Citrus Sinensis ID: 005874

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670--
MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLYE
cccEEEEHHHHHHHHHHcccccccccccCCcccccccccccccccccccccccccccccHHHHHHHHHHHccccccEEEEEccccccCCcccccccccccccccEEEEHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHccccEEEEEcccccHHHHHHHHccccccEEEEccccHHHHHHHHcccccccEEEEEcccccccccHHcccccEEEEEHHHHHHHcccccccccccccccEEEEEEccccccccccEEEcHHHHHHHHHHHHHHccccccccEEEEEccHHHHHHHHHHHHHHHHccEEEEcccccccccccccccccccccccccccEEcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHcccccEECcccHHccccccccccccccccccccccccCEEEEEEccccccccccccccccEEEEccccccccccccHHHHHHHHccccccccccccccCEEEccccEEEEEEcccccEEcccccccccHHHHHHHHccccccEEEEECcccccEEEEEEEccHHHHHHHHHHcccHHHHccccccccCEEEEECccccccccccccccccccHHHHHHHHHHHHHHHcc
*SAYIVGVLVPLVFT***********************HALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLYE
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MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLYE

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Long chain acyl-CoA synthetase 9, chloroplastic Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.confidentQ9CAP8
Long-chain-fatty-acid--CoA ligase 4 Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses arachidonate and eicosapentaenoate as substrates.probableO60488
Fatty acyl-CoA synthetase B Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process.probableQ1ZXQ4

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
6.-.-.-Ligases.probable
6.2.-.-Forming carbon-sulfur bonds.probable
6.2.1.-Acid--thiol ligases.probable
6.2.1.3Long-chain-fatty-acid--CoA ligase.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3TSY, chain A
Confidence level:very confident
Coverage over the Query: 53-81,92-94,106-331,343-368,416-580
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Template: 1RY2, chain A
Confidence level:very confident
Coverage over the Query: 57-81,93-369,415-664
View the alignment between query and template
View the model in PyMOL
Template: 1MD9, chain A
Confidence level:probable
Coverage over the Query: 118-209,226-370,381-402,413-426,449-667
View the alignment between query and template
View the model in PyMOL
Template: 3A9U, chain A
Confidence level:probable
Coverage over the Query: 108-413,465-624
View the alignment between query and template
View the model in PyMOL
Template: 1PG3, chain A
Confidence level:probable
Coverage over the Query: 37-77,89-295
View the alignment between query and template
View the model in PyMOL