+|+...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+... .                  
T Consensus       229 ~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~-~------------------  289 (540)
T PRK06164        229 LPFCGVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAG-E------------------  289 (540)
T ss_pred             CCchhHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhc-c------------------
Confidence            999999999888888999999988876 89999999999999999999999998865310 0                  


Q ss_pred             HHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcC-CCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCC
Q 005867          352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG-APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD  430 (673)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G-~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~  430 (673)
                                                 ...+++++.+.++| .+....+.+++.+. ++++++.||+||++..++.....
T Consensus       290 ---------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~  341 (540)
T PRK06164        290 ---------------------------RADFPSARLFGFASFAPALGELAALARAR-GVPLTGLYGSSEVQALVALQPAT  341 (540)
T ss_pred             ---------------------------cCCCcceeeeeeccCCcchHHHHHHHhhc-CCceecceeeccccceeeccCCC
Confidence                                       00114788877665 55666677777665 89999999999998876554432


Q ss_pred             C--ccccCCcCCCc-cceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCceEEECCC
Q 005867          431 E--MCMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPN  506 (673)
Q Consensus       431 ~--~~~~~~~G~~~-~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~  506 (673)
                      .  .......|.++ +++.+++++ ++++ .+++.|+.|||||+|++++.||+++++.+...| .+|||+|||+|+++++
T Consensus       342 ~~~~~~~~~~g~~~~~~~~~~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~  419 (540)
T PRK06164        342 DPVSVRIEGGGRPASPEARVRARD-PQDG-ALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGD  419 (540)
T ss_pred             CCCcceeccCccccCCCeEEEEec-CCCC-cCCCCCCeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcCC
Confidence            2  12224567765 799999998 4333 456777899999999999999999999999988 6899999999999999


Q ss_pred             CcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC--CeEEEEEecChhHHHHHHHHcCCCCcHHHHh
Q 005867          507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC  584 (673)
Q Consensus       507 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~  584 (673)
                      |.+++.||.+|+|++ +|.+|+|.+||+.|.+||+|.+++|++.+..  ..+++++++.++..                .
T Consensus       420 g~l~~~GR~~~~i~~-~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~vv~~~~~~----------------~  482 (540)
T PRK06164        420 GQFVYQTRMGDSLRL-GGFLVNPAEIEHALEALPGVAAAQVVGATRDGKTVPVAFVIPTDGAS----------------P  482 (540)
T ss_pred             ceEEEEeecCCeEEE-CCEEcCHHHHHHHHHhCCCceeEEEEecCCCCceeEEEEEEeCCCCC----------------C
Confidence            999999999999997 7999999999999999999999999986532  47888888865420                0


Q ss_pred             ccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCcccccc---ccchHHHHHHHHHHH
Q 005867          585 SLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATL---KKKRNKLLIYYQVEI  661 (673)
Q Consensus       585 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~G---Kv~R~~l~~~~~~~~  661 (673)
                      ..+++.+++++.                      ||.|++|+.+++++      .+|+|++|   |++|+.|++++++.+
T Consensus       483 ~~~~l~~~~~~~----------------------l~~~~~P~~i~~~~------~~P~t~~g~~~Ki~r~~L~~~~~~~~  534 (540)
T PRK06164        483 DEAGLMAACREA----------------------LAGFKVPARVQVVE------AFPVTESANGAKIQKHRLREMAQARL  534 (540)
T ss_pred             CHHHHHHHHHhh----------------------cccCcCCcEEEEec------CCCCCCCCccccccHHHHHHHHHHhh
Confidence            223344444332                      99999999999883      23699999   999999999877654


Q ss_pred             H
Q 005867          662 D  662 (673)
Q Consensus       662 ~  662 (673)
                      .
T Consensus       535 ~  535 (540)
T PRK06164        535 A  535 (540)
T ss_pred             h
Confidence            3

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.2e-58  Score=519.54  Aligned_cols=514  Identities=22%  Similarity=0.282  Sum_probs=396.0

Q ss_pred             CCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHH
Q 005867           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (673)
Q Consensus        38 ~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~  117 (673)
                      +.+++++.++|..+++++|+++|+++.   +      +.+||.||.+++.++|.+|.+.|+++||+|+++++|+++++++
T Consensus        19 ~~~~~~i~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~   89 (557)
T PRK07059         19 ASQYPSLADLLEESFRQYADRPAFICM---G------KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVA   89 (557)
T ss_pred             CCCCCCHHHHHHHHHHHcCCCceEEEc---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHH
Confidence            455689999999999999999999875   3      4799999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCc--HHHHH-------
Q 005867          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT--AEQKE-------  188 (673)
Q Consensus       118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~-------  188 (673)
                      ++||+++|++++|+++..+.+++.++++.++++++|+++.....+......  .....++......  .....       
T Consensus        90 ~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (557)
T PRK07059         90 IAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAK--TAVKHVVVASMGDLLGFKGHIVNFVVR  167 (557)
T ss_pred             HHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcc--cCCceeEEecccccccccccccccccc
Confidence            999999999999999999999999999999999999987654433221111  1112222211000  00000       


Q ss_pred             -HH----hhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhcc-ccCC
Q 005867          189 -MA----VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ-FEDK  262 (673)
Q Consensus       189 -~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~-~~~~  262 (673)
                       ..    .........+.+++..............++++++++|||||||.||+|.++|.+++..+......+.. ....
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~  247 (557)
T PRK07059        168 RVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKK  247 (557)
T ss_pred             cccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhccccccc
Confidence             00    00011233455555443222223345578899999999999999999999999998776544332211 0001


Q ss_pred             -CCCCcEEEEecchHhHHHHHH-hHHHhhcCcEEEEecC--CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhc
Q 005867          263 -MTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR  338 (673)
Q Consensus       263 -~~~~d~~l~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~  338 (673)
                       ......+++.+|++|.+++.. .+.++..|++.++.+.  ++..+++.++++++|.+.++|.++..+.....       
T Consensus       248 ~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~-------  320 (557)
T PRK07059        248 PRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPD-------  320 (557)
T ss_pred             CCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcC-------
Confidence             112457788999999988754 5567788888777664  88999999999999999999999988764211       


Q ss_pred             hHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCC
Q 005867          339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT  418 (673)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~t  418 (673)
                                                    ....++        +++|.++.||+++++.+.+.|.+.+++++++.||+|
T Consensus       321 ------------------------------~~~~~~--------~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~t  362 (557)
T PRK07059        321 ------------------------------FDKLDF--------SKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLS  362 (557)
T ss_pred             ------------------------------cCcCCc--------hhheEEEeccccCCHHHHHHHHHHhCCCeeeccccc
Confidence                                          000111        388999999999999999999998999999999999


Q ss_pred             CCCCcccccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCcccc
Q 005867          419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHT  497 (673)
Q Consensus       419 E~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~T  497 (673)
                      |++.+++...........++|.|++++++++++ +++.  +++.|+.|||+++|+.++.||+++++.+...| .+|||+|
T Consensus       363 E~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~T  439 (557)
T PRK07059        363 ETSPVATCNPVDATEFSGTIGLPLPSTEVSIRD-DDGN--DLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRT  439 (557)
T ss_pred             cccchhhcCCCCCCCcCCcccCccCCcEEEEEC-CCCC--CCCCCCceEEEEeCCccchhhhcCHHHHhhhcccCCceec
Confidence            999876655443333447899999999999998 5554  45667899999999999999999999998877 6899999


Q ss_pred             CceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHc
Q 005867          498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSN  574 (673)
Q Consensus       498 GDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~  574 (673)
                      ||+|+++++|.+++.||.+|+|++ +|++|+|.+||++|.+||+|.+++|++.++.   +.++++++..+...       
T Consensus       440 GDl~~~~~~g~~~~~GR~~~~i~~-~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~~~~-------  511 (557)
T PRK07059        440 GDVGVMDERGYTKIVDRKKDMILV-SGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKDPAL-------  511 (557)
T ss_pred             CcEEEEcCCCcEEEecccccceEE-CCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCCCCC-------
Confidence            999999999999999999999997 7999999999999999999999999986543   46778777654210       


Q ss_pred             CCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 005867          575 GHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  654 (673)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~  654 (673)
                                ...++.+++.+.                      |+.+.+|..+.+++      .+|+|++||++|+.|+
T Consensus       512 ----------~~~~l~~~~~~~----------------------l~~~~~P~~i~~v~------~~P~t~~GK~~r~~L~  553 (557)
T PRK07059        512 ----------TEEDVKAFCKER----------------------LTNYKRPKFVEFRT------ELPKTNVGKILRRELR  553 (557)
T ss_pred             ----------CHHHHHHHHHHh----------------------cccccCCcEEEEec------cCCCCcccceeHHHHH
Confidence                      223344444433                      99999999999983      2359999999999997


Q ss_pred             HH
Q 005867          655 IY  656 (673)
Q Consensus       655 ~~  656 (673)
                      ++
T Consensus       554 ~~  555 (557)
T PRK07059        554 DG  555 (557)
T ss_pred             hh
Confidence            64

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.3e-58  Score=517.32  Aligned_cols=508  Identities=22%  Similarity=0.249  Sum_probs=396.7

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      ..++.++|+.+|+++||+++++..   .  .+..+++||+||.++++++|++|.+.|+++||+|+++++|+++++++++|
T Consensus         9 ~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la   83 (542)
T PRK06018          9 PLLCHRIIDHAARIHGNREVVTRS---V--EGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYG   83 (542)
T ss_pred             CCCHHHHHHHHHHhCCCceEEEee---c--cCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHH
Confidence            359999999999999999999853   1  12347899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecH
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  200 (673)
                      |+++|++++|+++..+.+++.++++.++++.++++......+.+... ..+....++...+....    ..........+
T Consensus        84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  158 (542)
T PRK06018         84 IMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIAD-KLPSVERYVVLTDAAHM----PQTTLKNAVAY  158 (542)
T ss_pred             HHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHh-hCCCccEEEEecccccc----cccCccccccH
Confidence            99999999999999999999999999999999999876655433222 12233344433322100    00001123355


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHH-HH-HhhhhhhhccccCCCCCCcEEEEecchHhH
Q 005867          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA-TF-VSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (673)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~-~~-~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~  278 (673)
                      .++...... ........++++++++|||||||.||+|.++|++.+ .. .......+     ++..+|+++...|++|.
T Consensus       159 ~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~h~  232 (542)
T PRK06018        159 EEWIAEADG-DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-----GTSAADTMLPVVPLFHA  232 (542)
T ss_pred             HHHhccCCc-ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhc-----CCCCCCEEEEecCHHHH
Confidence            665544321 112234567889999999999999999999999743 22 22222233     67889999999999999


Q ss_pred             HHHHHhHHHhhcCcEEEEecC--CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh
Q 005867          279 LDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (673)
Q Consensus       279 ~gl~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (673)
                      +++...+.++..|+++++...  ++..+++.++++++|++.++|+++..+.+......                      
T Consensus       233 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~----------------------  290 (542)
T PRK06018        233 NSWGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEG----------------------  290 (542)
T ss_pred             hhhHHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccC----------------------
Confidence            988777778899999888654  78899999999999999999999998865322110                      


Q ss_pred             hhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCC-----
Q 005867          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-----  431 (673)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~-----  431 (673)
                                     .        ..++||.++++|+++++++.+.|++ ++.++++.||+||++.+++......     
T Consensus       291 ---------------~--------~~~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~  346 (542)
T PRK06018        291 ---------------L--------KLPHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPLGTLAALKPPFSKL  346 (542)
T ss_pred             ---------------C--------CcccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcccccccCccccccC
Confidence                           0        1148999999999999999999999 8999999999999997765432111     


Q ss_pred             -----ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCceEEECC
Q 005867          432 -----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILP  505 (673)
Q Consensus       432 -----~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~  505 (673)
                           .....+.|.|.++++++|++ +++...+.+.+..|||+++|+.++.||+++.   ...+ .+|||+|||++++++
T Consensus       347 ~~~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~---~~~~~~~~~~~TGDl~~~~~  422 (542)
T PRK06018        347 PGDARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEILDDDGFFDTGDVATIDA  422 (542)
T ss_pred             CchhhhhccccCCCCCCCcEEEEEC-CCCCCCCCCCCceeEEEEecCCcchhhhcCc---ccEecCCcEEEcCCEEEEcC
Confidence                 01135789999999999999 6776666655568999999999999999842   2222 578999999999999


Q ss_pred             CCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHH
Q 005867          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLE  582 (673)
Q Consensus       506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~  582 (673)
                      +|++++.||.+|+|++ +|.++++.+||+++.+||+|.+|+|++.+++   +.+.++|++.++..               
T Consensus       423 ~g~~~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---------------  486 (542)
T PRK06018        423 YGYMRITDRSKDVIKS-GGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGET---------------  486 (542)
T ss_pred             CccEEEEecCCCeEEE-CCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCCC---------------
Confidence            9999999999999996 8999999999999999999999999997654   36778887765421               


Q ss_pred             HhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 005867          583 LCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  659 (673)
Q Consensus       583 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~  659 (673)
                       .+..++.+++++.                      |+.|.+|..+.+++      .+|+|++||++|++|+++|.+
T Consensus       487 -~~~~~l~~~~~~~----------------------l~~~~~P~~i~~v~------~iP~t~~GKi~r~~L~~~~~~  534 (542)
T PRK06018        487 -ATREEILKYMDGK----------------------IAKWWMPDDVAFVD------AIPHTATGKILKTALREQFKD  534 (542)
T ss_pred             -CCHHHHHHHHHhh----------------------CccccCCcEEEEec------cCCCCCcchhhHHHHHHHHhc
Confidence             0223344444433                      99999999999983      336999999999999998865

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=2.1e-58  Score=515.61  Aligned_cols=515  Identities=23%  Similarity=0.265  Sum_probs=394.0

Q ss_pred             CCCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHH
Q 005867           37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (673)
Q Consensus        37 ~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~  116 (673)
                      .+..+.++.++|+.+++.+|+++|+++.    +     +.+||.||.++++++|.+|.+.|+.+||+|+++++|++++++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~----~-----~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~   86 (541)
T TIGR03205        16 ATIARGTLPDLLSKAAADYGPRPALEFR----D-----RPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPI   86 (541)
T ss_pred             cCCCCCCHHHHHHHHHHHcCCCceEEEC----C-----cEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHH
Confidence            3445679999999999999999999864    3     479999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhh--hhhhcccccccccceEEEEeCCCcHHHHHH---Hh
Q 005867          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV--KELLSPDCRSAQRLRVMVCFTSLTAEQKEM---AV  191 (673)
Q Consensus       117 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~  191 (673)
                      +++||+++|++++|+++..+.+++.++++.++++++|+++...  ....+... . .....++............   ..
T Consensus        87 ~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~  164 (541)
T TIGR03205        87 NFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLE-K-GLLDRLIVCEDDNWGKVGTPQAPI  164 (541)
T ss_pred             HHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhh-c-ccceEEEEeccccccccccccccc
Confidence            9999999999999999999999999999999999999986321  11111100 0 1112222222211000000   00


Q ss_pred             hCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhcc-ccCCCCCCcEEE
Q 005867          192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ-FEDKMTVDDVYL  270 (673)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~-~~~~~~~~d~~l  270 (673)
                      .......++.++...... ........++++++++|||||||.||+|.++|+++....... ..+.. ........++++
T Consensus       165 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l  242 (541)
T TIGR03205       165 PADPRIVTYADFVKGAAA-PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVI  242 (541)
T ss_pred             CCCcccccHHHHHhcCCC-CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEE
Confidence            011223456666543211 112224567899999999999999999999999987655422 11110 001223457899


Q ss_pred             EecchHhHHHHHH-hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 005867          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (673)
Q Consensus       271 ~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (673)
                      +.+|++|.+++.. ++.++..|+++++... ++..+++.|+++++|++.++|+++..+.+...                 
T Consensus       243 ~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----------------  305 (541)
T TIGR03205       243 CVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPS-----------------  305 (541)
T ss_pred             EeccHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCcc-----------------
Confidence            9999999988765 5567889999888766 99999999999999999999999987753110                 


Q ss_pred             HHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccC
Q 005867          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF  428 (673)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~  428 (673)
                                          ...        ..++++|.+++||+++++++.+++.+.++.++++.||+||++..++...
T Consensus       306 --------------------~~~--------~~~~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~  357 (541)
T TIGR03205       306 --------------------LEK--------RDLSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHP  357 (541)
T ss_pred             --------------------ccc--------cCccccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccCC
Confidence                                000        0114899999999999999999999888999999999999998776554


Q ss_pred             CCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCCc
Q 005867          429 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGV  508 (673)
Q Consensus       429 ~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~  508 (673)
                      .......+++|.|++++.+++.+.+ +...+++.|+.|||+++|++++.||+++++.+.+.|.++||+|||+++++++|+
T Consensus       358 ~~~~~~~~~~G~~~~~~~~~v~~~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~  436 (541)
T TIGR03205       358 PEGPDKPGSIGLMLPGIELDVVSLD-DPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDGY  436 (541)
T ss_pred             CCCCCCCCCcceeccCceeEEEecC-CCCccCCCCCeeEEEEecCCccccccCChhhhHhhhccCCcccCceEEEcCCce
Confidence            3333334789999999999987633 333456667899999999999999999999999999999999999999999999


Q ss_pred             EEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhc
Q 005867          509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS  585 (673)
Q Consensus       509 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~  585 (673)
                      +++.||.+|+|++ +|++|+|.+||+++.+|++|.+++|++.+++   +.+++++++.++...               .+
T Consensus       437 l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---------------~~  500 (541)
T TIGR03205       437 FFLVDRKKDMIIS-GGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKP---------------FS  500 (541)
T ss_pred             EEEEccccCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCCc---------------CC
Confidence            9999999999996 8999999999999999999999999987644   468888887754200               02


Q ss_pred             cHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 005867          586 LVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  654 (673)
Q Consensus       586 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~  654 (673)
                      ..++.+++++.                      |+.|++|..|.+++.      +|+|++||++|++|+
T Consensus       501 ~~~l~~~~~~~----------------------l~~~~~P~~i~~~~~------iP~t~~gK~~r~~l~  541 (541)
T TIGR03205       501 LDELRAFLAGK----------------------LGKHELPVAVEFVDE------LPRTPVGKLSRHELR  541 (541)
T ss_pred             HHHHHHHHHhh----------------------cccccCCcEEEEecc------CCCCcccceeHhhcC
Confidence            23344444333                      999999999999832      369999999999873

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=2.1e-58  Score=518.04  Aligned_cols=518  Identities=23%  Similarity=0.298  Sum_probs=387.6

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHH
Q 005867           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (673)
Q Consensus        42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~  121 (673)
                      .++.+.|+..+..+|+++|+++.    +     ..+||+||.+++.++|.+|.+.|+++||+|+++++|+++++++++||
T Consensus        20 ~~~~~~~~~~~~~~p~~~a~~~~----~-----~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~   90 (567)
T PLN02479         20 LTPLWFLERAAVVHPTRKSVVHG----S-----VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGV   90 (567)
T ss_pred             cCHHHHHHHHHhhCCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Confidence            46889999999999999999864    2     47999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhccccc------ccccceEEEEeCCCcHHHHHHHhhCCC
Q 005867          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR------SAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (673)
Q Consensus       122 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~~~  195 (673)
                      +++|++++|+++..+.+++.++++.++++++|+++............      .......++.+................
T Consensus        91 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (567)
T PLN02479         91 PMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGK  170 (567)
T ss_pred             HhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCcccccccccc
Confidence            99999999999999999999999999999999988765432211100      000112233332211000000000112


Q ss_pred             ceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecch
Q 005867          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (673)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~  275 (673)
                      ....|.+++...............+++++++|||||||.||+|.++|+++..........+     ++..++++++.+|+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~  245 (567)
T PLN02479        171 GAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIW-----GMNEGAVYLWTLPM  245 (567)
T ss_pred             CcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhc-----CCCCCCEEEEecch
Confidence            3445666655432111111223345678899999999999999999999876655444333     67788999999999


Q ss_pred             HhHHHHHHhHH-HhhcCcEEEEecCCHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 005867          276 AHILDRVIEEY-FFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (673)
Q Consensus       276 ~~~~gl~~~~~-~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (673)
                      +|..++...+. .+..|.++++...++..+.+.++++++|+++++|+++..|.+......  .                 
T Consensus       246 ~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--~-----------------  306 (567)
T PLN02479        246 FHCNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSET--I-----------------  306 (567)
T ss_pred             hhhhhHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcc--c-----------------
Confidence            99998765544 456666666554599999999999999999999999998865321100  0                 


Q ss_pred             HhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCC----
Q 005867          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD----  430 (673)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~----  430 (673)
                                               ...++++.++++|+++++.+.+.|.+. +.++++.||+||+++.+......    
T Consensus       307 -------------------------~~~~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~  360 (567)
T PLN02479        307 -------------------------LPLPRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLSETYGPSTVCAWKPEWD  360 (567)
T ss_pred             -------------------------ccccceeEEEEcCCCCCHHHHHHHHhc-CCceecccccccccccccceecccccc
Confidence                                     011488999999999999999998875 89999999999996544322100    


Q ss_pred             ------CccccCCcCCCcccee-EEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEE
Q 005867          431 ------EMCMVGTAGPVSVYSE-LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI  503 (673)
Q Consensus       431 ------~~~~~~~~G~~~~~~~-v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~  503 (673)
                            ......+.|.+.++++ +++++.+.+..++.+.++.|||+++|+.++.|||++++.+...|.+|||+|||+|++
T Consensus       361 ~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDl~~~  440 (567)
T PLN02479        361 SLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVK  440 (567)
T ss_pred             ccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhcCCceecceeEEE
Confidence                  0111135677888875 788773334444444346899999999999999999999999999999999999999


Q ss_pred             CCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcH
Q 005867          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSF  580 (673)
Q Consensus       504 ~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~  580 (673)
                      +++|.++++||.+|+|++ +|++|+|.+||.+|..||.|.+|+|++.+++   +.+++++++..+...            
T Consensus       441 ~~~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~------------  507 (567)
T PLN02479        441 HPDGYIEIKDRSKDIIIS-GGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDK------------  507 (567)
T ss_pred             cCCccEEEeccccceEEe-CCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCcccc------------
Confidence            999999999999999996 8999999999999999999999999997654   378899988764310            


Q ss_pred             HHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 005867          581 LELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  659 (673)
Q Consensus       581 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~  659 (673)
                          ++   .+.+.++|..+++ ++             ||.|+.|+.+.+.+       +|+|++||++|+.|++.+.+
T Consensus       508 ----~~---~~~~~~~l~~~~~-~~-------------l~~~~~P~~~~~~~-------iP~t~~gKv~r~~L~~~~~~  558 (567)
T PLN02479        508 ----SD---EAALAEDIMKFCR-ER-------------LPAYWVPKSVVFGP-------LPKTATGKIQKHVLRAKAKE  558 (567)
T ss_pred             ----cc---hhhhHHHHHHHHH-hh-------------cccccCCceEEecc-------CCCCCccCeeHHHHHHHHHh
Confidence                00   0111223333433 23             99999999887644       35999999999999877544

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-58  Score=511.06  Aligned_cols=473  Identities=22%  Similarity=0.266  Sum_probs=377.3

Q ss_pred             HHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHHHhcCCeE
Q 005867           49 SMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLIC  128 (673)
Q Consensus        49 ~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~  128 (673)
                      +.+++.+||++|+.+.  .++     ..+||.||.+++.++|.+|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus         2 ~~~a~~~p~~~a~~~~--~~~-----~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~   74 (488)
T PRK09088          2 AFHARLQPQRLAAVDL--ALG-----RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIY   74 (488)
T ss_pred             chhhhhCCCceEEEec--CCC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence            4577889999999753  022     579999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecHHHHHhcCc
Q 005867          129 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK  208 (673)
Q Consensus       129 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (673)
                      +|+++..+.+.+.++++.++++++|+++.......           .                     ...++++.....
T Consensus        75 v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-----------~---------------------~~~~~~~~~~~~  122 (488)
T PRK09088         75 VPLNWRLSASELDALLQDAEPRLLLGDDAVAAGRT-----------D---------------------VEDLAAFIASAD  122 (488)
T ss_pred             EeeCccCCHHHHHHHHHhCCCCEEEEcchhhcccc-----------c---------------------ccchhhhhhhcc
Confidence            99999999999999999999999999865432100           0                     011111111110


Q ss_pred             -cCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHH-hHH
Q 005867          209 -VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEY  286 (673)
Q Consensus       209 -~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~-~~~  286 (673)
                       ..........++++++++|||||||.||+|.++|+++...+..+....     .+..++++++.+|++|.+|+.. +..
T Consensus       123 ~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~g~~~~~~~  197 (488)
T PRK09088        123 ALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLG-----RVDAHSSFLCDAPMFHIIGLITSVRP  197 (488)
T ss_pred             ccccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEecchHHHHHHHHHHHH
Confidence             011112234568899999999999999999999999988777665554     5778999999999999999876 445


Q ss_pred             HhhcCcEEEEecC-CHHHHHHHhh--hccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcC
Q 005867          287 FFRRGASVGYYHG-DLNALRDDLM--ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR  363 (673)
Q Consensus       287 ~l~~G~~~v~~~~-~~~~~~~~i~--~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (673)
                      ++..|+++++.+. ++..++..+.  ++++|+++++|+++..+.....                                
T Consensus       198 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~--------------------------------  245 (488)
T PRK09088        198 VLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPG--------------------------------  245 (488)
T ss_pred             HHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcC--------------------------------
Confidence            6888999888766 7888888775  4899999999999987754210                                


Q ss_pred             CcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCC--CccccCCcCCC
Q 005867          364 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--EMCMVGTAGPV  441 (673)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~--~~~~~~~~G~~  441 (673)
                           .+.        ..+++||.+++||++++....+.+.+. |+++++.||+||+++........  .....+++|.|
T Consensus       246 -----~~~--------~~~~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~  311 (488)
T PRK09088        246 -----FDA--------AALRHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIP  311 (488)
T ss_pred             -----cCc--------cccccceEEEecCCCCCHHHHHHHHHh-CCceeeeecccccccccccCCCcccccccCCccccC
Confidence                 000        011489999999999999988887764 89999999999998754332211  12234789999


Q ss_pred             ccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCceEEECCCCcEEEeecCCCeEE
Q 005867          442 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIK  520 (673)
Q Consensus       442 ~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~  520 (673)
                      +++++++|++ +++.  +++.|+.|||+|+|+.++.||+++++.+...| .+|||+|||+|+++++|.+++.||.+|+|+
T Consensus       312 ~~~~~~~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~  388 (488)
T PRK09088        312 TPTVQTRVVD-DQGN--DCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFI  388 (488)
T ss_pred             CCCcEEEEEC-CCCC--CCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEE
Confidence            9999999998 5544  44566899999999999999999999988887 589999999999999999999999999999


Q ss_pred             cCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHH
Q 005867          521 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL  597 (673)
Q Consensus       521 ~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  597 (673)
                      + +|.+++|.+||++|..+|+|.+++|++.+++   +..+++|++.++..                .+..++.+++++. 
T Consensus       389 ~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~----------------~~~~~l~~~~~~~-  450 (488)
T PRK09088        389 S-GGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAP----------------LDLERIRSHLSTR-  450 (488)
T ss_pred             e-CCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCC----------------CCHHHHHHHHHhh-
Confidence            6 8999999999999999999999999997653   46778888765320                0223344444433 


Q ss_pred             HHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 005867          598 KNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  659 (673)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~  659 (673)
                                           |++|++|..|.+++      .+|+|++||++|++|++++.+
T Consensus       451 ---------------------l~~~~~p~~i~~~~------~iP~t~~gKi~r~~l~~~~~~  485 (488)
T PRK09088        451 ---------------------LAKYKVPKHLRLVD------ALPRTASGKLQKARLRDALAA  485 (488)
T ss_pred             ---------------------CcCCCCCCEEEEcc------cCCCCCCCceeHHHHHHHHHh
Confidence                                 99999999999883      346999999999999998875

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.1e-59  Score=525.12  Aligned_cols=501  Identities=20%  Similarity=0.231  Sum_probs=382.6

Q ss_pred             CCCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHH
Q 005867           37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (673)
Q Consensus        37 ~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~  116 (673)
                      .+....++.++|.++++++|+++|+++.   +      +++||+||.+++.++|.+|.+.|+++||+|+++++|++++++
T Consensus        32 ~~~~~~tl~~~l~~~a~~~p~~~Ai~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~  102 (600)
T PRK08279         32 TPDSKRSLGDVFEEAAARHPDRPALLFE---D------QSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLA  102 (600)
T ss_pred             CCCCcccHHHHHHHHHHhCCCCcEEEeC---C------CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHH
Confidence            4456689999999999999999999875   3      479999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCc
Q 005867          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (673)
Q Consensus       117 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  196 (673)
                      ++|||+++|++++|+++.++.+++.++++.++++++|++++....+.+.... ......++..++....          .
T Consensus       103 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~  171 (600)
T PRK08279        103 AWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARAD-LARPPRLWVAGGDTLD----------D  171 (600)
T ss_pred             HHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhh-hcccceEEEecCcccc----------c
Confidence            9999999999999999999999999999999999999998776655332211 1112222222221100          0


Q ss_pred             eecHHHHHhcCccC----CccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEe
Q 005867          197 PYSWDEFLHLGKVN----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF  272 (673)
Q Consensus       197 ~~~~~~~~~~~~~~----~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~  272 (673)
                      ...+.++.......    ........++++++++|||||||.||+|.++|+++.+++..+...+     ++.++|++++.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~l~~~d~~l~~  246 (600)
T PRK08279        172 PEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-----RLTPDDVLYCC  246 (600)
T ss_pred             cccHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhc-----CCCCCcEEEEe
Confidence            11233332211111    1122334678999999999999999999999999999998877666     78899999999


Q ss_pred             cchHhHHHHHHhHH-HhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 005867          273 LPLAHILDRVIEEY-FFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK  350 (673)
Q Consensus       273 ~p~~~~~gl~~~~~-~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (673)
                      +|++|.+++...+. ++..|+++++.+. ++..+++.++++++|++.++|++++.+........                
T Consensus       247 ~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~----------------  310 (600)
T PRK08279        247 LPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPT----------------  310 (600)
T ss_pred             cCchhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCcc----------------
Confidence            99999999886554 5778888888776 89999999999999999999999887754211000                


Q ss_pred             HHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCC-ceeeecCCCCCCCcccccCC
Q 005867          351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFP  429 (673)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~-~v~~~YG~tE~~~~~~~~~~  429 (673)
                                                   ....++|.+  +|+.+++++.+.|.+.++. .+++.||+||++..+... .
T Consensus       311 -----------------------------~~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~-~  358 (600)
T PRK08279        311 -----------------------------DRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV-F  358 (600)
T ss_pred             -----------------------------ccCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc-C
Confidence                                         001366654  4778999999999998876 599999999998644322 1


Q ss_pred             CCccccCCcCCCcc----ceeE---------EEeecCCCCCCCCCCCCCceEE--EecCCccccccCCchhhhhhc----
Q 005867          430 DEMCMVGTAGPVSV----YSEL---------RLEEVPEMGYSPLDDPPCGEVC--VRGKTLFSGYYKNPDLTRESI----  490 (673)
Q Consensus       430 ~~~~~~~~~G~~~~----~~~v---------~i~~~~~~~~~~~~~g~~GEl~--v~gp~~~~gy~~~~~~~~~~~----  490 (673)
                         ...+++|.+.+    +..+         .+.+ .++...+++.|+.|||+  +.|+.++.|| ++++.+...|    
T Consensus       359 ---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~  433 (600)
T PRK08279        359 ---NFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRD-ADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDV  433 (600)
T ss_pred             ---CCCcccccccccccccceeeeeccCcCceeeC-CCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcc
Confidence               12256665554    2222         2222 23333456677899998  7899999999 8888887765    


Q ss_pred             ---cCCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC----CeEEEEEecC
Q 005867          491 ---IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK----SMLVAVVVPC  563 (673)
Q Consensus       491 ---~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~----~~~~a~v~~~  563 (673)
                         .++||+|||+|++++||.+++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++    ...+++++..
T Consensus       434 ~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~-~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~  512 (600)
T PRK08279        434 FKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRW-KGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLA  512 (600)
T ss_pred             cCCCCceEeecceEEEcCCccEEEecccCCeEEE-CCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEec
Confidence               2579999999999999999999999999997 7999999999999999999999999986532    3445555554


Q ss_pred             hhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccc
Q 005867          564 EEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVT  643 (673)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t  643 (673)
                      ++..                .+..++++++++.                      ||.|++|+.|++++      .+|+|
T Consensus       513 ~~~~----------------~~~~~l~~~l~~~----------------------L~~~~~P~~i~~v~------~lP~t  548 (600)
T PRK08279        513 DGAE----------------FDLAALAAHLYER----------------------LPAYAVPLFVRLVP------ELETT  548 (600)
T ss_pred             CCcc----------------CCHHHHHHHHHhh----------------------CccccCCeEEEeec------CCCCC
Confidence            3210                0223444444433                      99999999999983      34699


Q ss_pred             cccccchHHHHHHHHHH
Q 005867          644 ATLKKKRNKLLIYYQVE  660 (673)
Q Consensus       644 ~~GKv~R~~l~~~~~~~  660 (673)
                      ++||++|++|++++.+.
T Consensus       549 ~~GKi~r~~L~~~~~~~  565 (600)
T PRK08279        549 GTFKYRKVDLRKEGFDP  565 (600)
T ss_pred             cchhhhHHHHhhcCCCc
Confidence            99999999999887554

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.6e-58  Score=515.47  Aligned_cols=487  Identities=20%  Similarity=0.198  Sum_probs=378.3

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCcHhHHHHHHH
Q 005867           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA-EPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv-~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      .|+.++|..++  +|+++|+++.    +     ..+||.||.+++.++|..|.+.|+ ++||+|+++++|+++++++++|
T Consensus         3 ~~~~~~l~~~~--~p~~~Al~~~----~-----~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA   71 (540)
T PRK13388          3 DTIAQLLRDRA--GDDTIAVRYG----D-----RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAA   71 (540)
T ss_pred             hhHHHHHHhhc--cCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHH
Confidence            57889998764  7999999864    3     479999999999999999999999 7999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecH
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  200 (673)
                      |+++|++++|++|.++.+++..+++.++++++|+++.....+.+..   .+... ++..+..                .+
T Consensus        72 ~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~~-~i~~~~~----------------~~  131 (540)
T PRK13388         72 AALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD---LPGVR-VLDVDTP----------------AY  131 (540)
T ss_pred             HHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc---ccCce-EEEccch----------------hh
Confidence            9999999999999999999999999999999999887665443221   11222 2222211                12


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHH
Q 005867          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (673)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (673)
                      .+++.... ...+.....++++++++|||||||.||+|.++|+++...+......+     ++..+|++++.+|++|.++
T Consensus       132 ~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  205 (540)
T PRK13388        132 AELVAAAG-ALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERF-----GLTRDDVCYVSMPLFHSNA  205 (540)
T ss_pred             hhhhcccc-CcCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHh-----CCCCCCEEEEeeCchhhcc
Confidence            23322111 11112235679999999999999999999999999998887776666     7888999999999999998


Q ss_pred             HHHhH-HHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhh
Q 005867          281 RVIEE-YFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (673)
Q Consensus       281 l~~~~-~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (673)
                      +...+ .++..|+++++.+. ++..+++.++++++|++..+|..+..+......                          
T Consensus       206 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~--------------------------  259 (540)
T PRK13388        206 VMAGWAPAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPER--------------------------  259 (540)
T ss_pred             hHHHHHHHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCC--------------------------
Confidence            87544 46889999988765 899999999999999999999988776532100                          


Q ss_pred             cCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCccccCCc
Q 005867          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA  438 (673)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~  438 (673)
                              +  .         ....+++.+ + |+.+++.....+.+.+++++++.||+||++.++....   ....+++
T Consensus       260 --------~--~---------~~~~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~---~~~~~~v  315 (540)
T PRK13388        260 --------P--D---------DADNPLRVA-F-GNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVREP---GTPPGSI  315 (540)
T ss_pred             --------c--c---------ccccceEEE-E-CCCCCHHHHHHHHHHhCCceecccccccccceeecCC---CCCCCCC
Confidence                    0  0         001256643 3 5567788888888888999999999999987665432   1234789


Q ss_pred             CCCccceeEEEee---------cCCCCCCCCCCCCCceEEEe-cCCccccccCCchhhhhhccCCccccCceEEECCCCc
Q 005867          439 GPVSVYSELRLEE---------VPEMGYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGV  508 (673)
Q Consensus       439 G~~~~~~~v~i~~---------~~~~~~~~~~~g~~GEl~v~-gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~  508 (673)
                      |.|++++++.-.+         .++++....+.+..|||+++ |+.++.||+++++.+.+.|.+|||+|||+|+++++|+
T Consensus       316 G~p~~g~~i~~~~~~~~~~~~~~d~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~~g~~~TGD~~~~~~dg~  395 (540)
T PRK13388        316 GRGAPGVAIYNPETLTECAVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDADGW  395 (540)
T ss_pred             CCCCCCcEEEcCCCCccccceeccCccccccCCCcceEEEEecCCcccccccCChHHHHHHhhcCceeccceEEEcCCCc
Confidence            9999997653111         01111111233568999998 9999999999999999999899999999999999999


Q ss_pred             EEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhc
Q 005867          509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS  585 (673)
Q Consensus       509 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~  585 (673)
                      +++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.+++++++.++..                .+
T Consensus       396 l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~----------------~~  458 (540)
T PRK13388        396 IYFAGRTADWMRV-DGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGAT----------------FD  458 (540)
T ss_pred             EEEeccCCceEEE-CCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCCc----------------CC
Confidence            9999999999997 8999999999999999999999999997754   36777777765421                02


Q ss_pred             cHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 005867          586 LVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  658 (673)
Q Consensus       586 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~  658 (673)
                      ..++.+++...       ..             |+.|++|..+++++      .+|+|++||++|++|+++..
T Consensus       459 ~~~l~~~l~~~-------~~-------------l~~~~~P~~~~~v~------~iP~t~~GKv~R~~L~~~~~  505 (540)
T PRK13388        459 PDAFAAFLAAQ-------PD-------------LGTKAWPRYVRIAA------DLPSTATNKVLKRELIAQGW  505 (540)
T ss_pred             HHHHHHHHHhh-------cc-------------CCcccCCcEEEEec------cCCCCCcceeeHHhHHHhcc
Confidence            23333333321       23             99999999999873      33699999999999998753

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=1.6e-59  Score=614.79  Aligned_cols=481  Identities=19%  Similarity=0.232  Sum_probs=398.3

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      ..++.++|+.+++++||++|+++.   +      +++||+||.++++++|+.|.+.|+++|++|+|++++++++++++||
T Consensus      3094 ~~~~~~l~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~la 3164 (3956)
T PRK12467       3094 ERLVHQLIEAQVARTPEAPALVFG---D------QQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLA 3164 (3956)
T ss_pred             cccHHHHHHHHHHhCCCcceEeeC---C------cccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHH
Confidence            479999999999999999999975   4      4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecH
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  200 (673)
                      |+++|++++|+++.++.+++.++++.++++++|++......+...      ....++.++...                 
T Consensus      3165 vl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~------~~~~~~~~~~~~----------------- 3221 (3956)
T PRK12467       3165 VLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP------AGDTALTLDRLD----------------- 3221 (3956)
T ss_pred             HHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc------cCCceeeecchh-----------------
Confidence            999999999999999999999999999999999988765443111      001112222110                 


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHH
Q 005867          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (673)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (673)
                          ........+.....++++++++|||||||.||||+++|+++.+.+......+     +++.+|+++++.|++|..+
T Consensus      3222 ----~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~ 3292 (3956)
T PRK12467       3222 ----LNGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAY-----ELDANDRVLLFMSFSFDGA 3292 (3956)
T ss_pred             ----hcccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhc-----CCCcCCEEEEecCccHhHH
Confidence                0000111222345789999999999999999999999999999999888777     7899999999999999999


Q ss_pred             HHHhHHHhhcCcEEEEecC---CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhh
Q 005867          281 RVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (673)
Q Consensus       281 l~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (673)
                      ...++.+|..|+++++.+.   ++..+++.+.++++|++.++|+++..+.+...                          
T Consensus      3293 ~~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~-------------------------- 3346 (3956)
T PRK12467       3293 QERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAG-------------------------- 3346 (3956)
T ss_pred             HHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhccc--------------------------
Confidence            8888999999999999874   78999999999999999999999988754210                          


Q ss_pred             hcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCCCCc----
Q 005867          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEM----  432 (673)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~~~----  432 (673)
                                           ....++||.+++|||++++++.+.|.+.+ ++.++|.||+||++..++.......    
T Consensus      3347 ---------------------~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~ 3405 (3956)
T PRK12467       3347 ---------------------GADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCE 3405 (3956)
T ss_pred             ---------------------ccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccC
Confidence                                 00124899999999999999999998877 6789999999999987665433221    


Q ss_pred             cccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cC-------CccccCceEEEC
Q 005867          433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID-------GWFHTGDIGQIL  504 (673)
Q Consensus       433 ~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~-------g~~~TGDlg~~~  504 (673)
                      ....++|+|++|++++|+| +++.  +++.|+.|||+|+|+++++||+++++.|.+.| .+       +||+|||+|+++
T Consensus      3406 ~~~~~iG~p~~~~~~~v~d-~~~~--~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~ 3482 (3956)
T PRK12467       3406 APYAPIGRPVAGRSIYVLD-GQLN--PVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYR 3482 (3956)
T ss_pred             CCCCCCccccCCCEEEEEC-CCCC--CCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhheec
Confidence            1236899999999999998 5554  56667899999999999999999999999999 33       369999999999


Q ss_pred             CCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCC--CCeEEEEEecChhHHHHHHHHcCCCCcHHH
Q 005867          505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFLE  582 (673)
Q Consensus       505 ~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~  582 (673)
                      +||.++++||.|++||+ +|++|+|.+||++|.+||+|.+|+|++..+  ++.++|+|++.....               
T Consensus      3483 ~dG~l~~~GR~d~~iki-~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~~~~~~lva~v~~~~~~~--------------- 3546 (3956)
T PRK12467       3483 ADGVIEYLGRIDHQVKI-RGFRIELGEIEARLLQHPSVREAVVLARDGAGGKQLVAYVVPADPQG--------------- 3546 (3956)
T ss_pred             CCCcEEEeccccceEee-ceEeecHHHHHHHHhhCcccceEEEEEecCCCCcEEEEEEeCCCCCc---------------
Confidence            99999999999999998 799999999999999999999999998543  358999999876320               


Q ss_pred             HhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 005867          583 LCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  657 (673)
Q Consensus       583 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~  657 (673)
                       ....++++++++         +             ||.|++|..|++++      .+|+|++||++|++|.+.+
T Consensus      3547 -~~~~~l~~~l~~---------~-------------Lp~y~vP~~~~~l~------~lP~t~~GKidR~~L~~~~ 3592 (3956)
T PRK12467       3547 -DWRETLRDHLAA---------S-------------LPDYMVPAQLLVLA------AMPLGPNGKVDRKALPDPD 3592 (3956)
T ss_pred             -ccHHHHHHHHhc---------c-------------CChhhCCCeeeeec------cCCCCCCCccchhhcCCCC
Confidence             012233333332         3             99999999998873      3469999999999997643

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5e-58  Score=515.13  Aligned_cols=512  Identities=23%  Similarity=0.304  Sum_probs=390.7

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (673)
Q Consensus        40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l  119 (673)
                      ..+++.++|..+++.+|+++|+++.    +     +.+||.||..++.++|.+|.+.|+++||+|+++++|++++++++|
T Consensus        22 ~~~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~l   92 (563)
T PRK06710         22 DIQPLHKYVEQMASRYPEKKALHFL----G-----KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYY   92 (563)
T ss_pred             CcccHHHHHHHHHHHCCCceEEEec----C-----eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence            3468999999999999999999874    3     579999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCc--H-HHH---HHHhh-
Q 005867          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT--A-EQK---EMAVQ-  192 (673)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~~~---~~~~~-  192 (673)
                      ||+++|++++|++|..+.+++.++++.++++++++++.....+..... . .....++......  . ...   ..... 
T Consensus        93 A~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (563)
T PRK06710         93 GTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQS-A-TKIEHVIVTRIADFLPFPKNLLYPFVQKK  170 (563)
T ss_pred             HHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccch-h-hccceeEEeccccccccccccccchhhcc
Confidence            999999999999999999999999999999999998865443322111 0 0111111110000  0 000   00000 


Q ss_pred             ---------CCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCC
Q 005867          193 ---------TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM  263 (673)
Q Consensus       193 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~  263 (673)
                               .......|..+.... ..........++++++++|||||||.||+|.++|+++..........+    .+.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~----~~~  245 (563)
T PRK06710        171 QSNLVVKVSESETIHLWNSVEKEV-NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWL----YNC  245 (563)
T ss_pred             cccccccccccchhhhhhhhhhcc-ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhc----cCC
Confidence                     000000122221111 011111112357899999999999999999999999876543322221    022


Q ss_pred             -CCCcEEEEecchHhHHHHHH-hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchH
Q 005867          264 -TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL  340 (673)
Q Consensus       264 -~~~d~~l~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~  340 (673)
                       ..++++++.+|++|.+|+.. ++.+++.|+++++.+. ++..+++.++++++|++.++|+++..+.....         
T Consensus       246 ~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------  316 (563)
T PRK06710        246 KEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPL---------  316 (563)
T ss_pred             CCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCc---------
Confidence             34568899999999998765 4457889999988776 89999999999999999999999988754210         


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCC
Q 005867          341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET  420 (673)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~  420 (673)
                                                  .....+        +++|.+++||+++++++.+++.+.++.++++.||+||+
T Consensus       317 ----------------------------~~~~~~--------~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~  360 (563)
T PRK06710        317 ----------------------------LKEYDI--------SSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTES  360 (563)
T ss_pred             ----------------------------cccCCh--------hhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccC
Confidence                                        000011        38899999999999999999999889999999999999


Q ss_pred             CCcccccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCce
Q 005867          421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDI  500 (673)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDl  500 (673)
                      +..+...........+++|.+++++.+++++ ++++ .+++.|+.|||+++|+.++.||+++++.+...|.+|||+|||+
T Consensus       361 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~  438 (563)
T PRK06710        361 SPVTHSNFLWEKRVPGSIGVPWPDTEAMIMS-LETG-EALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDV  438 (563)
T ss_pred             ccccccCcccccccCCccCCCCCCCeEEEEE-CCCC-ccCCCCCceEEEEecCccchhhhCChHHHhhhcccCcccccce
Confidence            8765443322223347899999999999998 4333 4566678999999999999999999999998889999999999


Q ss_pred             EEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCC
Q 005867          501 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHA  577 (673)
Q Consensus       501 g~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~  577 (673)
                      |+++++|.++++||.+|+|++ +|.+|+|.+||++|.+||.|.+++|++.++.   +.++++|+..++..          
T Consensus       439 ~~~~~~g~~~~~GR~dd~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~----------  507 (563)
T PRK06710        439 GYMDEDGFFYVKDRKKDMIVA-SGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTE----------  507 (563)
T ss_pred             EEEcCCCcEEEeeccccEEEE-CCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCC----------
Confidence            999999999999999999997 7999999999999999999999999997653   47888888765421          


Q ss_pred             CcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 005867          578 GSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  657 (673)
Q Consensus       578 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~  657 (673)
                            .+..++.+++.+         +             |+.|++|..+.+++      .+|+|++||++|++|++++
T Consensus       508 ------~~~~~l~~~~~~---------~-------------l~~~~~P~~~~~v~------~iP~t~~GKi~r~~L~~~~  553 (563)
T PRK06710        508 ------CSEEELNQFARK---------Y-------------LAAYKVPKVYEFRD------ELPKTTVGKILRRVLIEEE  553 (563)
T ss_pred             ------CCHHHHHHHHHH---------h-------------cccccCCcEEEEcc------cCCCCccchhhHHHHHHHH
Confidence                  022334444333         2             99999999988883      3369999999999999877


Q ss_pred             HH
Q 005867          658 QV  659 (673)
Q Consensus       658 ~~  659 (673)
                      ..
T Consensus       554 ~~  555 (563)
T PRK06710        554 KR  555 (563)
T ss_pred             hh
Confidence            54

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=1.2e-58  Score=568.42  Aligned_cols=481  Identities=21%  Similarity=0.232  Sum_probs=393.6

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      ..++.++|..+++++||++|+++.   +      +.+||+||.+++.++|+.|.+.|+++||+|++++++++++++++||
T Consensus       457 ~~~l~~~~~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la  527 (1296)
T PRK10252        457 ETTLSALVAQQAAKTPDAPALADA---R------YQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHA  527 (1296)
T ss_pred             cCCHHHHHHHHHHhCCCCeEEEcC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            368999999999999999999864   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecH
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  200 (673)
                      |+++|++++|+++.++.+++.++++.+++++++++......+...     .... +....                    
T Consensus       528 ~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~-----~~~~-~~~~~--------------------  581 (1296)
T PRK10252        528 IVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV-----PDLT-SLCYN--------------------  581 (1296)
T ss_pred             HHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC-----CCce-eeecc--------------------
Confidence            999999999999999999999999999999999988765443211     0110 11111                    


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHH
Q 005867          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (673)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (673)
                       .....  ....+.....++++++++|||||||.||||.++|+++.+.+.+....+     ++..+|++++..|++|..+
T Consensus       582 -~~~~~--~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~  653 (1296)
T PRK10252        582 -APLAP--QGAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY-----PLTADDVVLQKTPCSFDVS  653 (1296)
T ss_pred             -ccccc--ccCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEEEEeCCcchhhh
Confidence             00000  001111233678999999999999999999999999999998887777     7889999999999999999


Q ss_pred             HHHhHHHhhcCcEEEEecC----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh
Q 005867          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (673)
Q Consensus       281 l~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (673)
                      +..++.++..|+++++.+.    ++..+.+.++++++|++.++|+++..+.+.......                     
T Consensus       654 ~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~---------------------  712 (1296)
T PRK10252        654 VWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGA---------------------  712 (1296)
T ss_pred             HHHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccc---------------------
Confidence            8888899999999999763    889999999999999999999999887653211100                     


Q ss_pred             hhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCC-----
Q 005867          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-----  431 (673)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~-----  431 (673)
                                            ...++++|.+++||+++++++.+.|.+.++++++|.||+||++..++......     
T Consensus       713 ----------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~  770 (1296)
T PRK10252        713 ----------------------RQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAA  770 (1296)
T ss_pred             ----------------------cccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeecccccccc
Confidence                                  00114899999999999999999999888999999999999987766543322     


Q ss_pred             -ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhcc-------CCccccCceEEE
Q 005867          432 -MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQI  503 (673)
Q Consensus       432 -~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~-------~g~~~TGDlg~~  503 (673)
                       .....++|.|+++++++|+| +.+.  +++.|+.|||+|+|+.++.||+++++.|.+.|.       ++||+|||+|++
T Consensus       771 ~~~~~~~iG~p~~~~~~~i~d-~~~~--~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~  847 (1296)
T PRK10252        771 VRGSSVPIGYPVWNTGLRILD-ARMR--PVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARW  847 (1296)
T ss_pred             cCCCCCCcccccCCCEEEEEC-CCCC--CCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEE
Confidence             12236799999999999998 5554  456678999999999999999999999999882       249999999999


Q ss_pred             CCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEec-------C--CCCeEEEEEecChhHHHHHHHHc
Q 005867          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGD-------S--LKSMLVAVVVPCEEDTKKWAYSN  574 (673)
Q Consensus       504 ~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~-------~--~~~~~~a~v~~~~~~~~~~~~~~  574 (673)
                      ++||.++++||.|++||+ +|++|++.+||++|.+||+|.+|+|+..       .  +...++++|+...+..       
T Consensus       848 ~~~G~l~~~GR~d~~ik~-~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~~-------  919 (1296)
T PRK10252        848 LDDGAVEYLGRSDDQLKI-RGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLP-------  919 (1296)
T ss_pred             cCCCcEEEecccCCeEEE-eeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCCCC-------
Confidence            999999999999999998 7999999999999999999999987653       1  1237999999865320       


Q ss_pred             CCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 005867          575 GHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  654 (673)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~  654 (673)
                               .+..++++++.+.                      ||.|++|..++.++      .+|+|++||++|++|.
T Consensus       920 ---------~~~~~l~~~l~~~----------------------Lp~~~~P~~~~~~~------~lP~t~~GKidr~~L~  962 (1296)
T PRK10252        920 ---------LDTSALQAQLRER----------------------LPPHMVPVVLLQLD------QLPLSANGKLDRKALP  962 (1296)
T ss_pred             ---------CCHHHHHHHHHhh----------------------CchhcCCcEEEEec------CCCCCCCcChhHHhcC
Confidence                     0223444444433                      99999999998883      3369999999999986


Q ss_pred             H
Q 005867          655 I  655 (673)
Q Consensus       655 ~  655 (673)
                      +
T Consensus       963 ~  963 (1296)
T PRK10252        963 L  963 (1296)
T ss_pred             C
Confidence            5

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9.7e-58  Score=512.48  Aligned_cols=515  Identities=21%  Similarity=0.270  Sum_probs=394.9

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHhHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAME  119 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~-~gv~~gd~V~i~~~~~~e~~~~~l  119 (673)
                      +.++.++|+.+|+++|+++|+++.    +     +.+||.||.++++++|.+|.. .|+++|++|+++++|++++++++|
T Consensus        22 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l   92 (560)
T PRK08974         22 YQSLVDMFEQAVARYADQPAFINM----G-----EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALF   92 (560)
T ss_pred             cccHHHHHHHHHHhCCCCceEEEC----C-----ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            468999999999999999999864    3     479999999999999999984 799999999999999999999999


Q ss_pred             HHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcH--HHHH---------
Q 005867          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA--EQKE---------  188 (673)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~---------  188 (673)
                      ||+++|++++|+++..+.+.+.++++.++++++++++.....+......  .....++.......  ....         
T Consensus        93 A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (560)
T PRK08974         93 GILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFK--TPVKHVILTRMGDQLSTAKGTLVNFVVKY  170 (560)
T ss_pred             HHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhh--cCcceEEEecccccccccccccccchhhh
Confidence            9999999999999999999999999999999999987654433221110  11111111110000  0000         


Q ss_pred             ----HHhhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCC
Q 005867          189 ----MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT  264 (673)
Q Consensus       189 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~  264 (673)
                          ..........++.+................++++++++|||||||.||+|.++|.++...+......+..  ....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~--~~~~  248 (560)
T PRK08974        171 IKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGP--LLHP  248 (560)
T ss_pred             cccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhcc--ccCC
Confidence                0000000112223332222111111223467899999999999999999999999998876544332211  0133


Q ss_pred             CCcEEEEecchHhHHHHHH-hHHHhhcCcEEEEecC--CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHH
Q 005867          265 VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR  341 (673)
Q Consensus       265 ~~d~~l~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~  341 (673)
                      .++.++..+|++|.+++.. .+.++..|+++++...  ++..++..++++++|.+.++|+++..+......         
T Consensus       249 ~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~---------  319 (560)
T PRK08974        249 GKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEF---------  319 (560)
T ss_pred             CccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCc---------
Confidence            4677889999999998765 4556788888777654  888999999999999999999999887642100         


Q ss_pred             HHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCC
Q 005867          342 RRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC  421 (673)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~  421 (673)
                                                  ...        .++++|.+++||+++++.+.+.|++.+|+++++.||+||++
T Consensus       320 ----------------------------~~~--------~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~  363 (560)
T PRK08974        320 ----------------------------QEL--------DFSSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECS  363 (560)
T ss_pred             ----------------------------ccC--------CccceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccC
Confidence                                        000        11489999999999999999999998899999999999999


Q ss_pred             CcccccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceE
Q 005867          422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG  501 (673)
Q Consensus       422 ~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg  501 (673)
                      ..++....+.....+++|.|++++++++++ +++  .+++.|+.|||+++|+.++.||+++++.+...|.+|||+|||++
T Consensus       364 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~--~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~  440 (560)
T PRK08974        364 PLVSVNPYDLDYYSGSIGLPVPSTEIKLVD-DDG--NEVPPGEPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIA  440 (560)
T ss_pred             ceeeccCCCCcccCCccccCcCCCEEEEEC-CCC--CCCCCCCceEEEEecCCcchhhcCChhhhhhhhhcCCcccCCEE
Confidence            877665544334457899999999999998 554  35566789999999999999999999999988889999999999


Q ss_pred             EECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCC
Q 005867          502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAG  578 (673)
Q Consensus       502 ~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~  578 (673)
                      +++++|.++++||.+|+|++ +|.+++|.+||++|.+||+|.+++|++.++.   +.++++++..+...           
T Consensus       441 ~~~~~g~l~i~GR~~d~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~-----------  508 (560)
T PRK08974        441 VMDEEGFLRIVDRKKDMILV-SGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDPSL-----------  508 (560)
T ss_pred             EEcCCceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCCCCC-----------
Confidence            99999999999999999997 7999999999999999999999999986654   25666665543210           


Q ss_pred             cHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 005867          579 SFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  658 (673)
Q Consensus       579 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~  658 (673)
                            ..+++++++.+.                      |+.|++|..+.+++      .+|+|++||++|+.|+++..
T Consensus       509 ------~~~~l~~~l~~~----------------------l~~~~~P~~~~~~~------~lP~t~~GK~~r~~l~~~~~  554 (560)
T PRK08974        509 ------TEEELITHCRRH----------------------LTGYKVPKLVEFRD------ELPKSNVGKILRRELRDEAR  554 (560)
T ss_pred             ------CHHHHHHHHHhh----------------------cccccCCcEEEEhh------hCCCCCCCcEeHHHHHHHHH
Confidence                  223344444433                      99999999999883      33699999999999999988


Q ss_pred             HHHH
Q 005867          659 VEID  662 (673)
Q Consensus       659 ~~~~  662 (673)
                      ++++
T Consensus       555 ~~~~  558 (560)
T PRK08974        555 AKVD  558 (560)
T ss_pred             hhhc
Confidence            8765

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=4.9e-59  Score=495.64  Aligned_cols=515  Identities=20%  Similarity=0.237  Sum_probs=410.3

Q ss_pred             CCCCCcHH-HHHHHHHHh-CCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHH
Q 005867           38 DSDLNTAW-DIFSMSVQK-YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV  115 (673)
Q Consensus        38 ~~~~~tl~-~~l~~~a~~-~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~  115 (673)
                      +..+.++. .+++++.+. .+|.+++++.   +..++....+||.|+.+.+.++|+.|.+.|+++||+|++++|+.++++
T Consensus        59 ~g~~ln~~~n~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~  135 (626)
T KOG1175|consen   59 PGAFLNACYNCLDRHIKEKGGDKVAIIFE---GNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAV  135 (626)
T ss_pred             ccchhhhhHhhhhhhhhhcCCCCcEEEEE---ecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHH
Confidence            34444444 445555444 4899999987   444444455999999999999999999889999999999999999999


Q ss_pred             HHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccc-----c-------ccceEEEEeCCCc
Q 005867          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS-----A-------QRLRVMVCFTSLT  183 (673)
Q Consensus       116 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-----~-------~~~~~v~~~~~~~  183 (673)
                      ++++||.++|++.+++-...+++++...+..++++++++.+.............     .       ......+..... 
T Consensus       136 ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-  214 (626)
T KOG1175|consen  136 IAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRR-  214 (626)
T ss_pred             HHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecc-
Confidence            999999999999999999999999999999999999999885433221111100     0       000001011100 


Q ss_pred             HHHHHHHhhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHH-HHHHhhhhhhhccccCC
Q 005867          184 AEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFLDQFEDK  262 (673)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l-~~~~~~~~~~~~~~~~~  262 (673)
                                 .....|++++..... ..++...+.+|+.+|+|||||||.||++.+++... +..+.....++     +
T Consensus       215 -----------~~d~~~~~~~~~a~~-~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~-----d  277 (626)
T KOG1175|consen  215 -----------NRDLFWSLELKKASP-EHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHF-----D  277 (626)
T ss_pred             -----------cccccHHHHhhhcCC-CCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceec-----c
Confidence                       013356666555533 33377789999999999999999999998888754 44455545455     8


Q ss_pred             CCCCcEEEEecchHhHHHHHH-hHHHhhcCcEEEEecC---CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhc
Q 005867          263 MTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR  338 (673)
Q Consensus       263 ~~~~d~~l~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~  338 (673)
                      ++++|+++++....|+.+... .+.+|..|+++++++.   ++..+++.+.++++|.+++.|+.++.+.+........  
T Consensus       278 ~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~--  355 (626)
T KOG1175|consen  278 LQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTS--  355 (626)
T ss_pred             CCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccc--
Confidence            999999999999999999886 5568999999999886   8899999999999999999999999875533222111  


Q ss_pred             hHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCC-ceeeecCC
Q 005867          339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGL  417 (673)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~-~v~~~YG~  417 (673)
                                                       .++        ++||++.++||++.++..+++.+.++. +|.+.||+
T Consensus       356 ---------------------------------~~~--------~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~q  394 (626)
T KOG1175|consen  356 ---------------------------------YSL--------KSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQ  394 (626)
T ss_pred             ---------------------------------ccc--------ceEEEEeecCccCCcchHHHHHHhcCccchhhceee
Confidence                                             111        289999999999999999999999987 79999999


Q ss_pred             CCCCCcccccCCCC-ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecC---CccccccCCchhhhhhc---
Q 005867          418 TETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESI---  490 (673)
Q Consensus       418 tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp---~~~~gy~~~~~~~~~~~---  490 (673)
                      ||+|+.+..+.... ...+++.+.|++|+.+.|.| +++...+... +.|+|+++.+   +++++||+|++.....+   
T Consensus       395 tEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-e~g~~~~~~~-~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k  472 (626)
T KOG1175|consen  395 TETGGICITPKPGKLPIKPGSAGKPFPGYDVQILD-ENGNELPPST-GNGELRLKPPWPPGMFRTLWGNHERFRAAYFKK  472 (626)
T ss_pred             eccCceeeeccCCCCCcCccccCCCCCCcceEEEC-CCCCCcCCCC-ceeEEEEeCCCCccccccccCCHHHhhhhhccc
Confidence            99999988888777 66779999999999999999 6655554443 7899999874   67899999999666665   


Q ss_pred             cCCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHH
Q 005867          491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDT  567 (673)
Q Consensus       491 ~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~  567 (673)
                      ..|+|.|||.|++|+||++++.||.||+||+ +|+++.+.|||+++.+||.|.|++|++.+++   +.+.|||+++++..
T Consensus       473 ~pg~y~tGD~~~rd~dGY~~i~GR~DDviNv-sGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~  551 (626)
T KOG1175|consen  473 FPGYYFTGDGGRRDEDGYYWILGRVDDVINV-SGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSH  551 (626)
T ss_pred             CCceEEecCceEEcCCceEEEEecccccccc-cceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCCC
Confidence            3799999999999999999999999999997 7999999999999999999999999998765   58999999998742


Q ss_pred             HHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccc
Q 005867          568 KKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLK  647 (673)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GK  647 (673)
                                       ..+++.+.|.+.|+     ++             +.++..|+.|.+++.      ||+|.+||
T Consensus       552 -----------------~~~~L~kel~~~VR-----~~-------------igp~a~P~~I~~v~~------LPkTrSGK  590 (626)
T KOG1175|consen  552 -----------------DPEQLTKELVKHVR-----SV-------------IGPYAVPRLIVFVPG------LPKTRSGK  590 (626)
T ss_pred             -----------------ChHHHHHHHHHHHH-----hh-------------cCcccccceeEecCC------CCccccch
Confidence                             34445544444444     34             889999999999932      25999999


Q ss_pred             cchHHHHHHHHHH
Q 005867          648 KKRNKLLIYYQVE  660 (673)
Q Consensus       648 v~R~~l~~~~~~~  660 (673)
                      +.|+.|++....+
T Consensus       591 imRr~lrki~~g~  603 (626)
T KOG1175|consen  591 IMRRALRKIASGK  603 (626)
T ss_pred             hHHHHHHHHhccC
Confidence            9999999987654

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=4e-58  Score=509.23  Aligned_cols=484  Identities=18%  Similarity=0.207  Sum_probs=386.3

Q ss_pred             cHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHHH
Q 005867           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN  122 (673)
Q Consensus        43 tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~~  122 (673)
                      ++.+.|.+.|+.+|+++|+...    +     +++||+||.+++.++|..|.+.|+++|++|+++++|+.++++++|||+
T Consensus         1 ~~~~~l~~~a~~~p~~~a~~~~----~-----~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~   71 (502)
T TIGR01734         1 KLIEAIQAFAETYPQTIAYRYQ----G-----QELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSI   71 (502)
T ss_pred             CHHHHHHHHHHHCCCceEEEcC----C-----cEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHH
Confidence            5789999999999999998764    3     589999999999999999999999999999999999999999999999


Q ss_pred             hcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecHHH
Q 005867          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE  202 (673)
Q Consensus       123 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (673)
                      ++|++++|+++.++.+.+.++++..+++.+++++........        .. ++.++.                  ...
T Consensus        72 ~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~--------~~-~~~~~~------------------~~~  124 (502)
T TIGR01734        72 KSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG--------TQ-IITLSA------------------LEQ  124 (502)
T ss_pred             HhCCEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccccC--------Cc-eEEchH------------------hhh
Confidence            999999999999999999999999999999998764332211        11 111111                  111


Q ss_pred             HHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHH
Q 005867          203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV  282 (673)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~  282 (673)
                      +.... ..........++++++++|||||||.||+|.++|.++...+......+     ....++++++.+|++|..++.
T Consensus       125 ~~~~~-~~~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~  198 (502)
T TIGR01734       125 AETSG-GPVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADF-----PLSEGKQFLNQAPFSFDLSVM  198 (502)
T ss_pred             hhhhc-CCccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhC-----CCCCCceEEeecCceechhHH
Confidence            11111 111112234678899999999999999999999999999888776655     678899999999999999988


Q ss_pred             HhHHHhhcCcEEEEecC----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhh
Q 005867          283 IEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (673)
Q Consensus       283 ~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (673)
                      .++.++..|+++++.+.    ++..+++.+.+++++.+.++|.++..++......                         
T Consensus       199 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~-------------------------  253 (502)
T TIGR01734       199 DLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFN-------------------------  253 (502)
T ss_pred             HHHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccc-------------------------
Confidence            88889999999998774    7889999999999999999999987654321000                         


Q ss_pred             cCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCCC----Ccc
Q 005867          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD----EMC  433 (673)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~----~~~  433 (673)
                                          ....++++.++++|+++++++.+.+.+.+ ++++++.||+||+++.+......    ...
T Consensus       254 --------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~  313 (502)
T TIGR01734       254 --------------------QENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQY  313 (502)
T ss_pred             --------------------cccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccC
Confidence                                01124899999999999999999998887 78999999999988644432211    122


Q ss_pred             ccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhcc--C--CccccCceEEECCCCcE
Q 005867          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--D--GWFHTGDIGQILPNGVV  509 (673)
Q Consensus       434 ~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~--~--g~~~TGDlg~~~~~G~l  509 (673)
                      ...++|.++++++++|++ +++.  +++.|+.|||+++|+.++.||+++++.+...|.  +  +||+|||+|++|++ ++
T Consensus       314 ~~~~vg~~~~~~~~~i~~-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l  389 (502)
T TIGR01734       314 PRLPIGFAKPDMNLFIMD-EEGE--PLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QL  389 (502)
T ss_pred             CccccccccCCCEEEEEC-CCCC--CCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC-EE
Confidence            235799999999999999 5544  455678999999999999999999999888772  2  59999999999966 99


Q ss_pred             EEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecC--CC--CeEEEEEecChhHHHHHHHHcCCCCcHHHHhc
Q 005867          510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDS--LK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS  585 (673)
Q Consensus       510 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~--~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~  585 (673)
                      ++.||.+|+|++ +|++|+|.+||+++.++|+|.+|+|++..  +.  +.++++|++......                .
T Consensus       390 ~i~GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~----------------~  452 (502)
T TIGR01734       390 FYQGRLDFQIKL-HGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFE----------------K  452 (502)
T ss_pred             EEeccccCeEEE-CcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccccc----------------c
Confidence            999999999997 89999999999999999999999999843  22  478888887764210                1


Q ss_pred             cHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 005867          586 LVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  658 (673)
Q Consensus       586 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~  658 (673)
                      ...+.+.+.+    .+. ++             ||+|++|+.+++++      .+|+|++||++|++|++++.
T Consensus       453 ~~~~~~~i~~----~~~-~~-------------l~~~~~P~~~~~v~------~lP~t~~gKv~r~~l~~~~~  501 (502)
T TIGR01734       453 EFQLTKAIKK----ELK-KS-------------LPAYMIPRKFIYRD------QLPLTANGKIDRKALAEEVN  501 (502)
T ss_pred             chhhHHHHHH----HHh-hh-------------ChhhcCCcEEEEcc------ccCCCCCCcccHHHHHHhhc
Confidence            1122222333    322 12             99999999999984      33699999999999998763

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=1.3e-57  Score=511.62  Aligned_cols=510  Identities=23%  Similarity=0.302  Sum_probs=392.7

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAME  119 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~-~~gv~~gd~V~i~~~~~~e~~~~~l  119 (673)
                      ..++.++|..+++.+|+++|+++.    +     +.+||.||.+++.++|..|+ +.|+++||+|+++++|++++++++|
T Consensus        24 ~~~~~~~l~~~~~~~~~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l   94 (560)
T PRK08751         24 FRTVAEVFATSVAKFADRPAYHSF----G-----KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATF   94 (560)
T ss_pred             CCcHHHHHHHHHHhCCCCceEEEC----C-----ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence            468999999999999999999864    3     57999999999999999997 6799999999999999999999999


Q ss_pred             HHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCc--H-HHH--------H
Q 005867          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT--A-EQK--------E  188 (673)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~~~--------~  188 (673)
                      ||+++|++++|++|.++.+++.+++..++++++++++.....+...... . ....++......  . ...        .
T Consensus        95 A~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (560)
T PRK08751         95 GVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIAD-T-PVKQVITTGLGDMLGFPKAALVNFVVKY  172 (560)
T ss_pred             HHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhC-C-CccEEEEechhhhcccccchhhhhhhhh
Confidence            9999999999999999999999999999999999988765544322211 1 112222211000  0 000        0


Q ss_pred             ----HHhhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCC
Q 005867          189 ----MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT  264 (673)
Q Consensus       189 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~  264 (673)
                          ...........+.+................++++++++|||||||.||+|.++|.++...+......+.... .+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~-~~~  251 (560)
T PRK08751        173 VKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTG-KLE  251 (560)
T ss_pred             hhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhcccc-ccC
Confidence                000000122334444443322222233457789999999999999999999999999887776554441110 123


Q ss_pred             C-CcEEEEecchHhHHHHHH-hHHHhhcCcEEEEecC--CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchH
Q 005867          265 V-DDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL  340 (673)
Q Consensus       265 ~-~d~~l~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~  340 (673)
                      . .+++++.+|++|.+++.. .+.++..|+++++...  ++..+++.++++++|++.++|.++..+.+...         
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~---------  322 (560)
T PRK08751        252 EGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPG---------  322 (560)
T ss_pred             CCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcC---------
Confidence            3 357788899999999764 4556677777766554  88999999999999999999999988754210         


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCC
Q 005867          341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET  420 (673)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~  420 (673)
                                                  .+.+++        ++||.+++||+++++.+.+.|++.+|+++++.||+||+
T Consensus       323 ----------------------------~~~~~l--------~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~  366 (560)
T PRK08751        323 ----------------------------FDQIDF--------SSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTET  366 (560)
T ss_pred             ----------------------------cCCcch--------hhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccC
Confidence                                        011111        38999999999999999999999889999999999999


Q ss_pred             CCcccccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCc
Q 005867          421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGD  499 (673)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGD  499 (673)
                      +..++..........+++|.|++++++++++ +++.  +++.++.|||+++|+.++.||+++++.+...| .+|||+|||
T Consensus       367 ~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD  443 (560)
T PRK08751        367 SPAACINPLTLKEYNGSIGLPIPSTDACIKD-DAGT--VLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGD  443 (560)
T ss_pred             CCceecccccccccCCCcCccCCCceEEEEC-CCCC--CCCCCCceEEEEecCccchhhcCChhhhhhccccCCCccccc
Confidence            9876655433333447899999999999999 5554  45566899999999999999999999988887 679999999


Q ss_pred             eEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCC
Q 005867          500 IGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGH  576 (673)
Q Consensus       500 lg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~  576 (673)
                      +|+++++|.+++.||.+|+|++ +|.+|+|.+||++|..||+|.+|+|++.++.   +.+.++++......         
T Consensus       444 ~~~~~~~g~l~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~~~~---------  513 (560)
T PRK08751        444 IARMDEQGFVYIVDRKKDMILV-SGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDPAL---------  513 (560)
T ss_pred             eEEEcCCceEEEEeechhheeE-CCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcCCCCC---------
Confidence            9999999999999999999997 7999999999999999999999999997654   35666666543210         


Q ss_pred             CCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 005867          577 AGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  656 (673)
Q Consensus       577 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~  656 (673)
                              +..++.+++.+.                      |+.|++|..+.+++      .+|+|++||++|++|++.
T Consensus       514 --------~~~~l~~~~~~~----------------------l~~~~~P~~v~~v~------~lP~t~~gKv~r~~L~~~  557 (560)
T PRK08751        514 --------TAEDVKAHARAN----------------------LTGYKQPRIIEFRK------ELPKTNVGKILRRELRDA  557 (560)
T ss_pred             --------CHHHHHHHHHHh----------------------hhhccCCeEEEEhh------hCCCCccccccHHHHHHh
Confidence                    223344444433                      99999999999883      336999999999999876

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=9.6e-58  Score=506.66  Aligned_cols=498  Identities=22%  Similarity=0.215  Sum_probs=395.3

Q ss_pred             CCcHHHHHHHH-HHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867           41 LNTAWDIFSMS-VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (673)
Q Consensus        41 ~~tl~~~l~~~-a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l  119 (673)
                      .|...++++++ ++.+||++|++..    +     ..+||.||.++++++|.+|.+.|+++|++|+++++|+++++++++
T Consensus         3 ~~~~~~~~~~~~~~~~p~~~a~~~~----~-----~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~   73 (508)
T TIGR02262         3 YNAAEDLLDRNVVEGRGGKTAFIDD----I-----SSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFL   73 (508)
T ss_pred             chHHHHHHHHHHhcccCCceEEEeC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            46678888887 6779999999753    2     579999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceec
Q 005867          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (673)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  199 (673)
                      ||+++|++++|+++..+.+.+.++++.++++++++++.....+.+.. ...+....++..+....           ....
T Consensus        74 a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~  141 (508)
T TIGR02262        74 GAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAAL-GKSPHLEHRVVVGRPEA-----------GEVQ  141 (508)
T ss_pred             HHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHH-hcCCCccEEEEeCCCCc-----------cccc
Confidence            99999999999999999999999999999999999987665543221 12223333444332211           1223


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhh-hhhhhccccCCCCCCcEEEEecchHhH
Q 005867          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (673)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~d~~l~~~p~~~~  278 (673)
                      +.++..... .........++++++++|||||||.||+|.++|+++...+.. ....+     +++.+|+++..+|++|.
T Consensus       142 ~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~  215 (508)
T TIGR02262       142 LAELLATES-EQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL-----GIREDDVVFSAAKLFFA  215 (508)
T ss_pred             HHHHhhcCC-CccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhc-----CCCCCCEEEEcCchHHH
Confidence            444443321 122223456789999999999999999999999999887765 23333     67889999999999999


Q ss_pred             HHHHH-hHHHhhcCcEEEEecC--CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 005867          279 LDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (673)
Q Consensus       279 ~gl~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (673)
                      +++.. ++.++..|+++++.+.  ++..++..++++++|.++++|.++..+.......                      
T Consensus       216 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~----------------------  273 (508)
T TIGR02262       216 YGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLP----------------------  273 (508)
T ss_pred             HHHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCcccc----------------------
Confidence            99865 4567889999988775  7999999999999999999999887664321000                      


Q ss_pred             hhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCcccc
Q 005867          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV  435 (673)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~  435 (673)
                                             ...+.++|.++++|+++++++.+.|.+.+++++++.||+||++.++.....+. ...
T Consensus       274 -----------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-~~~  329 (508)
T TIGR02262       274 -----------------------AEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGD-VRY  329 (508)
T ss_pred             -----------------------ccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCCccC-CCC
Confidence                                   00114899999999999999999999999999999999999997665443332 233


Q ss_pred             CCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCCcEEEeecC
Q 005867          436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK  515 (673)
Q Consensus       436 ~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~  515 (673)
                      +++|.|++++++++++ +++.  +++.|+.|||+++|+.++.||+++++.+...|.++||+|||+++++++|.+++.||.
T Consensus       330 ~~~G~~~~g~~v~i~d-~~~~--~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~gR~  406 (508)
T TIGR02262       330 GTSGKPVPGYRLRLVG-DGGQ--DVAAGEPGELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDKYVRNDDGSYTYAGRT  406 (508)
T ss_pred             CCcCCCCCCcEEEEEC-CCCC--CCCCCCeeEEEEecCccccccCCCHHHhHhhhhcCceeccceEEEcCCccEEEeccc
Confidence            7899999999999999 5554  455678999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHH
Q 005867          516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY  592 (673)
Q Consensus       516 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  592 (673)
                      +|+|++ +|.+++|.+||+.|.++++|.++++++..+.   +.+.+++++.++..                 ....+.  
T Consensus       407 ~d~i~~-~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----------------~~~~~~--  466 (508)
T TIGR02262       407 DDMLKV-SGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQD-----------------IDTALE--  466 (508)
T ss_pred             cceeee-CCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCc-----------------cccccH--
Confidence            999997 7999999999999999999999999996543   36778888765421                 001111  


Q ss_pred             HHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 005867          593 ILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  656 (673)
Q Consensus       593 ~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~  656 (673)
                        ++|.+.++ ++             |+.+++|..+.+++      .+|+|++||++|++|+++
T Consensus       467 --~~i~~~~~-~~-------------l~~~~~p~~i~~~~------~iP~t~~gKi~r~~l~~~  508 (508)
T TIGR02262       467 --TELKEHVK-DR-------------LAPYKYPRWIVFVD------DLPKTATGKIQRFKLREG  508 (508)
T ss_pred             --HHHHHHHH-Hh-------------cccCCCCceEEEec------CCCCCCCCcEehhhccCC
Confidence              22222222 12             99999999998873      236999999999998753

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.2e-57  Score=506.66  Aligned_cols=477  Identities=21%  Similarity=0.230  Sum_probs=378.5

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (673)
Q Consensus        40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l  119 (673)
                      ...++.+.|..+++++||++|+++.   +      +.+||.||.+++.++|.+|.+.|+++||+|+++++|++++++++|
T Consensus        33 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~l  103 (516)
T PRK13383         33 GGTNPYTLLAVTAARWPGRTAIIDD---D------GALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVF  103 (516)
T ss_pred             cCCcHHHHHHHHHHHCCCCcEEEeC---C------CcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            3578999999999999999999863   2      379999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceec
Q 005867          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (673)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  199 (673)
                      ||+++|++++|+++.++.+++.++++.++++.+++++.....+....       ..++.++....               
T Consensus       104 a~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-------~~~~~~~~~~~---------------  161 (516)
T PRK13383        104 AVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGAD-------DAVAVIDPATA---------------  161 (516)
T ss_pred             HHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhh-------cceEEeccchh---------------
Confidence            99999999999999999999999999999999999887655442211       11222221100               


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHH--hhhhhhhccccCCCCCCcEEEEecchHh
Q 005867          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV--SGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (673)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~--~~~~~~~~~~~~~~~~~d~~l~~~p~~~  277 (673)
                        .. ..     ....+...++.++++|||||||.||+|.++|.......  ......+     ++..+++++..+|++|
T Consensus       162 --~~-~~-----~~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~pl~h  228 (516)
T PRK13383        162 --GA-EE-----SGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRT-----RLRTGSRISVAMPMFH  228 (516)
T ss_pred             --hh-hc-----CCCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhh-----ccCCCCeEEEecCCcc
Confidence              00 00     00111234566899999999999999999997432111  1111222     5778999999999999


Q ss_pred             HHHHHHhHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh
Q 005867          278 ILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (673)
Q Consensus       278 ~~gl~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (673)
                      .+|+...+.++..|+++++... ++..+++.++++++|.+.++|+++..+.........                     
T Consensus       229 ~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---------------------  287 (516)
T PRK13383        229 GLGLGMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRA---------------------  287 (516)
T ss_pred             hhhHHHHHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccc---------------------
Confidence            9999877788999999887766 999999999999999999999999887643211000                     


Q ss_pred             hhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCccccC
Q 005867          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVG  436 (673)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~  436 (673)
                                            ....+++|.+++||+++++++.+.|.+.++.++++.||+||++..+...........+
T Consensus       288 ----------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~  345 (516)
T PRK13383        288 ----------------------RNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAPE  345 (516)
T ss_pred             ----------------------cCCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceeccccccccCCC
Confidence                                  0011489999999999999999999999999999999999998766544333233447


Q ss_pred             CcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCCcEEEeecCC
Q 005867          437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK  516 (673)
Q Consensus       437 ~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~  516 (673)
                      ++|.|+++++++|++ +++.  +++.|+.|||+++|+.++.+|++++.   ..+.+|||+|||+|++|++|++++.||.+
T Consensus       346 ~~G~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~~Y~~~~~---~~~~~g~~~TGDl~~~d~~G~l~i~GR~~  419 (516)
T PRK13383        346 TVGKPVAGCPVRILD-RNNR--PVGPRVTGRIFVGGELAGTRYTDGGG---KAVVDGMTSTGDMGYLDNAGRLFIVGRED  419 (516)
T ss_pred             cccCCCCCcEEEEEC-CCCC--CCCCCCceEEEEecCcccccccCCch---hheecCceecceeEEEcCCccEEEecccc
Confidence            899999999999998 5554  55567899999999999999998753   33468999999999999999999999999


Q ss_pred             CeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHH
Q 005867          517 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI  593 (673)
Q Consensus       517 d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (673)
                      |+|++ +|.+|+|.+||++|.+||.|.+++|++.++.   +.+.++|++.++..                .+..++.+++
T Consensus       420 ~~i~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~----------------~~~~~l~~~~  482 (516)
T PRK13383        420 DMIIS-GGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSG----------------VDAAQLRDYL  482 (516)
T ss_pred             ceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCC----------------CCHHHHHHHH
Confidence            99997 8999999999999999999999999996643   47888888765320                0223334444


Q ss_pred             HHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 005867          594 LSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  654 (673)
Q Consensus       594 ~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~  654 (673)
                      .+.                      |+.|++|..+.+++      .+|+|++||++|++|.
T Consensus       483 ~~~----------------------l~~~~~p~~i~~v~------~iP~t~~gKi~r~~L~  515 (516)
T PRK13383        483 KDR----------------------VSRFEQPRDINIVS------SIPRNPTGKVLRKELP  515 (516)
T ss_pred             HHh----------------------cccCCCCcEEEEeC------CCCCCCCCcCcHHHhC
Confidence            433                      88999999999983      3469999999999873

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-57  Score=511.45  Aligned_cols=513  Identities=20%  Similarity=0.239  Sum_probs=390.9

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (673)
Q Consensus        40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l  119 (673)
                      .-.++.++|+.+|+.+|+++|+.+.   +      +.+||.||.+++.++|.+|.+.|+++|++|+++++|+++++++++
T Consensus        31 ~~~~l~~~l~~~a~~~p~~~al~~~---~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~l  101 (567)
T PRK06178         31 GERPLTEYLRAWARERPQRPAIIFY---G------HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFF  101 (567)
T ss_pred             CcccHHHHHHHHHHHCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHH
Confidence            3468999999999999999999875   3      479999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCc--HHHHHHHh--h---
Q 005867          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT--AEQKEMAV--Q---  192 (673)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~--~---  192 (673)
                      ||+++|++++|++|..+.+.+.++++.++++++++++.....+.+.....  ....++......  ........  .   
T Consensus       102 A~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~  179 (567)
T PRK06178        102 GILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET--SLRHVIVTSLADVLPAEPTLPLPDSLRA  179 (567)
T ss_pred             HHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC--CcceEEEecccccccccccccccccccc
Confidence            99999999999999999999999999999999999987766553322111  122222221110  00000000  0   


Q ss_pred             CCCceecHHHHHhcCc--cCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEE
Q 005867          193 TGIKPYSWDEFLHLGK--VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL  270 (673)
Q Consensus       193 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l  270 (673)
                      .......+.++.....  ..........++++++++|||||||.||+|.++|.++...+.......    ..+..+++++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~----~~~~~~d~~l  255 (567)
T PRK06178        180 PRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVA----VVGGEDSVFL  255 (567)
T ss_pred             ccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHh----ccCCCCcEEE
Confidence            0000011222222111  111122345688999999999999999999999999887665543221    1577899999


Q ss_pred             EecchHhHHHHHH-hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 005867          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (673)
Q Consensus       271 ~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (673)
                      +.+|++|.+|+.. ++.+++.|+++++.+. ++..++..++++++|.+.++|..+..+.....                 
T Consensus       256 ~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~-----------------  318 (567)
T PRK06178        256 SFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPR-----------------  318 (567)
T ss_pred             EecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC-----------------
Confidence            9999999999864 6667999999999887 89999999999999999999998877653110                 


Q ss_pred             HHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEE--EcCCCCCHHHHHHHHHhcCCceee-ecCCCCCCCccc
Q 005867          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI--SGGAPLSTEVEEFLRVTCCAFLVQ-GYGLTETCGPTT  425 (673)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~--~~G~~l~~~~~~~~~~~~g~~v~~-~YG~tE~~~~~~  425 (673)
                                          ....++        ++++.+.  ..|+.+++++.+.|++.+|..++. .||+||++..+.
T Consensus       319 --------------------~~~~~l--------~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~  370 (567)
T PRK06178        319 --------------------FAEYDL--------SSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDT  370 (567)
T ss_pred             --------------------CCCCCc--------chheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccce
Confidence                                000011        2566654  446899999999999988877765 799999986644


Q ss_pred             ccCCC--C----ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCc
Q 005867          426 VCFPD--E----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGD  499 (673)
Q Consensus       426 ~~~~~--~----~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGD  499 (673)
                      .....  .    ...+.++|.|++|++++++|.+++  .+++.|+.|||+++|+.++.||+++++.+...|.+|||+|||
T Consensus       371 ~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~--~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dg~~~TGD  448 (567)
T PRK06178        371 FTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETG--ELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGD  448 (567)
T ss_pred             eccccccCccccccCCcccccccCCcEEEEEcCCCC--CcCCCCCceEEEEECCcccccccCChhhhhhcccCCceeecc
Confidence            33211  0    122367899999999999983333  345567899999999999999999999999888899999999


Q ss_pred             eEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCC
Q 005867          500 IGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGH  576 (673)
Q Consensus       500 lg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~  576 (673)
                      +|+++++|+++++||.+|+|++ +|.+++|.+||+++..+|+|.+++|++.+++   +.++++|++.++..         
T Consensus       449 l~~~~~~g~l~i~GR~~d~i~~-~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~---------  518 (567)
T PRK06178        449 IGKIDEQGFLHYLGRRKEMLKV-NGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGAD---------  518 (567)
T ss_pred             eEEEecCCeEEEEecccccEEE-CCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCCc---------
Confidence            9999999999999999999997 8999999999999999999999999986644   47888888765321         


Q ss_pred             CCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 005867          577 AGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  656 (673)
Q Consensus       577 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~  656 (673)
                             .+..++.+++++.                      |+.|.+|. +.++      +.+|+|++||++|++|+++
T Consensus       519 -------~~~~~l~~~~~~~----------------------l~~~~~p~-i~~v------~~iP~t~~GKv~r~~l~~~  562 (567)
T PRK06178        519 -------LTAAALQAWCREN----------------------MAVYKVPE-IRIV------DALPMTATGKVRKQDLQAL  562 (567)
T ss_pred             -------CCHHHHHHHHHhc----------------------CcccCCce-EEEe------ccCCCCCccceeHHHHHHH
Confidence                   0223344444432                      99999996 6665      2346999999999999988


Q ss_pred             HHHH
Q 005867          657 YQVE  660 (673)
Q Consensus       657 ~~~~  660 (673)
                      +++.
T Consensus       563 ~~~~  566 (567)
T PRK06178        563 AEEL  566 (567)
T ss_pred             HHhh
Confidence            8653

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.9e-57  Score=505.44  Aligned_cols=509  Identities=24%  Similarity=0.271  Sum_probs=382.6

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHH
Q 005867           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (673)
Q Consensus        42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~  121 (673)
                      +++.+.|+..++.+|+++|+++.   +      ..+||.||.+++.++|.+|.+.|+++||+|+++++|++++++++|||
T Consensus        18 ~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~   88 (545)
T PRK08162         18 LTPLSFLERAAEVYPDRPAVIHG---D------RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGV   88 (545)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEC---C------eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence            68889999999999999999864   3      47999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecHH
Q 005867          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (673)
Q Consensus       122 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  201 (673)
                      +++|++++|+++..+.+++..+++.++++.++++.+....+..... ..+.... +.++.....   ..........++.
T Consensus        89 ~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~  163 (545)
T PRK08162         89 PMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALA-LLPGPKP-LVIDVDDPE---YPGGRFIGALDYE  163 (545)
T ss_pred             HHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHh-hCCCCce-EEEecCccc---cccCCCcccccHH
Confidence            9999999999999999999999999999999999877655432211 1111111 112111000   0000111233566


Q ss_pred             HHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHH
Q 005867          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (673)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl  281 (673)
                      ++............+...+++++++|||||||.||+|.++|+++...+......+     .+..++++++.+|++|.+++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~h~~~~  238 (545)
T PRK08162        164 AFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAW-----GMPKHPVYLWTLPMFHCNGW  238 (545)
T ss_pred             HHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeeEeccCcHhhhhH
Confidence            6654432111111233456789999999999999999999998776655543333     56778899999999999987


Q ss_pred             HHhHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcC
Q 005867          282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (673)
Q Consensus       282 ~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (673)
                      ...+.....|++.++... ++..+++.++++++|++.++|+++..|++......                          
T Consensus       239 ~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------------  292 (545)
T PRK08162        239 CFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWR--------------------------  292 (545)
T ss_pred             HHHHHHHHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccc--------------------------
Confidence            765544444555444444 99999999999999999999999998865211000                          


Q ss_pred             CcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCC---------
Q 005867          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE---------  431 (673)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~---------  431 (673)
                                         ..+.+++.++++|+.+++.+.+.+.+. +.++++.||+||+++.+..+....         
T Consensus       293 -------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~  352 (545)
T PRK08162        293 -------------------AGIDHPVHAMVAGAAPPAAVIAKMEEI-GFDLTHVYGLTETYGPATVCAWQPEWDALPLDE  352 (545)
T ss_pred             -------------------cCCccceEEEECCCCCCHHHHHHHHHh-CCceeecccccccCcceeecccccccccCCccc
Confidence                               000245667889999999999988774 899999999999976544432111         


Q ss_pred             -ccccCCcCCCcc-ceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCCcE
Q 005867          432 -MCMVGTAGPVSV-YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV  509 (673)
Q Consensus       432 -~~~~~~~G~~~~-~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l  509 (673)
                       .....+.|.+++ +..++++|.+++...+.+.++.|||+++|+.++.||+++++.+...|.+|||+|||+|++|++|.+
T Consensus       353 ~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~d~dg~l  432 (545)
T PRK08162        353 RAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGYI  432 (545)
T ss_pred             hhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHhhCCCcccCceEEEcCCccE
Confidence             011245566654 335777772233333332335799999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhcc
Q 005867          510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL  586 (673)
Q Consensus       510 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (673)
                      +++||.+|+|++ +|.+|+|.+||+.|.+||+|.+|+|++.++.   +.+++++++.++..                .+.
T Consensus       433 ~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~----------------~~~  495 (545)
T PRK08162        433 KIKDRSKDIIIS-GGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGAS----------------ATE  495 (545)
T ss_pred             EEEecccceEEe-CCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCCCC----------------CCH
Confidence            999999999996 8999999999999999999999999986643   47888888776421                023


Q ss_pred             HHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 005867          587 VQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  661 (673)
Q Consensus       587 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~  661 (673)
                      +++++.+.+.                      ||.|++|..+.+.++       |+|++||++|+.|++++.+..
T Consensus       496 ~~l~~~~~~~----------------------l~~~~~P~~~~~~~i-------P~t~~gK~~r~~l~~~~~~l~  541 (545)
T PRK08162        496 EEIIAHCREH----------------------LAGFKVPKAVVFGEL-------PKTSTGKIQKFVLREQAKSLK  541 (545)
T ss_pred             HHHHHHHHHh----------------------cccccCCcEEEeccc-------CCCCCcCCcHHHHHHHHhhhh
Confidence            3444444443                      999999998875444       599999999999998876543

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=7e-58  Score=497.46  Aligned_cols=425  Identities=20%  Similarity=0.223  Sum_probs=343.9

Q ss_pred             eeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEc
Q 005867           77 KTYKEVYEEVLQIVSALRASGA-EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ  155 (673)
Q Consensus        77 ~Ty~el~~~v~~lA~~L~~~gv-~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~  155 (673)
                      +.|+||.+++.++|++|.+.|+ ++|++|+++++|+++++++++||+++|++++|+++.++.+++.++++.+++++++++
T Consensus        20 ~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~   99 (452)
T PRK07445         20 YNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGL   99 (452)
T ss_pred             cChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEec
Confidence            7899999999999999999988 579999999999999999999999999999999999999999999999999999987


Q ss_pred             chhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCc
Q 005867          156 DKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDP  235 (673)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p  235 (673)
                      +......                ....                .         .   ......++++++++|||||||.|
T Consensus       100 ~~~~~~~----------------~~~~----------------~---------~---~~~~~~~~~~~~i~~TSGTTG~P  135 (452)
T PRK07445        100 DQLKLSH----------------PPPL----------------P---------S---QGILPNLETGWIMIPTGGSSGQI  135 (452)
T ss_pred             Ccccccc----------------CCCC----------------C---------c---cccCCCCCCcEEEEeCCCCCCCC
Confidence            6432100                0000                0         0   00123568899999999999999


Q ss_pred             ceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEecC-CHHHHHHHhhhccCe
Q 005867          236 KGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPT  314 (673)
Q Consensus       236 K~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t  314 (673)
                      |+|.+||+++...+......+     ++.+ ++.++.+|++|.+|+...+.++..|+++++.+. +..........+++|
T Consensus       136 KgV~~t~~~l~~~~~~~~~~~-----~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t  209 (452)
T PRK07445        136 RFAIHTWETLTASVQGFQRYF-----QLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDF  209 (452)
T ss_pred             cEEEechHHHHHHHHHHHHHh-----cCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCce
Confidence            999999999988887766555     4444 457889999999999878888999999998764 222223344578899


Q ss_pred             EEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCC
Q 005867          315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP  394 (673)
Q Consensus       315 ~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~  394 (673)
                      +++++|+++..+.+...                                                ..+++||.+++||++
T Consensus       210 ~~~~vP~~l~~l~~~~~------------------------------------------------~~l~~l~~i~~gG~~  241 (452)
T PRK07445        210 FLSLVPTQLQRLLQLRP------------------------------------------------QWLAQFRTILLGGAP  241 (452)
T ss_pred             EEEehHHHHHHHHhhCh------------------------------------------------hhhhcceEEEECCcc
Confidence            99999999998764100                                                001389999999999


Q ss_pred             CCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCC-ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecC
Q 005867          395 LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK  473 (673)
Q Consensus       395 l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp  473 (673)
                      +++++.+.+.+ +++++++.||+||++..+.....+. .....++|.|+++++++|++           ++.|||+|+||
T Consensus       242 l~~~~~~~~~~-~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~~-----------g~~Gel~v~g~  309 (452)
T PRK07445        242 AWPSLLEQARQ-LQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIPA-----------NQTGNITIQAQ  309 (452)
T ss_pred             CCHHHHHHHHh-cCCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEcC-----------CCcceEEEeCC
Confidence            99999998876 4899999999999986554433222 22346899999999999872           35799999999


Q ss_pred             CccccccCCchhhhhhccCCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC
Q 005867          474 TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK  553 (673)
Q Consensus       474 ~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~  553 (673)
                      .++.||++++..     .+|||+|||+|++|+||++++.||.||+|+. +|++|+|.+||++|.+||+|.+|+|++.+++
T Consensus       310 ~~~~gY~~~~~~-----~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~-~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~  383 (452)
T PRK07445        310 SLALGYYPQILD-----SQGIFETDDLGYLDAQGYLHILGRNSQKIIT-GGENVYPAEVEAAILATGLVQDVCVLGLPDP  383 (452)
T ss_pred             ccchhhcCCccC-----CCCEEECCCEEEEcCCCCEEEEeecCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccCc
Confidence            999999976431     3789999999999999999999999999996 8999999999999999999999999997764


Q ss_pred             ---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEE
Q 005867          554 ---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVIL  630 (673)
Q Consensus       554 ---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~  630 (673)
                         +.++|+++..++..                 +..++++++.+.                      |+.|++|+.+++
T Consensus       384 ~~g~~~~a~vv~~~~~~-----------------~~~~l~~~~~~~----------------------L~~~~~P~~i~~  424 (452)
T PRK07445        384 HWGEVVTAIYVPKDPSI-----------------SLEELKTAIKDQ----------------------LSPFKQPKHWIP  424 (452)
T ss_pred             CCCcEEEEEEEeCCCCC-----------------CHHHHHHHHHHh----------------------CCcccCCeEEEE
Confidence               37888888765320                 223444444433                      999999999999


Q ss_pred             ecCCCCCCCCccccccccchHHHHHHHHHHHH
Q 005867          631 DPRPFDMERDLVTATLKKKRNKLLIYYQVEID  662 (673)
Q Consensus       631 ~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~~  662 (673)
                      ++.      +|+|++||++|++|+++|.++|+
T Consensus       425 v~~------lP~t~~GKi~r~~L~~~~~~~~~  450 (452)
T PRK07445        425 VPQ------LPRNPQGKINRQQLQQIAVQRLG  450 (452)
T ss_pred             ecC------CCCCCCcccCHHHHHHHHHHhhC
Confidence            832      36999999999999999988764

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=2.7e-58  Score=612.59  Aligned_cols=483  Identities=20%  Similarity=0.196  Sum_probs=400.1

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      ..++.++|+.+++++||++|+++.   +      +++||+||.++++++|+.|.+.|+++|++|+++++|++++++++||
T Consensus       510 ~~~~~~~~~~~a~~~p~~~A~~~~---~------~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la  580 (5163)
T PRK12316        510 QRGVHRLFEEQVERTPEAPALAFG---E------ETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLA  580 (5163)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            468999999999999999999875   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecH
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  200 (673)
                      |+++|++++|++|.++.+++.++++.++++++|++......+..      .....++.++....                
T Consensus       581 ~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~----------------  638 (5163)
T PRK12316        581 ILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPL------AAGVQVLDLDRPAA----------------  638 (5163)
T ss_pred             HHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCc------ccCceEEEecCcch----------------
Confidence            99999999999999999999999999999999998865443211      00112222221110                


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHH
Q 005867          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (673)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (673)
                        ..... ....+.....++++++++|||||||.||||+++|+++.+.+.+....+     ++..++++++.+|++|..+
T Consensus       639 --~~~~~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~fd~~  710 (5163)
T PRK12316        639 --WLEGY-SEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAY-----GLGVGDTVLQKTPFSFDVS  710 (5163)
T ss_pred             --hhccC-CCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhc-----CCCCCCEEEeeCCeehHHH
Confidence              00010 111222345688999999999999999999999999999999888777     7889999999999999999


Q ss_pred             HHHhHHHhhcCcEEEEecC----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh
Q 005867          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (673)
Q Consensus       281 l~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (673)
                      +..++.++..|+++++.+.    ++..+++.++++++|++.++|++++.|.+...  .                      
T Consensus       711 ~~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~----------------------  766 (5163)
T PRK12316        711 VWEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED--V----------------------  766 (5163)
T ss_pred             HHHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc--c----------------------
Confidence            9888999999999999853    89999999999999999999999998754210  0                      


Q ss_pred             hhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCC-CCccc
Q 005867          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFP-DEMCM  434 (673)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~-~~~~~  434 (673)
                                             ..++++|.+++||+++++++.+.|.+.+ +++++|.||+||++..++.... .....
T Consensus       767 -----------------------~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~  823 (5163)
T PRK12316        767 -----------------------ASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGD  823 (5163)
T ss_pred             -----------------------ccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCC
Confidence                                   0114899999999999999999987665 7899999999999865443322 22233


Q ss_pred             cCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhcc-------CCccccCceEEECCCC
Q 005867          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNG  507 (673)
Q Consensus       435 ~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~-------~g~~~TGDlg~~~~~G  507 (673)
                      ..++|+|++|++++|+| +++.  +++.|+.|||+|+|++++.||+++++.|.+.|.       ++||+|||+|++++||
T Consensus       824 ~~~iG~p~~~~~~~i~d-~~~~--~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG  900 (5163)
T PRK12316        824 SVPIGRPIANLACYILD-ANLE--PVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADG  900 (5163)
T ss_pred             CCCCccccCCCEEEEEC-CCCC--CCCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCC
Confidence            46899999999999999 6554  556678999999999999999999999999883       2499999999999999


Q ss_pred             cEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCCCeEEEEEecChhHHHHHHHHcCCCCcHHHHhccH
Q 005867          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLV  587 (673)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (673)
                      .|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+ .+.++|+|++.++..                ....
T Consensus       901 ~l~~~GR~d~~ik~-~G~rI~~~EIE~~l~~~p~V~~a~V~~~~-~~~lva~vv~~~~~~----------------~~~~  962 (5163)
T PRK12316        901 VIEYAGRIDHQVKL-RGLRIELGEIEARLLEHPWVREAAVLAVD-GKQLVGYVVLESEGG----------------DWRE  962 (5163)
T ss_pred             CEEeecccCCEEEE-ceEEcChHHHHHHHHhCCCcceEEEEEcC-CCeEEEEEEccCCCC----------------CCHH
Confidence            99999999999998 79999999999999999999999999987 778999999876420                0223


Q ss_pred             HHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 005867          588 QLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  658 (673)
Q Consensus       588 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~  658 (673)
                      ++++++.+.                      ||.|++|..|++++      .+|+|++||++|++|.+.+.
T Consensus       963 ~l~~~l~~~----------------------Lp~y~vP~~i~~v~------~lP~t~~GKidr~~L~~~~~ 1005 (5163)
T PRK12316        963 ALKAHLAAS----------------------LPEYMVPAQWLALE------RLPLTPNGKLDRKALPAPEA 1005 (5163)
T ss_pred             HHHHHHHhh----------------------CCCccCCCeEEEHh------hCCCCCCCChhHHhhcCccc
Confidence            344444433                      99999999999983      33699999999999986543

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=1.8e-58  Score=614.33  Aligned_cols=483  Identities=20%  Similarity=0.239  Sum_probs=397.3

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      ..++.++|..+|+++|+++|+++.   +      +.+||+||.++++++|..|.+.|+++|++|++++++++++++++||
T Consensus      2002 ~~~~~~~~~~~a~~~p~~~A~~~~---~------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lA 2072 (5163)
T PRK12316       2002 GPGVHQRIAEQAARAPEAIAVVFG---D------QHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLA 2072 (5163)
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEcC---C------CeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            458999999999999999999875   4      4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecH
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  200 (673)
                      |+++|++++|++|.++.+++.++++.+++++++++......+...     .... .+.++..                  
T Consensus      2073 il~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~~-~~~~~~~------------------ 2128 (5163)
T PRK12316       2073 VLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLP-----AGVA-RLPLDRD------------------ 2128 (5163)
T ss_pred             HHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccc-----cccc-eEeccch------------------
Confidence            999999999999999999999999999999999988765433110     0111 1111110                  


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHH
Q 005867          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (673)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (673)
                      ..+...  ....+.....++++++|+|||||||.||||+++|+++.+.+......+     +++.+++++.+.|++|..+
T Consensus      2129 ~~~~~~--~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~ 2201 (5163)
T PRK12316       2129 AEWADY--PDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY-----ELSPADCELQFMSFSFDGA 2201 (5163)
T ss_pred             hhhhcc--CccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhc-----CCCCcceEEEecCchHHHH
Confidence            000000  111122345789999999999999999999999999999998887777     7889999999999999988


Q ss_pred             HHHhHHHhhcCcEEEEecC---CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhh
Q 005867          281 RVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (673)
Q Consensus       281 l~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (673)
                      +..++.++..|+++++.+.   ++..+++.++++++|+++++|+++..|.......                        
T Consensus      2202 ~~~~~~~L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------------------------ 2257 (5163)
T PRK12316       2202 HEQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERD------------------------ 2257 (5163)
T ss_pred             HHHHHHHHhCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhcc------------------------
Confidence            8888999999999977664   7899999999999999999999999876532100                        


Q ss_pred             hcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCCCCcc---
Q 005867          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMC---  433 (673)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~~~~---  433 (673)
                                            ...++||.+++|||++++++.+.|.+.+ +..++|.||+||++..++........   
T Consensus      2258 ----------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~ 2315 (5163)
T PRK12316       2258 ----------------------GRPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPCG 2315 (5163)
T ss_pred             ----------------------cCCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeeeeecccccccC
Confidence                                  0013899999999999999999998766 67899999999998776543322111   


Q ss_pred             -ccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhcc--------CCccccCceEEEC
Q 005867          434 -MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--------DGWFHTGDIGQIL  504 (673)
Q Consensus       434 -~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~--------~g~~~TGDlg~~~  504 (673)
                       ...++|+|++|++++|+| +++.  +++.|+.|||+|+|++++.||+++|+.|.+.|.        ++||+|||+|+++
T Consensus      2316 ~~~~~iG~p~~~~~~~i~d-~~~~--~vp~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~ 2392 (5163)
T PRK12316       2316 AAYVPIGRALGNRRAYILD-ADLN--LLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYR 2392 (5163)
T ss_pred             CCcCCcccccCCCEEEEEC-CCCC--CCCCCCeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEecccEEEEc
Confidence             125799999999999999 5554  556678999999999999999999999999982        2599999999999


Q ss_pred             CCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCC--CCeEEEEEecChhHHHHHHHHcCCCCcHHH
Q 005867          505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFLE  582 (673)
Q Consensus       505 ~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~  582 (673)
                      +||.++++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.++  .+.++|+|++.++..               
T Consensus      2393 ~dG~l~~~GR~d~~iki-~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~v~~~~~~~--------------- 2456 (5163)
T PRK12316       2393 ADGVVEYLGRIDHQVKI-RGFRIELGEIEARLQAHPAVREAVVVAQDGASGKQLVAYVVPDDAAE--------------- 2456 (5163)
T ss_pred             CCCcEEEecCCCCeEEE-cCccCChHHHHHHHhhCcccceEEEEEEecCCCeEEEEEEEecCCCc---------------
Confidence            99999999999999998 799999999999999999999999998553  358999999876421               


Q ss_pred             HhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 005867          583 LCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  657 (673)
Q Consensus       583 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~  657 (673)
                       ....++++++.+.                      ||.|++|..+++++      .+|+|++||++|++|.+..
T Consensus      2457 -~~~~~l~~~l~~~----------------------Lp~~~vP~~~~~l~------~lP~t~~GKidR~~L~~~~ 2502 (5163)
T PRK12316       2457 -DLLAELRAWLAAR----------------------LPAYMVPAHWVVLE------RLPLNPNGKLDRKALPKPD 2502 (5163)
T ss_pred             -cCHHHHHHHHHhh----------------------CchhcCcceEeeec------ccCCCCCCccCHhhcCCCc
Confidence             0223344444433                      99999999999883      3469999999999997654

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.3e-57  Score=498.41  Aligned_cols=453  Identities=26%  Similarity=0.292  Sum_probs=368.2

Q ss_pred             HHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeC
Q 005867           52 VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL  131 (673)
Q Consensus        52 a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl  131 (673)
                      +++.++++|++..    +     +++||.||.++++++|..|.     ++|+|+++++|+++++++++||+++|++++|+
T Consensus        10 ~~~~~~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l   75 (471)
T PRK07787         10 AAAADIADAVRIG----G-----RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPV   75 (471)
T ss_pred             hcccCCceEEEeC----C-----cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeec
Confidence            3456789998764    3     58999999999999999996     46999999999999999999999999999999


Q ss_pred             CCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecHHHHHhcCccCC
Q 005867          132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE  211 (673)
Q Consensus       132 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (673)
                      ++..+.+++..+++.+++++++++.....       ........  ...                ...+           
T Consensus        76 ~~~~~~~~l~~~l~~~~~~~il~~~~~~~-------~~~~~~~~--~~~----------------~~~~-----------  119 (471)
T PRK07787         76 PPDSGVAERRHILADSGAQAWLGPAPDDP-------AGLPHVPV--RLH----------------ARSW-----------  119 (471)
T ss_pred             CCCCChHHHHHHHHhcCCCEEEecCCccc-------ccccceee--ecc----------------cccc-----------
Confidence            99999999999999999999999763110       00000000  000                0000           


Q ss_pred             ccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHH-hHHHhhc
Q 005867          212 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRR  290 (673)
Q Consensus       212 ~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~-~~~~l~~  290 (673)
                      .......++++++++|||||||.||+|.++|+++...+..+...+     ++..++++++.+|++|..|+.. .+.++..
T Consensus       120 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~  194 (471)
T PRK07787        120 HRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAW-----QWTADDVLVHGLPLFHVHGLVLGVLGPLRI  194 (471)
T ss_pred             ccCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhc-----CCCccceeEeccCCeeechhHHHHHHHHhc
Confidence            011124578999999999999999999999999999888776666     6788999999999999999875 5667999


Q ss_pred             CcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhH
Q 005867          291 GASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA  369 (673)
Q Consensus       291 G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (673)
                      |+++++... ++..++..++ +++|.++++|+++..+.+....                                     
T Consensus       195 G~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~-------------------------------------  236 (471)
T PRK07787        195 GNRFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEA-------------------------------------  236 (471)
T ss_pred             CCEEEecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCccc-------------------------------------
Confidence            999988776 9999999999 9999999999999887642100                                     


Q ss_pred             HHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCccccCCcCCCccceeEEE
Q 005867          370 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL  449 (673)
Q Consensus       370 ~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i  449 (673)
                               ...++++|.+++||+++++.+.++|.+.++.++++.||+||++...+..... ....+++|.|+++++++|
T Consensus       237 ---------~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~vG~~~~g~~~~i  306 (471)
T PRK07787        237 ---------ARALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADG-ERRPGWVGLPLAGVETRL  306 (471)
T ss_pred             ---------cccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCCCC-cccCCcccccCCCcEEEE
Confidence                     0011489999999999999999999998999999999999998765443322 233478999999999999


Q ss_pred             eecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCceEEECCCCcEEEeecC-CCeEEcCCceee
Q 005867          450 EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRK-KNLIKISQGEYV  527 (673)
Q Consensus       450 ~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~~GR~-~d~i~~~~G~~v  527 (673)
                      ++ +++..++.+.+..|||+++|++++.||+++++.+...| .+|||+|||+|++++||.++++||. |++++. +|.+|
T Consensus       307 ~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~-~G~~v  384 (471)
T PRK07787        307 VD-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKS-GGYRI  384 (471)
T ss_pred             EC-CCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEee-CCEEE
Confidence            99 66555443333479999999999999999999999888 5899999999999999999999996 899996 89999


Q ss_pred             chHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhc
Q 005867          528 ALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERN  604 (673)
Q Consensus       528 ~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  604 (673)
                      +|.+||++|..+|.|.+++|++.++.   +.++++|++....                  +..++.+++++.        
T Consensus       385 ~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~------------------~~~~l~~~l~~~--------  438 (471)
T PRK07787        385 GAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGADDV------------------AADELIDFVAQQ--------  438 (471)
T ss_pred             CHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCCCC------------------CHHHHHHHHHhh--------
Confidence            99999999999999999999997654   4788888874321                  333444444443        


Q ss_pred             ccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 005867          605 KVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  655 (673)
Q Consensus       605 ~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~  655 (673)
                                    |++|++|..|++++      .+|+|++||++|++|++
T Consensus       439 --------------l~~~~~P~~i~~~~------~iP~~~~GKi~r~~L~~  469 (471)
T PRK07787        439 --------------LSVHKRPREVRFVD------ALPRNAMGKVLKKQLLS  469 (471)
T ss_pred             --------------cccccCCcEEEEec------cCCCCCCccccHHHhcc
Confidence                          99999999999883      34699999999999975

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.9e-57  Score=497.35  Aligned_cols=451  Identities=24%  Similarity=0.301  Sum_probs=369.5

Q ss_pred             CCcHHHHH-HHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867           41 LNTAWDIF-SMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (673)
Q Consensus        41 ~~tl~~~l-~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l  119 (673)
                      |+++.+.+ .++|+++|+++|+++.    +     +.+||.||.++++++|..|.+.|+++||+|+++++|+++++++++
T Consensus         1 ~~~~~~~~~~~~a~~~~~~~a~~~~----~-----~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~l   71 (458)
T PRK09029          1 MMIFSDWPWRHWAQVRPQAIALRLN----D-----EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYL   71 (458)
T ss_pred             CchhhcChHHHHHHhCCCceeeecC----C-----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHH
Confidence            34555555 5668899999999853    3     479999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceec
Q 005867          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (673)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  199 (673)
                      ||+++|++++|+++..+.+++..+++++++++++++++... +..        +...                      .
T Consensus        72 a~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~--------~~~~----------------------~  120 (458)
T PRK09029         72 ALLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSA--------LTSL----------------------H  120 (458)
T ss_pred             HHHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhh--------cccc----------------------c
Confidence            99999999999999999999999999999999998775422 100        0000                      0


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHH
Q 005867          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (673)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~  279 (673)
                      ...      ..........++++++++|||||||.||+|.++|++++..+......+     +...+++++..+|++|.+
T Consensus       121 ~~~------~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~  189 (458)
T PRK09029        121 LQL------VEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLM-----PFTAQDSWLLSLPLFHVS  189 (458)
T ss_pred             ccc------ccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcC-----CCCccceEEEecCcHhhh
Confidence            000      001112234678899999999999999999999999999988776666     678899999999999999


Q ss_pred             HHHHhHHHhhcCcEEEEecCCHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhc
Q 005867          280 DRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG  359 (673)
Q Consensus       280 gl~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (673)
                      |+...+.++..|+++++.+.  ..+...+  .++|.+..+|+++..+......                           
T Consensus       190 g~~~~~~~l~~G~~v~~~~~--~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~---------------------------  238 (458)
T PRK09029        190 GQGIVWRWLYAGATLVVRDK--QPLEQAL--AGCTHASLVPTQLWRLLDNRSE---------------------------  238 (458)
T ss_pred             hhHHHHHHHhCCceEEeCCh--HHHHHHH--hhceeeecChHHHHHHHhcccc---------------------------
Confidence            98777778999999988763  5566666  3789999999998877542110                           


Q ss_pred             CCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCccccCCcC
Q 005867          360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG  439 (673)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G  439 (673)
                                            ..++|.+++||+++++.+.+.+.+. |.++++.||+||++........+   ...++|
T Consensus       239 ----------------------~~~l~~i~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~---~~~~~G  292 (458)
T PRK09029        239 ----------------------PLSLKAVLLGGAAIPVELTEQAEQQ-GIRCWCGYGLTEMASTVCAKRAD---GLAGVG  292 (458)
T ss_pred             ----------------------CCcceEEEECCCCCCHHHHHHHHHc-CCcEeccccccccCcceeccCCC---CCCCCC
Confidence                                  0379999999999999999998864 99999999999998765443322   125699


Q ss_pred             CCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCCcEEEeecCCCeE
Q 005867          440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI  519 (673)
Q Consensus       440 ~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i  519 (673)
                      .|++++++++++              |||+++|+.++.||+++++.+.....+|||+|||+|++| +|.+++.||.+|+|
T Consensus       293 ~~~~~~~~~i~~--------------gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i  357 (458)
T PRK09029        293 SPLPGREVKLVD--------------GEIWLRGASLALGYWRQGQLVPLVNDEGWFATRDRGEWQ-NGELTILGRLDNLF  357 (458)
T ss_pred             CCCCCCEEEEeC--------------CEEEEecCceeeeeecCccccccccCCCccCCCCcEEEe-CCEEEEecccccce
Confidence            999999999887              899999999999999999887765678999999999999 99999999999999


Q ss_pred             EcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHH
Q 005867          520 KISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE  596 (673)
Q Consensus       520 ~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (673)
                      ++ +|.+|+|.+||++|.+||+|.+|+|++.+++   +.++++|++....                  ...++.+++++.
T Consensus       358 ~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~------------------~~~~l~~~~~~~  418 (458)
T PRK09029        358 FS-GGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSEA------------------AVVNLAEWLQDK  418 (458)
T ss_pred             ee-CCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCccc------------------CHHHHHHHHHhh
Confidence            97 7999999999999999999999999998765   4688888876321                  233444444433


Q ss_pred             HHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 005867          597 LKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  661 (673)
Q Consensus       597 l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~  661 (673)
                                            ||.|++|..+.+++..      |+|++||++|+.|++++.+..
T Consensus       419 ----------------------l~~~~~P~~~~~~~~~------p~t~~gKi~r~~L~~~~~~~~  455 (458)
T PRK09029        419 ----------------------LARFQQPVAYYLLPPE------LKNGGIKISRQALKEWVAQQL  455 (458)
T ss_pred             ----------------------chhccCCeEEEEeccc------ccCcCCCcCHHHHHHHHHhcc
Confidence                                  9999999999998422      499999999999998887543

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4e-57  Score=500.76  Aligned_cols=484  Identities=19%  Similarity=0.188  Sum_probs=369.3

Q ss_pred             HHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHHHhcCCeEe
Q 005867           50 MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV  129 (673)
Q Consensus        50 ~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~v  129 (673)
                      .+|+++|+++|+++.   ++.    +.+||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus         5 ~~a~~~p~~~a~~~~---~~~----~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~   77 (501)
T PRK13390          5 THAQIAPDRPAVIVA---ETG----EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYIT   77 (501)
T ss_pred             hhhhhCCCCcEEEec---CCC----eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEe
Confidence            467889999999864   322    5899999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecHHHHHhcCcc
Q 005867          130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV  209 (673)
Q Consensus       130 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (673)
                      |+++.++++++.++++.++++++++++......... .   ......+.+.....           ....+.+...... 
T Consensus        78 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~---~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~-  141 (501)
T PRK13390         78 AINHHLTAPEADYIVGDSGARVLVASAALDGLAAKV-G---ADLPLRLSFGGEID-----------GFGSFEAALAGAG-  141 (501)
T ss_pred             ccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHh-h---hccceEEEecCccc-----------ccccHHHHhcccC-
Confidence            999999999999999999999999987543322111 0   00111111111000           1112333222110 


Q ss_pred             CCccCCCCCCCceEEEEeccCCCCCcceeee--chHHHHHHHh----hhhhhhccccCCCCCCcEEEEecchHhHHHHHH
Q 005867          210 NEMEILPPQPFNICTIMYTSGTSGDPKGVVL--THETIATFVS----GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI  283 (673)
Q Consensus       210 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~--th~~l~~~~~----~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~  283 (673)
                          ......++.++++|||||||.||+|.+  +|.++.....    .....+     .+..++++++.+|++|.+++..
T Consensus       142 ----~~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~~~~~  212 (501)
T PRK13390        142 ----PRLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFY-----DISESDIYYSSAPIYHAAPLRW  212 (501)
T ss_pred             ----CCCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHh-----CCCCCCeEEecccchhhhHHHH
Confidence                011122357999999999999999995  4555443211    111122     6788999999999999998876


Q ss_pred             hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCc
Q 005867          284 EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ  362 (673)
Q Consensus       284 ~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (673)
                      ....+..|+++++.+. ++..+++.++++++|++.++|+++..+.....+..                            
T Consensus       213 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------------  264 (501)
T PRK13390        213 CSMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVR----------------------------  264 (501)
T ss_pred             HHHHHhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhc----------------------------
Confidence            5556778999988776 89999999999999999999999988764211100                            


Q ss_pred             CCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCccccCCcCCCc
Q 005867          363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS  442 (673)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~  442 (673)
                             ....        .+++|.+++||+++++++.+.+.+.++.++++.||+||+++++...........+++|.|+
T Consensus       265 -------~~~~--------~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~  329 (501)
T PRK13390        265 -------TRYD--------VSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSV  329 (501)
T ss_pred             -------ccCC--------hhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecchhhccCCCCcCCcc
Confidence                   0000        1388999999999999999999998899999999999998765443322223347899999


Q ss_pred             cceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhcc---CCccccCceEEECCCCcEEEeecCCCeE
Q 005867          443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---DGWFHTGDIGQILPNGVVKIIDRKKNLI  519 (673)
Q Consensus       443 ~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~---~g~~~TGDlg~~~~~G~l~~~GR~~d~i  519 (673)
                      ++ .+++++ +++.  +++.|+.|||+++|+.++.||+++++.+...|.   ++|++|||+|++|++|.+++.||.||+|
T Consensus       330 ~g-~~~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i  405 (501)
T PRK13390        330 LG-DLHICD-DDGN--ELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMI  405 (501)
T ss_pred             cc-eEEEEC-CCCC--CCCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccce
Confidence            99 689888 5544  456778999999999999999999999988873   6799999999999999999999999999


Q ss_pred             EcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHH
Q 005867          520 KISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE  596 (673)
Q Consensus       520 ~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (673)
                      ++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.+++++++..+..                 ...+..    ++
T Consensus       406 ~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~-----------------~~~~~~----~~  463 (501)
T PRK13390        406 IS-GGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIR-----------------GSDELA----RE  463 (501)
T ss_pred             eE-CCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCC-----------------cchhhH----HH
Confidence            96 7999999999999999999999999997764   47888888765321                 001111    22


Q ss_pred             HHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 005867          597 LKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  654 (673)
Q Consensus       597 l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~  654 (673)
                      |.++++ .+             ||.|++|..+++++.      +|+|++||++|++|+
T Consensus       464 l~~~~~-~~-------------l~~~~~P~~~~~~~~------iP~t~~GKi~r~~L~  501 (501)
T PRK13390        464 LIDYTR-SR-------------IAHYKAPRSVEFVDE------LPRTPTGKLVKGLLR  501 (501)
T ss_pred             HHHHHH-Hh-------------cccCCCCcEEEEecc------CCCCCccceehhhcC
Confidence            222332 13             999999999999833      369999999999874

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=7.4e-57  Score=499.30  Aligned_cols=484  Identities=19%  Similarity=0.206  Sum_probs=389.4

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      ++++.++|+++|+.+|+++|+...    +     +++||.||.+++.++|..|.+.|+.+|++|+++++|+.++++++||
T Consensus         1 ~~~~~~~l~~~a~~~p~~~~~~~~----~-----~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a   71 (503)
T PRK04813          1 IMDIIETIEEFAQTQPDFPAYDYL----G-----EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLG   71 (503)
T ss_pred             CchHHHHHHHHHHhCCCceEEEeC----C-----cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            467899999999999999998764    3     4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecH
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  200 (673)
                      |+++|++++|+++.++.+.+.++++..+++++++++......        ... .                     .+.+
T Consensus        72 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~---------------------~~~~  121 (503)
T PRK04813         72 AVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLEI--------LGI-P---------------------VITL  121 (503)
T ss_pred             HHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEecccccccc--------cCC-c---------------------EEeh
Confidence            999999999999999999999999999999999987641100        001 0                     1111


Q ss_pred             HHHHhcC--ccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhH
Q 005867          201 DEFLHLG--KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (673)
Q Consensus       201 ~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~  278 (673)
                      +++....  ...........++++++++|||||||.||+|.++|+++...+......+     .+..++++++..|++|.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~  196 (503)
T PRK04813        122 DELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDF-----ALPEGPQFLNQAPYSFD  196 (503)
T ss_pred             HHhhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHc-----CCCcCceeeecCCcchh
Confidence            1111110  0111112344678899999999999999999999999998888776655     67889999999999999


Q ss_pred             HHHHHhHHHhhcCcEEEEecC----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 005867          279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (673)
Q Consensus       279 ~gl~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (673)
                      .++...+.++..|+++++++.    ++..+++.++++++|.+..+|+++..+.......                     
T Consensus       197 ~~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~---------------------  255 (503)
T PRK04813        197 LSVMDLYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFN---------------------  255 (503)
T ss_pred             HhHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccC---------------------
Confidence            998778888999999998775    7899999999999999999999987654321100                     


Q ss_pred             HhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCCCC--
Q 005867          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE--  431 (673)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~~--  431 (673)
                                              ...++++|.++++|+++++.+.+.+.+.+ +.++++.||+||++..++......  
T Consensus       256 ------------------------~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~  311 (503)
T PRK04813        256 ------------------------EEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEM  311 (503)
T ss_pred             ------------------------cccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccc
Confidence                                    01124899999999999999999999988 789999999999986554332211  


Q ss_pred             --ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhcc--CC--ccccCceEEECC
Q 005867          432 --MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--DG--WFHTGDIGQILP  505 (673)
Q Consensus       432 --~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~--~g--~~~TGDlg~~~~  505 (673)
                        .....++|.+.++++++|++ +++.  +++.|+.|||+++|+.++.||+++++.+...|.  +|  ||+|||+|++ .
T Consensus       312 ~~~~~~~~~g~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~  387 (503)
T PRK04813        312 LDQYKRLPIGYAKPDSPLLIID-EEGT--KLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-E  387 (503)
T ss_pred             cccCCCCcccccCCCCEEEEEC-CCCC--CCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-e
Confidence              12335799999999999998 5554  445568999999999999999999999988873  34  9999999999 8


Q ss_pred             CCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHH
Q 005867          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLE  582 (673)
Q Consensus       506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~  582 (673)
                      +|++++.||.+|+|++ +|++++|.+||+++..+|+|.+++|++.+++   +.+++++++.++...              
T Consensus       388 ~g~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--------------  452 (503)
T PRK04813        388 DGLLFYQGRIDFQIKL-NGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFE--------------  452 (503)
T ss_pred             CCeEEEeccccceEEE-CcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEecccccc--------------
Confidence            9999999999999997 8999999999999999999999999985533   478888887764210              


Q ss_pred             HhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 005867          583 LCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  658 (673)
Q Consensus       583 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~  658 (673)
                        ...++.    +.+++++. ++             |+.|.+|+.+.+++      .+|+|++||++|++|++++.
T Consensus       453 --~~~~~~----~~l~~~~~-~~-------------l~~~~~P~~i~~~~------~~P~t~~gKv~r~~l~~~~~  502 (503)
T PRK04813        453 --REFELT----KAIKKELK-ER-------------LMEYMIPRKFIYRD------SLPLTPNGKIDRKALIEEVN  502 (503)
T ss_pred             --ccchhH----HHHHHHHH-hh-------------CccccCCeEEEEec------cCCCCCCCCCcHHHHHHHhc
Confidence              111222    23333333 23             99999999999883      23699999999999998875

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=7.1e-58  Score=599.33  Aligned_cols=492  Identities=21%  Similarity=0.266  Sum_probs=398.6

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (673)
Q Consensus        40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l  119 (673)
                      ...++.++|+.+|+++||++|+++.   +      +++||+||.++++++|+.|.+.|+++|++|++++++++++++++|
T Consensus       510 ~~~~~~~~~~~~a~~~pd~~Al~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~l  580 (3956)
T PRK12467        510 APDCVHQLIEAQARQHPERPALVFG---E------QVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLL  580 (3956)
T ss_pred             CCCCHHHHHHHHHHHCCCCeEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            3478999999999999999999875   3      479999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceec
Q 005867          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (673)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  199 (673)
                      ||+++|++++|+++.++.+++.++++++++++++++......+..     .... .++.++...                
T Consensus       581 ail~aG~~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~~~~-~~~~~~~~~----------------  638 (3956)
T PRK12467        581 AVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLAQLPV-----PAGL-RSLCLDEPA----------------  638 (3956)
T ss_pred             HHHHhCcEEeccCCCChHHHHHHHHHhcCCCEEEechhhhhhccc-----ccCc-cEEEecccc----------------
Confidence            999999999999999999999999999999999999854432210     0111 122222110                


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHH
Q 005867          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (673)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~  279 (673)
                        +..... ....+.....++++++++|||||||.||||+++|+++.+.+......+     ++..+++++++.|++|..
T Consensus       639 --~~~~~~-~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~  710 (3956)
T PRK12467        639 --DLLCGY-SGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERL-----QLAADDSMLMVSTFAFDL  710 (3956)
T ss_pred             --cccccc-CCCCCCCCCCCCCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhc-----CCCCCCEEEEecCccHhH
Confidence              000000 111122345789999999999999999999999999999998887777     788999999999999999


Q ss_pred             HHHHhHHHhhcCcEEEEecC----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 005867          280 DRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (673)
Q Consensus       280 gl~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (673)
                      ++..++.++..|+++++.+.    ++..+++.|+++++|++.++|+++..+.+.....                      
T Consensus       711 ~~~~~~~~L~~G~~lv~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~----------------------  768 (3956)
T PRK12467        711 GVTELFGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVA----------------------  768 (3956)
T ss_pred             HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHhhhccc----------------------
Confidence            99889999999999999874    8899999999999999999999999886531100                      


Q ss_pred             hhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCCCCcc-
Q 005867          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMC-  433 (673)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~~~~-  433 (673)
                                               ...++|.+++|||++++++.+.|.+.+ +++++|.||+||++..++........ 
T Consensus       769 -------------------------~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~  823 (3956)
T PRK12467        769 -------------------------LPRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEER  823 (3956)
T ss_pred             -------------------------cCCcccEEEEEeecCCHHHHHHHHHhCCCCEEEeCcCCChhhhheeeEecccccc
Confidence                                     013779999999999999999998876 78999999999999876654432211 


Q ss_pred             --ccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhcc--------CCccccCceEEE
Q 005867          434 --MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--------DGWFHTGDIGQI  503 (673)
Q Consensus       434 --~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~--------~g~~~TGDlg~~  503 (673)
                        ...++|+|+++++++|+| +++.  +++.|+.|||+|+|++++.||+++|+.|.+.|.        ++||+|||+|++
T Consensus       824 ~~~~~~iG~p~~~~~~~i~d-~~~~--~vp~G~~GEL~i~G~~v~~GYl~~p~~T~~~F~~~p~~~~g~r~yrTGDl~~~  900 (3956)
T PRK12467        824 DFGNVPIGQPLANLGLYILD-HYLN--PVPVGVVGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARY  900 (3956)
T ss_pred             cCCCCcccCCcCCCEEEEEC-CCCC--CCCCCCceEEEecccccchhhcCCccccHhhCcCCCCCCCCceeEecCceeEE
Confidence              125799999999999998 5554  556678999999999999999999999999882        239999999999


Q ss_pred             CCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCC--CCeEEEEEecChhHHHHHHHHcCCCCcHH
Q 005867          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFL  581 (673)
Q Consensus       504 ~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~  581 (673)
                      ++||.++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.++  .+.++|++++.....       .....  
T Consensus       901 ~~dG~l~~~GR~d~~vki-~G~rI~~~eIE~~L~~~p~V~~a~v~~~~~~~~~~lva~vv~~~~~~-------~~~~~--  970 (3956)
T PRK12467        901 RADGVIEYLGRMDHQVKI-RGFRIELGEIEARLLAQPGVREAVVLAQPGDAGLQLVAYLVPAAVAD-------GAEHQ--  970 (3956)
T ss_pred             cCCCcEEEeccccCeEEE-CCEecCHHHHHHHHHhCCCcceEEEEEEcCCCCcEEEEEEEeccccc-------ccccc--
Confidence            999999999999999998 799999999999999999999999998543  247999998653210       00000  


Q ss_pred             HHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 005867          582 ELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  660 (673)
Q Consensus       582 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~  660 (673)
                        ....++++.+.+         .             ||.|++|..+++++      .+|+|++||++|++|.+.+...
T Consensus       971 --~~~~~l~~~l~~---------~-------------Lp~y~vP~~~~~l~------~lP~t~~GKidR~~L~~~~~~~ 1019 (3956)
T PRK12467        971 --ATRDELKAQLRQ---------V-------------LPDYMVPAHLLLLD------SLPLTPNGKLDRKALPKPDASA 1019 (3956)
T ss_pred             --cCHHHHHHHHHh---------h-------------CchhcCCceEeeec------ccCCCCCCCcCHhhcCCccccc
Confidence              011233333333         2             99999999999883      3469999999999998765443

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=8.8e-58  Score=603.78  Aligned_cols=488  Identities=17%  Similarity=0.152  Sum_probs=396.2

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      ..+++++|..+++++||++|+++.   ++      .+||+||.++++++|+.|.+.|+++|++|+|++++++++++++||
T Consensus      3719 ~~~~~~~~~~~~~~~p~~~Av~~~---~~------~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~la 3789 (4334)
T PRK05691       3719 EQSYVRLFEAQVAAHPQRIAASCL---DQ------QWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVG 3789 (4334)
T ss_pred             ccCHHHHHHHHHHhCCCceEEEcC---CC------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            469999999999999999999986   54      699999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhccccccc-ccceEEEEeCCCcHHHHHHHhhCCCceec
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA-QRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  199 (673)
                      ++++|++++||+|.++.+++.++++.+++++++++............... .....++..+.                  
T Consensus      3790 vlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 3851 (4334)
T PRK05691       3790 SFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEE------------------ 3851 (4334)
T ss_pred             HHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeecc------------------
Confidence            99999999999999999999999999999999999875433211111000 00011111111                  


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHH
Q 005867          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (673)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~  279 (673)
                         ..........+.....+++++|++|||||||.||||+++|+++++.+......+     +++++++++...++++..
T Consensus      3852 ---~~~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~fd~ 3923 (4334)
T PRK05691       3852 ---VQAGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL-----ALSEADVIAQTASQSFDI 3923 (4334)
T ss_pred             ---cccccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhc-----CCCccceEEEecCCchhH
Confidence               111010111222345789999999999999999999999999999998887777     899999999999999999


Q ss_pred             HHHHhHHHhhcCcEEEEecC----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 005867          280 DRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (673)
Q Consensus       280 gl~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (673)
                      ++..++.++..|+++++++.    ++..+.+.++++++|++.++|+++..+......                       
T Consensus      3924 s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~----------------------- 3980 (4334)
T PRK05691       3924 SVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDRQ----------------------- 3980 (4334)
T ss_pred             HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhccc-----------------------
Confidence            99999999999999999875    789999999999999999999999877542110                       


Q ss_pred             hhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCCCC---
Q 005867          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---  431 (673)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~~---  431 (673)
                                               .+++||.+++|||++++++.+.|.+.+ +++++|.||+|||+..++......   
T Consensus      3981 -------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~ 4035 (4334)
T PRK05691       3981 -------------------------ALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLAST 4035 (4334)
T ss_pred             -------------------------cCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccc
Confidence                                     014899999999999999999987765 789999999999998766543322   


Q ss_pred             ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhcc--------CCccccCceEEE
Q 005867          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--------DGWFHTGDIGQI  503 (673)
Q Consensus       432 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~--------~g~~~TGDlg~~  503 (673)
                      .....++|+|++++++.|+| +.+.  +++.|..|||+|+|+.+++||+++|+.|+++|.        ++||+|||+|++
T Consensus      4036 ~~~~~~iG~p~~~~~~~v~d-~~~~--~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~ 4112 (4334)
T PRK05691       4036 RGSYLPIGSPTDNNRLYLLD-EALE--LVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARR 4112 (4334)
T ss_pred             cCCcCCCCCccCCCEEEEEC-CCCC--CCCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCcceee
Confidence            11224799999999999998 5555  455568999999999999999999999999982        369999999999


Q ss_pred             CCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecC--CCCeEEEEEecChhHHHHHHHHcCCCCcHH
Q 005867          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDS--LKSMLVAVVVPCEEDTKKWAYSNGHAGSFL  581 (673)
Q Consensus       504 ~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~--~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~  581 (673)
                      ++||.++++||.|++||+ +|++|.+.+||++|.++|+|.+|+|+...  ..+.++|+++......              
T Consensus      4113 ~~dG~l~~~GR~d~qvki-~G~riel~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~~~~~~~~~-------------- 4177 (4334)
T PRK05691       4113 RSDGVLEYVGRIDHQVKI-RGYRIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGYLVPHQTVL-------------- 4177 (4334)
T ss_pred             cCCCcEEEecccCCcEEe-ceEEecHHHHHHHHHhCCCccEEEEEEecCCCCcEEEEEEeCCcccc--------------
Confidence            999999999999999998 79999999999999999999999987533  2358999999875421              


Q ss_pred             HHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 005867          582 ELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  656 (673)
Q Consensus       582 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~  656 (673)
                         ....+.+.+++    .++ ++             ||.|++|..++.++      .+|+|++||++|++|.+.
T Consensus      4178 ---~~~~~~~~l~~----~l~-~~-------------Lp~ymvP~~~~~~~------~lP~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691       4178 ---AQGALLERIKQ----RLR-AE-------------LPDYMVPLHWLWLD------RLPLNANGKLDRKALPAL 4225 (4334)
T ss_pred             ---cchHHHHHHHH----HHH-hh-------------CChhhcCcceeecc------cCCCCCCCcccHhhcCCC
Confidence               11122222332    322 23             99999999998873      346999999999999764

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=2.2e-56  Score=541.00  Aligned_cols=496  Identities=18%  Similarity=0.164  Sum_probs=382.6

Q ss_pred             CCcHHHHHHHHHHhCC-CCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYP-GNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~p-d~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l  119 (673)
                      ..++.+.|.++++++| ++.|+.+.   ++     +++||+||.++++++|+.|.+ |+++||+|+++++|+++++++++
T Consensus       630 ~~~~~~~l~~~~~~~~~~~~ai~~~---~~-----~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~l  700 (1140)
T PRK06814        630 DRTLFEALIEAAKIHGFKKLAVEDP---VN-----GPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFF  700 (1140)
T ss_pred             cCCHHHHHHHHHHHcCCCCeEeECC---CC-----CccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHH
Confidence            5678888888888886 55666542   22     579999999999999999975 99999999999999999999999


Q ss_pred             HHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhc-ccccccccceEEEEeCCCcHHHHHHHhhCCCcee
Q 005867          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS-PDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (673)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  198 (673)
                      ||+++|++++|+++..+.+++.+++++++++++|+++........ ...........++.+++....        .....
T Consensus       701 a~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~~  772 (1140)
T PRK06814        701 ALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQ--------IGLAD  772 (1140)
T ss_pred             HHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhcc--------CChHH
Confidence            999999999999999999999999999999999998765443210 000111112233333321100        00000


Q ss_pred             cHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhH
Q 005867          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (673)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~  278 (673)
                      .+.+...... .........++++++++|||||||.||+|.++|+++.+.+......+     +...+|++++.+|++|.
T Consensus       773 ~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~  846 (1140)
T PRK06814        773 KIKGLLAGRF-PLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-----DFSPEDKVFNALPVFHS  846 (1140)
T ss_pred             HHHHHhhccC-CccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhh-----CCCCcCEEEEecchHHH
Confidence            1111111110 11111135789999999999999999999999999999888877666     78889999999999999


Q ss_pred             HHHH-HhHHHhhcCcEEEEecC--CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 005867          279 LDRV-IEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (673)
Q Consensus       279 ~gl~-~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (673)
                      +++. ..+.++..|+++++.+.  +...+.+.++++++|++.++|+++..+.+...                        
T Consensus       847 ~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~------------------------  902 (1140)
T PRK06814        847 FGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYAH------------------------  902 (1140)
T ss_pred             HHHHHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcc------------------------
Confidence            9985 46678999999998775  66778899999999999999999887654210                        


Q ss_pred             hhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCcccc
Q 005867          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV  435 (673)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~  435 (673)
                                             ....+++|.+++||+++++++.+.+.+.+++++++.||+||++..+....... ...
T Consensus       903 -----------------------~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~  958 (1140)
T PRK06814        903 -----------------------PYDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMH-NKA  958 (1140)
T ss_pred             -----------------------cccccceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCCC-CCC
Confidence                                   00114899999999999999999999989999999999999998766544322 234


Q ss_pred             CCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhh-hhccCCccccCceEEECCCCcEEEeec
Q 005867          436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR-ESIIDGWFHTGDIGQILPNGVVKIIDR  514 (673)
Q Consensus       436 ~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~-~~~~~g~~~TGDlg~~~~~G~l~~~GR  514 (673)
                      +++|+|++++++++.+. ++      .++.|||+++|+.++.||+++++... ....+|||+|||+|++|+||++++.||
T Consensus       959 ~~vG~p~~g~~~~~~~~-~~------~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR 1031 (1140)
T PRK06814        959 GTVGRLLPGIEYRLEPV-PG------IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGR 1031 (1140)
T ss_pred             CcCCccCCCCeEEEeec-CC------CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEEec
Confidence            79999999999999873 21      24579999999999999998764332 223589999999999999999999999


Q ss_pred             CCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHH
Q 005867          515 KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQN  591 (673)
Q Consensus       515 ~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  591 (673)
                      .||+|++ +|++|+|.+||+++.+|+.|.+|+|++.+++   +.+++++...+ .                  +.+    
T Consensus      1032 ~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~~~~-~------------------~~~---- 1087 (1140)
T PRK06814       1032 AKRFAKI-AGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTTASD-A------------------TRA---- 1087 (1140)
T ss_pred             ccCeeee-CCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEcCCC-c------------------CHH----
Confidence            9999997 8999999999999999999999999997654   35555544221 1                  222    


Q ss_pred             HHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 005867          592 YILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  661 (673)
Q Consensus       592 ~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~  661 (673)
                          ++.+++++.+             ||+|++|+.+.+++      .+|+|++||++|++|++++.+..
T Consensus      1088 ----~l~~~~~~~~-------------l~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~~~~~~~ 1134 (1140)
T PRK06814       1088 ----AFLAHAKAAG-------------ASELMVPAEIITID------EIPLLGTGKIDYVAVTKLAEEAA 1134 (1140)
T ss_pred             ----HHHHHHHHcC-------------CCcccCCcEEEEec------CcCCCCCCCCcHHHHHHHHHHhh
Confidence                2333333334             99999999999883      34699999999999998877654

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.1e-56  Score=494.63  Aligned_cols=505  Identities=20%  Similarity=0.201  Sum_probs=389.5

Q ss_pred             cHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHHH
Q 005867           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN  122 (673)
Q Consensus        43 tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~~  122 (673)
                      ||.++|+++|+++||++|+++.    +     +.+||.||.++++++|..|.+.|+++||+|+++++|++++++++|||+
T Consensus         4 ~l~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~   74 (533)
T PRK07798          4 NIADLFEAVADAVPDRVALVCG----D-----RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAF   74 (533)
T ss_pred             cHHHHHHHHHHhCCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            7999999999999999999874    3     589999999999999999999999999999999999999999999999


Q ss_pred             hcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecHHH
Q 005867          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE  202 (673)
Q Consensus       123 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (673)
                      ++|++++|+++.++.+++.++++.+++++++++......+.+.. ........++.+++....      .......++.+
T Consensus        75 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  147 (533)
T PRK07798         75 KARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVL-PRLPKLRTLVVVEDGSGN------DLLPGAVDYED  147 (533)
T ss_pred             hcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHh-ccCCCccEEEEecCCccc------ccCCccccHHH
Confidence            99999999999999999999999999999999987666554432 222344455555433211      01112446666


Q ss_pred             HHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccc----cCCC------CCCcEEEEe
Q 005867          203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF----EDKM------TVDDVYLSF  272 (673)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~----~~~~------~~~d~~l~~  272 (673)
                      ++....... .... ..++.++++|||||||.||+|+++|+++..........+...    ...+      ..+++++..
T Consensus       148 ~~~~~~~~~-~~~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (533)
T PRK07798        148 ALAAGSPER-DFGE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPA  225 (533)
T ss_pred             HHhccCCcC-CCCC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEe
Confidence            665432211 1112 233457999999999999999999999987655433221000    0011      567899999


Q ss_pred             cchHhHHHHHHhHHHhhcCcEEEEec--C-CHHHHHHHhhhccCeEEEcchHHHHH-HHHHHHHHHHhhchHHHHHHHHH
Q 005867          273 LPLAHILDRVIEEYFFRRGASVGYYH--G-DLNALRDDLMELKPTLLAGVPRVFEK-IHEGIKKALEELRPLRRRIFDAL  348 (673)
Q Consensus       273 ~p~~~~~gl~~~~~~l~~G~~~v~~~--~-~~~~~~~~i~~~~~t~l~~~P~~~~~-l~~~~~~~~~~~~~~~~~~~~~~  348 (673)
                      +|++|..++...+.++..|+++++.+  . ++..++..++++++|.+.++|..+.. +...+. .               
T Consensus       226 ~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~-~---------------  289 (533)
T PRK07798        226 PPLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALE-A---------------  289 (533)
T ss_pred             cchhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhc-c---------------
Confidence            99999999988888999999999998  4 89999999999999999999876643 222111 0               


Q ss_pred             HHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCccccc
Q 005867          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVC  427 (673)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~  427 (673)
                                                  .....++++|.+++||+++++++.++|.+.+ +.++++.||+||++......
T Consensus       290 ----------------------------~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~  341 (533)
T PRK07798        290 ----------------------------RGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGT  341 (533)
T ss_pred             ----------------------------cccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccC
Confidence                                        0001125899999999999999999999888 78999999999997655443


Q ss_pred             CCCCccccCCcC--CCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhcc--C--CccccCceE
Q 005867          428 FPDEMCMVGTAG--PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--D--GWFHTGDIG  501 (673)
Q Consensus       428 ~~~~~~~~~~~G--~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~--~--g~~~TGDlg  501 (673)
                      .....   ...|  .+.++..+++++ +++...+.+....|+|+ .++.++.||+++++.+...|.  +  +||+|||+|
T Consensus       342 ~~~~~---~~~g~~~~~~~~~~~i~~-~~~~~~~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~  416 (533)
T PRK07798        342 VAKGA---VHTGGPRFTIGPRTVVLD-EDGNPVEPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRA  416 (533)
T ss_pred             CCCCC---ccCCCCccCCCceEEEEC-CCCCCCCCCCCCeeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCcEE
Confidence            22211   2333  778899999998 66664444322226665 556899999999999988883  2  599999999


Q ss_pred             EECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCC
Q 005867          502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAG  578 (673)
Q Consensus       502 ~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~  578 (673)
                      ++|++|++++.||.+|+|+. +|.+|+|.+||++|.++|+|.+|+|++.++.   +.+++++++.++..           
T Consensus       417 ~~~~~g~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-----------  484 (533)
T PRK07798        417 RVEADGTITLLGRGSVCINT-GGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGAR-----------  484 (533)
T ss_pred             EEcCCCcEEEEccccceEec-CCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCCCC-----------
Confidence            99999999999999999996 8999999999999999999999999986643   46888888775321           


Q ss_pred             cHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 005867          579 SFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  658 (673)
Q Consensus       579 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~  658 (673)
                           .+..++.+++++.                      |+.|++|+.+++++      .+|+|++||++|+.|+++.+
T Consensus       485 -----~~~~~l~~~l~~~----------------------l~~~~~P~~i~~~~------~iP~t~~GK~~~~~~~~~~~  531 (533)
T PRK07798        485 -----PDLAELRAHCRSS----------------------LAGYKVPRAIWFVD------EVQRSPAGKADYRWAKEQAA  531 (533)
T ss_pred             -----CCHHHHHHHHhhh----------------------cccCCCCeEEEEcc------cCCCCCcchhhHHHHhhhhc
Confidence                 0223444444433                      99999999999873      33699999999999999876


Q ss_pred             H
Q 005867          659 V  659 (673)
Q Consensus       659 ~  659 (673)
                      +
T Consensus       532 ~  532 (533)
T PRK07798        532 E  532 (533)
T ss_pred             c
Confidence            5

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-56  Score=504.09  Aligned_cols=503  Identities=21%  Similarity=0.251  Sum_probs=379.8

Q ss_pred             CCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH
Q 005867           33 GFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP  112 (673)
Q Consensus        33 ~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~  112 (673)
                      .+|....+.+++.++|+..++++|+..++ .     ..++.++.+||.||..++.++|.+|++.|+++||+|+++++|++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~   85 (579)
T PRK09192         12 SLPRRYADFPTLVEALDYAALGEAGMNFY-D-----RRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDG   85 (579)
T ss_pred             cccccccchhhHHHHHHHhhccCCceEEE-e-----cCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCch
Confidence            45666678899999999999988865543 2     22334578999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCCeEeeCCCCCC-------hhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHH
Q 005867          113 QWVEAMEACNALSLICVPLYDTLG-------PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAE  185 (673)
Q Consensus       113 e~~~~~lA~~~~G~~~vpl~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  185 (673)
                      ++++++|||+++|++++|+++..+       .+++.++++.++++++|+++.....+..... .. ..  .         
T Consensus        86 ~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~-~~-~~--~---------  152 (579)
T PRK09192         86 DFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATH-GN-PL--L---------  152 (579)
T ss_pred             hHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhc-cc-cc--c---------
Confidence            999999999999999999976433       5789999999999999999876554432211 00 00  0         


Q ss_pred             HHHHHhhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhh-hhccccCCCC
Q 005867          186 QKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL-FLDQFEDKMT  264 (673)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~-~~~~~~~~~~  264 (673)
                                ...++.++.... ..........++++++++|||||||.||+|.++|++++..+..... .+     ++.
T Consensus       153 ----------~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-----~~~  216 (579)
T PRK09192        153 ----------HVLSHAWFKALP-EADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGL-----KVR  216 (579)
T ss_pred             ----------ceeehhhhcccC-CCccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcc-----cCC
Confidence                      011233332221 1111223356789999999999999999999999999988877655 44     788


Q ss_pred             CCcEEEEecchHhHHHHHH-hHHHhhcCcEEEEecC-----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhc
Q 005867          265 VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR  338 (673)
Q Consensus       265 ~~d~~l~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~  338 (673)
                      .+|+++.++|++|.+|+.. ++.++..|+++++.+.     ++..+++.+.++++++++.+|..+..+.......     
T Consensus       217 ~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~-----  291 (579)
T PRK09192        217 PGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSK-----  291 (579)
T ss_pred             CCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccc-----
Confidence            8999999999999999875 4456888999877652     6888999999999998887665555443211000     


Q ss_pred             hHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcC------Ccee
Q 005867          339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLV  412 (673)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g------~~v~  412 (673)
                                                   ....+++        +++|.+++||+++++.+.+.|.+.++      ..++
T Consensus       292 -----------------------------~~~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~  334 (579)
T PRK09192        292 -----------------------------DLAELDL--------SCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFM  334 (579)
T ss_pred             -----------------------------cccccch--------hhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcc
Confidence                                         0000111        38999999999999999999888763      3489


Q ss_pred             eecCCCCCCCcccccCCCCc---------------------------cccCCcCCCccceeEEEeecCCCCCCCCCCCCC
Q 005867          413 QGYGLTETCGPTTVCFPDEM---------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC  465 (673)
Q Consensus       413 ~~YG~tE~~~~~~~~~~~~~---------------------------~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~  465 (673)
                      +.||+||+++.++.......                           ....++|.++++++++|++ +++.  .++.++.
T Consensus       335 ~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~--~~~~g~~  411 (579)
T PRK09192        335 PSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGM--PLPERVV  411 (579)
T ss_pred             cccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-CCCC--CCCCCCE
Confidence            99999999876554332110                           0124789999999999999 5554  3455689


Q ss_pred             ceEEEecCCccccccCCchhhhhhc-cCCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcc-
Q 005867          466 GEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE-  543 (673)
Q Consensus       466 GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~-  543 (673)
                      |||+++|+.++.||+++ ..+...+ .+|||+|||+|++ ++|+++++||.+|+|++ +|++|+|.+||++|.+||+|. 
T Consensus       412 Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~  488 (579)
T PRK09192        412 GHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIII-NGRNIWPQDIEWIAEQEPELRS  488 (579)
T ss_pred             EEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccccEEEE-CCCccCHHHHHHHHHhcCCccC
Confidence            99999999999999999 5555555 7899999999999 89999999999999997 899999999999999999998 


Q ss_pred             -eEEEEecCCC--CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCc
Q 005867          544 -DIWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLR  620 (673)
Q Consensus       544 -~~~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp  620 (673)
                       +|+|++.+++  +.++++++..+....                +..++.+.+.+.    +.                 +
T Consensus       489 ~~~~v~~~~~~~~~~~~~~v~~~~~~~~----------------~~~~l~~~~~~~----l~-----------------~  531 (579)
T PRK09192        489 GDAAAFSIAQENGEKIVLLVQCRISDEE----------------RRGQLIHALAAL----VR-----------------S  531 (579)
T ss_pred             CcEEEEEeccCCCeeEEEEEEecCCChH----------------HHHHHHHHHHHH----HH-----------------H
Confidence             8999886654  367777776543210                122333333332    21                 2


Q ss_pred             cceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 005867          621 GFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  659 (673)
Q Consensus       621 ~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~  659 (673)
                      .+.+|..+.++.    .+.+|+|++||++|++|+++|..
T Consensus       532 ~~~~~~~i~~~~----~~~lP~t~~GKv~R~~l~~~~~~  566 (579)
T PRK09192        532 EFGVEAAVELVP----PHSLPRTSSGKLSRAKAKKRYLS  566 (579)
T ss_pred             HhCCCceEEEeC----CCCcCCCCCcchhHHHHHHHHHc
Confidence            466677777763    23467999999999999999876

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.5e-56  Score=492.22  Aligned_cols=495  Identities=20%  Similarity=0.179  Sum_probs=381.1

Q ss_pred             HHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHHHhcCCeE
Q 005867           49 SMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLIC  128 (673)
Q Consensus        49 ~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~  128 (673)
                      ..+|+++||++|+++.   ++.    +.+||.||.+++.++|.+|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus         4 ~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~   76 (511)
T PRK13391          4 GIHAQTTPDKPAVIMA---STG----EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYY   76 (511)
T ss_pred             hhhHhhCCCceEEEec---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEE
Confidence            4678899999999864   222    579999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecHHHHHhcCc
Q 005867          129 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK  208 (673)
Q Consensus       129 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (673)
                      +|+++.++.+.+.++++.++++.++++......+..... ........+.......         ......+.+..... 
T Consensus        77 ~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-  145 (511)
T PRK13391         77 TCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLK-QCPGVRHRLVLDGDGE---------LEGFVGYAEAVAGL-  145 (511)
T ss_pred             eccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHh-cCCCceEEEEecCCCC---------CcccccHHHHhcCC-
Confidence            999999999999999999999999999876654422211 1222223333321110         01122344333221 


Q ss_pred             cCCccCCCCCCCceEEEEeccCCCCCcceeee--chHHHHHHH---hhhhhhhccccCCCCCCcEEEEecchHhHHHHHH
Q 005867          209 VNEMEILPPQPFNICTIMYTSGTSGDPKGVVL--THETIATFV---SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI  283 (673)
Q Consensus       209 ~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~--th~~l~~~~---~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~  283 (673)
                        +. ......++.++++|||||||.||+|.+  +|.++....   ......+     ++..++++++.+|++|.+++..
T Consensus       146 --~~-~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~~~~~  217 (511)
T PRK13391        146 --PA-TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLW-----GFRSDMVYLSPAPLYHSAPQRA  217 (511)
T ss_pred             --CC-CCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhc-----CCCCCCeEEEcCCHHHHHHHHH
Confidence              11 111234567899999999999999995  465553322   2222223     5678899999999999999887


Q ss_pred             hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCc
Q 005867          284 EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ  362 (673)
Q Consensus       284 ~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (673)
                      .+.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+......                            
T Consensus       218 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~----------------------------  269 (511)
T PRK13391        218 VMLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVR----------------------------  269 (511)
T ss_pred             HHHHHHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhc----------------------------
Confidence            7788999999998876 99999999999999999999999987754211100                            


Q ss_pred             CCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCccccCCcCCCc
Q 005867          363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS  442 (673)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~  442 (673)
                             +.        ..++++|.+++||+++++++.+.+++.+|..+++.||+||+++++...........+++|.|+
T Consensus       270 -------~~--------~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~  334 (511)
T PRK13391        270 -------DK--------YDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAM  334 (511)
T ss_pred             -------cc--------CCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecCccccccCCCcCCcc
Confidence                   00        012489999999999999999999998899999999999999876543332233447899999


Q ss_pred             cceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-c-CCccccCceEEECCCCcEEEeecCCCeEE
Q 005867          443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I-DGWFHTGDIGQILPNGVVKIIDRKKNLIK  520 (673)
Q Consensus       443 ~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~-~g~~~TGDlg~~~~~G~l~~~GR~~d~i~  520 (673)
                      ++ .+++++ +++.  +++.|+.|||+++|+ ++.||+++++.+...+ . ++||+|||+|+++++|.+++.||.+|+++
T Consensus       335 ~g-~~~i~d-~~~~--~~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~  409 (511)
T PRK13391        335 FG-DLHILD-DDGA--ELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMII  409 (511)
T ss_pred             cc-eEEEEC-CCCC--CCCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEE
Confidence            99 688888 5543  445668999999999 8889999999998887 3 38999999999999999999999999999


Q ss_pred             cCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHH
Q 005867          521 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL  597 (673)
Q Consensus       521 ~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  597 (673)
                      + +|.++++.+||++|.+||.|.+|+|++.++.   +.+++++++.++..                 ....+    .++|
T Consensus       410 ~-~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~-----------------~~~~~----~~~l  467 (511)
T PRK13391        410 S-GGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVD-----------------PGPAL----AAEL  467 (511)
T ss_pred             e-CCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCC-----------------cccch----HHHH
Confidence            6 8999999999999999999999999987644   36778887765321                 01111    1223


Q ss_pred             HHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 005867          598 KNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  659 (673)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~  659 (673)
                      .++++ .+             ||.|++|..|.+++.      +|+|++||++|+.|++.|.+
T Consensus       468 ~~~~~-~~-------------l~~~~~P~~i~~~~~------~P~t~~gKv~r~~l~~~~~~  509 (511)
T PRK13391        468 IAFCR-QR-------------LSRQKCPRSIDFEDE------LPRLPTGKLYKRLLRDRYWG  509 (511)
T ss_pred             HHHHH-hh-------------cccCcCCcEEEEeec------CCCCCccceeHHHHHHHhhc
Confidence            33333 23             999999999998832      36999999999999998864

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9.7e-56  Score=489.98  Aligned_cols=483  Identities=20%  Similarity=0.234  Sum_probs=377.8

Q ss_pred             eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEE
Q 005867           75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV  154 (673)
Q Consensus        75 ~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~  154 (673)
                      +.+||.||.+.+.++|++|.+.|+++||+|+++++|++++++++|||+++|++++|+++..+.+.+.++++.++++++++
T Consensus        10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~   89 (502)
T PRK08276         10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV   89 (502)
T ss_pred             cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCC
Q 005867          155 QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGD  234 (673)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~  234 (673)
                      ++.....+.............++......           .....|.+......    .......++.++++|||||||.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSGtTG~  154 (502)
T PRK08276         90 SAALADTAAELAAELPAGVPLLLVVAGPV-----------PGFRSYEEALAAQP----DTPIADETAGADMLYSSGTTGR  154 (502)
T ss_pred             ccchhhHHHHHhhhccccccEEEEeCCCC-----------CccccHHHHHhcCC----CCCCCCCCcceEEEECCCCCCC
Confidence            98766554322111111333343332111           11234444443221    1112355678999999999999


Q ss_pred             cceeeechHHHHHHHh--hhhhhhccccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEecC-CHHHHHHHhhhc
Q 005867          235 PKGVVLTHETIATFVS--GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMEL  311 (673)
Q Consensus       235 pK~v~~th~~l~~~~~--~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~  311 (673)
                      ||+|.++|.++.....  ....... .......++++++.+|++|..++...+.++..|+++++.+. ++..+++.++++
T Consensus       155 PK~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~  233 (502)
T PRK08276        155 PKGIKRPLPGLDPDEAPGMMLALLG-FGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIERY  233 (502)
T ss_pred             CceEEEccCCcchhhhhHHhhhhhh-hcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHHh
Confidence            9999999887654321  1111110 01123467899999999999998887888999999988876 899999999999


Q ss_pred             cCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEc
Q 005867          312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISG  391 (673)
Q Consensus       312 ~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~  391 (673)
                      ++|++.++|+++..+.+.....                                   .+.++        ++++|.+++|
T Consensus       234 ~~t~~~~~P~~~~~l~~~~~~~-----------------------------------~~~~~--------~~~lr~i~~~  270 (502)
T PRK08276        234 RVTHSQLVPTMFVRMLKLPEEV-----------------------------------RARYD--------VSSLRVAIHA  270 (502)
T ss_pred             CCeEEEehHHHHHHHHhCcccc-----------------------------------CCCCC--------cccceEEEec
Confidence            9999999999998876421100                                   00011        1489999999


Q ss_pred             CCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEe
Q 005867          392 GAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR  471 (673)
Q Consensus       392 G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~  471 (673)
                      |++++.++.+++.+.++..+++.||+||++.+++..........+++|.|+ ++.+++++ +++.  +++.|+.|||+++
T Consensus       271 g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~--~~~~g~~Gel~v~  346 (502)
T PRK08276        271 AAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD-EDGN--ELPPGEIGTVYFE  346 (502)
T ss_pred             CCCCCHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC-CCCC--CCcCCCceEEEEE
Confidence            999999999999998899999999999999866654443333447899999 88999998 5544  4556789999999


Q ss_pred             cCCccccccCCchhhhhhcc-CCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEec
Q 005867          472 GKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGD  550 (673)
Q Consensus       472 gp~~~~gy~~~~~~~~~~~~-~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~  550 (673)
                      |+.++.||+++++.+...+. +|||+|||+|+++++|.+++.||.+|++++ +|.++++.+||.+|.++|+|.+|+|++.
T Consensus       347 ~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~-~G~~v~~~~iE~~i~~~~~v~~~~v~~~  425 (502)
T PRK08276        347 MDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIIS-GGVNIYPQEIENLLVTHPKVADVAVFGV  425 (502)
T ss_pred             CCCccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeC
Confidence            99999999999999999884 499999999999999999999999999996 8999999999999999999999999997


Q ss_pred             CCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeE
Q 005867          551 SLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKG  627 (673)
Q Consensus       551 ~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~  627 (673)
                      .++   +.++++|++.++..                 ...++.+.+.+.++     ++             |+.+++|+.
T Consensus       426 ~~~~~~~~~~~~v~~~~~~~-----------------~~~~~~~~i~~~~~-----~~-------------l~~~~~p~~  470 (502)
T PRK08276        426 PDEEMGERVKAVVQPADGAD-----------------AGDALAAELIAWLR-----GR-------------LAHYKCPRS  470 (502)
T ss_pred             CCcccCceEEEEEEECCCCC-----------------CChhhHHHHHHHHH-----hh-------------ccCCCCCcE
Confidence            654   47999999876421                 11122222333222     23             999999999


Q ss_pred             EEEecCCCCCCCCccccccccchHHHHHHHHHHHH
Q 005867          628 VILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID  662 (673)
Q Consensus       628 i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~~  662 (673)
                      +++++.      +|+|++||++|++|++.|.+.-+
T Consensus       471 i~~~~~------lP~t~~GKi~r~~L~~~~~~~~~  499 (502)
T PRK08276        471 IDFEDE------LPRTPTGKLYKRRLRDRYWEGRQ  499 (502)
T ss_pred             EEEecC------CCCCcccchhHHHHHHHHHhhhh
Confidence            999843      36999999999999999877654

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=1.9e-56  Score=494.04  Aligned_cols=458  Identities=18%  Similarity=0.137  Sum_probs=333.4

Q ss_pred             cCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhh------hhhhcccccccccceEEEEeCC
Q 005867          108 GANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV------KELLSPDCRSAQRLRVMVCFTS  181 (673)
Q Consensus       108 ~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~v~~~~~  181 (673)
                      ++|++++++++|||+++|++++|+++.++.+++.++|+.++++++|+++...      ..+.. .... .....++....
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~-~~~~-~~~~~i~~~~~   78 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSK-VVEA-APAKAIVLPAA   78 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhh-hhhc-ccceEEEEecc
Confidence            5899999999999999999999999999999999999999999999986421      11111 0000 01122222111


Q ss_pred             CcHHHHHHHhhCCCceecHHHHHhcCcc------CCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhh
Q 005867          182 LTAEQKEMAVQTGIKPYSWDEFLHLGKV------NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF  255 (673)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~  255 (673)
                      ....    .........+|.+++.....      .........++++++|+|||||||.||||.++|++++.........
T Consensus        79 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~  154 (499)
T PLN03051         79 GEPV----AVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAH  154 (499)
T ss_pred             Cccc----CCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHh
Confidence            0000    00000112356665532110      0111112356899999999999999999999999988766554444


Q ss_pred             hccccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEecC--CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHH
Q 005867          256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA  333 (673)
Q Consensus       256 ~~~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~  333 (673)
                      +     ++..+|++++.+|++|.+++...+.++..|+++++++.  ++..+++.|+++++|++.++|+++..|.+.....
T Consensus       155 ~-----~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~  229 (499)
T PLN03051        155 M-----DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFA  229 (499)
T ss_pred             c-----CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccc
Confidence            4     67889999999999999998767778999999998874  7889999999999999999999999875421000


Q ss_pred             HHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc--CCce
Q 005867          334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFL  411 (673)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~--g~~v  411 (673)
                                                         ....+        +++||.+++||+++++++.+++.+.+  +.++
T Consensus       230 -----------------------------------~~~~~--------~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~  266 (499)
T PLN03051        230 -----------------------------------MEGLD--------WSKLRVFASTGEASAVDDVLWLSSVRGYYKPV  266 (499)
T ss_pred             -----------------------------------cccCC--------chhheEEEecCCCCCHHHHHHHHHhcccccee
Confidence                                               00001        13899999999999999998887743  4789


Q ss_pred             eeecCCCCCCCcccccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCc--cccccCCchhhhhh
Q 005867          412 VQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL--FSGYYKNPDLTRES  489 (673)
Q Consensus       412 ~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~--~~gy~~~~~~~~~~  489 (673)
                      ++.||+||++..+...........+++|.|.++++++|+| +++..++.+.++.|||+++||.+  +.||++++. + ..
T Consensus       267 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~-~-~~  343 (499)
T PLN03051        267 IEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQPCVGEVALAPPMLGASDRLLNADH-D-KV  343 (499)
T ss_pred             EeeeccccccceeecccccCCCCCccccCCCCCceEEEEC-CCCCCCCCCCCcceEEEEecCcCCCCccccCCcc-c-ce
Confidence            9999999987543322222222347899999999999999 66666655544689999999976  579997653 3 33


Q ss_pred             ccCC----------ccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhc-CcCcceEEEEecCCC----C
Q 005867          490 IIDG----------WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV-APIIEDIWVYGDSLK----S  554 (673)
Q Consensus       490 ~~~g----------~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~-~p~V~~~~v~~~~~~----~  554 (673)
                      |.+|          ||+|||+|++|+||+|+++||.||+||+ +|++|+|.+||++|.+ ||+|.+|+|++.+++    +
T Consensus       344 ~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~-~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~  422 (499)
T PLN03051        344 YYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNL-GGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPE  422 (499)
T ss_pred             eeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEee-CCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCce
Confidence            4444          6899999999999999999999999996 8999999999999986 999999999997754    3


Q ss_pred             eEEEEE---ecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEe
Q 005867          555 MLVAVV---VPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILD  631 (673)
Q Consensus       555 ~~~a~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~  631 (673)
                      .++|+|   +++++...               .+..++++++++.+.+     +             |+.+..|..|.++
T Consensus       423 ~~~a~v~~~v~~~~~~~---------------~~~~~l~~~~~~~l~~-----~-------------l~~~~~~~~i~~v  469 (499)
T PLN03051        423 LLVIFLVLGEEKKGFDQ---------------ARPEALQKKFQEAIQT-----N-------------LNPLFKVSRVKIV  469 (499)
T ss_pred             EEEEEEEcceecccccc---------------cchHHHHHHHHHHHHh-----h-------------cCCccCCceEEEc
Confidence            688888   66543200               0234455555444332     2             8876667678777


Q ss_pred             cCCCCCCCCccccccccchHHHHHHHHHHHH
Q 005867          632 PRPFDMERDLVTATLKKKRNKLLIYYQVEID  662 (673)
Q Consensus       632 ~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~~  662 (673)
                      +      .+|+|++||++|++|++.+.+.+.
T Consensus       470 ~------~lP~t~~GKi~r~~L~~~~~~~~~  494 (499)
T PLN03051        470 P------ELPRNASNKLLRRVLRDQLKKELS  494 (499)
T ss_pred             C------CCCCCCCccHHHHHHHHHHHHhhc
Confidence            3      346999999999999988766654

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7e-56  Score=499.36  Aligned_cols=515  Identities=17%  Similarity=0.190  Sum_probs=371.3

Q ss_pred             cHHHHHHHHHHhCCCCCceeeeecccCC---CCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGK---FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (673)
Q Consensus        43 tl~~~l~~~a~~~pd~~a~~~~~~~d~~---~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l  119 (673)
                      ++.++|++++..+|+++|+++.   +..   .+..+++||.||..++.++|++|.+.| .+||+|+++++|++++++++|
T Consensus         2 s~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~l   77 (578)
T PRK05850          2 SVPSLLRERASLQPDDAAFTFI---DYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFL   77 (578)
T ss_pred             cHHHHHHHHHhcCCCceEEEEE---ccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHH
Confidence            6889999999999999999875   311   122368999999999999999999999 689999999999999999999


Q ss_pred             HHHhcCCeEeeCCC---CCChhhHHHHHhccCceEEEEcchhhhhhhcccccc-cccceEEEEeCCCcHHHHHHHhhCCC
Q 005867          120 ACNALSLICVPLYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS-AQRLRVMVCFTSLTAEQKEMAVQTGI  195 (673)
Q Consensus       120 A~~~~G~~~vpl~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~  195 (673)
                      ||+++|++++|+++   ..+.+++.++|+.++++++++++.....+....... ......++..+..             
T Consensus        78 A~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  144 (578)
T PRK05850         78 GALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL-------------  144 (578)
T ss_pred             HHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc-------------
Confidence            99999999999997   457889999999999999999987665543211100 0011111111100             


Q ss_pred             ceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhh-hccccCCCCCCcEEEEecc
Q 005867          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF-LDQFEDKMTVDDVYLSFLP  274 (673)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~-~~~~~~~~~~~d~~l~~~p  274 (673)
                            ++..   ..........++++++++|||||||.||+|.++|++++..+...... +.........++++++.+|
T Consensus       145 ------~~~~---~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p  215 (578)
T PRK05850        145 ------DLDS---PRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLP  215 (578)
T ss_pred             ------cccc---CCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECC
Confidence                  0000   00011223467899999999999999999999999998877654432 1111111456789999999


Q ss_pred             hHhHHHHHH-hHHHhhcCcEEEEecC-----CHHHHHHHhhhccCeEEEcchHHH-HHHHHHHHHHHHhhchHHHHHHHH
Q 005867          275 LAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVF-EKIHEGIKKALEELRPLRRRIFDA  347 (673)
Q Consensus       275 ~~~~~gl~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~-~~l~~~~~~~~~~~~~~~~~~~~~  347 (673)
                      ++|.+|+.. .+.+++.|+++++++.     ++..++..+.+++++++ .+|..+ ..+.......              
T Consensus       216 l~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~--------------  280 (578)
T PRK05850        216 FYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDD--------------  280 (578)
T ss_pred             CCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchh--------------
Confidence            999999875 6778999999998863     68999999999999865 455543 3332211100              


Q ss_pred             HHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcC------CceeeecCCCCCC
Q 005867          348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETC  421 (673)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g------~~v~~~YG~tE~~  421 (673)
                                          ....+        .++++|.+++||+++++++.++|.+.++      ..+++.||+||++
T Consensus       281 --------------------~~~~~--------~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  332 (578)
T PRK05850        281 --------------------DMAGL--------DLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEAT  332 (578)
T ss_pred             --------------------hhcCc--------chhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhh
Confidence                                00000        1148999999999999999999988763      3689999999987


Q ss_pred             CcccccCCCCc------------------------cccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccc
Q 005867          422 GPTTVCFPDEM------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS  477 (673)
Q Consensus       422 ~~~~~~~~~~~------------------------~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~  477 (673)
                      ..+........                        ....++|.|. +.++++++ ++++ .+++.|+.|||+|+|+.++.
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd-~~~~-~~~~~g~~Gel~v~g~~~~~  409 (578)
T PRK05850        333 VYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVD-PDTC-IECPAGTVGEIWVHGDNVAA  409 (578)
T ss_pred             hheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEc-CCCC-cCCCCCCEEEEEEecCcccc
Confidence            65443221100                        0011334443 57889888 4332 44567789999999999999


Q ss_pred             cccCCchhhhhhcc------------CCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceE
Q 005867          478 GYYKNPDLTRESII------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDI  545 (673)
Q Consensus       478 gy~~~~~~~~~~~~------------~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~  545 (673)
                      ||+++++.+.+.|.            +|||+|||+|+++ +|++++.||.+|+|++ +|++|+|.+||++|.+||.+ +|
T Consensus       410 gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~-~G~~i~p~eIE~~l~~~~~~-~~  486 (578)
T PRK05850        410 GYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIV-DGRNHYPDDIEATIQEITGG-RV  486 (578)
T ss_pred             cccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEE-CCeecCHHHHHHHHHHhcCC-cE
Confidence            99999999998883            4799999999997 9999999999999997 89999999999999999995 57


Q ss_pred             EEEecCCC--CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccce
Q 005867          546 WVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFE  623 (673)
Q Consensus       546 ~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~  623 (673)
                      +|++.+++  +.++|+|++++.....        .      ........+.+.+...+..                +...
T Consensus       487 ~v~~v~~~~~~~~~a~v~~~~~~~~~--------~------~~~~~~~~l~~~v~~~l~~----------------~~~~  536 (578)
T PRK05850        487 AAISVPDDGTEKLVAIIELKKRGDSD--------E------EAMDRLRTVKREVTSAISK----------------SHGL  536 (578)
T ss_pred             EEEEecCCCceEEEEEEEeccccCcc--------h------hhhhhHHHHHHHHHHHHHH----------------HhCC
Confidence            77776654  4788999887642100        0      0011234444554444331                1233


Q ss_pred             eeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhhhc
Q 005867          624 HIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA  669 (673)
Q Consensus       624 ~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~~~ly~~~~  669 (673)
                      .|..+.+++    .+.+|+|++||++|++|+++|.+.   .|.+++
T Consensus       537 ~~~~~~~~~----~~~iP~t~~GKi~R~~l~~~~~~~---~~~~~~  575 (578)
T PRK05850        537 SVADLVLVA----PGSIPITTSGKIRRAACVEQYRQD---EFTRLD  575 (578)
T ss_pred             CceEEEEeC----CCCcCCCCCchHHHHHHHHHHHcC---Cccccc
Confidence            566677763    245679999999999999998663   366554

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1.4e-56  Score=592.44  Aligned_cols=479  Identities=20%  Similarity=0.217  Sum_probs=394.5

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      ..++.++|+.+|+++||++|+++.   +      .++||+||.+++.++|++|.+.|+++|++|++++++++++++++||
T Consensus      1130 ~~~l~~~~~~~a~~~p~~~Al~~~---~------~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~la 1200 (4334)
T PRK05691       1130 QAWLPELLNEQARQTPERIALVWD---G------GSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLA 1200 (4334)
T ss_pred             cCCHHHHHHHHHHhCCCCeEEEEC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            468999999999999999999875   4      4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecH
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  200 (673)
                      ++++|++++|+++.++.+++.++++.++++++|++......+...     ... ..+..+...                .
T Consensus      1201 ilkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~-----~~~-~~~~~~~~~----------------~ 1258 (4334)
T PRK05691       1201 ILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQA-----EGV-SAIALDSLH----------------L 1258 (4334)
T ss_pred             HHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccc-----cCc-eEEeecccc----------------c
Confidence            999999999999999999999999999999999988765433111     011 111111110                0


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHH
Q 005867          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (673)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (673)
                      .     ......+.....++++++++|||||||.||||.++|+++.+.+.+....+     ++.++++++++.|++|..+
T Consensus      1259 ~-----~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~s 1328 (4334)
T PRK05691       1259 D-----SWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATY-----ALDDSDVLMQKAPISFDVS 1328 (4334)
T ss_pred             c-----ccCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHHH
Confidence            0     00011122234678999999999999999999999999999988877766     7889999999999999999


Q ss_pred             HHHhHHHhhcCcEEEEecC----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh
Q 005867          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (673)
Q Consensus       281 l~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (673)
                      +..++.++..|+++++.+.    ++..+.+.++++++|++.++|+++..+......                        
T Consensus      1329 ~~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~------------------------ 1384 (4334)
T PRK05691       1329 VWECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLA------------------------ 1384 (4334)
T ss_pred             HHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCccc------------------------
Confidence            8888999999999999763    889999999999999999999999887542100                        


Q ss_pred             hhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCC-CCccc
Q 005867          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFP-DEMCM  434 (673)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~-~~~~~  434 (673)
                                             ...++||.+++|||++++++.+.|.+.+ +++++|.||+||++..++.... .....
T Consensus      1385 -----------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 1441 (4334)
T PRK05691       1385 -----------------------AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGE 1441 (4334)
T ss_pred             -----------------------ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccCC
Confidence                                   0114899999999999999999998877 6899999999999877654322 12223


Q ss_pred             cCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccC--------CccccCceEEECCC
Q 005867          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID--------GWFHTGDIGQILPN  506 (673)
Q Consensus       435 ~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~--------g~~~TGDlg~~~~~  506 (673)
                      ..++|+|++++.++|+| +++.  +++.|+.|||+|+|++++.||+++|+.+.+.|..        +||+|||+|++++|
T Consensus      1442 ~~~iG~p~~~~~~~i~d-~~~~--~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~d 1518 (4334)
T PRK05691       1442 RSPIGRPLGNVLCRVLD-AELN--LLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNAD 1518 (4334)
T ss_pred             CCcccceeCCCEEEEEC-CCCC--CCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECCC
Confidence            46899999999999999 5554  4556789999999999999999999999998832        49999999999999


Q ss_pred             CcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCC--CCeEEEEEecChhHHHHHHHHcCCCCcHHHHh
Q 005867          507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELC  584 (673)
Q Consensus       507 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~  584 (673)
                      |.++++||.|++||+ +|++|+|.+||++|.+||+|.+|+|+...+  ...++|+++...+..                .
T Consensus      1519 G~l~~~GR~d~qiki-~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~~~~~lva~~~~~~~~~----------------~ 1581 (4334)
T PRK05691       1519 GALEYLGRLDQQVKL-RGFRVEPEEIQARLLAQPGVAQAAVLVREGAAGAQLVGYYTGEAGQE----------------A 1581 (4334)
T ss_pred             CCEEEecccCcEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEeeCCCCCEEEEEEEeCCCCC----------------C
Confidence            999999999999998 799999999999999999999999987543  257899988765321                0


Q ss_pred             ccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 005867          585 SLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  655 (673)
Q Consensus       585 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~  655 (673)
                      ...++++++.+.                      ||.|++|..+++++      .+|+|++||++|++|.+
T Consensus      1582 ~~~~l~~~l~~~----------------------Lp~y~vP~~~~~~~------~lP~t~~GKidr~~L~~ 1624 (4334)
T PRK05691       1582 EAERLKAALAAE----------------------LPEYMVPAQLIRLD------QMPLGPSGKLDRRALPE 1624 (4334)
T ss_pred             CHHHHHHHHHHh----------------------CccccCCcEEEEcc------ccCCCCCCCcChhhcCc
Confidence            222344444433                      99999999999873      33699999999999865

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=3.6e-55  Score=486.16  Aligned_cols=481  Identities=21%  Similarity=0.223  Sum_probs=375.4

Q ss_pred             eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEE
Q 005867           75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV  154 (673)
Q Consensus        75 ~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~  154 (673)
                      +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++++++..+.+++.++++.++++++++
T Consensus        10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~   89 (509)
T PRK12406         10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA   89 (509)
T ss_pred             eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhcccccccccceEEEEeCCCcHHH--HHHH---hhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEecc
Q 005867          155 QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ--KEMA---VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS  229 (673)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS  229 (673)
                      +......+.+....   .+ .++.........  ....   .........|.+++....    ......++++++++|||
T Consensus        90 ~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TS  161 (509)
T PRK12406         90 HADLLHGLASALPA---GV-TVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE----PYDGPPVPQPQSMIYTS  161 (509)
T ss_pred             ccchhhhhhhhhhc---cc-ceeecccccccccccccccccccCCCCccCHHHHhcccC----ccCCCCCCCceEEEECC
Confidence            88766544322111   11 111111110000  0000   001123345665543321    11233568999999999


Q ss_pred             CCCCCcceeeechHHHHHH---HhhhhhhhccccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEecC-CHHHHH
Q 005867          230 GTSGDPKGVVLTHETIATF---VSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALR  305 (673)
Q Consensus       230 GTTG~pK~v~~th~~l~~~---~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~~~-~~~~~~  305 (673)
                      ||||.||+|.++|......   .......+     ++..++++++.+|++|..+....+.++..|+++++.+. ++..++
T Consensus       162 GtTG~PK~v~~s~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  236 (509)
T PRK12406        162 GTTGHPKGVRRAAPTPEQAAAAEQMRALIY-----GLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELL  236 (509)
T ss_pred             CCCCCCceEEEechhHHHHHHHHHhhhhhc-----CCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHH
Confidence            9999999999876654333   33333333     67889999999999998887777777888999888776 899999


Q ss_pred             HHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCce
Q 005867          306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL  385 (673)
Q Consensus       306 ~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  385 (673)
                      +.++++++|.+.++|+++..+.........                                   .        ..++++
T Consensus       237 ~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~-----------------------------------~--------~~~~~l  273 (509)
T PRK12406        237 QLIERHRITHMHMVPTMFIRLLKLPEEVRA-----------------------------------K--------YDVSSL  273 (509)
T ss_pred             HHHHHcCCeEEEccHHHHHHHHhCchhhcc-----------------------------------c--------CCCCce
Confidence            999999999999999999887642111000                                   0        012489


Q ss_pred             eEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCC
Q 005867          386 RLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC  465 (673)
Q Consensus       386 r~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~  465 (673)
                      |.+++||+++++++.+.+.+.++..+++.||+||++.+++....+....++++|.|++++++++++ +++.  +++.|+.
T Consensus       274 ~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~--~~~~g~~  350 (509)
T PRK12406        274 RHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGR--PLPQGEI  350 (509)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEEC-CCCC--CCCCCCc
Confidence            999999999999999999998999999999999999876655443334457899999999999999 5543  4556789


Q ss_pred             ceEEEecCCccc-cccCCchhhhhhccCCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcce
Q 005867          466 GEVCVRGKTLFS-GYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED  544 (673)
Q Consensus       466 GEl~v~gp~~~~-gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~  544 (673)
                      |||+++|+.++. +|+++++.+...+.+|||+|||+|+++++|.+++.||.+|+|++ +|.+|+|.+||++|.++|+|.+
T Consensus       351 Gel~v~~~~~~~~~y~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~~~v~~  429 (509)
T PRK12406        351 GEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDADGYLFLCDRKRDMVIS-GGVNIYPAEIEAVLHAVPGVHD  429 (509)
T ss_pred             eEEEEECCccccccccCCchhcccccCCCCeEEccEEEEcCCceEEEeecccceEEE-CCEEECHHHHHHHHHhCCCeeE
Confidence            999999998875 89999998888788999999999999999999999999999996 8999999999999999999999


Q ss_pred             EEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCcc
Q 005867          545 IWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRG  621 (673)
Q Consensus       545 ~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~  621 (673)
                      |+|++.++.   +.++++|++.+...                ....++.+.+++.                      |++
T Consensus       430 ~~v~~~~~~~~~~~~~~~v~~~~~~~----------------~~~~~l~~~l~~~----------------------l~~  471 (509)
T PRK12406        430 CAVFGIPDAEFGEALMAVVEPQPGAT----------------LDEADIRAQLKAR----------------------LAG  471 (509)
T ss_pred             EEEEeeeccccCceeEEEEEECCCCC----------------CCHHHHHHHHHHh----------------------ccc
Confidence            999987654   36788888765320                0223344444433                      999


Q ss_pred             ceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 005867          622 FEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  659 (673)
Q Consensus       622 ~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~  659 (673)
                      |++|..+.+++      .+|+|++||++|++|++.|.+
T Consensus       472 ~~~P~~i~~~~------~iP~t~~GK~~r~~L~~~~~~  503 (509)
T PRK12406        472 YKVPKHIEIMA------ELPREDSGKIFKRRLRDPYWA  503 (509)
T ss_pred             CCCCcEEEEec------cCCCCCccchhHHHHHHHHHh
Confidence            99999998873      336999999999999887754

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=6e-55  Score=475.00  Aligned_cols=433  Identities=25%  Similarity=0.320  Sum_probs=354.8

Q ss_pred             eHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcch
Q 005867           78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK  157 (673)
Q Consensus        78 Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~  157 (673)
                      ||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+++..+.+.+..+++..+++++++++.
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL   80 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999875


Q ss_pred             hhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcce
Q 005867          158 KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKG  237 (673)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~  237 (673)
                      .....             +.                   ...+..+................+++++++|||||||.||+
T Consensus        81 ~~~~~-------------~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~  128 (436)
T TIGR01923        81 LEEKD-------------FQ-------------------ADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKA  128 (436)
T ss_pred             ccccc-------------ee-------------------ecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcE
Confidence            32100             00                   00111111111111111223467889999999999999999


Q ss_pred             eeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEecCCHHHHHHHhhhccCeEEE
Q 005867          238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA  317 (673)
Q Consensus       238 v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~l~  317 (673)
                      |.++|+++...+......+     ++.++|++++.+|++|..++...+.++..|+++++.+. ...+++.++++++|++.
T Consensus       129 v~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~-~~~~~~~l~~~~~t~~~  202 (436)
T TIGR01923       129 VPHTFRNHYASAVGSKENL-----GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDK-FNQLLEMIANERVTHIS  202 (436)
T ss_pred             EEEehHHHHHHHHHHHhhc-----CCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecch-HHHHHHHHHHhCCeEEE
Confidence            9999999999988877766     78899999999999999998877888999999988864 34999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCH
Q 005867          318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST  397 (673)
Q Consensus       318 ~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~  397 (673)
                      ++|+++..+.+....                                                 .+++|.++++|+++++
T Consensus       203 ~~P~~l~~l~~~~~~-------------------------------------------------~~~l~~~~~~G~~~~~  233 (436)
T TIGR01923       203 LVPTQLNRLLDEGGH-------------------------------------------------NENLRKILLGGSAIPA  233 (436)
T ss_pred             eHHHHHHHHHhCcCC-------------------------------------------------CCceEEEEECCCCCCH
Confidence            999999887542110                                                 0389999999999999


Q ss_pred             HHHHHHHHhcCCceeeecCCCCCCCcccccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccc
Q 005867          398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS  477 (673)
Q Consensus       398 ~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~  477 (673)
                      ++.+++++ +|+++++.||+||++..+............++|.|++++++++.. ++..       +.|||+++|+.++.
T Consensus       234 ~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~-------~~Gel~v~~~~~~~  304 (436)
T TIGR01923       234 PLIEEAQQ-YGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKV-DNKE-------GHGEIMVKGANLMK  304 (436)
T ss_pred             HHHHHHHH-hCCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEe-CCCC-------CceEEEEECCccch
Confidence            99998876 599999999999998866554433322223589999999999854 2221       57999999999999


Q ss_pred             cccCCchhhhhhccCCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---C
Q 005867          478 GYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---S  554 (673)
Q Consensus       478 gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~  554 (673)
                      ||+++++.+...+.+|||+|||+|+++.||.+++.||.+|+|++ +|.+|++.+||++|.++|.|.+++|++.+++   .
T Consensus       305 gy~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~  383 (436)
T TIGR01923       305 GYLYQGELTPAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIIS-GGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQ  383 (436)
T ss_pred             hhCCChhhhhhhhcCCCeeccceEEEcCCCCEEEeccccCeEEe-CCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCC
Confidence            99998888877778899999999999999999999999999997 8999999999999999999999999987654   3


Q ss_pred             eEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCC
Q 005867          555 MLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRP  634 (673)
Q Consensus       555 ~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p  634 (673)
                      .+++++++.++.                  +..++.+++.+.                      |+.|++|..+.+++  
T Consensus       384 ~~~~~v~~~~~~------------------~~~~l~~~l~~~----------------------l~~~~~p~~i~~~~--  421 (436)
T TIGR01923       384 VPVAYIVSESDI------------------SQAKLIAYLTEK----------------------LAKYKVPIAFEKLD--  421 (436)
T ss_pred             eeEEEEEECCCC------------------CHHHHHHHHHHh----------------------hhCCCCCeEEEEec--
Confidence            678888877532                  333444444433                      99999999999883  


Q ss_pred             CCCCCCccccccccchHHH
Q 005867          635 FDMERDLVTATLKKKRNKL  653 (673)
Q Consensus       635 ~~~~~~p~t~~GKv~R~~l  653 (673)
                          .+|+|++||++|++|
T Consensus       422 ----~iP~t~~GK~~r~~L  436 (436)
T TIGR01923       422 ----ELPYNASGKILRNQL  436 (436)
T ss_pred             ----CCCCCCCCceecccC
Confidence                346999999999865

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.3e-55  Score=514.10  Aligned_cols=492  Identities=14%  Similarity=0.112  Sum_probs=360.7

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHH
Q 005867           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (673)
Q Consensus        39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~  118 (673)
                      ....++.++|+++++++||++|+++.    +     +.+||+||.++++++|++|.+.|+++||+|+|+++|++++++++
T Consensus       444 ~~~~sl~~ll~~~a~~~pd~~Al~~~----~-----~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~  514 (994)
T PRK07868        444 HTRISLGRIIAEQARDAPKGEFLLFD----G-----RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAI  514 (994)
T ss_pred             CCCccHHHHHHHHHHHCCCCeEEEeC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            45578999999999999999999874    3     47999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCcee
Q 005867          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (673)
Q Consensus       119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  198 (673)
                      +||+++|++++|++|.   +++.++++.++++++|++......+...       ...++.++........  ........
T Consensus       515 lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~-------~~~iiv~~~~~~~~~~--~~~~~~~~  582 (994)
T PRK07868        515 AALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL-------PGRVLVLGGGESRDLD--LPDDADVI  582 (994)
T ss_pred             HHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc-------CceEEEecCCcccccc--CCcchhhh
Confidence            9999999999999985   6789999999999999987766544221       1233333321100000  00000011


Q ss_pred             cHHHHHhcCccCC--ccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchH
Q 005867          199 SWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (673)
Q Consensus       199 ~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~  276 (673)
                      .++++.......+  ....+..++++++|+|| ||||.||++.++|.++..........+     ++..+|++++.+|++
T Consensus       583 ~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~-----~l~~~d~~L~~~Pl~  656 (994)
T PRK07868        583 DMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAA-----ALDRRDTVYCLTPLH  656 (994)
T ss_pred             hhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhc-----CCCCCCeEEEecChH
Confidence            1111111000000  01112246899999999 578888888788877655544433333     678899999999999


Q ss_pred             hHHHHHHhHHH-hhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 005867          277 HILDRVIEEYF-FRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (673)
Q Consensus       277 ~~~gl~~~~~~-l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (673)
                      |.+++...+.+ +..|+++++.+. ++..+++.|+++++|+++++|+++..|.+.....                     
T Consensus       657 h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~---------------------  715 (994)
T PRK07868        657 HESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFV---------------------  715 (994)
T ss_pred             HHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCc---------------------
Confidence            99998876555 455555555554 9999999999999999999999998876421000                     


Q ss_pred             HhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcC-CceeeecCCCCCCCcccccCCCCcc
Q 005867          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMC  433 (673)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g-~~v~~~YG~tE~~~~~~~~~~~~~~  433 (673)
                                              ....++||.++  |+.+++++.+.+.+.++ +++++.||+||++...... .  ..
T Consensus       716 ------------------------~~~~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~~-~--~~  766 (994)
T PRK07868        716 ------------------------LHGNHPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLANV-S--GA  766 (994)
T ss_pred             ------------------------cCCCCceEEEe--cCCCCHHHHHHHHHHhCchheeeeeeccccccccccc-C--CC
Confidence                                    00114789876  33499999999999886 8999999999987654322 1  12


Q ss_pred             ccCCcCCCccce-eEEEeec----------CCCCCCCCCCCCCceEEEecCCccccccCCchhhh--hhc--cCCccccC
Q 005867          434 MVGTAGPVSVYS-ELRLEEV----------PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR--ESI--IDGWFHTG  498 (673)
Q Consensus       434 ~~~~~G~~~~~~-~v~i~~~----------~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~--~~~--~~g~~~TG  498 (673)
                      ..+++|+|++++ +++|...          +++....++.|+.|||+++++..    + +++.+.  ..|  .+|||+||
T Consensus       767 ~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~~TG  841 (994)
T PRK07868        767 KIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGP----I-DPTASVKRGVFAPADTWISTE  841 (994)
T ss_pred             CCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCC----C-ChhhhhHhcccccCCEEEecc
Confidence            347999999998 6776521          12211335567899999999864    3 343332  234  27899999


Q ss_pred             ceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC--CeEEEEEecChhHHHHHHHHcCC
Q 005867          499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGH  576 (673)
Q Consensus       499 Dlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~  576 (673)
                      |+|++|+||+|+|+||.||+||+ +|.+|+|.+||++|.+||+|.+|+|++.+++  +.++|+|+++++..         
T Consensus       842 Dlg~~d~dG~l~~~GR~dd~Ik~-~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~~~---------  911 (994)
T PRK07868        842 YLFRRDDDGDYWLVDRRGSVIRT-ARGPVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLRPGAA---------  911 (994)
T ss_pred             ceEEEcCCCCEEEeccCCCEEEe-CCceEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeCCCCc---------
Confidence            99999999999999999999997 7889999999999999999999999997754  37899999876421         


Q ss_pred             CCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 005867          577 AGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  656 (673)
Q Consensus       577 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~  656 (673)
                             .+..+        |++++++               ||.|++|+.|++++      .+|+|++||++|.+|++.
T Consensus       912 -------~~~~~--------L~~~l~~---------------l~~y~vP~~i~~v~------~lP~T~sGKi~r~~L~~~  955 (994)
T PRK07868        912 -------ITAAD--------LTEALAS---------------LPVGLGPDIVHVVP------EIPLSATYRPTVSALRAA  955 (994)
T ss_pred             -------CCHHH--------HHHHHHh---------------CCCCcCCeEEEEeC------CCCCCccccEehHHHHhc
Confidence                   02233        3333332               99999999999983      336999999999999876


Q ss_pred             HH
Q 005867          657 YQ  658 (673)
Q Consensus       657 ~~  658 (673)
                      -.
T Consensus       956 ~l  957 (994)
T PRK07868        956 GI  957 (994)
T ss_pred             CC
Confidence            43

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.9e-54  Score=482.87  Aligned_cols=494  Identities=17%  Similarity=0.178  Sum_probs=370.7

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      |.++.+.|..+|..+|+.+++...   ++.    +.+||.||++++.++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la   73 (545)
T PRK07768          1 MSRFTEKMYANARTSPRGMVTGEP---DAP----VRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQG   73 (545)
T ss_pred             CchHHHHHHHHhhCCCcceEEecC---CCc----eEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHH
Confidence            467899999999999999988755   432    6899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhH-------HHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhC
Q 005867          121 CNALSLICVPLYDTLGPGAV-------NFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT  193 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  193 (673)
                      |+++|++++++++..+.+++       ..+++.++++.+++++........ ...                        .
T Consensus        74 ~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~------------------------~  128 (545)
T PRK07768         74 LWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPV-LEE------------------------K  128 (545)
T ss_pred             HHHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhh-hcc------------------------c
Confidence            99999999999988776544       456777899999998765432211 000                        0


Q ss_pred             CCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCC-cEEEEe
Q 005867          194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVD-DVYLSF  272 (673)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~-d~~l~~  272 (673)
                      .....+++++.....   .......++++++++|||||||.||+|.++|+++...+......+     ++..+ |++++.
T Consensus       129 ~~~~~~~~~l~~~~~---~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~d~~~~~  200 (545)
T PRK07768        129 GIRVLTVADLLAADP---IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAA-----EFDVETDVMVSW  200 (545)
T ss_pred             CCceeehhhhcccCC---CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhc-----CCCCCCceeEEe
Confidence            112334555544321   122345679999999999999999999999999999887766655     56665 899999


Q ss_pred             cchHhHHHHHH-hHHHhhcCcEEEEecC-----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHH
Q 005867          273 LPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (673)
Q Consensus       273 ~p~~~~~gl~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (673)
                      +|++|..++.. ++.++..|++++++..     ++..+...+.+++++++.++|..+..+...+......          
T Consensus       201 ~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------  270 (545)
T PRK07768        201 LPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKP----------  270 (545)
T ss_pred             CCCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccc----------
Confidence            99999999875 4456899999888764     6778899999999999988888777665432111000          


Q ss_pred             HHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHh---cCC---ceeeecCCCCC
Q 005867          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT---CCA---FLVQGYGLTET  420 (673)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~---~g~---~v~~~YG~tE~  420 (673)
                                             ...        .++++|.++++|+++++.+.+++.+.   +|.   .+++.||+||+
T Consensus       271 -----------------------~~~--------~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~  319 (545)
T PRK07768        271 -----------------------GAF--------DLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEA  319 (545)
T ss_pred             -----------------------cCC--------CchheeeEEeccCCCCHHHHHHHHHHHHhcCCCccccccccccccc
Confidence                                   001        11489999999999999999998774   555   49999999999


Q ss_pred             CCcccccCCCC-------------------------ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCc
Q 005867          421 CGPTTVCFPDE-------------------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL  475 (673)
Q Consensus       421 ~~~~~~~~~~~-------------------------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~  475 (673)
                      +..+.....+.                         ....+++|.|++++++++++ +++.  +++.++.|||+++|+.+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~--~~~~g~~Gel~v~~~~~  396 (545)
T PRK07768        320 TLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQ--VLPPRGVGVIELRGESV  396 (545)
T ss_pred             ceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCC--CCCCCCEEEEEEccCcc
Confidence            87654332211                         11236899999999999999 6654  44566899999999999


Q ss_pred             cccccCCchhhhhhccCCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecC--CC
Q 005867          476 FSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDS--LK  553 (673)
Q Consensus       476 ~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~--~~  553 (673)
                      +.||++++......+.+|||+|||+|+++++|.++++||.+|+|++ +|.+|+|.+||+.|.+||+|.+++|++..  +.
T Consensus       397 ~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~  475 (545)
T PRK07768        397 TPGYLTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIM-AGRNIYPTDIERAAARVEGVRPGNAVAVRLDAG  475 (545)
T ss_pred             cccccCCCCCcccccCCCeeeccceEEEecCCEEEEEccccceEEE-CCEecCHHHHHHHHHhCcccccceEEEEEecCC
Confidence            9999987655554456889999999999999999999999999997 79999999999999999999998777532  22


Q ss_pred             ---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEE
Q 005867          554 ---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVIL  630 (673)
Q Consensus       554 ---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~  630 (673)
                         +.+++++........               ....++.+.+++.+...                    ...+|..+.+
T Consensus       476 ~~~~~~~~~v~~~~~~~~---------------~~~~~l~~~~~~~l~~~--------------------~~~~p~~v~~  520 (545)
T PRK07768        476 HSREGFAVAVESNAFEDP---------------AEVRRIRHQVAHEVVAE--------------------VGVRPRNVVV  520 (545)
T ss_pred             CCceEEEEEEEecccccH---------------HHHHHHHHHHHHHHHHH--------------------hCCCccEEEE
Confidence               234444443322100               00112223333321111                    1146777877


Q ss_pred             ecCCCCCCCCccccccccchHHHHHHHH
Q 005867          631 DPRPFDMERDLVTATLKKKRNKLLIYYQ  658 (673)
Q Consensus       631 ~~~p~~~~~~p~t~~GKv~R~~l~~~~~  658 (673)
                      ++    .+.+|+|++||++|+.|+++|.
T Consensus       521 v~----~~~lP~t~~GKi~r~~l~~~~~  544 (545)
T PRK07768        521 LG----PGSIPKTPSGKLRRANAAELVT  544 (545)
T ss_pred             eC----CCcCCCCCchhHHHHHHHHhcC
Confidence            74    1345799999999999999875

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.5e-52  Score=447.91  Aligned_cols=396  Identities=16%  Similarity=0.122  Sum_probs=330.6

Q ss_pred             eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEE
Q 005867           75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV  154 (673)
Q Consensus        75 ~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~  154 (673)
                      +++||.||.++++++|+.|. .|+++|++|+++++|+++++++++|++++|++++|+++..+.+.+..+++.++++++++
T Consensus         7 ~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~   85 (414)
T PRK08308          7 EEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLY   85 (414)
T ss_pred             ceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEe
Confidence            58999999999999999985 68999999999999999999999999999999999999999999999999999999998


Q ss_pred             cchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCC
Q 005867          155 QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGD  234 (673)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~  234 (673)
                      ++....                  ..                                ......++++++++|||||||.
T Consensus        86 ~~~~~~------------------~~--------------------------------~~~~~~~~~~~~i~~TSGtTG~  115 (414)
T PRK08308         86 GESDFT------------------KL--------------------------------EAVNYLAEEPSLLQYSSGTTGE  115 (414)
T ss_pred             cCcccc------------------cc--------------------------------cCCCCCCCCceEEEECCCCCCC
Confidence            763100                  00                                0012356789999999999999


Q ss_pred             cceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHH-hHHHhhcCcEEEEecC-CHHHHHHHhhhcc
Q 005867          235 PKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELK  312 (673)
Q Consensus       235 pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~  312 (673)
                      ||+|.++|+++.+.+..+...+     ....+++++..+|++|.+|+.. ++.++..|+++++.+. ++..+++.+++++
T Consensus       116 PKgv~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~  190 (414)
T PRK08308        116 PKLIRRSWTEIDREIEAYNEAL-----NCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTP  190 (414)
T ss_pred             CcEEEEehHhHHHHHHHHHHhh-----CCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhC
Confidence            9999999999999888776666     6778899999999999999864 6678999999988876 9999999999999


Q ss_pred             CeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcC
Q 005867          313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG  392 (673)
Q Consensus       313 ~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G  392 (673)
                      +|.++++|+++..+.+....                                                 ..+++.++++|
T Consensus       191 ~t~~~~~P~~~~~l~~~~~~-------------------------------------------------~~~l~~~~~~G  221 (414)
T PRK08308        191 QHILYAVPLMLHILGRLLPG-------------------------------------------------TFQFHAVMTSG  221 (414)
T ss_pred             CeEEEcCHHHHHHHHhcCCc-------------------------------------------------cccccEEEEcc
Confidence            99999999999887542110                                                 02678899999


Q ss_pred             CCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEec
Q 005867          393 APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG  472 (673)
Q Consensus       393 ~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~g  472 (673)
                      +++++++.+.|++. +.++++.||+||++.+.....   ....+++|+|++++++++.+ +        .++.|||++++
T Consensus       222 ~~l~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~---~~~~~~~G~p~~~~~~~~~~-~--------~~~~gel~v~~  288 (414)
T PRK08308        222 TPLPEAWFYKLRER-TTYMMQQYGCSEAGCVSICPD---MKSHLDLGNPLPHVSVSAGS-D--------ENAPEEIVVKM  288 (414)
T ss_pred             CCCCHHHHHHHHHh-CChhhhccCccccCCeeecCC---CCCCCccCccCCCeEEEEec-C--------CCCCceEEEEc
Confidence            99999999999886 678999999999986543221   12337899999999999875 2        23469999975


Q ss_pred             CCccccccCCchhhhhhccCCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCC
Q 005867          473 KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL  552 (673)
Q Consensus       473 p~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~  552 (673)
                      .                  ++||+|||+|++++||+++++||.+|+|++ +|++|+|.+||+++.++|+|.+|+|++.++
T Consensus       289 ~------------------~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~  349 (414)
T PRK08308        289 G------------------DKEIFTKDLGYKSERGTLHFMGRMDDVINV-SGLNVYPIEVEDVMLRLPGVQEAVVYRGKD  349 (414)
T ss_pred             C------------------CceEECCceEEECCCccEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccC
Confidence            2                  579999999999999999999999999997 799999999999999999999999998765


Q ss_pred             C---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEE
Q 005867          553 K---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVI  629 (673)
Q Consensus       553 ~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~  629 (673)
                      +   +.++++++.....                  +..++++++++.                      ||.|++|..++
T Consensus       350 ~~~~~~~~~~v~~~~~~------------------~~~~l~~~l~~~----------------------l~~~~~P~~i~  389 (414)
T PRK08308        350 PVAGERVKAKVISHEEI------------------DPVQLREWCIQH----------------------LAPYQVPHEIE  389 (414)
T ss_pred             CCCCceEEEEEEeCCCC------------------CHHHHHHHHHHh----------------------CccccCCcEEE
Confidence            4   3677887765422                  334444444443                      99999999999


Q ss_pred             EecCCCCCCCCccccccccchHHH
Q 005867          630 LDPRPFDMERDLVTATLKKKRNKL  653 (673)
Q Consensus       630 ~~~~p~~~~~~p~t~~GKv~R~~l  653 (673)
                      +++      .+|+|++||++|+.|
T Consensus       390 ~v~------~iP~t~~GKi~r~~~  407 (414)
T PRK08308        390 SVT------EIPKNANGKVSRKLL  407 (414)
T ss_pred             Eec------cCCCCCCcCeehhhh
Confidence            883      336999999999954

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=1.1e-52  Score=454.59  Aligned_cols=403  Identities=31%  Similarity=0.472  Sum_probs=313.2

Q ss_pred             HHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHHHhcCCe
Q 005867           48 FSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI  127 (673)
Q Consensus        48 l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~~~~G~~  127 (673)
                      |+++|+++||++|+++.   ++     +++||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus         1 f~~~a~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~   72 (417)
T PF00501_consen    1 FERQAQRYPDRIALIDD---EG-----RSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAI   72 (417)
T ss_dssp             HHHHHHHSTTSEEEEET---TT-----EEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-E
T ss_pred             ChhHHhhCCCceEEEEC---CC-----EEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccc
Confidence            68899999999999971   22     79999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCChhhHHHHHhccCceEEEE----cchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecHHHH
Q 005867          128 CVPLYDTLGPGAVNFILDHAEIDFVFV----QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEF  203 (673)
Q Consensus       128 ~vpl~~~~~~~~l~~~l~~~~~~~vi~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (673)
                      ++|+++.++.+++.++++.++++++|+    +......+..... .......++.++.....             ....+
T Consensus        73 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------------~~~~~  138 (417)
T PF00501_consen   73 PVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFK-QEDPSSSIIILDRDDLP-------------KKEAL  138 (417)
T ss_dssp             EEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHT-TSTTTEEEEEESHSSCT-------------TCHHH
T ss_pred             ccccccccccccccccccccceeEEEEeccccccccccchhhhc-ccccccccccccccccc-------------ccccc
Confidence            999999999999999999999999997    2222221211111 11223444454422110             00011


Q ss_pred             HhcCccCCccCCC-CCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHH-
Q 005867          204 LHLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR-  281 (673)
Q Consensus       204 ~~~~~~~~~~~~~-~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl-  281 (673)
                      .......... .+ ..++++++++|||||||.||+|.++|+++++.+..+.  +... .+++  |++++.+|++|.+|+ 
T Consensus       139 ~~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~--~~~~-~~~~--d~~l~~~p~~~~~g~~  212 (417)
T PF00501_consen  139 KSASLSDEPQ-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALA--LPEY-FGLG--DRILSFLPLSHIFGLI  212 (417)
T ss_dssp             HHHHHCHCSH-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHH--HHHT-TTTT--TEEEESS-TTSHHHHH
T ss_pred             cccccccccc-cCCCCccceeEeeccccccccccccccccccccccccccc--cccc-cccC--ceEEeecccccccccc
Confidence            1000000000 00 0578999999999999999999999999999988865  1110 1233  699999999999999 


Q ss_pred             HHhHHHhhcCcEEEEecC-C---HHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhh
Q 005867          282 VIEEYFFRRGASVGYYHG-D---LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (673)
Q Consensus       282 ~~~~~~l~~G~~~v~~~~-~---~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (673)
                      ...+.++..|+++++++. .   +..+++.++++++|+++++|+++..+++..... ...                    
T Consensus       213 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~~~--------------------  271 (417)
T PF00501_consen  213 SALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEK-TKI--------------------  271 (417)
T ss_dssp             HHHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-HHG--------------------
T ss_pred             ccccccccccccccccccccccccccchhccccccccccccccccccccccccccc-ccc--------------------
Confidence            678889999999999987 2   467899999999999999999999986621111 000                    


Q ss_pred             hcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCC-ceeeecCCCCCCCcccccC-CCCcccc
Q 005867          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCF-PDEMCMV  435 (673)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~-~v~~~YG~tE~~~~~~~~~-~~~~~~~  435 (673)
                                  ..        ..+++||.++++|+++++++.+.+++.++. ++++.||+||++.+++... .......
T Consensus       272 ------------~~--------~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~  331 (417)
T PF00501_consen  272 ------------SK--------KDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKP  331 (417)
T ss_dssp             ------------TT--------TTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSST
T ss_pred             ------------cc--------cccccccccccccccCChhhccccccccccccceecccccccceeeeccccccccccc
Confidence                        00        011479999999999999999999999987 9999999999999987653 2233344


Q ss_pred             CCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccC-CccccCceEEECCCCcEEEeec
Q 005867          436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDR  514 (673)
Q Consensus       436 ~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~-g~~~TGDlg~~~~~G~l~~~GR  514 (673)
                      +++|.|+++++++|+| ++++ .+++.|+.|||+|+||.++.||+++++.+.+.|.+ |||+|||+|++|+||+++++||
T Consensus       332 ~~~G~~~~~~~~~ivd-~~~~-~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~GR  409 (417)
T PF00501_consen  332 GSVGKPLPGVEVKIVD-PNTG-EPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILGR  409 (417)
T ss_dssp             TSEBEESTTEEEEEEC-TTTS-SBESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEEE
T ss_pred             cccccccccccccccc-cccc-ccccccccccccccCCccceeeeccccccccccccccceecceEEEECCCCeEEEEEe
Confidence            7899999999999999 5422 34466789999999999999999999999999965 8999999999999999999999


Q ss_pred             CCCeEEc
Q 005867          515 KKNLIKI  521 (673)
Q Consensus       515 ~~d~i~~  521 (673)
                      .||+||+
T Consensus       410 ~~~~i~~  416 (417)
T PF00501_consen  410 SDDMIKV  416 (417)
T ss_dssp             GSCEEEE
T ss_pred             eCCEEEe
Confidence            9999996

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=2.1e-49  Score=402.83  Aligned_cols=502  Identities=19%  Similarity=0.166  Sum_probs=380.4

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHH
Q 005867           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (673)
Q Consensus        39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~  118 (673)
                      -...|+.++|..+++++|+++|+++.   +..    +++||+|+.+++.++|++|+..|++.||.|+++|+|.+|+++++
T Consensus        74 r~~~ti~~~F~~~vrr~p~k~aii~~---~~~----~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lW  146 (649)
T KOG1179|consen   74 RERRTIAELFLSQVRRQPDKPAIIYE---GPF----QSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALW  146 (649)
T ss_pred             ccCCcHHHHHHHHHHhCCCccEEEEe---CCC----ceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHH
Confidence            34589999999999999999999987   432    58999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCcee
Q 005867          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (673)
Q Consensus       119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  198 (673)
                      |+++++|++...||+++..+.|.|-|+.++++.+|++.+..+.+.+.........-.++..+....         .....
T Consensus       147 lGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~---------~~g~~  217 (649)
T KOG1179|consen  147 LGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSV---------PDGIE  217 (649)
T ss_pred             HhHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCC---------CchHH
Confidence            999999999999999999999999999999999999999887776652222212122233221111         11122


Q ss_pred             cHHHHHhcCccCC---ccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecch
Q 005867          199 SWDEFLHLGKVNE---MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (673)
Q Consensus       199 ~~~~~~~~~~~~~---~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~  275 (673)
                      ++...++.....+   .........++++++|||||||.||+.+++|.-...........+     +++++|++...+|+
T Consensus       218 ~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~-----g~~~~DvvY~~lPL  292 (649)
T KOG1179|consen  218 SLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVF-----GMTADDVVYTTLPL  292 (649)
T ss_pred             HHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-----CCCccceEEEcchh
Confidence            3333333333333   223345778899999999999999999999999888887666667     89999999999999


Q ss_pred             HhHHHHHH-hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 005867          276 AHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (673)
Q Consensus       276 ~~~~gl~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (673)
                      +|..|.+. +..++..|+|+++-.. ++..|++...++++|+..-.-.+.+-|+......-++.                
T Consensus       293 YHsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~----------------  356 (649)
T KOG1179|consen  293 YHSAAGILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQ----------------  356 (649)
T ss_pred             HHHHHHHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcC----------------
Confidence            99999876 5668999999999887 99999999999999999988888887766433222221                


Q ss_pred             HHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCc-eeeecCCCCCCCcccccCCCCc
Q 005867          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGPTTVCFPDEM  432 (673)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~-v~~~YG~tE~~~~~~~~~~~~~  432 (673)
                                                   -.+|..+  |..+.+++.+.|.++||.+ |.+.||+||+....... ++. 
T Consensus       357 -----------------------------HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~-d~~-  403 (649)
T KOG1179|consen  357 -----------------------------HKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNY-DGR-  403 (649)
T ss_pred             -----------------------------ceEEEEe--cCCCCchHHHHHHHHcCCCeEEEEeccccCcceeeee-cCc-
Confidence                                         1677766  5668999999999999865 99999999987654332 221 


Q ss_pred             cccCCcCC------CccceeEEEeecC--------CCCCCCCCCCCCceEEEe--cCCc---cccccCCchhhhhh----
Q 005867          433 CMVGTAGP------VSVYSELRLEEVP--------EMGYSPLDDPPCGEVCVR--GKTL---FSGYYKNPDLTRES----  489 (673)
Q Consensus       433 ~~~~~~G~------~~~~~~v~i~~~~--------~~~~~~~~~g~~GEl~v~--gp~~---~~gy~~~~~~~~~~----  489 (673)
                        .|.+|.      -+--.++.=+|..        ++-=.+++.||.|.+.-+  ....   |.||.++.+.+.+.    
T Consensus       404 --vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rD  481 (649)
T KOG1179|consen  404 --VGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRD  481 (649)
T ss_pred             --cccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHh
Confidence              122222      1111222223311        111134667788865422  2233   89999866666543    


Q ss_pred             -ccCC--ccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC----CeEEEEEec
Q 005867          490 -IIDG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK----SMLVAVVVP  562 (673)
Q Consensus       490 -~~~g--~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~----~~~~a~v~~  562 (673)
                       |..|  ||.|||+-.+|+.|+|||..|..|.++. +|++|+..|+|.+|....+++|+.|+|+.-+    ..-+|.|++
T Consensus       482 VFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRW-KGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~  560 (649)
T KOG1179|consen  482 VFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRW-KGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVL  560 (649)
T ss_pred             hhccCcEEEeeCcEEEEecCCcEEEeccCCCceee-cCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEe
Confidence             4334  9999999999999999999999999998 7999999999999999999999999995533    256777776


Q ss_pred             ChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCcc
Q 005867          563 CEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLV  642 (673)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~  642 (673)
                      .++.+.                +-.++.+.+.+.                      ||+|.+|..+.+.++.      ++
T Consensus       561 ~p~~~~----------------d~~~l~~~l~~~----------------------LP~YA~P~FlRl~~~i------~~  596 (649)
T KOG1179|consen  561 DPTTEK----------------DLEKLYQHLREN----------------------LPSYARPRFLRLQDEI------EK  596 (649)
T ss_pred             cCcccc----------------hHHHHHHHHHhh----------------------CccccchHHHHHHhhh------hc
Confidence            665321                222333333332                      9999999988888433      59


Q ss_pred             ccccccchHHHHHHH
Q 005867          643 TATLKKKRNKLLIYY  657 (673)
Q Consensus       643 t~~GKv~R~~l~~~~  657 (673)
                      |.+=|.++.+|.+.-
T Consensus       597 TgTFKl~K~~L~~eg  611 (649)
T KOG1179|consen  597 TGTFKLQKTELQKEG  611 (649)
T ss_pred             ccchhhHHHHHHHcc
Confidence            999999999998754

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=2.4e-49  Score=427.01  Aligned_cols=389  Identities=25%  Similarity=0.320  Sum_probs=324.6

Q ss_pred             eHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcc
Q 005867           78 TYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD  156 (673)
Q Consensus        78 Ty~el~~~v~~lA~~L~~-~gv~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~  156 (673)
                      ||.||.+.+.++|..|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+.+.++++.+++++++++.
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            799999999999999998 7999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcc
Q 005867          157 KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPK  236 (673)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK  236 (673)
                      .....+.....       .+......                 +...................+++++++|||||||.||
T Consensus        81 ~~~~~~~~~~~-------~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK  136 (408)
T TIGR01733        81 ALASRLAGLVL-------PIILVDPL-----------------ELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPK  136 (408)
T ss_pred             chhhhccccCC-------ceEEechh-----------------hhhhcccccccccccCCCCCCCcEEEEEcCCCCCCCC
Confidence            76655432211       11111110                 0000000000111111145789999999999999999


Q ss_pred             eeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEecC----CHHHHHHHhhhcc
Q 005867          237 GVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELK  312 (673)
Q Consensus       237 ~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~  312 (673)
                      +|.++|++++..+......+     .+..++++++..|++|.+++...+.++..|+++++++.    .+..+...+++++
T Consensus       137 ~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~  211 (408)
T TIGR01733       137 GVVVTHRSLVNLLAWLARRY-----GLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHP  211 (408)
T ss_pred             EEEeccHHHHHHHHHHHHhc-----CCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcC
Confidence            99999999999998887766     77889999999999999998888999999999998876    2688999999999


Q ss_pred             CeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcC
Q 005867          313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG  392 (673)
Q Consensus       313 ~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G  392 (673)
                      +|.++++|.+++.+.+...                                                ..+++||.+++||
T Consensus       212 ~t~l~~~p~~~~~l~~~~~------------------------------------------------~~~~~l~~v~~~g  243 (408)
T TIGR01733       212 VTVLNLTPSLLALLAAALP------------------------------------------------PALASLRLVILGG  243 (408)
T ss_pred             ceEEEeCHHHHHHHHHhhh------------------------------------------------hcccCceEEEEeC
Confidence            9999999999999876422                                                0114899999999


Q ss_pred             CCCCHHHHHHHHHhcC-CceeeecCCCCCCCcccccCCCCc--c--ccCCcCCCccceeEEEeecCCCCCCCCCCCCCce
Q 005867          393 APLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEM--C--MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGE  467 (673)
Q Consensus       393 ~~l~~~~~~~~~~~~g-~~v~~~YG~tE~~~~~~~~~~~~~--~--~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GE  467 (673)
                      +++++++.+.|.+.++ +.+++.||+||+++++........  .  ...++|.|+++++++|++ +++  .+++.|+.||
T Consensus       244 ~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~--~~~~~g~~Ge  320 (408)
T TIGR01733       244 EALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLD-DDL--RPVPVGVVGE  320 (408)
T ss_pred             ccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEEC-CCC--CCCCCCCceE
Confidence            9999999999999997 899999999999987753322211  1  157899999999999999 553  4455678999


Q ss_pred             EEEecCCccccccCCchhhhhhccC-------C--ccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhc
Q 005867          468 VCVRGKTLFSGYYKNPDLTRESIID-------G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV  538 (673)
Q Consensus       468 l~v~gp~~~~gy~~~~~~~~~~~~~-------g--~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~  538 (673)
                      |+++|+.++.||+++++.+...|..       |  ||+|||+|++|++|++++.||.+|+|++ +|++++|.+||++|..
T Consensus       321 l~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~-~G~~v~~~~ie~~l~~  399 (408)
T TIGR01733       321 LYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI-RGYRIELGEIEAALLR  399 (408)
T ss_pred             EEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEe-CeEEechHHHHHHHhc
Confidence            9999999999999999999888732       2  9999999999999999999999999997 8999999999999999


Q ss_pred             CcCcceEEE
Q 005867          539 APIIEDIWV  547 (673)
Q Consensus       539 ~p~V~~~~v  547 (673)
                      ||.|.+|+|
T Consensus       400 ~~~v~~~~v  408 (408)
T TIGR01733       400 HPGVREAVV  408 (408)
T ss_pred             CcchhhhcC
Confidence            999999875

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=5.9e-42  Score=362.44  Aligned_cols=317  Identities=24%  Similarity=0.290  Sum_probs=254.8

Q ss_pred             CCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEE
Q 005867          216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVG  295 (673)
Q Consensus       216 ~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v  295 (673)
                      ...++++++++|||||||.||+|.++|.++...+......+       ...++++..+|++|..++...+.++..|++++
T Consensus        31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-------~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v  103 (358)
T PRK07824         31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL-------GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPV  103 (358)
T ss_pred             CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc-------CCCCeEEEECChHHHHHHHHHHHHHHcCCeEE
Confidence            34578999999999999999999999999998877654432       34568899999999999887888899999988


Q ss_pred             Eec--C--CHHHHHHHhhhcc--CeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhH
Q 005867          296 YYH--G--DLNALRDDLMELK--PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA  369 (673)
Q Consensus       296 ~~~--~--~~~~~~~~i~~~~--~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (673)
                      ++.  .  ++..+.+.+++++  .++...+|..+..+......                                     
T Consensus       104 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~-------------------------------------  146 (358)
T PRK07824        104 ELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA-------------------------------------  146 (358)
T ss_pred             ecCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc-------------------------------------
Confidence            733  2  8899999999998  45666678766654321000                                     


Q ss_pred             HHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCccccCCcCCCccceeEEE
Q 005867          370 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL  449 (673)
Q Consensus       370 ~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i  449 (673)
                               ...++++|.+++||+++++++.+.+.+ +++++++.||+||++..+.           ..|.|++++++++
T Consensus       147 ---------~~~~~~l~~i~~gG~~l~~~~~~~~~~-~~~~v~~~YG~TE~~~~~~-----------~~G~~~~g~~v~i  205 (358)
T PRK07824        147 ---------TAALAELDAVLVGGGPAPAPVLDAAAA-AGINVVRTYGMSETSGGCV-----------YDGVPLDGVRVRV  205 (358)
T ss_pred             ---------cCCcccceEEEECCCCCCHHHHHHHHh-cCCcEEecccCCccCCCcC-----------cCceeCCCCEEEe
Confidence                     001148999999999999999999886 4999999999999876432           3588999999998


Q ss_pred             eecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCceEEECCCCcEEEeecCCCeEEcCCceeec
Q 005867          450 EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA  528 (673)
Q Consensus       450 ~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~  528 (673)
                      .+              |||+++|+.++.||+++++.+  .| .+|||+|||+|++ ++|.+++.||.||+|++ +|++|+
T Consensus       206 ~~--------------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~-~G~~v~  267 (358)
T PRK07824        206 ED--------------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-DDGVLTVLGRADDAIST-GGLTVL  267 (358)
T ss_pred             cC--------------CEEEEecCccccccCCCcccc--cccCCCceecccEEEE-eCCEEEEEeccCCeEEE-CCEEEC
Confidence            44              999999999999999988643  34 5789999999999 89999999999999997 899999


Q ss_pred             hHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcc
Q 005867          529 LEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNK  605 (673)
Q Consensus       529 ~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  605 (673)
                      |.+||++|.+||+|.+|+|++.+++   +.++++++...+..                ....++++++.+.         
T Consensus       268 p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~----------------~~~~~i~~~~~~~---------  322 (358)
T PRK07824        268 PQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPA----------------PTLEALRAHVART---------  322 (358)
T ss_pred             HHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCC----------------cCHHHHHHHHHhh---------
Confidence            9999999999999999999996654   47888887654320                0223344444333         


Q ss_pred             cccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 005867          606 VIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  659 (673)
Q Consensus       606 ~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~  659 (673)
                                   |+.|++|..|++++      .+|+|++||++|++|+++|.+
T Consensus       323 -------------l~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~~~~~  357 (358)
T PRK07824        323 -------------LDRTAAPRELHVVD------ELPRRGIGKVDRRALVRRFAG  357 (358)
T ss_pred             -------------CccccCCCEEEEec------CCCCCCCccccHHHHHHHhhc
Confidence                         99999999999983      346999999999999998864

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=6.2e-37  Score=349.56  Aligned_cols=409  Identities=22%  Similarity=0.225  Sum_probs=332.3

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      ..++.+.|.+.+.++|+++|+++.   +      .++||.|+..+++++|..|.+.|+.++++|+++.+.+.+++++++|
T Consensus       226 ~~~i~~~f~~~a~~~p~~~a~~~~---~------~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~  296 (642)
T COG1020         226 RLTIHLLFEEQAATTPDAVALVRG---G------QQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLA  296 (642)
T ss_pred             cchHHHHHHHHHHhCCCceeEecC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHH
Confidence            378999999999999999998864   2      4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecH
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  200 (673)
                      ++++|+.++|+++.++.+.+..+++.++++.++++..........     +.    +..+...                +
T Consensus       297 ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~----------------~  351 (642)
T COG1020         297 VLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGL-----PG----LALDDAL----------------S  351 (642)
T ss_pred             HHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccccC-----Cc----ccccccc----------------c
Confidence            999999999999999999999999999999999983322111000     00    1111000                0


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHH
Q 005867          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (673)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (673)
                          ......+ ......+++.+|++|||||||.||||..+|+++.+.+.+....+     .+...|+++...++.+...
T Consensus       352 ----~~~~~~~-~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~-----~~~~~d~~l~~~s~~fD~~  421 (642)
T COG1020         352 ----EIPDTDP-IPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARF-----GLDADDRVLALASLSFDAS  421 (642)
T ss_pred             ----cCCccCc-ccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhc-----CCCcccEEeecCCcccchh
Confidence                0000000 01234568999999999999999999999999999777776666     7888999999999988777


Q ss_pred             HHHhHHHhhcCcEEEEecC----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh
Q 005867          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (673)
Q Consensus       281 l~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (673)
                      ....+.++..|+++++...    ++..+...+.++++|++..+|.++..+........ ...                  
T Consensus       422 ~~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~-~~~------------------  482 (642)
T COG1020         422 VFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPD-LIS------------------  482 (642)
T ss_pred             HHHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhcc-ccC------------------
Confidence            7888999999999998875    89999999999999999999999988765311000 000                  


Q ss_pred             hhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc--CCceeeecCCCCCCCcccccCCCCccc
Q 005867          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLTETCGPTTVCFPDEMCM  434 (673)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~--g~~v~~~YG~tE~~~~~~~~~~~~~~~  434 (673)
                                              ..+.+|.+++||+.++..+...+....  ...+.+.||+||+..............
T Consensus       483 ------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~  538 (642)
T COG1020         483 ------------------------PCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELE  538 (642)
T ss_pred             ------------------------CcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccC
Confidence                                    002489999999999999999877655  468999999999776555443322111


Q ss_pred             -cCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccC-CccccCceEEECCCCcEEEe
Q 005867          435 -VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKII  512 (673)
Q Consensus       435 -~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~-g~~~TGDlg~~~~~G~l~~~  512 (673)
                       ...+|.|++++.+.+.+ .....+  +.+..||+++.|.++..||+++++.+...|.. .+|+|||++++..+|.+.++
T Consensus       539 ~~~piG~p~~n~~~~ild-~~~~~~--p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~l  615 (642)
T COG1020         539 SRVPIGRPVANTQLYILD-QGLRPL--PLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYL  615 (642)
T ss_pred             CCCCcceeeCCCeEEEEC-CCCCcC--CCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeEEEe
Confidence             36899999999999999 555544  44578999999999999999999999999965 49999999999999999999


Q ss_pred             ecCCCeEEcCCceeechHHHHHHHhcCc
Q 005867          513 DRKKNLIKISQGEYVALEYLENVYCVAP  540 (673)
Q Consensus       513 GR~~d~i~~~~G~~v~~~~iE~~l~~~p  540 (673)
                      ||.|+++|+ .|++|.+.+||..+.++|
T Consensus       616 gr~D~qvki-~g~Riel~eie~~l~~~~  642 (642)
T COG1020         616 GRKDSQVKI-RGFRIELGEIEAALAEQP  642 (642)
T ss_pred             ccccceeEe-ceEecCcHHHHHHHhcCC
Confidence            999999998 699999999999998875

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=100.00  E-value=4.3e-35  Score=315.89  Aligned_cols=519  Identities=15%  Similarity=0.147  Sum_probs=364.3

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~-gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      .+|.|+|+++++++||.+|+...   ++.+.+..++||.+|..+|++++.+|..+ .+++||.|++++++++|++++++|
T Consensus       770 ~~ile~Lq~R~a~tp~~~a~~~~---n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~  846 (1363)
T KOG3628|consen  770 LTILEILQWRAAKTPDHIAFTTL---NARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYA  846 (1363)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEe---ccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHH
Confidence            78999999999999999999988   88888889999999999999999999977 689999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCC------hhhHHHHHhccCceEEEEcchhhhhhhcccccccccce---EEEEeCCCcHHHHHHHh
Q 005867          121 CNALSLICVPLYDTLG------PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLR---VMVCFTSLTAEQKEMAV  191 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~  191 (673)
                      |+.+|.+++|+.|...      ...+..+++.+++.+|+++......+.+.......+..   .++..++....      
T Consensus       847 Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~t------  920 (1363)
T KOG3628|consen  847 CLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPET------  920 (1363)
T ss_pred             HHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccchh------
Confidence            9999999999987532      34688899999999999998766655443332222211   12222221110      


Q ss_pred             hCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEE
Q 005867          192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS  271 (673)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~  271 (673)
                          .......+....  ...++.-...+.+|++.+.--++|.--++.++|.++++.+...+..+     .+.+..-++.
T Consensus       921 ----~~k~~~~~~k~~--~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~-----~l~~~rpl~~  989 (1363)
T KOG3628|consen  921 ----IRKRKKNIKKLN--TPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETC-----QLYKSRPLLG  989 (1363)
T ss_pred             ----hhhhhhhhhccC--CCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHH-----ccccCCceEE
Confidence                000111111111  12222334678899999999999999999999999999999999998     7777777777


Q ss_pred             ecchHhHHHHH-HhHHHhhcCcEEEEecC-----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHH
Q 005867          272 FLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF  345 (673)
Q Consensus       272 ~~p~~~~~gl~-~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~  345 (673)
                      +.+++.+.|+. +++...++|...+++++     ++..|+..++++++.-++.+-..+..+.+......+..+.      
T Consensus       990 ~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~------ 1063 (1363)
T KOG3628|consen  990 CSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSK------ 1063 (1363)
T ss_pred             EecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhh------
Confidence            77777777765 57778999999888776     8999999999999999999888888776654443322221      


Q ss_pred             HHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc---CC---ceeeecCCCC
Q 005867          346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---CA---FLVQGYGLTE  419 (673)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~---g~---~v~~~YG~tE  419 (673)
                                              ..++.        ++ ..++..-+.....+.+-+.+.+   |.   .+--.|+..=
T Consensus      1064 ------------------------~gnn~--------s~-s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~ 1110 (1363)
T KOG3628|consen 1064 ------------------------RGNNT--------SS-SIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRV 1110 (1363)
T ss_pred             ------------------------hhccc--------cc-ceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccC
Confidence                                    00100        11 2233333344444555555443   21   1222333322


Q ss_pred             CCCcccccCC---------C-----------------CccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecC
Q 005867          420 TCGPTTVCFP---------D-----------------EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK  473 (673)
Q Consensus       420 ~~~~~~~~~~---------~-----------------~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp  473 (673)
                      --.++.....         +                 .......+|...+++++.|++ ++ ...++.+|+.||||++|.
T Consensus      1111 Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~Ivn-PE-tk~pc~dge~GEIW~~S~ 1188 (1363)
T KOG3628|consen 1111 NPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVN-PE-TKGPCRDGELGEIWVNSA 1188 (1363)
T ss_pred             ChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeC-Cc-cccccccCCcceEEeccc
Confidence            1111111000         0                 011224678889999999999 44 336777889999999999


Q ss_pred             CccccccCCch-hhhhhc----------cCCccccCceEEECC------C----CcEEEeecCCCeEEcCCceeechHHH
Q 005867          474 TLFSGYYKNPD-LTRESI----------IDGWFHTGDIGQILP------N----GVVKIIDRKKNLIKISQGEYVALEYL  532 (673)
Q Consensus       474 ~~~~gy~~~~~-~~~~~~----------~~g~~~TGDlg~~~~------~----G~l~~~GR~~d~i~~~~G~~v~~~~i  532 (673)
                      +.+.+|++-.+ .....|          ..+|.||||+|++..      +    ..||++|-.++.+.+ +|.+.+|.+|
T Consensus      1189 hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl-~GL~h~p~DI 1267 (1363)
T KOG3628|consen 1189 HNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLEL-NGLRHFPSDI 1267 (1363)
T ss_pred             cccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEeecccceeee-cCcccCcchH
Confidence            98888764321 111222          134999999999942      2    358999999999999 7999999999


Q ss_pred             HHHH-hcCcCcceEEEEecCCCCeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccc
Q 005867          533 ENVY-CVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANW  611 (673)
Q Consensus       533 E~~l-~~~p~V~~~~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  611 (673)
                      |..+ +.||.|.+|+|+..  .+.+|.+++...++.            +.+++  +-+.+.+.++               
T Consensus      1268 E~TV~~vH~~I~~cavF~~--~glvVvviE~~gq~~------------~~~Lv--PlIv~~vL~e--------------- 1316 (1363)
T KOG3628|consen 1268 ETTVERVHPSIGGCAVFQA--TGLVVVVIECHGQQE------------LADLV--PLIVNVVLEE--------------- 1316 (1363)
T ss_pred             HHHHHHhcccccceeeEee--CCeEEEEEEecCchh------------Hhhhh--HHHHHHHHhh---------------
Confidence            9999 78999999999986  457778888776331            11111  1112222221               


Q ss_pred             cccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH-HHHHHHh
Q 005867          612 DTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV-EIDQLYE  666 (673)
Q Consensus       612 ~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~-~~~~ly~  666 (673)
                               ++.+...+.||+ +   +.+|+++.|..+|..+++.|.+ +++-+|.
T Consensus      1317 ---------H~iI~dvV~fV~-~---G~~p~~~~gEK~R~~I~~~w~~~kL~~~~v 1359 (1363)
T KOG3628|consen 1317 ---------HYIILDVVAFVD-K---GVFPRNSRGEKQRAHILDSWLAGKLDPIYV 1359 (1363)
T ss_pred             ---------cceEEEEEEEec-C---CccccCCchhhHHHHHHHHHHhcccceeee
Confidence                     555666666776 3   7889999999999999999854 6666653

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=100.00  E-value=8.9e-35  Score=306.33  Aligned_cols=287  Identities=18%  Similarity=0.139  Sum_probs=217.6

Q ss_pred             CceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCC--CCcEEEEecchHhHHHHHH-hHHHhhcCcEEEE
Q 005867          220 FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT--VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGY  296 (673)
Q Consensus       220 ~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~--~~d~~l~~~p~~~~~gl~~-~~~~l~~G~~~v~  296 (673)
                      +..++++|||||||.||+|.++|+++.+.+..+...+     ++.  ..+++++.+|++|.+|+.+ .+.++..|+++++
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~  169 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL-----GERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQ  169 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh-----CcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEe
Confidence            4478999999999999999999999999887776655     443  3468999999999999764 5667889999988


Q ss_pred             ecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHH
Q 005867          297 YHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR  375 (673)
Q Consensus       297 ~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (673)
                      ... ++..+++.++.+  |+++++|+++..+.+..    .                                        
T Consensus       170 ~~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~----------------------------------------  203 (386)
T TIGR02372       170 LAAAPASGIMRHARPG--DLIVGTPFIWEQLADLD----Y----------------------------------------  203 (386)
T ss_pred             cCCCChHHHHHhhccC--CEEEECcHHHHHHHhhC----c----------------------------------------
Confidence            766 777888877653  89999999998875420    0                                        


Q ss_pred             HHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcC-CceeeecCCCCCCCcccccCCCCccccCCcCCCccceeEEEeecCC
Q 005867          376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPE  454 (673)
Q Consensus       376 ~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g-~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~  454 (673)
                           .+++++. ++||+++++++.+.+.+. + ..+++.||+||++++++....      ...|.++|++++++.+   
T Consensus       204 -----~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~~------~~~~~~~p~~~~~~~~---  267 (386)
T TIGR02372       204 -----RLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREAP------DDPFRLLPDLACFADT---  267 (386)
T ss_pred             -----CCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccCC------CCCcccCCCccccCCC---
Confidence                 0136775 678999999999999876 5 469999999999876543221      3456777776654311   


Q ss_pred             CCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHH
Q 005867          455 MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN  534 (673)
Q Consensus       455 ~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~  534 (673)
                      +.          +   .|+                  ..|++|||+|++|++|+|+++||.||+|++ +|++|+|.+||+
T Consensus       268 ~~----------~---~g~------------------~~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~-~G~~V~p~eIE~  315 (386)
T TIGR02372       268 LS----------S---AGL------------------ARRLDLQDRLAWDKDGGFTILGRKDEILQV-GGVNVSPGHVRD  315 (386)
T ss_pred             cc----------C---CCc------------------cceeecCceEEEcCCCcEEEecccCCEEEE-CCEEEcHHHHHH
Confidence            00          0   011                  126889999999999999999999999997 899999999999


Q ss_pred             HHhcCcCcceEEEEecCCCCeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhccccccccccc
Q 005867          535 VYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTG  614 (673)
Q Consensus       535 ~l~~~p~V~~~~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  614 (673)
                      +|.+||+|.+|+|...  ++.+.|+|++.++.                  ....    +.++|.++++ ++         
T Consensus       316 ~l~~~p~V~~~~v~~~--g~~~~a~vv~~~~~------------------~~~~----~~~~l~~~~~-~~---------  361 (386)
T TIGR02372       316 ILERNPRVRAAAVRLD--GRRLKAFIVVAEDA------------------DEAE----LEIELRATAA-RH---------  361 (386)
T ss_pred             HHHcCCCceEEEEEcC--CceEEEEEEECCCC------------------ChHH----HHHHHHHHHH-Hh---------
Confidence            9999999999999642  56788998887532                  1111    1223333333 23         


Q ss_pred             ccccCccceeeeEEEEecCCCCCCCCccccccccc
Q 005867          615 CFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKK  649 (673)
Q Consensus       615 ~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~  649 (673)
                          ||.|++|..+.+++      .+|+|++||++
T Consensus       362 ----L~~~~~P~~i~~~~------~lP~t~~GKi~  386 (386)
T TIGR02372       362 ----LPAPARPDRFRFGT------ELPRTGAGKLA  386 (386)
T ss_pred             ----CCCCCCCcEEEEcc------cCCCCCCCCcC
Confidence                99999999999983      33699999985

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=100.00  E-value=4.6e-32  Score=292.80  Aligned_cols=281  Identities=20%  Similarity=0.189  Sum_probs=206.4

Q ss_pred             CCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHH-HHHhHHHhhcCcEEEE
Q 005867          218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD-RVIEEYFFRRGASVGY  296 (673)
Q Consensus       218 ~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g-l~~~~~~l~~G~~~v~  296 (673)
                      +.++++.+++||||||.||++.++|.++..........+...  ++.++|++++..++.+..+ +...+.++..|++++.
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~--g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  150 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAA--GGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVP  150 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHc--CCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEe
Confidence            456788899999999999999999999876654433222111  6778899888766554333 2234456778999887


Q ss_pred             ecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHH
Q 005867          297 YHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR  375 (673)
Q Consensus       297 ~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (673)
                      ++. ++..+++.|++++||+++++|+++..|++......  ...                                    
T Consensus       151 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~--~~~------------------------------------  192 (422)
T TIGR02155       151 ISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMG--IDP------------------------------------  192 (422)
T ss_pred             cCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcC--CCc------------------------------------
Confidence            765 78999999999999999999999998876433210  000                                    


Q ss_pred             HHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCC--cccccCCCCccccCCcCCCc--cceeEEEee
Q 005867          376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG--PTTVCFPDEMCMVGTAGPVS--VYSELRLEE  451 (673)
Q Consensus       376 ~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~--~~~~~~~~~~~~~~~~G~~~--~~~~v~i~~  451 (673)
                           ...+||.++++||++++++.+.+.+.||+++++.||+||+++  ++..+..      ...|.++  ++..++|+|
T Consensus       193 -----~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~------~~~g~~~~~~~~~~eivd  261 (422)
T TIGR02155       193 -----AQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVE------TQDGLHIWEDHFYPEIID  261 (422)
T ss_pred             -----ccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeecccc------cCCCceEecCeeEEEEEC
Confidence                 003899999999999999999999999999999999999853  2221111      1123333  356677887


Q ss_pred             cCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCC-C-----cEEEeecCCCeEEcCCce
Q 005867          452 VPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-G-----VVKIIDRKKNLIKISQGE  525 (673)
Q Consensus       452 ~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~-G-----~l~~~GR~~d~i~~~~G~  525 (673)
                       ++++ .+++.|+.|||++++.            ++..|+.+||+|||+++++++ |     .+++.||.+|+|++ +|.
T Consensus       262 -~~~g-~~v~~Ge~Gelvvt~~------------~~~~~p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~-~G~  326 (422)
T TIGR02155       262 -PHTG-EVLPDGEEGELVFTTL------------TKEALPVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLII-RGV  326 (422)
T ss_pred             -CCCC-CCCCCCCeeEEEEecC------------CccccceeeEEcCcEEEEECCCCCcccccccccCccCCeEEE-CCE
Confidence             4332 4567788999999973            334456789999999999875 4     46899999999997 799


Q ss_pred             eechHHHHHHHhcCcCcc-eEEEEecCCC--CeEEEEEecCh
Q 005867          526 YVALEYLENVYCVAPIIE-DIWVYGDSLK--SMLVAVVVPCE  564 (673)
Q Consensus       526 ~v~~~~iE~~l~~~p~V~-~~~v~~~~~~--~~~~a~v~~~~  564 (673)
                      +|+|.+||.+|.+||+|. .+.+......  +.+.+.|+...
T Consensus       327 ~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~  368 (422)
T TIGR02155       327 NVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKP  368 (422)
T ss_pred             EECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEec
Confidence            999999999999999998 5544433222  36667666654

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.96  E-value=1e-28  Score=276.52  Aligned_cols=505  Identities=20%  Similarity=0.140  Sum_probs=326.3

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (673)
Q Consensus        40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l  119 (673)
                      .+.++.+.++..+...|+..+..+.+. ....+...+.||.+....++.+++.|...|..+|+.|++++..+.++++..+
T Consensus        34 ~~g~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~  112 (1032)
T KOG1178|consen   34 FMGTLEDSFRRELAEAPENTGHVIIPT-ASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVF  112 (1032)
T ss_pred             hhcchhhHHHHHHhhcccCCCceEeec-ccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeee
Confidence            467888899999999999998877655 3345556789999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEeeCCCCCC----hhhHHH---HHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhh
Q 005867          120 ACNALSLICVPLYDTLG----PGAVNF---ILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ  192 (673)
Q Consensus       120 A~~~~G~~~vpl~~~~~----~~~l~~---~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  192 (673)
                      |+++.|..+++++|.++    ++.+..   .+......++  .....-   ........+...+..              
T Consensus       113 ~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~--~~l~i~---~~~~~~~~~~~sv~~--------------  173 (1032)
T KOG1178|consen  113 AVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIV--RRLNII---DILLNSLFPKLSVET--------------  173 (1032)
T ss_pred             ehhhcceEEEEecCCCcccccchHHHhhhhhheeccceeh--hhhhhH---HHHhhccccccchhh--------------
Confidence            99999999999999998    332222   1111111111  110000   000000000000000              


Q ss_pred             CCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEe
Q 005867          193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF  272 (673)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~  272 (673)
                         ..-.|..+....  .........+|..+++.||||+||.||+|..+|..+.+...+....+     ..+..+++-..
T Consensus       174 ---~~~~f~~~~~~~--~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f-----~~t~s~~~~~~  243 (1032)
T KOG1178|consen  174 ---IADSFQMVLHNE--DTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTF-----PPTGSDRFTFK  243 (1032)
T ss_pred             ---ccchhhhhhccC--CCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccC-----CcCccchhhhh
Confidence               001122221111  11122244677889999999999999999999999999998877665     66666665222


Q ss_pred             cchHhHHHHH-HhHHHhhcCcEEEEecC----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 005867          273 LPLAHILDRV-IEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA  347 (673)
Q Consensus       273 ~p~~~~~gl~-~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (673)
                      ...+...... +....+..|+.+..+..    ++..+.+.++++.++..+.+|++.++++........            
T Consensus       244 ~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~------------  311 (1032)
T KOG1178|consen  244 TSVYFDDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLP------------  311 (1032)
T ss_pred             heeecccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchh------------
Confidence            2222222222 33344556665555544    589999999999999999999999888764332100            


Q ss_pred             HHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcC---CceeEEEEcCCCCCHHHHHHHHHhcC-CceeeecCCCCCCCc
Q 005867          348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLG---GRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGP  423 (673)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~lr~i~~~G~~l~~~~~~~~~~~~g-~~v~~~YG~tE~~~~  423 (673)
                                             .+.....-..+.   +.|+....+|++..-++...+...+- .-...-|++++..+.
T Consensus       312 -----------------------~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~  368 (1032)
T KOG1178|consen  312 -----------------------LLEHAFSLSDLLTKRSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGL  368 (1032)
T ss_pred             -----------------------hhhhhhhcccccccchhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCccc
Confidence                                   000000000011   48999999999999998886555442 223334888888776


Q ss_pred             ccccCCCCcc-------------ccCCcCCCccceeEEEeecCCCCC--CCCCCCCCceEEEecCCccccccCCchhhhh
Q 005867          424 TTVCFPDEMC-------------MVGTAGPVSVYSELRLEEVPEMGY--SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE  488 (673)
Q Consensus       424 ~~~~~~~~~~-------------~~~~~G~~~~~~~v~i~~~~~~~~--~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~  488 (673)
                      .....-....             ....+|..   +.+.+.. ..++.  .+++.++.|.-+-.+.++..|| ..++....
T Consensus       369 ~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~---~~~~~~~-~~~~~~~~~v~~~~l~~~~~~~~~~~~g~-~~~~~~~~  443 (1032)
T KOG1178|consen  369 VSYDDFSPSKVLLTNENVYSVPKFDSIIGSL---TVLESLY-RAGGEGEGGVGKGCLGAEQNLSSWVVDGY-STPENFLP  443 (1032)
T ss_pred             eeHHhhCcccceecceeEEeccchhhccCCC---cceeeee-ccCcccCCcccceeecccccccceeeccc-cchhhcCC
Confidence            5543321100             00011111   1111111 11111  1122223333333445555553 33333222


Q ss_pred             hc------cCCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEE
Q 005867          489 SI------IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAV  559 (673)
Q Consensus       489 ~~------~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~  559 (673)
                      .+      .+.+|+|||.|+.-++|.+.+.||.|++||+ +|.++...+|+.++..||.|.++++....++   +.++||
T Consensus       444 ~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~-rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aF  522 (1032)
T KOG1178|consen  444 NFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKD-RGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAF  522 (1032)
T ss_pred             cccccccchhhcccccccceeecCCCEEEEEeccceEEE-ccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEE
Confidence            22      2458999999999899999999999999998 6999999999999999999999999886544   379999


Q ss_pred             EecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCC
Q 005867          560 VVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMER  639 (673)
Q Consensus       560 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~  639 (673)
                      ++.....                  +...     ...|+.++++ .             |+.|++|..++.+      +.
T Consensus       523 vv~~~~~------------------~~~~-----~~~i~~~l~~-~-------------La~y~vPs~~V~l------~~  559 (1032)
T KOG1178|consen  523 VVERGGS------------------KSVL-----IRDIRNYLKK-E-------------LASYMLPSLVVPL------AK  559 (1032)
T ss_pred             EeccCCC------------------Cchh-----HHHHHHhhcc-c-------------ccceecceEEEEh------hh
Confidence            9998764                  1111     3344444442 3             9999999977776      34


Q ss_pred             CccccccccchHHHHHHHH
Q 005867          640 DLVTATLKKKRNKLLIYYQ  658 (673)
Q Consensus       640 ~p~t~~GKv~R~~l~~~~~  658 (673)
                      +|+|++||||+.+|.+.+.
T Consensus       560 vPl~~~GKvDkkaL~~~~s  578 (1032)
T KOG1178|consen  560 VPLNPNGKVDKKALLEYNS  578 (1032)
T ss_pred             CCcCCCCCcChhhhhhhhh
Confidence            4699999999999998443

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.94  E-value=6.6e-25  Score=237.30  Aligned_cols=260  Identities=17%  Similarity=0.121  Sum_probs=184.9

Q ss_pred             CCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHH-hHHHhhcCcEEEE
Q 005867          218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGY  296 (673)
Q Consensus       218 ~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~-~~~~l~~G~~~v~  296 (673)
                      +.++++.+.+||||||.||+|.+||.++..........+..  .++.++|+++...|+.+..+... .+.++..|++++.
T Consensus        84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~--~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~  161 (445)
T TIGR03335        84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVS--QGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIP  161 (445)
T ss_pred             CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHH--cCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEc
Confidence            45678899999999999999999999988776554433211  16788999999988877655443 3455777887654


Q ss_pred             ecCCHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHH
Q 005867          297 YHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRK  376 (673)
Q Consensus       297 ~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (673)
                      .. .....++.++++++|.+.++|+.+..|.+...+.....                                       
T Consensus       162 ~~-~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~---------------------------------------  201 (445)
T TIGR03335       162 EG-KCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDP---------------------------------------  201 (445)
T ss_pred             CC-chhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc---------------------------------------
Confidence            33 44567889999999999999998877765432210000                                       


Q ss_pred             HHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCccccCCcCCCccceeEEEeecCCCC
Q 005867          377 VKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMG  456 (673)
Q Consensus       377 ~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~  456 (673)
                          ...++|.+++|||++++++.+.+.+.||+++++.||+||++.. ..+...     .....+.+.+.+.|+| ++++
T Consensus       202 ----~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~~-~~c~~~-----~g~h~~~d~~~vEIvD-p~~~  270 (445)
T TIGR03335       202 ----AESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTMC-GECQAV-----AGLHVPEDLVHLDVYD-PRHQ  270 (445)
T ss_pred             ----ccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhhe-EEecCC-----CCccccCCceEEEEEc-CCCC
Confidence                0038999999999999999999999999999999999998632 222110     1122233457788888 5443


Q ss_pred             CCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECC-C----C----cEEEeecCCCeEEcCCceee
Q 005867          457 YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP-N----G----VVKIIDRKKNLIKISQGEYV  527 (673)
Q Consensus       457 ~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~-~----G----~l~~~GR~~d~i~~~~G~~v  527 (673)
                       .+++.|+.|||++++-....        ++..++=--|+|||++++.. +    |    ++...||.||++++ +|.+|
T Consensus       271 -~~vp~Ge~GELvvT~L~~~~--------~r~~~PliRYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~-~g~~~  340 (445)
T TIGR03335       271 -RFLPDGECGRIVLTTLLKPG--------ERCGSLLINYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWI-SGVPF  340 (445)
T ss_pred             -CCCcCCCceEEEEEecCCCC--------ccCCceEEEeecCceEEEecCCCCCCCCCcceeCCCcccCceEEE-CCEEe
Confidence             56678899999998742110        00001111399999999732 2    2    24557999999999 79999


Q ss_pred             chHHHHHHHhcCc
Q 005867          528 ALEYLENVYCVAP  540 (673)
Q Consensus       528 ~~~~iE~~l~~~p  540 (673)
                      +|.+||++|.+++
T Consensus       341 ~p~~ie~~l~~~~  353 (445)
T TIGR03335       341 NRVDVERAVFQRE  353 (445)
T ss_pred             CHHHHHHHHhccC
Confidence            9999999999953

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.92  E-value=1.1e-23  Score=205.66  Aligned_cols=221  Identities=15%  Similarity=0.043  Sum_probs=163.4

Q ss_pred             HHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHhHHHHHHHHHhcCC
Q 005867           48 FSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACNALSL  126 (673)
Q Consensus        48 l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~-~gv~~gd~V~i~~~~~~e~~~~~lA~~~~G~  126 (673)
                      |..+++++|+++|+++.   ++.+++-+++||+||.+++.++|+.|++ .|+++||+|+|+++|+++++++++||+++|+
T Consensus         2 ~~~~~~~~p~~~al~~~---~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~   78 (227)
T TIGR03089         2 LSPLLAADPASPRLTFY---DDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGV   78 (227)
T ss_pred             hhhhhhhCCCCcEEEEE---cCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence            46778899999999864   3322122579999999999999999998 6999999999999999999999999999999


Q ss_pred             eEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCC--CcHHHHHHHhhCCCceecHHHHH
Q 005867          127 ICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS--LTAEQKEMAVQTGIKPYSWDEFL  204 (673)
Q Consensus       127 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  204 (673)
                      +++|++             .+++++++++++....+..      .  ..++.+..  .....   .........+|.+.+
T Consensus        79 v~vp~n-------------~s~a~~~v~~~~~~~~~~~------~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  134 (227)
T TIGR03089        79 EVVLAG-------------DPDADVVVTGPDRLAAAAG------S--GEVVALSLDPLGRRV---AGELPPGVIDFAPEV  134 (227)
T ss_pred             EEEeCC-------------CCCCCEEEeCcchhhhccc------C--CceEEEeccccccCC---CCCCCCcccchhhhh
Confidence            999995             6789999999877665421      1  11222210  00000   000011234666655


Q ss_pred             hcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHH-
Q 005867          205 HLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-  283 (673)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~-  283 (673)
                      ........+.....++|++.++||||+         +|++++...    ..+     +++++|+++ .+|++|.+|+.. 
T Consensus       135 ~~~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~-----~l~~~D~~l-~~Pl~H~~gl~~~  195 (227)
T TIGR03089       135 RVHGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAA-----GLPPGDRVL-VLAWTDLEDFLAT  195 (227)
T ss_pred             hccCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhc-----CCCCCCeEE-ecCCCchHHHHHH
Confidence            432222222214567999999999986         566655554    233     688999999 999999999865 


Q ss_pred             hHHHhhcCcEEEEecC-CHHHHHHHhhhccCe
Q 005867          284 EEYFFRRGASVGYYHG-DLNALRDDLMELKPT  314 (673)
Q Consensus       284 ~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t  314 (673)
                      ++.++..|+++++++. ++..+++.|+++++|
T Consensus       196 ~~~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       196 LLAPLAAGGSLVLVTHPDPARLDQIAETERVT  227 (227)
T ss_pred             HHHHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence            6778999999999887 999999999999987

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.91  E-value=4.8e-22  Score=203.90  Aligned_cols=283  Identities=23%  Similarity=0.227  Sum_probs=209.7

Q ss_pred             CCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchH-hHHHHHHhHHHhhcCcEEEE
Q 005867          218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA-HILDRVIEEYFFRRGASVGY  296 (673)
Q Consensus       218 ~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~-~~~gl~~~~~~l~~G~~~v~  296 (673)
                      +.++...|-.||||||.|+.+.+++..+......+...+...  +...+|++..+.-.. +..|+...+++-..|++++-
T Consensus        88 ~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~--g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip  165 (438)
T COG1541          88 PKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSA--GVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIP  165 (438)
T ss_pred             cccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHc--cCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEc
Confidence            455666688999999999999999999988888877766333  677888876655422 22333344455557777766


Q ss_pred             ecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHH
Q 005867          297 YHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR  375 (673)
Q Consensus       297 ~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (673)
                      .+. +...-+..++++++|++.++|+.+..|.+.+.+...  .+                              +.    
T Consensus       166 ~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~--~~------------------------------~~----  209 (438)
T COG1541         166 ISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGI--DP------------------------------DK----  209 (438)
T ss_pred             cCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCC--Ch------------------------------hh----
Confidence            655 899999999999999999999999999887665420  00                              00    


Q ss_pred             HHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcc-cccCCCCccccCCcCCCccceeEEEeecCC
Q 005867          376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPT-TVCFPDEMCMVGTAGPVSVYSELRLEEVPE  454 (673)
Q Consensus       376 ~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~-~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~  454 (673)
                             .+||.+++|+|++++++.+.+.+.||+..++.||+||..+.. ..+....     .....-+..-+.++| |+
T Consensus       210 -------~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~eC~~~~-----glhi~eD~~~~Ei~d-P~  276 (438)
T COG1541         210 -------LSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGECTERN-----GLHIWEDHFIFEIVD-PE  276 (438)
T ss_pred             -------cceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCccccccccc-----CCCcchhhceeeeec-CC
Confidence                   389999999999999999999999999999999999998774 3232211     112233456677777 44


Q ss_pred             CCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCC----Cc-----EEEeecCCCeEEcCCce
Q 005867          455 MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GV-----VKIIDRKKNLIKISQGE  525 (673)
Q Consensus       455 ~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~----G~-----l~~~GR~~d~i~~~~G~  525 (673)
                      .+ .++++|+.|||.++.-.            +..++---|+|||+..+.++    |+     -.+.||.||++++ .|.
T Consensus       277 t~-e~l~dge~GelV~T~L~------------~~~~PlIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~-~G~  342 (438)
T COG1541         277 TG-EQLPDGERGELVITTLT------------KEGMPLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIV-RGV  342 (438)
T ss_pred             cC-ccCCCCCeeEEEEEecc------------ccCcceEEEEcCCeeEecccCCCCCCccccccccCcccccEEEE-CCE
Confidence            44 57777889999998721            21122224999999999763    32     4789999999999 599


Q ss_pred             eechHHHHHHHhcCcCcc---eEEEEecCCCCeEEEEEecChh
Q 005867          526 YVALEYLENVYCVAPIIE---DIWVYGDSLKSMLVAVVVPCEE  565 (673)
Q Consensus       526 ~v~~~~iE~~l~~~p~V~---~~~v~~~~~~~~~~a~v~~~~~  565 (673)
                      +|+|..||.+|.+.+.+.   ++++......+.+.+-|++.++
T Consensus       343 ~vfp~~ie~~l~~~~~~~~~yqi~~~~~~~~d~L~V~vE~~~~  385 (438)
T COG1541         343 NVFPSQIERVLLQIPEVTPHYQIILTRNGGLDELTVRVELENE  385 (438)
T ss_pred             EeCHHHHHHHHhcccCCCceEEEEEecCCCCceEEEEEEecCc
Confidence            999999999999999999   4444442234578888888753

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.87  E-value=1.8e-20  Score=203.58  Aligned_cols=525  Identities=14%  Similarity=0.112  Sum_probs=347.4

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHH-HHHHcCCCCCCEEEEEcCCc--HhHH
Q 005867           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVS-ALRASGAEPGCRVGIYGANC--PQWV  115 (673)
Q Consensus        39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~-~L~~~gv~~gd~V~i~~~~~--~e~~  115 (673)
                      .++..+..+++++-.+++..+|.++.   |.++. ...+||..+..++.++|+ .|-+.|+.++|+|.+++..+  .|++
T Consensus        91 ~a~~d~~avl~~~~nhs~~~ta~i~i---d~kgk-~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~  166 (1363)
T KOG3628|consen   91 MALTDIIAVLRYRRNHSATSTAHICI---DKKGK-ATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFL  166 (1363)
T ss_pred             hhhcchHHHHHhhccCCCCCceEEEE---cCCCc-eeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHh
Confidence            45777888888888889999999998   77666 789999999999999999 56677999999999999887  9999


Q ss_pred             HHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCC
Q 005867          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (673)
Q Consensus       116 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  195 (673)
                      +..++|..+|.+++|+....+.+++..+++....+++++............... ...+.+                   
T Consensus       167 isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~-s~~k~v-------------------  226 (1363)
T KOG3628|consen  167 ISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPV-SLAKAV-------------------  226 (1363)
T ss_pred             hhhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcc-cHHHHH-------------------
Confidence            999999999999999999999999999999999999999887666553322100 000000                   


Q ss_pred             ceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhcc---------------cc
Q 005867          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ---------------FE  260 (673)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~---------------~~  260 (673)
                      .++...++-..........+...-. .++|-||++++|.--|++++|. ++.+.+.+......               ..
T Consensus       227 ~~w~t~~~k~~~~~~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v  304 (1363)
T KOG3628|consen  227 AWWKTNDFKGNYTKDKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHV  304 (1363)
T ss_pred             HhhhcccccceeehhhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhc
Confidence            0111111110000011111222222 7999999999999999999998 55555444332211               11


Q ss_pred             CCCCCCcEEEEecchHhHHHHHH-hHHHhhcCcEEEEecC----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHH
Q 005867          261 DKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE  335 (673)
Q Consensus       261 ~~~~~~d~~l~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~  335 (673)
                      .+....++++....+....|+++ .+.++++|.+.+.++.    .++.+...+.+++.+++......+.+....+.+.+.
T Consensus       305 ~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~  384 (1363)
T KOG3628|consen  305 FPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPK  384 (1363)
T ss_pred             cccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcc
Confidence            24456778888888888888876 5678999999887775    889999999999999999877777665544333211


Q ss_pred             hhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc----C---
Q 005867          336 ELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC----C---  408 (673)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~----g---  408 (673)
                      ...                                  .+.+-....+++||.+.+.-..++.+..+...+.+    |   
T Consensus       385 a~~----------------------------------s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~  430 (1363)
T KOG3628|consen  385 ATL----------------------------------SFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETN  430 (1363)
T ss_pred             ccc----------------------------------chhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcC
Confidence            111                                  11112222346999999999999988665444432    2   


Q ss_pred             ---------------CceeeecCCCCCCCcccccCCCCc-----------------------------cccCCcCCCccc
Q 005867          409 ---------------AFLVQGYGLTETCGPTTVCFPDEM-----------------------------CMVGTAGPVSVY  444 (673)
Q Consensus       409 ---------------~~v~~~YG~tE~~~~~~~~~~~~~-----------------------------~~~~~~G~~~~~  444 (673)
                                     .-....=+++|.+......+....                             .....+|...+|
T Consensus       431 ~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g  510 (1363)
T KOG3628|consen  431 VKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPG  510 (1363)
T ss_pred             cceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceeccc
Confidence                           112222344555544333222000                             112356666665


Q ss_pred             eeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhcc------C-------CccccCceEEECCCCcEEE
Q 005867          445 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII------D-------GWFHTGDIGQILPNGVVKI  511 (673)
Q Consensus       445 ~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~------~-------g~~~TGDlg~~~~~G~l~~  511 (673)
                       ++.+.-++++....+..++.|||||.++.+..+||.-+..|...|.      .       .|.|||-+|++. .|.+++
T Consensus       511 -~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~-~gki~v  588 (1363)
T KOG3628|consen  511 -DATLAVVNPDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVH-NGKIYV  588 (1363)
T ss_pred             -ceEEEEeCCCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeee-CCeEEE
Confidence             3333333456666777789999999999999999998888877772      1       289999999997 555777


Q ss_pred             eecCCCeEEcCCceeechH----------HHHHHHhcCcCcceEEEEecCCCCeEEEEEecChhHHHHHHHHcCCCCcHH
Q 005867          512 IDRKKNLIKISQGEYVALE----------YLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFL  581 (673)
Q Consensus       512 ~GR~~d~i~~~~G~~v~~~----------~iE~~l~~~p~V~~~~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~  581 (673)
                      +|-.+|++.--.|..++..          -|+.+++..+.|-++.++-   ++.++.+++-++...+.            
T Consensus       589 l~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~---~E~~~Vv~~esP~a~e~------------  653 (1363)
T KOG3628|consen  589 LGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE---DEHIVVVVLESPDATEE------------  653 (1363)
T ss_pred             EEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee---cceEEEEEEeCcchhhh------------
Confidence            7766665542235554433          3667778888899999886   44444444444443211            


Q ss_pred             HHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH-H
Q 005867          582 ELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV-E  660 (673)
Q Consensus       582 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~-~  660 (673)
                         +..++...+.+.+..+.+                +-.|    -+.+++    ...+|||+.|-+.-...++.|.+ .
T Consensus       654 ---~~~q~~~~v~q~l~~iHq----------------v~vy----CilivP----~~tLPrt~~~Gi~~~~~k~~F~~G~  706 (1363)
T KOG3628|consen  654 ---NSFQWMSRVFQALDSIHQ----------------VGVY----CILIVP----ANTLPRTPLGGIHNNECKQAFLEGS  706 (1363)
T ss_pred             ---hhhhHHHHHHHHHHHHhc----------------ccce----EEEEec----cccCCCccccccccHHHHHHHHcCC
Confidence               222333344444444433                2222    334442    36788999999999999999976 4


Q ss_pred             HHHHHhh
Q 005867          661 IDQLYEK  667 (673)
Q Consensus       661 ~~~ly~~  667 (673)
                      +...|.+
T Consensus       707 L~~~~v~  713 (1363)
T KOG3628|consen  707 LPPSYVL  713 (1363)
T ss_pred             CCcceee
Confidence            5544443

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.74  E-value=7.1e-18  Score=174.12  Aligned_cols=120  Identities=16%  Similarity=0.067  Sum_probs=97.6

Q ss_pred             ccCCccccCceEEE-CCCCcEEEeecCCCeEEcCCc---eeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEec
Q 005867          490 IIDGWFHTGDIGQI-LPNGVVKIIDRKKNLIKISQG---EYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVP  562 (673)
Q Consensus       490 ~~~g~~~TGDlg~~-~~~G~l~~~GR~~d~i~~~~G---~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~  562 (673)
                      +.+|||+|||+|++ |++|+|++.||.+      +|   ++|+|. ||++|.+||+|.+|+|++.+++   +.++|+|++
T Consensus       206 ~~dgW~~TGDlg~~~d~dG~l~~~gR~~------~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~  278 (365)
T PRK09188        206 PSRIWLATGKKVYNFITRGLFSWSDGEG------TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEA  278 (365)
T ss_pred             ccCcEEeCCCEEEEEcCCCeEEEEecCc------CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEE
Confidence            46899999999998 7999999999997      57   799999 9999999999999999997765   479999987


Q ss_pred             ChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCcc
Q 005867          563 CEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLV  642 (673)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~  642 (673)
                      ....                  +..++++++.+.                      ||. ++|+.+.+++.      +|+
T Consensus       279 ~~~~------------------~~~el~~~l~~~----------------------L~~-kvP~~v~~v~~------lP~  311 (365)
T PRK09188        279 ELPA------------------DEKSLRARLAGA----------------------KPP-KPPEHIQPVAA------LPR  311 (365)
T ss_pred             CCCC------------------CHHHHHHHHHhh----------------------chh-cCCcEEEEECC------CCC
Confidence            6321                  334455554443                      999 99999999842      369


Q ss_pred             ccccccchHHHHHHHHHHHHH
Q 005867          643 TATLKKKRNKLLIYYQVEIDQ  663 (673)
Q Consensus       643 t~~GKv~R~~l~~~~~~~~~~  663 (673)
                      |++||++|++|++.+.+..+.
T Consensus       312 t~~GKi~R~~Lr~~~~~~~~~  332 (365)
T PRK09188        312 DADGTVRDDILRLIAMNQIDE  332 (365)
T ss_pred             CCCCCccHHHHHHHhhccccc
Confidence            999999999999887444333

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.68  E-value=3.4e-14  Score=150.36  Aligned_cols=259  Identities=17%  Similarity=0.172  Sum_probs=163.7

Q ss_pred             EEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEec-chHhHHHHHHhHHHhhcCcEEEEec--C
Q 005867          223 CTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL-PLAHILDRVIEEYFFRRGASVGYYH--G  299 (673)
Q Consensus       223 a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~-p~~~~~gl~~~~~~l~~G~~~v~~~--~  299 (673)
                      ..+..||||||.|-.+..+...............  ...+...++++...+ .-.+.+....   .  ....+..++  .
T Consensus       102 ~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~--~~~g~~~g~r~a~~~~~~~~ly~~~~---~--~~~~~~~~~l~~  174 (430)
T TIGR02304       102 ISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKV--LPDGLFAKHRIAFFLRADNNLYQSVN---N--RWISLDFFDLLA  174 (430)
T ss_pred             EEEEECCCCCCCceEEEECHHHHHHHHHHHHhhh--CccccccCCcEEEEEccChhHHHHHH---h--ccceeeecCCCc
Confidence            4567899999999999999987755544332222  111344555554442 1112221110   0  111122222  3


Q ss_pred             CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHH
Q 005867          300 DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKA  379 (673)
Q Consensus       300 ~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (673)
                      +.+.+++.|++++|+++.++|+.+..|++...+...  .                                         
T Consensus       175 ~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l--~-----------------------------------------  211 (430)
T TIGR02304       175 PFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGEL--T-----------------------------------------  211 (430)
T ss_pred             CHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCC--C-----------------------------------------
Confidence            889999999999999999999999998875443210  0                                         


Q ss_pred             HcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCccccCCcCCCccc--eeEEEeecCCCCC
Q 005867          380 RLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY--SELRLEEVPEMGY  457 (673)
Q Consensus       380 ~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~--~~v~i~~~~~~~~  457 (673)
                         .+++.++++||.+++...+.+.+.||++|++.||+|| |.++..+..+.      ...--..  +|..++| +++  
T Consensus       212 ---~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~eC~~g~------lHl~ed~~~vE~~ivD-~~~--  278 (430)
T TIGR02304       212 ---IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLASTCRCGT------LHLNEDLVHIEKQYLD-EHK--  278 (430)
T ss_pred             ---CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEEecCCCC------EEEccccEEEEeeEEC-CCC--
Confidence               2789999999999999999999999999999999999 55544443221      1111112  2222555 322  


Q ss_pred             CCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCC----Cc----E-EEeecCCCeEEc--CCcee
Q 005867          458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GV----V-KIIDRKKNLIKI--SQGEY  526 (673)
Q Consensus       458 ~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~----G~----l-~~~GR~~d~i~~--~~G~~  526 (673)
                             .++..|++      +.      +..++=--|+|||++.+.++    |.    + .+.||.+|++++  .+|..
T Consensus       279 -------~~~~ViT~------L~------n~~~PlIRYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~  339 (430)
T TIGR02304       279 -------RFVPIITD------FT------RTTQPIVRYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDE  339 (430)
T ss_pred             -------ceEEEEec------CC------CccceEEeeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCe
Confidence                   13344444      11      11111224999999988543    32    3 488999999984  34555


Q ss_pred             --echHHHHHHH-hcCcCcceEEEEecCCCCeEEEEEecCh
Q 005867          527 --VALEYLENVY-CVAPIIEDIWVYGDSLKSMLVAVVVPCE  564 (673)
Q Consensus       527 --v~~~~iE~~l-~~~p~V~~~~v~~~~~~~~~~a~v~~~~  564 (673)
                        ++|..++.++ ...++|.+.-++... .+.+...++...
T Consensus       340 v~v~p~~~~~~i~~~~~~i~~yQi~Q~~-~~~l~v~~~~~~  379 (430)
T TIGR02304       340 QTVFPDFIRRVILFTLPLIVEYRVLQTG-SAQLELIADCEL  379 (430)
T ss_pred             EEeCHHHHHHHHHhcCCCCceEEEEEcc-CCeEEEEEEeCh
Confidence              4889998885 568899999888754 455555555543

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.95  E-value=1.3e-07  Score=98.27  Aligned_cols=243  Identities=18%  Similarity=0.203  Sum_probs=143.1

Q ss_pred             CCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHh---HHH--HHHhHHHhhcCc
Q 005867          218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH---ILD--RVIEEYFFRRGA  292 (673)
Q Consensus       218 ~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~---~~g--l~~~~~~l~~G~  292 (673)
                      +++++..++.||||||.|--+.+.+..+..+...+...+......-...-.++...|-..   ..+  ....+..+..+.
T Consensus        87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~  166 (365)
T PF04443_consen   87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS  166 (365)
T ss_pred             ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence            345677889999999998778888777776665555544322111111222333333321   111  111222334444


Q ss_pred             EEEEecC---CHHHHHHHhh----hccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCc
Q 005867          293 SVGYYHG---DLNALRDDLM----ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA  365 (673)
Q Consensus       293 ~~v~~~~---~~~~~~~~i~----~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (673)
                      . .+...   +...+...+.    +.++.++++.|.++-.++..+++....+.                           
T Consensus       167 ~-~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~---------------------------  218 (365)
T PF04443_consen  167 R-FALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFR---------------------------  218 (365)
T ss_pred             e-eeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCccc---------------------------
Confidence            4 33332   5666665554    56789999999877766554443321111                           


Q ss_pred             chhHHHHhHHHHHHHcCCceeEEEEcC------CCCCH-HHHHHHHHhcCC----ceeeecCCCCCCCcccccCCCCccc
Q 005867          366 SPLADLLAFRKVKARLGGRLRLVISGG------APLST-EVEEFLRVTCCA----FLVQGYGLTETCGPTTVCFPDEMCM  434 (673)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~lr~i~~~G------~~l~~-~~~~~~~~~~g~----~v~~~YG~tE~~~~~~~~~~~~~~~  434 (673)
                                     +.+..+.+-.||      +.++. ++.+.+.+.||+    .+++.||+||.......+...    
T Consensus       219 ---------------L~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~----  279 (365)
T PF04443_consen  219 ---------------LPKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGHG----  279 (365)
T ss_pred             ---------------CCCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCCC----
Confidence                           002345555555      56765 577778888887    699999999988665544221    


Q ss_pred             cCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCC--------
Q 005867          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN--------  506 (673)
Q Consensus       435 ~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~--------  506 (673)
                        ..  +.|-. +.+.| +. +..+++.|+.|-|.+-.+... .|            -+..-|.|+|.+..+        
T Consensus       280 --~~--~~p~w-V~iRD-p~-tl~~~~~Ge~Gli~vidl~~~-s~------------p~~IlTeDlGvl~~~~~c~cr~g  339 (365)
T PF04443_consen  280 --HF--HVPPW-VIIRD-PE-TLEPLPPGETGLIQVIDLANT-SY------------PGFILTEDLGVLHGDDDCGCRKG  339 (365)
T ss_pred             --cc--cCCCe-EEEEC-CC-CCcCCCCCCeeEEEEEccccc-CC------------CcEEEEcceeeecCCCCCCCccC
Confidence              11  22222 56666 43 467888889999988776432 12            233679999988654        


Q ss_pred             CcEEEeecCCCeEEcCCceeech
Q 005867          507 GVVKIIDRKKNLIKISQGEYVAL  529 (673)
Q Consensus       507 G~l~~~GR~~d~i~~~~G~~v~~  529 (673)
                      .++.++||.+..=. + |.....
T Consensus       340 ~~f~vlGR~~~ae~-R-GCs~~~  360 (365)
T PF04443_consen  340 KYFEVLGRADGAEI-R-GCSLTF  360 (365)
T ss_pred             CEEEEEeCCCCCcc-C-CcHHHH
Confidence            26999999886553 3 766533

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=98.77  E-value=1.4e-08  Score=79.89  Aligned_cols=70  Identities=20%  Similarity=0.146  Sum_probs=50.3

Q ss_pred             HHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccc
Q 005867          531 YLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVI  607 (673)
Q Consensus       531 ~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  607 (673)
                      |||++|.+||+|.+|+|++.+++   +.++|+|++ .                    . .++++++.+.           
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~-~--------------------~-~~i~~~~~~~-----------   47 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL-D--------------------E-EEIRDHLRDK-----------   47 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE-H--------------------H-HHHHHHHHHH-----------
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe-e--------------------e-cccccchhhh-----------
Confidence            69999999999999999997755   489999999 2                    1 3455555544           


Q ss_pred             cccccccccccCccceeeeEEEEecCCCCCCCCccccccc
Q 005867          608 FANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLK  647 (673)
Q Consensus       608 ~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GK  647 (673)
                                 ||+|++|+.+.++...   +.+|+|++||
T Consensus        48 -----------l~~~~~P~~~~~v~~~---~~lP~t~~GK   73 (73)
T PF13193_consen   48 -----------LPPYMVPRRIRFVRLD---EELPRTPSGK   73 (73)
T ss_dssp             -----------S-GGGS-SEEEEEEES---SSEEBETTSS
T ss_pred             -----------CCCcceeeEEEEcccc---CcCCCCCCCC
Confidence                       9999999555554211   2257999998

...

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=98.43  E-value=2e-06  Score=94.61  Aligned_cols=161  Identities=20%  Similarity=0.185  Sum_probs=90.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHHhcC-Cc-eeeecCCCCCCCcccccCCCCccccCCcCCCccce-eEEEeecCCCC--
Q 005867          382 GGRLRLVISGGAPLSTEVEEFLRVTCC-AF-LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYS-ELRLEEVPEMG--  456 (673)
Q Consensus       382 ~~~lr~i~~~G~~l~~~~~~~~~~~~g-~~-v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~-~v~i~~~~~~~--  456 (673)
                      =++|+.|.+.+..-.......+++.+| ++ +...|++||+-...-.. .+.     ..+...++. =...++.++..  
T Consensus       266 WP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i~i~~~-~~~-----~~~~l~~~~~ffEFip~~~~~~~  339 (528)
T PF03321_consen  266 WPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFIGIPLD-PED-----PGYVLAPDSGFFEFIPVDEDEQN  339 (528)
T ss_dssp             STT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEEEEES--CCC-------EEE-TTSSEEEEEE-STT---
T ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEEEEecC-CCC-----CceEeecCCeEEEEEeccCCccc
Confidence            368997777666666677777877775 33 44689999964332222 111     111111111 22233322211  


Q ss_pred             ----C-----CCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECC--CC--cEEEeecCCCeEEcCC
Q 005867          457 ----Y-----SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP--NG--VVKIIDRKKNLIKISQ  523 (673)
Q Consensus       457 ----~-----~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~--~G--~l~~~GR~~d~i~~~~  523 (673)
                          .     ..+..|+.-||.++..   .|.|+             |+.||+.++..  ++  .+.|+||.+.++.+ .
T Consensus       340 ~~~~~~~l~~~ele~G~~YelviTt~---~GLyR-------------Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l-~  402 (528)
T PF03321_consen  340 PSEQPKTLLLHELEVGEEYELVITTN---SGLYR-------------YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSL-F  402 (528)
T ss_dssp             ----SSSEEGGG--TT-EEEEEEEST---TS-SS-------------EEECEEEEEEEEETTEEEEEEEEETTEEE-S-S
T ss_pred             ccCCCceecHHHhcCCCeEEEEEecc---cceee-------------eecCCEEEEeeccCCCcEEEEeccCCceeec-c
Confidence                1     1123445667888763   33332             99999999853  34  69999999999998 6


Q ss_pred             ceeechHHHHHHHhcC-----cCcceEEEEec---CCCCeEEEEEecChh
Q 005867          524 GEYVALEYLENVYCVA-----PIIEDIWVYGD---SLKSMLVAVVVPCEE  565 (673)
Q Consensus       524 G~~v~~~~iE~~l~~~-----p~V~~~~v~~~---~~~~~~~a~v~~~~~  565 (673)
                      |++++-.+|++++.+.     -.+.+..+...   ..++.-+.++++...
T Consensus       403 gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~  452 (528)
T PF03321_consen  403 GEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELEGE  452 (528)
T ss_dssp             S--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEECS-
T ss_pred             eeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeCCC
Confidence            9999999999999554     34567777665   234577777777765

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=97.88  E-value=0.0016  Score=71.67  Aligned_cols=141  Identities=15%  Similarity=0.079  Sum_probs=83.7

Q ss_pred             HHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceee-ecCCCCCCCcccccCCCCccccCCcCCCcccee-EEEeecCCC
Q 005867          379 ARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQ-GYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSE-LRLEEVPEM  455 (673)
Q Consensus       379 ~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~-~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~-v~i~~~~~~  455 (673)
                      .++=+++++|.+....-.......++..+ |.+++. +||+||+-+..=..+.....  ...+..+|+.. ...++++++
T Consensus       289 ~rLWP~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~ginl~p~~~p~--~~sy~L~p~~~yFEFip~~~~  366 (606)
T PLN02247        289 KRLWPRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINLKPLSDPS--DVSYTLLPNMAYFEFLPVDKN  366 (606)
T ss_pred             HHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEEEeccCcCCCcc--CCceeecCCcEEEEEeecCCC
Confidence            34448899988766555666667777666 566564 89999975433222111010  11222222211 122221111


Q ss_pred             CC---------------------------CCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEEC----
Q 005867          456 GY---------------------------SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL----  504 (673)
Q Consensus       456 ~~---------------------------~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~----  504 (673)
                      ..                           ..+..|+.-||.|+.   +.|.+             .||.||+.++.    
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvTt---~~GLY-------------RYrlGDvv~V~GF~n  430 (606)
T PLN02247        367 NGEVIHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTT---FTGLY-------------RYRVGDILMVTGFYN  430 (606)
T ss_pred             cccccccccccccccccccccccCceecHHHccCCCeEEEEEEe---cCceE-------------EEecCCEEEEeeecC
Confidence            10                           012234556777765   22322             28999988773    


Q ss_pred             CCCcEEEeecCCCeEEcCCceeechHHHHHHHhc
Q 005867          505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV  538 (673)
Q Consensus       505 ~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~  538 (673)
                      ..-.|.|++|.+.+..+ .|+|+.-.++..++.+
T Consensus       431 ~~P~~~Fv~R~~~vlsi-~gEK~tE~~l~~Av~~  463 (606)
T PLN02247        431 NAPQFRFVQRRNVVLSI-DTDKTNEEDLLKAVTQ  463 (606)
T ss_pred             CCceEEEEecCCceeec-ccccCCHHHHHHHHHH
Confidence            34579999999999998 7999999998888854

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=97.77  E-value=0.0029  Score=69.48  Aligned_cols=165  Identities=16%  Similarity=0.088  Sum_probs=94.7

Q ss_pred             HHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCcee-eecCCCCCCCcccccCCCCccccCCc-CCCccc---eeEEEeec
Q 005867          379 ARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTA-GPVSVY---SELRLEEV  452 (673)
Q Consensus       379 ~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~-G~~~~~---~~v~i~~~  452 (673)
                      .++=+++++|.+....-.......++..+ |.+++ .+|++||+-+..=..+.   ..+..+ +..+|+   .|+.-++.
T Consensus       300 ~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~~ginl~P~---~~p~~~sy~L~p~~~yFEFip~~~  376 (612)
T PLN02620        300 TRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPL---CKPSEVSYTLIPTMAYFEFLPVHR  376 (612)
T ss_pred             HHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceEEEeccCCC---CCcccceeeecCCcEEEEEeeccC
Confidence            44558899888766656666667776655 56655 58999997543322221   111111 122222   22222220


Q ss_pred             CCC-----------------C---CCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEEC----CCCc
Q 005867          453 PEM-----------------G---YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL----PNGV  508 (673)
Q Consensus       453 ~~~-----------------~---~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~----~~G~  508 (673)
                      .++                 .   ...+..|+.-||.|+.   +.|.+             .|+.||+.++.    ..-.
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt---~~GLy-------------RYrlGDvv~V~Gf~n~~P~  440 (612)
T PLN02620        377 NNGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTT---YAGLY-------------RYRVGDVLRVAGFKNKAPQ  440 (612)
T ss_pred             cccccccccccccccccccCccccHHHccCCCeEEEEEEe---cCceE-------------EEecCCEEEEeeecCCCce
Confidence            000                 0   0113344556777765   23322             28999988874    3457


Q ss_pred             EEEeecCCCeEEcCCceeechHHHHHHHhcCc--------CcceEEEEec--CCCCeEEEEEecC
Q 005867          509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAP--------IIEDIWVYGD--SLKSMLVAVVVPC  563 (673)
Q Consensus       509 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p--------~V~~~~v~~~--~~~~~~~a~v~~~  563 (673)
                      |.|++|.+-+..+ .|+|++-.++..++.+.-        .+.|......  ..++.-+.++++.
T Consensus       441 ~~Fv~R~~~~lsi-~gEK~tE~~l~~Av~~a~~~l~~~~~~l~dyts~~d~~~~PghYvl~~El~  504 (612)
T PLN02620        441 FSFICRKNVVLSI-DSDKTDEVELQNAVKNAVNHLVPFDASLTEYTSYADTSTIPGHYVLFWELC  504 (612)
T ss_pred             EEEEeecCceeec-ccccCCHHHHHHHHHHHHHhhcccCceeeeEEeccccCCCCCceEEEEEEe
Confidence            9999999999998 799999999888874322        1222332222  2345777788763

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=97.75  E-value=0.00067  Score=75.09  Aligned_cols=135  Identities=14%  Similarity=0.158  Sum_probs=78.3

Q ss_pred             cCCc---eeEEEEcCCCCCHHHHHHHHHhcC-C-ceeeecCCCCCCCcccccCCCCccccCCcCCC--ccceeEEEeecC
Q 005867          381 LGGR---LRLVISGGAPLSTEVEEFLRVTCC-A-FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV--SVYSELRLEEVP  453 (673)
Q Consensus       381 ~~~~---lr~i~~~G~~l~~~~~~~~~~~~g-~-~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~--~~~~~v~i~~~~  453 (673)
                      +-++   |..++.||..   .....++..+| . .+...|++||+-+..-..+.   ..+...+..  ..+.-...++++
T Consensus       300 lWPnl~~i~~~~~G~~~---~Y~~~l~~~~g~~~~~~~~Y~ASEg~~gi~~~~~---~~p~~~~~~l~~~~~ffEFiP~~  373 (597)
T PLN02249        300 IWPNTKYLDVIVTGAMA---QYIPMLEYYSGGLPMASTIYASSESYFGINLNPM---CKPSEVSYTIMPNMAYFEFLPHN  373 (597)
T ss_pred             hCCCCCeEEEEecCChH---HHHHHHHHHcCCCccccccccccceEEEeecCCC---CCCCCcceEecCCcEEEEeeecc
Confidence            3367   5555666644   55566666663 3 35679999996533222111   111111111  112223333221


Q ss_pred             CC-C-------C---CCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECC----CCcEEEeecCCCe
Q 005867          454 EM-G-------Y---SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNL  518 (673)
Q Consensus       454 ~~-~-------~---~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~----~G~l~~~GR~~d~  518 (673)
                      +. .       .   ..+..|+.-||.|+.   +.|.|             .|+.||..++..    --.|.|+||.+.+
T Consensus       374 ~~~~~~~~~~~~v~l~eVe~G~~Y~lVvTT---~~GLy-------------RY~iGDvVrvtgf~~~~P~i~F~gR~~~~  437 (597)
T PLN02249        374 HDGDGALDETSLVELADVEVGKEYELVITT---YAGLY-------------RYRVGDILRVTGFHNSAPQFKFIRRKNVL  437 (597)
T ss_pred             cCCcccCCCCcEecHHHcCCCCeEEEEEEc---cccee-------------EeecCCEEEEeeccCCCcEEEEEccCCcc
Confidence            11 1       0   112234556777765   33333             299999999853    3368999999999


Q ss_pred             EEcCCceeechHHHHHHHhc
Q 005867          519 IKISQGEYVALEYLENVYCV  538 (673)
Q Consensus       519 i~~~~G~~v~~~~iE~~l~~  538 (673)
                      +.+ .|+++.-.+++.++.+
T Consensus       438 ls~-~GEKl~e~~v~~Av~~  456 (597)
T PLN02249        438 LSI-ESDKTDEADLQKAVEN  456 (597)
T ss_pred             eec-ccccCCHHHHHHHHHH
Confidence            998 7999999999998865

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=96.79  E-value=0.0063  Score=50.43  Aligned_cols=88  Identities=20%  Similarity=0.044  Sum_probs=51.2

Q ss_pred             ceeechHHHHHHHhcCcCcc-eEEEEe--cCCCCeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHH
Q 005867          524 GEYVALEYLENVYCVAPIIE-DIWVYG--DSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA  600 (673)
Q Consensus       524 G~~v~~~~iE~~l~~~p~V~-~~~v~~--~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  600 (673)
                      |.+|+|.+||++|.++|++. +..++-  ..+.+.+...|+..++..          ++.   -...++.+.+.+.|++.
T Consensus         1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~----------~~~---~~~~~l~~~i~~~lk~~   67 (96)
T PF14535_consen    1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFS----------DDA---EDLEALAERIAERLKER   67 (96)
T ss_dssp             TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCC----------TTH---HHHHHHHHHHHHHHHHH
T ss_pred             CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccC----------cch---HHHHHHHHHHHHHHHhh
Confidence            78999999999999999998 444433  223357778888887531          000   02245566666666666


Q ss_pred             HHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccch
Q 005867          601 AERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKR  650 (673)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R  650 (673)
                      +.-                    .| .+.+++    .+++|++ .||..|
T Consensus        68 lgv--------------------~~-~V~lv~----~gtLpr~-~~K~~R   91 (96)
T PF14535_consen   68 LGV--------------------RP-EVELVP----PGTLPRS-EGKAKR   91 (96)
T ss_dssp             HSS---------------------E-EEEEE-----TT-S----SSSS-S
T ss_pred             cCc--------------------eE-EEEEEC----CCCccCC-CCcceE
Confidence            542                    12 666663    3677897 678776

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=92.52  E-value=0.64  Score=49.22  Aligned_cols=90  Identities=9%  Similarity=-0.003  Sum_probs=75.0

Q ss_pred             ceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--HhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceE
Q 005867           74 YVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDF  151 (673)
Q Consensus        74 ~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~--~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~  151 (673)
                      ..-+|+.+....+..+|+.|...|..+||+|.+...-+  ..-....+|+.++|++++|+.+. ..+....++++.++.+
T Consensus       107 ~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tv  185 (438)
T COG1541         107 VFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTV  185 (438)
T ss_pred             eeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcE
Confidence            34689999999999999999999999999998888733  22266788999999999999883 4667788999999999


Q ss_pred             EEEcchhhhhhhc
Q 005867          152 VFVQDKKVKELLS  164 (673)
Q Consensus       152 vi~~~~~~~~~~~  164 (673)
                      |.+.....-.+.+
T Consensus       186 I~~tps~~l~lae  198 (438)
T COG1541         186 IAATPSYLLYLAE  198 (438)
T ss_pred             EEEChHHHHHHHH
Confidence            9999987665533

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	673
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		1e-21
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		3e-20
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		7e-20
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		8e-18
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		1e-17
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		1e-15
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-15
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-15
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-15
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		3e-15
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		3e-15
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		1e-14
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		1e-14
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		1e-14
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		2e-14
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		2e-13
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		2e-13
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		3e-13
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		3e-13
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		4e-13
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		2e-12
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		9e-12
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		1e-11
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		3e-11
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		3e-11
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		1e-09
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		2e-09
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		8e-09
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		3e-08
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		7e-07
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		2e-06
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		3e-06
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		4e-06
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		1e-05
4gr5_A	570	Crystal Structure Of Slgn1deltaasub In Complex With		3e-05
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		3e-05
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		2e-04
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		4e-04
4gr4_A	469	Crystal Structure Of Slgn1deltaasub Length = 469		8e-04

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 149/569 (26%), Positives = 227/569 (39%), Gaps = 124/569 (21%)
Query: 32  NGFPS--VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG-KFGPYVWKTYKEVYEEVLQ 88
           N FPS  +D +LN  WD    +        + G +  V     G     TY EVY+   +
Sbjct: 7   NAFPSTMMDEELNL-WDFLERAAA------LFGRKEVVSRLHTGEVHRTTYAEVYQRARR 59
Query: 89  IVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAE 148
           ++  LRA G   G RV   G N  + +EA  A   +  +       L P  + +IL+HAE
Sbjct: 60  LMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAE 119
Query: 149 IDFVFVQDKKV---KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH 205
            D V + D  +    E +  + ++ Q   VM       A +  +A +             
Sbjct: 120 -DKVLLFDPNLLPLVEAIRGELKTVQHFVVM----DEKAPEGYLAYEEA----------- 163
Query: 206 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI------ATFVSGVDLFLDQF 259
           LG+  +   +P +    C + YT+GT+G PKGVV +H  +      A+ V G  L     
Sbjct: 164 LGEEADPVRVPER--AACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTAL----- 216
Query: 260 EDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDD---LMEL----K 312
               +  DV L  +P+ H+       +     A++      L   R D   L+EL     
Sbjct: 217 ----SEKDVVLPVVPMFHV-----NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEG 267
Query: 313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372
            T  AGVP V+  + + ++     L+ LRR                              
Sbjct: 268 VTFTAGVPTVWLALADYLESTGHRLKTLRR------------------------------ 297
Query: 373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF---- 428
                         LV+ G A   + +  F R+     + QGYGLTET       F    
Sbjct: 298 --------------LVVGGSAAPRSLIARFERMGVE--VRQGYGLTETSPVVVQNFVKSH 341
Query: 429 ------PDEMCMVGTAG-PVSVYSELRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYY 480
                  +++ +    G P+ +   +RL    E G   P D    GEV ++G  +  GYY
Sbjct: 342 LESLSEEEKLTLKAKTGLPIPL---VRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYY 398
Query: 481 KNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVA 539
            N + TR ++  DG+F TGDI      G V+I DR K+LIK S GE+++   LEN     
Sbjct: 399 GNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIK-SGGEWISSVDLENALMGH 457
Query: 540 PIIEDIWVYG---DSLKSMLVAVVVPCEE 565
           P +++  V        +   +AVVVP  E
Sbjct: 458 PKVKEAAVVAIPHPKWQERPLAVVVPRGE 486

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 138/333 (41%), Gaps = 60/333 (18%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           ++YTSGT+G PKG V+    +AT +   D   D ++   T +DV +  LPL H+   V+ 
Sbjct: 160 VVYTSGTTGPPKGAVIPRRALATTL---DALADAWQ--WTGEDVLVQGLPLFHVHGLVLG 214
Query: 285 EYF-FRRGASVGYY-----HGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
                RRG SV +       G    L D       T+L GVP ++ +I E +    E   
Sbjct: 215 ILGPLRRGGSVRHLGRFSTEGAARELNDGA-----TMLFGVPTMYHRIAETLPADPE--- 266
Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
                                        LA  LA            RL++SG A L   
Sbjct: 267 -----------------------------LAKALAG----------ARLLVSGSAALPVH 287
Query: 399 VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458
             E +       +++ YG+TET   T+V   D     GT G      ELRL E      +
Sbjct: 288 DHERIAAATGRRVIERYGMTETLMNTSVRA-DGEPRAGTVGVPLPGVELRLVEEDGTPIA 346
Query: 459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKN 517
            LD    GE+ VRG  LF+ Y   PD T  +   DG+F TGD+    P+G V+I+ RK  
Sbjct: 347 ALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKAT 406
Query: 518 LIKISQGEYVALEYLENVYCVAPIIEDIWVYGD 550
            +  S G  +    +EN     P + +  V G+
Sbjct: 407 DLIKSGGYKIGAGEIENALLEHPEVREAAVTGE 439

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 146/334 (43%), Gaps = 72/334 (21%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD-QFEDKMTVDDVYLSFLPLAHILDRVI 283
           IMYTSGT+G PKGVV THE++ +  S     +D ++ D++      L  LP+ H+     
Sbjct: 175 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRL------LLPLPMFHVAALTT 228
Query: 284 EEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342
             +   RG + +     D   +   ++E +  +   VP +   +                
Sbjct: 229 VIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM---------------- 272
Query: 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEF 402
                               R+    A+L A            R  I+GGAP+    E  
Sbjct: 273 --------------------RQVPEFAELDA---------PDFRYFITGGAPMP---EAL 300
Query: 403 LRVTCCAFL--VQGYGLTETCGPTTVCFP-DEMCMVGTAGPVSVYSELRLEE----VPEM 455
           +++     +  VQGY LTE+CG  T+    D +   G+AG  ++++++ +      + E 
Sbjct: 301 IKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREH 360
Query: 456 GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK 515
           G         GEV ++   L   Y+  P+ TR++  +GWF TGDIG+I   G + I DR 
Sbjct: 361 GE--------GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRL 412
Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           K++I IS GE V    +E+V    P + ++ V G
Sbjct: 413 KDMI-ISGGENVYPAEIESVIIGVPGVSEVAVIG 445

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 127/500 (25%), Positives = 200/500 (40%), Gaps = 81/500 (16%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E +E  +++  A++  G     R+ +   N  Q+   +     + +   P  D    
Sbjct: 57  TYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNE 116
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA--QRLRVMVCFTSLTAEQKEMAVQTGI 195
             +   ++ ++   VFV  K ++++L+   +    Q++ +M   T     Q      T  
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 176
Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIAT-FVS 250
            P  ++E+  +          P+ F+    I  IM +SG++G PKGV L H  +A  F  
Sbjct: 177 LPPGFNEYDFV----------PESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSH 226
Query: 251 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLME 310
             D     F +++  D   LS +P           + F    ++GY              
Sbjct: 227 ARDPI---FGNQIAPDTAILSVVPF---------HHGFGMFTTLGY-------------- 260
Query: 311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD 370
               L++G   V                 L  R  + L+   L      YK + A  +  
Sbjct: 261 ----LISGFRVV-----------------LMYRFEEELFLRSL----QDYKIQSALLVPT 295
Query: 371 LLAFRKVKARLG----GRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTT 425
           L +F      +       L  + SGGAPLS EV E   +      + QGYGLTET     
Sbjct: 296 LFSFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL 355
Query: 426 VCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
           +  P      G  G V  + E ++ ++ + G + L     GE+ VRG  + SGY  NP+ 
Sbjct: 356 IT-PKGDDKPGAVGKVVPFFEAKVVDL-DTGKT-LGVNQRGELSVRGPMIMSGYVNNPEA 412
Query: 486 TRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
           T   I  DGW H+GDI     +    I+DR K+LIK  +G  VA   LE++    P I D
Sbjct: 413 TNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGCQVAPAELESILLQHPNIFD 471
Query: 545 IWVYG---DSLKSMLVAVVV 561
             V G   D    +  AVVV
Sbjct: 472 AGVAGLPDDDAGELPAAVVV 491

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 154/345 (44%), Gaps = 71/345 (20%)
Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVS------GVDLFLDQFEDKMTVDDVYLS 271
            P ++  + Y+SGT+G PKGV+LTH+ + T V+        +L+          DDV L 
Sbjct: 223 SPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHS-------DDVILC 275
Query: 272 FLPLAHILD-RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
            LP+ HI     I     R GA++      ++N L + +   K T+   VP +   I + 
Sbjct: 276 VLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKS 335
Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
            +                  KY L+                              +R+V 
Sbjct: 336 SETE----------------KYDLS-----------------------------SIRVVK 350
Query: 390 SGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPT---TVCFPDEMCMV--GTAGPVSV 443
           SG APL  E+E+ +      A L QGYG+TE  GP    ++ F  E   V  G  G V  
Sbjct: 351 SGAAPLGKELEDAVNAKFPNAKLGQGYGMTE-AGPVLAMSLGFAKEPFPVKSGACGTVVR 409
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ 502
            +E+++ + P+ G S   + P GE+C+RG  +  GY  NP  T E+I  DGW HTGDIG 
Sbjct: 410 NAEMKIVD-PDTGDSLSRNQP-GEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGL 467
Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 547
           I  +  + I+DR K LIK  +G  VA   LE +    P I D+ V
Sbjct: 468 IDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAV 511

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 141/334 (42%), Gaps = 63/334 (18%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
           ++  I+YTSGT+G  KG  L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 280 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSXIFLPKFDPDKILD--LXARATVLXGVPTFYTR------------ 255
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                                            LL   ++     G  RL ISG APL  
Sbjct: 256 ---------------------------------LLQSPRLTKETTGHXRLFISGSAPLLA 282
Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           +            +++ YG TET   T+  + D   + G  GP       R+ + PE G 
Sbjct: 283 DTHREWSAKTGHAVLERYGXTETNXNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGK 340
Query: 458 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDRK 515
             P  D   G + V+G  +F GY++ P+ T+    D G+F TGD+G+I   G V I+ R 
Sbjct: 341 ELPRGD--IGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRG 398
Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           K+L+ I+ G  V  + +E+     P + +  V G
Sbjct: 399 KDLV-ITGGFNVYPKEIESEIDAXPGVVESAVIG 431

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 141/350 (40%), Gaps = 58/350 (16%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            +  IM +SG++G PKGV LTHE I T F    D     + ++++     L+ +P  H  
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI---YGNQVSPGTAVLTVVPFHHGF 249
Query: 280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
                  +   G  V      D       L + K T +  VP +F  +++          
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS--------- 300
Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
                  + L KY L+                              L  + SGGAPLS E
Sbjct: 301 -------ELLNKYDLS-----------------------------NLVEIASGGAPLSKE 324
Query: 399 V-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           V E   R      + QGYGLTET     +  P+     G +G V    + ++ ++     
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK-- 381
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKK 516
             L     GEVCV+G  L  GY  NP+ T+E I  +GW HTGDIG         I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 517 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLVAVVVPCE 564
           +LIK  +G  V    LE+V    P I D  V G  D +   L   VV  E
Sbjct: 442 SLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLE 490

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 141/350 (40%), Gaps = 58/350 (16%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            +  IM +SG++G PKGV LTHE I T F    D     + ++++     L+ +P  H  
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI---YGNQVSPGTAVLTVVPFHHGF 249
Query: 280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
                  +   G  V      D       L + K T +  VP +F  +++          
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS--------- 300
Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
                  + L KY L+                              L  + SGGAPLS E
Sbjct: 301 -------ELLNKYDLS-----------------------------NLVEIASGGAPLSKE 324
Query: 399 V-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           V E   R      + QGYGLTET     +  P+     G +G V    + ++ ++     
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK-- 381
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKK 516
             L     GEVCV+G  L  GY  NP+ T+E I  +GW HTGDIG         I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 517 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLVAVVVPCE 564
           +LIK  +G  V    LE+V    P I D  V G  D +   L   VV  E
Sbjct: 442 SLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLE 490

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 141/350 (40%), Gaps = 58/350 (16%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            +  IM +SG++G PKGV LTHE I T F    D     + ++++     L+ +P  H  
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI---YGNQVSPGTAVLTVVPFHHGF 249
Query: 280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
                  +   G  V      D       L + K T +  VP +F  +++          
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILNKS--------- 300
Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
                  + L KY L+                              L  + SGGAPLS E
Sbjct: 301 -------ELLNKYDLS-----------------------------NLVEIASGGAPLSKE 324
Query: 399 V-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           V E   R      + QGYGLTET     +  P+     G +G V    + ++ ++     
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK-- 381
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKK 516
             L     GEVCV+G  L  GY  NP+ T+E I  +GW HTGDIG         I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 517 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLVAVVVPCE 564
           +LIK  +G  V    LE+V    P I D  V G  D +   L   VV  E
Sbjct: 442 SLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLE 490

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 94/178 (52%), Gaps = 23/178 (12%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMCMV-------- 435
           LR++ SGGAPL  E+E+ +R     A L QGYG+TE  GP        MC+         
Sbjct: 299 LRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTE-AGPVLA-----MCLAFAKEPFDI 352
Query: 436 --GTAGPVSVYSELRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I 491
             G  G V   +E+++ + PE G S P + P  GE+C+RG  +  GY  +P+ T  +I  
Sbjct: 353 KPGACGTVVRNAEMKIVD-PETGASLPRNQP--GEICIRGDQIMKGYLNDPEATSRTIDK 409
Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           +GW HTGDIG I  +  + I+DR K LIK  +G  VA   LE +    P I D  V G
Sbjct: 410 EGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVG 466

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 126/298 (42%), Gaps = 71/298 (23%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD-QFEDKMTVDDVYLSFLPLAHILDRVI 283
           IMYTSGT+G PKGVV THE++ +  S     +D ++ D++      L  LP+ H+     
Sbjct: 161 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRL------LLPLPMFHVAALTT 214
Query: 284 EEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342
             +   RG + +     D   +   ++E +  +   VP +   +                
Sbjct: 215 VIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM---------------- 258
Query: 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEF 402
                               R+    A+L A            R  I+GGAP+    E  
Sbjct: 259 --------------------RQVPEFAELDA---------PDFRYFITGGAPMP---EAL 286
Query: 403 LRVTCCAFL--VQGYGLTETCGPTTVCFP-DEMCMVGTAGPVSVYSELRLEE----VPEM 455
           +++     +  VQGY LTE+CG  T+    D +   G+AG  ++++++ +      + E 
Sbjct: 287 IKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREH 346
Query: 456 GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID 513
           G         GEV ++   L   Y+  P+ TR++  +GWF TGDIG+I   G + I D
Sbjct: 347 GE--------GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKD 396

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/183 (37%), Positives = 91/183 (49%), Gaps = 9/183 (4%)
Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            L  + SGGAPLS EV E   +      + QGYGLTET     +  P+     G  G V 
Sbjct: 308 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVV 366
Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG 501
            + E ++ ++ + G + L     GE+CVRG  + SGY  NP+ T   I  DGW H+GDI 
Sbjct: 367 PFFEAKVVDL-DTGKT-LGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIA 424
Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVA 558
               +    I+DR K+LIK  +G  VA   LE++    P I D  V G   D    +  A
Sbjct: 425 YWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAA 483
Query: 559 VVV 561
           VVV
Sbjct: 484 VVV 486

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/183 (37%), Positives = 91/183 (49%), Gaps = 9/183 (4%)
Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            L  + SGGAPLS EV E   +      + QGYGLTET     +  P+     G  G V 
Sbjct: 313 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVV 371
Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG 501
            + E ++ ++ + G + L     GE+CVRG  + SGY  NP+ T   I  DGW H+GDI 
Sbjct: 372 PFFEAKVVDL-DTGKT-LGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIA 429
Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVA 558
               +    I+DR K+LIK  +G  VA   LE++    P I D  V G   D    +  A
Sbjct: 430 YWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAA 488
Query: 559 VVV 561
           VVV
Sbjct: 489 VVV 491

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/183 (37%), Positives = 91/183 (49%), Gaps = 9/183 (4%)
Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            L  + SGGAPLS EV E   +      + QGYGLTET     +  P+     G  G V 
Sbjct: 308 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVV 366
Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG 501
            + E ++ ++ + G + L     GE+CVRG  + SGY  NP+ T   I  DGW H+GDI 
Sbjct: 367 PFFEAKVVDL-DTGKT-LGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIA 424
Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVA 558
               +    I+DR K+LIK  +G  VA   LE++    P I D  V G   D    +  A
Sbjct: 425 YWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAA 483
Query: 559 VVV 561
           VVV
Sbjct: 484 VVV 486

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 115/478 (24%), Positives = 176/478 (36%), Gaps = 84/478 (17%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+++      ++ S L   G   G RV I   NC + +E + A   +  I +P       
Sbjct: 33  THRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLP------- 85
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             VN+ L+  EI FV         +   D R      V     SL   +K  A+  G  P
Sbjct: 86  --VNYRLNADEIAFVLGDGAPSVVVAGTDYRDI----VAGVLPSLGGVKKAYAIGDGSGP 139
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
           ++   F  L              +   I++T+   G P+G +++   +    S +   +D
Sbjct: 140 FA--PFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSL---VD 194
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRG-ASVGYYHGDLNALRDDLMELKPTLL 316
            +  ++T  DV L  LPL H+    +     + G ASV     D      D+   K T++
Sbjct: 195 AW--RLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVM 252
Query: 317 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRK 376
           A                  E  P+   I D                 +A+P A L + R 
Sbjct: 253 A------------------EFAPMLGNILD-----------------QAAP-AQLASLRA 276
Query: 377 VKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMV 435
           V              G      +E F      A     +G +ET G +T   + D     
Sbjct: 277 VT-------------GLDTPETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR---- 319
Query: 436 GTAGPVSVYSEL--RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG 493
               P S    L  R   V +    PL     GE+ +RG T+F GY+ N   T+ +  +G
Sbjct: 320 ----PKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNG 375
Query: 494 WFHTGDIGQILPNGVVKIIDR--KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           W HTGD+G+   +G +    R  +K LIK + GE V    +E      P I D  V G
Sbjct: 376 WHHTGDMGRFDADGYLFYAGRAPEKELIK-TGGENVYPAEVEGALKQHPAIADAVVIG 432

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 88/185 (47%), Gaps = 7/185 (3%)
Query: 385 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443
           L  + SGGAPL+ EV E   +      + QGYGLTET     +         G  G V  
Sbjct: 343 LHEIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPRGRDDKPGACGKVVP 402
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ 502
           +   ++ ++ + G + L     GE+CV+G  +  GY  NP+ T   I  DGW H+GDI  
Sbjct: 403 FFSAKIVDL-DTGKT-LGVNQRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAY 460
Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLVAVV 560
              +G   I+DR K+LIK  +G  V    LE++    P I D  V G  D     L A V
Sbjct: 461 YDKDGYFFIVDRLKSLIKY-KGYQVPPAELESILLQHPFIFDAGVAGIPDPDAGELPAAV 519
Query: 561 VPCEE 565
           V  EE
Sbjct: 520 VVLEE 524

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 120/510 (23%), Positives = 187/510 (36%), Gaps = 100/510 (19%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+ EE  +I   L+  GA  G  V +Y     + V  +          +P+   L  
Sbjct: 491 SYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPE 550
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             ++++L           D     LL+      Q   +    T+L  + +    +    P
Sbjct: 551 DRISYML----------ADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDP 600
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
            +              I P  P     IMYTSGT+G PKG + TH  I   V  VD    
Sbjct: 601 AT-------------AIDPNDP---AYIMYTSGTTGKPKGNITTHANIQGLVKHVDYM-- 642
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 317
            F D+    D +LS           +  Y F    +  +Y   LNA R  + + + TLL 
Sbjct: 643 AFSDQ----DTFLS-----------VSNYAFD-AFTFDFYASMLNAARLIIAD-EHTLLD 685
Query: 318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKV 377
                 E++ + I +    +      +F+ L      WM                     
Sbjct: 686 T-----ERLTDLILQENVNVMFATTALFNLLTDAGEDWMK-------------------- 720
Query: 378 KARLGGRLRLVISGGAPLST-EVEEFLRVTCCAFLVQGYGLTETCGPTTVC----FPDEM 432
                  LR ++ GG   S   V + LR+     L+  YG TE     T       PD +
Sbjct: 721 ------GLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSI 774
Query: 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID 492
             +    P+S  S   L E  ++   P      GE+C+ G  +  GY    DLT+E  I+
Sbjct: 775 SSLPIGKPISNASVYILNEQSQL--QPFG--AVGELCISGMGVSKGYVNRADLTKEKFIE 830
Query: 493 GWF-------HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDI 545
             F        TGD+ + LP+G ++   R  + +KI +G  + LE +E      P ++D 
Sbjct: 831 NPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDA 889
Query: 546 WVYGD-------SLKSMLVAVVVPCEEDTK 568
            V  D       S+ + LV       ED K
Sbjct: 890 VVVADRHESGDASINAYLVNRTQLSAEDVK 919

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 127/304 (41%), Gaps = 62/304 (20%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
           ++  I+YTSGT+G   G +L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 280 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTR------------ 255
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                                            LL   ++     G +RL ISG APL  
Sbjct: 256 ---------------------------------LLQSPRLTXETTGHMRLFISGSAPLLA 282
Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           +            +++ YG+TET   T+  + D   + G  GP       R+ + PE G 
Sbjct: 283 DTHREWSAXTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGX 340
Query: 458 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLT-RESIIDGWFHTGDIGQILPNGVVKIIDRK 515
             P  D   G + V G  +F GY++ P+ T  E   DG+F TGD+G I   G V I+ R 
Sbjct: 341 ELPRGD--IGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRG 398
Query: 516 KNLI 519
            +L+
Sbjct: 399 XDLV 402

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 127/304 (41%), Gaps = 62/304 (20%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
           ++  I+YTSGT+G   G +L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 280 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTR------------ 255
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                                            LL   ++     G +RL ISG APL  
Sbjct: 256 ---------------------------------LLQSPRLTXETTGHMRLFISGSAPLLA 282
Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           +            +++ YG+TET   T+  + D   + G  GP       R+ + PE G 
Sbjct: 283 DTHREWSAXTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGX 340
Query: 458 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLT-RESIIDGWFHTGDIGQILPNGVVKIIDRK 515
             P  D   G + V G  +F GY++ P+ T  E   DG+F TGD+G I   G V I+ R 
Sbjct: 341 ELPRGD--IGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRG 398
Query: 516 KNLI 519
            +L+
Sbjct: 399 XDLV 402

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 127/304 (41%), Gaps = 62/304 (20%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
           ++  I+YTSGT+G   G +L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 280 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTR------------ 255
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                                            LL   ++     G +RL ISG APL  
Sbjct: 256 ---------------------------------LLQSPRLTXETTGHMRLFISGSAPLLA 282
Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           +            +++ YG+TET   T+  + D   + G  GP       R+ + PE G 
Sbjct: 283 DTHREWSAXTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGX 340
Query: 458 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLT-RESIIDGWFHTGDIGQILPNGVVKIIDRK 515
             P  D   G + V G  +F GY++ P+ T  E   DG+F TGD+G I   G V I+ R 
Sbjct: 341 ELPRGD--IGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRG 398
Query: 516 KNLI 519
            +L+
Sbjct: 399 XDLV 402

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 109/475 (22%), Positives = 172/475 (36%), Gaps = 74/475 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+     + F        E        
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V GYG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNGYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 68.9 bits (167), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 109/475 (22%), Positives = 175/475 (36%), Gaps = 74/475 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+    ++    L        V+ G +
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR----IIFLGDL--------VRDG-E 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V  YG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNAYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 108/475 (22%), Positives = 172/475 (36%), Gaps = 74/475 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+     + F        E        
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVIEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V  YG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P+ T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPEATAEKLQDGW 380
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 108/475 (22%), Positives = 171/475 (36%), Gaps = 74/475 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+     + F        E        
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V  YG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 108/475 (22%), Positives = 171/475 (36%), Gaps = 74/475 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+     + F        E        
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V  YG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVPDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 14/163 (8%)
Query: 384 RLRLVISGGAPLS-TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAGPV 441
            L+ ++ GGA LS T +E  L+     +    +G+TETC       P+ +     T G  
Sbjct: 275 NLQKILLGGAKLSATMIETALQYNLPIY--NSFGMTETCSQFLTATPEMLHARPDTVGMP 332
Query: 442 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG 501
           S   +++++   + G+        GE+ ++G  + +GY    DLT  +  +G+F+TGDI 
Sbjct: 333 SANVDVKIKNPNKEGH--------GELMIKGANVMNGYLYPTDLTG-TFENGYFNTGDIA 383
Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
           +I   G V I DR+K+LI IS GE +    +E V    P I D
Sbjct: 384 EIDHEGYVMIYDRRKDLI-ISGGENIYPYQIETVAKQFPGISD 425

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 110/477 (23%), Positives = 172/477 (36%), Gaps = 78/477 (16%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +         P
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAV---------P 81
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA---VQTG 194
             +N  L  AE+  +  + +    +++   + A  +     F S +  +       V+ G
Sbjct: 82  ALLNPRLKSAELAELIKRGEXTAAVIAVGRQVADAI-----FQSGSGARIIFLGDLVRDG 136
Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
            +PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    L
Sbjct: 137 -EPYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----L 183
Query: 255 FLD-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKP 313
           F   Q   +    +V L   PL H+               VG++   + AL  D      
Sbjct: 184 FXSTQVGLRHGRHNVVLGLXPLYHV---------------VGFFAVLVAALALD------ 222
Query: 314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA 373
                          G    +EE RP+     DAL   +   +   +            A
Sbjct: 223 ---------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAA 262
Query: 374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433
                +     LR V   GA     V E +        V  YG TE         P    
Sbjct: 263 AHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKVNIYGTTEAXNSLYXRQPK--- 319
Query: 434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIID 492
             GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + D
Sbjct: 320 -TGTEXAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQD 378
Query: 493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           GW+ T D+    P G V+I+ R  + I IS GE +    +E V   AP + ++ V G
Sbjct: 379 GWYRTSDVAVWTPEGTVRILGRVDDXI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 6/162 (3%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSV 443
           L+++  GGA  S E    ++      L Q +G+ E     T     E  +V T G P+S 
Sbjct: 300 LQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSP 359
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQ 502
           Y E R+ +  +    P +    G +  RG     GYYK  +    S   DG++ TGDI +
Sbjct: 360 YDESRVWDDHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVR 416
Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
           +  +G + +  R K+ I    GE VA E +EN     P + D
Sbjct: 417 LTRDGYIVVEGRAKDQIN-RGGEKVAAEEVENHLLAHPAVHD 457

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 6/162 (3%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSV 443
           L+++  GGA  S E    ++      L Q +G  E     T     E  +V T G P S 
Sbjct: 300 LQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGXAEGLVNYTRLDDPEEIIVNTQGKPXSP 359
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQ 502
           Y E R+ +  +    P +    G +  RG     GYYK  +    S   DG++ TGDI +
Sbjct: 360 YDESRVWDDHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVR 416
Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
           +  +G + +  R K+ I    GE VA E +EN     P + D
Sbjct: 417 LTRDGYIVVEGRAKDQIN-RGGEKVAAEEVENHLLAHPAVHD 457

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Query: 385 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVS 442
           L+  +  G PL+ EV   FL  T    L++G+G TET   T   FP      G+ G P  
Sbjct: 343 LKYAVVAGEPLNPEVFNRFLEFTGIK-LMEGFGQTETV-VTIATFPWMEPKPGSIGKPTP 400
Query: 443 VYS------ELRLEEVPEMG---YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG 493
            Y       + RL EV E G    + ++  P G        LF  Y K+P+ T E+  DG
Sbjct: 401 GYKIELMDRDGRLCEVGEEGEIVINTMEGKPVG--------LFVHYGKDPERTEETWHDG 452
Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           ++HTGD+  +  +G +  + R  ++IK S
Sbjct: 453 YYHTGDMAWMDEDGYLWFVGRADDIIKTS 481

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 94/473 (19%), Positives = 180/473 (38%), Gaps = 80/473 (16%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+++ +    I + L+A GA+PG RV +  A     ++A   C     I VP+Y    P
Sbjct: 42  TYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIY----P 97
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
            A   +LD A             + +  + +    L +       TA++     +    P
Sbjct: 98  PAQEKLLDKA-------------QRIVTNSKPVIVLXIADHIKKFTADELNTNPKFLKIP 144
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
               E + L + +  +    +  +I  + YTSG++  PKGV ++H  +   +  ++    
Sbjct: 145 AIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHNL---LDNLNKIFT 201
Query: 258 QFEDKMTVDDVYLSFLPLAH-------ILDRVIEEYFFRRGASVGYYHGDLNALRDDLME 310
            F      + +  S+LP  H       IL  +         +   +    L+ L+  + +
Sbjct: 202 SFH--XNDETIIFSWLPPHHDXGLIGCILTPIYGGIQAIXXSPFSFLQNPLSWLK-HITK 258
Query: 311 LKPTLLAG--------VPRVFEKIHEGIK-----KALEELRPLRRRIFDALYKYKLAWMN 357
            K T+           V R+ E+  EG+       A     P+R    +  Y+   A+  
Sbjct: 259 YKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETXEHFYQ---AFKE 315
Query: 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGL 417
            G+++    P   L               L+++GG P S+    +  +T      Q + +
Sbjct: 316 FGFRKEAFYPCYGL-----------AEATLLVTGGTPGSS----YKTLTLAKEQFQDHRV 360
Query: 418 TETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 477
                 +    P    +V +  P+    E+++ +   +   P D    GE+ V+  ++  
Sbjct: 361 HFADDNS----PGSYKLVSSGNPI---QEVKIIDPDTL--IPCDFDQVGEIWVQSNSVAK 411
Query: 478 GYYKNPDLTRESIIDG---------WFHTGDIGQILPNGVVKIIDRKKNLIKI 521
           GY+  P+ TR +             +  TGD+G +  N +  +  R K+LI I
Sbjct: 412 GYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENELY-VTGRIKDLIII 463

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 23/182 (12%)
Query: 385 LRLVISGGAP----LSTEVEEFLRVTCCAFLVQGYGLTE-TCGPTTVCFPDEMCMVGTAG 439
           L+L+  GGA     L+ +V E L       L Q +G+ E     T +   DE        
Sbjct: 309 LKLLQVGGASFPESLARQVPEVLNCK----LQQVFGMAEGLVNYTRLDDSDEQIFTTQGR 364
Query: 440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
           P+S   E++   + +  Y  + +   G +  RG   F GYY++P+   +    D ++++G
Sbjct: 365 PISSDDEIK---IVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSG 421
Query: 499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVA 558
           D+ Q  P+G ++++ R K+ I    GE +A E +E +  + P         + + + LVA
Sbjct: 422 DLVQRTPDGNLRVVGRIKDQIN-RGGEKIASEEIEKLILLHP---------EVMHAALVA 471
Query: 559 VV 560
           +V
Sbjct: 472 IV 473

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 6/160 (3%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSV 443
           L+L+  GGA LS  +   +       L Q +G+ E     T        ++ T G P+  
Sbjct: 304 LKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCP 363
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ 502
             E+    V +   +PL     G +  RG   F GYYK+P     +   +G++ +GD+  
Sbjct: 364 DDEVW---VADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLIS 420
Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
           I P G + +  R+K+ I    GE +A E +EN+    P +
Sbjct: 421 IDPEGYITVQGREKDQIN-RGGEKIAAEEIENLLLRHPAV 459

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 27/140 (19%)
Query: 412 VQGYGLTET--CGPTTVCFPDEMCM-VGTAGPVS------VYSELRLEEVPEMGYSPLDD 462
           +  YG TET  C  T V   + +   V    P+       V   L+L+ V E        
Sbjct: 320 INAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGE-------- 371
Query: 463 PPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF-------HTGDIGQILPNGVVKIIDRK 515
              GE+C+ G+ L  GY+K P+LT +  +D  F        TGD  + L +G ++ + R 
Sbjct: 372 --AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRI 429
Query: 516 KNLIKISQGEYVALEYLENV 535
            N +KI +G  V LE +E++
Sbjct: 430 DNQVKI-RGHRVELEEVESI 448

>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 10/147 (6%)
Query: 385 LRLVISGGAPLST-EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443
           +R  I+GG P S   V +  R      L  GYG  E+ G TT        + GTA P+ V
Sbjct: 328 VRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGV 387
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---------DGW 494
               +   V +    P  +   GE+ V G  L  GY   P LT E  +         +  
Sbjct: 388 PLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERM 447
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKI 521
           + TGD+ +   +GV++ + R  + +KI
Sbjct: 448 YRTGDLARRRADGVLEYVGRADDQVKI 474

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 119/311 (38%), Gaps = 57/311 (18%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           +I   +Y+SG++G PKG V TH   A      +L+       +  +DV  S   L     
Sbjct: 184 DIAFWLYSSGSTGKPKGTVHTH---ANLYWTAELYAKPILG-IAENDVVFSAAKL----- 234
Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
                 FF  G   G            LM  +PT             + I   L E RP 
Sbjct: 235 ------FFAYGLGNGLTFPLSVGATAILMAERPTA------------DAIFARLVEHRPT 276
Query: 341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 400
                  LY                   A++L    + AR    +R+  S G  L  E+ 
Sbjct: 277 VFYGVPTLY-------------------ANMLVSPNLPARADVAIRICTSAGEALPREIG 317
Query: 401 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV--GTAG-PVSVYSELRLEEVPEMGY 457
           E         ++ G G TE      +   +    V  GT G PV  Y E+ L +  E G+
Sbjct: 318 ERFTAHFGCEILDGIGSTEML---HIFLSNRAGAVEYGTTGRPVPGY-EIELRD--EAGH 371
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 517
           + + D   G++ ++G +    Y+ N + +R + +  W  +GD    LPNG      R  +
Sbjct: 372 A-VPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDD 430
Query: 518 LIKISQGEYVA 528
           ++K+S G+YV+
Sbjct: 431 MLKVS-GQYVS 440

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 14/145 (9%)
Query: 413 QGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR---LEEVPEMGYSPLDDPPCGEVC 469
           Q +G TE C   T   P  +    T G      EL+   LE+  E+G         GE+ 
Sbjct: 333 QIWGXTEACPXVTTNPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGE-----SGEIV 387
Query: 470 VRGKTLFSGYYKNPDLTRE-----SIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG 524
           +RG  +F GY+K     +E          +F TGD+G I   G +   DR K +IK  +G
Sbjct: 388 IRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKY-KG 446
Query: 525 EYVALEYLENVYCVAPIIEDIWVYG 549
             +A   LE +      + D+ V G
Sbjct: 447 YTIAPFELEALLXKHEAVXDVAVIG 471

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 451 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVK 510
           E+      P+ +   G +C+ G +L SGY+ +     E    GW  TGD+G +L +G + 
Sbjct: 396 EIRNEAGXPVAERVVGHICISGPSLXSGYFGDQVSQDEIAATGWLDTGDLGYLL-DGYLY 454
Query: 511 IIDRKKNLIKI 521
           +  R K+LI I
Sbjct: 455 VTGRIKDLIII 465

>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 10/140 (7%)
Query: 385 LRLVISGGAPLST-EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443
           +R  I+GG P S   V +  R      L  GYG  E+ G TT        + GTA P+ V
Sbjct: 328 VRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGV 387
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---------DGW 494
               +   V +    P  +   GE+ V G  L  GY   P LT E  +         +  
Sbjct: 388 PLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERM 447
Query: 495 FHTGDIGQILPNGVVKIIDR 514
           + TGD+ +   +GV++ + R
Sbjct: 448 YRTGDLARRRADGVLEYVGR 467

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	673
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	6e-70
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	3e-67
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	7e-66
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	6e-65
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	4e-64
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	1e-61
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	8e-61
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	3e-59
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	4e-59
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	8e-58
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	1e-57
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	7e-56
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	2e-54
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	1e-53
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	5e-52
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	1e-45
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	1e-32
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	1e-28
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	6e-28
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	2e-27
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	9e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	1e-14
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	2e-10
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	7e-11
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	2e-09
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	2e-08
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	9e-08
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	2e-07
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	4e-07
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	9e-07
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	4e-04

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  235 bits (602), Expect = 6e-70
 Identities = 106/507 (20%), Positives = 169/507 (33%), Gaps = 100/507 (19%)

Query: 38  DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG 97
           D  +     +        P                     TY ++     +    L A G
Sbjct: 12  DDKMKNIGWMLRQRATVSPR------LQAYVEPSTDVRM-TYAQMNALANRCADVLTALG 64

Query: 98  AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157
              G RV +   N  ++         L  + VP+   L    V+FIL  +    V     
Sbjct: 65  IAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGA- 123

Query: 158 KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPP 217
                          +R                V   I   S  E L     +E   +  
Sbjct: 124 ---PSAP----VIDAIR--------AQADPPGTVTDWIGADSLAERLRSAAADE-PAVEC 167

Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
              +   IMYTSGT+G PKGVV THE++ +  S     +D     +   D  L  LP+ H
Sbjct: 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID-----VRYRDRLLLPLPMFH 222

Query: 278 ILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
           +       +   RG ++      D   +   ++E +  +   VP +              
Sbjct: 223 VAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAIL------------- 269

Query: 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
                               N             +    +         R  I+GGAP+ 
Sbjct: 270 --------------------NF------------MRQVPEFAELDAPDFRYFITGGAPMP 297

Query: 397 TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRL-----E 450
             + +          VQGY LTE+CG  T+   ++ +   G+AG  ++++++ +      
Sbjct: 298 EALIKIYAAKNIEV-VQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGV 356

Query: 451 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVK 510
                          GEV ++   L   Y+  P+ TR++  +GWF TGDIG+I   G + 
Sbjct: 357 IRE---------HGEGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLY 407

Query: 511 IIDRKKNLIKISQGEYVALEYLENVYC 537
           I DR K++I IS G        ENVY 
Sbjct: 408 IKDRLKDMI-ISGG--------ENVYP 425

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  228 bits (583), Expect = 3e-67
 Identities = 95/502 (18%), Positives = 147/502 (29%), Gaps = 103/502 (20%)

Query: 46  DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
           ++   +  + P +  L                T+ E+   V  + + L A G  P  RV 
Sbjct: 6   EMLRRAATRAPDHCAL-----AVP-ARGLRL-THAELRARVEAVAARLHADGLRPQQRVA 58

Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
           +   N    V A+ A + L  +            +N  L  AE+  +             
Sbjct: 59  VVAPNSADVVIAILALHRLGAVPAL---------LNPRLKSAELAELIK----------- 98

Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ----PFN 221
                      V               +G +     + +  G+              P  
Sbjct: 99  RGEM----TAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQ 154

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI--L 279
              I YTSGT+G PK  ++      + V  +     Q   +    +V L  +PL H+   
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFM---STQVGLRHGRHNVVLGLMPLYHVVGF 211

Query: 280 DRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339
             V+       G  V             + + + T L   P                   
Sbjct: 212 FAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHL---------------- 255

Query: 340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV 399
                                       LA   A      +L   LR V   GA +   V
Sbjct: 256 ---------------DA-----------LAAAAAHAGSSLKL-DSLRHVTFAGATMPDAV 288

Query: 400 -EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458
            E   +       V  YG TE      +  P      GT      +SE+R+  V   G  
Sbjct: 289 LETVHQHLPGEK-VNIYGTTEAMNSLYMRQPK----TGTEMAPGFFSEVRI--VRIGGGV 341

Query: 459 PLDDPP--CGEVCVRG-KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK 515
                    GE+ V    + F GY   P  T E + DGW+ T D+    P G V+I+ R 
Sbjct: 342 DEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRV 401

Query: 516 KNLIKISQGEYVALEYLENVYC 537
            ++I IS G        EN++ 
Sbjct: 402 DDMI-ISGG--------ENIHP 414

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  224 bits (573), Expect = 7e-66
 Identities = 91/497 (18%), Positives = 161/497 (32%), Gaps = 96/497 (19%)

Query: 46  DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
                  Q+            +    G   + TY+ +Y E   +   L    A    RVG
Sbjct: 5   FWLYKQAQQNGH------HIAI--TDGQESY-TYQNLYCEASLLAKRL---KAYQQSRVG 52

Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
           +Y  N  Q +  + AC   ++    +   L P  +   +   ++  +F        L   
Sbjct: 53  LYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTL----PLELR 108

Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTI 225
             +      +      +T               S +  +     + +        +I +I
Sbjct: 109 GFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASI 168

Query: 226 MYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
           M+TSGT+G  K V  T         G    L         D  +LS LP+ HI    +  
Sbjct: 169 MFTSGTTGPQKAVPQTFRNHYASAIGCKESLG-----FDRDTNWLSVLPIYHISGLSVLL 223

Query: 286 YFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
                G +V      +   +   +   + T ++ VP+    +          ++      
Sbjct: 224 RAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWL----------MQQGLHEP 273

Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFL 403
           ++                                      L+ ++ GGA LS  + E  L
Sbjct: 274 YN--------------------------------------LQKILLGGAKLSATMIETAL 295

Query: 404 RVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRL--EEVPEMGYSPL 460
           +      +   +G+TETC       P+       T G  S   ++++             
Sbjct: 296 QYNLP--IYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGH----- 348

Query: 461 DDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
                GE+ ++G  + +GY    D    +  +G+F+TGDI +I   G V I DR+K+LI 
Sbjct: 349 -----GELMIKGANVMNGYLYPTD-LTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLI- 401

Query: 521 ISQGEYVALEYLENVYC 537
           IS G        EN+Y 
Sbjct: 402 ISGG--------ENIYP 410

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  222 bits (567), Expect = 6e-65
 Identities = 93/502 (18%), Positives = 164/502 (32%), Gaps = 109/502 (21%)

Query: 46  DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
           D++  +   +P       R             T+++      ++ S L   G   G RV 
Sbjct: 10  DVYRRNAALFPD------RTAF--MVDGVRL-THRDYLARAERLASGLLRDGVHTGDRVA 60

Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
           I   NC + +E + A   +  I +P+   L    + F+L       V       +++++ 
Sbjct: 61  ILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVA-GTDYRDIVAG 119

Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTI 225
              S   ++                   G     +  F  L              +   I
Sbjct: 120 VLPSLGGVKKAYA--------------IGDGSGPFAPFKDLASDTPFSAPEFGAADGFVI 165

Query: 226 MYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
           ++T+   G P+G +++   +    S +          +T  DV L  LPL H+    +  
Sbjct: 166 IHTAAVGGRPRGALISQGNLLIAQSSLVDAWR-----LTEADVNLGMLPLFHVTGLGLML 220

Query: 286 YFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
              + G +       D      D+   K T++A    +   I       L++  P     
Sbjct: 221 TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNI-------LDQAAP----- 268

Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR 404
                                   A L             LR V     P +  +E F  
Sbjct: 269 ------------------------AQL-----------ASLRAVTGLDTPET--IERFEA 291

Query: 405 VTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL-----EEVP--EMGY 457
               A     +G +ET G +T     +     +AG    +  + +       +P  E+G 
Sbjct: 292 TCPNATFWATFGQSETSGLSTFAPYRDR--PKSAGRPLFWRTVAVVDAEDRPLPPGEVG- 348

Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDR--K 515
                    E+ +RG T+F GY+ N   T+ +  +GW HTGD+G+   +G +    R  +
Sbjct: 349 ---------EIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPE 399

Query: 516 KNLIKISQGEYVALEYLENVYC 537
           K LI  + G        ENVY 
Sbjct: 400 KELI-KTGG--------ENVYP 412

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  219 bits (560), Expect = 4e-64
 Identities = 110/472 (23%), Positives = 172/472 (36%), Gaps = 104/472 (22%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+     ++ + L A G + G RV        + +    A      + +PL      
Sbjct: 30  SYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL------ 83

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
              N      E+D+              D       +++VC  S       +A + G   
Sbjct: 84  ---NTAYTLHELDYFIT-----------DAEP----KIVVCDPSKRDGIAAIAAKVGATV 125

Query: 198 Y--------SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
                    S  +            +     ++  I+YTSGT+G  KG +L+H+ +A+  
Sbjct: 126 ETLGPDGRGSLTDAAAGAS-EAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNS 184

Query: 250 SGVDLFLDQFEDKMTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDD 307
             +  +        T DDV +  LP+ H   L        F RG+ +     D + +  D
Sbjct: 185 LTLVDYWR-----FTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKIL-D 238

Query: 308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 367
           LM  + T+L GVP  +                                            
Sbjct: 239 LMA-RATVLMGVPTFY-------------------------------------------- 253

Query: 368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTV 426
              LL   ++     G +RL ISG APL  +   E+   T  A L + YG+TET    T 
Sbjct: 254 -TRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVL-ERYGMTETN-MNTS 310

Query: 427 CFPDEMCMVGTAGPVSVYSELRLEEV-PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
              D   + G  GP       R+    PE G   L     G + V+G  +F GY++ P+ 
Sbjct: 311 NPYDGDRVPGAVGPALPGVSARV--TDPETG-KELPRGDIGMIEVKGPNVFKGYWRMPEK 367

Query: 486 TRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
           T+     DG+F TGD+G+I   G V I+ R K+L+ I+ G         NVY
Sbjct: 368 TKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLV-ITGG--------FNVY 410

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  213 bits (546), Expect = 1e-61
 Identities = 94/518 (18%), Positives = 173/518 (33%), Gaps = 110/518 (21%)

Query: 33  GFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRP-FVDGKFGPYVWK----TYKEVYEEVL 87
           GFPS+     +  D    + +K+        +   +  +            + E+ E   
Sbjct: 10  GFPSLYYPKISLADRIDAAAEKFGE------KTAIISAEPKFPSEFPESMNFLEICEVTK 63

Query: 88  QIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHA 147
           ++ S +   G   G  VG+   N   +V  + A   ++   VP         +N +    
Sbjct: 64  KLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVP---------INPMYKSF 114

Query: 148 EIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK--------PYS 199
           E++ +             D  +      +V  + L    K +  +TG++          S
Sbjct: 115 ELEHILN-----------DSEA----TTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNS 159

Query: 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF 259
             E +  G  +   +      ++  I YT GT+G PKGV+LTH  +A     + +     
Sbjct: 160 LSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATG-- 217

Query: 260 EDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAG 318
              ++  D  +  +P+ H  +  +       G   V     +   L +++ + K T    
Sbjct: 218 ---LSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWA 274

Query: 319 VPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK 378
           VP                  P      + L                         +    
Sbjct: 275 VP------------------P----ALNVLVNTL-------------ESSNKTYDWS--- 296

Query: 379 ARLGGRLRLVISGGAPLSTEVEE-FLRVTCC------AFLVQGYGLTETCGPTTVCFPDE 431
                 L++  +G  P++  + E  L++             Q +G+TE C   T   P  
Sbjct: 297 -----YLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR 351

Query: 432 MCMVGTAGPVSVYSELRLEEV-PEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRES 489
           +    T G      EL++  +  E G    + +   GE+ +RG  +F GY+K     +E 
Sbjct: 352 LDKSTTQGVPMSDIELKV--ISLEDGRELGVGES--GEIVIRGPNIFKGYWKREKENQEC 407

Query: 490 II-----DGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
                    +F TGD+G I   G +   DR K +IK  
Sbjct: 408 WWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYK 445

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  212 bits (541), Expect = 8e-61
 Identities = 113/502 (22%), Positives = 179/502 (35%), Gaps = 86/502 (17%)

Query: 34  FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
            P    +  +A       +++Y     +    F +   G     +Y E  E+   +  AL
Sbjct: 15  KPFYPIEEGSAGTQLRKYMERYAKLGAI---AFTNAVTGVDY--SYAEYLEKSCCLGKAL 69

Query: 94  RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
           +  G     R+ +   NC ++   + A   + +   P  +      +   L  ++   VF
Sbjct: 70  QNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVF 129

Query: 154 VQD---KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 210
                  KV  +     ++   ++ +V   S    +              D F+      
Sbjct: 130 SSKKGLDKVITV----QKTVTTIKTIVILDSKVDYRG---------YQCLDTFIKRNTPP 176

Query: 211 EMEI--LPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT 264
             +         +    +  IM +SG++G PKGV LTHE I T  S     +  + ++++
Sbjct: 177 GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI--YGNQVS 234

Query: 265 VDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVF 323
                L+ +P  H         +   G  V      D       L + K T +  VP   
Sbjct: 235 PGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVP--- 291

Query: 324 EKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGG 383
                               +F  L K +L        +       DL            
Sbjct: 292 ---------------T----LFAILNKSELL------NKY------DL-----------S 309

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            L  + SGGAPLS EV E   R      + QGYGLTET     +  P+     G +G V 
Sbjct: 310 NLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETT-SAIIITPEGDDKPGASGKVV 368

Query: 443 VYSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
              + ++  +  +     L   P   GEVCV+G  L  GY  NP+ T+E I  +GW HTG
Sbjct: 369 PLFKAKV--IDLDTK-KSL--GPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTG 423

Query: 499 DIGQILPNGVVKIIDRKKNLIK 520
           DIG         I+DR K+LIK
Sbjct: 424 DIGYYDEEKHFFIVDRLKSLIK 445

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  206 bits (526), Expect = 3e-59
 Identities = 100/465 (21%), Positives = 147/465 (31%), Gaps = 107/465 (23%)

Query: 83  YEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNF 142
           Y E+     A  A       RV ++     +   A+ A     +  VPL    G   +  
Sbjct: 51  YAELAAAAGAT-AGRIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAH 109

Query: 143 ILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE 202
           IL  +    V            PD      L  +         +  +             
Sbjct: 110 ILSDSAPSLVLA---------PPDAELPPALGALERVDVDVRARGAVPED---------- 150

Query: 203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK 262
                             +   ++YTSGT+G PKG V+    +AT +  +          
Sbjct: 151 -------------GADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ----- 192

Query: 263 MTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVP 320
            T +DV +  LPL H+  L   I     R G+                +    T+L GVP
Sbjct: 193 WTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAR-ELNDGATMLFGVP 251

Query: 321 RVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKAR 380
            ++ +                                          +A+ L      A+
Sbjct: 252 TMYHR------------------------------------------IAETLPADPELAK 269

Query: 381 LGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG 439
                RL++SG A L     E     T    + + YG+TET    T    D     GT G
Sbjct: 270 ALAGARLLVSGSAALPVHDHERIAAATGRRVI-ERYGMTETL-MNTSVRADGEPRAGTVG 327

Query: 440 PVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DG 493
                 ELRL       +       LD    GE+ VRG  LF+ Y   PD T  +   DG
Sbjct: 328 VPLPGVELRLVEEDGTPIA-----ALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDG 382

Query: 494 WFHTGDIGQILPNGVVKIIDRK-KNLIKISQGEYVALEYLENVYC 537
           +F TGD+    P+G V+I+ RK  +LI  S G          +  
Sbjct: 383 FFRTGDMAVRDPDGYVRIVGRKATDLI-KSGG--------YKIGA 418

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  207 bits (529), Expect = 4e-59
 Identities = 116/502 (23%), Positives = 181/502 (36%), Gaps = 85/502 (16%)

Query: 34  FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
            P    +  TA +    ++++Y      G   F D      +  TY E +E  +++  A+
Sbjct: 12  APFYPLEDGTAGEQLHKAMKRYALVP--GTIAFTDAHIEVNI--TYAEYFEMSVRLAEAM 67

Query: 94  RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
           +  G     R+ +   N  Q+   +     + +   P  D      +   ++ ++   VF
Sbjct: 68  KRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVF 127

Query: 154 VQD---KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFL--HLGK 208
           V     +K+  +     +    ++ ++   S T  Q            S   F+  HL  
Sbjct: 128 VSKKGLQKILNVQ----KKLPIIQKIIIMDSKTDYQG---------FQSMYTFVTSHLPP 174

Query: 209 VNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT 264
                   P+ F+    I  IM +SG++G PKGV L H T     S     +  F +++ 
Sbjct: 175 GFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQII 232

Query: 265 VDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVF 323
            D   LS +P  H         +   G  V   +  +       L + K      VP   
Sbjct: 233 PDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVP--- 289

Query: 324 EKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGG 383
                               +F    K  L        +       DL            
Sbjct: 290 ---------------T----LFSFFAKSTLI------DKY------DL-----------S 307

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            L  + SGGAPLS EV E   +      + QGYGLTET     +  P+     G  G V 
Sbjct: 308 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETT-SAILITPEGDDKPGAVGKVV 366

Query: 443 VYSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
            + E ++  V  + G   L       GE+CVRG  + SGY  NP+ T   I  DGW H+G
Sbjct: 367 PFFEAKV--VDLDTG-KTL--GVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG 421

Query: 499 DIGQILPNGVVKIIDRKKNLIK 520
           DI     +    I+DR K+LIK
Sbjct: 422 DIAYWDEDEHFFIVDRLKSLIK 443

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  203 bits (518), Expect = 8e-58
 Identities = 96/463 (20%), Positives = 161/463 (34%), Gaps = 84/463 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E   +  SALR  G  P  R+ +   +      A        ++ V     L P
Sbjct: 50  TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               ++L H+    V      + + ++    SA+     +  +     +  +A       
Sbjct: 110 ADYVYMLTHSHARAVIA-SGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAP------ 162

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
             ++E +        +       +I   +Y+SG++G PKG V TH   A      +L+  
Sbjct: 163 -LFEELID-AAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTH---ANLYWTAELYAK 217

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASVGYYHG--DLNALRDDLMELKPT 314
                +  +DV  S   L           F    GA+          +A+   L+E +PT
Sbjct: 218 PILG-IAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPT 276

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF 374
           +  GVP                           LY                     +L  
Sbjct: 277 VFYGVP--------------------------TLYAN-------------------MLVS 291

Query: 375 RKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433
             + AR    +R+  S G  L  E+ E F     C  ++ G G TE      +       
Sbjct: 292 PNLPARADVAIRICTSAGEALPREIGERFTAHFGCE-ILDGIGSTEM-LHIFLSNRAGAV 349

Query: 434 MVGTAG-PVSVYSELRL-----EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
             GT G PV  Y E+ L       VP  E+G          ++ ++G +    Y+ N + 
Sbjct: 350 EYGTTGRPVPGY-EIELRDEAGHAVPDGEVG----------DLYIKGPSAAVMYWNNREK 398

Query: 486 TRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
           +R + +  W  +GD    LPNG      R  +++K+S G+YV+
Sbjct: 399 SRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVS-GQYVS 440

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  204 bits (522), Expect = 1e-57
 Identities = 89/517 (17%), Positives = 162/517 (31%), Gaps = 128/517 (24%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+ +    +  +LR  G +PG    +   N  +      A   L +  V        
Sbjct: 52  SYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVL------- 104

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ---KEMAVQTG 194
               F    +E++  +    +   L++    +       +   +   E    + + +   
Sbjct: 105 --ALFSHQRSELNA-YASQIEPALLIADRQHALFSGDDFL--NTFVTEHSSIRVVQLLND 159

Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA--TFVSGV 252
              ++  + ++     +    P     +     + GT+G PK +  TH         S  
Sbjct: 160 SGEHNLQDAINHP-AEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE 218

Query: 253 DLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF----------FRRGASVGYYHGDLN 302
                    + T    YL  +P AH         +          F  G +V     D +
Sbjct: 219 IC-------QFTQQTRYLCAIPAAHN--------YAMSSPGSLGVFLAGGTV-VLAADPS 262

Query: 303 ALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
           A       L    +  + A VP                                  W+  
Sbjct: 263 A--TLCFPLIEKHQVNVTALVP--------------------------PAV---SLWLQA 291

Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGL 417
             +    + LA               L+L+  GGA LS  +         C  L Q +G+
Sbjct: 292 LIEGESRAQLA--------------SLKLLQVGGARLSATLAARIPAEIGCQ-LQQVFGM 336

Query: 418 TETCGPTTVCFPDEMCMVGTAG-PVSVYSELRL-----EEVP--EMGYSPLDDPPCGEVC 469
            E     T        ++ T G P+    E+ +       +P  E+G           + 
Sbjct: 337 AEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVG----------RLM 386

Query: 470 VRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
            RG   F GYYK+P     +   +G++ +GD+  I P G + +  R+K+ I    GE +A
Sbjct: 387 TRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQI-NRGGEKIA 445

Query: 529 LEYLENVYCVAPIIEDIWVYGDSLKSMLVAVV-VPCE 564
            E +EN+    P +               A+V +  E
Sbjct: 446 AEEIENLLLRHPAVIY------------AALVSMEDE 470

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  198 bits (505), Expect = 7e-56
 Identities = 113/501 (22%), Positives = 191/501 (38%), Gaps = 89/501 (17%)

Query: 34  FPSVD--SDLNTAWDIFSMSVQKYPGNRMLGWRP-FVDGKFGPYVWKTYKEVYEEVLQIV 90
            P +    +L         ++  +        +P  ++G  G     TY +V     ++ 
Sbjct: 13  LPDIYIPKNLPL-HSYVLENLSNHSS------KPCLINGANGDVY--TYADVELTARRVA 63

Query: 91  SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEID 150
           S L   G + G  + ++  + P++V A    +    I         P  +      +   
Sbjct: 64  SGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAK 123

Query: 151 FVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 210
            +  Q    +++   D      ++V +C  S                  + E     + N
Sbjct: 124 LLITQACYYEKVK--DFARESDVKV-MCVDSAPDGCL-----------HFSELTQADE-N 168

Query: 211 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL 270
           E   +   P ++  + Y+SGT+G PKGV+LTH+ + T V+      +        +DV L
Sbjct: 169 EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNP-NLYFHSEDVIL 227

Query: 271 SFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHE 328
             LP+ HI  L+ ++          +     ++ +L   + + K ++   VP        
Sbjct: 228 CVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVP-------- 279

Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLV 388
                     P    +  ++ K               SP  D       K  L   LR++
Sbjct: 280 ----------P----VMMSIAK---------------SPDLD-------KHDLS-SLRMI 302

Query: 389 ISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCF----PDEMCMVGTAGPVSV 443
            SGGAPL  E+ +        A L QGYG+TE      +C            G  G V  
Sbjct: 303 KSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVR 362

Query: 444 YSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGD 499
            +E+++  V PE G + L  P    GE+C+RG  +  GY  +P+ T  +I  +GW HTGD
Sbjct: 363 NAEMKI--VDPETG-ASL--PRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGD 417

Query: 500 IGQILPNGVVKIIDRKKNLIK 520
           IG I  +  + I+DR K LIK
Sbjct: 418 IGYIDDDDELFIVDRLKELIK 438

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  193 bits (494), Expect = 2e-54
 Identities = 80/552 (14%), Positives = 164/552 (29%), Gaps = 137/552 (24%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
               I ++ VQ +P          +    G     +Y E+      + + L   G   G 
Sbjct: 31  PLTRILTVGVQSHPH------SLAI--ICGERQL-SYIELDRLSTNLATRLAEKGLGKGD 81

Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
              +   N  ++     A     ++ +            +     E++  F++  + K L
Sbjct: 82  TALVQLPNVAEFYIVFFALLKAGVVVLN---------ALYSHRQYELNA-FIKQIQPKLL 131

Query: 163 LSPDCRSAQRLRVMV--CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF 220
           +             +        + +  + +      +   +++       ++       
Sbjct: 132 IGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPAETFVDFSSTPAD 191

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIA--TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
            +     + G++G PK +  TH         S            +  +   L  LP  H 
Sbjct: 192 EVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-------GLNSNTRLLCALPAPHN 244

Query: 279 LDRVIEEYF----------FRRGASVGYYHGDLNALRDDLMEL----KPTLLAGVPRVFE 324
                   F             G  V     +      +   +    +  + + VP    
Sbjct: 245 --------FMLSSPGALGVLHAGGCV-VMAPNPEP--LNCFSIIQRHQVNMASLVPSAV- 292

Query: 325 KIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGR 384
                                       + W+      +    +  L             
Sbjct: 293 ----------------------------IMWLE--KAAQYKDQIQSL------------- 309

Query: 385 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAG-PV 441
            +L+  GGA     +  +   V  C  L Q +G+ E          D    +  T G P+
Sbjct: 310 -KLLQVGGASFPESLARQVPEVLNCK-LQQVFGMAEGL-VNYTRLDDSDEQIFTTQGRPI 366

Query: 442 SVYSELRL-----EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DG 493
           S   E+++      EVP  E+          G +  RG   F GYY++P+   +    D 
Sbjct: 367 SSDDEIKIVDEQYREVPEGEI----------GMLATRGPYTFCGYYQSPEHNSQVFDEDN 416

Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK 553
           ++++GD+ Q  P+G ++++ R K+ I    GE +A E +E +  + P +           
Sbjct: 417 YYYSGDLVQRTPDGNLRVVGRIKDQI-NRGGEKIASEEIEKLILLHPEVMH--------- 466

Query: 554 SMLVAVV-VPCE 564
               A+V +  E
Sbjct: 467 ---AALVAIVDE 475

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  191 bits (489), Expect = 1e-53
 Identities = 110/553 (19%), Positives = 185/553 (33%), Gaps = 143/553 (25%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
           T  D+      KY        R  +    G   W +Y+E+     ++ +  +  G +   
Sbjct: 26  TFGDLLRDRAAKYGD------RIAI--TCGNTHW-SYRELDTRADRLAAGFQKLGIQQKD 76

Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
           RV +   N  ++ E + A   L  + V                 +EI + F +  +    
Sbjct: 77  RVVVQLPNIKEFFEVIFALFRLGALPVF---------ALPSHRSSEITY-FCEFAEAAAY 126

Query: 163 LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE--MEILPPQPF 220
           + PD  S    R +     + ++     ++  I     +EFL L  ++   +++   +  
Sbjct: 127 IIPDAYSGFDYRSLA--RQVQSKLP--TLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSS 182

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIA--TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
           ++  +  + G++G  K +  TH+        S            +    VYL+ LP+AH 
Sbjct: 183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-------WLDHSTVYLAALPMAHN 235

Query: 279 LDRVIEEYFFRRGASVGYYHGDLNALR-------------DDLMEL----KPTLLAGVPR 321
                   +     S     G L  L              DD   L    K T+ A VP 
Sbjct: 236 --------Y---PLSSP---GVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPP 281

Query: 322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARL 381
           +                              + WM+          L+ L          
Sbjct: 282 LA-----------------------------MVWMD--AASSRRDDLSSL---------- 300

Query: 382 GGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAG 439
               +++  GGA  S E       V  C  L Q +G+ E          D    +V T G
Sbjct: 301 ----QVLQVGGAKFSAEAARRVKAVFGCT-LQQVFGMAEGL-VNYTRLDDPEEIIVNTQG 354

Query: 440 -PVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-D 492
            P+S Y E R+      +V   G +       G +  RG     GYYK  +    S   D
Sbjct: 355 KPMSPYDESRVWDDHDRDVKP-GET-------GHLLTRGPYTIRGYYKAEEHNAASFTED 406

Query: 493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL 552
           G++ TGDI ++  +G + +  R K+ I    GE VA E +EN     P + D        
Sbjct: 407 GFYRTGDIVRLTRDGYIVVEGRAKDQI-NRGGEKVAAEEVENHLLAHPAVHD-------- 457

Query: 553 KSMLVAVV-VPCE 564
                A+V +P +
Sbjct: 458 ----AAMVSMPDQ 466

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  193 bits (492), Expect = 5e-52
 Identities = 115/507 (22%), Positives = 189/507 (37%), Gaps = 93/507 (18%)

Query: 34  FPSVD-SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSA 92
            P +   +  +  D    ++ ++     L     ++G  G     TY +V+    QI + 
Sbjct: 52  LPDIYIPNHLSLHDYIFQNISEFATKPCL-----INGPTGHVY--TYSDVHVISRQIAAN 104

Query: 93  LRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV 152
               G      V +   NCP++V +  A +              P  +      +    +
Sbjct: 105 FHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLI 164

Query: 153 FVQD---KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV 209
             +     K+K L     ++   + ++    + +    E  +        + E       
Sbjct: 165 ITEARYVDKIKPL-----QNDDGVVIVCIDDNESVPIPEGCL-------RFTELTQSTT- 211

Query: 210 NEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV- 265
              E++     +   +  + Y+SGT+G PKGV+LTH+ +   V+ V   +D     +   
Sbjct: 212 EASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGL---VTSVAQQVDGENPNLYFH 268

Query: 266 -DDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRV 322
            DDV L  LP+ HI  L+ ++        A +     ++N L + +   K T+   VP  
Sbjct: 269 SDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVP-- 326

Query: 323 FEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLG 382
                           P    I  A+ K               S   +       K  L 
Sbjct: 327 ----------------P----IVLAIAK---------------SSETE-------KYDLS 344

Query: 383 GRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCF----PDEMCMVGT 437
             +R+V SG APL  E+ +        A L QGYG+TE      +             G 
Sbjct: 345 -SIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGA 403

Query: 438 AGPVSVYSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DG 493
            G V   +E+++  V P+ G   L       GE+C+RG  +  GY  NP  T E+I  DG
Sbjct: 404 CGTVVRNAEMKI--VDPDTG-DSL--SRNQPGEICIRGHQIMKGYLNNPAATAETIDKDG 458

Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIK 520
           W HTGDIG I  +  + I+DR K LIK
Sbjct: 459 WLHTGDIGLIDDDDELFIVDRLKELIK 485

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  169 bits (430), Expect = 1e-45
 Identities = 124/500 (24%), Positives = 179/500 (35%), Gaps = 125/500 (25%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G     TY EVY+   +++  LRA G   G RV   G N  + +EA  A   +  +    
Sbjct: 43  GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTA 102

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK---E 188
              L P  + +IL+HAE   +   D  +  L+       + ++  V       E     E
Sbjct: 103 NPRLSPKEIAYILNHAEDKVLLF-DPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYE 161

Query: 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI--- 245
            A+     P    E                    C + YT+GT+G PKGVV +H  +   
Sbjct: 162 EALGEEADPVRVPE-------RAA----------CGMAYTTGTTGLPKGVVYSHRALVLH 204

Query: 246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI----------LDRVIEEYFFRRGASVG 295
           +   S VD         ++  DV L  +P+ H+          L           GA   
Sbjct: 205 SLAASLVDGT------ALSEKDVVLPVVPMFHVNAWCLPYAATL----------VGAKQV 248

Query: 296 YYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351
                L+     L+EL      T  AGVP V                             
Sbjct: 249 LPGPRLDP--ASLVELFDGEGVTFTAGVPTV----------------------------- 277

Query: 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP---LSTEVEEF-LRVTC 407
              W+ +                     RL    RLV+ G A    L    E   + V  
Sbjct: 278 ---WLAL------------ADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVR- 321

Query: 408 CAFLVQGYGLTETCGPTTVCFP----------DEMCMVGTAGPVSVYSELRLEEVPEMGY 457
                QGYGLTET       F           +++ +    G       LR+ +  E   
Sbjct: 322 -----QGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRP 375

Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKK 516
            P D    GEV ++G  +  GYY N + TR ++  DG+F TGDI      G V+I DR K
Sbjct: 376 VPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLK 435

Query: 517 NLIKISQGEYVA-LEYLENV 535
           +LIK S GE+++ ++ LEN 
Sbjct: 436 DLIK-SGGEWISSVD-LENA 453

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  120 bits (302), Expect = 1e-28
 Identities = 83/442 (18%), Positives = 149/442 (33%), Gaps = 93/442 (21%)

Query: 78  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
            ++E+ E   Q  + L  + G + G RV +     P+W   +  C    LI +P    + 
Sbjct: 75  NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMK 134

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKEL--LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194
              + + L  ++   +   D+ ++E+  ++ +C S   LR+ +  +  + +         
Sbjct: 135 STDILYRLQMSKAKAIVAGDEVIQEVDTVASECPS---LRIKLLVSEKSCD--------- 182

Query: 195 IKPYSWDEFLHL--GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV 252
                W  F  L          +         I +TSGTSG PK    ++ ++       
Sbjct: 183 ----GWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMD 238

Query: 253 DLFLDQFEDKMTVDDVYLSFLPLA---HILDRVIEEYFFRRGASVGYYHG---DLNALRD 306
             +       +   D+  +        +IL  ++E +    GA    +     D   +  
Sbjct: 239 AGWTG-----LQASDIMWTISDTGWILNILCSLMEPWAL--GACTFVHLLPKFDPLVILK 291

Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
            L       + G P V+              R L +     L  YK              
Sbjct: 292 TLSSYPIKSMMGAPIVY--------------RMLLQ---QDLSSYKF------------- 321

Query: 367 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTT 425
                             L+  ++ G  L  E  E +   T    + + YG TET G T 
Sbjct: 322 ----------------PHLQNCVTVGESLLPETLENWRAQTGLD-IRESYGQTET-GLTC 363

Query: 426 VCFPDEMCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT-----LFSGY 479
           +         G  G   S Y    ++ + + G + L     G++ +R K      +FSGY
Sbjct: 364 MVSKTMKIKPGYMGTAASCY---DVQIIDDKG-NVLPPGTEGDIGIRVKPIRPIGIFSGY 419

Query: 480 YKNPDLTRESIIDGWFHTGDIG 501
             NPD T  +I   ++  GD G
Sbjct: 420 VDNPDKTAANIRGDFWLLGDRG 441

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  116 bits (293), Expect = 6e-28
 Identities = 85/512 (16%), Positives = 144/512 (28%), Gaps = 139/512 (27%)

Query: 52  VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC 111
            +  P +    +  +     G  +  T+ ++Y   L +   L   G+  G RV I     
Sbjct: 34  ARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQG 92

Query: 112 PQWVEAMEACNALSLICVPLYDTLGPGAVN---FILDHAEIDFVFVQDKKVKELLSPDCR 168
            ++V A         I VPL    G         +L  +    +      V ++      
Sbjct: 93  LEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDV------ 146

Query: 169 SAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW--DEFLHLGKVNEMEILPPQPFNICTIM 226
                             + +A + G  P S    + L L   N       +  +   + 
Sbjct: 147 -----------------VQHVARRPGESPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQ 189

Query: 227 YTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
           YTSG++  P GVV++H+ +       +  +    +     +   +S+LP  H        
Sbjct: 190 YTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHD------- 242

Query: 286 YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP---LRR 342
                   V                  P +L G P V                P   L+R
Sbjct: 243 -----MGLVIGI-------------CAP-ILGGYPAVL-------------TSPVSFLQR 270

Query: 343 --RIFDALYKYK--LAWM-NMGYKQREASPLADLLAFRKVKARLGG----RLRLVISGGA 393
             R    +       +   N  +         +L A R     + G     +  ++SG  
Sbjct: 271 PARWMHLMASDFHAFSAAPNFAF---------ELAARRTTDDDMAGRDLGNILTILSGSE 321

Query: 394 PLSTE-VEEFLRVTCCAF---------LVQGYGLTETC----------GPTTVCFPDEMC 433
            +    ++ F       F         +   Y L E             P TV F  E  
Sbjct: 322 RVQAATIKRFAD----RFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESL 377

Query: 434 MVGTAGPVSVYSELRLEEV------------PEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
             G A P +      L                +       D   GE+ V G  + +GY++
Sbjct: 378 SAGHAKPCAGGGATSLISYMLPRSPIVRIVDSDTC-IECPDGTVGEIWVHGDNVANGYWQ 436

Query: 482 NPDLTRESII------------DGWFHTGDIG 501
            PD +  +                W  TGD G
Sbjct: 437 KPDESERTFGGKIVTPSPGTPEGPWLRTGDSG 468

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  116 bits (293), Expect = 2e-27
 Identities = 90/496 (18%), Positives = 161/496 (32%), Gaps = 126/496 (25%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+++ +    I + L+A GA+PG RV +  A     ++A   C     I VP+Y     
Sbjct: 42  TYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQE 101

Query: 138 GA---VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194
                   I+ +++   V +    +K+  + +  +  +   +     +  E  E+   + 
Sbjct: 102 KLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPA---IALESIELNRSSS 158

Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
            +P                    +  +I  + YTSG++  PKGV+++H  +   ++ +  
Sbjct: 159 WQPT-----------------SIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT 201

Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPT 314
                   M  + +  S+LP  H +           G            ++  +M     
Sbjct: 202 SFH-----MNDETIIFSWLPPHHDM-----------GLIGCILTPIYGGIQAIMMS---- 241

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK--LAWM-NMGYKQREASPLADL 371
                P  F +             PL       + KYK  ++   N  Y         D 
Sbjct: 242 -----PFSFLQ------------NPL--SWLKHITKYKATISGSPNFAY---------DY 273

Query: 372 LAFRKVKARLGG----RLRLVISGGAPLSTE-VEEFLRVTCCAFLVQG---------YGL 417
              R  + +  G          +G  P+  E +E F +    AF   G         YGL
Sbjct: 274 CVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQ----AFKEFGFRKEAFYPCYGL 329

Query: 418 TETC----------GPTTVCFPDEMCMVGTAGPVSVYSELRLEEV-------------PE 454
            E               T+    E             S    + V             P+
Sbjct: 330 AEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPD 389

Query: 455 MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---------IDGWFHTGDIGQILP 505
               P D    GE+ V+  ++  GY+  P+ TR +             +  TGD+G  L 
Sbjct: 390 TL-IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLG-FLH 447

Query: 506 NGVVKIIDRKKNLIKI 521
              + +  R K+LI I
Sbjct: 448 ENELYVTGRIKDLIII 463

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 75.5 bits (185), Expect = 9e-15
 Identities = 54/373 (14%), Positives = 102/373 (27%), Gaps = 53/373 (14%)

Query: 150 DFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ--KEMAVQTGIKPY----SWDEF 203
           D+    D  +K     D  +  +  +   F+  T       M  Q    P     + ++ 
Sbjct: 6   DYSLEIDAVMKAAQINDTNNFVQALMRWHFSKETGSPFWLGMREQLNFDPIKDVKTINDL 65

Query: 204 LHLG-KVNEMEILPPQPF--------NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
                  + +   P            +   +  + GT+G PK VV     I   +S    
Sbjct: 66  RQFSDISHCLRQEPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMS 125

Query: 255 FLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKP 313
                          L+ +P   HI+  + +E   R G        D    R     L  
Sbjct: 126 GYQHRP--GRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSIDID---PRWVKRSLSE 180

Query: 314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP--LADL 371
              A V +    + + ++  L       R +                     +P  L +L
Sbjct: 181 GDTATVRKYTHHLVDQVQNTLMNQDI--RFLV-------------------TTPPVLREL 219

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR--VTCCAFLVQGYGLTETCGPTTVCFP 429
           L   +V  ++   L  +  GG  L+ +  +F+   +         YG T   G +     
Sbjct: 220 LKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI 279

Query: 430 DEMCMVGTAGPVSVYSELRLEEV-PEMGYSPLDDPPCGEVCVRGKT---LFSGYYKNPDL 485
                       S +    +  V        ++    G V V   +    +    +    
Sbjct: 280 TSESQQVIYDSFSPFITYDV--VDSITA-QTVEYGERGNVIVTHLSPWAFYPRVAERDTA 336

Query: 486 TRESIIDGWFHTG 498
            R   + G+    
Sbjct: 337 IRLPGVSGFAGDR 349

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 77.2 bits (189), Expect = 1e-14
 Identities = 89/604 (14%), Positives = 162/604 (26%), Gaps = 168/604 (27%)

Query: 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGD-PKGVVLTHE---- 243
           M  +TG   Y + + L    V E   +    F+   +        D PK ++   E    
Sbjct: 7   MDFETGEHQYQYKDILS---VFEDAFV--DNFDCKDVQ-------DMPKSILSKEEIDHI 54

Query: 244 -TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH------ILDRVIEEYFFRRGASVGY 296
                 VSG          K    ++   F+          ++  +  E    R  S+  
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQE--EMVQKFVEEVLRINYKFLMSPIKTEQ---RQPSMMT 109

Query: 297 --YHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP--------------- 339
             Y    + L +D           V R+ +   + +++AL ELRP               
Sbjct: 110 RMYIEQRDRLYNDNQVFAKY---NVSRL-QPYLK-LRQALLELRPAKNVLIDGVLGSGKT 164

Query: 340 ------LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
                            +K+ W+N+       + L  L      +       R   S   
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNWTSRSDHSSNI 223

Query: 394 PLSTE-VEEFLRVTCC------AFLVQGYGLTETCGPTTV-CFPDEMC--MVGT------ 437
            L    ++  LR            LV    L           F +  C  ++ T      
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLV----LLNVQNAKAWNAF-NLSCKILLTTRFKQVT 278

Query: 438 -AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGY--YKNPDLTRESIIDGW 494
                +  + + L+       +P       E     K+L   Y   +  DL RE +    
Sbjct: 279 DFLSAATTTHISLDHHSM-TLTP------DE----VKSLLLKYLDCRPQDLPREVLTTNP 327

Query: 495 FHTGDIGQILPNGVVKI-------IDRKKNLIKIS---------QGEYVALEYL-ENVYC 537
                I + + +G+           D+   +I+ S         +  +  L     + + 
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 538 VAPIIEDIWVYGDSLKSMLVAVVVP----CEEDTKKWAYS-------------------- 573
              ++  IW        M+V   +      E+  K+   S                    
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447

Query: 574 ------NGHAGSFLELCSLVQLQNYILS----ELKNA--AER---------------NKV 606
                 N       +      L  Y  S     LKN    ER                K+
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507

Query: 607 IFA----NWDTGCFSLLRGFEHIKGVILD--PRPFDMERDLVTATLKKKRNKLLIYYQVE 660
                  N      + L+  +  K  I D  P+   +   ++   L K    L+     +
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD-FLPKIEENLICSKYTD 566

Query: 661 IDQL 664
           + ++
Sbjct: 567 LLRI 570

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 4e-09
 Identities = 50/383 (13%), Positives = 104/383 (27%), Gaps = 135/383 (35%)

Query: 71  FGPYVWKTYKEVY--EEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALS-LI 127
           F  + W   K     E VL+++  L             + +N    + +++    L  L+
Sbjct: 182 FKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ--AELRRLL 238

Query: 128 CVPLY-DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVC--FTSLT- 183
               Y + L       +L +       VQ+ K     +  C      ++++   F  +T 
Sbjct: 239 KSKPYENCL------LVLLN-------VQNAKAWNAFNLSC------KILLTTRFKQVTD 279

Query: 184 ----AEQKEMAVQTGIKPYSWDEFLHL-GKVNEMEI--LPPQ-----PF----------- 220
               A    +++       + DE   L  K  +     LP +     P            
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339

Query: 221 NICTIMYTSGTSGD----------------------------PKGVVLTHETIATF---- 248
            + T       + D                            P    +    ++      
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399

Query: 249 -VSGVDLFLDQFEDK-----------MTVDDVYLSFLPLA------HILDRVIEEYFFRR 290
             S V + +++               +++  +YL            H    +++ Y   +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH--RSIVDHYNIPK 457

Query: 291 GASVGYYHGDLNALRDD----------LMELKPT-LLAGVPRVF-------EKI-HEG-- 329
                +   DL     D          L  ++    +     VF       +KI H+   
Sbjct: 458 ----TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513

Query: 330 ------IKKALEELRPLRRRIFD 346
                 I   L++L+  +  I D
Sbjct: 514 WNASGSILNTLQQLKFYKPYICD 536

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 76.1 bits (188), Expect = 1e-14
 Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 33/218 (15%)

Query: 37  VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS 96
           V  + N A+D+  +  +  P    + W    D      ++ T+K++     +  +     
Sbjct: 51  VPENFNFAYDVVDVYARDSPEKLAMIW---CDDYGNEKIF-TFKDLKYYSDKAANFFVKH 106

Query: 97  GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156
           G   G  V +   +   +   M   + L  I VP    L    + + ++ A +  +    
Sbjct: 107 GIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIA 166

Query: 157 -----KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE 211
                ++V E    +C      +  V                G     W +F    +   
Sbjct: 167 EDDVPEQVDEAH-AECGDIPLKKAKV---------------GGDVLEGWIDFRKELE-ES 209

Query: 212 MEILPPQPFNICT-------IMYTSGTSGDPKGVVLTH 242
             I       + T       + ++SGT+G PK V   +
Sbjct: 210 SPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDN 247

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 62.6 bits (153), Expect = 2e-10
 Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 19/128 (14%)

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTET---CGPTTVCFPDEMCMVGTAG 439
            L+  +  G PL+ EV   FL  T    L++G+G TET          FP      G+ G
Sbjct: 342 TLKYAVVAGEPLNPEVFNRFLEFTGIK-LMEGFGQTETVVTIAT----FPWMEPKPGSIG 396

Query: 440 -PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT-----LFSGYYKNPDLTRESIIDG 493
            P   Y   ++E +   G    +    GE+ +         LF  Y K+P+ T E+  DG
Sbjct: 397 KPTPGY---KIELMDRDG-RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDG 452

Query: 494 WFHTGDIG 501
           ++HTGD+ 
Sbjct: 453 YYHTGDMA 460

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 64.1 bits (157), Expect = 7e-11
 Identities = 59/326 (18%), Positives = 99/326 (30%), Gaps = 106/326 (32%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I++TSGT+G PKGV ++H+ + +F +     ++     +      L+  P +   D    
Sbjct: 150 IIFTSGTTGQPKGVQISHDNLLSFTNW---MIEDAAFDVPKQPQMLAQPPYS--FD---- 200

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG-----VPRVFEKIHEGIKKALEELRP 339
                   SV              M   PTL  G     +P+             E +  
Sbjct: 201 -------LSV--------------MYWAPTLALGGTLFALPK-------------ELVAD 226

Query: 340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE- 398
            ++ +F  + +  +            S     +            L      G  L+   
Sbjct: 227 FKQ-LFTTIAQLPVGIWTS-----TPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVST 280

Query: 399 VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458
             +       A ++  YG TE     TV              +S   E+  E V      
Sbjct: 281 ARKLFERFPSAKIINAYGPTEA----TVA-------------LSAI-EITREMVDNYTRL 322

Query: 459 P------------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWF---- 495
           P            +D+          GE+ V G  +  GY  NP+ T E+          
Sbjct: 323 PIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAY 382

Query: 496 HTGDIGQILPNGV----------VKI 511
           HTGDIG +  + +          +K 
Sbjct: 383 HTGDIGSLTEDNILLYGGRLDFQIKY 408

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 60.3 bits (147), Expect = 2e-09
 Identities = 87/485 (17%), Positives = 158/485 (32%), Gaps = 150/485 (30%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI------CVPL 131
           +Y+E+ EE  +I   L+  GA  G  V +Y     + V  +        +       +P+
Sbjct: 491 SYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG------VLKAGAAYLPV 544

Query: 132 YDTLGPGA-VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA 190
            D   P   ++++L  +    +    +++KE  +    +   L +               
Sbjct: 545 -DPKLPEDRISYMLADSAAACLLTH-QEMKEQAAELPYTGTTLFI--------------- 587

Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS 250
                              +    + P   +   IMYTSGT+G PKG + TH  I   V 
Sbjct: 588 --------DDQTRFEEQASDPATAIDPN--DPAYIMYTSGTTGKPKGNITTHANIQGLVK 637

Query: 251 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASV----GYYHGDLNAL 304
            VD          +  D +LS    A   D    +++      A +     +   D   L
Sbjct: 638 HVDYM------AFSDQDTFLSVSNYA--FDAFTFDFYASMLNAARLIIADEHTLLDTERL 689

Query: 305 RDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE 364
            D +++    ++     +F  + +      + ++ LR                       
Sbjct: 690 TDLILQENVNVMFATTALFNLLTD---AGEDWMKGLRC---------------------- 724

Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGP 423
                                  ++ GG   S   V + LR+     L+  YG TE    
Sbjct: 725 -----------------------ILFGGERASVPHVRKALRIMGPGKLINCYGPTE---- 757

Query: 424 TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP-------------LDD-----PP- 464
            TV               + +    + ++P+   S              L++     P  
Sbjct: 758 GTVF-------------ATAH---VVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFG 801

Query: 465 -CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH-------TGDIGQILPNGVVKIIDRKK 516
             GE+C+ G  +  GY    DLT+E  I+  F        TGD+ + LP+G ++   R  
Sbjct: 802 AVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRID 861

Query: 517 NLIKI 521
           + +KI
Sbjct: 862 DQVKI 866

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 58/322 (18%), Positives = 95/322 (29%), Gaps = 104/322 (32%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK---MTVDDVYLSFLPLAHILDR 281
           ++YTSG++G PKGV ++   +++F       +     K   +     +L     A   D 
Sbjct: 180 LLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRA--FDV 237

Query: 282 VIEEYF--FRRGAS--VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
            I E F  +R G     G     L+ L     EL  T    VP + ++         E+ 
Sbjct: 238 HIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL----VPEDA 293

Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
             L                                               +  GG  ++ 
Sbjct: 294 PHLVY---------------------------------------------LGVGGEKMTP 308

Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
             ++    +    LV  YG TE     T+               S    L   +   +G 
Sbjct: 309 RTQQIWSSSDRVALVNVYGPTE----VTIG-------------CSAGRILPDSDTRCIG- 350

Query: 458 SP--------LDD------PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGW--FHTGD 499
            P        L             GE+ + G  + +GY   PD      I+G   + TGD
Sbjct: 351 HPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGD 410

Query: 500 IGQILPNGV----------VKI 511
           I ++  +            VK+
Sbjct: 411 IVRMDADSSILFLGRKDEQVKV 432

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 54.0 bits (131), Expect = 9e-08
 Identities = 53/284 (18%), Positives = 91/284 (32%), Gaps = 84/284 (29%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I+YTSG++G+PKGV ++   + +F   +      F   ++   ++L+  P +   D    
Sbjct: 148 IIYTSGSTGNPKGVQISAANLQSFTDWIC---ADFP--VSGGKIFLNQAPFS--FD---- 196

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
                   SV              M+L P L +G         + + K         + +
Sbjct: 197 -------LSV--------------MDLYPCLQSGGTLHCVT-KDAVNKP--------KVL 226

Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFL 403
           F+ L K  L            S +   L        L       +  G  L     +  L
Sbjct: 227 FEELKKSGLNVWTS-----TPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALL 281

Query: 404 RVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP---- 459
                A +   YG TE     TV              V+   E+  + +      P    
Sbjct: 282 ERFPKAKIFNTYGPTEA----TVA-------------VTSV-EITNDVISRSESLPVGFA 323

Query: 460 --------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRE 488
                   +D+     P    GE+ + G ++  GY   P+LT +
Sbjct: 324 KPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEK 367

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 53.3 bits (129), Expect = 2e-07
 Identities = 57/322 (17%), Positives = 87/322 (27%), Gaps = 101/322 (31%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I ++SGT+G PK +  TH  I        L L Q          +L   PL+   D    
Sbjct: 169 INFSSGTTGRPKAIACTHAGI------TRLCLGQSFLAFAPQMRFLVNSPLS--FDAATL 220

Query: 285 EYF--FRRGASV---GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339
           E +     G           D   LR  + E           +F  + +      + L  
Sbjct: 221 EIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVD---LDPDCLGG 277

Query: 340 LRRRIF--DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
           LR+ +   D L                      +   R+   R                 
Sbjct: 278 LRQLLTGGDIL---------------------SVPHVRRALLRHPRLH------------ 304

Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV-------SVY---SEL 447
                        LV GYG TE    T      +  +     P+       +V       
Sbjct: 305 -------------LVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHG 351

Query: 448 RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH--------TGD 499
           +   + E   +       GE+   G  L  GY  +   TR S ++  +         TGD
Sbjct: 352 QE--IAEPDRA-------GEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGD 402

Query: 500 IGQILPNGV----------VKI 511
             +    G           VK+
Sbjct: 403 RARYDEQGRLRFIGRGDGQVKL 424

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 51.7 bits (125), Expect = 4e-07
 Identities = 50/284 (17%), Positives = 95/284 (33%), Gaps = 84/284 (29%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I+YTSG++G+PKGV +T+  + +F        + F   +    V+L+  P +   D    
Sbjct: 149 IIYTSGSTGNPKGVQITYNCLVSFTKWAV---EDFN--LQTGQVFLNQAPFS--FD---- 197

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
                   SV              M++ P+L+ G         + I +         + +
Sbjct: 198 -------LSV--------------MDIYPSLVTGGTLWAID-KDMIARP--------KDL 227

Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFL 403
           F +L +  +            S     L        +   ++  +  G  L  E   + +
Sbjct: 228 FASLEQSDIQVWTS-----TPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLI 282

Query: 404 RVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP---- 459
                A ++  YG TE     TV              V+    +  E + +    P    
Sbjct: 283 ERFPKATIMNTYGPTEA----TVA-------------VTGI-HVTEEVLDQYKSLPVGYC 324

Query: 460 --------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRE 488
                   + +     P    GE+ + G ++  GY  +P+LT +
Sbjct: 325 KSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEK 368

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 50.9 bits (123), Expect = 9e-07
 Identities = 60/330 (18%), Positives = 103/330 (31%), Gaps = 124/330 (37%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           ++YTSGT+G+PKG +L H+ I+        F +     +T  D    F  ++   D  + 
Sbjct: 187 VIYTSGTTGNPKGTMLEHKGISNLKVF---FENSLN--VTEKDRIGQFASIS--FDASVW 239

Query: 285 EYF--FRRGASV----GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
           E F     GAS+         D       + + + T++   P     +        E + 
Sbjct: 240 EMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP------ERIL 293

Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
            ++                                              +I+ G+  S  
Sbjct: 294 SIQT---------------------------------------------LITAGSATSPS 308

Query: 399 -VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
            V ++         +  YG TE    TT+C              + +      +      
Sbjct: 309 LVNKWKEKVT---YINAYGPTE----TTIC-------------ATTW---VATKETIGHS 345

Query: 458 SP------------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH-- 496
            P            +D+          GE+C+ G+ L  GY+K P+LT +  +D  F   
Sbjct: 346 VPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPG 405

Query: 497 -----TGDIGQILPNGV----------VKI 511
                TGD  + L +G           VKI
Sbjct: 406 EKLYKTGDQARWLSDGNIEYLGRIDNQVKI 435

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           +Y+E++ +V +  + L   G + G  V IY    P+   AM AC
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLAC 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	673
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.95
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	99.3
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	99.14
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.68
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.64
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.48
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	91.36
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	90.7
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	89.8
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	86.7
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	80.19

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=4.5e-74  Score=639.29  Aligned_cols=504  Identities=18%  Similarity=0.170  Sum_probs=409.8

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      ..|+.++|+++++++||++|+++.    +     +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus        24 ~~tl~~~l~~~a~~~p~~~A~~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA   94 (539)
T 1mdb_A           24 GETFGDLLRDRAAKYGDRIAITCG----N-----THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA   94 (539)
T ss_dssp             SCCHHHHHHHHHHHHTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCCEEEEeC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            468999999999999999999864    2     6899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhh----hhhcccccccccceEEEEeCCCcHHHHHHHhhCCCc
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  196 (673)
                      |+++|++++|+++.++.+++.++++.++++++|+++....    ..........+....++..++..             
T Consensus        95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  161 (539)
T 1mdb_A           95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE-------------  161 (539)
T ss_dssp             HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred             HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence            9999999999999999999999999999999999875321    01111111122333343333211             


Q ss_pred             eecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchH
Q 005867          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (673)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~  276 (673)
                        .+.++.... ..........++++++++|||||||.||||.++|+++.+.+......+     ++.+++++++.+|++
T Consensus       162 --~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~  233 (539)
T 1mdb_A          162 --EFLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMA  233 (539)
T ss_dssp             --TSEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred             --chhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeeccc
Confidence              111121111 111122345789999999999999999999999999999988877776     788999999999999


Q ss_pred             hHHHHHH--hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 005867          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (673)
Q Consensus       277 ~~~gl~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (673)
                      |.+++..  ++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+.+.....                    
T Consensus       234 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------  293 (539)
T 1mdb_A          234 HNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR--------------------  293 (539)
T ss_dssp             SHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC--------------------
T ss_pred             ccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc--------------------
Confidence            9999874  6778999999999887 9999999999999999999999999887643211                    


Q ss_pred             HHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCcc
Q 005867          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (673)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~  433 (673)
                                               ...+++||.+++||+++++++.+.|.+.+|+++++.||+||++..+.........
T Consensus       294 -------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~  348 (539)
T 1mdb_A          294 -------------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEI  348 (539)
T ss_dssp             -------------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred             -------------------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHh
Confidence                                     0112589999999999999999999998999999999999976443322222223


Q ss_pred             ccCCcCCCccc-eeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCceEEECCCCcEEE
Q 005867          434 MVGTAGPVSVY-SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI  511 (673)
Q Consensus       434 ~~~~~G~~~~~-~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~  511 (673)
                      ..+++|+|+++ .+++|+| +++.  +++.|+.|||+|+||+++.||+++++.|...| .+|||+|||+|++|+||+|++
T Consensus       349 ~~~~~G~p~~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~  425 (539)
T 1mdb_A          349 IVNTQGKPMSPYDESRVWD-DHDR--DVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV  425 (539)
T ss_dssp             HHHCCCEESSTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred             cCCCCCcccCCCceEEEEC-CCCC--CCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEE
Confidence            34789999975 5899998 5554  55667899999999999999999999999999 699999999999999999999


Q ss_pred             eecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHH
Q 005867          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  588 (673)
Q Consensus       512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (673)
                      +||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++..+.                 .+.++
T Consensus       426 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~-----------------~~~~~  487 (539)
T 1mdb_A          426 EGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA-----------------PKAAE  487 (539)
T ss_dssp             EEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSC-----------------CCHHH
T ss_pred             eccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCC-----------------CCHHH
Confidence            9999999996 8999999999999999999999999997654   4788999877421                 02223


Q ss_pred             HHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhh
Q 005867          589 LQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK  667 (673)
Q Consensus       589 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~~~ly~~  667 (673)
                      +        +++++++.             ||.|++|+.|++++      .+|+|++||++|++|+++|.++|+++|.+
T Consensus       488 l--------~~~l~~~~-------------L~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~~~~~~i~~~y~~  539 (539)
T 1mdb_A          488 L--------KAFLRERG-------------LAAYKIPDRVEFVE------SFPQTGVGKVSKKALREAISEKLLAGFKK  539 (539)
T ss_dssp             H--------HHHHHHTT-------------CCGGGSCSEEEECS------SCCBCTTSCBCHHHHHHHHHHHHHTC---
T ss_pred             H--------HHHHHhCC-------------CCcccCCCEEEEec------cCCCCCCcCEeHHHHHHHHHHHHhccccC
Confidence            3        33333334             99999999999983      34699999999999999999999999973

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=8.5e-74  Score=638.84  Aligned_cols=517  Identities=21%  Similarity=0.236  Sum_probs=391.2

Q ss_pred             CCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeecccCC--CCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcC
Q 005867           32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGK--FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA  109 (673)
Q Consensus        32 ~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~--~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~  109 (673)
                      .++|+.+....||.++|+++|+++||++|+++.   ++.  .+..+++||+||.++++++|++|++.|+++||+|+++++
T Consensus         9 ~~~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~   85 (549)
T 3g7s_A            9 IGFPSLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIP   85 (549)
T ss_dssp             CCCCCCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred             cCCCCCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECC
Confidence            345555666789999999999999999999987   421  234478999999999999999999999999999999999


Q ss_pred             CcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHH
Q 005867          110 NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM  189 (673)
Q Consensus       110 ~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  189 (673)
                      |++++++++|||+++|++++|+++.++.+++.++++.++++++|++......+.......  ....++..+.        
T Consensus        86 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~--------  155 (549)
T 3g7s_A           86 NSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT--GVERVFVVGG--------  155 (549)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS--CCCEEEEETC--------
T ss_pred             CCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC--CCcEEEEeCC--------
Confidence            999999999999999999999999999999999999999999999988766553322211  2334444432        


Q ss_pred             HhhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEE
Q 005867          190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY  269 (673)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~  269 (673)
                            ...++.++...............++++++|+|||||||.||+|.++|+++.+.+......+     ++..+|++
T Consensus       156 ------~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~  224 (549)
T 3g7s_A          156 ------EVNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDTI  224 (549)
T ss_dssp             ------SSSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCEE
T ss_pred             ------CCcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCEE
Confidence                  1235666665543222222222348999999999999999999999999999998887777     78999999


Q ss_pred             EEecchHhHHHHHHhHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 005867          270 LSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (673)
Q Consensus       270 l~~~p~~~~~gl~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (673)
                      ++.+|++|.+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+........            
T Consensus       225 ~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~------------  292 (549)
T 3g7s_A          225 VGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKT------------  292 (549)
T ss_dssp             ECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCC------------
T ss_pred             EEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhccc------------
Confidence            999999999998887888999999999887 9999999999999999999999999987643211000            


Q ss_pred             HHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHh----cC---CceeeecCCCCCC
Q 005867          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC---AFLVQGYGLTETC  421 (673)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~----~g---~~v~~~YG~tE~~  421 (673)
                                                     ..++++|.+++||+++++++.+.+.+.    ++   +++++.||+||++
T Consensus       293 -------------------------------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~  341 (549)
T 3g7s_A          293 -------------------------------YDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEAC  341 (549)
T ss_dssp             -------------------------------CCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGS
T ss_pred             -------------------------------CCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccc
Confidence                                           012489999999999999999999887    66   8999999999999


Q ss_pred             CcccccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc---cCC--ccc
Q 005867          422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---IDG--WFH  496 (673)
Q Consensus       422 ~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~---~~g--~~~  496 (673)
                      ++++...........++|.|+++++++|+|.+++  .+++.|+.|||+|+||+++.||+++++.+.+.|   .+|  ||+
T Consensus       342 ~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~  419 (549)
T 3g7s_A          342 PMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDG--RELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFR  419 (549)
T ss_dssp             SEEEECCGGGGGGTTSCCEECTTCEEEEECSSSC--CEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEE
T ss_pred             hhhhcCCccccCcCCCccccCCCCEEEEEeCCCC--cCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEc
Confidence            8877766554455589999999999999994333  356677899999999999999999999999998   677  999


Q ss_pred             cCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHH
Q 005867          497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYS  573 (673)
Q Consensus       497 TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~  573 (673)
                      |||+|++|+||.|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++...     
T Consensus       420 TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~-----  493 (549)
T 3g7s_A          420 TGDVGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRG-----  493 (549)
T ss_dssp             EEEEEEECTTSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTT-----
T ss_pred             cCcEEEEcCCceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccC-----
Confidence            9999999999999999999999997 8999999999999999999999999997654   378899998764200     


Q ss_pred             cCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHH
Q 005867          574 NGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKL  653 (673)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l  653 (673)
                       .        .+.+++++++++         +             ||.|++|+.|++++.      +|+|++||++|++|
T Consensus       494 -~--------~~~~~l~~~l~~---------~-------------L~~~~~P~~i~~v~~------lP~t~~GKi~R~~L  536 (549)
T 3g7s_A          494 -K--------VDEEDIIEWVRE---------R-------------ISGYKRVREVEFVEE------LPRTASGKLLRRLL  536 (549)
T ss_dssp             -S--------CCHHHHHHHHHT---------T-------------CC-----CCCCEEEE------CC------------
T ss_pred             -c--------CCHHHHHHHHHH---------h-------------ccCcccceEEEEecc------CCCCCCcCEeHHHH
Confidence             0        123344444433         3             999999999999832      36999999999999


Q ss_pred             HHHHHHH
Q 005867          654 LIYYQVE  660 (673)
Q Consensus       654 ~~~~~~~  660 (673)
                      ++++.+.
T Consensus       537 ~~~~~~~  543 (549)
T 3g7s_A          537 REKEAEG  543 (549)
T ss_dssp             -------
T ss_pred             HHHhhcc
Confidence            9988653

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=5.6e-74  Score=638.40  Aligned_cols=522  Identities=25%  Similarity=0.314  Sum_probs=420.4

Q ss_pred             CCCCCceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCC
Q 005867           19 PSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA   98 (673)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv   98 (673)
                      |.+..+|++...+..+|    ...++.++|.++++++||++|+++.   ++.    +++||+||.++++++|++|++.|+
T Consensus         3 ~~~~~i~~~~~~~~~~p----~~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv   71 (536)
T 3ni2_A            3 PQEEFIFRSKLPDIYIP----KNLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGI   71 (536)
T ss_dssp             --CCCCBCCSSCCCCCC----SSCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccceEEecCCCCCCCC----CCCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCC
Confidence            34456777666554444    2478999999999999999999874   322    589999999999999999999999


Q ss_pred             CCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEE
Q 005867           99 EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVC  178 (673)
Q Consensus        99 ~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~  178 (673)
                      ++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++......+.......  .. .++.
T Consensus        72 ~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~~  148 (536)
T 3ni2_A           72 QQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DV-KVMC  148 (536)
T ss_dssp             CTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TC-EEEE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cc-eEEE
Confidence            99999999999999999999999999999999999999999999999999999999987766554322211  12 2333


Q ss_pred             eCCCcHHHHHHHhhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhcc
Q 005867          179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ  258 (673)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~  258 (673)
                      ++...           .....+.++...... ..+.....++++++|+|||||||.||+|.++|+++++.+........ 
T Consensus       149 ~~~~~-----------~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~-  215 (536)
T 3ni2_A          149 VDSAP-----------DGCLHFSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDN-  215 (536)
T ss_dssp             SSCCC-----------TTCEETHHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSS-
T ss_pred             ecCCC-----------CCccCHHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhcc-
Confidence            33221           124456666654322 22334567899999999999999999999999999988766543211 


Q ss_pred             ccCCCCCCcEEEEecchHhHHHHHH-hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHh
Q 005867          259 FEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE  336 (673)
Q Consensus       259 ~~~~~~~~d~~l~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~  336 (673)
                      ....+..+|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+...     
T Consensus       216 ~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----  290 (536)
T 3ni2_A          216 PNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD-----  290 (536)
T ss_dssp             CSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSC-----
T ss_pred             ccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcc-----
Confidence            0125778999999999999999865 5678999999999887 99999999999999999999999988754210     


Q ss_pred             hchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeec
Q 005867          337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGY  415 (673)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~Y  415 (673)
                                                      .+.        ..+++||.+++||+++++++.+.+++.+ ++++++.|
T Consensus       291 --------------------------------~~~--------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~Y  330 (536)
T 3ni2_A          291 --------------------------------LDK--------HDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGY  330 (536)
T ss_dssp             --------------------------------GGG--------SCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEE
T ss_pred             --------------------------------ccc--------CCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccc
Confidence                                            111        1225899999999999999999999988 89999999


Q ss_pred             CCCCCCCcccccC----CCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-
Q 005867          416 GLTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-  490 (673)
Q Consensus       416 G~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-  490 (673)
                      |+||++.+++.+.    .......+++|.|+++++++|+| ++.+ .+++.|+.|||+|+||+++.||+++++.+.+.| 
T Consensus       331 G~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~  408 (536)
T 3ni2_A          331 GMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVD-PETG-ASLPRNQPGEICIRGDQIMKGYLNDPEATSRTID  408 (536)
T ss_dssp             ECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC
T ss_pred             cccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEe-CCCC-cCCCCCCccEEEEeCcccchhhcCChhHHHhhcc
Confidence            9999998755432    11233458899999999999999 4433 456677899999999999999999999999999 


Q ss_pred             cCCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHH
Q 005867          491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDT  567 (673)
Q Consensus       491 ~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~  567 (673)
                      .+|||+|||+|++|+||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+..++..
T Consensus       409 ~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~  487 (536)
T 3ni2_A          409 KEGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQ  487 (536)
T ss_dssp             TTSCEEEEEEEEECTTSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC
T ss_pred             CCCceEcccEEEEcCCceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCC
Confidence            7899999999999999999999999999998 7999999999999999999999999986544   47899998876421


Q ss_pred             HHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccc
Q 005867          568 KKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLK  647 (673)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GK  647 (673)
                                      .+.+++++++++         +             ||.|++|+.|++++      .+|+|++||
T Consensus       488 ----------------~~~~~l~~~l~~---------~-------------l~~~~~p~~i~~v~------~lP~t~~GK  523 (536)
T 3ni2_A          488 ----------------ATEDEIKQYISK---------Q-------------VIFYKRIKRVFFIE------AIPKAPSGK  523 (536)
T ss_dssp             ----------------CCHHHHHHHHHT---------T-------------SCGGGCCSEEEECS------CCCBCTTSC
T ss_pred             ----------------CCHHHHHHHHHH---------h-------------ccCCccccEEEEEe------cCCCCCCCC
Confidence                            022334444332         3             99999999999883      346999999


Q ss_pred             cchHHHHHHHHH
Q 005867          648 KKRNKLLIYYQV  659 (673)
Q Consensus       648 v~R~~l~~~~~~  659 (673)
                      ++|++|+++|++
T Consensus       524 i~R~~L~~~~~~  535 (536)
T 3ni2_A          524 ILRKNLKEKLAG  535 (536)
T ss_dssp             BCHHHHHTC---
T ss_pred             eeHHHHHHHhcc
Confidence            999999998764

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=5.2e-73  Score=627.47  Aligned_cols=498  Identities=23%  Similarity=0.308  Sum_probs=406.6

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHH
Q 005867           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (673)
Q Consensus        39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~  118 (673)
                      +...||.++|+++|+++||++|+++.   +..    +++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus        13 ~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~   85 (517)
T 3r44_A           13 DKMKNIGWMLRQRATVSPRLQAYVEP---STD----VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLF   85 (517)
T ss_dssp             GGGGCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhCCCCeEEEeC---CcC----ceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHH
Confidence            34689999999999999999999975   321    58999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCcee
Q 005867          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (673)
Q Consensus       119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  198 (673)
                      |||+++|++++|+++.++.+++.++++.++++++|++......+....... .....++....               ..
T Consensus        86 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------~~  149 (517)
T 3r44_A           86 YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIG---------------AD  149 (517)
T ss_dssp             HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEE---------------HH
T ss_pred             HHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccC---------------cc
Confidence            999999999999999999999999999999999999987665443221111 11111111100               01


Q ss_pred             cHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhH
Q 005867          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (673)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~  278 (673)
                      .+.+..... ....+.....++++++|+|||||||.||+|.++|+++.+.+......+     ++..+|++++.+|++|.
T Consensus       150 ~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~  223 (517)
T 3r44_A          150 SLAERLRSA-AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMFHV  223 (517)
T ss_dssp             HHHHHHHHC-CCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTTSH
T ss_pred             cHHHHhhcc-CcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchHHH
Confidence            233333322 122233456789999999999999999999999999999998887777     78999999999999999


Q ss_pred             HHHHHhHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhh
Q 005867          279 LDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (673)
Q Consensus       279 ~gl~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (673)
                      +++...+.++..|+++++.+. ++..+++.++++++|++.++|+++..|.+....                         
T Consensus       224 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------------------------  278 (517)
T 3r44_A          224 AALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEF-------------------------  278 (517)
T ss_dssp             HHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHH-------------------------
T ss_pred             HHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-------------------------
Confidence            999876666669999999887 999999999999999999999999988653211                         


Q ss_pred             hcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCC-ccccC
Q 005867          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVG  436 (673)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~-~~~~~  436 (673)
                                          ....+++||.+++||+++++++.+.+.+. ++++++.||+||+++.++...... ....+
T Consensus       279 --------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~  337 (517)
T 3r44_A          279 --------------------AELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAG  337 (517)
T ss_dssp             --------------------HHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTT
T ss_pred             --------------------ccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCC
Confidence                                11223589999999999999999999887 999999999999988766544332 34458


Q ss_pred             CcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCCcEEEeecCC
Q 005867          437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK  516 (673)
Q Consensus       437 ~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~  516 (673)
                      ++|.|++++++++++ +++...  +.| .|||+|+||.++.||+++|+.+.+.|.+|||+|||+|++++||+++++||.|
T Consensus       338 ~~G~~~~~~~~~i~d-~~~~~~--~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d  413 (517)
T 3r44_A          338 SAGRATMFTDVAVRG-DDGVIR--EHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLK  413 (517)
T ss_dssp             CCBEECTTEEEEEEC-TTSCEE--SSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGG
T ss_pred             CCCcCCCCeEEEEEC-CCCCCC--CCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCc
Confidence            999999999999999 655433  334 7999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHH
Q 005867          517 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI  593 (673)
Q Consensus       517 d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (673)
                      |+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|......                 .+..++++++
T Consensus       414 d~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~-----------------~~~~~l~~~l  475 (517)
T 3r44_A          414 DMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNE-----------------VSEQQIVEYC  475 (517)
T ss_dssp             GCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTT-----------------CCHHHHHHHH
T ss_pred             CEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCC-----------------CCHHHHHHHH
Confidence            99997 8999999999999999999999999987654   2566666433221                 1334555555


Q ss_pred             HHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 005867          594 LSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  661 (673)
Q Consensus       594 ~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~  661 (673)
                      .+.                      ||.|++|+.|++++      .+|+|++||++|++|+++|.+.+
T Consensus       476 ~~~----------------------L~~~~~P~~i~~v~------~lP~t~~GKi~R~~L~~~~~~~~  515 (517)
T 3r44_A          476 GTR----------------------LARYKLPKKVIFAE------AIPRNPTGKILKTVLREQYSATV  515 (517)
T ss_dssp             HHH----------------------SCGGGSCSEEEECS------CCCBCTTCCBCHHHHHHHHGGGC
T ss_pred             HHh----------------------CCCCCCCCEEEEEC------CCCCCCCcCccHHHHHHHHHhhc
Confidence            544                      99999999999983      34699999999999999997654

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=1.3e-72  Score=631.68  Aligned_cols=510  Identities=17%  Similarity=0.153  Sum_probs=397.6

Q ss_pred             CCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHH
Q 005867           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (673)
Q Consensus        38 ~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~  117 (673)
                      +..++.+.++|+.+|+++||++|+++.   ++ .+..+++||+||.++++++|++|++.|+++||+|+++++|+++++++
T Consensus        52 ~~~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~  127 (580)
T 3etc_A           52 PENFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYC  127 (580)
T ss_dssp             CSSCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHH
T ss_pred             cccchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHH
Confidence            456788889999999999999999986   43 23347999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhh--hhhhcccccccccc-eEEEEeCCCcHHHHHHHhhCC
Q 005867          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV--KELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTG  194 (673)
Q Consensus       118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~  194 (673)
                      +|||+++|++++|+++.++.+++.++++.++++++|++.+..  ..+.... ...+.. ..++.++...          .
T Consensus       128 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~  196 (580)
T 3etc_A          128 MLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAH-AECGDIPLKKAKVGGDV----------L  196 (580)
T ss_dssp             HHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHH-HHHCSCCCEEEEESSSC----------C
T ss_pred             HHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHh-hhCCCcceEEEEeCCcc----------c
Confidence            999999999999999999999999999999999999987643  2222211 111222 3344443221          1


Q ss_pred             CceecHHHHHhcCccCCccC---CCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEE
Q 005867          195 IKPYSWDEFLHLGKVNEMEI---LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS  271 (673)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~  271 (673)
                      ..+.++.+.+.........+   ....++++++|+|||||||.||+|.++|.+++..+......+     ++..++++++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  271 (580)
T 3etc_A          197 EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHYT  271 (580)
T ss_dssp             TTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEEE
T ss_pred             cccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEEE
Confidence            23556776665543322111   246789999999999999999999999999888777655544     7889999999


Q ss_pred             ecchHhHHHHHH-hHHHhhcCcEEEEecC---CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 005867          272 FLPLAHILDRVI-EEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA  347 (673)
Q Consensus       272 ~~p~~~~~gl~~-~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (673)
                      ..|+.|..++.. ++.++..|+++++.+.   ++..+++.++++++|+++++|+++..|.+..                 
T Consensus       272 ~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-----------------  334 (580)
T 3etc_A          272 VADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-----------------  334 (580)
T ss_dssp             CCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-----------------
T ss_pred             eCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-----------------
Confidence            999999888775 5667899999988742   8999999999999999999999998875420                 


Q ss_pred             HHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCccccc
Q 005867          348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC  427 (673)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~  427 (673)
                                           .        ....+++||.+++||+++++++.++|.+.+|+++++.||+||++..++..
T Consensus       335 ---------------------~--------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~  385 (580)
T 3etc_A          335 ---------------------L--------SHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATF  385 (580)
T ss_dssp             ---------------------C-----------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECC
T ss_pred             ---------------------c--------ccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecC
Confidence                                 0        01122589999999999999999999998999999999999998776654


Q ss_pred             CCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEec-----CCccccccCCchhhhhhccCCccccCceEE
Q 005867          428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG-----KTLFSGYYKNPDLTRESIIDGWFHTGDIGQ  502 (673)
Q Consensus       428 ~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~g-----p~~~~gy~~~~~~~~~~~~~g~~~TGDlg~  502 (673)
                      +.. ....+++|+|+++++++|+| +++.  +++.|+.|||+|+|     +.++.||+++|+.+.+.|.+|||+|||+|+
T Consensus       386 ~~~-~~~~~~~G~p~~~~~v~ivd-~~g~--~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~  461 (580)
T 3etc_A          386 PWM-EPKPGSIGKPTPGYKIELMD-RDGR--LCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAW  461 (580)
T ss_dssp             TTS-CCCTTCCBEECTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEE
T ss_pred             CCC-CCCCCccccCCCCCEEEEEC-CCCC--CCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEE
Confidence            433 33458999999999999999 6654  45567899999997     789999999999999999999999999999


Q ss_pred             ECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCc
Q 005867          503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGS  579 (673)
Q Consensus       503 ~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~  579 (673)
                      +|+||+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++..            
T Consensus       462 ~d~dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~------------  528 (580)
T 3etc_A          462 MDEDGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYT------------  528 (580)
T ss_dssp             ECTTSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC------------
T ss_pred             ECCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCC------------
Confidence            9999999999999999997 6999999999999999999999999997654   47889999887531            


Q ss_pred             HHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 005867          580 FLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  659 (673)
Q Consensus       580 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~  659 (673)
                           ....+.    ++|++++++ +             ||.|++|+.|++++      .+|+|++||++|++|++++++
T Consensus       529 -----~~~~~~----~~l~~~l~~-~-------------l~~~~~P~~i~~v~------~lP~t~sGKi~R~~Lr~~~~~  579 (580)
T 3etc_A          529 -----PSDSLK----NELQDHVKN-V-------------TAPYKYPRIIEFVP------ELPKTISGKIRRVEIRDKDQS  579 (580)
T ss_dssp             -----CCHHHH----HHHHHHHHH-H-------------SCGGGCCSEEEEEC------C--------------------
T ss_pred             -----CCHHHH----HHHHHHHHh-h-------------CCCccCCeEEEEeC------CCCCCCCcCCcHHHHHhHhhc
Confidence                 112222    223333331 2             99999999999984      346999999999999998865

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=2.3e-73  Score=633.93  Aligned_cols=504  Identities=24%  Similarity=0.295  Sum_probs=384.0

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (673)
Q Consensus        40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l  119 (673)
                      ...++.++|+++++++||++|+++.   ++  +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus        16 ~~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l   90 (541)
T 1v25_A           16 EELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYF   90 (541)
T ss_dssp             CCCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence            3468999999999999999999864   21  123789999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceec
Q 005867          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (673)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  199 (673)
                      ||+++|++++|+++.++.+++.++++.++++++|++......+.... ...+....++.++....          .....
T Consensus        91 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~  159 (541)
T 1v25_A           91 AVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR-GELKTVQHFVVMDEKAP----------EGYLA  159 (541)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHG-GGCSSCCEEEESSSCCC----------TTCEE
T ss_pred             HHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHH-hhCCCccEEEEecCCCC----------ccccc
Confidence            99999999999999999999999999999999999987665443221 12233445555543211          02345


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhh--hhhhccccCCCCCCcEEEEecchHh
Q 005867          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV--DLFLDQFEDKMTVDDVYLSFLPLAH  277 (673)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~--~~~~~~~~~~~~~~d~~l~~~p~~~  277 (673)
                      +.+++.....    .....++++++|+|||||||.||+|.++|++++......  ...+     +++.+|++++.+|++|
T Consensus       160 ~~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h  230 (541)
T 1v25_A          160 YEEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFH  230 (541)
T ss_dssp             HHHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTS
T ss_pred             HHHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchh
Confidence            6655433211    134567899999999999999999999999998776542  2223     6788999999999999


Q ss_pred             HHHHHHhHHHhhcCcEEEEecC--CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 005867          278 ILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (673)
Q Consensus       278 ~~gl~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (673)
                      .+++...+.++..|+++++.+.  ++..+++.++++++|+++++|+++..|.+......                     
T Consensus       231 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------  289 (541)
T 1v25_A          231 VNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG---------------------  289 (541)
T ss_dssp             HHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT---------------------
T ss_pred             hhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC---------------------
Confidence            9998777788999999999874  89999999999999999999999999876432211                     


Q ss_pred             hhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCC----
Q 005867          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----  431 (673)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~----  431 (673)
                                              ..+++||.+++||+++++++.+.| +.+|+++++.||+||++.+++......    
T Consensus       290 ------------------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~  344 (541)
T 1v25_A          290 ------------------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLES  344 (541)
T ss_dssp             ------------------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTT
T ss_pred             ------------------------CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccc
Confidence                                    112589999999999999999999 567999999999999998776554321    


Q ss_pred             ------ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhcc-CCccccCceEEEC
Q 005867          432 ------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQIL  504 (673)
Q Consensus       432 ------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~-~g~~~TGDlg~~~  504 (673)
                            ....+++|.|+++++++|+| +++...+.+.++.|||+|+||.++.||+++++.+.+.|. +|||+|||+|++|
T Consensus       345 ~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d  423 (541)
T 1v25_A          345 LSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWD  423 (541)
T ss_dssp             SCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEEC
T ss_pred             cCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEc
Confidence                  12347899999999999999 777666555557899999999999999999999999995 9999999999999


Q ss_pred             CCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHH
Q 005867          505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFL  581 (673)
Q Consensus       505 ~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~  581 (673)
                      +||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.....              
T Consensus       424 ~dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~--------------  488 (541)
T 1v25_A          424 EEGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKP--------------  488 (541)
T ss_dssp             TTCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC---------------------
T ss_pred             CCceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCCC--------------
Confidence            99999999999999996 8999999999999999999999999997654   47888888762110              


Q ss_pred             HHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 005867          582 ELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  660 (673)
Q Consensus       582 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~  660 (673)
                         +.+++++++.+        .+             ||.|++|+.|++++      .+|+|++||++|++|+++|.+.
T Consensus       489 ---~~~~l~~~~~~--------~~-------------L~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~~~~~~  537 (541)
T 1v25_A          489 ---TPEELNEHLLK--------AG-------------FAKWQLPDAYVFAE------EIPRTSAGKFLKRALREQYKNY  537 (541)
T ss_dssp             -----------------------C-------------CCTTTSCSBC--------------------CCTTHHHHSTTS
T ss_pred             ---CHHHHHHHHHh--------cc-------------CccccCCcEEEEeC------CCCCCCccCeeHHHHHHHHHHh
Confidence               12222322222        13             99999999999883      3469999999999999987654

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=2.9e-72  Score=620.09  Aligned_cols=489  Identities=21%  Similarity=0.247  Sum_probs=396.1

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      |+|+.++|+++|+++||++|+++.   ++.    +++||+||.+++.++|++|++.|+++||+|+++++|++++++++||
T Consensus         1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA   73 (504)
T 1t5h_X            1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA   73 (504)
T ss_dssp             CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            578999999999999999999864   322    6899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEE--cchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCcee
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV--QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  198 (673)
                      |+++|++++|+++.++.+++.++++.++++++|+  +......+....    .... ++                     
T Consensus        74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~---------------------  127 (504)
T 1t5h_X           74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-II---------------------  127 (504)
T ss_dssp             HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EE---------------------
T ss_pred             HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eE---------------------
Confidence            9999999999999999999999999999999999  665444331111    1111 11                     


Q ss_pred             cHHHHHhcCc----cCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCC--CCCcEEEEe
Q 005867          199 SWDEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSF  272 (673)
Q Consensus       199 ~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~--~~~d~~l~~  272 (673)
                      .+.++.....    ..........++++++|+|||||||.||+|.++|+++.+.+......+     ++  ..++++++.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~  202 (504)
T 1t5h_X          128 FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL  202 (504)
T ss_dssp             EGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred             EecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence            1222221110    111111345689999999999999999999999999999888776655     55  788999999


Q ss_pred             cchHhHHHHH-HhHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 005867          273 LPLAHILDRV-IEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK  350 (673)
Q Consensus       273 ~p~~~~~gl~-~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (673)
                      +|++|.+|+. ..+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+......                
T Consensus       203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------  266 (504)
T 1t5h_X          203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG----------------  266 (504)
T ss_dssp             SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT----------------
T ss_pred             cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc----------------
Confidence            9999999985 46778999999999887 99999999999999999999999998865321000                


Q ss_pred             HHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCC
Q 005867          351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD  430 (673)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~  430 (673)
                                         .        ...+++||.+++||+++++++.+.|.+.++..+++.||+||++.. ....  
T Consensus       267 -------------------~--------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~-~~~~--  316 (504)
T 1t5h_X          267 -------------------S--------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNS-LYMR--  316 (504)
T ss_dssp             -------------------C--------CCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEEE-EEEE--
T ss_pred             -------------------c--------cccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccccc-cccc--
Confidence                               0        001258999999999999999999999999999999999999432 2221  


Q ss_pred             CccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEe-cCCccccccCCchhhhhhccCCccccCceEEECCCCcE
Q 005867          431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV  509 (673)
Q Consensus       431 ~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~-gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l  509 (673)
                       ....+++|.|.+++++++++.+.+...+++.|+.|||+|+ |+.++.||+++++.+.+.|.+|||+|||+|++|+||++
T Consensus       317 -~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l  395 (504)
T 1t5h_X          317 -QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTV  395 (504)
T ss_dssp             -SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCE
T ss_pred             -CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceE
Confidence             1233789999999999999943333356777889999999 99999999999999999999999999999999999999


Q ss_pred             EEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhcc
Q 005867          510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL  586 (673)
Q Consensus       510 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (673)
                      +++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+++++..                .+.
T Consensus       396 ~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~----------------~~~  458 (504)
T 1t5h_X          396 RILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGET----------------LSA  458 (504)
T ss_dssp             EEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCC----------------CCH
T ss_pred             EEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcC----------------cCH
Confidence            999999999997 8999999999999999999999999997654   47999999876420                022


Q ss_pred             HHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 005867          587 VQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  658 (673)
Q Consensus       587 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~  658 (673)
                      ++        |.++++.++             ||.|++|+.|++++      .+|+|++||++|++|+++|+
T Consensus       459 ~~--------l~~~~~~~~-------------L~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~~~~  503 (504)
T 1t5h_X          459 DA--------LDTFCRSSE-------------LADFKRPKRYFILD------QLPKNALNKVLRRQLVQQVS  503 (504)
T ss_dssp             HH--------HHHHHHTSS-------------CCGGGSCSEEEECS------CCCBCTTSCBCHHHHHHHHC
T ss_pred             HH--------HHHHHhhcc-------------CcccccceEEEEhh------hCCCCCCCCEeHHHHHHHhc
Confidence            22        333333224             99999999999984      34699999999999998874

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=1.1e-72  Score=629.96  Aligned_cols=525  Identities=24%  Similarity=0.269  Sum_probs=334.9

Q ss_pred             CCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc
Q 005867           32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC  111 (673)
Q Consensus        32 ~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~  111 (673)
                      .+.|..+....|+.++|.++++++||++|++...  ++..+  +++||+||.++++++|++|++.|+++||+|+++++|+
T Consensus        10 ~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~   85 (550)
T 3rix_A           10 GPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHIE--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENS   85 (550)
T ss_dssp             CCCCSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTTC--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSC
T ss_pred             CCCCCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCCC--cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc
Confidence            3445566667899999999999999999986221  22111  6899999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHh
Q 005867          112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV  191 (673)
Q Consensus       112 ~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  191 (673)
                      +++++++|||+++|++++|+++.++.+++.++++.++++++|+++.....+.... ...+....++.++....       
T Consensus        86 ~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------  157 (550)
T 3rix_A           86 LQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQ-KKLPIIQKIIIMDSKTD-------  157 (550)
T ss_dssp             TTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHH-HHCTTCCEEEETTCSSC-------
T ss_pred             ccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHH-hhCCCcceEEEEcCCcc-------
Confidence            9999999999999999999999999999999999999999999998766654322 22334455555544321       


Q ss_pred             hCCCceecHHHHHhcCccC------CccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCC
Q 005867          192 QTGIKPYSWDEFLHLGKVN------EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV  265 (673)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~  265 (673)
                        .....++.++.......      ..+.....++++++|+|||||||.||+|.++|+++...+......+  ...++.+
T Consensus       158 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~  233 (550)
T 3rix_A          158 --YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIP  233 (550)
T ss_dssp             --BTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCT
T ss_pred             --ccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCC
Confidence              11244566655432211      1111223467899999999999999999999999998877655431  1125778


Q ss_pred             CcEEEEecchHhHHHHHHhHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHH
Q 005867          266 DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI  344 (673)
Q Consensus       266 ~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~  344 (673)
                      ++++++.+|++|.+|+...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+...             
T Consensus       234 ~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------  300 (550)
T 3rix_A          234 DTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL-------------  300 (550)
T ss_dssp             TCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCG-------------
T ss_pred             CcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcc-------------
Confidence            9999999999999999888888999999999877 99999999999999999999999998865211             


Q ss_pred             HHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCc-eeeecCCCCCCCc
Q 005867          345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGP  423 (673)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~-v~~~YG~tE~~~~  423 (673)
                                              .+..        .+++||.+++||+++++++.+.|.+.++.. +++.||+||+++.
T Consensus       301 ------------------------~~~~--------~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~  348 (550)
T 3rix_A          301 ------------------------IDKY--------DLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSA  348 (550)
T ss_dssp             ------------------------GGGS--------CCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSE
T ss_pred             ------------------------cccc--------CcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccc
Confidence                                    1111        125899999999999999999999999875 9999999999988


Q ss_pred             ccccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCceEE
Q 005867          424 TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ  502 (673)
Q Consensus       424 ~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~  502 (673)
                      ++....... ..+++|.|+++++++|+| ++++ .+++.|+.|||+|+||+++.||+++++.+...| .+|||+|||+|+
T Consensus       349 ~~~~~~~~~-~~~~vG~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~  425 (550)
T 3rix_A          349 ILITPEGDD-KPGAVGKVVPFFEAKVVD-LDTG-KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAY  425 (550)
T ss_dssp             EEECCTTCC-CTTEEEEECTTCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEE
T ss_pred             eecCCCCCC-CCCCcccccCCcEEEEEe-CCCC-cCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEE
Confidence            776655443 448999999999999999 4333 456677899999999999999999999999999 799999999999


Q ss_pred             ECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCc
Q 005867          503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGS  579 (673)
Q Consensus       503 ~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~  579 (673)
                      +|+||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++...           
T Consensus       426 ~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~-----------  493 (550)
T 3rix_A          426 WDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTM-----------  493 (550)
T ss_dssp             ECTTCCEEEC----------------------------------------------------------------------
T ss_pred             EeCCceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCC-----------
Confidence            9999999999999999997 8999999999999999999999999997654   468888888764310           


Q ss_pred             HHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeee-EEEEecCCCCCCCCccccccccchHHHHHHHH
Q 005867          580 FLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIK-GVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  658 (673)
Q Consensus       580 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~-~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~  658 (673)
                           +.+++++++.+.                      |+.|..|. .|+++      +.+|+|++||++|++|++++.
T Consensus       494 -----~~~~l~~~~~~~----------------------l~~~~~~~~~i~~v------~~lP~t~~GKi~r~~L~~~~~  540 (550)
T 3rix_A          494 -----TEKEIVDYVASQ----------------------VTTAKKLRGGVVFV------DEVPKGLTGKLDARKIREILI  540 (550)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----CHHHHHHHHHHh----------------------cccccccCCceEEE------eecCCCCCcceeHHHHHHHHH
Confidence                 223333333332                      88876554 57776      334699999999999999998


Q ss_pred             HHHHHHH
Q 005867          659 VEIDQLY  665 (673)
Q Consensus       659 ~~~~~ly  665 (673)
                      +..+.-+
T Consensus       541 ~~~~~~~  547 (550)
T 3rix_A          541 KAKKGGK  547 (550)
T ss_dssp             -------
T ss_pred             hhccccc
Confidence            7665543

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=1.1e-72  Score=628.81  Aligned_cols=500  Identities=15%  Similarity=0.156  Sum_probs=333.5

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      ..||.++|+++|+++||++|+++.    +     +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus        29 ~~tl~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA   99 (544)
T 3o83_A           29 DQPLTRILTVGVQSHPHSLAIICG----E-----RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA   99 (544)
T ss_dssp             CCCTTHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCceEEEcC----C-----CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence            478999999999999999999964    3     6899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhh----hhhcccccccccceEEEEeCCCcHHHHHHHhhCCCc
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  196 (673)
                      |+++|++++|+++.++.+++.++++.++++++|++.....    ...............++..+....            
T Consensus       100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  167 (544)
T 3o83_A          100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------  167 (544)
T ss_dssp             HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred             HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence            9999999999999999999999999999999999876431    111111112223344444443211            


Q ss_pred             eecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchH
Q 005867          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (673)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~  276 (673)
                      ...+.++...............++++++|+|||||||.||+|.++|+++.+.+......+     ++.++|++++.+|++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~  242 (544)
T 3o83_A          168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP  242 (544)
T ss_dssp             SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred             ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence            123444444432222233456789999999999999999999999999999999888777     789999999999999


Q ss_pred             hHHHHHH--hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 005867          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (673)
Q Consensus       277 ~~~gl~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (673)
                      |.+++..  .+.++..|+++++.+. ++..+++.++++++|+++++|+++..+++.......                  
T Consensus       243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------  304 (544)
T 3o83_A          243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKD------------------  304 (544)
T ss_dssp             SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHH------------------
T ss_pred             eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccc------------------
Confidence            9999874  6778999999999887 999999999999999999999999988764321111                  


Q ss_pred             HHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCcc
Q 005867          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (673)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~  433 (673)
                                         .        +++||.+++||+++++++.+.+.+.+|+++++.||+||++..+.........
T Consensus       305 -------------------~--------~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~  357 (544)
T 3o83_A          305 -------------------Q--------IQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQ  357 (544)
T ss_dssp             -------------------H--------HTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred             -------------------c--------CCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhh
Confidence                               1        1489999999999999999999999999999999999998655544333333


Q ss_pred             ccCCcCCCc-cceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCceEEECCCCcEEE
Q 005867          434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI  511 (673)
Q Consensus       434 ~~~~~G~~~-~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~  511 (673)
                      ...++|.|+ ++++++|+| +++.  +++.|+.|||+|+||+++.||+++++.+...| .+|||+|||+|++|+||++++
T Consensus       358 ~~~~~G~p~~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~  434 (544)
T 3o83_A          358 IFTTQGRPISSDDEIKIVD-EQYR--EVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRV  434 (544)
T ss_dssp             HHHCCCEESCTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEE
T ss_pred             ccCCCceecCCCcEEEEEC-CCCC--CCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEE
Confidence            447899996 899999999 6555  45667899999999999999999999999999 799999999999999999999


Q ss_pred             eecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHH
Q 005867          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  588 (673)
Q Consensus       512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (673)
                      +||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+..+...                 ...+
T Consensus       435 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~-----------------~~~~  496 (544)
T 3o83_A          435 VGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPEL-----------------KAVV  496 (544)
T ss_dssp             EEEEC---------------------------------------------------------------------------
T ss_pred             EeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCC-----------------CHHH
Confidence            9999999996 8999999999999999999999999997654   37888888765321                 2222


Q ss_pred             HHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 005867          589 LQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  659 (673)
Q Consensus       589 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~  659 (673)
                      +++++.+        .+             ||.|++|+.|++++      .+|+|++||++|++|++++.+
T Consensus       497 l~~~~~~--------~~-------------l~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~~~~~  540 (544)
T 3o83_A          497 LRRHLME--------LG-------------IAQYKLPDQIKLIE------SLPLTAVGKVDKKQLRSILNT  540 (544)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             HHHHHHh--------CC-------------CCcccCCcEEEEec------cCCCCCCCCCcHHHHHHHHhh
Confidence            3332222        23             99999999999883      346999999999999998865

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=1.3e-71  Score=620.53  Aligned_cols=510  Identities=24%  Similarity=0.279  Sum_probs=408.9

Q ss_pred             CCcHHH-HHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867           41 LNTAWD-IFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (673)
Q Consensus        41 ~~tl~~-~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l  119 (673)
                      +.++.+ +|..+++++ |++|+++.   ++.    +++||+||.++++++|.+|++.|+++||+|+++++|++++++++|
T Consensus        24 ~~~l~~~~l~~~~~~~-~~~A~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l   95 (548)
T 2d1s_A           24 SAGTQLRKYMERYAKL-GAIAFTNA---VTG----VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVI   95 (548)
T ss_dssp             CHHHHHHHHHHHHHHH-TCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred             cCcHHHHHHHhhhccc-CCceEEEc---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Confidence            468999 898899999 99999863   221    589999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceec
Q 005867          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (673)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  199 (673)
                      ||+++|++++|+++.++.+++.++++.++++++|+++.....+.... ...+....++.++....         ......
T Consensus        96 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~  165 (548)
T 2d1s_A           96 AGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQ-KTVTTIKTIVILDSKVD---------YRGYQC  165 (548)
T ss_dssp             HHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHH-HHSTTCCEEEETTCSSC---------BTTBCB
T ss_pred             HHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHh-cCCCCCCEEEEeCCccc---------cccccc
Confidence            99999999999999999999999999999999999987665543221 11121234444443210         001234


Q ss_pred             HHHHHhcCccCCccCCCC------CCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEec
Q 005867          200 WDEFLHLGKVNEMEILPP------QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL  273 (673)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~------~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~  273 (673)
                      |+++.........+....      .++++++++|||||||.||+|.++|+++.+.+......+.  ..++.++|++++.+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~  243 (548)
T 2d1s_A          166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY--GNQVSPGTAVLTVV  243 (548)
T ss_dssp             HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT--SCCCCTTCEEEECS
T ss_pred             HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh--ccCCCccceEEEec
Confidence            666654431110111111      2389999999999999999999999999988877655410  11678899999999


Q ss_pred             chHhHHHHHHh-HHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 005867          274 PLAHILDRVIE-EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  351 (673)
Q Consensus       274 p~~~~~gl~~~-~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (673)
                      |++|.+++... +.++ .|+++++.+. ++..+++.++++++|+++++|+++..|.+...                    
T Consensus       244 p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------  302 (548)
T 2d1s_A          244 PFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSEL--------------------  302 (548)
T ss_dssp             CTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC--------------------
T ss_pred             cHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc--------------------
Confidence            99999998764 4556 9999999876 99999999999999999999999998764210                    


Q ss_pred             HHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCCC
Q 005867          352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD  430 (673)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~  430 (673)
                                       .+..        .+++||.+++||+++++++.+.+.+.+ ++++++.||+||++..++.....
T Consensus       303 -----------------~~~~--------~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~  357 (548)
T 2d1s_A          303 -----------------LNKY--------DLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEG  357 (548)
T ss_dssp             -----------------GGGS--------CCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT
T ss_pred             -----------------cccc--------cccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcc
Confidence                             0111        125899999999999999999999988 68899999999999877664433


Q ss_pred             CccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCceEEECCCCcE
Q 005867          431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVV  509 (673)
Q Consensus       431 ~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l  509 (673)
                       ....+++|.|+++++++|+|.+++  .+++.|+.|||+|+||.++.||+++++.+...| .+|||+|||+|++|+||++
T Consensus       358 -~~~~~~~G~~~~~~~~~i~d~~~~--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l  434 (548)
T 2d1s_A          358 -DDKPGASGKVVPLFKAKVIDLDTK--KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHF  434 (548)
T ss_dssp             -CCCTTCCBEECTTCEEEEECTTTC--CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCE
T ss_pred             -cCCCCCCCccCCCceEEEEeCCcC--ccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeE
Confidence             234489999999999999993333  456677899999999999999999999999999 6899999999999999999


Q ss_pred             EEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhcc
Q 005867          510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL  586 (673)
Q Consensus       510 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (673)
                      +++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+++++..                .+.
T Consensus       435 ~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~----------------~~~  497 (548)
T 2d1s_A          435 FIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKN----------------MTE  497 (548)
T ss_dssp             EEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC----------------CCH
T ss_pred             EEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCC----------------CCH
Confidence            999999999997 8999999999999999999999999997654   47889999876420                022


Q ss_pred             HHHHHHHHHHHHHHHHhcccccccccccccccCccceeee-EEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHH
Q 005867          587 VQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIK-GVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL  664 (673)
Q Consensus       587 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~-~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~~~l  664 (673)
                      +++++++++         +             |+.|++|+ .|++++      .+|+|++||++|++|+++|.+.|+++
T Consensus       498 ~~l~~~~~~---------~-------------l~~~~~p~~~i~~v~------~lP~t~~GKi~r~~L~~~~~~~i~~~  548 (548)
T 2d1s_A          498 KEVMDYVAS---------Q-------------VSNAKRLRGGVRFVD------EVPKGLTGKIDGRAIREILKKPVAKM  548 (548)
T ss_dssp             HHHHHHHHT---------T-------------SCGGGSCTTCEEECS------SCCBCTTSCBCHHHHHHHHHSCC---
T ss_pred             HHHHHHHHH---------h-------------ccccccccccEEEcc------CCCCCCcchhHHHHHHHHHhhhhhcC
Confidence            334433332         3             99999999 898883      34699999999999999998887764

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=4.2e-72  Score=618.07  Aligned_cols=491  Identities=23%  Similarity=0.305  Sum_probs=398.0

Q ss_pred             HHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHHHhcC
Q 005867           46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALS  125 (673)
Q Consensus        46 ~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~~~~G  125 (673)
                      ++|+++++++|+++|+..... ++     +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|
T Consensus         4 ~l~~~~a~~~p~~~a~~~~~~-~~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G   77 (503)
T 4fuq_A            4 NLFARLFDKLDDPHKLAIETA-AG-----DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG   77 (503)
T ss_dssp             CHHHHHHSCCSCTTSEEEEET-TC-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHhCCCCceEEEecC-CC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence            578899999999999986411 22     589999999999999999999999999999999999999999999999999


Q ss_pred             CeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecHHHHHh
Q 005867          126 LICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH  205 (673)
Q Consensus       126 ~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (673)
                      ++++|+++.++.+++.++++.++++++|++......+....... .  ..+..+.....             ..+.+...
T Consensus        78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-------------~~~~~~~~  141 (503)
T 4fuq_A           78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-G--ATVETLGPDGR-------------GSLTDAAA  141 (503)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH-T--CEEEECCTTSC-------------SHHHHHHH
T ss_pred             cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc-C--ceEEEecCCcc-------------cccchhhh
Confidence            99999999999999999999999999999987654332211111 1  12233322110             11222221


Q ss_pred             cCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHH-h
Q 005867          206 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-E  284 (673)
Q Consensus       206 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~-~  284 (673)
                      .. ..........++++++|+|||||||.||+|.++|+++.+.+......+     ++.++|++++.+|++|.+|+.. .
T Consensus       142 ~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~  215 (503)
T 4fuq_A          142 GA-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVAS  215 (503)
T ss_dssp             TS-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCH
T ss_pred             cC-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHH
Confidence            11 122233456789999999999999999999999999999998887777     7899999999999999998764 5


Q ss_pred             HHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcC
Q 005867          285 EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR  363 (673)
Q Consensus       285 ~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (673)
                      +.+++.|+++++.+. ++..+++.++  ++|+++++|+++..+++...                                
T Consensus       216 ~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~--------------------------------  261 (503)
T 4fuq_A          216 NVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR--------------------------------  261 (503)
T ss_dssp             HHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------
T ss_pred             HHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------
Confidence            678899999998887 9999999998  89999999999998764211                                


Q ss_pred             CcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCccccCCcCCCcc
Q 005867          364 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV  443 (673)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~  443 (673)
                           ..        ...++++|.+++||+++++++.+.|.+.+|.++++.||+||++..++... ......+++|+|++
T Consensus       262 -----~~--------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~  327 (503)
T 4fuq_A          262 -----LT--------KETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALP  327 (503)
T ss_dssp             -----CS--------TTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-SSCCCTTEEEEBCT
T ss_pred             -----cc--------ccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-CCCCcCCccccCCC
Confidence                 00        01125899999999999999999999999999999999999987755333 23344588999999


Q ss_pred             ceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCceEEECCCCcEEEeecCCCeEEcC
Q 005867          444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS  522 (673)
Q Consensus       444 ~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~  522 (673)
                      +++++|+| ++.+ .+++.|+.|||+|+||+++.||+++++.+.+.| .+|||+|||+|++|+||.++++||.||+||+ 
T Consensus       328 ~~~~~i~d-~~~g-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-  404 (503)
T 4fuq_A          328 GVSARVTD-PETG-KELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT-  404 (503)
T ss_dssp             TCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-
T ss_pred             CeEEEEEE-CCCC-CCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-
Confidence            99999999 3333 456677899999999999999999999999999 5899999999999999999999999999997 


Q ss_pred             CceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHH
Q 005867          523 QGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKN  599 (673)
Q Consensus       523 ~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  599 (673)
                      +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++..                .+..++++++++    
T Consensus       405 ~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~----------------~~~~~l~~~l~~----  464 (503)
T 4fuq_A          405 GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGAT----------------IDEAQVLHGLDG----  464 (503)
T ss_dssp             TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC----------------CCHHHHHHHHBT----
T ss_pred             CCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCC----------------CCHHHHHHHHHh----
Confidence            7999999999999999999999999986644   37889998876431                022233333322    


Q ss_pred             HHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 005867          600 AAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  659 (673)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~  659 (673)
                           +             ||.|++|+.|++++      .+|+|++||++|++|+++|++
T Consensus       465 -----~-------------L~~~~~P~~i~~v~------~lP~t~~GKi~R~~L~~~~~~  500 (503)
T 4fuq_A          465 -----Q-------------LAKFKMPKKVIFVD------DLPRNTMGKVQKNVLRETYKD  500 (503)
T ss_dssp             -----T-------------BCGGGCCSEEEEES------CCCBCTTSCBCHHHHHHHTTT
T ss_pred             -----h-------------cccCCCCCEEEEEC------CCCCCcccceeHHHHHHHHHH
Confidence                 3             99999999999983      346999999999999998865

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=1.8e-71  Score=630.93  Aligned_cols=524  Identities=17%  Similarity=0.191  Sum_probs=414.6

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (673)
Q Consensus        40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l  119 (673)
                      ..+++.++|+++++++||++|+++.   +...+..+++||+||.++++++|++|++.|+++||+|+|+++|++++++++|
T Consensus        74 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~l  150 (652)
T 1pg4_A           74 TLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAML  150 (652)
T ss_dssp             EECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             ChhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            3578999999999999999999985   3333445789999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhh---------hhhcccccc-cccceEEEEeCCCcHHHHHH
Q 005867          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRS-AQRLRVMVCFTSLTAEQKEM  189 (673)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~  189 (673)
                      ||+++|++++|+++.++.+++.+++++++++++|+++....         .+....... ...+..++.++......   
T Consensus       151 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---  227 (652)
T 1pg4_A          151 ACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI---  227 (652)
T ss_dssp             HHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC---
T ss_pred             HHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcc---
Confidence            99999999999999999999999999999999999876421         111111000 01234455554321000   


Q ss_pred             HhhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHh-hhhhhhccccCCCCCCcE
Q 005867          190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS-GVDLFLDQFEDKMTVDDV  268 (673)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~-~~~~~~~~~~~~~~~~d~  268 (673)
                       .........|++++..... ........++++++|+|||||||.||||+++|++++..+. .....+     ++.++|+
T Consensus       228 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~  300 (652)
T 1pg4_A          228 -DWQEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDI  300 (652)
T ss_dssp             -CCCBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCE
T ss_pred             -cccCCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCE
Confidence             0001123567777654321 1223345689999999999999999999999999887664 333444     7889999


Q ss_pred             EEEecchHhHHHHH-HhHHHhhcCcEEEEecC-----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHH
Q 005867          269 YLSFLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR  342 (673)
Q Consensus       269 ~l~~~p~~~~~gl~-~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~  342 (673)
                      +++.+|++|..|+. .++.++..|+++++++.     ++..+++.++++++|+++++|+++..|.+...+.         
T Consensus       301 ~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------  371 (652)
T 1pg4_A          301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA---------  371 (652)
T ss_dssp             EEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGG---------
T ss_pred             EEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccc---------
Confidence            99999999999984 57788999999999874     7899999999999999999999999876421100         


Q ss_pred             HHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcC---CceeeecCCCC
Q 005867          343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTE  419 (673)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g---~~v~~~YG~tE  419 (673)
                                                .+.        ..+++||.+++||+++++++.+++.+.+|   +++++.||+||
T Consensus       372 --------------------------~~~--------~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE  417 (652)
T 1pg4_A          372 --------------------------IEG--------TDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE  417 (652)
T ss_dssp             --------------------------TTT--------CCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGG
T ss_pred             --------------------------ccc--------CCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcc
Confidence                                      000        12359999999999999999999999888   89999999999


Q ss_pred             CCCcccccCCC-CccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEec--CCccccccCCchhhhhhc---cCC
Q 005867          420 TCGPTTVCFPD-EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDG  493 (673)
Q Consensus       420 ~~~~~~~~~~~-~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~g--p~~~~gy~~~~~~~~~~~---~~g  493 (673)
                      +++.++....+ .....+++|+|++|++++|+| +++.  +++.|+.|||+|+|  |+++.|||++++.+...|   .+|
T Consensus       418 ~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~--~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g  494 (652)
T 1pg4_A          418 TGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGH--PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKN  494 (652)
T ss_dssp             GSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCC--BCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTT
T ss_pred             cccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCC--CcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCC
Confidence            99876655432 234458999999999999999 6555  45556899999999  789999999999988876   379


Q ss_pred             ccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHH
Q 005867          494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKW  570 (673)
Q Consensus       494 ~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~  570 (673)
                      ||+|||+|++|+||+|+|+||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+++++..   
T Consensus       495 ~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~---  570 (652)
T 1pg4_A          495 MYFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEE---  570 (652)
T ss_dssp             SEEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC---
T ss_pred             EEECCcEEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCC---
Confidence            9999999999999999999999999998 7999999999999999999999999997643   47999999886531   


Q ss_pred             HHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccch
Q 005867          571 AYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKR  650 (673)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R  650 (673)
                                    ..+++.    ++|++++++ +             ||.|++|+.|++++      .+|+|++||++|
T Consensus       571 --------------~~~~~~----~~l~~~l~~-~-------------l~~~~~P~~i~~v~------~lP~T~sGKi~R  612 (652)
T 1pg4_A          571 --------------PSPELY----AEVRNWVRK-E-------------IGPLATPDVLHWTD------SLPKTRSGKIMR  612 (652)
T ss_dssp             --------------CCHHHH----HHHHHHHHH-H-------------TCGGGCCSEEEECS------CCCBCTTSCBCH
T ss_pred             --------------CCHHHH----HHHHHHHHH-h-------------CCCCcCCeEEEEcC------CCCCCCCccchH
Confidence                          111222    223333331 2             99999999999983      346999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 005867          651 NKLLIYYQVEIDQL  664 (673)
Q Consensus       651 ~~l~~~~~~~~~~l  664 (673)
                      ++|++.+.++++.+
T Consensus       613 ~~L~~~~~~~~~~~  626 (652)
T 1pg4_A          613 RILRKIAAGDTSNL  626 (652)
T ss_dssp             HHHHHHHHTC----
T ss_pred             HHHHHHHhCCCCCC
Confidence            99999998765444

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=2.3e-70  Score=612.45  Aligned_cols=510  Identities=19%  Similarity=0.195  Sum_probs=411.7

Q ss_pred             CCCCCcHHHHHHHHHHh-----CCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCc
Q 005867           38 DSDLNTAWDIFSMSVQK-----YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANC  111 (673)
Q Consensus        38 ~~~~~tl~~~l~~~a~~-----~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~-gv~~gd~V~i~~~~~  111 (673)
                      +..++++.++|++++++     +||++|+++.   ++ .+..+++||+||.++++++|++|++. |+++||+|+++++|+
T Consensus        34 ~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~  109 (570)
T 3c5e_A           34 PAKFNFASDVLDHWADMEKAGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRV  109 (570)
T ss_dssp             CSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSC
T ss_pred             CccccHHHHHHHHHHhhccccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCC
Confidence            34567889999999999     9999999975   42 12237899999999999999999998 999999999999999


Q ss_pred             HhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHh
Q 005867          112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV  191 (673)
Q Consensus       112 ~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  191 (673)
                      +++++++|||+++|++++|+++.++.+++.++++.++++++|+++.....+.... ...+.++.++.++....       
T Consensus       110 ~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------  181 (570)
T 3c5e_A          110 PEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVA-SECPSLRIKLLVSEKSC-------  181 (570)
T ss_dssp             HHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHG-GGCTTCCEEEEESSSCC-------
T ss_pred             HHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHh-hcCCceeEEEEecccCc-------
Confidence            9999999999999999999999999999999999999999999987665543221 12233444555543210       


Q ss_pred             hCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHH--HHhhhhhhhccccCCCCCCcEE
Q 005867          192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT--FVSGVDLFLDQFEDKMTVDDVY  269 (673)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~--~~~~~~~~~~~~~~~~~~~d~~  269 (673)
                         .....+.+++..... ........++++++|+|||||||.||+|.++|+ ++.  ..... ..+     ++..+|++
T Consensus       182 ---~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-----~~~~~d~~  250 (570)
T 3c5e_A          182 ---DGWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-----GLQASDIM  250 (570)
T ss_dssp             ---TTSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-----SCCTTCEE
T ss_pred             ---cccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-----CCCCCceE
Confidence               123456666554322 122234578999999999999999999999999 444  33332 334     68899999


Q ss_pred             EEecchHhHHHHH-HhHHHhhcCcEEEEecC---CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHH
Q 005867          270 LSFLPLAHILDRV-IEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF  345 (673)
Q Consensus       270 l~~~p~~~~~gl~-~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~  345 (673)
                      ++.+|++|.+++. .++.++..|+++++.+.   ++..+++.++++++|+++++|+++..|.+..               
T Consensus       251 ~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---------------  315 (570)
T 3c5e_A          251 WTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD---------------  315 (570)
T ss_dssp             EECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC---------------
T ss_pred             EEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc---------------
Confidence            9999999999987 46778999999998863   8999999999999999999999999875420               


Q ss_pred             HHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCccc
Q 005867          346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTT  425 (673)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~  425 (673)
                                             .+        ...+++||.+++||+++++++.+.|.+.+|+++++.||+||++..++
T Consensus       316 -----------------------~~--------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~  364 (570)
T 3c5e_A          316 -----------------------LS--------SYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCM  364 (570)
T ss_dssp             -----------------------TT--------TCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEE
T ss_pred             -----------------------cc--------ccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhccccee
Confidence                                   00        01125899999999999999999999988999999999999997665


Q ss_pred             ccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEe-----cCCccccccCCchhhhhhccCCccccCce
Q 005867          426 VCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-----GKTLFSGYYKNPDLTRESIIDGWFHTGDI  500 (673)
Q Consensus       426 ~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~-----gp~~~~gy~~~~~~~~~~~~~g~~~TGDl  500 (673)
                      ..... ....+++|.|+++++++|+| +++.  +++.|+.|||+|+     |++++.||+++++.+.+.|.+|||+|||+
T Consensus       365 ~~~~~-~~~~~~vG~p~~~~~v~i~d-~~g~--~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDl  440 (570)
T 3c5e_A          365 VSKTM-KIKPGYMGTAASCYDVQIID-DKGN--VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDR  440 (570)
T ss_dssp             CCTTS-CCCTTCCCEECTTCCEEEEC-TTSC--BCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEE
T ss_pred             cCccc-ccCCCcccccCCCceEEEEC-CCCC--CCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCcccccee
Confidence            44332 23448999999999999999 6654  5566789999999     99999999999999999999999999999


Q ss_pred             EEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCC
Q 005867          501 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHA  577 (673)
Q Consensus       501 g~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~  577 (673)
                      |++|+||+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++...         
T Consensus       441 g~~d~dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~---------  510 (570)
T 3c5e_A          441 GIKDEDGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLS---------  510 (570)
T ss_dssp             EEECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTT---------
T ss_pred             EEEcCCceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccC---------
Confidence            999999999999999999997 8999999999999999999999999997654   478899998764310         


Q ss_pred             CcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 005867          578 GSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  657 (673)
Q Consensus       578 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~  657 (673)
                      .      ....+    .++|+++++ ++             ||.|++|+.|++++.      +|+|++||++|++|++.+
T Consensus       511 ~------~~~~~----~~~l~~~l~-~~-------------L~~~~~P~~i~~v~~------lP~t~~GKi~R~~L~~~~  560 (570)
T 3c5e_A          511 H------DPEQL----TKELQQHVK-SV-------------TAPYKYPRKIEFVLN------LPKTVTGKIQRAKLRDKE  560 (570)
T ss_dssp             S------CHHHH----HHHHHHHHH-HH-------------SCGGGSCSEEEEESC------CCBCTTCCBCHHHHHHHH
T ss_pred             c------chHHH----HHHHHHHHH-hh-------------CccccCCcEEEEecc------CCCCCCcCCcHHHHHHHH
Confidence            0      11112    233333333 23             999999999999843      469999999999999887


Q ss_pred             HHH
Q 005867          658 QVE  660 (673)
Q Consensus       658 ~~~  660 (673)
                      .+.
T Consensus       561 ~~~  563 (570)
T 3c5e_A          561 WKM  563 (570)
T ss_dssp             TC-
T ss_pred             Hhh
Confidence            543

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=1.2e-71  Score=616.04  Aligned_cols=494  Identities=22%  Similarity=0.265  Sum_probs=326.1

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHH
Q 005867           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (673)
Q Consensus        39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~  118 (673)
                      ....||.++|+++|+++||++|+++.    +     +++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus         3 ~~~~tl~~~l~~~a~~~pd~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~   73 (509)
T 3ivr_A            3 LHDFTLADVYRRNAALFPDRTAFMVD----G-----VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELI   73 (509)
T ss_dssp             TTCCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHCCCceEEEEC----C-----cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            35689999999999999999999874    3     68999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCcee
Q 005867          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (673)
Q Consensus       119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  198 (673)
                      |||+++|++++|+++.++.+++.++++.++++++|++......+.... ........++.+++..              .
T Consensus        74 lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------~  138 (509)
T 3ivr_A           74 GAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL-PSLGGVKKAYAIGDGS--------------G  138 (509)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHG-GGCSSCCEEEESSCCC--------------S
T ss_pred             HHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhh-cccCCceEEEEcCCCC--------------c
Confidence            999999999999999999999999999999999999988766533322 2333445555554321              1


Q ss_pred             cHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhH
Q 005867          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (673)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~  278 (673)
                      .+.++...............++++++|+|||||||.||+|.++|+++.+.+......+     ++.++|++++.+|++|.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~  213 (509)
T 3ivr_A          139 PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHV  213 (509)
T ss_dssp             SCEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSH
T ss_pred             ChhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcch
Confidence            2222222121223334456789999999999999999999999999999998887777     78999999999999999


Q ss_pred             HHHHHhHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhh
Q 005867          279 LDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (673)
Q Consensus       279 ~gl~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (673)
                      +++...+.++..|++.++... ++..+++.++++++|+++++|+++..+++...                          
T Consensus       214 ~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--------------------------  267 (509)
T 3ivr_A          214 TGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA--------------------------  267 (509)
T ss_dssp             HHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC--------------------------
T ss_pred             hHHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc--------------------------
Confidence            999887776555555555445 99999999999999999999999998865320                          


Q ss_pred             hcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCCCCccccC
Q 005867          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVG  436 (673)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~~~~~~~  436 (673)
                                   .        ..++++|.++.+|++   +..+.+.+.+ ++++++.||+||++++++.......  ..
T Consensus       268 -------------~--------~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~--~~  321 (509)
T 3ivr_A          268 -------------P--------AQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR--PK  321 (509)
T ss_dssp             -------------G--------GGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGS--TT
T ss_pred             -------------c--------cchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccC--CC
Confidence                         0        011489999999987   8888888888 8999999999999987666543322  24


Q ss_pred             CcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCCcEEEeecC-
Q 005867          437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK-  515 (673)
Q Consensus       437 ~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~-  515 (673)
                      ++|.|+++++++|+| +++.  +++.|+.|||+|+||+++.||+++++.+.+.|.+|||+|||+|++++||+++++||. 
T Consensus       322 ~~G~p~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d  398 (509)
T 3ivr_A          322 SAGRPLFWRTVAVVD-AEDR--PLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAP  398 (509)
T ss_dssp             SCCEECTTCEEEEEC-TTSC--BCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC-
T ss_pred             cccccCCCcEEEEEC-CCCC--CCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCC
Confidence            699999999999999 6554  556678999999999999999999999999999999999999999999999999999 


Q ss_pred             -CCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHH
Q 005867          516 -KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQN  591 (673)
Q Consensus       516 -~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  591 (673)
                       +|+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++...                +..++++
T Consensus       399 ~~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~----------------~~~~l~~  461 (509)
T 3ivr_A          399 EKELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESI----------------AADALAE  461 (509)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCC----------------CHHHHHH
Confidence             999996 8999999999999999999999999987754   368888888764310                2233333


Q ss_pred             HHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 005867          592 YILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  661 (673)
Q Consensus       592 ~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~  661 (673)
                      ++++.                      ||.|++|+.|++++      .+|+|++||++|++|++++.+.-
T Consensus       462 ~l~~~----------------------L~~~~~P~~i~~v~------~lP~t~~GKidr~~Lr~~~~~~~  503 (509)
T 3ivr_A          462 FVASL----------------------IARYKKPKHVVFVE------ALPKDAKGAIDRAAVKTAHGQEG  503 (509)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             HHHhh----------------------CcccCCCcEEEEec------CCCCCCCCCccHHHHHHHHhhcc
Confidence            33332                      99999999999883      34699999999999999987643

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=9.6e-71  Score=625.15  Aligned_cols=532  Identities=18%  Similarity=0.196  Sum_probs=410.6

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcHhHHHHH
Q 005867           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAM  118 (673)
Q Consensus        40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~-~~gv~~gd~V~i~~~~~~e~~~~~  118 (673)
                      ..|++.++|+++++++||++|+++.   +...+..+++||+||.+++.++|++|+ +.|+++||+|+|+++|++++++++
T Consensus        80 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~  156 (663)
T 1ry2_A           80 QLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITL  156 (663)
T ss_dssp             EECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHH
T ss_pred             CccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHH
Confidence            4589999999999999999999985   333344579999999999999999999 899999999999999999999999


Q ss_pred             HHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhh--------hhcccccccccceEEEEeCCCcHHHHHHH
Q 005867          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE--------LLSPDCRSAQRLRVMVCFTSLTAEQKEMA  190 (673)
Q Consensus       119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  190 (673)
                      |||+++|++++|+++.++.+++.++|++++++++|+++.....        .........+.+..+++++......   .
T Consensus       157 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---~  233 (663)
T 1ry2_A          157 LAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS---V  233 (663)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSS---C
T ss_pred             HHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCc---c
Confidence            9999999999999999999999999999999999998764321        1111111223344555554321000   0


Q ss_pred             hhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhh-hhhhhccccCCCCCCcEE
Q 005867          191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVY  269 (673)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~d~~  269 (673)
                      .........|.++..... ......+..++++++|+|||||||.||||+++|++++..+.. ....+     ++.++|++
T Consensus       234 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~  307 (663)
T 1ry2_A          234 AFHAPRDLDWATEKKKYK-TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVF  307 (663)
T ss_dssp             CCCSSSEEEHHHHHTTSC-SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEE
T ss_pred             ccCCCccccHHHHHhhcC-CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCcEE
Confidence            000112356777765432 222334557899999999999999999999999998876643 33344     78899999


Q ss_pred             EEecchHhHHHHH-HhHHHhhcCcEEEEecC-----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHH
Q 005867          270 LSFLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR  343 (673)
Q Consensus       270 l~~~p~~~~~gl~-~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~  343 (673)
                      ++.+|++|..++. .++.++..|+++++++.     ++..+++.|+++++|+++++|+++..|.+...+           
T Consensus       308 ~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-----------  376 (663)
T 1ry2_A          308 FTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS-----------  376 (663)
T ss_dssp             EECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT-----------
T ss_pred             EEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCcc-----------
Confidence            9999999999984 56788999999999874     789999999999999999999999887531100           


Q ss_pred             HHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcC---CceeeecCCCCC
Q 005867          344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTET  420 (673)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g---~~v~~~YG~tE~  420 (673)
                                              ..+.        ..+++||.+++||+++++++.+++.+.+|   +++++.||+||+
T Consensus       377 ------------------------~~~~--------~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~  424 (663)
T 1ry2_A          377 ------------------------YIEN--------HSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTES  424 (663)
T ss_dssp             ------------------------SSSS--------CCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTT
T ss_pred             ------------------------cccc--------CCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccc
Confidence                                    0000        11259999999999999999999999888   899999999999


Q ss_pred             CCcccccCC--CCccccCCcCCCccceeEEEeecC-CCCCCCCCC-CCCceEEEec--CCccccccCCchhhhhhc---c
Q 005867          421 CGPTTVCFP--DEMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDD-PPCGEVCVRG--KTLFSGYYKNPDLTRESI---I  491 (673)
Q Consensus       421 ~~~~~~~~~--~~~~~~~~~G~~~~~~~v~i~~~~-~~~~~~~~~-g~~GEl~v~g--p~~~~gy~~~~~~~~~~~---~  491 (673)
                      ++.++....  ......+++|.|++|++++|+| + ++.  +++. |+.|||+|+|  |+++.|||++++.+.+.|   .
T Consensus       425 ~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~--~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~  501 (663)
T 1ry2_A          425 GSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGE--ELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPY  501 (663)
T ss_dssp             CSCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTT--CEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSS
T ss_pred             cCeeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCCC--cCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCC
Confidence            977665543  2234458999999999999999 5 444  3344 6789999999  589999999999998887   3


Q ss_pred             CCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHH
Q 005867          492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTK  568 (673)
Q Consensus       492 ~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~  568 (673)
                      +|||+|||+|++|+||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+++++...
T Consensus       502 ~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~  580 (663)
T 1ry2_A          502 PGYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSW  580 (663)
T ss_dssp             TTSEEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC-----
T ss_pred             CCEEEcCCEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCcc
Confidence            799999999999999999999999999997 7999999999999999999999999997754   479999999875310


Q ss_pred             HHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCcccccccc
Q 005867          569 KWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKK  648 (673)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv  648 (673)
                      .  .       .    ..+ ..+.+.++|++++++ +             ||+|++|+.|++++      .+|+|++||+
T Consensus       581 ~--~-------~----~~~-~~~~l~~~l~~~l~~-~-------------L~~~~~P~~i~~v~------~lP~T~sGKi  626 (663)
T 1ry2_A          581 S--T-------A----TDD-ELQDIKKHLVFTVRK-D-------------IGPFAAPKLIILVD------DLPKTRSGKI  626 (663)
T ss_dssp             ---------------------CCSHHHHHHHHHHH-H-------------TCTTTSCSEEEECS------CCCBCTTSCB
T ss_pred             c--c-------c----cch-hHHHHHHHHHHHHHH-h-------------CCCCcCCeEEEEcC------CCCCCCccCc
Confidence            0  0       0    000 000122333333332 3             99999999999983      3469999999


Q ss_pred             chHHHHHHHHHHHHHH
Q 005867          649 KRNKLLIYYQVEIDQL  664 (673)
Q Consensus       649 ~R~~l~~~~~~~~~~l  664 (673)
                      +|++|++.+.++++++
T Consensus       627 ~R~~L~~~~~~~~~~~  642 (663)
T 1ry2_A          627 MRRILRKILAGESDQL  642 (663)
T ss_dssp             CHHHHHHSCC------
T ss_pred             hHHHHHHHHcCCCCCC
Confidence            9999999987765544

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=4.1e-70  Score=603.98  Aligned_cols=487  Identities=18%  Similarity=0.215  Sum_probs=402.8

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~-gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      +||.++|+++|+++||++|+++.    +     +++||+||.++++++|++|.+. |.++|++|+++++|++++++++||
T Consensus         1 m~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA   71 (511)
T 3e7w_A            1 MKLLHAIQTHAETYPQTDAFRSQ----G-----QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG   71 (511)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHCCCCeEEEcC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence            47899999999999999999864    3     6899999999999999999875 888999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecH
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  200 (673)
                      |+++|++++|+++.++.+++.++++.++++++|+++........       .                     .....++
T Consensus        72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~-------~---------------------~~~~~~~  123 (511)
T 3e7w_A           72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVG-------Q---------------------QIQTVSA  123 (511)
T ss_dssp             HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCC-------C---------------------SSCEEEH
T ss_pred             HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhcc-------c---------------------ccceecH
Confidence            99999999999999999999999999999999997643211100       0                     0123345


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHH
Q 005867          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (673)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (673)
                      .++...............++++++|+|||||||.||+|.++|+++.+.+......+     ++..++++++.+|++|.++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  198 (511)
T 3e7w_A          124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS  198 (511)
T ss_dssp             HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred             hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence            55554433333333445789999999999999999999999999999998887776     7889999999999999999


Q ss_pred             HHHhHHHhhcCcEEEEecC----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh
Q 005867          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (673)
Q Consensus       281 l~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (673)
                      +...+.++..|+++++.+.    ++..+++.++++++|+++++|+++..++....                         
T Consensus       199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------------  253 (511)
T 3e7w_A          199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG-------------------------  253 (511)
T ss_dssp             HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT-------------------------
T ss_pred             HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc-------------------------
Confidence            8888889999999998874    78999999999999999999999988754210                         


Q ss_pred             hhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCCCC----
Q 005867          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE----  431 (673)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~~----  431 (673)
                                  ..        ...++++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......    
T Consensus       254 ------------~~--------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~  313 (511)
T 3e7w_A          254 ------------FS--------QDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVIS  313 (511)
T ss_dssp             ------------CS--------TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHT
T ss_pred             ------------cc--------cccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccc
Confidence                        00        01225899999999999999999999988 899999999999998766543322    


Q ss_pred             ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc--cCC--ccccCceEEECCCC
Q 005867          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG--WFHTGDIGQILPNG  507 (673)
Q Consensus       432 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~--~~g--~~~TGDlg~~~~~G  507 (673)
                      .....++|.|+++++++|+| +++.  +++.|+.|||+|+||.++.||+++++.+.+.|  .+|  ||+|||+|++ +||
T Consensus       314 ~~~~~~~G~~~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG  389 (511)
T 3e7w_A          314 RSESLPVGFAKPDMNIFIMD-EEGQ--PLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDG  389 (511)
T ss_dssp             TCSSCCCBEECTTCEEEEEC-TTSC--BCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETT
T ss_pred             cCCcCCCcceeCCCEEEEEC-CCCC--CCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCC
Confidence            12235799999999999999 6554  55667899999999999999999999999998  344  7999999999 599


Q ss_pred             cEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHh
Q 005867          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC  584 (673)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~  584 (673)
                      +++++||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++..          .      
T Consensus       390 ~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~----------~------  452 (511)
T 3e7w_A          390 QIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEF----------E------  452 (511)
T ss_dssp             EEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCC----------S------
T ss_pred             eEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccc----------c------
Confidence            99999999999997 8999999999999999999999999986544   47899999876431          0      


Q ss_pred             ccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 005867          585 SLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  660 (673)
Q Consensus       585 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~  660 (673)
                      ...++.    ++|++++++ +             ||.|++|+.+++++      .+|+|++||++|++|++++.+.
T Consensus       453 ~~~~~~----~~l~~~l~~-~-------------L~~~~~P~~~~~v~------~lP~t~~GKi~R~~L~~~~~~~  504 (511)
T 3e7w_A          453 KEFQLT----SAIKKELAA-S-------------LPAYMIPRKFIYQD------HIQMTANGKIDRKRIGEEVLVR  504 (511)
T ss_dssp             SHHHHH----HHHHHHHHH-H-------------SCGGGSCSEEEECS------CCCBCTTSCBCHHHHHHHHHHH
T ss_pred             chhhHH----HHHHHHHHh-h-------------CchhhCCeeEEEec------cCCCCCCcCccHHHHHhHHhhh
Confidence            111222    233333331 2             99999999999983      3469999999999999998763

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=5.4e-71  Score=618.68  Aligned_cols=479  Identities=20%  Similarity=0.189  Sum_probs=316.6

Q ss_pred             CCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHH
Q 005867           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (673)
Q Consensus        38 ~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~  117 (673)
                      .....+|.++|+++|+++||++|+++.    +     +++||+||.++++++|++|++.|+++||+|+++++|+++++++
T Consensus        71 ~~~~~~l~~~l~~~a~~~pd~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~  141 (570)
T 4gr5_A           71 APAGACVHELFEAQAARAPDAVALLHE----A-----DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVA  141 (570)
T ss_dssp             CCCSCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred             CCccCCHHHHHHHHHHHCCCCeEEECC----C-----CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHH
Confidence            345689999999999999999999874    3     5899999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCce
Q 005867          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (673)
Q Consensus       118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  197 (673)
                      +|||+++|++++|+++.++.+++.++++.++++++|++......+.        ....+...+...              
T Consensus       142 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~~~--------------  199 (570)
T 4gr5_A          142 LLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLT--------GTTTLYVEDEAA--------------  199 (570)
T ss_dssp             HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSC--------SSEEEECCC-----------------
T ss_pred             HHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhccc--------CCcceeeecccc--------------
Confidence            9999999999999999999999999999999999999986543321        111121111100              


Q ss_pred             ecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHh
Q 005867          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (673)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~  277 (673)
                              .............++++++|+|||||||.||||+++|+++.+.+... ..+     ++.+++++++.+|++|
T Consensus       200 --------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~-----~~~~~d~~l~~~p~~~  265 (570)
T 4gr5_A          200 --------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-DYA-----GFGPDEVFLQCSPVSW  265 (570)
T ss_dssp             ------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSC-CSS-----CCSTTCEEEECSCTTS
T ss_pred             --------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhh-hhc-----CCCCCCEEEEecCccH
Confidence                    00011122334578999999999999999999999999998776552 222     6788999999999998


Q ss_pred             HHHHHHhHHHhhcCcEEEEecC---CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 005867          278 ILDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (673)
Q Consensus       278 ~~gl~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (673)
                      ..+...++.+++.|+++++.+.   ++..+++.++++++|++.++|+++..|.+....                      
T Consensus       266 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----------------------  323 (570)
T 4gr5_A          266 DAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE----------------------  323 (570)
T ss_dssp             STHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG----------------------
T ss_pred             HHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh----------------------
Confidence            7777677888999999999864   899999999999999999999999988653110                      


Q ss_pred             HhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCCCC--
Q 005867          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE--  431 (673)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~~--  431 (673)
                                                .+++||.+++||+++++++.+.+.+.+ ++++++.||+||++++++......  
T Consensus       324 --------------------------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~  377 (570)
T 4gr5_A          324 --------------------------AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGD  377 (570)
T ss_dssp             --------------------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGG
T ss_pred             --------------------------hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccc
Confidence                                      014899999999999999988888877 799999999999988766544322  


Q ss_pred             -ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhcc-C--------CccccCceE
Q 005867          432 -MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-D--------GWFHTGDIG  501 (673)
Q Consensus       432 -~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~-~--------g~~~TGDlg  501 (673)
                       .....++|+|+++++++|+| +++.  +++.|+.|||+|+||+++.||+++++.+.+.|. +        |||+|||+|
T Consensus       378 ~~~~~~~iG~p~~~~~v~i~d-~~~~--~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg  454 (570)
T 4gr5_A          378 LSGTALPIGVPLAGKRAYVLD-DDLK--PAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLA  454 (570)
T ss_dssp             TTSSSCCCBEECTTEEEEEEC-TTSC--BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEE
T ss_pred             cCCCccccceeeCCCEEEEEC-CCCC--CCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeE
Confidence             22235799999999999999 6554  555678999999999999999999999999983 3        699999999


Q ss_pred             EECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCC
Q 005867          502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAG  578 (673)
Q Consensus       502 ~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~  578 (673)
                      ++|+||+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++......          
T Consensus       455 ~~d~dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~----------  523 (570)
T 4gr5_A          455 RRRADGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAP----------  523 (570)
T ss_dssp             EECTTSCEEEEEC-------------------------------------------------------------------
T ss_pred             EECCCCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCC----------
Confidence            99999999999999999997 8999999999999999999999999997644   478888887653210          


Q ss_pred             cHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 005867          579 SFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  656 (673)
Q Consensus       579 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~  656 (673)
                           .+.+++++++++.                      ||.|++|+.+++++      .+|+|++||++|++|++.
T Consensus       524 -----~~~~~l~~~l~~~----------------------l~~~~~P~~i~~v~------~lP~t~~GKi~R~~L~~~  568 (570)
T 4gr5_A          524 -----PDAAELRRHVAEA----------------------LPAYMVPVECVPVD------ELPRTPNGKLDRRALTGS  568 (570)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             -----cCHHHHHHHHHhh----------------------CccccCCcEEEEcc------cCCCCCCcCcchHhhhcc
Confidence                 0223333333332                      99999999999873      346999999999999865

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=8.9e-70  Score=614.27  Aligned_cols=502  Identities=19%  Similarity=0.182  Sum_probs=411.4

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (673)
Q Consensus        40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l  119 (673)
                      +..++.++|+++|+  ||++|+++.   +      +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus        25 ~~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l   93 (617)
T 3rg2_A           25 QDLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF   93 (617)
T ss_dssp             CCCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             CcCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence            35789999999987  999999964   3      689999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhh----hhcccccccccceEEEEeCCCcHHHHHHHhhCCC
Q 005867          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE----LLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (673)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  195 (673)
                      ||+++|++++|+++.++.+++.++++.+++++++++......    ..............+........           
T Consensus        94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  162 (617)
T 3rg2_A           94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE-----------  162 (617)
T ss_dssp             HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred             HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence            999999999999999999999999999999999998765311    11111112233344444433221           


Q ss_pred             ceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecch
Q 005867          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (673)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~  275 (673)
                        ..+.+..... .......+..++++++++|||||||.||||+++|+++.+.+......+     ++..++++++++|+
T Consensus       163 --~~~~~~~~~~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~  234 (617)
T 3rg2_A          163 --HNLQDAINHP-AEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPA  234 (617)
T ss_dssp             --TBHHHHHHSC-CSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCT
T ss_pred             --cchhhhhccc-ccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccc
Confidence              1233333332 122233455789999999999999999999999999999999888777     78999999999999


Q ss_pred             HhHHHHHH--hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 005867          276 AHILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK  352 (673)
Q Consensus       276 ~~~~gl~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (673)
                      +|.+++..  ++.++..|+++++.+. ++..++..++++++|++.++|+++..+.+.......                 
T Consensus       235 ~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-----------------  297 (617)
T 3rg2_A          235 AHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGES-----------------  297 (617)
T ss_dssp             TSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCC-----------------
T ss_pred             hhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccc-----------------
Confidence            99999874  6778999999999876 899999999999999999999999988764321100                 


Q ss_pred             HHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCc
Q 005867          353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM  432 (673)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~  432 (673)
                                                ...+++||.+++||+++++++.+.|.+.+++++++.||+||++..++.......
T Consensus       298 --------------------------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~  351 (617)
T 3rg2_A          298 --------------------------RAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAE  351 (617)
T ss_dssp             --------------------------TTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHH
T ss_pred             --------------------------cccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCccc
Confidence                                      001248999999999999999999999999999999999999876554433333


Q ss_pred             cccCCcCCCc-cceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCceEEECCCCcEE
Q 005867          433 CMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVK  510 (673)
Q Consensus       433 ~~~~~~G~~~-~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~  510 (673)
                      ....++|.|+ ++++++|+| +++.  +++.|+.|||+|+||+++.||+++++.|.+.| .++||+|||+|++++||.|+
T Consensus       352 ~~~~~~G~p~~~~~~~~i~d-~~~~--~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~  428 (617)
T 3rg2_A          352 KIIHTQGYPMCPDDEVWVAD-AEGN--PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYIT  428 (617)
T ss_dssp             HHHHCCCEESCTTCEEEEEC-TTSC--BCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEE
T ss_pred             ccccCCCccCCCCceEEEEC-CCCC--CCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEE
Confidence            3346889987 788999999 6554  55667899999999999999999999999999 78999999999999999999


Q ss_pred             EeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccH
Q 005867          511 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLV  587 (673)
Q Consensus       511 ~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (673)
                      ++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+++..+..                  +..
T Consensus       429 ~~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~------------------~~~  489 (617)
T 3rg2_A          429 VQGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPL------------------RAV  489 (617)
T ss_dssp             EEEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC------------------CHH
T ss_pred             EEeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCC------------------CHH
Confidence            99999999997 7999999999999999999999999986543   4788988887632                  233


Q ss_pred             HHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHH
Q 005867          588 QLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ  663 (673)
Q Consensus       588 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~~~  663 (673)
                      +++++        +++..             ||.|++|..+++++      .+|+|++||++|++|++.+.+....
T Consensus       490 ~l~~~--------l~~~~-------------lp~~~vP~~~~~v~------~lP~t~~GKidR~~L~~~~~~~~~~  538 (617)
T 3rg2_A          490 QVRRF--------LREQG-------------IAEFKLPDRVECVD------SLPLTAVGKVDKKQLRQWLASRASA  538 (617)
T ss_dssp             HHHHH--------HHTTT-------------CCGGGSCSEEEECS------CCCBCTTSSBCHHHHHHHHHHHHHH
T ss_pred             HHHHH--------HHhCC-------------CccccCCcEEEEec------ccCCCCCCCCcHHHHHHHHhccccc
Confidence            33333        33224             99999999999983      3469999999999999998776544

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=1e-69  Score=603.53  Aligned_cols=503  Identities=21%  Similarity=0.221  Sum_probs=393.6

Q ss_pred             CCCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHH
Q 005867           37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (673)
Q Consensus        37 ~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~  116 (673)
                      .|..++++.++|+++++ +||++|+++.    +     +++||+||.++++++|++|++.|+++||+|+++++|++++++
T Consensus        19 ~p~~~~~~~~~l~~~~~-~p~~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~   88 (529)
T 2v7b_A           19 PPALFNFAAYLFRLNET-RAGKTAYIDD----T-----GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPV   88 (529)
T ss_dssp             ---CCCHHHHHHHHTGG-GTTSEEEECS----S-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHH
T ss_pred             CccceeHHHHHHHhhhc-cCCceEEEeC----C-----CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHH
Confidence            34567889999999999 9999999864    2     579999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccc-eEEEEeCCCcHHHHHHHhhCCC
Q 005867          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTGI  195 (673)
Q Consensus       117 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~  195 (673)
                      ++|||+++|++++|+++.++.+++.++++.++++++|++......+..... ..... ..++..+....        ...
T Consensus        89 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~  159 (529)
T 2v7b_A           89 AFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALE-SAEHDGCQLIVSQPRES--------EPR  159 (529)
T ss_dssp             HHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHH-CC---CCEEEEECC--------------
T ss_pred             HHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHh-hccccCceEEEeccccc--------ccc
Confidence            999999999999999999999999999999999999999876554432211 11112 23333332210        001


Q ss_pred             ceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHH-HHHHhhhhhhhccccCCCCCCcEEEEecc
Q 005867          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFLP  274 (673)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l-~~~~~~~~~~~~~~~~~~~~~d~~l~~~p  274 (673)
                      ....+.++..... .........++++++++|||||||.||+|.++|+++ .+........+     ++.++|++++.+|
T Consensus       160 ~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p  233 (529)
T 2v7b_A          160 LAPLFEELIDAAA-PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAK  233 (529)
T ss_dssp             CCCBHHHHHHTSC-CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSC
T ss_pred             cccchhhhhccCC-CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeec
Confidence            1224666655322 122233457899999999999999999999999999 56555544434     6789999999999


Q ss_pred             hHhHHHHHH-hHHHhhcCcEEEEec-C-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 005867          275 LAHILDRVI-EEYFFRRGASVGYYH-G-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  351 (673)
Q Consensus       275 ~~~~~gl~~-~~~~l~~G~~~v~~~-~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (673)
                      ++|.+++.. .+.++..|+++++.+ . ++..+++.++++++|+++++|+++..++....     .              
T Consensus       234 ~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----~--------------  294 (529)
T 2v7b_A          234 LFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN-----L--------------  294 (529)
T ss_dssp             TTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT-----C--------------
T ss_pred             HHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc-----c--------------
Confidence            999999875 566899999999874 3 89999999999999999999999988754210     0              


Q ss_pred             HHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCC
Q 005867          352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE  431 (673)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~  431 (673)
                                    ....            ..++|.+++||+++++++.+.|.+.+|+++++.||+||++.+++......
T Consensus       295 --------------~~~~------------~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~  348 (529)
T 2v7b_A          295 --------------PARA------------DVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA  348 (529)
T ss_dssp             --------------CCGG------------GCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC
T ss_pred             --------------cccc------------CCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC
Confidence                          0000            03799999999999999999999989999999999999977665544333


Q ss_pred             ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCCcEEE
Q 005867          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKI  511 (673)
Q Consensus       432 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~  511 (673)
                       ...+++|.|+++++++|+| +++.  +++.|+.|||+|+||.++.||+++++.+...|.+|||+|||+|++++||++++
T Consensus       349 -~~~~~~G~p~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~  424 (529)
T 2v7b_A          349 -VEYGTTGRPVPGYEIELRD-EAGH--AVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVY  424 (529)
T ss_dssp             -CCTTSCCEECTTCEEEEEC-TTSC--BCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEE
T ss_pred             -CccCCcccCCCCCEEEEEC-CCCC--CCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCccEEE
Confidence             3448999999999999999 6654  45567899999999999999999999999999999999999999999999999


Q ss_pred             eecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCC--CCeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHH
Q 005867          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL  589 (673)
Q Consensus       512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (673)
                      +||.||+||+ +|++|+|.+||++|.+||+|.+|+|++...  .+.++|+|++.++..                 ....+
T Consensus       425 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~-----------------~~~~~  486 (529)
T 2v7b_A          425 AGRSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFA-----------------PSEIL  486 (529)
T ss_dssp             EEEGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTCC-----------------CCHHH
T ss_pred             eCccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCCC-----------------cchhH
Confidence            9999999997 899999999999999999999999999732  247889999876420                 01111


Q ss_pred             HHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 005867          590 QNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  655 (673)
Q Consensus       590 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~  655 (673)
                      .    ++|+++++ ++             ||.|++|+.|++++.      +|+|++||++|++|++
T Consensus       487 ~----~~l~~~l~-~~-------------L~~~~~P~~i~~v~~------lP~t~~GKi~r~~L~~  528 (529)
T 2v7b_A          487 A----EELKAFVK-DR-------------LAPHKYPRDIVFVDD------LPKTATGKIQRFKLRE  528 (529)
T ss_dssp             H----HHHHHHHH-TT-------------SCTTTSCSEEEEESC------CCBCTTSCBCHHHHHC
T ss_pred             H----HHHHHHHH-hh-------------cchhhCCeEEEEecc------CCCCCccchhHHhHhh
Confidence            1    23444443 24             999999999999843      3699999999999985

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=3e-70  Score=605.48  Aligned_cols=488  Identities=18%  Similarity=0.203  Sum_probs=396.8

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHH
Q 005867           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (673)
Q Consensus        42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~  121 (673)
                      +||.++|+++|+++||++|+++.   +      +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus         1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~   71 (512)
T 3fce_A            1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC   71 (512)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence            47899999999999999999975   3      58999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecHH
Q 005867          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (673)
Q Consensus       122 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  201 (673)
                      +++|++++|+++.++.+++.++++.++++++|++.......        ... .++..+                  .+.
T Consensus        72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--------~~~-~~~~~~------------------~~~  124 (512)
T 3fce_A           72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD--------LPV-RIVSED------------------NLK  124 (512)
T ss_dssp             HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--------CSS-EEEETH------------------HHH
T ss_pred             HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc--------ccc-ceechh------------------hhh
Confidence            99999999999999999999999999999999975432110        000 111100                  111


Q ss_pred             HHHhc-CccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHH
Q 005867          202 EFLHL-GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (673)
Q Consensus       202 ~~~~~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (673)
                      ++... ......+.....++++++|+|||||||.||+|.++|+++.+.+......+     ++..+|++++.+|++|.++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  199 (512)
T 3fce_A          125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS  199 (512)
T ss_dssp             HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred             hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence            22111 11122233455789999999999999999999999999999998887777     7899999999999999999


Q ss_pred             HHHhHHHhhcCcEEEEecC----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh
Q 005867          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (673)
Q Consensus       281 l~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (673)
                      +...+.+++.|+++++.+.    ++..+++.++++++|+++++|+++..++....                         
T Consensus       200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------------  254 (512)
T 3fce_A          200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS-------------------------  254 (512)
T ss_dssp             HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT-------------------------
T ss_pred             HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc-------------------------
Confidence            8888889999999999875    88999999999999999999999987753210                         


Q ss_pred             hhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCCCC----
Q 005867          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE----  431 (673)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~~----  431 (673)
                                  ..        ...++++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......    
T Consensus       255 ------------~~--------~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~  314 (512)
T 3fce_A          255 ------------FS--------ESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD  314 (512)
T ss_dssp             ------------CS--------TTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHH
T ss_pred             ------------cc--------chhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccc
Confidence                        00        01125899999999999999999999988 899999999999998776544332    


Q ss_pred             ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhcc----CCccccCceEEECCCC
Q 005867          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII----DGWFHTGDIGQILPNG  507 (673)
Q Consensus       432 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~----~g~~~TGDlg~~~~~G  507 (673)
                      .....++|.|+++++++++| +++.  +++.|+.|||+|+||.++.||+++++.+.+.|.    +|||+|||+|++ +||
T Consensus       315 ~~~~~~~G~~~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG  390 (512)
T 3fce_A          315 QYKSLPVGYCKSDCRLLIMK-EDGT--IAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENG  390 (512)
T ss_dssp             HCSSCCCEEECTTCEEEEEC-SSSC--BCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETT
T ss_pred             ccCCCccccccCCcEEEEEC-CCCC--CCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCC
Confidence            12346899999999999999 6555  455678999999999999999999999999983    459999999999 799


Q ss_pred             cEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHh
Q 005867          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC  584 (673)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~  584 (673)
                      ++++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++..          .      
T Consensus       391 ~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~----------~------  453 (512)
T 3fce_A          391 LLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSF----------E------  453 (512)
T ss_dssp             EEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCC----------S------
T ss_pred             EEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccc----------c------
Confidence            99999999999997 8999999999999999999999999986544   36889998876421          0      


Q ss_pred             ccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 005867          585 SLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  660 (673)
Q Consensus       585 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~  660 (673)
                      ...+    +.++|+++++ ++             ||.|++|+.+++++      .+|+|++||++|++|++.|.+.
T Consensus       454 ~~~~----~~~~l~~~l~-~~-------------L~~~~~P~~~~~~~------~lP~t~~GKi~R~~L~~~~~~~  505 (512)
T 3fce_A          454 KEFK----LTSAIKKELN-ER-------------LPNYMIPRKFMYQS------SIPMTPNGKVDRKKLLSEVTAL  505 (512)
T ss_dssp             SHHH----HHHHHHHHHH-TT-------------SCGGGSCSEEEECS------CCCBCTTSSBCHHHHHHHHHC-
T ss_pred             chhh----hHHHHHHHHH-hh-------------CchhcCCeEEEEec------ccCCCCCcChHHHHHHhhhhhc
Confidence            1111    2233444444 23             99999999999883      3469999999999999998753

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=8.9e-70  Score=606.85  Aligned_cols=474  Identities=20%  Similarity=0.223  Sum_probs=390.7

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      ..++.++|+++++++||++|+++.    +     +++||+||.+++.++|++|++.|+++||+|+++++|++++++++||
T Consensus        38 ~~~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA  108 (563)
T 1amu_A           38 DKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILA  108 (563)
T ss_dssp             TCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHCCCCeEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            478999999999999999999864    3     6899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecH
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  200 (673)
                      |+++|++++|+++.++.+++.++++.++++++|++......+.....     ...+..+....                +
T Consensus       109 ~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~-----~~~~~~~~~~~----------------~  167 (563)
T 1amu_A          109 VLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF-----NGQVEIFEEDT----------------I  167 (563)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC-----CSEEEECCCST----------------T
T ss_pred             HHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccc-----cCceeeecchh----------------h
Confidence            99999999999999999999999999999999999876554422111     11222222110                0


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHH
Q 005867          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (673)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (673)
                         .. . .......+..++++++|+|||||||.||||.++|+++.+.+......+     ++.++|++++++|++|..+
T Consensus       168 ---~~-~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  237 (563)
T 1amu_A          168 ---KI-R-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDAS  237 (563)
T ss_dssp             ---TT-S-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTHH
T ss_pred             ---cc-c-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHHH
Confidence               00 0 011112345678999999999999999999999999998888776666     7889999999999999999


Q ss_pred             HHHhHHHhhcCcEEEEecC----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh
Q 005867          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (673)
Q Consensus       281 l~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (673)
                      +..++.+++.|+++++.+.    ++..+++.++++++|++.++|+++..+...                           
T Consensus       238 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~---------------------------  290 (563)
T 1amu_A          238 VWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE---------------------------  290 (563)
T ss_dssp             HHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT---------------------------
T ss_pred             HHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc---------------------------
Confidence            8878889999999998764    789999999999999999999998765210                           


Q ss_pred             hhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCC--ccc
Q 005867          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--MCM  434 (673)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~--~~~  434 (673)
                                              ..+++|.+++||+++++++.+.|.+  .+++++.||+||++..++......  ...
T Consensus       291 ------------------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~  344 (563)
T 1amu_A          291 ------------------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGH  344 (563)
T ss_dssp             ------------------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCS
T ss_pred             ------------------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCCC
Confidence                                    0148999999999999999999876  478999999999998766543322  223


Q ss_pred             cCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhcc-------CCccccCceEEECCCC
Q 005867          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNG  507 (673)
Q Consensus       435 ~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~-------~g~~~TGDlg~~~~~G  507 (673)
                      ..++|+|+++++++|+| +++.  +++.|+.|||+|+||+++.|||++++.|.+.|.       ++||+|||+|++|+||
T Consensus       345 ~~~vG~p~~~~~v~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG  421 (563)
T 1amu_A          345 SVPIGAPIQNTQIYIVD-ENLQ--LKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDG  421 (563)
T ss_dssp             SCCCBEECTTEEEEEEC-TTSC--BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTS
T ss_pred             CCcccceeCCCEEEEEC-CCcC--CCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCC
Confidence            46899999999999999 6654  455678999999999999999999999999984       2499999999999999


Q ss_pred             cEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHh
Q 005867          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC  584 (673)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~  584 (673)
                      +|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++..+.                  
T Consensus       422 ~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~------------------  482 (563)
T 1amu_A          422 NIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI------------------  482 (563)
T ss_dssp             CEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCC------------------
T ss_pred             eEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCC------------------
Confidence            99999999999997 8999999999999999999999999987654   3788998876432                  


Q ss_pred             ccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 005867          585 SLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  657 (673)
Q Consensus       585 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~  657 (673)
                      +.+++++++++.                      ||.|++|+.|++++      .+|+|++||++|++|++.+
T Consensus       483 ~~~~l~~~l~~~----------------------L~~y~~P~~i~~v~------~lP~t~~GKi~r~~L~~~~  527 (563)
T 1amu_A          483 PLEQLRQFSSEE----------------------LPTYMIPSYFIQLD------KMPLTSNGKIDRKQLPEPD  527 (563)
T ss_dssp             CHHHHHHHHHHH----------------------SCGGGSCSEEEECS------SCCBCTTSSBCGGGSCCCC
T ss_pred             CHHHHHHHHHhh----------------------CchhhCCcEEEEec------ccCCCCCcChhHHhcCCcc
Confidence            334455555444                      99999999999983      3469999999999998754

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=1.5e-69  Score=610.19  Aligned_cols=473  Identities=18%  Similarity=0.145  Sum_probs=384.6

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      ..|+.++|+++|+++||++|+++.   +      +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus        26 ~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~la   96 (620)
T 4dg8_A           26 HPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLA   96 (620)
T ss_dssp             SCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            579999999999999999999975   3      5899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecH
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  200 (673)
                      |+++|++++|+++.++.+++.++++.+++++++++........        ..... .                     +
T Consensus        97 ilkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~--------~~~~~-~---------------------~  146 (620)
T 4dg8_A           97 ILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN--------GLPCV-P---------------------V  146 (620)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT--------TSCEE-E---------------------G
T ss_pred             HHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc--------CCcee-e---------------------e
Confidence            9999999999999999999999999999999997654322110        01100 0                     0


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHH
Q 005867          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (673)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (673)
                      ....  ............++++++|+|||||||.||||+++|+++.+.+.. ...+     ++.+++++++.+|++|..+
T Consensus       147 ~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~~  218 (620)
T 4dg8_A          147 RHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFDAA  218 (620)
T ss_dssp             GGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTSTHH
T ss_pred             ccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHHHH
Confidence            0000  001111223346899999999999999999999999999887765 3334     6889999999999999999


Q ss_pred             HHHhHHHhhcCcEEEEecC---CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhh
Q 005867          281 RVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (673)
Q Consensus       281 l~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (673)
                      +..++.++..|+++++.+.   ++..+.+.++++++|+++++|+++..+.+...                          
T Consensus       219 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--------------------------  272 (620)
T 4dg8_A          219 TLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP--------------------------  272 (620)
T ss_dssp             HHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG--------------------------
T ss_pred             HHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh--------------------------
Confidence            9888899999999998753   89999999999999999999999998764210                          


Q ss_pred             hcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCCCC---cc
Q 005867          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---MC  433 (673)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~~---~~  433 (673)
                                            ..+++||.+++||++++++..+.+.+.+ +++++|.||+||++.+++......   ..
T Consensus       273 ----------------------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~  330 (620)
T 4dg8_A          273 ----------------------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEE  330 (620)
T ss_dssp             ----------------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGS
T ss_pred             ----------------------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCC
Confidence                                  0114899999999999998888776665 899999999999998766543222   23


Q ss_pred             ccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccC--------CccccCceEEECC
Q 005867          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID--------GWFHTGDIGQILP  505 (673)
Q Consensus       434 ~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~--------g~~~TGDlg~~~~  505 (673)
                      ...++|+|+++++++|+| +++. ..++.|+.|||+|+|++++.||+++++.|.+.|.+        +||+|||+|++++
T Consensus       331 ~~~~iG~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~  408 (620)
T 4dg8_A          331 DDIPIGKAIAGTAVLLLD-EHGQ-EIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDE  408 (620)
T ss_dssp             SSCCCBEECTTEEEEEEC-TTSC-BCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECT
T ss_pred             CCCCceecccCcEEEEEC-ccCC-CCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECC
Confidence            346899999999999999 5554 33556789999999999999999999999999943        7999999999999


Q ss_pred             CCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCCC--eEEEEEecChhHHHHHHHHcCCCCcHHHH
Q 005867          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS--MLVAVVVPCEEDTKKWAYSNGHAGSFLEL  583 (673)
Q Consensus       506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~--~~~a~v~~~~~~~~~~~~~~~~~~~~~~~  583 (673)
                      ||+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++.  .++++++...+.                 
T Consensus       409 dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~-----------------  470 (620)
T 4dg8_A          409 QGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADA-----------------  470 (620)
T ss_dssp             TSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTC-----------------
T ss_pred             CCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHH-----------------
Confidence            9999999999999998 79999999999999999999999999866443  455555543321                 


Q ss_pred             hccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 005867          584 CSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  661 (673)
Q Consensus       584 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~  661 (673)
                           +.+.+.+.                      ||.|++|+.+++++      .+|+|++||++|++|++.|.+..
T Consensus       471 -----~~~~l~~~----------------------Lp~y~~P~~~~~v~------~lP~t~~GKidR~~L~~~~~~~~  515 (620)
T 4dg8_A          471 -----SPQALLRQ----------------------LPTWQRPHACVRVE------ALPLTAHGKLDRAALLRRLEEPL  515 (620)
T ss_dssp             -----CCHHHHHH----------------------SCGGGSCSEEEECS------SCCCC----CCHHHHHHHTCSCC
T ss_pred             -----HHHHHHHh----------------------ChhhcCCcEEEEEC------cCCCCcccCHhHHHHhhcccccc
Confidence                 11223322                      99999999999883      34699999999999998875433

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=5.3e-70  Score=601.98  Aligned_cols=491  Identities=22%  Similarity=0.219  Sum_probs=374.1

Q ss_pred             cHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHHH
Q 005867           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN  122 (673)
Q Consensus        43 tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~~  122 (673)
                      ||.++|+++|+++||++|+++.   +      +++||+||.+++.++|++|++.   +||+|+++++|++++++++|||+
T Consensus         2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~   69 (501)
T 3ipl_A            2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW   69 (501)
T ss_dssp             -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence            6778999999999999999864   3      5899999999999999999986   89999999999999999999999


Q ss_pred             hcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCc-eecHH
Q 005867          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK-PYSWD  201 (673)
Q Consensus       123 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~  201 (673)
                      ++|++++|+++.++.+++.++++.++++++|++............  ......+.........   ........ .....
T Consensus        70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  144 (501)
T 3ipl_A           70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS--LDDIEFAGRDITTNGL---LDNTMGIQYDTSNE  144 (501)
T ss_dssp             HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE--TTC------------------------------
T ss_pred             HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc--cccceeeeeecccccc---cccccccccccchh
Confidence            999999999999999999999999999999998865443321110  0111111000000000   00000000 00011


Q ss_pred             HHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHH
Q 005867          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (673)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl  281 (673)
                      .+...............++++++|+|||||||.||+|.++|+++.+.+......+     ++..++++++.+|++|.+|+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~  219 (501)
T 3ipl_A          145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISGL  219 (501)
T ss_dssp             -----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHHH
T ss_pred             hccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHHH
Confidence            1111111111223345789999999999999999999999999999998887777     78899999999999999999


Q ss_pred             HHhHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcC
Q 005867          282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (673)
Q Consensus       282 ~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (673)
                      ...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+....                            
T Consensus       220 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------------  271 (501)
T 3ipl_A          220 SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH----------------------------  271 (501)
T ss_dssp             HHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------
T ss_pred             HHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------
Confidence            888889999999999887 999999999999999999999999988653110                            


Q ss_pred             CcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCC-ccccCCcC
Q 005867          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAG  439 (673)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~-~~~~~~~G  439 (673)
                                          ...+||.+++||+++++++.+.+.+ +++++++.||+||+++.+....... .....++|
T Consensus       272 --------------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G  330 (501)
T 3ipl_A          272 --------------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVG  330 (501)
T ss_dssp             --------------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCB
T ss_pred             --------------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCC
Confidence                                0027999999999999999999987 5999999999999987655443322 23447899


Q ss_pred             CCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCCcEEEeecCCCeE
Q 005867          440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI  519 (673)
Q Consensus       440 ~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i  519 (673)
                      .|+++++++++| ++       .++.|||+|+|+.++.||+++++.+.. |.+|||+|||+|++|+||+++++||.||+|
T Consensus       331 ~p~~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~i  401 (501)
T 3ipl_A          331 MPSANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDLI  401 (501)
T ss_dssp             EECTTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCCE
T ss_pred             CCCCCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCEEEEcCCCeEEEEccccceE
Confidence            999999999999 43       235799999999999999999999887 889999999999999999999999999999


Q ss_pred             EcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHH
Q 005867          520 KISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE  596 (673)
Q Consensus       520 ~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (673)
                      |+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++++++...+.                  +.+++++++++.
T Consensus       402 k~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~------------------~~~~l~~~l~~~  462 (501)
T 3ipl_A          402 IS-GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI------------------SKAQLIAYLSKH  462 (501)
T ss_dssp             EC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC------------------CHHHHHHHHHHH
T ss_pred             EE-CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCC------------------CHHHHHHHHHhh
Confidence            96 8999999999999999999999999987654   3678888865432                  344555555544


Q ss_pred             HHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 005867          597 LKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  660 (673)
Q Consensus       597 l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~  660 (673)
                                            ||.|++|+.|++++      .+|+|++||++|++|++.+.+.
T Consensus       463 ----------------------L~~~~~P~~i~~v~------~lP~t~~GKi~R~~l~~~~~~~  498 (501)
T 3ipl_A          463 ----------------------LAKYKVPKHFEKVD------TLPYTSTGKLQRNKLYREGHHH  498 (501)
T ss_dssp             ----------------------SCGGGSCSEEEECS------SCC-------------------
T ss_pred             ----------------------CccccCCCEEEEec------ccCCCCCCCEeHHHHhhccccc
Confidence                                  99999999999983      3469999999999999987653

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=1.4e-69  Score=601.56  Aligned_cols=493  Identities=16%  Similarity=0.136  Sum_probs=391.1

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      +.+|.++|+++|+++||++|+.+.    +     +++||+||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus         3 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA   73 (521)
T 3l8c_A            3 LKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA   73 (521)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            578999999999999999999874    3     6899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecH
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  200 (673)
                      |+++|++++|+++.++.+++.++++.++++++|++++....+.        .. .                     ...+
T Consensus        74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--------~~-~---------------------~~~~  123 (521)
T 3l8c_A           74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--------GI-S---------------------LVSL  123 (521)
T ss_dssp             HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--------TS-E---------------------EEEH
T ss_pred             HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc--------cC-c---------------------ccch
Confidence            9999999999999999999999999999999999876432211        11 1                     1112


Q ss_pred             HHHHhcC--ccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhH
Q 005867          201 DEFLHLG--KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (673)
Q Consensus       201 ~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~  278 (673)
                      .++....  ...........++++++|+|||||||.||+|.++|+++.+.+.......   ......++++++..|++|.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~  200 (521)
T 3l8c_A          124 SEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFD  200 (521)
T ss_dssp             HHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSG
T ss_pred             hhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHH
Confidence            2221110  0112223355789999999999999999999999999998877655431   1267889999999999999


Q ss_pred             HHHHHhHHHhhcCcEEEEecC----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 005867          279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (673)
Q Consensus       279 ~gl~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (673)
                      .++..++.++..|+++++.+.    ++..+++.+.++++|++.++|+++..+.....                       
T Consensus       201 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----------------------  257 (521)
T 3l8c_A          201 LSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD-----------------------  257 (521)
T ss_dssp             GGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT-----------------------
T ss_pred             HHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc-----------------------
Confidence            888778888999999998775    88999999999999999999999987643110                       


Q ss_pred             HhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CCceeeecCCCCCCCcccccCCCC--
Q 005867          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE--  431 (673)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~~--  431 (673)
                                    ..        ...++++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......  
T Consensus       258 --------------~~--------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~  315 (521)
T 3l8c_A          258 --------------FC--------QAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM  315 (521)
T ss_dssp             --------------CS--------TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHH
T ss_pred             --------------cc--------cccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeeccccc
Confidence                          00        01125899999999999999999999888 899999999999998766543321  


Q ss_pred             --ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc----cCCccccCceEEECC
Q 005867          432 --MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI----IDGWFHTGDIGQILP  505 (673)
Q Consensus       432 --~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~----~~g~~~TGDlg~~~~  505 (673)
                        .....++|+|+++++++|+| +++.  +++.|+.|||+|+||.++.||+++++.+.+.|    .+|||+|||+|++|+
T Consensus       316 ~~~~~~~~vG~p~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~  392 (521)
T 3l8c_A          316 VDNYTRLPIGYPKPDSPTYIID-EDGK--ELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE  392 (521)
T ss_dssp             HHHCSSCEEEEECTTSCEEEEC-TTSC--BCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS
T ss_pred             ccCCCccccccccCCCEEEEEC-CCcC--CCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC
Confidence              12336799999999999999 6554  45567899999999999999999999999998    356999999999999


Q ss_pred             CCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC----CeEEEEEecChhHHHHHHHHcCCCCcHH
Q 005867          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK----SMLVAVVVPCEEDTKKWAYSNGHAGSFL  581 (673)
Q Consensus       506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~----~~~~a~v~~~~~~~~~~~~~~~~~~~~~  581 (673)
                      ||++++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++..+.    +.++|+|+++++....       .    
T Consensus       393 dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~-------~----  460 (521)
T 3l8c_A          393 DNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKER-------F----  460 (521)
T ss_dssp             SSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGG-------C----
T ss_pred             CCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccc-------c----
Confidence            9999999999999997 7999999999999999999999999986532    4689999988753100       0    


Q ss_pred             HHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 005867          582 ELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  661 (673)
Q Consensus       582 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~  661 (673)
                         ..   ...+.++|++++++ +             ||.|++|+.|++++      .+|+|++||++|++|+++++++-
T Consensus       461 ---~~---~~~~~~~l~~~l~~-~-------------l~~~~~P~~i~~v~------~lP~t~~GKidr~~L~~~~~~~~  514 (521)
T 3l8c_A          461 ---DR---ELELTKAIKASVKD-H-------------MMSYMMPSKFLYRD------SLPLTPNGKIDIKTLINEVNNRE  514 (521)
T ss_dssp             ---SS---HHHHHHHHHHHSGG-G-------------SCGGGSCSEEEECS------SCCBCTTSSBCHHHHHHHTC---
T ss_pred             ---cc---chhhHHHHHHHHHh-h-------------CccccCCeEEEEec------ccCCCCCcCccHHHHhhhhhcCC
Confidence               00   01123444545442 3             99999999999883      34699999999999999987643

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=5.2e-70  Score=647.68  Aligned_cols=541  Identities=24%  Similarity=0.308  Sum_probs=345.9

Q ss_pred             CCCCCCCCCceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHH
Q 005867           15 KDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR   94 (673)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~   94 (673)
                      ....+....+|++......+|    ...||.++|.++++++||++|+++.   +..    +++||+||.++++++|++|+
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~p----~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~  106 (979)
T 3tsy_A           38 QSNNNNSDVIFRSKLPDIYIP----NHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANFH  106 (979)
T ss_dssp             -------CCCBCCSSCCCCCC----TTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCceeecCCCCCCCC----CCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHH
Confidence            344455566788765554443    4579999999999999999999874   322    68999999999999999999


Q ss_pred             HcCCCCCCEEEEEcCCcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccce
Q 005867           95 ASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLR  174 (673)
Q Consensus        95 ~~gv~~gd~V~i~~~~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  174 (673)
                      +.|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++......+.......  . .
T Consensus       107 ~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~-~  183 (979)
T 3tsy_A          107 KLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD--G-V  183 (979)
T ss_dssp             HTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS--C-C
T ss_pred             HcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC--C-c
Confidence            999999999999999999999999999999999999999999999999999999999999987655443221111  1 1


Q ss_pred             EEEEeCCCcHHHHHHHhhCCCceecHHHHHhcCcc--CCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhh
Q 005867          175 VMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV  252 (673)
Q Consensus       175 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~  252 (673)
                      .++.+++...      .........+.++......  ...+.....++++++|+|||||||.||+|.++|+++++.+...
T Consensus       184 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~  257 (979)
T 3tsy_A          184 VIVCIDDNES------VPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQ  257 (979)
T ss_dssp             EEEECCCCTT------SCCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHH
T ss_pred             eEEEeCCccc------ccCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHH
Confidence            2334433210      0011234455555443322  1223345678999999999999999999999999999887765


Q ss_pred             hhhhccccCCCCCCcEEEEecchHhHHHHHH-hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHH
Q 005867          253 DLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGI  330 (673)
Q Consensus       253 ~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~  330 (673)
                      ..... ....+.+++++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..|.+..
T Consensus       258 ~~~~~-~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  336 (979)
T 3tsy_A          258 VDGEN-PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSS  336 (979)
T ss_dssp             HCSSS-CSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCG
T ss_pred             HHhhc-ccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCc
Confidence            43211 0125778999999999999999865 5667999999999887 9999999999999999999999998876521


Q ss_pred             HHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhc-CC
Q 005867          331 KKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CA  409 (673)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~  409 (673)
                      .                                     ...        ..+++||.+++||+++++++.+++.+.+ ++
T Consensus       337 ~-------------------------------------~~~--------~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~  371 (979)
T 3tsy_A          337 E-------------------------------------TEK--------YDLSSIRVVKSGAAPLGKELEDAVNAKFPNA  371 (979)
T ss_dssp             G-------------------------------------GGT--------SCCTTCCEEEESSCCCCSSHHHHHHHHCTTC
T ss_pred             c-------------------------------------ccC--------CCccceEEEEEcCCCCCHHHHHHHHHHCCCC
Confidence            1                                     011        1125899999999999999999999988 89


Q ss_pred             ceeeecCCCCCCCcccccC----CCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchh
Q 005867          410 FLVQGYGLTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL  485 (673)
Q Consensus       410 ~v~~~YG~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~  485 (673)
                      ++++.||+||++.+++...    .......+++|.|+++++++|+| ++.+ .+++.|+.|||+|+||.++.||+++|+.
T Consensus       372 ~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~i~g~~v~~GY~~~p~~  449 (979)
T 3tsy_A          372 KLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD-PDTG-DSLSRNQPGEICIRGHQIMKGYLNNPAA  449 (979)
T ss_dssp             EEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTSC-CBCCTTCCEEEEEESTTSCSEETTCHHH
T ss_pred             eEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEe-CCCC-CCCCCCCccEEEEECCCccccccCChhh
Confidence            9999999999998765432    11233447899999999999999 4433 4566778999999999999999999999


Q ss_pred             hhhhc-cCCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEe
Q 005867          486 TRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVV  561 (673)
Q Consensus       486 ~~~~~-~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~  561 (673)
                      +.+.| .+|||+|||+|++++||+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+
T Consensus       450 t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv  528 (979)
T 3tsy_A          450 TAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVV  528 (979)
T ss_dssp             HHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC-----------------------------------------------
T ss_pred             hhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEE
Confidence            99999 7899999999999999999999999999998 7999999999999999999999999987654   47889988


Q ss_pred             cChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCc
Q 005867          562 PCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDL  641 (673)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p  641 (673)
                      +.++..                .+..++++++++.                      ||.|++|+.+++++      .+|
T Consensus       529 ~~~~~~----------------~~~~~l~~~l~~~----------------------l~~~~~p~~i~~v~------~lP  564 (979)
T 3tsy_A          529 KSKDSE----------------LSEDDVKQFVSKQ----------------------VVFYKRINKVFFTE------SIP  564 (979)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ECCCCC----------------CCHHHHHHHHHHh----------------------cccccCCeEEEEeC------CcC
Confidence            776431                0223344443332                      99999999998873      346


Q ss_pred             cccccccchHHHHHHHHHHHHHHHhhh
Q 005867          642 VTATLKKKRNKLLIYYQVEIDQLYEKL  668 (673)
Q Consensus       642 ~t~~GKv~R~~l~~~~~~~~~~ly~~~  668 (673)
                      +|++||++|++|+++|.+.+...|...
T Consensus       565 ~t~~GKi~r~~L~~~~~~~~~~~~~~~  591 (979)
T 3tsy_A          565 KAPSGKILRKDLRAKLANGLGSGMASV  591 (979)
T ss_dssp             ------------------------CCH
T ss_pred             cCCCCCeeHHHHHHHHHhhcCCccccc
Confidence            999999999999999999988888654

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=1.8e-69  Score=596.98  Aligned_cols=477  Identities=25%  Similarity=0.287  Sum_probs=372.5

Q ss_pred             CCCCcHHHHHHHHHHhCCC-CCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHH
Q 005867           39 SDLNTAWDIFSMSVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (673)
Q Consensus        39 ~~~~tl~~~l~~~a~~~pd-~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~  117 (673)
                      ..|.++.++|.++++++|+ ++|+++.    +     +++||+||.++++++|.+|.     .|++|+++++|+++++++
T Consensus        19 ~~~~tl~~~l~~~a~~~p~d~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~   84 (505)
T 3nyq_A           19 SHMSSLFPALSPAPTGAPADRPALRFG----E-----RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVA   84 (505)
T ss_dssp             -----CCTTTSSCCCSGGGGSEEEEET----T-----EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHH
T ss_pred             cccchhHHHHHHHHHhCCCCCeEEEEC----C-----eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHH
Confidence            3578999999999999887 9999874    3     68999999999999999774     388999999999999999


Q ss_pred             HHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCce
Q 005867          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (673)
Q Consensus       118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  197 (673)
                      +|||+++|++++|+++.++.+++.++++.++++++|++.....      ......... +..+..               
T Consensus        85 ~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~-~~~~~~---------------  142 (505)
T 3nyq_A           85 VVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL------PPALGALER-VDVDVR---------------  142 (505)
T ss_dssp             HHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC------CGGGTTSEE-EECCTT---------------
T ss_pred             HHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc------chhhccccc-cccccc---------------
Confidence            9999999999999999999999999999999999999865211      001111111 111100               


Q ss_pred             ecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHh
Q 005867          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (673)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~  277 (673)
                                .....+.....++++++++|||||||.||+|.++|+++.+.+......+     ++..+|++++.+|++|
T Consensus       143 ----------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~  207 (505)
T 3nyq_A          143 ----------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLFH  207 (505)
T ss_dssp             ----------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTTS
T ss_pred             ----------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHHH
Confidence                      0111223345789999999999999999999999999999999888777     7889999999999999


Q ss_pred             HHHHHH-hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 005867          278 ILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (673)
Q Consensus       278 ~~gl~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (673)
                      ..|+.. ++.++..|+++++.+. ++..+++.+ ++++|+++++|+++..+.+.......                    
T Consensus       208 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~--------------------  266 (505)
T 3nyq_A          208 VHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE--------------------  266 (505)
T ss_dssp             HHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH--------------------
T ss_pred             HHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch--------------------
Confidence            999875 6778999999999877 899999999 88999999999999988764321110                    


Q ss_pred             hhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCcccc
Q 005867          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV  435 (673)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~  435 (673)
                                    ....+        +++|.+++||+++++++.+++.+.+++++++.||+||+++.++...... ...
T Consensus       267 --------------~~~~l--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~  323 (505)
T 3nyq_A          267 --------------LAKAL--------AGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGE-PRA  323 (505)
T ss_dssp             --------------HHHHH--------HHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSC-CCT
T ss_pred             --------------hhccc--------ccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCC-CCC
Confidence                          00011        3899999999999999999999989999999999999997766554433 344


Q ss_pred             CCcCCCccceeEEEeecCCCCCCCC-CCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCceEEECCCCcEEEee
Q 005867          436 GTAGPVSVYSELRLEEVPEMGYSPL-DDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIID  513 (673)
Q Consensus       436 ~~~G~~~~~~~v~i~~~~~~~~~~~-~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~~G  513 (673)
                      +++|+|+++++++|+| +++...+. +.|+.|||+|+|+.++.||+++++.+...| .+|||+|||+|++++||.++++|
T Consensus       324 ~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~G  402 (505)
T 3nyq_A          324 GTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVG  402 (505)
T ss_dssp             TCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEE
T ss_pred             CCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeC
Confidence            8999999999999999 66665553 447899999999999999999999999999 69999999999999999999999


Q ss_pred             cC-CCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHH
Q 005867          514 RK-KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL  589 (673)
Q Consensus       514 R~-~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (673)
                      |. ||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.+...       .        ...+++
T Consensus       403 R~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~-------~--------~~~~~l  466 (505)
T 3nyq_A          403 RKATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAA-------P--------PALGTL  466 (505)
T ss_dssp             ESSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTS-------C--------CCHHHH
T ss_pred             CccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCC-------C--------CCHHHH
Confidence            98 599997 8999999999999999999999999987654   47999999875320       0        023445


Q ss_pred             HHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 005867          590 QNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  655 (673)
Q Consensus       590 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~  655 (673)
                      ++++++.                      ||.|++|+.|++++      .+|+|++||++|++|++
T Consensus       467 ~~~l~~~----------------------L~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~  504 (505)
T 3nyq_A          467 ADHVAAR----------------------LAPHKRPRVVRYLD------AVPRNDMGKIMKRALNR  504 (505)
T ss_dssp             HHHHHHH----------------------TCGGGSCSEEEECS------CCCC-------------
T ss_pred             HHHHHhh----------------------CCCCcCccEEEEEC------CCCCCCCcCeeHHhhcc
Confidence            5555544                      99999999999983      34699999999999986

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=2.8e-67  Score=592.52  Aligned_cols=502  Identities=17%  Similarity=0.187  Sum_probs=394.9

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (673)
Q Consensus        40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l  119 (673)
                      +..||.++|+++|+++||++|+++.   ++  +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus         9 ~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~l   83 (590)
T 3kxw_A            9 QCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFL   83 (590)
T ss_dssp             TCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             CcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHH
Confidence            4689999999999999999999986   42  223789999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEeeCCCCC---ChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCc
Q 005867          120 ACNALSLICVPLYDTL---GPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (673)
Q Consensus       120 A~~~~G~~~vpl~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  196 (673)
                      ||+++|++++|+++..   +.+++.++++.+++++++++.+....+........+....+...                 
T Consensus        84 A~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  146 (590)
T 3kxw_A           84 GCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAI-----------------  146 (590)
T ss_dssp             HHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEE-----------------
T ss_pred             HHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccccee-----------------
Confidence            9999999999999987   45789999999999999999887766543221111111111111                 


Q ss_pred             eecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchH
Q 005867          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (673)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~  276 (673)
                        ..+.+.... ..........++++++|+|||||||.||||.++|+++++.+......+     ++.++|++++++|++
T Consensus       147 --~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~  218 (590)
T 3kxw_A          147 --ALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPPH  218 (590)
T ss_dssp             --EGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred             --echhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCCC
Confidence              111111000 112223456789999999999999999999999999999999887777     789999999999999


Q ss_pred             hHHHHHH-hHHHhhcCcEEEEecC-----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 005867          277 HILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK  350 (673)
Q Consensus       277 ~~~gl~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (673)
                      |.+|+.. ++.+++.|+++++.+.     ++..+++.++++++|++.++|.++..+.+.+...                 
T Consensus       219 h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-----------------  281 (590)
T 3kxw_A          219 HDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREE-----------------  281 (590)
T ss_dssp             SHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGG-----------------
T ss_pred             cchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhh-----------------
Confidence            9999886 6778999999998874     7899999999999999999999998876532111                 


Q ss_pred             HHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcC------CceeeecCCCCCCCcc
Q 005867          351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETCGPT  424 (673)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g------~~v~~~YG~tE~~~~~  424 (673)
                                       ....        ..+++||.+++||+++++++.+.|.+.++      .++++.||+||+++.+
T Consensus       282 -----------------~~~~--------~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~  336 (590)
T 3kxw_A          282 -----------------KKEG--------LDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLV  336 (590)
T ss_dssp             -----------------GGTT--------CCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEE
T ss_pred             -----------------hccC--------CCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccccccccccccccee
Confidence                             0011        12259999999999999999999998873      4799999999999877


Q ss_pred             cccCCC--------------------------CccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCcccc
Q 005867          425 TVCFPD--------------------------EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG  478 (673)
Q Consensus       425 ~~~~~~--------------------------~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~g  478 (673)
                      +.....                          ......++|.|+++  ++|+| +++ ..+++.|+.|||+|+||.++.|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~~-~~~~~~g~~GEl~v~g~~v~~G  412 (590)
T 3kxw_A          337 TGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PDT-LIPCDFDQVGEIWVQSNSVAKG  412 (590)
T ss_dssp             EECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TTT-CCBCCTTBCEEEEEESTTSCCC
T ss_pred             ecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CCC-CcCCCCCCEEEEEEeCCccccc
Confidence            654321                          11233688999998  77888 442 3566777899999999999999


Q ss_pred             ccCCchhhhhhccC-------C--ccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHH-hcCcCcc--eEE
Q 005867          479 YYKNPDLTRESIID-------G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY-CVAPIIE--DIW  546 (673)
Q Consensus       479 y~~~~~~~~~~~~~-------g--~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l-~~~p~V~--~~~  546 (673)
                      |+++++.|.+.|.+       |  ||+|||+|++| +|.|+++||.||+||+ +|++|+|.+||++| ..+|.|.  +|+
T Consensus       413 Y~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~~  490 (590)
T 3kxw_A          413 YWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKCA  490 (590)
T ss_dssp             BTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEEE
T ss_pred             ccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccEE
Confidence            99999999999943       5  99999999999 9999999999999998 89999999999999 8899998  788


Q ss_pred             EEecCCC--CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCcc-ce
Q 005867          547 VYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRG-FE  623 (673)
Q Consensus       547 v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~-~~  623 (673)
                      |++.+++  +.+++++++.++....              .+.+++.+++++.                      |+. |.
T Consensus       491 v~~~~~~~~~~~~~~v~~~~~~~~~--------------~~~~~l~~~l~~~----------------------l~~~~~  534 (590)
T 3kxw_A          491 AFVIQEEHEYKLTVMCEVKNRFMDD--------------VAQDNLFNEIFEL----------------------VYENHQ  534 (590)
T ss_dssp             EEEEEETTEEEEEEEEEESCTTCCH--------------HHHHHHHHHHHHH----------------------HHHHHS
T ss_pred             EEEecCCCCceEEEEEEeccccccc--------------hhHHHHHHHHHHH----------------------HHHHcC
Confidence            8885543  4788888877542000              0233444444444                      332 45


Q ss_pred             eee-EEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 005867          624 HIK-GVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  659 (673)
Q Consensus       624 ~p~-~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~  659 (673)
                      +|. .+.+++    ++.+|+|++||++|++|+++|.+
T Consensus       535 ~p~~~i~~v~----~~~lP~t~sGKi~R~~L~~~~~~  567 (590)
T 3kxw_A          535 LEVHTIVLIP----LKAMPHTTSGKIRRNFCRKHLLD  567 (590)
T ss_dssp             CCCCEEEEEE----TTCSCCCSCHHHHHHHHHHHHHH
T ss_pred             CceeEEEEEC----CCccCcCCCcHHHHHHHHHHHHc
Confidence            553 555553    24567999999999999999976

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=1.2e-67  Score=591.34  Aligned_cols=523  Identities=16%  Similarity=0.135  Sum_probs=318.7

Q ss_pred             CCCCCCCcHHHHHHHHHHhCCCCCceeeeecccCC----CCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc
Q 005867           36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGK----FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC  111 (673)
Q Consensus        36 ~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~----~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~  111 (673)
                      +...+..|+.++|+++|+++||++|+++.   ++.    ....+++||+||.++++++|++|.+.|+ +||+|+++++|+
T Consensus        14 ~~~~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~   89 (562)
T 3ite_A           14 AQYTSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRS   89 (562)
T ss_dssp             ----CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSC
T ss_pred             eeecccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCC
Confidence            33455688999999999999999999976   321    2233789999999999999999999999 799999999999


Q ss_pred             HhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHh
Q 005867          112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV  191 (673)
Q Consensus       112 ~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  191 (673)
                      +++++++|||+++|++++|+++.++.+++.++++.++++++|+++.......      ......++....          
T Consensus        90 ~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~----------  153 (562)
T 3ite_A           90 LIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTKN----------  153 (562)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETTC----------
T ss_pred             HHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeecccc----------
Confidence            9999999999999999999999999999999999999999999876543321      111112222111          


Q ss_pred             hCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhcc---ccCCCCCCcE
Q 005867          192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ---FEDKMTVDDV  268 (673)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~---~~~~~~~~d~  268 (673)
                            ..+.+...... .........++++++|+|||||||.||+|+++|+++.+.+......+..   ....+...++
T Consensus       154 ------~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (562)
T 3ite_A          154 ------QSFIENLSTQD-TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGK  226 (562)
T ss_dssp             ------HHHHHHHHHSC-CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCE
T ss_pred             ------hhhhhhccccc-ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCce
Confidence                  11222222221 1112234467889999999999999999999999999887765543311   1124678899


Q ss_pred             EEEecchHhHHHHHHhHHHhhcCcEEEEecC--CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHH
Q 005867          269 YLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (673)
Q Consensus       269 ~l~~~p~~~~~gl~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (673)
                      +++..|+.|..++...+.++..|+++++.+.  .+..+.+.++++++|+++++|+++..+...                 
T Consensus       227 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~-----------------  289 (562)
T 3ite_A          227 FLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV-----------------  289 (562)
T ss_dssp             EECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC-----------------
T ss_pred             EEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC-----------------
Confidence            9999999998888878889999999988765  467888999999999999999987654210                 


Q ss_pred             HHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccc
Q 005867          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV  426 (673)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~  426 (673)
                                          +            ..+++||.+++||+++++++.+.|.+.+++++++.||+||+++.++.
T Consensus       290 --------------------~------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~  337 (562)
T 3ite_A          290 --------------------P------------EDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSA  337 (562)
T ss_dssp             --------------------G------------GGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEE
T ss_pred             --------------------c------------cccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeee
Confidence                                0            01258999999999999999999998889999999999999987766


Q ss_pred             cCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCC--ccccCceEEEC
Q 005867          427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG--WFHTGDIGQIL  504 (673)
Q Consensus       427 ~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g--~~~TGDlg~~~  504 (673)
                      ..........++|.|++++++++++ ++++ .+++.|+.|||+|+||.++.|||++++.+...+.+|  ||+|||+|++|
T Consensus       338 ~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d  415 (562)
T 3ite_A          338 GRILPDSDTRCIGHPLGDSVAHVLA-PGSN-EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMD  415 (562)
T ss_dssp             EECCTTSCTTEEEEECTTCEEEEEC-TTSS-CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEEC
T ss_pred             eeecCCCCCccccccCCCCeEEEEe-CCCC-CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEc
Confidence            5544444457899999999999999 4433 456677899999999999999999999988777777  99999999999


Q ss_pred             CCCcEEEeecCCCeEEcCCceeechHHHHHHHhcC-cCcceEEEEecCCCC---eEEEEEecChhHHHHHHHHcCCCCcH
Q 005867          505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVA-PIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYSNGHAGSF  580 (673)
Q Consensus       505 ~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~-p~V~~~~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~  580 (673)
                      +||+|+++||.||+||+ +|++|+|.+||++|.+| |.+.+++|++.+++.   ..+++++...+....        ...
T Consensus       416 ~dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~  486 (562)
T 3ite_A          416 ADSSILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVR--------GEL  486 (562)
T ss_dssp             TTSCEEEEEEC---------------------------------------------------------------------
T ss_pred             CCCeEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEeccccccc--------ccc
Confidence            99999999999999997 89999999999999998 788888888766542   333333333221100        000


Q ss_pred             HHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccc-cccccchHHHHHHHHH
Q 005867          581 LELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVT-ATLKKKRNKLLIYYQV  659 (673)
Q Consensus       581 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t-~~GKv~R~~l~~~~~~  659 (673)
                      .. ..  +-.+.+.++|+++++              .+||.|++|+.|++++      .+|+| ++||++|++|+++|++
T Consensus       487 ~~-~~--~~~~~~~~~l~~~~~--------------~~L~~y~~P~~i~~v~------~lP~t~~~GKi~r~~L~~~~~~  543 (562)
T 3ite_A          487 RW-IN--ENYKEINNSLRQACE--------------QTLPAYMVPDFIIPIS------FIPLRDTSAKTDAKALEHMFHT  543 (562)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cc-cc--cchhhHHHHHHHHHH--------------hhCCcccCCcEEEEec------cCCCCCCCCcchHHHHHHHHhc
Confidence            00 00  001112233333333              3399999999999883      33688 8999999999999976


Q ss_pred             -HHHHHHhhh
Q 005867          660 -EIDQLYEKL  668 (673)
Q Consensus       660 -~~~~ly~~~  668 (673)
                       ..++++..+
T Consensus       544 ~~~~~~~~~~  553 (562)
T 3ite_A          544 LSLGELFGES  553 (562)
T ss_dssp             ----------
T ss_pred             cCHHHHhccC
Confidence             345565543

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=1.7e-65  Score=623.90  Aligned_cols=477  Identities=19%  Similarity=0.216  Sum_probs=395.1

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      ..++.++|+.+++++||++|+++.   +      +++||+||.++++++|++|++.|+++|++|+|++++++++++++||
T Consensus       463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la  533 (1304)
T 2vsq_A          463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG  533 (1304)
T ss_dssp             CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence            378999999999999999999875   3      5899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecH
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  200 (673)
                      |+++|++++|++|.++.+++.+++++++++++|++......+..     .+.....+.+++...               +
T Consensus       534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~~~~~~~~~~~~~~~---------------~  593 (1304)
T 2vsq_A          534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-----LPYTGTTLFIDDQTR---------------F  593 (1304)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-----CCCCSEEEESSCGGG---------------G
T ss_pred             HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-----cCCCCcEEEeccccc---------------c
Confidence            99999999999999999999999999999999998865443211     111122333322110               0


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHH
Q 005867          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (673)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g  280 (673)
                          ..  ....+.....+++++||+|||||||.||||+++|+++.+. ......+     ++..+++++++.|++|..+
T Consensus       594 ----~~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-----~~~~~d~~l~~~~~~fd~~  661 (1304)
T 2vsq_A          594 ----EE--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-----AFSDQDTFLSVSNYAFDAF  661 (1304)
T ss_dssp             ----GS--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-----CCCTTCEEEECSCTTSTHH
T ss_pred             ----cc--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-----CCCCCCEEEEECCccHHHH
Confidence                00  1111223457899999999999999999999999999876 3333333     6789999999999999888


Q ss_pred             HHHhHHHhhcCcEEEEecC----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh
Q 005867          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (673)
Q Consensus       281 l~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (673)
                      ...++.++..|+++++.+.    ++..+.+.+.++++|+++++|+++..+.+.....                       
T Consensus       662 ~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~-----------------------  718 (1304)
T 2vsq_A          662 TFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDW-----------------------  718 (1304)
T ss_dssp             HHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHH-----------------------
T ss_pred             HHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhc-----------------------
Confidence            8888899999999999874    8899999999999999999999999875421000                       


Q ss_pred             hhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcC-CceeeecCCCCCCCcccccCCCC---c
Q 005867          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDE---M  432 (673)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g-~~v~~~YG~tE~~~~~~~~~~~~---~  432 (673)
                                       +        ++||.+++|||++++++.+.|.+.++ .+++|.||+||+++.++......   .
T Consensus       719 -----------------~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~  773 (1304)
T 2vsq_A          719 -----------------M--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDS  773 (1304)
T ss_dssp             -----------------H--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSS
T ss_pred             -----------------C--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCcccc
Confidence                             0        28999999999999999999888774 78999999999998776544322   2


Q ss_pred             cccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhcc-------CCccccCceEEECC
Q 005867          433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILP  505 (673)
Q Consensus       433 ~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~-------~g~~~TGDlg~~~~  505 (673)
                      ....++|+|++|++++|+| +++.  +++.|+.|||+|+|++++.||+++|+.|.+.|.       ++||+|||+|++++
T Consensus       774 ~~~~~iG~p~~~~~~~i~d-~~~~--~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~  850 (1304)
T 2vsq_A          774 ISSLPIGKPISNASVYILN-EQSQ--LQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLP  850 (1304)
T ss_dssp             CSSCCCBEECTTEEEEEEC-TTSC--BCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECT
T ss_pred             CCCCCCceeeCCCEEEEEC-CCcC--CCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcC
Confidence            2336899999999999999 6554  555678999999999999999999999999993       34999999999999


Q ss_pred             CCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHH
Q 005867          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLE  582 (673)
Q Consensus       506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~  582 (673)
                      ||.|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.++.   ..++|+|+.....                
T Consensus       851 dG~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~----------------  913 (1304)
T 2vsq_A          851 DGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQL----------------  913 (1304)
T ss_dssp             TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSS----------------
T ss_pred             CCeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCC----------------
Confidence            9999999999999998 7999999999999999999999999986543   4899999986532                


Q ss_pred             HhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 005867          583 LCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  656 (673)
Q Consensus       583 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~  656 (673)
                        +..++++++.+.                      ||.|++|..+++++      .+|+|++||++|++|.+.
T Consensus       914 --~~~~l~~~l~~~----------------------Lp~ymvP~~~~~l~------~lP~t~~GKidR~~L~~~  957 (1304)
T 2vsq_A          914 --SAEDVKAHLKKQ----------------------LPAYMVPQTFTFLD------ELPLTTNGKVNKRLLPKP  957 (1304)
T ss_dssp             --CHHHHHHHHHHH----------------------SCGGGSCSEEEEES------CCCCCSSCSSCCSCCCCC
T ss_pred             --CHHHHHHHHHHh----------------------ChHhhhccEEEEec------ccCCCCCcccCHhhcCCc
Confidence              334555555544                      99999999999983      346999999999988543

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=2.5e-55  Score=482.42  Aligned_cols=401  Identities=16%  Similarity=0.200  Sum_probs=311.7

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (673)
Q Consensus        40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l  119 (673)
                      ...||.++|+++|+++||++|+++....++..+..+++||+||.++++++|++|++.|+ +||+|+|+++|++++++++|
T Consensus        22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l  100 (480)
T 3t5a_A           22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL  100 (480)
T ss_dssp             --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred             CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence            35799999999999999999999871111233445799999999999999999999996 99999999999999999999


Q ss_pred             HHHhcCCeEeeCCC---CCChhhHHHHHhccCceEEEEcchhhhhhhcccccccc-cceEEEEeCCCcHHHHHHHhhCCC
Q 005867          120 ACNALSLICVPLYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTGI  195 (673)
Q Consensus       120 A~~~~G~~~vpl~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~  195 (673)
                      ||+++|++++|+++   .++.+++.++++.++++++|++......+......... ....++..+...            
T Consensus       101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  168 (480)
T 3t5a_A          101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------  168 (480)
T ss_dssp             HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC------------
T ss_pred             HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc------------
Confidence            99999999999999   77899999999999999999999876655433221110 011222221110            


Q ss_pred             ceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCC------CcEE
Q 005867          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV------DDVY  269 (673)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~------~d~~  269 (673)
                               . ............++++++|+|||||||.||||+++|+++.+.+......+     .+..      ++++
T Consensus       169 ---------~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d~~  233 (480)
T 3t5a_A          169 ---------L-DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNSAL  233 (480)
T ss_dssp             ---------T-TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTEEE
T ss_pred             ---------c-ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCCeE
Confidence                     0 00112223455788999999999999999999999999999988877766     4555      8999


Q ss_pred             EEecchHhHHHHHH-hHHHhhcCcEEEEecC-----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHH
Q 005867          270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR  343 (673)
Q Consensus       270 l~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~  343 (673)
                      ++.+|++|.+|+.. ++.+++.|+++++.+.     ++..+++.++++++| +.++|+++..++.....           
T Consensus       234 l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~-----------  301 (480)
T 3t5a_A          234 VSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTT-----------  301 (480)
T ss_dssp             EECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCC-----------
T ss_pred             EEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcC-----------
Confidence            99999999999764 6778999999999863     889999999999999 88899988777542110           


Q ss_pred             HHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcC------CceeeecCC
Q 005867          344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGL  417 (673)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g------~~v~~~YG~  417 (673)
                                            .+...        ...+++||.+++||+++++++.+.|.+.++      +.+++.||+
T Consensus       302 ----------------------~~~~~--------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~  351 (480)
T 3t5a_A          302 ----------------------DDDMA--------GRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWL  351 (480)
T ss_dssp             ----------------------TGGGT--------TCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEE
T ss_pred             ----------------------ccccc--------ccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccc
Confidence                                  00011        112359999999999999999999999874      479999999


Q ss_pred             CCCCCcccccCCCC------------------------ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecC
Q 005867          418 TETCGPTTVCFPDE------------------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK  473 (673)
Q Consensus       418 tE~~~~~~~~~~~~------------------------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp  473 (673)
                      ||+++.++......                        .....++|+|++ ++++|+| ++++ .+++.|+.|||+|+||
T Consensus       352 TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~g-~~~~~g~~GEl~v~g~  428 (480)
T 3t5a_A          352 AEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDTC-IECPDGTVGEIWVHGD  428 (480)
T ss_dssp             TTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTTT-EECCTTBCEEEEEEST
T ss_pred             cccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCCC-cCCCCCCEEEEEEeCC
Confidence            99998776654322                        123368999999 9999999 5432 4556678999999999


Q ss_pred             CccccccCCchhhhhhc------------cCCccccCceEEECCCCcEEEeec
Q 005867          474 TLFSGYYKNPDLTRESI------------IDGWFHTGDIGQILPNGVVKIIDR  514 (673)
Q Consensus       474 ~~~~gy~~~~~~~~~~~------------~~g~~~TGDlg~~~~~G~l~~~GR  514 (673)
                      +++.|||++|+.|.+.|            .+|||+|||+|+++ ||+|+|+||
T Consensus       429 ~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          429 NVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             TSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred             ccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence            99999999999999998            35699999999997 999999998

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=8.3e-49  Score=411.81  Aligned_cols=314  Identities=18%  Similarity=0.113  Sum_probs=255.6

Q ss_pred             CCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEec
Q 005867          219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH  298 (673)
Q Consensus       219 ~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~~  298 (673)
                      .+++++|+|||||||.||+|+++|+++.+.+......+     +++++|++++++|++|.+|+..++.++..|+++++..
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~  110 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE  110 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence            46789999999999999999999999999999888877     8899999999999999999988888999999998887


Q ss_pred             CCHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHH
Q 005867          299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK  378 (673)
Q Consensus       299 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (673)
                      . ....+..++++++|+++++|+++..|++....                                      ..+     
T Consensus       111 ~-~~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~--------------------------------------~~~-----  146 (358)
T 4gs5_A          111 P-TANPLAGLDHADFDFVAMVPMQLQSILENSAT--------------------------------------SGQ-----  146 (358)
T ss_dssp             C-CSCTTTTCSSCCCSEEEECHHHHHHHHHCTTT--------------------------------------GGG-----
T ss_pred             c-cccHHHHHHHhCCeEEEcChHHHHHhhccccc--------------------------------------ccc-----
Confidence            5 22346788999999999999999988652110                                      001     


Q ss_pred             HHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCccccCCcCCCccceeEEEeecCCCCCC
Q 005867          379 ARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS  458 (673)
Q Consensus       379 ~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~  458 (673)
                         +++||.+++||+++++++.+++++ +++++++.||+||+++.++....+.... +++|.+.||+++.+.+       
T Consensus       147 ---l~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~-------  214 (358)
T 4gs5_A          147 ---VDRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE-------  214 (358)
T ss_dssp             ---GGGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT-------
T ss_pred             ---CCcceEEEEcccCCCchheecccc-cCceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC-------
Confidence               148999999999999999999987 5999999999999998877666554433 7889999999888755       


Q ss_pred             CCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHH--
Q 005867          459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY--  536 (673)
Q Consensus       459 ~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l--  536 (673)
                            .|||+++|+..               .+|||+|||+|++|++| ++++||.||+||+ +|++|+|.+||++|  
T Consensus       215 ------~Gel~~~g~~~---------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~  271 (358)
T 4gs5_A          215 ------RGCLHISGAVT---------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAA  271 (358)
T ss_dssp             ------TSEEEEESGGG---------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHH
T ss_pred             ------cCceEEecccc---------------cCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHH
Confidence                  59999998643               37899999999999888 6778999999997 89999999999887  


Q ss_pred             -hcCcCcceEEEE-ecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccc
Q 005867          537 -CVAPIIEDIWVY-GDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANW  611 (673)
Q Consensus       537 -~~~p~V~~~~v~-~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  611 (673)
                       ..||+|.+|+|+ +.+++   +.++|+|+......                 ..+++++++++.               
T Consensus       272 ~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~~-----------------~~~~l~~~l~~~---------------  319 (358)
T 4gs5_A          272 VFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPEA-----------------LTERLTAEIRSR---------------  319 (358)
T ss_dssp             HHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCHH-----------------HHHHHHHHHHHH---------------
T ss_pred             hccCCCccEEEEEEecCCccCCEEEEEEEECCCCCc-----------------CHHHHHHHHHhh---------------
Confidence             468999999886 44433   36888888765431                 223344444333               


Q ss_pred             cccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 005867          612 DTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  661 (673)
Q Consensus       612 ~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~  661 (673)
                             ||.|++|+.|++++      .+|+|++||++|++|++++++..
T Consensus       320 -------L~~~~~P~~i~~v~------~lP~t~~GKi~R~~L~~~l~e~~  356 (358)
T 4gs5_A          320 -------VSTYENPKHIYFAK------AFAKTQTDKIDKRATFQKLSDSS  356 (358)
T ss_dssp             -------SCGGGSCSCEEEES------SCCBCTTSCBCHHHHHHHTC---
T ss_pred             -------CCCCCCceEEEEEC------CcCCCCCCChhHHHHHHHhhhhc
Confidence                   99999999999984      34699999999999999886643

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=1.3e-43  Score=384.65  Aligned_cols=338  Identities=17%  Similarity=0.126  Sum_probs=257.8

Q ss_pred             CCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecch-HhHHHHHHhHHHhhcCcEE
Q 005867          216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV  294 (673)
Q Consensus       216 ~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~~~~gl~~~~~~l~~G~~~  294 (673)
                      ...++++++++|||||||.||+|.++|+++..........+..  .++.++|++++.+|+ .|..++...+.++..|+++
T Consensus        88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~  165 (443)
T 2y4o_A           88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA--AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMV  165 (443)
T ss_dssp             SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEE
T ss_pred             CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEE
Confidence            3467899999999999999999999999998776554432211  167899999999998 5777777777889999999


Q ss_pred             EEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHh
Q 005867          295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA  373 (673)
Q Consensus       295 v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (673)
                      ++.+. ++..+++.++++++|+++++|+++..|.+.........                                    
T Consensus       166 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------------------------------------  209 (443)
T 2y4o_A          166 VPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDP------------------------------------  209 (443)
T ss_dssp             ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG------------------------------------
T ss_pred             EECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCc------------------------------------
Confidence            88776 99999999999999999999999998876433210000                                    


Q ss_pred             HHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCc-ccccCCCCccccCCcCCCccceeEEEeec
Q 005867          374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEV  452 (673)
Q Consensus       374 ~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~v~i~~~  452 (673)
                             ..+++|.+++||+++++++.+.+.+.+|+++++.||+||+++. .........   ...+.+.+++.++|+| 
T Consensus       210 -------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d-  278 (443)
T 2y4o_A          210 -------AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVETK---DGPVIWEDHFYPEIID-  278 (443)
T ss_dssp             -------GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTTC---CSEEECTTTEEEEEEC-
T ss_pred             -------ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCCC---CceEEccCCeEEEEEc-
Confidence                   0148999999999999999999999899999999999998543 332221111   1244566899999999 


Q ss_pred             CCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCC-CcE-----EEeecCCCeEEcCCcee
Q 005867          453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-GVV-----KIIDRKKNLIKISQGEY  526 (673)
Q Consensus       453 ~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~-G~l-----~~~GR~~d~i~~~~G~~  526 (673)
                      +++ ..+++.|+.|||+|+|.            ++..|.++||+|||+|+++++ |++     ++.||.||+|++ +|++
T Consensus       279 ~~~-g~~~~~G~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~-~G~~  344 (443)
T 2y4o_A          279 PVT-GEVLPDGSQGELVFTSL------------TKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIV-RGVN  344 (443)
T ss_dssp             TTT-CCBCCTTCCEEEEEEES------------SCSSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEE-TTEE
T ss_pred             CCC-CCCCCCCCceEEEEeCC------------CcccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEE-CCEE
Confidence            432 24566778999999983            334456899999999999999 986     899999999997 7999


Q ss_pred             echHHHHHHHhcCcCcceEEEEecCC---CCeEEEEEecCh--hHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHH
Q 005867          527 VALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCE--EDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA  601 (673)
Q Consensus       527 v~~~~iE~~l~~~p~V~~~~v~~~~~---~~~~~a~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  601 (673)
                      |+|.+||++|.+||+|.+++|++..+   .+.++|+|++.+  +..          ..   ..+.+++++.+.+.     
T Consensus       345 v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~----------~~---~~~~~~l~~~l~~~-----  406 (443)
T 2y4o_A          345 VFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAAS----------VT---DGERAALARELQHR-----  406 (443)
T ss_dssp             ECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTT----------CC---HHHHHHHHHHHHHH-----
T ss_pred             ECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCccccc----------ch---hhHHHHHHHHHHHH-----
Confidence            99999999999999999999887432   357889999876  210          00   00223344444443     


Q ss_pred             HhcccccccccccccccCccc-eeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 005867          602 ERNKVIFANWDTGCFSLLRGF-EHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  655 (673)
Q Consensus       602 ~~~~~~~~~~~~~~~~~Lp~~-~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~  655 (673)
                                       |+.| .+|..|.+++    ++.+|+|++||++|...++
T Consensus       407 -----------------l~~~~~~p~~v~~v~----~~~lP~t~~GKi~r~~~~r  440 (443)
T 2y4o_A          407 -----------------IKTMVGVSSGVTVLA----AGGIPATATGKARRVIDRR  440 (443)
T ss_dssp             -----------------HHHHTCCCCEEEEEC----TTCSCCCTTSCCCSEEECC
T ss_pred             -----------------HHHHhCCceEEEEeC----CCcccCccCCcceEEEecc
Confidence                             6665 4787888773    2456899999999975443

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=2.4e-43  Score=381.85  Aligned_cols=333  Identities=16%  Similarity=0.147  Sum_probs=249.6

Q ss_pred             CCCC-CceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHHHHH-HhHHHhhcCcE
Q 005867          216 PPQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV-IEEYFFRRGAS  293 (673)
Q Consensus       216 ~~~~-~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~gl~-~~~~~l~~G~~  293 (673)
                      ...+ +++++++|||||||.||+|.++|+++.+.+..+...+..  .++.++|++++.+|+.|..+.. ..+.++..|++
T Consensus        81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~  158 (436)
T 3qov_A           81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM--VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL  158 (436)
T ss_dssp             CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH--TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred             cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH--cCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence            3455 899999999999999999999999998776665432211  1678899999999986555544 56677999999


Q ss_pred             EEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHH
Q 005867          294 VGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL  372 (673)
Q Consensus       294 ~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (673)
                      +++.+. ++..+++.++++++|+++++|+++..|.+.........                                   
T Consensus       159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~-----------------------------------  203 (436)
T 3qov_A          159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDP-----------------------------------  203 (436)
T ss_dssp             EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCT-----------------------------------
T ss_pred             EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------
Confidence            988866 99999999999999999999999999876543221000                                   


Q ss_pred             hHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCc-ccccCCCCccccCCcCCCccceeEEEee
Q 005867          373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEE  451 (673)
Q Consensus       373 ~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~v~i~~  451 (673)
                              .+++||.+++||+++++++.+.+.+.||+++++.||+||+++. .......   . ...|.+.+++.++|+|
T Consensus       204 --------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~---~-~g~~~~~~~~~v~i~d  271 (436)
T 3qov_A          204 --------RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQE---Q-NGMHFWEDCYLVEIID  271 (436)
T ss_dssp             --------TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTT---C-SSEEECTTTEEEEEEC
T ss_pred             --------ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCC---C-CeeEEccCceEEEEEE
Confidence                    0148999999999999999999999999999999999999654 3322211   1 2356677899999999


Q ss_pred             cCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECCCC------c---EEEeecCCCeEEcC
Q 005867          452 VPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG------V---VKIIDRKKNLIKIS  522 (673)
Q Consensus       452 ~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G------~---l~~~GR~~d~i~~~  522 (673)
                      .+++  .+++.|+.|||+|+|.            +...|.++||+|||+|+++++|      +   +++.||.||+|++ 
T Consensus       272 ~~~g--~~~~~g~~Gel~v~~~------------~~~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~-  336 (436)
T 3qov_A          272 PETG--EPVPEGEIGELVLTTL------------DREMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFII-  336 (436)
T ss_dssp             TTTC--SBCSTTCCEEEEEEES------------SCCSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEE-
T ss_pred             CCCC--CCCCCCCceEEEEecc------------CcCCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEE-
Confidence            3333  4566778999999983            3344568999999999999998      5   6999999999998 


Q ss_pred             CceeechHHHHHHHhcCcCcceEEEEecCC---CCeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHH
Q 005867          523 QGEYVALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKN  599 (673)
Q Consensus       523 ~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~---~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  599 (673)
                      +|++|+|.+||++|.+||+|.+++|++..+   .+.++|+|++. +..         .++..   ..+++.+.+++.   
T Consensus       337 ~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~---------~~~~~---~~~~l~~~l~~~---  400 (436)
T 3qov_A          337 KGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLS---------TDNYI---ELEKIRRDIIRQ---  400 (436)
T ss_dssp             TTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTC---------CCCHH---HHHHHHHHHHHH---
T ss_pred             CCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Ccc---------ccchh---hHHHHHHHHHHH---
Confidence            799999999999999999999999988654   35899999988 421         00000   123445555544   


Q ss_pred             HHHhcccccccccccccccCccc-eeeeEEEEecCCCCCCCCccccccccchHH
Q 005867          600 AAERNKVIFANWDTGCFSLLRGF-EHIKGVILDPRPFDMERDLVTATLKKKRNK  652 (673)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~Lp~~-~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~  652 (673)
                                         |+.+ .+|..|.+++    .+.+|+|+ ||++|..
T Consensus       401 -------------------l~~~~~~p~~i~~v~----~~~lP~t~-GKi~R~~  430 (436)
T 3qov_A          401 -------------------LKDEILVTPKVKLVK----KGSLPQSE-GKAVRVK  430 (436)
T ss_dssp             -------------------HHHHHSSCCEEEEEC----TTCCC--------CEE
T ss_pred             -------------------HHHhcCCceEEEEeC----CCcccCcC-CcceEEE
Confidence                               4455 6677888874    23568999 9999853

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=1.3e-42  Score=376.08  Aligned_cols=334  Identities=18%  Similarity=0.168  Sum_probs=256.8

Q ss_pred             CCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecch-HhHHHHHHhHHHhhcCcEE
Q 005867          216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV  294 (673)
Q Consensus       216 ~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~~~~gl~~~~~~l~~G~~~  294 (673)
                      ...++++++++|||||||.||+|.++|+++...+..+...+..  .++..+|++++.+|+ +|..++...+.++..|+++
T Consensus        86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~  163 (437)
T 2y27_A           86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA--AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTV  163 (437)
T ss_dssp             SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEE
T ss_pred             cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEcccccccccchHHHHHHHHcCCEE
Confidence            4467899999999999999999999999988776554432211  167889999999998 6777777778889999999


Q ss_pred             EEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhcCCcCCcchhHHHHh
Q 005867          295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA  373 (673)
Q Consensus       295 v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (673)
                      ++.+. ++..+++.++++++|+++++|+++..|.+.........                                    
T Consensus       164 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------------------------------------  207 (437)
T 2y27_A          164 IPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP------------------------------------  207 (437)
T ss_dssp             ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG------------------------------------
T ss_pred             EeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc------------------------------------
Confidence            88776 99999999999999999999999998876433210000                                    


Q ss_pred             HHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCc-ccccCCCCccccCCcCCCccceeEEEeec
Q 005867          374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEV  452 (673)
Q Consensus       374 ~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~v~i~~~  452 (673)
                             ..+++|.+++||+++++++.+.+.+.+|+++++.||+||+++. +........   ...+.+.+++.++|+| 
T Consensus       208 -------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d-  276 (437)
T 2y27_A          208 -------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK---DGPTIWEDHFYPEIID-  276 (437)
T ss_dssp             -------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC---SSCEECTTTEEEEEEC-
T ss_pred             -------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC---CceeEccCceEEEEEc-
Confidence                   0148999999999999999999998889999999999998543 332222111   1245567899999999 


Q ss_pred             CCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECC-CCcE-----EEeecCCCeEEcCCcee
Q 005867          453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP-NGVV-----KIIDRKKNLIKISQGEY  526 (673)
Q Consensus       453 ~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~-~G~l-----~~~GR~~d~i~~~~G~~  526 (673)
                      ++. ..+++.|+.|||+|+|.            ++..|.++||+|||+|++++ +|++     ++.||.||+|++ +|++
T Consensus       277 ~~~-g~~~~~g~~Gel~v~~~------------t~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~-~G~~  342 (437)
T 2y27_A          277 PET-GEVLPDGELGELVFTSL------------TKEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIV-RGVN  342 (437)
T ss_dssp             TTT-CCBCCTTCCEEEEEEES------------SCSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEE-TTEE
T ss_pred             CCC-CCCCCCCCccEEEEecC------------CcCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEE-CCeE
Confidence            443 34566788999999982            33445689999999999998 6985     899999999997 8999


Q ss_pred             echHHHHHHHhcCcCcceEEEEecC---CCCeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHHHHHHHHHHHHHHh
Q 005867          527 VALEYLENVYCVAPIIEDIWVYGDS---LKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAER  603 (673)
Q Consensus       527 v~~~~iE~~l~~~p~V~~~~v~~~~---~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  603 (673)
                      |+|.+||++|.+||+|.+++|++.+   ..+.++|+|++.++...          +   ..+.+++++.+.+.       
T Consensus       343 v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~----------~---~~~~~~l~~~l~~~-------  402 (437)
T 2y27_A          343 VFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAP----------D---TAAIQVAKQALAYD-------  402 (437)
T ss_dssp             ECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTT----------C---HHHHHHHHHHHHHH-------
T ss_pred             ECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCccc----------h---hhhHHHHHHHHHHH-------
Confidence            9999999999999999999888743   23589999998864310          0   00223344444443       


Q ss_pred             cccccccccccccccCccc-eeeeEEEEecCCCCCCCCccccccccchHH
Q 005867          604 NKVIFANWDTGCFSLLRGF-EHIKGVILDPRPFDMERDLVTATLKKKRNK  652 (673)
Q Consensus       604 ~~~~~~~~~~~~~~~Lp~~-~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~  652 (673)
                                     |+.| .+|..|.+++    ++.+|+|+ ||++|..
T Consensus       403 ---------------l~~~~~~p~~v~~v~----~~~lP~t~-GKi~r~~  432 (437)
T 2y27_A          403 ---------------IKSLIGVTAVINVLP----VNGIERSV-GKARRVV  432 (437)
T ss_dssp             ---------------HHHHHCCCEEEEECC----TTCSCCCS-SSCCCEE
T ss_pred             ---------------HHHhcCCceEEEEeC----CCCccCCC-CcceEEE
Confidence                           6666 4787887773    24568999 9999964

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.95  E-value=5.1e-27  Score=247.86  Aligned_cols=239  Identities=18%  Similarity=0.170  Sum_probs=173.2

Q ss_pred             CCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecch-HhHHHHHHhHHHhhcCcEEE
Q 005867          217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVG  295 (673)
Q Consensus       217 ~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~~~~gl~~~~~~l~~G~~~v  295 (673)
                      ..++++++++|||||||.||+|.++|+++...+......+..  .++..+|++++.+|+ +|..|+...+.++..|+ ++
T Consensus        88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v  164 (369)
T 3hgu_A           88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQH--RPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MF  164 (369)
T ss_dssp             SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTT--STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CE
T ss_pred             CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHh--hCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EE
Confidence            467889999999999999999999999999988754433221  267889999999999 99999888777888999 44


Q ss_pred             EecC-CHH-----------------------HHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 005867          296 YYHG-DLN-----------------------ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  351 (673)
Q Consensus       296 ~~~~-~~~-----------------------~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (673)
                      +... ++.                       .+++.++++++|+++++|+++..|++.....                  
T Consensus       165 ~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~------------------  226 (369)
T 3hgu_A          165 FSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV------------------  226 (369)
T ss_dssp             ECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH------------------
T ss_pred             ECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh------------------
Confidence            4433 666                       7788999999999999999999986542111                  


Q ss_pred             HHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHH-Hhc-CCceeeecCCCCCCCcccccCC
Q 005867          352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTC-CAFLVQGYGLTETCGPTTVCFP  429 (673)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~-~~~-g~~v~~~YG~tE~~~~~~~~~~  429 (673)
                                         ...+        ++||.+++||+++++++.+.+. +.| ++++++.||+||+++++..+..
T Consensus       227 -------------------~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~  279 (369)
T 3hgu_A          227 -------------------LQMK--------QSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI  279 (369)
T ss_dssp             -------------------HHHH--------HHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB
T ss_pred             -------------------cccc--------CCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc
Confidence                               0111        3899999999999999999999 899 8999999999999876643321


Q ss_pred             CCccccCCcCCC------ccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEE
Q 005867          430 DEMCMVGTAGPV------SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI  503 (673)
Q Consensus       430 ~~~~~~~~~G~~------~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~  503 (673)
                            .++|.+      +++++++|+| +++ ..+++.|+.|||+|++...            ..+ --+|+|||++..
T Consensus       280 ------~~~G~~~~~~~~~~~~~v~ivD-~~~-g~~vp~G~~GEl~vt~l~~------------~~~-l~ry~tgD~~~~  338 (369)
T 3hgu_A          280 ------TSESQQVIYDSFSPFITYDVVD-SIT-AQTVEYGERGNVIVTHLSP------------WAF-YPRVAERDTAIR  338 (369)
T ss_dssp             ------CTTCSSCEEECCTTTEEEEEEC-TTT-CSBCCTTCEEEEEEEEEET------------TEE-EEEEEEEEEEEE
T ss_pred             ------ccCCCcccccCCCCCeEEEEEC-CCC-CcCCCCCCceEEEEEEcCc------------ccc-cccccCCceEEE
Confidence                  248888      9999999999 522 2466678999999997321            111 124889999888


Q ss_pred             CCC--C-------cEEEeecCCCeEEcCCce
Q 005867          504 LPN--G-------VVKIIDRKKNLIKISQGE  525 (673)
Q Consensus       504 ~~~--G-------~l~~~GR~~d~i~~~~G~  525 (673)
                      .+.  |       .+..++|.++..++ .|.
T Consensus       339 ~~~~~g~~~d~~~~v~~~~~~~~~~~i-~gv  368 (369)
T 3hgu_A          339 LPGVSGFAGDRLADIEPLKISEGRKVI-EGV  368 (369)
T ss_dssp             ECCSTTCSSCEEEEEEECC------------
T ss_pred             ecCCCCCcCcccccceeccccCCCcee-eec
Confidence            543  2       25567777777766 353

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=99.30  E-value=4.6e-12  Score=107.59  Aligned_cols=52  Identities=8%  Similarity=0.040  Sum_probs=44.8

Q ss_pred             ecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChh
Q 005867          513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEE  565 (673)
Q Consensus       513 GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~  565 (673)
                      .|.||||++ +|.+|+|.+||++|.+||+|.+++|++.+++   +.+.++|+..++
T Consensus         1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~   55 (109)
T 3lax_A            1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQL   55 (109)
T ss_dssp             CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTT
T ss_pred             CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeec
Confidence            489999998 7999999999999999999999999886543   368888887764

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.68  E-value=1e-07  Score=103.31  Aligned_cols=133  Identities=19%  Similarity=0.167  Sum_probs=81.3

Q ss_pred             Cc---eeEEEEcCCCCCHHHHHHHHHhc-CCcee-eecCCCCCCCcccccCCCCccccCCcCC-Cccc-eeEEEeecCCC
Q 005867          383 GR---LRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSVY-SELRLEEVPEM  455 (673)
Q Consensus       383 ~~---lr~i~~~G~~l~~~~~~~~~~~~-g~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~-~~v~i~~~~~~  455 (673)
                      ++   +..++.||.   ......++..+ +.+++ ..|++||+- +.....+.  ..+...+. .+++ .-...++.++.
T Consensus       297 Pnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~--~~~~~~~~~L~~~~~ffEFip~~~~  370 (581)
T 4eql_A          297 PNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETT-FGINLDPL--CKPEDVSYTFMPNMSYFEFIPMDGG  370 (581)
T ss_dssp             TTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCE-EEECSCTT--SCGGGCCEEECTTSSEEEEEECSTT
T ss_pred             CCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccce-eeeccCCC--CCcccCceeecCCcEEEEEEecccc
Confidence            56   555556662   44445555555 67777 899999963 22211111  11111221 1122 22233332111


Q ss_pred             -CC-----CCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECC----CCcEEEeecCCCeEEcCCce
Q 005867          456 -GY-----SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQGE  525 (673)
Q Consensus       456 -~~-----~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~----~G~l~~~GR~~d~i~~~~G~  525 (673)
                       ..     ..+..|+.+||.++.-   .|.|+             |++||+.++..    ..++.|.||.+++|++ .|+
T Consensus       371 ~~~~~v~l~eVe~G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~Ge  433 (581)
T 4eql_A          371 DKNDVVDLEDVKLGCTYEPVVTNF---AGLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-DSD  433 (581)
T ss_dssp             CCSSCEEGGGCCTTCEEEEEEECS---SSCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECS-SSC
T ss_pred             CCCcEeCHHHcCCCceEEEEEeec---cceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe-eee
Confidence             11     2233567899999874   23332             99999999975    4579999999999997 799


Q ss_pred             eechHHHHHHHhc
Q 005867          526 YVALEYLENVYCV  538 (673)
Q Consensus       526 ~v~~~~iE~~l~~  538 (673)
                      +++..+||++|.+
T Consensus       434 kl~~~~v~~al~~  446 (581)
T 4eql_A          434 KTNEEDLFKAVSQ  446 (581)
T ss_dssp             CEEHHHHHHHHHH
T ss_pred             ECCHHHHHHHHHH
Confidence            9999999999964

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.64  E-value=9.7e-07  Score=95.87  Aligned_cols=158  Identities=12%  Similarity=0.096  Sum_probs=91.3

Q ss_pred             Ccee---EEEEcCCCCCHHHHHHHHHhc-CCcee-eecCCCCCCCcccccCCCCccccCCcCC-Cccc-eeEEEeecCCC
Q 005867          383 GRLR---LVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSVY-SELRLEEVPEM  455 (673)
Q Consensus       383 ~~lr---~i~~~G~~l~~~~~~~~~~~~-g~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~-~~v~i~~~~~~  455 (673)
                      ++++   .++.||  + ......++..+ +.+++ ..|++||+-. .....+.  ..+...+. .+++ .=...++.++.
T Consensus       302 Pnlk~l~~~~tG~--~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~-gi~~~p~--~~p~~~~~~L~p~~~ffEFIP~~~~  375 (609)
T 4b2g_A          302 PNTKYLDVIVTGA--M-AQYIPTLDYYSGGLPLACTMYASSECYF-GLNLNPM--SKPSEVSYTIMPNMAYFEFLPHEHS  375 (609)
T ss_dssp             TTCCEEEEECSGG--G-GGGHHHHHHHHTSCCEECCEEECSSCEE-EECSCTT--SCGGGCCEEECTTSCEEEEEEGGGT
T ss_pred             CCCcEEEEEccCC--h-HHHHHHHHHHcCCCccccCcccccceee-eeecCCC--CCcccCceeecCCcEEEEEEecccc
Confidence            5644   445555  2 33445555555 67777 8999999732 2221111  11111111 1121 12223332211


Q ss_pred             ------C-------CCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECC----CCcEEEeecCCCe
Q 005867          456 ------G-------YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNL  518 (673)
Q Consensus       456 ------~-------~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~----~G~l~~~GR~~d~  518 (673)
                            .       ...+..|+.+||.++.-   .|+|+             |++||+.++..    ..++.|+||.+++
T Consensus       376 ~~~~~~~~~~~~v~l~eVe~G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~  439 (609)
T 4b2g_A          376 SIPLSRDSPPRLVDLAHVEVGKEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVL  439 (609)
T ss_dssp             TSCCCSSSCCCCEEGGGCCTTCEEEEEEECT---TSCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCC
T ss_pred             ccccccCCCCccccHhHcCCCCeEEEehhhh---hhhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCe
Confidence                  0       12244667899999763   35443             99999999973    4689999999999


Q ss_pred             EEcCCceeechHHHHHHHhc------Cc--CcceEEEEecCC--CCeEEEEEecC
Q 005867          519 IKISQGEYVALEYLENVYCV------AP--IIEDIWVYGDSL--KSMLVAVVVPC  563 (673)
Q Consensus       519 i~~~~G~~v~~~~iE~~l~~------~p--~V~~~~v~~~~~--~~~~~a~v~~~  563 (673)
                      |++ .|+++++.+||+++..      ..  .|.|..++....  +..-+.++++.
T Consensus       440 l~~-~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~~~~p~Hyv~~wEl~  493 (609)
T 4b2g_A          440 LSI-DSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIPGHYVIYWELL  493 (609)
T ss_dssp             BCS-SSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred             EEc-cccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCCCCCCCcEEEEEEEe
Confidence            997 7999999999999952      22  345555544221  23445555553

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.48  E-value=1.3e-06  Score=94.38  Aligned_cols=162  Identities=19%  Similarity=0.118  Sum_probs=92.8

Q ss_pred             HcCCceeEE--EEcCCCCCHHHHHHHHHhc-CCcee-eecCCCCCCCcccccCCCCccccCCcCC-Cccce-eEEEeecC
Q 005867          380 RLGGRLRLV--ISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSVYS-ELRLEEVP  453 (673)
Q Consensus       380 ~~~~~lr~i--~~~G~~l~~~~~~~~~~~~-g~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~~-~v~i~~~~  453 (673)
                      .+-++++.|  +++|. + ......++..+ +.++. ..|++||+-. .....+  ...++..+. .+|+. =...++.+
T Consensus       299 ~lWPnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~-gi~~~p--~~~~~~~~~~L~p~~~ffEFiP~~  373 (581)
T 4epl_A          299 ALFPNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEGWI-AANVTP--RLSPEEATFAVIPNLGYFEFLPVS  373 (581)
T ss_dssp             HHCTTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTEEE-EECCCT--TSCTTTCCEEECTTSCEEEEEEC-
T ss_pred             HhCCCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceeccceee-eeecCC--CCCccccceeecCCcEEEEEEecc
Confidence            344677633  34442 2 33345565555 67777 8999999732 222111  111111121 12221 12222211


Q ss_pred             CC-C-------CCCCCCCCCceEEEecCCccccccCCchhhhhhccCCccccCceEEECC----CCcEEEeecCCCeEEc
Q 005867          454 EM-G-------YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKI  521 (673)
Q Consensus       454 ~~-~-------~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~----~G~l~~~GR~~d~i~~  521 (673)
                      +. .       ...+..|+.+||.++.-.   |.|+             |++||+.++..    ..++.|.||.++++++
T Consensus       374 ~~~~~~~~~v~l~eve~G~~YelviTt~~---GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~  437 (581)
T 4epl_A          374 ETGEGEEKPVGLTQVKIGEEYEVVITNYA---GLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSI  437 (581)
T ss_dssp             ------CCCEEGGGCCTTCEEEEEEESTT---SCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS
T ss_pred             cccCCCCceeeHHHcCCCCeEEEEEeecc---ceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEe
Confidence            11 1       123445678999998742   3332             99999999864    2479999999999998


Q ss_pred             CCceeechHHHHHHHhc------Cc--CcceEEEEecCC--CCeEEEEEecC
Q 005867          522 SQGEYVALEYLENVYCV------AP--IIEDIWVYGDSL--KSMLVAVVVPC  563 (673)
Q Consensus       522 ~~G~~v~~~~iE~~l~~------~p--~V~~~~v~~~~~--~~~~~a~v~~~  563 (673)
                       .|+++++.+||+++..      ..  .|.|..++....  +..-+.+.++.
T Consensus       438 -~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~hyv~~wE~~  488 (581)
T 4epl_A          438 -NIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYAIFWEIS  488 (581)
T ss_dssp             -SSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCEEEEEEEES
T ss_pred             -eeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCCcEEEEEeec
Confidence             7999999999999953      22  356666655322  23445555654

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=91.36  E-value=1.3  Score=46.43  Aligned_cols=107  Identities=13%  Similarity=0.062  Sum_probs=81.0

Q ss_pred             CCCCCceeeeecccCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--HhHHHHHHHHHhcCCeEee
Q 005867           55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVP  130 (673)
Q Consensus        55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~--~e~~~~~lA~~~~G~~~vp  130 (673)
                      .++.++.+..  ..|.+|..+  .+|...+...+..++..+...|+.++|++....+.+  .......++++..|+.+++
T Consensus        88 ~~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  165 (437)
T 2y27_A           88 PQDRISRIHA--SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP  165 (437)
T ss_dssp             CGGGCCEEEE--CCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred             ChhHeEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence            3455664433  266666543  678999988888888877778999999999988863  3334457888899999987


Q ss_pred             CCCCCChhhHHHHHhccCceEEEEcchhhhhhhc
Q 005867          131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS  164 (673)
Q Consensus       131 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~  164 (673)
                      ++.. +++.+...+++.++.++++.......+..
T Consensus       166 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~  198 (437)
T 2y27_A          166 FGGG-QTEKQVQLIQDFRPDIIMVTPSYMLSIAD  198 (437)
T ss_dssp             CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred             CCCC-CHHHHHHHHHHhCCCEEEECHHHHHHHHH
Confidence            7654 78889999999999999998887665543

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=90.70  E-value=1.5  Score=46.09  Aligned_cols=105  Identities=13%  Similarity=0.085  Sum_probs=80.3

Q ss_pred             CCCCceeeeecccCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--HhHHHHHHHHHhcCCeEeeC
Q 005867           56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPL  131 (673)
Q Consensus        56 pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~--~e~~~~~lA~~~~G~~~vpl  131 (673)
                      ++.++.+..  ..|.+|..+  .+|...+...+..++..+...|+.++|++...++.+  .......++++..|+.++++
T Consensus        91 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~  168 (443)
T 2y4o_A           91 REQVVRVHA--SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM  168 (443)
T ss_dssp             GGGCCEEEE--ECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred             hhheEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence            455554432  266677654  678999988888888877788999999999988864  33345578888899999887


Q ss_pred             CCCCChhhHHHHHhccCceEEEEcchhhhhhh
Q 005867          132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELL  163 (673)
Q Consensus       132 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~  163 (673)
                      +.. .++.+...+++.++.+++........+.
T Consensus       169 ~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~  199 (443)
T 2y4o_A          169 SGG-QTEKQVQLIRDFEPKIILVTPSYMLNLI  199 (443)
T ss_dssp             CSC-CHHHHHHHHHHHCCSEEEECHHHHHHHH
T ss_pred             CCC-CHHHHHHHHHHhCCcEEEECHHHHHHHH
Confidence            654 7888999999999999999887766553

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=89.80  E-value=2.6  Score=44.00  Aligned_cols=123  Identities=8%  Similarity=-0.058  Sum_probs=89.5

Q ss_pred             CCCceeeeecccCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--HhHHHHHHHHHhcCCeEeeCC
Q 005867           57 GNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPLY  132 (673)
Q Consensus        57 d~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~--~e~~~~~lA~~~~G~~~vpl~  132 (673)
                      +.+|++..  ..|.+|..+  .+|...+...+..++..+...|+.++|++....+-+  ...+..+++++..|+.+++.+
T Consensus        86 ~~~a~i~~--TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~  163 (436)
T 3qov_A           86 RDGVRIHS--SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA  163 (436)
T ss_dssp             HHEEEEEE--CSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred             CCeEEEEE--CCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence            45554433  266666544  678999998888888888888999999999988754  344556788889999988876


Q ss_pred             CCCChhhHHHHHhccCceEEEEcchhhhhhhccccc-----ccccceEEEEeCCC
Q 005867          133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTSL  182 (673)
Q Consensus       133 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~  182 (673)
                      .. .++.+...+++.++.+++........+......     ....++.++.-+..
T Consensus       164 ~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~  217 (436)
T 3qov_A          164 AG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEP  217 (436)
T ss_dssp             SC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSC
T ss_pred             CC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCc
Confidence            54 678899999999999999998877666443211     13456666665544

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=86.70  E-value=7  Score=41.58  Aligned_cols=122  Identities=7%  Similarity=0.007  Sum_probs=85.4

Q ss_pred             CCCCCceeeeecccCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHh-HHHHHHHHHhcCCeEeeC
Q 005867           55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ-WVEAMEACNALSLICVPL  131 (673)
Q Consensus        55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e-~~~~~lA~~~~G~~~vpl  131 (673)
                      .|+.+|++..  ..|.+|..+  .+|...+...+..+..   ..++.++|++...+|-.-. .+..+++++..|+.++..
T Consensus       161 ~~~d~a~i~~--TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~  235 (501)
T 3ipl_A          161 NLDDIASIMF--TSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV  235 (501)
T ss_dssp             CTTSEEEEEE--CCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred             CCCCeEEEEE--CCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence            4677776554  256666544  6788888776665544   3488999999988886533 233467788889998877


Q ss_pred             CCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCC
Q 005867          132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL  182 (673)
Q Consensus       132 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  182 (673)
                      + ..+++.+...+++.++.+++........+..........++.++.-+..
T Consensus       236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~~  285 (501)
T 3ipl_A          236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGAK  285 (501)
T ss_dssp             S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSSC
T ss_pred             C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCCC
Confidence            5 4678999999999999999999988777655433333355666555443

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=80.19  E-value=7.1  Score=39.57  Aligned_cols=106  Identities=14%  Similarity=0.066  Sum_probs=71.2

Q ss_pred             CCCCCceeeeecccCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH--hHHHHHHHHHhcCCeEee
Q 005867           55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP--QWVEAMEACNALSLICVP  130 (673)
Q Consensus        55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~--e~~~~~lA~~~~G~~~vp  130 (673)
                      .++.++.+..  ..|.+|..+  .+|...+...+..++..+...|+.++|++...+|-+.  --....++++..|+.+++
T Consensus        89 ~~~~~a~i~~--TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~  166 (369)
T 3hgu_A           89 PADSHPQVYE--SGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS  166 (369)
T ss_dssp             CTTCCCEEEE--ECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred             CccccEEEEE--CCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence            3455565543  266666654  5688888888777766677779999999999988632  223344555888996665


Q ss_pred             CCCCCChh-----------------------hHHHHHhccCceEEEEcchhhhhhhc
Q 005867          131 LYDTLGPG-----------------------AVNFILDHAEIDFVFVQDKKVKELLS  164 (673)
Q Consensus       131 l~~~~~~~-----------------------~l~~~l~~~~~~~vi~~~~~~~~~~~  164 (673)
                      ..  ..+.                       .+...+++.++.++++.......+.+
T Consensus       167 ~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~  221 (369)
T 3hgu_A          167 ID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLK  221 (369)
T ss_dssp             CC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTT
T ss_pred             cc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHh
Confidence            43  2343                       66668899999999998887776643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	673
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	2e-67
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	6e-62
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	6e-56
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	2e-48
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	7e-42
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	2e-40
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	7e-34

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  231 bits (589), Expect = 2e-67
 Identities = 89/554 (16%), Positives = 173/554 (31%), Gaps = 77/554 (13%)

Query: 37  VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS 96
            D  LN A +     +Q+      + W      +       +Y+E++ +V +  + L   
Sbjct: 67  EDGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHI---SYRELHRDVCRFANTLLDL 123

Query: 97  GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156
           G + G  V IY    P+   AM AC  +  +   ++    P AV   +  +    V   D
Sbjct: 124 GIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITAD 183

Query: 157 KKVKELLSPDCRSA-----QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE 211
           + V+   S   +       +   V      +  ++    +        W   L      E
Sbjct: 184 EGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPE 243

Query: 212 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271
            +       +   I+YTSG++G PKGV+ T      + +    ++  +       D+Y  
Sbjct: 244 HQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDY----HPGDIYWC 299

Query: 272 FLPLAHILDRVIEEYF-FRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEK 325
              +  +       Y     GA+   + G         +   + + +  +L   P     
Sbjct: 300 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIR- 358

Query: 326 IHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL 385
                                       A M  G K  E +  +               L
Sbjct: 359 ----------------------------ALMAEGDKAIEGTDRS--------------SL 376

Query: 386 RLVISGGAPLSTEVEEFLRVTC---CAFLVQGYGLTETCGPTTVCFPDEMCM-VGTAGPV 441
           R++ S G P++ E  E+           +V  +  TET G      P  + +  G+A   
Sbjct: 377 RILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRP 436

Query: 442 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESII---DGWFH 496
               +  L  V   G  P +    G + +           + + +   ++        + 
Sbjct: 437 FFGVQPAL--VDNEG-HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYF 493

Query: 497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLK 553
           +GD  +   +G   I  R  +++ +S G  +    +E+     P I +  V G       
Sbjct: 494 SGDGARRDEDGYYWITGRVDDVLNVS-GHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG 552

Query: 554 SMLVAVVVPCEEDT 567
             + A V     + 
Sbjct: 553 QAIYAYVTLNHGEE 566

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  213 bits (543), Expect = 6e-62
 Identities = 126/553 (22%), Positives = 194/553 (35%), Gaps = 90/553 (16%)

Query: 33  GFPSV--DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIV 90
            FPS   D +LN  WD    +   +    ++          G     TY EVY+   +++
Sbjct: 1   AFPSTMMDEELNL-WDFLERAAALFGRKEVV-----SRLHTGEVHRTTYAEVYQRARRLM 54

Query: 91  SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEID 150
             LRA G   G RV   G N  + +EA  A   +  +       L P  + +IL+HAE D
Sbjct: 55  GGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAE-D 113

Query: 151 FVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 210
            V + D  +  L+       + ++  V       E                         
Sbjct: 114 KVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE--------------GYLAYEEALGE 159

Query: 211 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL 270
           E + +       C + YT+GT+G PKGVV +H  +                 ++  DV L
Sbjct: 160 EADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAAS---LVDGTALSEKDVVL 216

Query: 271 SFLPLAHILDRVIEEYFFRRGASVGYY--HGDLNALRDDLMELKPTLLAGVPRVFEKIHE 328
             +P+ H+    +       GA         D  +L +       T  AGVP V+     
Sbjct: 217 PVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVW----- 271

Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLV 388
                                                     L  + +        LR +
Sbjct: 272 ----------------------------------------LALADYLESTGHRLKTLRRL 291

Query: 389 ISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP----------DEMCMVGTA 438
           + GG+     +           + QGYGLTET       F           +++ +    
Sbjct: 292 VVGGSAAPRSLIARFERMGVE-VRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKT 350

Query: 439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHT 497
           G       LR+ +  E    P D    GEV ++G  +  GYY N + TR ++  DG+F T
Sbjct: 351 GLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRT 409

Query: 498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKS 554
           GDI      G V+I DR K+LIK   GE+++   LEN     P +++  V        + 
Sbjct: 410 GDIAVWDEEGYVEIKDRLKDLIKSG-GEWISSVDLENALMGHPKVKEAAVVAIPHPKWQE 468

Query: 555 MLVAVVVPCEEDT 567
             +AVVVP  E  
Sbjct: 469 RPLAVVVPRGEKP 481

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  199 bits (506), Expect = 6e-56
 Identities = 93/559 (16%), Positives = 182/559 (32%), Gaps = 84/559 (15%)

Query: 37  VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS 96
           ++  LN  ++       K P  + + +     G+       TYKE+ EEV Q+   L  S
Sbjct: 54  LNGQLNACYNCVDRHALKTPNKKAIIFEGDEPGQGYSI---TYKELLEEVCQVAQVLTYS 110

Query: 97  -GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ 155
            G   G  V +Y    P+ +  + A + +  I   ++      ++   ++  +   V   
Sbjct: 111 MGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITT 170

Query: 156 DK--------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLG 207
           D+        + K ++    R    +R ++ +     +    +V                
Sbjct: 171 DESNRGGKVIETKRIVDDALRETPGVRHVLVYR----KTNNPSVAFHAPRDLDWATEKKK 226

Query: 208 KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD 267
                   P    +   ++YTSG++G PKGV  +            L   ++      +D
Sbjct: 227 YKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGA----LLTMRYTFDTHQED 282

Query: 268 VYLSFLPLAHILDRVIEEYF-FRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPR 321
           V+ +   +  I       Y     G +   + G     + +   D + E K T     P 
Sbjct: 283 VFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPT 342

Query: 322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARL 381
                           R L+R     +  + L                            
Sbjct: 343 AL--------------RLLKRAGDSYIENHSLK--------------------------- 361

Query: 382 GGRLRLVISGGAPLSTEVEEFLR---VTCCAFLVQGYGLTETCGPTTVCFPDEMCMV--G 436
              LR + S G P++ EV E+           +V  Y  TE+           +  +  G
Sbjct: 362 --SLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPG 419

Query: 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTRESII--- 491
           +A       +  + + P  G         G + V+    +     +KN D   ++ +   
Sbjct: 420 SASFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPY 478

Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG-- 549
            G++ TGD      +G + I+ R  +++ +S G  ++   +E      PI+ +  V G  
Sbjct: 479 PGYYFTGDGAAKDKDGYIWILGRVDDVVNVS-GHRLSTAEIEAAIIEDPIVAECAVVGFN 537

Query: 550 -DSLKSMLVAVVVPCEEDT 567
            D     + A VV   + +
Sbjct: 538 DDLTGQAVAAFVVLKNKSS 556

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  176 bits (446), Expect = 2e-48
 Identities = 120/535 (22%), Positives = 195/535 (36%), Gaps = 73/535 (13%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRP----FVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA 98
           TA +    ++++Y         P    F D      +  TY E +E  +++  A++  G 
Sbjct: 18  TAGEQLHKAMKRYAL------VPGTIAFTDAHIEVNI--TYAEYFEMSVRLAEAMKRYGL 69

Query: 99  EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK 158
               R+ +   N  Q+   +     + +   P  D      +   ++ ++   VFV  K 
Sbjct: 70  NTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKG 129

Query: 159 VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ 218
           ++++L+      ++L ++     + ++      Q+     +        + + +     +
Sbjct: 130 LQKILN----VQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDR 185

Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
              I  IM +SG++G PKGV L H T     S     +  F +++  D   LS +P  H 
Sbjct: 186 DKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDTAILSVVPFHHG 243

Query: 279 LDRVIEEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
                   +   G   V  Y  +       L + K      VP +F              
Sbjct: 244 FGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFS------------- 290

Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                       K  L                               L  + SGGAPLS 
Sbjct: 291 ---------FFAKSTLIDKYDL-----------------------SNLHEIASGGAPLSK 318

Query: 398 E-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMG 456
           E  E   +      + QGYGLTET     +  P+     G  G V  + E ++ ++    
Sbjct: 319 EVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVVPFFEAKVVDLDTGK 377

Query: 457 YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRK 515
              ++    GE+CVRG  + SGY  NP+ T   I  DGW H+GDI     +    I+DR 
Sbjct: 378 TLGVNQR--GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRL 435

Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEEDT 567
           K+LIK   G  VA   LE++    P I D  V G   D    +  AVVV     T
Sbjct: 436 KSLIKYK-GYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKT 489

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  157 bits (396), Expect = 7e-42
 Identities = 91/530 (17%), Positives = 153/530 (28%), Gaps = 78/530 (14%)

Query: 41  LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEP 100
           + T  ++   +  + P          +          T+ E+   V  + + L A G  P
Sbjct: 1   MQTVNEMLRRAATRAPD------HCALAVPARGLRL-THAELRARVEAVAARLHADGLRP 53

Query: 101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK 160
             RV +   N    V A+ A + L  +   L   L    +  ++   E+    +   +  
Sbjct: 54  QQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV 113

Query: 161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF 220
                   S  R+  +                    PYS+           +E    +P 
Sbjct: 114 ADAIFQSGSGARIIFLGDLVRDGE------------PYSYGP--------PIEDPQREPA 153

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
               I YTSGT+G PK             S V     Q   +    +V L  +PL H++ 
Sbjct: 154 QPAFIFYTSGTTGLPKAA---IIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVG 210

Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
                              +                                        
Sbjct: 211 FFAVLVAALALDGTYVVVEEFRP------------------------------------- 233

Query: 341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 400
                  + + ++  +       +A   A   A   +K      LR V   GA +   V 
Sbjct: 234 -VDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLK---LDSLRHVTFAGATMPDAVL 289

Query: 401 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPL 460
           E +        V  YG TE      +  P     +       V     +     +     
Sbjct: 290 ETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVR---IVRIGGGVDEIVA 346

Query: 461 DDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
           +      +     + F GY   P  T E + DGW+ T D+    P G V+I+ R  ++I 
Sbjct: 347 NGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMII 406

Query: 521 ISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEEDT 567
              GE +    +E V   AP + ++ V G         + A VVP   +T
Sbjct: 407 S-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGET 455

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  152 bits (385), Expect = 2e-40
 Identities = 85/535 (15%), Positives = 166/535 (31%), Gaps = 101/535 (18%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
           T   +F   V K P N  +      + +       TY E+  +  Q+       G     
Sbjct: 24  TIHQLFEEQVSKRPNNVAIVCE---NEQL------TYHELNVKANQLARIFIEKGIGKDT 74

Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
            VGI           + A        VP+        + +ILD ++   +  Q   V  +
Sbjct: 75  LVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLI 134

Query: 163 LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNI 222
                                       +Q   +   ++E     +      +P +  ++
Sbjct: 135 --------------------------HNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDL 168

Query: 223 CTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV 282
             ++YTSGT+G+PKG +L H+ I+           +    +T  D    F  ++      
Sbjct: 169 AYVIYTSGTTGNPKGTMLEHKGISNLK-----VFFENSLNVTEKDRIGQFASISFDASVW 223

Query: 283 IEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342
                   GAS+                                        ++      
Sbjct: 224 EMFMALLTGASLYIIL------------------------------------KDTINDFV 247

Query: 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEF 402
           +    + + ++  + +            +L+ +            +I+ G+  S  +   
Sbjct: 248 KFEQYINQKEITVITLPPTYVVHLDPERILSIQT-----------LITAGSATSPSLVNK 296

Query: 403 LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDD 462
            +       +  YG TET    T     +  +  +    +     ++  V E        
Sbjct: 297 WKEKVT--YINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENL-QLKSV 353

Query: 463 PPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNGVVKIIDRK 515
              GE+C+ G+ L  GY+K P+LT +  +       +  + TGD  + L +G ++ + R 
Sbjct: 354 GEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRI 413

Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEEDT 567
            N +KI  G  V LE +E++      I +  V        +  L A  V  +   
Sbjct: 414 DNQVKIR-GHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIP 467

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  134 bits (337), Expect = 7e-34
 Identities = 90/533 (16%), Positives = 165/533 (30%), Gaps = 81/533 (15%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
           T  D+      KY        R  +    G   W +Y+E+     ++ +  +  G +   
Sbjct: 26  TFGDLLRDRAAKYGD------RIAIT--CGNTHW-SYRELDTRADRLAAGFQKLGIQQKD 76

Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
           RV +   N  ++ E + A   L  + V    +     + +  + AE     + D      
Sbjct: 77  RVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFD 136

Query: 163 LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ--PF 220
                R  Q               K   ++  I     +EFL L  ++   +  P+    
Sbjct: 137 YRSLARQVQ--------------SKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSS 182

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           ++  +  + G++G  K +  TH+     +             +    +    +   + L 
Sbjct: 183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTV---YLAALPMAHNYPLS 239

Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
                     G  V                                            P 
Sbjct: 240 SPGVLGVLYAGGRVVLSP---------------------------------------SPS 260

Query: 341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 400
               F  + + K+    +             +     +      L+++  GGA  S E  
Sbjct: 261 PDDAFPLIEREKVTITALVPPL-----AMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAA 315

Query: 401 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELRLEEVPEMGYSP 459
             ++      L Q +G+ E     T     E  +V T G P+S Y E R+    +     
Sbjct: 316 RRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRV--WDDHD-RD 372

Query: 460 LDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDRKKNL 518
           +     G +  RG     GYYK  +    S  + G++ TGDI ++  +G + +  R K+ 
Sbjct: 373 VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQ 432

Query: 519 IKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEEDTK 568
           I    GE VA E +EN     P + D  +       L       ++P +E  K
Sbjct: 433 INRG-GEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPK 484

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	673
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=2.6e-71  Score=625.39  Aligned_cols=523  Identities=17%  Similarity=0.188  Sum_probs=412.4

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      .|-...+|+++++++||++|+++.   ...++..+++||+||.+++.++|++|++.|+++||+|+++++|++++++++||
T Consensus        71 ~N~~~n~ldrh~~~~~d~~Ali~~---~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA  147 (643)
T d1pg4a_          71 LNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA  147 (643)
T ss_dssp             ECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhCCCCEEEEEE---ecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHH
Confidence            456678888999999999999986   44556668999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhh---------hcc-cccccccceEEEEeCCCcHHHHHHH
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL---------LSP-DCRSAQRLRVMVCFTSLTAEQKEMA  190 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~---------~~~-~~~~~~~~~~v~~~~~~~~~~~~~~  190 (673)
                      |+++|++++|+++.++++++.+++++++++++|+++......         ... .......+..++.+.......    
T Consensus       148 ~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~----  223 (643)
T d1pg4a_         148 CARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI----  223 (643)
T ss_dssp             HHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC----
T ss_pred             HHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCccc----
Confidence            999999999999999999999999999999999987532211         000 011223445555554332100    


Q ss_pred             hhCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhh-hhhhhccccCCCCCCcEE
Q 005867          191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVY  269 (673)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~d~~  269 (673)
                      .........+.+..... .........+++++++|+|||||||.||||+++|++++..... ....+     ++.++|++
T Consensus       224 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~-----~~~~~d~~  297 (643)
T d1pg4a_         224 DWQEGRDLWWRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDIY  297 (643)
T ss_dssp             CCCBTTEEEHHHHHTTS-CSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCEE
T ss_pred             ccccccchhhhhhhccc-CcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhh-----CCCCCCEE
Confidence            00011233344444433 2333445568899999999999999999999999997655443 34444     78899999


Q ss_pred             EEecchHhHHHHHH-hHHHhhcCcEEEEecC-----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHH
Q 005867          270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR  343 (673)
Q Consensus       270 l~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~  343 (673)
                      ++.+|++|.+++.. ++.+|+.|+++++++.     ++..+++.++++++|+++++|+++..|.+.....          
T Consensus       298 ~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~----------  367 (643)
T d1pg4a_         298 WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA----------  367 (643)
T ss_dssp             EECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGG----------
T ss_pred             EEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchh----------
Confidence            99999999999875 5567999999999764     7889999999999999999999999886532110          


Q ss_pred             HHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcC---CceeeecCCCCC
Q 005867          344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTET  420 (673)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g---~~v~~~YG~tE~  420 (673)
                                               .+..        .+++||.++++|+++++++.+++.+.++   +++++.||+||+
T Consensus       368 -------------------------~~~~--------dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~  414 (643)
T d1pg4a_         368 -------------------------IEGT--------DRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTET  414 (643)
T ss_dssp             -------------------------TTTC--------CCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGG
T ss_pred             -------------------------cccc--------CCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhc
Confidence                                     1111        2258999999999999999999999884   779999999999


Q ss_pred             CCcccccCCCC-ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEec--CCccccccCCchhhhhhc---cCCc
Q 005867          421 CGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGW  494 (673)
Q Consensus       421 ~~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~g--p~~~~gy~~~~~~~~~~~---~~g~  494 (673)
                      ++.++....+. ....+++|+|++|++++|+| +++.  +++.++.|||+|+|  |+++.||+++++.+...+   .+||
T Consensus       415 g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~--~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~  491 (643)
T d1pg4a_         415 GGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGH--PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNM  491 (643)
T ss_dssp             SSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCC--BCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTS
T ss_pred             cceEEecCCCccCCCCCccccccCCCEEEEEC-CCCC--CCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCe
Confidence            98776554433 44568999999999999999 6655  45556899999999  568899999998887765   5799


Q ss_pred             cccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHH
Q 005867          495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWA  571 (673)
Q Consensus       495 ~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~  571 (673)
                      |+|||+|++|+||+|+++||+||+||+ +|++|+|.+||++|.+||+|.||+|++.+++   +.++|||+++++..    
T Consensus       492 ~~TGDl~~~d~dG~l~i~GR~dd~ik~-~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~----  566 (643)
T d1pg4a_         492 YFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEE----  566 (643)
T ss_dssp             EEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC----
T ss_pred             EEcCCEEEECCCceEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCCCC----
Confidence            999999999999999999999999997 7999999999999999999999999997654   48999999987541    


Q ss_pred             HHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchH
Q 005867          572 YSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRN  651 (673)
Q Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~  651 (673)
                                   ...++.+    +|+++++. +             |++|++|+.|++++      .+|+|++||++|+
T Consensus       567 -------------~~~~~~~----~i~~~~~~-~-------------L~~~~vP~~i~~v~------~lP~T~sGKi~R~  609 (643)
T d1pg4a_         567 -------------PSPELYA----EVRNWVRK-E-------------IGPLATPDVLHWTD------SLPKTRSGKIMRR  609 (643)
T ss_dssp             -------------CCHHHHH----HHHHHHHH-H-------------TCGGGCCSEEEECS------CCCBCTTSCBCHH
T ss_pred             -------------CCHHHHH----HHHHHHHh-h-------------CCcccCccEEEEEC------CCCCCCCcCccHH
Confidence                         2222222    23333332 3             99999999999883      3469999999999


Q ss_pred             HHHHHHHHHHHHH
Q 005867          652 KLLIYYQVEIDQL  664 (673)
Q Consensus       652 ~l~~~~~~~~~~l  664 (673)
                      +|++++..+...+
T Consensus       610 ~Lr~~~~~~~~~~  622 (643)
T d1pg4a_         610 ILRKIAAGDTSNL  622 (643)
T ss_dssp             HHHHHHHTC----
T ss_pred             HHHHHhcCCcccc
Confidence            9999997654333

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.5e-70  Score=619.05  Aligned_cols=535  Identities=18%  Similarity=0.182  Sum_probs=407.5

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAME  119 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~-~~gv~~gd~V~i~~~~~~e~~~~~l  119 (673)
                      .|...++|+++|+++||++|+++.   ...++..+++||+||.+++.++|++|+ ++|+++||+|+++++|++++++++|
T Consensus        58 lN~~~n~ldr~a~~~pd~~Ali~~---~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~l  134 (640)
T d1ry2a_          58 LNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLL  134 (640)
T ss_dssp             ECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhCCCCEEEEEE---ecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            366799999999999999999986   444556689999999999999999997 5799999999999999999999999


Q ss_pred             HHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhh--------hcccccccccceEEEEeCCCcHHHHHHHh
Q 005867          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL--------LSPDCRSAQRLRVMVCFTSLTAEQKEMAV  191 (673)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  191 (673)
                      ||+++|++++|+++.++++++.++++.+++++++++.......        ........................   ..
T Consensus       135 A~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  211 (640)
T d1ry2a_         135 AISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS---VA  211 (640)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSS---CC
T ss_pred             HhccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeeccccccc---cc
Confidence            9999999999999999999999999999999999987532211        111111222233333322211100   00


Q ss_pred             hCCCceecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhh-hhccccCCCCCCcEEE
Q 005867          192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL-FLDQFEDKMTVDDVYL  270 (673)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~-~~~~~~~~~~~~d~~l  270 (673)
                      ........+....... .......+..++++++|+|||||||.||||+++|++++........ .+     .+..+|+++
T Consensus       212 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~-----~~~~~d~~l  285 (640)
T d1ry2a_         212 FHAPRDLDWATEKKKY-KTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVFF  285 (640)
T ss_dssp             CCSSSEEEHHHHHTTS-CSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEEE
T ss_pred             cccccccccccccccc-ccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhc-----CCCccccee
Confidence            0001112222222222 2333445567889999999999999999999999998877554433 33     688999999


Q ss_pred             EecchHhHHHHHH-hHHHhhcCcEEEEecC-----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHH
Q 005867          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI  344 (673)
Q Consensus       271 ~~~p~~~~~gl~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~  344 (673)
                      +.+|++|.+|+.. ++.++..|+++++++.     ++..+++.++++++|+++++|+++..|.+...             
T Consensus       286 ~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-------------  352 (640)
T d1ry2a_         286 TAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD-------------  352 (640)
T ss_dssp             ECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT-------------
T ss_pred             eccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccc-------------
Confidence            9999999999765 5667999999888764     78899999999999999999999987743210             


Q ss_pred             HHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcC---CceeeecCCCCCC
Q 005867          345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTETC  421 (673)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g---~~v~~~YG~tE~~  421 (673)
                                            ...+..        .+++||.+++||+++++++.+++.+.+|   .++++.||+||++
T Consensus       353 ----------------------~~~~~~--------~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~  402 (640)
T d1ry2a_         353 ----------------------SYIENH--------SLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESG  402 (640)
T ss_dssp             ----------------------TSSSSC--------CCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTC
T ss_pred             ----------------------cccccC--------CCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccc
Confidence                                  001111        1259999999999999999999999885   5699999999999


Q ss_pred             CcccccCCCC--ccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEec--CCccccccCCchhhhhhc---cCCc
Q 005867          422 GPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGW  494 (673)
Q Consensus       422 ~~~~~~~~~~--~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~g--p~~~~gy~~~~~~~~~~~---~~g~  494 (673)
                      ..........  ....+++|.|++|++++|+| ++++....+.+..|||++++  |+++.|||++++.+.+.|   .+||
T Consensus       403 ~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw  481 (640)
T d1ry2a_         403 SHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGY  481 (640)
T ss_dssp             SCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTS
T ss_pred             cccccccCCCcCCCCCcccccccCCceEEEEe-CCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCCe
Confidence            8766554432  34558999999999999999 77776666666789999998  689999999999999887   3589


Q ss_pred             cccCceEEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHH
Q 005867          495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWA  571 (673)
Q Consensus       495 ~~TGDlg~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~  571 (673)
                      |+|||+|++|+||+|+++||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+++++......
T Consensus       482 ~~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~~~~  560 (640)
T d1ry2a_         482 YFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTA  560 (640)
T ss_dssp             EEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC--------
T ss_pred             EEcCCceeECCCCCEEEEEcCCCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEEcCCCCcccc
Confidence            999999999999999999999999996 7999999999999999999999999997754   479999999886421100


Q ss_pred             HHcCCCCcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchH
Q 005867          572 YSNGHAGSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRN  651 (673)
Q Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~  651 (673)
                      .              .+..+.+.++|.++++. +             |++|++|+.|++++      .+|+|++|||+|+
T Consensus       561 ~--------------~~~~~~l~~~l~~~~~~-~-------------L~~~~~P~~i~~v~------~lP~T~sGKi~R~  606 (640)
T d1ry2a_         561 T--------------DDELQDIKKHLVFTVRK-D-------------IGPFAAPKLIILVD------DLPKTRSGKIMRR  606 (640)
T ss_dssp             ------------------CCSHHHHHHHHHHH-H-------------TCTTTSCSEEEECS------CCCBCTTSCBCHH
T ss_pred             c--------------hHHHHHHHHHHHHHHHh-h-------------CCCCCCceEEEEeC------CCCCCCCcCccHH
Confidence            0              01111233344444432 3             99999999999983      3469999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 005867          652 KLLIYYQVEIDQLYE  666 (673)
Q Consensus       652 ~l~~~~~~~~~~ly~  666 (673)
                      +|+++++++.+++.+
T Consensus       607 ~Lr~~~~~~~~~~~d  621 (640)
T d1ry2a_         607 ILRKILAGESDQLGD  621 (640)
T ss_dssp             HHHHSCC--------
T ss_pred             HHHHHHhCCccccCC
Confidence            999999887777765

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.3e-69  Score=601.81  Aligned_cols=506  Identities=24%  Similarity=0.305  Sum_probs=386.1

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHH
Q 005867           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (673)
Q Consensus        39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~  118 (673)
                      ++..||+++|+++|+++||++|+++.   +  +++++++||+||.+++.++|++|.+.|+++||+|+++++|++++++++
T Consensus         8 ~~~~~l~~~l~~~a~~~pd~~av~~~---~--~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~   82 (534)
T d1v25a_           8 DEELNLWDFLERAAALFGRKEVVSRL---H--TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAY   82 (534)
T ss_dssp             CCCCCTHHHHHHHHHHSTTCEEEEEC---T--TSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHcCCCeEEEEe---c--CCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHH
Confidence            44568999999999999999999976   3  355678999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCcee
Q 005867          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (673)
Q Consensus       119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  198 (673)
                      |||+++|++++|+++.++.+++.++|+.+++++++++........... .........+........          ...
T Consensus        83 lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~  151 (534)
T d1v25a_          83 FAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR-GELKTVQHFVVMDEKAPE----------GYL  151 (534)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHG-GGCSSCCEEEESSSCCCT----------TCE
T ss_pred             HHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHh-hcccccceeEEeeccccc----------ccc
Confidence            999999999999999999999999999999999999998777654332 233344444444332211          011


Q ss_pred             cHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhH
Q 005867          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (673)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~  278 (673)
                      ..... .   ..........++++++++|||||||.||+|.++|.+++..........   .......+++++.+|++|.
T Consensus       152 ~~~~~-~---~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~  224 (534)
T d1v25a_         152 AYEEA-L---GEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVD---GTALSEKDVVLPVVPMFHV  224 (534)
T ss_dssp             EHHHH-C---CSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTT---TTCCCTTCEEEECSCTTSH
T ss_pred             ccccc-c---cccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhc---ccccccccccccccchhhh
Confidence            11111 0   112233455788999999999999999999999999987654433221   2256789999999999999


Q ss_pred             HHHHHhHHHhhcCcEEEEecC--CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh
Q 005867          279 LDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (673)
Q Consensus       279 ~gl~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (673)
                      +++...+..+..|+++++...  ++..+...+.++++|++.++|.++..+........                      
T Consensus       225 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~----------------------  282 (534)
T d1v25a_         225 NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG----------------------  282 (534)
T ss_dssp             HHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT----------------------
T ss_pred             ccccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhcccc----------------------
Confidence            999888888888888887765  89999999999999999999999998876533221                      


Q ss_pred             hhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCc----
Q 005867          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM----  432 (673)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~----  432 (673)
                                             ..+++||.+++||++++++..+++++ ++.++++.||+||++..++.......    
T Consensus       283 -----------------------~~~~~lr~~~~gG~~~~~~~~~~~~~-~~~~i~~~yG~te~~~~~~~~~~~~~~~~~  338 (534)
T d1v25a_         283 -----------------------HRLKTLRRLVVGGSAAPRSLIARFER-MGVEVRQGYGLTETSPVVVQNFVKSHLESL  338 (534)
T ss_dssp             -----------------------CCCSSCCEEEECSSCCCHHHHHHHHH-TTCEEEEEEECGGGSSEEEECCCCGGGTTS
T ss_pred             -----------------------ccccceeEEEEecCCCCHHHHHHHHH-hCCeeeeeccccccccceeecccCcccccc
Confidence                                   12259999999999999999999886 59999999999999998776543321    


Q ss_pred             ------cccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCceEEECC
Q 005867          433 ------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILP  505 (673)
Q Consensus       433 ------~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~  505 (673)
                            ...+++|+|++|++++|+| +++...+.+.++.|||+|+|++++.||+++++.+...| .+|||+|||+|++++
T Consensus       339 ~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~  417 (534)
T d1v25a_         339 SEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE  417 (534)
T ss_dssp             CHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECT
T ss_pred             CccccccccccceeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeEECC
Confidence                  2347899999999999999 88888888888899999999999999999999999988 889999999999999


Q ss_pred             CCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHH
Q 005867          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLE  582 (673)
Q Consensus       506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~  582 (673)
                      ||.+++.||.+|+|++ +|++|+|.+||++|.+||+|.||+|++.+++   +.++|+|+++.+..               
T Consensus       418 ~G~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~~~~---------------  481 (534)
T d1v25a_         418 EGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKP---------------  481 (534)
T ss_dssp             TCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC----------------------
T ss_pred             CccEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCCCCC---------------
Confidence            9999999999999996 8999999999999999999999999986654   36888888876431               


Q ss_pred             HhccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 005867          583 LCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  659 (673)
Q Consensus       583 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~  659 (673)
                        ..+++.+.+       ++ ++             ||+|++|..|++++      .+|+|++|||+|++|+++|++
T Consensus       482 --~~~~~~~~~-------~~-~~-------------l~~~~~P~~i~~~~------~lP~t~~GKi~R~~lr~~~~~  529 (534)
T d1v25a_         482 --TPEELNEHL-------LK-AG-------------FAKWQLPDAYVFAE------EIPRTSAGKFLKRALREQYKN  529 (534)
T ss_dssp             ----------------------C-------------CCTTTSCSBC--------------------CCTTHHHHSTT
T ss_pred             --CHHHHHHHH-------HH-hc-------------CCcCCCccEEEEEC------CCCCCCCccccHHHHHHHHHh
Confidence              111222211       11 24             99999999999883      346999999999999998854

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=1.1e-67  Score=586.95  Aligned_cols=516  Identities=25%  Similarity=0.274  Sum_probs=397.3

Q ss_pred             CCCCCCCCCCcHHHHHHHHHHhC---CCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcC
Q 005867           33 GFPSVDSDLNTAWDIFSMSVQKY---PGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA  109 (673)
Q Consensus        33 ~~~~~~~~~~tl~~~l~~~a~~~---pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~  109 (673)
                      |-|-.|-...|+.++|.++++++   |+++|+++.   .+.    +++||+||.+++.++|++|+++|+++||+|+++++
T Consensus         8 p~p~~p~~~~t~~~~l~~~~~~~~~~P~~~a~~d~---~~~----~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~   80 (541)
T d1lcia_           8 PAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDA---HIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSE   80 (541)
T ss_dssp             CCCSSCCCSSCHHHHHHHHHHHHHTSTTCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHhhCCCCCeEEEEeC---CCC----eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeC
Confidence            33444444679999999999888   666676643   222    57999999999999999999999999999999999


Q ss_pred             CcHhHHHHHHHHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHH
Q 005867          110 NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM  189 (673)
Q Consensus       110 ~~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  189 (673)
                      |++++++++|||+++|++++|+++.++.+++.++|+.++++++|++++....+.+.. ...+....++..+....     
T Consensus        81 ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----  154 (541)
T d1lcia_          81 NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQ-KKLPIIQKIIIMDSKTD-----  154 (541)
T ss_dssp             SCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHH-HHCTTCCEEEETTCSSC-----
T ss_pred             CCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhcc-ccccccceeeeecCCcc-----
Confidence            999999999999999999999999999999999999999999999998877664433 34455566666554322     


Q ss_pred             HhhCCCceecHHHHHhcC------ccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCC
Q 005867          190 AVQTGIKPYSWDEFLHLG------KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM  263 (673)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~  263 (673)
                          ......+.++....      .....+.....++++++++|||||||.||+|.++|++++.........+..  ...
T Consensus       155 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~--~~~  228 (541)
T d1lcia_         155 ----YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFG--NQI  228 (541)
T ss_dssp             ----BTTBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTS--CCC
T ss_pred             ----ccccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhccc--ccc
Confidence                11222333332211      111222334567899999999999999999999999998877665543311  256


Q ss_pred             CCCcEEEEecchHhHHHHHHhHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHH
Q 005867          264 TVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR  342 (673)
Q Consensus       264 ~~~d~~l~~~p~~~~~gl~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~  342 (673)
                      ..++++++.+|++|.+++...+..+..++..+.... +.......+..+++|.++++|.++..+.......         
T Consensus       229 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~---------  299 (541)
T d1lcia_         229 IPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLID---------  299 (541)
T ss_dssp             CTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGG---------
T ss_pred             cccccccccccccccccccccccccccccccccccccccchhHHHHhhhhccccccCcccccccccccccc---------
Confidence            788999999999999999888888888888777666 8999999999999999999999998876421110         


Q ss_pred             HHHHHHHHHHHHHhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCC-ceeeecCCCCCC
Q 005867          343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETC  421 (673)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~-~v~~~YG~tE~~  421 (673)
                                                  .        ...++++.+++||+++++...+++.+.++. .+++.||+||++
T Consensus       300 ----------------------------~--------~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~  343 (541)
T d1lcia_         300 ----------------------------K--------YDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETT  343 (541)
T ss_dssp             ----------------------------G--------SCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGS
T ss_pred             ----------------------------c--------cccccceEEEecccccccccccccccccCCceeeecCCccccC
Confidence                                        0        112589999999999999999999998864 689999999999


Q ss_pred             CcccccCCCCccccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCce
Q 005867          422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDI  500 (673)
Q Consensus       422 ~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDl  500 (673)
                      +.++........ .+++|+|+++++++|+| ++.+ .+++.|+.|||+|+|++++.||+++++.+...+ .+|||+|||+
T Consensus       344 ~~~~~~~~~~~~-~~svG~p~~~~~~~i~d-~d~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl  420 (541)
T d1lcia_         344 SAILITPEGDDK-PGAVGKVVPFFEAKVVD-LDTG-KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDI  420 (541)
T ss_dssp             SCSEECCCC----CCCCBEECTTCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEE
T ss_pred             ceEEecCcccCC-CCccccccCCCEEEEEE-CCCC-cCCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCe
Confidence            988876655443 48999999999999999 4333 456667899999999999999999999888877 6899999999


Q ss_pred             EEECCCCcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCC
Q 005867          501 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHA  577 (673)
Q Consensus       501 g~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~  577 (673)
                      |+++++|.+++.||.+|+|++ +|++|+|.+||++|.+||+|.||+|++.+++   +.++|+|+++++..          
T Consensus       421 ~~~~~~G~~~~~GR~~d~i~~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~----------  489 (541)
T d1lcia_         421 AYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKT----------  489 (541)
T ss_dssp             EEECTTCCEEEC-----CEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC----------
T ss_pred             eEEcCCeEEEEeeeecCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCCC----------
Confidence            999999999999999999997 7999999999999999999999999986543   47899999876531          


Q ss_pred             CcHHHHhccHHHHHHHHHHHHHHHHhcccccccccccccccCccc-eeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 005867          578 GSFLELCSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGF-EHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  656 (673)
Q Consensus       578 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~-~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~  656 (673)
                            .+.++++++++++                      |+++ ++|+.|++++      .+|+|++||++|++|+++
T Consensus       490 ------~~~~~l~~~~~~~----------------------l~~~~~~p~~i~~v~------~lP~t~~GKi~r~~l~~~  535 (541)
T d1lcia_         490 ------MTEKEIVDYVASQ----------------------VTTAKKLRGGVVFVD------EVPKGLTGKLDARKIREI  535 (541)
T ss_dssp             ------CCHHHHHHHHHHH----------------------SCGGGSCTTEEEEES------SCCC-----CCHHHHHHH
T ss_pred             ------CCHHHHHHHHHHh----------------------CCccccCCcEEEEeC------CCCcCCCcCccHHHHHHH
Confidence                  1334455555443                      7665 5788888883      346999999999999999


Q ss_pred             HHHH
Q 005867          657 YQVE  660 (673)
Q Consensus       657 ~~~~  660 (673)
                      +.++
T Consensus       536 ~~~~  539 (541)
T d1lcia_         536 LIKA  539 (541)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8764

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=5.1e-65  Score=561.97  Aligned_cols=473  Identities=21%  Similarity=0.233  Sum_probs=390.9

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHH
Q 005867           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (673)
Q Consensus        40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~l  119 (673)
                      +..||.++|+++|+++||++|+++.    +     +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus        21 ~~~tl~~l~~~~a~~~Pd~~Al~~~----~-----~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~l   91 (514)
T d1amua_          21 RDKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGIL   91 (514)
T ss_dssp             TTCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHhCCCCeEEEEC----C-----eeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHH
Confidence            6689999999999999999999974    3     689999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceec
Q 005867          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (673)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  199 (673)
                      ||+++|++++|+++.++.+++.++++.++++++|++......+.......    .. ......                 
T Consensus        92 a~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~----~~-~~~~~~-----------------  149 (514)
T d1amua_          92 AVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNG----QV-EIFEED-----------------  149 (514)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCS----EE-EECCCS-----------------
T ss_pred             HHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcccc----cc-cccccc-----------------
Confidence            99999999999999999999999999999999999998777654432211    11 111110                 


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHhHH
Q 005867          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (673)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~  279 (673)
                          ............+..++++++|+|||||||.||+|.++|.++..........+     ....++++++.+|++|..
T Consensus       150 ----~~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~  220 (514)
T d1amua_         150 ----TIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDA  220 (514)
T ss_dssp             ----TTTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTH
T ss_pred             ----cccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccc-----cccccccccceecccccc
Confidence                01111222233456789999999999999999999999999999999988777     889999999999999999


Q ss_pred             HHHHhHHHhhcCcEEEEecC----CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 005867          280 DRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (673)
Q Consensus       280 gl~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (673)
                      ++...+.++..|+++++...    +...+...+..+.++.+..+|..+....                            
T Consensus       221 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------  272 (514)
T d1amua_         221 SVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLD----------------------------  272 (514)
T ss_dssp             HHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSC----------------------------
T ss_pred             ccccccccccccccccccccccccchhhhhhhhhhhhcccccceeeeccccc----------------------------
Confidence            99988889999999888764    6778888999999999999887654210                            


Q ss_pred             hhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCC--cc
Q 005867          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--MC  433 (673)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~--~~  433 (673)
                                             ...+++++.++++|+++++++.+++.+  +..+++.||+||++.+++......  ..
T Consensus       273 -----------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~  327 (514)
T d1amua_         273 -----------------------PERILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIG  327 (514)
T ss_dssp             -----------------------TTTCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCC
T ss_pred             -----------------------ccccccccEEEEecccCCHHHhhhhcc--ceeEEEeeccccCceeeeeccccccccC
Confidence                                   011258999999999999999888765  778999999999999877655443  22


Q ss_pred             ccCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhcc-------CCccccCceEEECCC
Q 005867          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPN  506 (673)
Q Consensus       434 ~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~~-------~g~~~TGDlg~~~~~  506 (673)
                      ...+.|.+.++..+.+.| +++.  +++.|+.|||+|+||.++.||++++..+...|.       +|||+|||+|++|+|
T Consensus       328 ~~~~~~~~~~~~~v~~~d-~~~~--~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~  404 (514)
T d1amua_         328 HSVPIGAPIQNTQIYIVD-ENLQ--LKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSD  404 (514)
T ss_dssp             SSCCCBEECTTEEEEEEC-TTSC--BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTT
T ss_pred             cccccccceeeeeEeeec-ccce--ecCCCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECCC
Confidence            336778889999999988 5555  444557999999999999999999999888872       679999999999999


Q ss_pred             CcEEEeecCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHH
Q 005867          507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLEL  583 (673)
Q Consensus       507 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~  583 (673)
                      |+|+++||.+|+|++ +|++|+|.+||++|.+||+|.||+|++.+++   +.++|+|+++++.                 
T Consensus       405 G~l~i~GR~~d~i~~-~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~~-----------------  466 (514)
T d1amua_         405 GNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI-----------------  466 (514)
T ss_dssp             SCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCC-----------------
T ss_pred             CcEEEEecccCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCCCC-----------------
Confidence            999999999999997 7999999999999999999999999997654   3789999888753                 


Q ss_pred             hccHHHHHHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 005867          584 CSLVQLQNYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  655 (673)
Q Consensus       584 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~  655 (673)
                       +.+++++++++.                      |++|++|..|++++      .+|+|++|||+|++|++
T Consensus       467 -~~~~l~~~~~~~----------------------l~~~~~p~~i~~v~------~lP~t~~GKi~R~~L~~  509 (514)
T d1amua_         467 -PLEQLRQFSSEE----------------------LPTYMIPSYFIQLD------KMPLTSNGKIDRKQLPE  509 (514)
T ss_dssp             -CHHHHHHHHHHH----------------------SCGGGSCSEEEECS------SCCBCTTSSBCGGGSCC
T ss_pred             -CHHHHHHHHHhh----------------------CCcccCceEEEEeC------CCCCCCCcChhHHhcCC
Confidence             334455554443                      99999999999883      34699999999999875

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=4.9e-64  Score=556.83  Aligned_cols=499  Identities=17%  Similarity=0.161  Sum_probs=402.1

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHHH
Q 005867           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (673)
Q Consensus        42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA~  121 (673)
                      .||.++|+++|+++||++|+++.   +      +++||+||.+++.++|++|++.|+++||+|+++++|++++++++|||
T Consensus        25 ~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~   95 (536)
T d1mdba_          25 ETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFAL   95 (536)
T ss_dssp             CCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEC---C------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHH
Confidence            69999999999999999999975   3      58999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcc----cccccccceEEEEeCCCcHHHHHHHhhCCCce
Q 005867          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP----DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (673)
Q Consensus       122 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  197 (673)
                      +++|++++|+++.++.+++.++|+.++++++++++.........    ...........+......            ..
T Consensus        96 ~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~  163 (536)
T d1mdba_          96 FRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------EF  163 (536)
T ss_dssp             HHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT------------TS
T ss_pred             HHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccc------------cc
Confidence            99999999999999999999999999999999987433211110    000111111111111110            11


Q ss_pred             ecHHHHHhcCccCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchHh
Q 005867          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (673)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~  277 (673)
                      ..+.++    ...+....+..++++++|+|||||||.||+|+++|+++...+......+     ++..++++++..|++|
T Consensus       164 ~~~~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~  234 (536)
T d1mdba_         164 LPLEDL----HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMAH  234 (536)
T ss_dssp             EEGGGC----CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTS
T ss_pred             cchhhc----ccCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccc-----cccccccccccccccc
Confidence            122211    1223344466889999999999999999999999999999999888877     8999999999999999


Q ss_pred             HHHHHH-h-HHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 005867          278 ILDRVI-E-EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (673)
Q Consensus       278 ~~gl~~-~-~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (673)
                      .+++.. . ...+..|.+++..+. ++..+...+++++++.+..+|..+..+........                    
T Consensus       235 ~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------  294 (536)
T d1mdba_         235 NYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR--------------------  294 (536)
T ss_dssp             HHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC--------------------
T ss_pred             ccceeeccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccc--------------------
Confidence            999864 3 334555677666665 99999999999999999999999887755322111                    


Q ss_pred             HhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCccc
Q 005867          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM  434 (673)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~  434 (673)
                                               ...++++.+++||+++++...+++.+.++......|+.+|.+.............
T Consensus       295 -------------------------~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (536)
T d1mdba_         295 -------------------------DDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEII  349 (536)
T ss_dssp             -------------------------CCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHH
T ss_pred             -------------------------cccCcceeEEEeccccccccccchhhccCceeeeccccccccccccccccccccc
Confidence                                     1125899999999999999999999999999999999999887766655555555


Q ss_pred             cCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEecCCccccccCCchhhhhhc-cCCccccCceEEECCCCcEEEee
Q 005867          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIID  513 (673)
Q Consensus       435 ~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~gp~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~~G  513 (673)
                      .+++|.|+++....++..+++  .+++.++.|||+++|+.++.||++++..+...+ .+|||+|||++++++||+|+++|
T Consensus       350 ~~~~g~p~~~~~~~~v~~~~g--~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~G  427 (536)
T d1mdba_         350 VNTQGKPMSPYDESRVWDDHD--RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEG  427 (536)
T ss_dssp             HHCCCEESSTTCEEEEECTTS--CBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEE
T ss_pred             cCCcccCCCCcceEEEEcCCC--CeecccccceeecCCCccccccccccccccccccccCccccCccccccCCCceecCC
Confidence            588999987666555552444  455667899999999999999999999888888 67999999999999999999999


Q ss_pred             cCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHH
Q 005867          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ  590 (673)
Q Consensus       514 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (673)
                      |.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+++++..                 ...+++
T Consensus       428 R~~d~i~~-~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~~~-----------------~~~~l~  489 (536)
T d1mdba_         428 RAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAP-----------------KAAELK  489 (536)
T ss_dssp             EGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCC-----------------CHHHHH
T ss_pred             CcceEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCCCC-----------------CHHHHH
Confidence            99999997 7999999999999999999999999986543   36899999876531                 333344


Q ss_pred             HHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHH
Q 005867          591 NYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID  662 (673)
Q Consensus       591 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~~~~~~  662 (673)
                      ++++        ++.             ||.|++|+.|++++.      +|+|++|||+|++|+++|+++|.
T Consensus       490 ~~l~--------~~~-------------l~~~~~P~~i~~v~~------lP~t~~GKi~r~~L~~~~~~~l~  534 (536)
T d1mdba_         490 AFLR--------ERG-------------LAAYKIPDRVEFVES------FPQTGVGKVSKKALREAISEKLL  534 (536)
T ss_dssp             HHHH--------HTT-------------CCGGGSCSEEEECSS------CCBCTTSCBCHHHHHHHHHHHHH
T ss_pred             HHHH--------hcC-------------CCcCcCccEEEEECC------CCcCCCcCccHHHHHHHHHHHHh
Confidence            4433        234             999999999998843      46999999999999999988764

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=1.2e-60  Score=524.38  Aligned_cols=492  Identities=21%  Similarity=0.214  Sum_probs=386.1

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeecccCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHhHHHHHHH
Q 005867           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (673)
Q Consensus        41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~v~~lA~~L~~~gv~~gd~V~i~~~~~~e~~~~~lA  120 (673)
                      ++||+++|+++|+++||++|+++.   ++.    +++||+||.+++.++|++|++.|+++||+|+++++|++++++++||
T Consensus         1 ~~ti~~~l~~~a~~~pd~~al~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA   73 (503)
T d3cw9a1           1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA   73 (503)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence            689999999999999999999986   433    6899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEeeCCCCCChhhHHHHHhccCceEEEEcchhhhhhhcccccccccceEEEEeCCCcHHHHHHHhhCCCceecH
Q 005867          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (673)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  200 (673)
                      |+++|++++|+++.++++++.++++.++++++|++........  ..... ....++                     .+
T Consensus        74 ~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~--~~~~~-~~~~~i---------------------~~  129 (503)
T d3cw9a1          74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADA--IFQSG-SGARII---------------------FL  129 (503)
T ss_dssp             HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHH--HHHTT-CCCEEE---------------------EH
T ss_pred             HHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHH--Hhhhc-cccccc---------------------cc
Confidence            9999999999999999999999999999999999875432211  11111 111222                     22


Q ss_pred             HHHHhcCc----cCCccCCCCCCCceEEEEeccCCCCCcceeeechHHHHHHHhhhhhhhccccCCCCCCcEEEEecchH
Q 005867          201 DEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (673)
Q Consensus       201 ~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~  276 (673)
                      .++.....    ..+.......++++++++|||||||.||+|.++|+++...+......+   .......++++..+|+.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~  206 (503)
T d3cw9a1         130 GDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV---GLRHGRHNVVLGLMPLY  206 (503)
T ss_dssp             HHHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTS---CCCSSTTCEEEECSCTT
T ss_pred             hhhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccc---cccccccccccccCccc
Confidence            22222211    122333455789999999999999999999999999999988766544   12456678999999998


Q ss_pred             hHHHHHH-hHHHhhcCcEEEEecC-CHHHHHHHhhhccCeEEEcchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 005867          277 HILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (673)
Q Consensus       277 ~~~gl~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (673)
                      |..+... .+.+...++.+++... ++..+...+..++++.+..+|..+..+.........                   
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  267 (503)
T d3cw9a1         207 HVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGS-------------------  267 (503)
T ss_dssp             SHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCT-------------------
T ss_pred             cccccccccccccccccccccccccChHHhhhhhhhceeeccccccccccccccccccccc-------------------
Confidence            8887765 4555667777777666 999999999999999999999998877553322111                   


Q ss_pred             HhhhcCCcCCcchhHHHHhHHHHHHHcCCceeEEEEcCCCCCHHHHHHHHHhcCCceeeecCCCCCCCcccccCCCCccc
Q 005867          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM  434 (673)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~  434 (673)
                                              ....++||.+++||++++++...++...++..+.+.||++|++..+..........
T Consensus       268 ------------------------~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~~~~  323 (503)
T d3cw9a1         268 ------------------------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTE  323 (503)
T ss_dssp             ------------------------TCCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSSSE
T ss_pred             ------------------------cccccceEEEEeccccccccccccccccccccccccccccccceeeeecccccccc
Confidence                                    11125899999999999999999999999999999999999998777665544322


Q ss_pred             cCCcCCCccceeEEEeecCCCCCCCCCCCCCceEEEec-CCccccccCCchhhhhhccCCccccCceEEECCCCcEEEee
Q 005867          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG-KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID  513 (673)
Q Consensus       435 ~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~GEl~v~g-p~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~G  513 (673)
                       ...+.+.+.....+.+   .....++.|+.|++.+.+ +....+|+++++.+.+.|.+|||+|||+|++++||.|+++|
T Consensus       324 -~~~~~~~~~~~~~~~~---~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~~~g~~~TgD~g~~~~dG~l~~~G  399 (503)
T d3cw9a1         324 -MAPGFFSEVRIVRIGG---GVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILG  399 (503)
T ss_dssp             -EBCCTTCCEEEECTTS---CTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEE
T ss_pred             -ccccccccceeeeeec---ccCcccCCCccccccccccccccccccCChhhhHHHhcCCceecccccccccCCeEEeCC
Confidence             3333333333333333   233345566789877765 55667889999999999999999999999999999999999


Q ss_pred             cCCCeEEcCCceeechHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChhHHHHHHHHcCCCCcHHHHhccHHHH
Q 005867          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ  590 (673)
Q Consensus       514 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (673)
                      |+||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+++.+..                .+..+  
T Consensus       400 R~~d~ik~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~----------------~~~~~--  460 (503)
T d3cw9a1         400 RVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGET----------------LSADA--  460 (503)
T ss_dssp             ESSCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC----------------CCHHH--
T ss_pred             CcCCeEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCCC----------------CCHHH--
Confidence            99999997 7999999999999999999999999996544   47999999876431                12223  


Q ss_pred             HHHHHHHHHHHHhcccccccccccccccCccceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 005867          591 NYILSELKNAAERNKVIFANWDTGCFSLLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  657 (673)
Q Consensus       591 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~Lp~~~~p~~i~~~~~p~~~~~~p~t~~GKv~R~~l~~~~  657 (673)
                            |+++++.++             ||+|++|+.|++++      .+|+|++|||+|++|++++
T Consensus       461 ------l~~~~~~~~-------------l~~~~~P~~i~~v~------~~P~t~~GKi~R~~L~~~~  502 (503)
T d3cw9a1         461 ------LDTFCRSSE-------------LADFKRPKRYFILD------QLPKNALNKVLRRQLVQQV  502 (503)
T ss_dssp             ------HHHHHHHSS-------------SCGGGSCSEEEECS------CCCBCTTSCBCHHHHHHHH
T ss_pred             ------HHHHHHhcC-------------CCCCCCccEEEEEC------CCCcCCCcCccHHHHHHhc
Confidence                  333333345             99999999998883      3469999999999999875