Citrus Sinensis ID: 005874

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670--
Protein Sequence
MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLYE
Secondary Structure (PSIPRED)
cccEEEEHHHHHHHHHHcccccccccccEEcccccccccccccccccccccccccccccHHHHHHHHHHHccccccEEEEEccccccEEcccccccccccccccEEEEHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHcccccEEEEccccHHHHHHHHcccccccEEEEEccccccccHHHHccccEEEEEHHHHHHHcccccccccccccccEEEEEEccccccccccEEEcHHHHHHHHHHHHHHccccccccEEEEEccHHHHHHHHHHHHHHHHccEEEEcccccccccccccccccccccccccccEEcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHccccEEEccHHHHcccccccccccccccccccccccEEEEEEEccccccccccccccccEEEEccccccccccccHHHHHHHHccccccccccccccEEEEccccEEEEEEcccccEEcccccccccHHHHHHHHccccccEEEEEEcccccEEEEEEEccHHHHHHHHHHcccHHHHccccccccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEEEHHHHHHHHccccHHccccccccccccccccccEEccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEccccEEccHHHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHcccEEEEHHHcccHHHHHHHHccccEEEEEEcHHHHHHHHHHHHcccccEEEEEEccccccccccccccccEEEEEHHHHHHHcccccccccccccccEEEEEEEccccccccEEEEEcHHHHHHHHHHHHHccccccccEEEEHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccHHHHccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHccccEEEccccccccccEEEEcccccccccccccccccEEEEEEccccccccccccccccEEEEccccEcEcccccHHHHHHHHcccccccEEEEccccccEccccEEEEEEccccHHEHccccEccHHHHHHHHHccccccEEEEEccccccEEEEEEEccHHHHHHHHHHHccHHHHcccccccEcEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MSAYIVGVLVPLVFTLLLRNskkekkrgipvdvggepghalrncrftslvsTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETevadngrsfeklHLGEYEWLTYGQAFETICNFASGlaqlghkkeERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALcyslnetevTTVICGSKELKKLVDLSGQLDTVKHVIcmdanipsavssveqsgrwkitsfadvqilgrenpvdadypvsADVAVIMYtsgstglpkgvmmtHGNVLATVSAVMTIvpdlgskdvYLAYLPLAHVLELVAENLIAGVgsaigygtpltltdtsskikkgtqgdasvlrptvmaSVPAILDRVRDGVRkkvdakgglskkLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRfilsggaplsadTQRFINIClgapigqgygltetcaggtfsevddssvgrvgaplpcsfiklidwpeggyltsdspmprgeiviagpnvtvgyfkneektkevykvddkgmrwfytgdvgqvhadgCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVspyvdnimmhadpfHSYCVALVVASQPAVEEWAAKqgivgknarldkfeipakikllsypwtseaGLVTAALKIKREAIRKAFADDLARLYE
Flexible Loop (DISEMBL)
msayivgvLVPLVFTLLLrnskkekkrgipvdvggepghalrnCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISretevadngrsfEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKkgtqgdasvlrptvmasvpaildrvrdgvrkkvdakgglskklfDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNvtvgyfkneektkevykvddKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQgivgknarldkFEIPAKikllsypwtseaGLVTAALKIKREAIRKAFADDLARLYE
Low Complexity Region (SEG)
MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLYE
Disordered region (IsUnstruct)
**************************************HALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTD**************VLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDL*****
Disordered Region (DISOPRED)
*SAYIVGVLVPLVFT****************************CRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQIL**********PVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLYE
Disordered Region (DISEMBL)
MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLYE
Disordered Region (DISPRO)
MSAYIVGVLVPLVFTLLLRN*****************GHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLYE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLYE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	672	2.2.26 [Sep-21-2011]
Q9CAP8	691	Long chain acyl-CoA synth	yes	no	0.991	0.963	0.745	0.0
Q9SJD4	720	Long chain acyl-CoA synth	no	no	0.968	0.904	0.627	0.0
O60488	711	Long-chain-fatty-acid--Co	yes	no	0.973	0.919	0.461	1e-172
Q5R668	720	Long-chain-fatty-acid--Co	no	no	0.980	0.915	0.458	1e-171
O95573	720	Long-chain-fatty-acid--Co	no	no	0.980	0.915	0.457	1e-171
Q63151	720	Long-chain-fatty-acid--Co	yes	no	0.979	0.913	0.459	1e-169
Q9QUJ7	711	Long-chain-fatty-acid--Co	yes	no	0.980	0.926	0.458	1e-169
O35547	670	Long-chain-fatty-acid--Co	no	no	0.933	0.935	0.466	1e-168
Q9CZW4	720	Long-chain-fatty-acid--Co	no	no	0.979	0.913	0.456	1e-168
O60135	676	Long-chain-fatty-acid--Co	yes	no	0.907	0.902	0.334	4e-99

>sp|Q9CAP8|LACS9_ARATH Long chain acyl-CoA synthetase 9, chloroplastic OS=Arabidopsis thaliana GN=LACS9 PE=2 SV=1

 Score = 1095 bits (2831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/695 (74%), Positives = 596/695 (85%), Gaps = 29/695 (4%)

Query: 1   MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTL 60
           M  Y  GV+VPL  T L++ SKKEKKRG+ VDVGGEPG+A+RN RFT  VS+ WE ISTL
Sbjct: 1   MIPYAAGVIVPLALTFLVQKSKKEKKRGVVVDVGGEPGYAIRNHRFTEPVSSHWEHISTL 60

Query: 61  AELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFA 120
            ELFE SC  H D+  LGTR+LISRE E +++G++FEKLHLG+YEWLT+G+  E +C+FA
Sbjct: 61  PELFEISCNAHSDRVFLGTRKLISREIETSEDGKTFEKLHLGDYEWLTFGKTLEAVCDFA 120

Query: 121 SGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVT 180
           SGL Q+GHK EERVAIFADTR EWF++LQGCFRRNVTVVTIY+SLGEEALC+SLNETEVT
Sbjct: 121 SGLVQIGHKTEERVAIFADTREEWFISLQGCFRRNVTVVTIYSSLGEEALCHSLNETEVT 180

Query: 181 TVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGREN 240
           TVICGSKELKKL+D+S QL+TVK VICMD   PS V+S      W  TSF DVQ LGREN
Sbjct: 181 TVICGSKELKKLMDISQQLETVKRVICMDDEFPSDVNS-----NWMATSFTDVQKLGREN 235

Query: 241 PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLP 300
           PVD ++P+SADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG +D+Y+AYLP
Sbjct: 236 PVDPNFPLSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGKRDIYMAYLP 295

Query: 301 LAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR 360
           LAH+LEL AE+++A +GSAIGYG+PLTLTDTS+KIKKGT+GD + L+PT+M +VPAILDR
Sbjct: 296 LAHILELAAESVMATIGSAIGYGSPLTLTDTSNKIKKGTKGDVTALKPTIMTAVPAILDR 355

Query: 361 VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGG 420
           VRDGVRKKVDAKGGLSKKLFD AYARRLSAINGSWFGAWGLEKLLW++LVF K+RA+LGG
Sbjct: 356 VRDGVRKKVDAKGGLSKKLFDFAYARRLSAINGSWFGAWGLEKLLWDVLVFRKIRAVLGG 415

Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPC 480
           +IR++LSGGAPLS DTQRFINIC+GAPIGQGYGLTETCAGGTFSE +D+SVGRVGAPLPC
Sbjct: 416 QIRYLLSGGAPLSGDTQRFINICVGAPIGQGYGLTETCAGGTFSEFEDTSVGRVGAPLPC 475

Query: 481 SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTG 540
           SF+KL+DW EGGYLTSD PMPRGEIVI G N+T+GYFKNEEKTKEVYKVD+KGMRWFYTG
Sbjct: 476 SFVKLVDWAEGGYLTSDKPMPRGEIVIGGSNITLGYFKNEEKTKEVYKVDEKGMRWFYTG 535

Query: 541 DVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVA 600
           D+G+ H DGCLEIIDRKKDIVKLQHGEYVSLGKVEAAL +SPYV+NIM+HAD F+SYCVA
Sbjct: 536 DIGRFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSISPYVENIMVHADSFYSYCVA 595

Query: 601 LVVASQPAVEEWAAKQGI------------------------VGKNARLDKFEIPAKIKL 636
           LVVASQ  VE WA+KQGI                          K +RL+KFEIPAKIKL
Sbjct: 596 LVVASQHTVEGWASKQGIDFANFEELCTKEQAVKEVYASLVKAAKQSRLEKFEIPAKIKL 655

Query: 637 LSYPWTSEAGLVTAALKIKREAIRKAFADDLARLY 671
           L+ PWT E+GLVTAALK+KR+ IR+ F++DL +LY
Sbjct: 656 LASPWTPESGLVTAALKLKRDVIRREFSEDLTKLY 690

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3

>sp|Q9SJD4|LACS8_ARATH Long chain acyl-CoA synthetase 8 OS=Arabidopsis thaliana GN=LACS8 PE=2 SV=1

 Score =  892 bits (2306), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/676 (62%), Positives = 524/676 (77%), Gaps = 25/676 (3%)

Query: 21  SKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTR 80
           +KK KKRG+P+ VGGE G+ +R+ R   LV   WEG +T+  LFEQSCK++    LLGTR
Sbjct: 44  TKKGKKRGVPIKVGGEEGYTMRHARAPELVDVPWEGAATMPALFEQSCKKYSKDRLLGTR 103

Query: 81  QLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADT 140
           + I +E   A +GR FEKLHLGEY+W +YG+ FE +CNFASGL  +GH  ++RVAIF+DT
Sbjct: 104 EFIDKEFITASDGRKFEKLHLGEYKWQSYGEVFERVCNFASGLVNVGHNVDDRVAIFSDT 163

Query: 141 RAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLD 200
           RAEWF+A QGCFR+++TVVTIYASLGEEAL YSLNET V+T+IC SK+LKKL  +   L 
Sbjct: 164 RAEWFIAFQGCFRQSITVVTIYASLGEEALIYSLNETRVSTLICDSKQLKKLSAIQSSLK 223

Query: 201 TVKHVICMDAN-IPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTS 259
           TVK++I ++ + +  A S V   G   ++S ++V+ LG++N V    P    VAVIM+TS
Sbjct: 224 TVKNIIYIEEDGVDVASSDVNSMGDITVSSISEVEKLGQKNAVQPILPSKNGVAVIMFTS 283

Query: 260 GSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSA 319
           GSTGLPKGVM+THGN++AT + VM +VP L   D Y+AYLPLAHV EL AE ++   GSA
Sbjct: 284 GSTGLPKGVMITHGNLVATAAGVMKVVPKLDKNDTYIAYLPLAHVFELEAEIVVFTSGSA 343

Query: 320 IGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKL 379
           IGYG+ +TLTDTS+K+KKGT+GD S L+PT+M +VPAILDRVR+GV KKV+ KGG++K L
Sbjct: 344 IGYGSAMTLTDTSNKVKKGTKGDVSALKPTIMTAVPAILDRVREGVLKKVEEKGGMAKTL 403

Query: 380 FDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRF 439
           FD AY RRL+A++GSWFGAWGLEK+LW+ LVF K+RA+LGG IRF+L GGAPLS D+QRF
Sbjct: 404 FDFAYKRRLAAVDGSWFGAWGLEKMLWDALVFKKIRAVLGGHIRFMLVGGAPLSPDSQRF 463

Query: 440 INICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSP 499
           INIC+G+PIGQGYGLTETCAG TFSE DD +VGRVG PLPC ++KL+ W EGGY  SD P
Sbjct: 464 INICMGSPIGQGYGLTETCAGATFSEWDDPAVGRVGPPLPCGYVKLVSWEEGGYRISDKP 523

Query: 500 MPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKD 559
           MPRGEIV+ G +VT GYF N+EKT EVYKVD+KG RWFYTGD+G+ H DGCLE+IDRKKD
Sbjct: 524 MPRGEIVVGGNSVTAGYFNNQEKTDEVYKVDEKGTRWFYTGDIGRFHPDGCLEVIDRKKD 583

Query: 560 IVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQGI- 618
           IVKLQHGEYVSLGKVEAAL  S YVDNIM+HADP +SYCVALVV S+ A+E+WA + G+ 
Sbjct: 584 IVKLQHGEYVSLGKVEAALGSSNYVDNIMVHADPINSYCVALVVPSRGALEKWAEEAGVK 643

Query: 619 -----------------------VGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIK 655
                                   GK A+L+KFE+PAKIKLLS PWT E+GLVTAALKIK
Sbjct: 644 HSEFAELCEKGEAVKEVQQSLTKAGKAAKLEKFELPAKIKLLSEPWTPESGLVTAALKIK 703

Query: 656 REAIRKAFADDLARLY 671
           RE I+  F D+L++LY
Sbjct: 704 REQIKSKFKDELSKLY 719

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O60488|ACSL4_HUMAN Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapiens GN=ACSL4 PE=1 SV=2

 Score =  605 bits (1559), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 326/707 (46%), Positives = 434/707 (61%), Gaps = 53/707 (7%)

Query: 1   MSAYIVGVLVPLVFTLLLRNSKKEK---KRGIPVDVGGEPGHALRN-CRFTSLVSTSWEG 56
           ++ Y   + +P  F   L N+KK+    KR        +PG   R+   F SL      G
Sbjct: 19  ITIYSALIFIPWYF---LTNAKKKNAMAKRIKAKPTSDKPGSPYRSVTHFDSLAVIDIPG 75

Query: 57  ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETI 116
             TL +LF+ +  + G K  LGTR+++S E E+  NG+ F+KL LG Y+W+ Y +    +
Sbjct: 76  ADTLDKLFDHAVSKFGKKDSLGTREILSEENEMQPNGKVFKKLILGNYKWMNYLEVNRRV 135

Query: 117 CNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNE 176
            NF SGL  LG K +  +AIF +TRAEW +A Q CF+ N  +VT+YA+LG+EA+ + LNE
Sbjct: 136 NNFGSGLTALGLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGKEAVVHGLNE 195

Query: 177 TEVTTVICG-----SKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFA 231
           +E + +I       SK    L+D+S     VKH+I +D     A++  E    ++I S  
Sbjct: 196 SEASYLITSVELLESKLKTALLDIS----CVKHIIYVDN---KAINKAEYPEGFEIHSMQ 248

Query: 232 DVQILGRENP----VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP 287
            V+ LG  NP    +    P  +D+A++MYTSGSTG PKGVMM H N++A ++     +P
Sbjct: 249 SVEELG-SNPENLGIPPSRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQCERIP 307

Query: 288 DLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLR 347
            LG KD Y+ YLPLAHVLEL AE      G  IGY +PLTL+D SSKIKKG++GD +VL+
Sbjct: 308 GLGPKDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDCTVLK 367

Query: 348 PTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWN 407
           PT+MA+VP I+DR+   V  KV     + K LF + Y  +L  I        G +  L N
Sbjct: 368 PTLMAAVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLEQIKK------GYDAPLCN 421

Query: 408 LLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVD 467
           LL+F KV+A+LGG +R +LSGGAPLS  T RF+N+C   PIGQGYGLTE+C  GT +EV 
Sbjct: 422 LLLFKKVKALLGGNVRMMLSGGAPLSPQTHRFMNVCFCCPIGQGYGLTESCGAGTVTEVT 481

Query: 468 DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVY 527
           D + GRVGAPL C  IKL DW EGGY  +D P PRGEIVI G N+++GYFKNEEKT E Y
Sbjct: 482 DYTTGRVGAPLICCEIKLKDWQEGGYTINDKPNPRGEIVIGGQNISMGYFKNEEKTAEDY 541

Query: 528 KVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNI 587
            VD+ G RWF TGD+G+ H DGCL+IIDRKKD+VKLQ GEYVSLGKVEAAL   P +DNI
Sbjct: 542 SVDENGQRWFCTGDIGEFHPDGCLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPLIDNI 601

Query: 588 MMHADPFHSYCVALVVASQPAVEEWAAKQGIVGK----------------------NA-R 624
              A    SY ++ VV +Q  +   A ++G+ G                       NA +
Sbjct: 602 CAFAKSDQSYVISFVVPNQKRLTLLAQQKGVEGTWVDICNNPAMEAEILKEIREAANAMK 661

Query: 625 LDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLY 671
           L++FEIP K++L   PWT E GLVT A K+KR+ +R  +  D+ R+Y
Sbjct: 662 LERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELRNHYLKDIERMY 708

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses arachidonate and eicosapentaenoate as substrates.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q5R668|ACSL3_PONAB Long-chain-fatty-acid--CoA ligase 3 OS=Pongo abelii GN=ACSL3 PE=2 SV=2

 Score =  601 bits (1550), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 321/700 (45%), Positives = 433/700 (61%), Gaps = 41/700 (5%)

Query: 1   MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCR-FTSLVSTSWEGIST 59
           +S Y +   +P  F    R  K  + +  PV+   +P  A R+      L S  + G  T
Sbjct: 30  ISLYTILTYIPFYFFSESRQEKSNRIKAKPVN--SKPDSAYRSVNSLDGLASVLYPGCDT 87

Query: 60  LAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNF 119
           L ++F  +  +  +K LLGTR++++ E EV  NG+ F+K+ LG+Y WL+Y   F    NF
Sbjct: 88  LDKVFTYAKNKFKNKRLLGTREVLNEEDEVQPNGKIFKKVILGQYNWLSYEDVFVRAFNF 147

Query: 120 ASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179
            +GL  LG K +  +AIF +TRAEW +A Q CF  N  +VT+YA+LG  A+ ++LNETEV
Sbjct: 148 GNGLQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHALNETEV 207

Query: 180 TTVICGSKEL--KKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILG 237
           T +I  SKEL   KL D+   +  ++H+I +D   P+     E      + + A V+ LG
Sbjct: 208 TNIIT-SKELLQTKLKDIVSLVPRLRHIITVDGKPPTWS---EFPKGIIVHTMAAVEALG 263

Query: 238 RENPVDAD---YPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV 294
            +  ++      P+ +D+AVIMYTSGSTGLPKGVM++H N++A ++ +   +P+LG +DV
Sbjct: 264 AKASMENQPHSKPLPSDIAVIMYTSGSTGLPKGVMISHSNIIAGITGMAERIPELGEEDV 323

Query: 295 YLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASV 354
           Y+ YLPLAHVLEL AE +    G  IGY +P TL D SSKIKKG++GD S+L+PT+MA+V
Sbjct: 324 YIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSMLKPTLMAAV 383

Query: 355 PAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKV 414
           P I+DR+   V  KV       + LF LAY  ++  I+       G    L N  VF KV
Sbjct: 384 PEIMDRIYKNVMNKVSEMSSFQRNLFILAYNYKMEQISK------GRNTPLCNSFVFRKV 437

Query: 415 RAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRV 474
           R++LGG IR +L GGAPLSA TQRF+NIC   P+GQGYGLTE+   GT SEV D + GRV
Sbjct: 438 RSLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESAGAGTISEVWDYNTGRV 497

Query: 475 GAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGM 534
           GAPL C  IKL +W EGGY  +D P PRGEI+I G  VT+GY+KNE KTK  +  D+ G 
Sbjct: 498 GAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQIVTMGYYKNEAKTKADFFEDENGQ 557

Query: 535 RWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPF 594
           RW  TGD+G+   DGCL+IIDRKKD+VKLQ GEYVSLGKVEAAL   P VDNI  +A+ +
Sbjct: 558 RWLCTGDIGEFEPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLPLVDNICAYANSY 617

Query: 595 HSYCVALVVASQPAVEEWAAKQGIVGK-----------------------NARLDKFEIP 631
           HSY +  VV +Q  + E A K+G+ G                        +A L+KFEIP
Sbjct: 618 HSYVIGFVVPNQKELTELARKKGLKGTWEELCNSCEMENEVLKVLSEAAISASLEKFEIP 677

Query: 632 AKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLY 671
            KI+L   PWT E GLVT A K+KR+ ++  +  D+ R+Y
Sbjct: 678 VKIRLSPEPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717

Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 has mainly an anabolic role in energy metabolism (By similarity). Required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins) (By similarity). Mediates hepatic lipogenesis (By similarity). Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O95573|ACSL3_HUMAN Long-chain-fatty-acid--CoA ligase 3 OS=Homo sapiens GN=ACSL3 PE=1 SV=3

 Score =  601 bits (1549), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 320/700 (45%), Positives = 434/700 (62%), Gaps = 41/700 (5%)

Query: 1   MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCR-FTSLVSTSWEGIST 59
           +S Y +   +P  F    R  K  + +  PV+   +P  A R+      L S  + G  T
Sbjct: 30  ISLYTILTYIPFYFFSESRQEKSNRIKAKPVN--SKPDSAYRSVNSLDGLASVLYPGCDT 87

Query: 60  LAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNF 119
           L ++F  +  +  +K LLGTR++++ E EV  NG+ F+K+ LG+Y WL+Y   F    NF
Sbjct: 88  LDKVFTYAKNKFKNKRLLGTREVLNEEDEVQPNGKIFKKVILGQYNWLSYEDVFVRAFNF 147

Query: 120 ASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179
            +GL  LG K +  +AIF +TRAEW +A Q CF  N  +VT+YA+LG  A+ ++LNETEV
Sbjct: 148 GNGLQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHALNETEV 207

Query: 180 TTVICGSKEL--KKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILG 237
           T +I  SKEL   KL D+   +  ++H+I +D   P+     E      + + A V+ LG
Sbjct: 208 TNIIT-SKELLQTKLKDIVSLVPRLRHIITVDGKPPTWS---EFPKGIIVHTMAAVEALG 263

Query: 238 RENPVDAD---YPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV 294
            +  ++      P+ +D+AVIMYTSGSTGLPKGVM++H N++A ++ +   +P+LG +DV
Sbjct: 264 AKASMENQPHSKPLPSDIAVIMYTSGSTGLPKGVMISHSNIIAGITGMAERIPELGEEDV 323

Query: 295 YLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASV 354
           Y+ YLPLAHVLEL AE +    G  IGY +P TL D SSKIKKG++GD S+L+PT+MA+V
Sbjct: 324 YIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSMLKPTLMAAV 383

Query: 355 PAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKV 414
           P I+DR+   V  KV       + LF LAY  ++  I+       G    L +  VF KV
Sbjct: 384 PEIMDRIYKNVMNKVSEMSSFQRNLFILAYNYKMEQISK------GRNTPLCDSFVFRKV 437

Query: 415 RAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRV 474
           R++LGG IR +L GGAPLSA TQRF+NIC   P+GQGYGLTE+   GT SEV D + GRV
Sbjct: 438 RSLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESAGAGTISEVWDYNTGRV 497

Query: 475 GAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGM 534
           GAPL C  IKL +W EGGY  +D P PRGEI+I G +VT+GY+KNE KTK  +  D+ G 
Sbjct: 498 GAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQSVTMGYYKNEAKTKADFFEDENGQ 557

Query: 535 RWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPF 594
           RW  TGD+G+   DGCL+IIDRKKD+VKLQ GEYVSLGKVEAAL   P VDNI  +A+ +
Sbjct: 558 RWLCTGDIGEFEPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLPLVDNICAYANSY 617

Query: 595 HSYCVALVVASQPAVEEWAAKQGIVGK-----------------------NARLDKFEIP 631
           HSY +  VV +Q  + E A K+G+ G                        +A L+KFEIP
Sbjct: 618 HSYVIGFVVPNQKELTELARKKGLKGTWEELCNSCEMENEVLKVLSEAAISASLEKFEIP 677

Query: 632 AKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLY 671
            KI+L   PWT E GLVT A K+KR+ ++  +  D+ R+Y
Sbjct: 678 VKIRLSPEPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717

Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 mediates hepatic lipogenesis (By similarity). Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates (By similarity). Has mainly an anabolic role in energy metabolism. Required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins).

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q63151|ACSL3_RAT Long-chain-fatty-acid--CoA ligase 3 OS=Rattus norvegicus GN=Acsl3 PE=1 SV=1

 Score =  596 bits (1536), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 322/701 (45%), Positives = 430/701 (61%), Gaps = 43/701 (6%)

Query: 1   MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVD-VGGEPGHALRNCR-FTSLVSTSWEGIS 58
           +S Y +   +P  F   L  SK+EK   I    V  +P  A R+      L S  + G  
Sbjct: 30  ISLYTILTYIPFYF---LCESKQEKPNHIKAKPVSSKPDSAYRSVNSMDGLASVLYPGCD 86

Query: 59  TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
           TL ++F  +  +  DK LLGTR++++ E E+  NG+ F+K+ LG Y WL+Y   F    +
Sbjct: 87  TLDKVFMYAKNKFKDKRLLGTREILNEEDEIQPNGKVFKKVILGHYNWLSYEDVFIRALD 146

Query: 119 FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETE 178
           F +GL  LG K +  +AIF +TRAEW +A Q CF  N  +VT+YA+LG  A+ + LNETE
Sbjct: 147 FGNGLQMLGQKPKANIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHGLNETE 206

Query: 179 VTTVICGSKEL--KKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQIL 236
           VT +I  SKEL   KL D+   +  ++H+I +D   P+     E      + + A VQ L
Sbjct: 207 VTNIIT-SKELLQTKLKDIVSLVPRLRHIITVDGKPPTWS---EFPKGVIVHTMAAVQAL 262

Query: 237 GRENPVDA---DYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKD 293
           G +  VD      P+ +D+AVIMYTSGSTG+PKGVM++H N++A+++ +   +P LG +D
Sbjct: 263 GVKADVDKKAHSKPLPSDIAVIMYTSGSTGIPKGVMISHSNIIASITGMARRIPRLGEED 322

Query: 294 VYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMAS 353
           VY+ YLPLAHVLEL AE +    G  IGY +P TL D SSKIKKG++GD SVL+PT+MA+
Sbjct: 323 VYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSVLKPTLMAA 382

Query: 354 VPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSK 413
           VP I+DR+   V  KV+      + LF LAY  ++  I+       G    L +  VF  
Sbjct: 383 VPEIMDRIYKNVMNKVNEMSAFQRNLFILAYNYKMEQISK------GCSTPLCDRFVFRN 436

Query: 414 VRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGR 473
           VR +LGG IR +L GGAPLSA TQRF+NIC   P+GQGYGLTE+   GT +EV D + GR
Sbjct: 437 VRRLLGGNIRVLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESTGAGTITEVWDYNTGR 496

Query: 474 VGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKG 533
           VGAPL C  IKL +W EGGY  +D P PRGEI+I G NVT+GY+KNE KTK  +  D+ G
Sbjct: 497 VGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAKTKADFFEDENG 556

Query: 534 MRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADP 593
            RW  TGD+G+   DGCL+IIDRKKD+VKLQ GEYVSLGKVEAAL   P +DNI  +A+ 
Sbjct: 557 QRWLCTGDIGEFDPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLPLIDNICAYANS 616

Query: 594 FHSYCVALVVASQPAVEEWAAKQGIVGK-----------------------NARLDKFEI 630
           +HSY +  VV +Q  + E A  +G  G                        +A L+KFEI
Sbjct: 617 YHSYVIGFVVPNQKELTELARTKGFNGTWEELCNSSEMENEVLKVLSEAAISASLEKFEI 676

Query: 631 PAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLY 671
           P KI+L   PWT E GLVT A K+KR+ ++  +  D+ R+Y
Sbjct: 677 PLKIRLSPDPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717

Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 is required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins) (By similarity). Has mainly an anabolic role in energy metabolism. Mediates hepatic lipogenesis. Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates. Both isoforms exhibit the same level of activity.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9QUJ7|ACSL4_MOUSE Long-chain-fatty-acid--CoA ligase 4 OS=Mus musculus GN=Acsl4 PE=2 SV=2

 Score =  595 bits (1535), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 322/702 (45%), Positives = 430/702 (61%), Gaps = 43/702 (6%)

Query: 1   MSAYIVGVLVPLVFTLLLRNSKKEK---KRGIPVDVGGEPGHALRNC-RFTSLVSTSWEG 56
           ++ Y   + +P  F   L N+KK+    KR        +PG   R+   F SL      G
Sbjct: 19  ITIYSALIFIPWYF---LTNAKKKNAMAKRIKAKPTSDKPGSPYRSVTHFDSLAVIDIPG 75

Query: 57  ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETI 116
             TL +LF+ +  + G K  LGTR+++S E E+  NG+ F+KL LG Y+W+ Y +    +
Sbjct: 76  ADTLDKLFDHAVAKFGKKDSLGTREILSEENEMQPNGKVFKKLILGNYKWINYLEVNCRV 135

Query: 117 CNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNE 176
            NF SGL  LG K +  +AIF +TRAEW +A Q CF+ N  +VT+YA+LG EA+ + LNE
Sbjct: 136 NNFGSGLTALGLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGREAVVHGLNE 195

Query: 177 TEVTTVICGSKELK-KLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQI 235
           +E + +I   + L+ KL      ++ VKH+I +D      ++  E     +I S   V+ 
Sbjct: 196 SEASYLITSVELLESKLKAALVDINCVKHIIYVDN---KTINRAEYPEGLEIHSMQSVEE 252

Query: 236 LGR--EN-PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSK 292
           LG   EN  V    P  +D+A++MYTSGSTG PKGVMM H N++A ++     +P LG K
Sbjct: 253 LGAKPENLSVPPSRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQCERIPGLGPK 312

Query: 293 DVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMA 352
           D Y+ YLPLAHVLEL AE      G  IGY +PLTL+D SSKIKKG++GD +VL+PT+MA
Sbjct: 313 DTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDCTVLKPTLMA 372

Query: 353 SVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFS 412
           +VP I+DR+   V  KV     + K LF + Y  +L  I        G +  L NL++F 
Sbjct: 373 AVPEIMDRIYKNVMSKVQEMNYVQKTLFKIGYDYKLEQIKK------GYDAPLCNLILFK 426

Query: 413 KVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVG 472
           KV+A+LGG +R +LSGGAPLS  T RF+N+C   PIGQGYGLTE+C  GT +EV D + G
Sbjct: 427 KVKALLGGNVRMMLSGGAPLSPQTHRFMNVCFCCPIGQGYGLTESCGAGTVTEVTDYTTG 486

Query: 473 RVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDK 532
           RVGAPL C  IKL DW EGGY   D P PRGEIVI G N+++GYFKNEEKT E Y VD+ 
Sbjct: 487 RVGAPLICCEIKLKDWQEGGYTVHDKPNPRGEIVIGGQNISMGYFKNEEKTAEDYCVDEN 546

Query: 533 GMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHAD 592
           G RWF TGD+G+ H DGCL+IIDRKKD+VKLQ GEYVSLGKVEAAL   P +DNI   A 
Sbjct: 547 GQRWFCTGDIGEFHPDGCLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPLIDNICAFAK 606

Query: 593 PFHSYCVALVVASQPAVEEWAAKQGIVGK----------------------NA-RLDKFE 629
              SY ++ VV +Q  +   A ++G+ G                       NA +L++FE
Sbjct: 607 SDQSYVISFVVPNQKKLTLLAQQKGVEGSWVDICNNPAMEAEILKEIREAANAMKLERFE 666

Query: 630 IPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLY 671
           IP K++L   PWT E GLVT A K+KR+ ++  +  D+ R+Y
Sbjct: 667 IPIKVRLSPEPWTPETGLVTDAFKLKRKELKNHYLKDIERMY 708

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses arachidonate and eicosapentaenoate as substrates.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O35547|ACSL4_RAT Long-chain-fatty-acid--CoA ligase 4 OS=Rattus norvegicus GN=Acsl4 PE=2 SV=1

 Score =  593 bits (1529), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 310/664 (46%), Positives = 415/664 (62%), Gaps = 37/664 (5%)

Query: 36  EPGHALRN-CRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGR 94
           +PG   R+   F SL      G  TL +LF+ +  + G K  LGTR+++S E E+  NG+
Sbjct: 13  KPGSPYRSVTHFDSLAVIDIPGADTLDKLFDHAVAKFGKKDSLGTREILSEENEMQPNGK 72

Query: 95  SFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRR 154
            F+KL LG Y+W+ Y +    + NF SGL  LG K +  +AIF +TRAEW +A Q CF+ 
Sbjct: 73  VFKKLILGNYKWINYLEVNCRVNNFGSGLTALGLKPKNTIAIFCETRAEWMIAAQTCFKY 132

Query: 155 NVTVVTIYASLGEEALCYSLNETEVTTVICGSKELK-KLVDLSGQLDTVKHVICMDANIP 213
           N  +VT+YA+LG+EA+ + LNE+E + +I   + L+ KL      ++ VKH+I +D    
Sbjct: 133 NFPLVTLYATLGKEAVVHGLNESEASYLITSVELLESKLKAALLDINCVKHIIYVDN--- 189

Query: 214 SAVSSVEQSGRWKITSFADVQILG---RENPVDADYPVSADVAVIMYTSGSTGLPKGVMM 270
             ++  E     +I S   V+ LG     + +    P  +D+A++MYTSGSTG PKGVMM
Sbjct: 190 KTINRAEYPEGLEIHSMQSVEELGSKPENSSIPPSRPTPSDMAIVMYTSGSTGRPKGVMM 249

Query: 271 THGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTD 330
            H N++A ++     +P LG KD Y+ YLPLAHVLEL AE      G  IGY +PLTL+D
Sbjct: 250 HHSNLIAGMTGQCERIPGLGPKDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSD 309

Query: 331 TSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSA 390
            SSKIKKG++GD +VL+PT+MA+VP I+DR+   V  KV     + K LF + Y  +L  
Sbjct: 310 QSSKIKKGSKGDCTVLKPTLMAAVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLEQ 369

Query: 391 INGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQ 450
           I        G +  L NL++F KV+A+LGG +R +LSGGAPLS  T RF+N+C   PIGQ
Sbjct: 370 IKK------GYDAPLCNLILFKKVKALLGGNVRMMLSGGAPLSPQTHRFMNVCFCCPIGQ 423

Query: 451 GYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP 510
           GYGLTE+C  GT +EV D + GRVGAPL C  IKL DW EGGY   D P PRGEIVI G 
Sbjct: 424 GYGLTESCGAGTVTEVTDYTTGRVGAPLICCEIKLKDWQEGGYTVHDKPNPRGEIVIGGQ 483

Query: 511 NVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVS 570
           N+++GYFKNEEKT E Y VD+ G RWF TGD+G+ H DGCL+IIDRKKD+VKLQ GEYVS
Sbjct: 484 NISMGYFKNEEKTAEDYSVDENGQRWFCTGDIGEFHPDGCLQIIDRKKDLVKLQAGEYVS 543

Query: 571 LGKVEAALIVSPYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQGIVGK--------- 621
           LGKVEAAL   P +DNI   A    SY ++ VV +Q  +   A ++G+ G          
Sbjct: 544 LGKVEAALKNCPLIDNICAFAKSDQSYVISFVVPNQKKLTLLAQQKGVEGSWVDICNNPA 603

Query: 622 -------------NA-RLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDL 667
                        NA +L++FEIP K++L   PWT E GLVT A K+KR+ ++  +  D+
Sbjct: 604 MEAEILKEIREAANAMKLERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELKNHYLKDI 663

Query: 668 ARLY 671
            R+Y
Sbjct: 664 ERMY 667

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses arachidonate and eicosapentaenoate as substrates.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9CZW4|ACSL3_MOUSE Long-chain-fatty-acid--CoA ligase 3 OS=Mus musculus GN=Acsl3 PE=2 SV=2

 Score =  593 bits (1528), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 320/701 (45%), Positives = 430/701 (61%), Gaps = 43/701 (6%)

Query: 1   MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVD-VGGEPGHALRNCR-FTSLVSTSWEGIS 58
           +S Y +   +P  F   L  SK+EK   I    V  +P  A R+      L S  + G  
Sbjct: 30  ISLYTILTYIPFYF---LCESKQEKPNQIKAKPVSSKPDSAYRSINSVDGLASVLYPGCD 86

Query: 59  TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
           TL ++F  +  +  +K LLGTR++++ E E+  NG+ F+K+ LG Y WL+Y   F    +
Sbjct: 87  TLDKVFMYAKNKFKNKRLLGTREILNEEDEIQPNGKIFKKVILGHYNWLSYEDVFIRALD 146

Query: 119 FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETE 178
           F +GL  LG K +  +AIF +TRAEW +A Q CF  N  +VT+YA+LG  A+ + LNETE
Sbjct: 147 FGNGLQMLGQKPKANIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHGLNETE 206

Query: 179 VTTVICGSKEL--KKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQIL 236
           VT +I  SKEL   KL D+   +  ++H+I +D   P+     E      + + A VQ L
Sbjct: 207 VTNIIT-SKELLQTKLKDIVSLVPRLRHIITVDGKPPTWS---EFPKGVIVHTMAAVQAL 262

Query: 237 GRENPVDA---DYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKD 293
           G +  V+      P+ +D+AVIMYTSGSTG+PKGVM++H N++A+++ +   +P LG +D
Sbjct: 263 GVKANVEKKAHSKPLPSDIAVIMYTSGSTGIPKGVMISHSNIIASITGMARRIPRLGEED 322

Query: 294 VYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMAS 353
           VY+ YLPLAHVLEL AE +    G  IGY +P TL D SSKIKKG++GD SVL+PT+MA+
Sbjct: 323 VYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSVLKPTLMAA 382

Query: 354 VPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSK 413
           VP I+DR+   V  KV+      + LF LAY  ++  I+       G    L +  VF  
Sbjct: 383 VPEIMDRIYKNVMNKVNEMSAFQRNLFILAYNYKMEQISK------GCSTPLCDRFVFRN 436

Query: 414 VRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGR 473
           VR +LGG IR +L GGAPLSA TQRF+NIC   P+GQGYGLTE+   GT +EV D + GR
Sbjct: 437 VRRLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESTGAGTITEVWDYNTGR 496

Query: 474 VGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKG 533
           VGAPL C  IKL +W EGGY  +D P PRGEI+I G NVT+GY+KNE KTK  +  D+ G
Sbjct: 497 VGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAKTKTDFFEDENG 556

Query: 534 MRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADP 593
            RW  TGD+G+   DGCL+IIDRKKD+VKLQ GEYVSLGKVEAAL   P +DNI  +A+ 
Sbjct: 557 QRWLCTGDIGEFDPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLPLIDNICAYANS 616

Query: 594 FHSYCVALVVASQPAVEEWAAKQGIVGK-----------------------NARLDKFEI 630
           +HSY +  VV +Q  + E A  +G  G                        +A L+KFEI
Sbjct: 617 YHSYVIGFVVPNQKELTELARTKGFKGTWEELCNSSEMENEVLKVLSEAAISASLEKFEI 676

Query: 631 PAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLY 671
           P KI+L   PWT E GLVT A K+KR+ ++  +  D+ R+Y
Sbjct: 677 PLKIRLSPDPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717

Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 has mainly an anabolic role in energy metabolism (By similarity). Required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins) (By similarity). Mediates hepatic lipogenesis (By similarity). Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O60135|LCF1_SCHPO Long-chain-fatty-acid--CoA ligase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lcf1 PE=3 SV=1

 Score =  362 bits (930), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 226/675 (33%), Positives = 363/675 (53%), Gaps = 65/675 (9%)

Query: 42  RNCRFTS-LVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRE------TEVADN-- 92
           RN  F   LV T  + + TL ++F  S K+ G+K  +G R L+         T+V D   
Sbjct: 20  RNANFPDHLVETYSDDVHTLFDVFRHSVKQFGNKKAMGYRNLVKEHVETKMVTKVVDGEK 79

Query: 93  ---GRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQ 149
               +S+    L +Y +L++   ++    +A  L +LG  K ++  ++A T A W +  +
Sbjct: 80  KEVPKSWSYFELSDYNYLSFNDIYDKALRYAGALRKLGLNKGDKFELYAPTSAFWLLTAE 139

Query: 150 GCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMD 209
            C  +++T+VT Y +LGEE L +SL E+ V  +      LK LV+   ++++++ +I  +
Sbjct: 140 ACLSQSMTIVTAYDTLGEEGLLHSLRESGVRGMYTEGHLLKTLVNPLKEIESLEVIIYRN 199

Query: 210 ANIPSAVSSVEQ-SGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGV 268
                 + ++++     K+  FAD + +      D       ++  IMYTSGSTGLPKGV
Sbjct: 200 DAKEEDIKTIQEIRPNLKLIKFADFEKMSPPVEPDPP--SPEEICCIMYTSGSTGLPKGV 257

Query: 269 MMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTL 328
           +++H N++A V+A++  VP++ SKD  LAYLPLAH+LE   EN+    G  IGY    TL
Sbjct: 258 ILSHKNMVAIVTAIVKHVPEVTSKDYLLAYLPLAHILEFAFENICLAWGGTIGYANVRTL 317

Query: 329 TDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRL 388
            DT+    +  +GD +  RPT+M  VPA+ + VR G+  K++A   + + +F  AY  + 
Sbjct: 318 VDTNC---RNCKGDINTFRPTIMVGVPAVWEMVRKGIMSKLNAASAVKRSVFWTAYYTKA 374

Query: 389 SAINGSWFGAWGLEKLLWNLLVFSKVRAI-LGGRIRFILSGGAPLSADTQRFINICLGAP 447
             +  +  G+  L+       VF+K+R++  GGR+R+ LSGG+ LS DT+RF++I L  P
Sbjct: 375 KLMRHNLPGSCVLDT-----AVFNKIRSMGTGGRLRYTLSGGSALSPDTKRFLSIVL-CP 428

Query: 448 IGQGYGLTETCAGGTFS-----EVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR 502
           +  GYGLTE  A           +DDS+    G+ LPC+ +KL+D  EG Y +   P PR
Sbjct: 429 MLIGYGLTEISAAAMVQNPACFNLDDSA----GSLLPCTEMKLVDCEEGNYNSHGHP-PR 483

Query: 503 GEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVK 562
           GEI + GP++T GY   +++ KE +  D     WF TGDVG++  +G L IIDRKK++VK
Sbjct: 484 GEIWLRGPSLTRGYLNRDKENKESFTPDG----WFRTGDVGELTPEGLLRIIDRKKNLVK 539

Query: 563 LQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQG----- 617
            Q+GEY++L K+E+    S  V NI ++AD      +A++V ++P V + A +Q      
Sbjct: 540 TQNGEYIALEKLESRYRTSSLVSNICVYADQTKVKPLAIIVPNEPVVRKLATEQAGLSPD 599

Query: 618 ---------------------IVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKR 656
                                 +G++      E+   + L+   +T E GLVTAA K++R
Sbjct: 600 ASWEEVCHNKKVRQLVYDDLIRIGRSHHFANIELIQNVVLVPIEFTPENGLVTAAQKLQR 659

Query: 657 EAIRKAFADDLARLY 671
             I   F  ++   Y
Sbjct: 660 RKILDRFKKEIDAAY 674

Esterification, concomitant with transport, of exogenous long-chain fatty acids into metabolically active CoA thioesters for subsequent degradation or incorporation into phospholipids. It may supplement intracellular myristoyl-CoA pools from exogenous myristate. Preferentially acts on C12:0-C16:0 fatty acids with myristic and pentadecanic acid (C15:0) having the highest activities (By similarity). Appears to play a role in the maintenance of cell viability during stationary phase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	672
225459554	697	PREDICTED: long chain acyl-CoA synthetas	0.998	0.962	0.791	0.0
255545494	697	long-chain-fatty-acid CoA ligase, putati	1.0	0.964	0.776	0.0
15224012	691	long chain acyl-CoA synthetase 9 [Arabid	0.991	0.963	0.745	0.0
317373791	697	long-chain acyl-CoA synthetase 1 [Helian	0.998	0.962	0.762	0.0
297842535	691	long chain acyl-CoA synthetase 9 [Arabid	0.991	0.963	0.741	0.0
12049721	693	long chain acyl-CoA synthetase [Brassica	0.991	0.961	0.739	0.0
449449745	695	PREDICTED: long chain acyl-CoA synthetas	0.997	0.964	0.759	0.0
356549152	696	PREDICTED: long chain acyl-CoA synthetas	0.995	0.961	0.741	0.0
84468274	694	putative long chain acyl-CoA synthetase	0.994	0.962	0.733	0.0
449500691	695	PREDICTED: long chain acyl-CoA synthetas	0.997	0.964	0.756	0.0

>gi|225459554|ref|XP_002285853.1| PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Vitis vinifera] gi|302141820|emb|CBI19023.3| unnamed protein product [Vitis vinifera]

 Score = 1143 bits (2957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/696 (79%), Positives = 609/696 (87%), Gaps = 25/696 (3%)

Query: 1   MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTL 60
           MSAY VG+LVPLVFTLL RN+K  KKRG+PVDVGGEPG+A+RN RFTS V ++WEGISTL
Sbjct: 1   MSAYFVGLLVPLVFTLLFRNAKSGKKRGLPVDVGGEPGYAIRNRRFTSPVKSAWEGISTL 60

Query: 61  AELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFA 120
           AELFEQ CK+H DK+LLGTR+LISRETEV  +GRSFEK+HLG+YEWLTYG+ FE IC+FA
Sbjct: 61  AELFEQLCKQHRDKHLLGTRKLISRETEVTADGRSFEKVHLGDYEWLTYGKTFEVICSFA 120

Query: 121 SGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVT 180
           SGLAQLGHK+EER AIFADTR EWF+ALQ CFRRN+TVVTIYASLGEEALC+SLNETEVT
Sbjct: 121 SGLAQLGHKREERAAIFADTREEWFIALQACFRRNITVVTIYASLGEEALCHSLNETEVT 180

Query: 181 TVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGREN 240
           TVICG KELKK++D+SGQLDT+K VICMD +     S  E  G W ITSF+DV+ LGREN
Sbjct: 181 TVICGHKELKKIIDISGQLDTLKRVICMDDSTLCNTSLAEGGGSWTITSFSDVEKLGREN 240

Query: 241 PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGS-KDVYLAYL 299
           PVDAD P+SAD+AVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP LG  +DVYLAYL
Sbjct: 241 PVDADLPLSADIAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPGLGKVEDVYLAYL 300

Query: 300 PLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILD 359
           P+AH+LEL AEN++A +G AIGYG+PLTLTDTSS+IK+GT+GDAS L PTVM +VPAILD
Sbjct: 301 PMAHILELAAENVVAAIGGAIGYGSPLTLTDTSSRIKRGTKGDASALVPTVMTAVPAILD 360

Query: 360 RVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILG 419
           RVRDGVRKKVDAKGGL+KKLFDLAYARRLSAINGSWFGAWGLE LLWN LVF KVRAILG
Sbjct: 361 RVRDGVRKKVDAKGGLAKKLFDLAYARRLSAINGSWFGAWGLESLLWNFLVFRKVRAILG 420

Query: 420 GRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLP 479
           GRIRF+L GGAPLS+DTQRFINICLGAPI QGYGLTE+CAGGTFSE DD+SVGRVGAPLP
Sbjct: 421 GRIRFLLCGGAPLSSDTQRFINICLGAPIVQGYGLTESCAGGTFSEYDDTSVGRVGAPLP 480

Query: 480 CSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYT 539
           CSFIKLI+WPEGGYLTSD PMPRGEIVI GPNVTVGYFKNEEKT EVYKVD++GMRWFYT
Sbjct: 481 CSFIKLINWPEGGYLTSDKPMPRGEIVIGGPNVTVGYFKNEEKTNEVYKVDERGMRWFYT 540

Query: 540 GDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCV 599
           GD+GQ HADGCLEIIDR+KDIVKLQHGEY+SLGKVEAALIVSPYVDNIM+HA+PF +YCV
Sbjct: 541 GDIGQFHADGCLEIIDRRKDIVKLQHGEYLSLGKVEAALIVSPYVDNIMLHANPFRNYCV 600

Query: 600 ALVVASQPAVEEWAAKQGI------------------------VGKNARLDKFEIPAKIK 635
           ALVVASQPAVE+WA KQGI                          K ARL+KFEIPAKIK
Sbjct: 601 ALVVASQPAVEDWALKQGIAFIDFSDLCQKEETVKEVHASLVKAAKQARLEKFEIPAKIK 660

Query: 636 LLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLY 671
           LL   WT E GLVTAALKIKR+ IRK F++DLARLY
Sbjct: 661 LLPDAWTPETGLVTAALKIKRDVIRKRFSEDLARLY 696

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545494|ref|XP_002513807.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis] gi|223546893|gb|EEF48390.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis]

 Score = 1115 bits (2883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/697 (77%), Positives = 612/697 (87%), Gaps = 25/697 (3%)

Query: 1   MSAYIVGVLVPLVFTLLLRNSKKE-KKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGIST 59
           MSAYIVGVLVPLV TLL RNSK   KKRG+P+DVGGEPG+A+RN  F++ + T+WEG+ T
Sbjct: 1   MSAYIVGVLVPLVVTLLFRNSKHNAKKRGVPIDVGGEPGYAIRNAGFSTPLETAWEGVIT 60

Query: 60  LAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNF 119
           +A+LFE +C +H DK+LLGTRQLIS+ETEV+ +GRSFEKLHLGEYEWLTY Q F+ + NF
Sbjct: 61  IAQLFEYACNKHSDKFLLGTRQLISKETEVSGDGRSFEKLHLGEYEWLTYAQVFDKVSNF 120

Query: 120 ASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179
           ASGL  +GH + ERVAIFADTRAEWF+ALQGCFRRNVTVVTIY+SLGEEALC+SLNETEV
Sbjct: 121 ASGLTSIGHLRNERVAIFADTRAEWFIALQGCFRRNVTVVTIYSSLGEEALCHSLNETEV 180

Query: 180 TTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRE 239
           +TVICG  ELKKL D+S QLDTVK VICMD  IPS+ SS+EQSGRW I S ++V+ LG+E
Sbjct: 181 STVICGKNELKKLADISEQLDTVKRVICMDDEIPSSASSLEQSGRWTIISLSNVEKLGQE 240

Query: 240 NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYL 299
            P+DAD P+  D+AVIMYTSGSTGLPKGVMMTH NVLA VS+V  IVP L SKDVYLAYL
Sbjct: 241 KPIDADLPLPNDIAVIMYTSGSTGLPKGVMMTHANVLAVVSSVRKIVPGLESKDVYLAYL 300

Query: 300 PLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILD 359
           PLAH+LEL AEN++AGVGSAIGYGTPLTLTDTS+KIK+GT+GDA+VLRPTVMA+VPAILD
Sbjct: 301 PLAHILELAAENIVAGVGSAIGYGTPLTLTDTSNKIKRGTKGDATVLRPTVMAAVPAILD 360

Query: 360 RVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILG 419
           RVRDGVRKKVDAKGGLSKKLFDLAYARRLSA+NGSWFGAWGLE +LWN LVF KVRA+LG
Sbjct: 361 RVRDGVRKKVDAKGGLSKKLFDLAYARRLSAVNGSWFGAWGLELVLWNFLVFRKVRAVLG 420

Query: 420 GRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLP 479
           GR+RF+LSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSE DDSSVGRVG PLP
Sbjct: 421 GRVRFLLSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEFDDSSVGRVGNPLP 480

Query: 480 CSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYT 539
           C++IKLIDWPEGGYL SDSPMPRGEIVI GP+VTVGYFKNEEKT+EVYKVD++GMRWFYT
Sbjct: 481 CTYIKLIDWPEGGYLISDSPMPRGEIVIGGPSVTVGYFKNEEKTREVYKVDERGMRWFYT 540

Query: 540 GDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCV 599
           GD+G+ HADGCLEIIDRKKDIVKLQHGEYVSLGKVEAAL V PYVDN+M+HADPFH YCV
Sbjct: 541 GDIGRFHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVCPYVDNMMLHADPFHMYCV 600

Query: 600 ALVVASQPAVEEWAAKQGIV------------------------GKNARLDKFEIPAKIK 635
           ALVVA+QPA+EEWA+KQGI                          K ARL+KFEIPAKIK
Sbjct: 601 ALVVAAQPALEEWASKQGIAYANFAELCEKNETKKEVQASLLKDAKKARLEKFEIPAKIK 660

Query: 636 LLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLYE 672
           LLS PWT E+GLVTAALK+KREA+RKAF+D+L++LY+
Sbjct: 661 LLSDPWTPESGLVTAALKLKREAVRKAFSDELSKLYQ 697

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224012|ref|NP_177882.1| long chain acyl-CoA synthetase 9 [Arabidopsis thaliana] gi|75169926|sp|Q9CAP8.1|LACS9_ARATH RecName: Full=Long chain acyl-CoA synthetase 9, chloroplastic gi|12323387|gb|AAG51668.1|AC010704_12 putative acyl-CoA synthetase; 62297-59022 [Arabidopsis thaliana] gi|20805879|gb|AAM28876.1|AF503759_1 long chain acyl-CoA synthetase 9 [Arabidopsis thaliana] gi|332197875|gb|AEE35996.1| long chain acyl-CoA synthetase 9 [Arabidopsis thaliana]

 Score = 1095 bits (2831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/695 (74%), Positives = 596/695 (85%), Gaps = 29/695 (4%)

Query: 1   MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTL 60
           M  Y  GV+VPL  T L++ SKKEKKRG+ VDVGGEPG+A+RN RFT  VS+ WE ISTL
Sbjct: 1   MIPYAAGVIVPLALTFLVQKSKKEKKRGVVVDVGGEPGYAIRNHRFTEPVSSHWEHISTL 60

Query: 61  AELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFA 120
            ELFE SC  H D+  LGTR+LISRE E +++G++FEKLHLG+YEWLT+G+  E +C+FA
Sbjct: 61  PELFEISCNAHSDRVFLGTRKLISREIETSEDGKTFEKLHLGDYEWLTFGKTLEAVCDFA 120

Query: 121 SGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVT 180
           SGL Q+GHK EERVAIFADTR EWF++LQGCFRRNVTVVTIY+SLGEEALC+SLNETEVT
Sbjct: 121 SGLVQIGHKTEERVAIFADTREEWFISLQGCFRRNVTVVTIYSSLGEEALCHSLNETEVT 180

Query: 181 TVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGREN 240
           TVICGSKELKKL+D+S QL+TVK VICMD   PS V+S      W  TSF DVQ LGREN
Sbjct: 181 TVICGSKELKKLMDISQQLETVKRVICMDDEFPSDVNS-----NWMATSFTDVQKLGREN 235

Query: 241 PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLP 300
           PVD ++P+SADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG +D+Y+AYLP
Sbjct: 236 PVDPNFPLSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGKRDIYMAYLP 295

Query: 301 LAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR 360
           LAH+LEL AE+++A +GSAIGYG+PLTLTDTS+KIKKGT+GD + L+PT+M +VPAILDR
Sbjct: 296 LAHILELAAESVMATIGSAIGYGSPLTLTDTSNKIKKGTKGDVTALKPTIMTAVPAILDR 355

Query: 361 VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGG 420
           VRDGVRKKVDAKGGLSKKLFD AYARRLSAINGSWFGAWGLEKLLW++LVF K+RA+LGG
Sbjct: 356 VRDGVRKKVDAKGGLSKKLFDFAYARRLSAINGSWFGAWGLEKLLWDVLVFRKIRAVLGG 415

Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPC 480
           +IR++LSGGAPLS DTQRFINIC+GAPIGQGYGLTETCAGGTFSE +D+SVGRVGAPLPC
Sbjct: 416 QIRYLLSGGAPLSGDTQRFINICVGAPIGQGYGLTETCAGGTFSEFEDTSVGRVGAPLPC 475

Query: 481 SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTG 540
           SF+KL+DW EGGYLTSD PMPRGEIVI G N+T+GYFKNEEKTKEVYKVD+KGMRWFYTG
Sbjct: 476 SFVKLVDWAEGGYLTSDKPMPRGEIVIGGSNITLGYFKNEEKTKEVYKVDEKGMRWFYTG 535

Query: 541 DVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVA 600
           D+G+ H DGCLEIIDRKKDIVKLQHGEYVSLGKVEAAL +SPYV+NIM+HAD F+SYCVA
Sbjct: 536 DIGRFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSISPYVENIMVHADSFYSYCVA 595

Query: 601 LVVASQPAVEEWAAKQGI------------------------VGKNARLDKFEIPAKIKL 636
           LVVASQ  VE WA+KQGI                          K +RL+KFEIPAKIKL
Sbjct: 596 LVVASQHTVEGWASKQGIDFANFEELCTKEQAVKEVYASLVKAAKQSRLEKFEIPAKIKL 655

Query: 637 LSYPWTSEAGLVTAALKIKREAIRKAFADDLARLY 671
           L+ PWT E+GLVTAALK+KR+ IR+ F++DL +LY
Sbjct: 656 LASPWTPESGLVTAALKLKRDVIRREFSEDLTKLY 690

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317373791|gb|ADV16378.1| long-chain acyl-CoA synthetase 1 [Helianthus annuus]

 Score = 1089 bits (2816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/695 (76%), Positives = 600/695 (86%), Gaps = 24/695 (3%)

Query: 1   MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTL 60
           MSAY+VGVL PL+ TL LRN KKEK+RG+P DV GEPG+A+RN RFTS V T+W GI TL
Sbjct: 1   MSAYVVGVLAPLLLTLALRNLKKEKRRGLPADVSGEPGYAIRNYRFTSPVETAWAGIETL 60

Query: 61  AELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFA 120
           A+LFEQ+CK+HGDK LLGTR++ISRETEV  +GRSFEKLHLG+YEW+TYGQ ++ +CNFA
Sbjct: 61  ADLFEQACKKHGDKNLLGTRKIISRETEVNQDGRSFEKLHLGDYEWMTYGQVYQVVCNFA 120

Query: 121 SGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVT 180
           SGL Q+GHK  ERVAIFADTR EWF+ALQ CFRRNVTVVT+YASLGEEA+C+SLNETEVT
Sbjct: 121 SGLVQIGHKSGERVAIFADTREEWFIALQACFRRNVTVVTMYASLGEEAICHSLNETEVT 180

Query: 181 TVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGREN 240
           TVICG+KELKKL+D+SGQ+DTV+ VICMD  + S+    + S  WKI  F++V+ +GREN
Sbjct: 181 TVICGNKELKKLIDISGQIDTVQRVICMDDEVYSSPFLTDGSSSWKIFPFSEVEEIGREN 240

Query: 241 PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLP 300
            V+AD P+ ADVAV+MYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP LG  DVYLAYLP
Sbjct: 241 AVEADLPLPADVAVVMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPGLGGNDVYLAYLP 300

Query: 301 LAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR 360
           LAH+LEL AENLIA VGS+IGYG+PLTLTDTSSKIK+GT+GDASVLRPT+MA+VPAILDR
Sbjct: 301 LAHILELAAENLIAAVGSSIGYGSPLTLTDTSSKIKRGTKGDASVLRPTLMAAVPAILDR 360

Query: 361 VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGG 420
           VRDGVRKKVD+ GGLSK LF+LAY RRLSAINGSW GAWGLEKLLWN LVF KVRAILGG
Sbjct: 361 VRDGVRKKVDSAGGLSKTLFNLAYNRRLSAINGSWLGAWGLEKLLWNYLVFRKVRAILGG 420

Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPC 480
           RIRFILSGGAPLSADTQRFINIC GAPIGQGYGLTETCAGGTFSE DD+SVGRVGAPLPC
Sbjct: 421 RIRFILSGGAPLSADTQRFINICFGAPIGQGYGLTETCAGGTFSEYDDTSVGRVGAPLPC 480

Query: 481 SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTG 540
           S+IKLI+WPEGGYLTSDSPMPRGEIVI GPNVT+GYFKN+EKTKEVYKVD++G+RWFYTG
Sbjct: 481 SYIKLINWPEGGYLTSDSPMPRGEIVIGGPNVTLGYFKNDEKTKEVYKVDERGLRWFYTG 540

Query: 541 DVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVA 600
           D+GQ H DGCLEIIDRKKDIVKLQHGEYVSLGKVEA L VSPYVDNIM++A+ FHSYCVA
Sbjct: 541 DIGQFHKDGCLEIIDRKKDIVKLQHGEYVSLGKVEAVLSVSPYVDNIMVYANSFHSYCVA 600

Query: 601 LVVASQPAVEEWAAKQGI------------------------VGKNARLDKFEIPAKIKL 636
           +VVASQ A+E WA ++GI                          K  RL+KFEIPAKIKL
Sbjct: 601 IVVASQSALESWALQKGIKVVDFASLCEMSETVKEVYGSLVKAAKTGRLEKFEIPAKIKL 660

Query: 637 LSYPWTSEAGLVTAALKIKREAIRKAFADDLARLY 671
           L   WT E+GLVTAALK+KR+ IRK F+D+LA+ Y
Sbjct: 661 LPDAWTPESGLVTAALKLKRDIIRKTFSDELAKFY 695

Source: Helianthus annuus

Species: Helianthus annuus

Genus: Helianthus

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842535|ref|XP_002889149.1| long chain acyl-CoA synthetase 9 [Arabidopsis lyrata subsp. lyrata] gi|297334990|gb|EFH65408.1| long chain acyl-CoA synthetase 9 [Arabidopsis lyrata subsp. lyrata]

 Score = 1088 bits (2813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/695 (74%), Positives = 595/695 (85%), Gaps = 29/695 (4%)

Query: 1   MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTL 60
           M  Y  GV+VPL  T  ++ SKKEKKRG+ VDVGGEPG+A+RN RFT  VS+ WE ISTL
Sbjct: 1   MIPYAAGVIVPLALTFWVQKSKKEKKRGVVVDVGGEPGYAIRNHRFTDPVSSHWEHISTL 60

Query: 61  AELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFA 120
            ELFE SCK H D+  LGTR+LISRE E + +G++FEKLHLG+YEWLT+G+  E +C+FA
Sbjct: 61  PELFEISCKAHSDRVFLGTRKLISREIETSQDGKTFEKLHLGDYEWLTFGKTLEAVCDFA 120

Query: 121 SGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVT 180
           SGL Q+GHK EERVAIFADTR EWF++LQGCFRRNVTVVTIY+SLGEEALC+SLNETEVT
Sbjct: 121 SGLVQIGHKTEERVAIFADTREEWFISLQGCFRRNVTVVTIYSSLGEEALCHSLNETEVT 180

Query: 181 TVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGREN 240
           TVICGSKELKKL+D+  QL+TVK VICMD   PS ++S      W  TSFADVQ LGREN
Sbjct: 181 TVICGSKELKKLMDIGQQLETVKRVICMDDEFPSDLNS-----NWMATSFADVQKLGREN 235

Query: 241 PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLP 300
           PVD ++P+SADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG +D+Y+AYLP
Sbjct: 236 PVDPNFPLSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGKRDIYMAYLP 295

Query: 301 LAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR 360
           LAH+LEL AE+++A +GS+IGYG+PLTLTDTS+KIKKGT+GD + L+PT+M +VPAILDR
Sbjct: 296 LAHILELAAESVMATIGSSIGYGSPLTLTDTSNKIKKGTKGDVTALKPTIMTAVPAILDR 355

Query: 361 VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGG 420
           VRDGVRKKVDAKGGLSK LFD AYARRLSAINGSWFGAWGLEKLLW++LVF K+RA+LGG
Sbjct: 356 VRDGVRKKVDAKGGLSKILFDFAYARRLSAINGSWFGAWGLEKLLWDVLVFRKIRAVLGG 415

Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPC 480
           +IR++LSGGAPLS DTQRFINIC+GAPIGQGYGLTETCAGGTFSE +D+SVGRVGAPLPC
Sbjct: 416 QIRYLLSGGAPLSGDTQRFINICVGAPIGQGYGLTETCAGGTFSEFEDTSVGRVGAPLPC 475

Query: 481 SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTG 540
           SF+KL+DWPEGGYLTSD PMPRGEIVI G N+T+GYFKNEEKTKEVYKVD+KGMRWFYTG
Sbjct: 476 SFVKLVDWPEGGYLTSDKPMPRGEIVIGGSNITLGYFKNEEKTKEVYKVDEKGMRWFYTG 535

Query: 541 DVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVA 600
           D+G+ H DGCLEIIDRKKDIVKLQHGEYVSLGKVEAAL +SPYV+NIM+HAD F+SYCVA
Sbjct: 536 DIGRFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSISPYVENIMVHADSFYSYCVA 595

Query: 601 LVVASQPAVEEWAAKQGI------------------------VGKNARLDKFEIPAKIKL 636
           LVVASQ  VE WA+KQGI                          K +RL+KFEIPAKIKL
Sbjct: 596 LVVASQHTVEGWASKQGIDFANFEELCAKEQAVKEVYASLVKAAKQSRLEKFEIPAKIKL 655

Query: 637 LSYPWTSEAGLVTAALKIKREAIRKAFADDLARLY 671
           L+ PWT E+GLVTAALK+KR+ IR+ F+++L +LY
Sbjct: 656 LASPWTPESGLVTAALKLKRDVIRREFSEELTKLY 690

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12049721|emb|CAC19877.1| long chain acyl-CoA synthetase [Brassica napus]

 Score = 1087 bits (2810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/696 (73%), Positives = 593/696 (85%), Gaps = 30/696 (4%)

Query: 1   MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVD-VGGEPGHALRNCRFTSLVSTSWEGIST 59
           M  Y  GV+VPL  TLL+RN+KK+KKRG+ VD VGGEPGH +RN RF   VS+ WE IST
Sbjct: 1   MIPYAAGVIVPLALTLLVRNAKKDKKRGVVVDDVGGEPGHTVRNHRFKDPVSSHWEDIST 60

Query: 60  LAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNF 119
           L ELFE SCK H D++ LGTR+LI+RE E +++G+ FEKLHLG+YEW T+G+  E +C+F
Sbjct: 61  LPELFEISCKSHSDRFFLGTRRLIAREVETSEDGKVFEKLHLGDYEWKTFGETLEAVCSF 120

Query: 120 ASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179
           ASGL Q+GHK EERVAIFADTR EWF+ALQGCFRRNVTVVTIY+SLGEEALC+SLNETEV
Sbjct: 121 ASGLVQIGHKSEERVAIFADTREEWFIALQGCFRRNVTVVTIYSSLGEEALCHSLNETEV 180

Query: 180 TTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRE 239
           TTVICG+KELKKL+D+S QL+TVK VICMD   PS  SS      W  TS ADVQ LGRE
Sbjct: 181 TTVICGNKELKKLMDISQQLETVKRVICMDDEFPSEASST-----WTTTSLADVQKLGRE 235

Query: 240 NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYL 299
           +PVD  +P+SADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG +D Y+AYL
Sbjct: 236 SPVDPSFPLSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGKRDTYMAYL 295

Query: 300 PLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILD 359
           PLAH+LEL AE+++A +GSAIGYG+PLTLTDTS+KIKKGT+GD + L+PT+M +VPAILD
Sbjct: 296 PLAHILELAAESVMATIGSAIGYGSPLTLTDTSNKIKKGTKGDVTALKPTIMTAVPAILD 355

Query: 360 RVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILG 419
           RVRDGVRKKVDAKGG +KKLFD AYARRLSAINGSWFGAWGLEKLLW++LVF K+RA+LG
Sbjct: 356 RVRDGVRKKVDAKGGAAKKLFDFAYARRLSAINGSWFGAWGLEKLLWDVLVFGKIRAVLG 415

Query: 420 GRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLP 479
           G++R++LSGGAPLS DTQRFINIC+GAPIGQGYGLTETCAGGTFSE DD+SVGRVGAPLP
Sbjct: 416 GQLRYLLSGGAPLSGDTQRFINICVGAPIGQGYGLTETCAGGTFSEFDDTSVGRVGAPLP 475

Query: 480 CSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYT 539
           CSF+KLIDWPEGGYL SD PMPRGEIVI G N+T+GYFKNEEKTKEVYKVD+KGMRWFYT
Sbjct: 476 CSFVKLIDWPEGGYLISDKPMPRGEIVIGGSNITLGYFKNEEKTKEVYKVDEKGMRWFYT 535

Query: 540 GDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCV 599
           GD+GQ H DGCLEIIDRKKDIVKLQHGEYVSLGKVEAAL +SPYV+NIM+HADPF+SYCV
Sbjct: 536 GDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSISPYVENIMVHADPFYSYCV 595

Query: 600 ALVVASQPAVEEWAAKQGI------------------------VGKNARLDKFEIPAKIK 635
           ALVVA+Q  +E WA+KQGI                          K +RL+KFEIPAKIK
Sbjct: 596 ALVVAAQQTLEGWASKQGIEFTNFEELCAKEQPVKEVYASLVKAAKQSRLEKFEIPAKIK 655

Query: 636 LLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLY 671
           +L+ PWT E+GLVTAALK+KR+ IRK F++DL +LY
Sbjct: 656 VLAAPWTPESGLVTAALKLKRDVIRKEFSEDLTKLY 691

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449745|ref|XP_004142625.1| PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic-like [Cucumis sativus]

 Score = 1081 bits (2796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/695 (75%), Positives = 594/695 (85%), Gaps = 25/695 (3%)

Query: 1   MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTL 60
           MSAYIVGVLVP+V TL  RNSKK KKRG+PVD GG+PG A+RN +    V T+WEGI TL
Sbjct: 1   MSAYIVGVLVPVVVTLFFRNSKKAKKRGLPVDAGGDPGFAVRNSKCPEPVETAWEGIFTL 60

Query: 61  AELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFA 120
           AELFE SCK+H D+ LLGTR+LI +ETEV  +GRSFEK HLG+YEWLTYGQAFE +C+FA
Sbjct: 61  AELFEYSCKQHQDRRLLGTRKLIEKETEVTADGRSFEKFHLGDYEWLTYGQAFEAVCSFA 120

Query: 121 SGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVT 180
           SGL Q+GH K ER AIFADTR EWF+ALQGCFRRN+TVVTIYASLGEEALC+SLNETEVT
Sbjct: 121 SGLVQIGHNKGERAAIFADTREEWFIALQGCFRRNITVVTIYASLGEEALCHSLNETEVT 180

Query: 181 TVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGREN 240
           TVICG KEL KL+ +SGQL TVK+V+CMD  IP ++ + E +G WKITSFA VQ+LG+E 
Sbjct: 181 TVICGQKELSKLLGISGQLKTVKNVVCMD-EIPQSIINSEPNGNWKITSFAKVQLLGQEC 239

Query: 241 PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLP 300
            V A+ P+SAD+AVIMYTSGSTGLPKGVMMTH NVLATVSAVMTIVP LG KD YLAYLP
Sbjct: 240 NVGAELPMSADIAVIMYTSGSTGLPKGVMMTHANVLATVSAVMTIVPGLGKKDTYLAYLP 299

Query: 301 LAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR 360
           +AH+LEL AEN++AGVG AIGYG+PLTLTDTS+K+K+GT+GDA+ L PTVM +VPAILDR
Sbjct: 300 MAHILELAAENVMAGVGCAIGYGSPLTLTDTSNKVKRGTKGDATALVPTVMTAVPAILDR 359

Query: 361 VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGG 420
           VR+GV KKV+  GGL+KKLFDLAY+RRLSA+NGSWFGAWGLE LLWN LVF KV+AILGG
Sbjct: 360 VREGVLKKVNGTGGLAKKLFDLAYSRRLSAMNGSWFGAWGLEMLLWNFLVFRKVQAILGG 419

Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPC 480
           R+RF+LSGGAPLS DTQRFINICL APIGQGYGLTETCAGGTFSE DD +VGRVGAPLPC
Sbjct: 420 RLRFLLSGGAPLSGDTQRFINICLSAPIGQGYGLTETCAGGTFSEFDDLTVGRVGAPLPC 479

Query: 481 SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTG 540
           SF+KLIDWPEGGYLTSD P PRGEIVI GPNVT+GYFKNEEKTKE YKVD++GMRWFYTG
Sbjct: 480 SFVKLIDWPEGGYLTSDLPRPRGEIVIGGPNVTLGYFKNEEKTKESYKVDERGMRWFYTG 539

Query: 541 DVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVA 600
           D+GQ HADGCLEIIDRKKDIVKLQHGEYVSLGKVEAAL VSPYVDNIM+HADPFHS+CVA
Sbjct: 540 DIGQFHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMLHADPFHSFCVA 599

Query: 601 LVVASQPAVEEWAAKQGI------------------------VGKNARLDKFEIPAKIKL 636
           LVV SQ AVE WA+KQGI                          K ARL KFEIPAKIKL
Sbjct: 600 LVVPSQHAVEGWASKQGIDTSDFAELCHKEEVVKEVQASLVKEAKKARLQKFEIPAKIKL 659

Query: 637 LSYPWTSEAGLVTAALKIKREAIRKAFADDLARLY 671
           LS PWT E+GLVTAALK+KR+ IRKAF++DL++LY
Sbjct: 660 LSNPWTPESGLVTAALKLKRDLIRKAFSEDLSKLY 694

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549152|ref|XP_003542961.1| PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic-like [Glycine max]

 Score = 1078 bits (2787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/696 (74%), Positives = 596/696 (85%), Gaps = 27/696 (3%)

Query: 1   MSAYIVGVLVPLVFTLLLRN-SKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGIST 59
           M+ YI GV+VPL+ TL++RN S  +++RG+PV+VGGEPG A+RN RF + V ++WEG++T
Sbjct: 1   MTPYIFGVVVPLLVTLIIRNNSNPKRRRGVPVEVGGEPGLAIRNRRFEAPVQSAWEGVAT 60

Query: 60  LAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNF 119
           LAELFE++CK H ++ LLGTR ++ RE E   +GRSFEKLHLG+Y+WL+Y + F+ +  F
Sbjct: 61  LAELFEEACKTHAERLLLGTRGVLQREVETGQDGRSFEKLHLGDYDWLSYDRVFDVVSGF 120

Query: 120 ASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179
           ASGLA +GH +EER AIFADTR EWF+ALQGCFRRNVTVVT+YASLGEEALCYSLNETEV
Sbjct: 121 ASGLACIGHVREERAAIFADTRQEWFMALQGCFRRNVTVVTMYASLGEEALCYSLNETEV 180

Query: 180 TTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRE 239
           TTVICG KEL+ LV++SGQLD+VK VICMD +IPS  SS+     W ITSFA+V  LGRE
Sbjct: 181 TTVICGKKELRTLVNISGQLDSVKRVICMDDDIPSDASSIAYD--WTITSFAEVVKLGRE 238

Query: 240 NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYL 299
           NPVDAD P+SADVAVIMYTSGSTGLPKGVMMTHGNVLAT+SAVMTIVPD+G+KD+YLAYL
Sbjct: 239 NPVDADLPLSADVAVIMYTSGSTGLPKGVMMTHGNVLATLSAVMTIVPDIGTKDIYLAYL 298

Query: 300 PLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILD 359
           P+AH+LEL AENL+A VG  IGYG+PLT TDTS+KIKKGT+GDA+ LRPT+MA+VPAILD
Sbjct: 299 PMAHILELAAENLMAAVGVPIGYGSPLTFTDTSNKIKKGTKGDATALRPTLMAAVPAILD 358

Query: 360 RVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILG 419
           RVRDGV KKV+A GGL KKLF LAYARRL A+NGSWFGAWGLEK LW+ LVF KVRAILG
Sbjct: 359 RVRDGVFKKVNATGGLPKKLFHLAYARRLQAVNGSWFGAWGLEKALWDFLVFRKVRAILG 418

Query: 420 GRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLP 479
           GRIRFILSGGAPLS DTQ+FINICLGAPIGQGYGLTETCAGGTFS+VDD+SVGRVG PLP
Sbjct: 419 GRIRFILSGGAPLSGDTQKFINICLGAPIGQGYGLTETCAGGTFSDVDDTSVGRVGPPLP 478

Query: 480 CSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYT 539
           CSFIKLIDWPEGGYL +DSPM RGEIVI GPNVT+GYFKNEEKTKE YKVD++GMRWFYT
Sbjct: 479 CSFIKLIDWPEGGYLINDSPMARGEIVIGGPNVTLGYFKNEEKTKESYKVDERGMRWFYT 538

Query: 540 GDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCV 599
           GD+G+VH DGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSP+VDNIM+HADPFHSY V
Sbjct: 539 GDIGRVHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPFVDNIMVHADPFHSYSV 598

Query: 600 ALVVASQPAVEEWAAKQGIV------------------------GKNARLDKFEIPAKIK 635
           ALVV SQ  +EEWA+++GI                         G+ ARL+KFEIPAKIK
Sbjct: 599 ALVVGSQSTLEEWASEKGISSSNFSELCTKEETLKEVHASLVKEGQKARLEKFEIPAKIK 658

Query: 636 LLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLY 671
           LLS PWT E+GLVTAALK+KREAI+K F ++L+ LY
Sbjct: 659 LLSDPWTPESGLVTAALKLKREAIKKTFDEELSELY 694

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|84468274|dbj|BAE71220.1| putative long chain acyl-CoA synthetase 9 [Trifolium pratense]

 Score = 1075 bits (2781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/695 (73%), Positives = 595/695 (85%), Gaps = 27/695 (3%)

Query: 1   MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTL 60
           M+AYI+G +VPLV   L +N+K  K+RG+P DV G+PG A+RN R TS ++++WEG++TL
Sbjct: 1   MNAYIIGFVVPLVI-YLFKNAKSRKRRGLPADVAGDPGFAVRNHRVTSPMTSAWEGVTTL 59

Query: 61  AELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFA 120
            ELFE++C+EH  + LLGTR+LISRE E + +GRSFEKL LGEY+W+TYG  FE++ +FA
Sbjct: 60  VELFERACREHHHRLLLGTRELISREIETSSDGRSFEKLDLGEYKWITYGTVFESVTSFA 119

Query: 121 SGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVT 180
           SGLA+LGH +EER AIFA+TR EWF+ALQ CFRRNVTVVTIYASLGEEALC+SLNETEV 
Sbjct: 120 SGLAKLGHVREERAAIFAETREEWFIALQACFRRNVTVVTIYASLGEEALCHSLNETEVA 179

Query: 181 TVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGREN 240
           TVICG KELK LV+++GQLD+VK VIC+D ++PS  SS +   RW ITSF+DV+ LGREN
Sbjct: 180 TVICGRKELKSLVNIAGQLDSVKRVICIDNDVPSDASSAQH--RWTITSFSDVEKLGREN 237

Query: 241 PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLP 300
           P++AD P+SADVAVIMYTSGSTGLPKGVMMTHGN+LATVSAVMTIVP+LG KDVYLAYLP
Sbjct: 238 PIEADLPLSADVAVIMYTSGSTGLPKGVMMTHGNILATVSAVMTIVPNLGPKDVYLAYLP 297

Query: 301 LAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR 360
           +AH+LEL+AENLIA VG  IGYGTPLTLTDTS+K+KKGT+GDAS L PTVMA+VPAILDR
Sbjct: 298 MAHILELIAENLIASVGGCIGYGTPLTLTDTSNKVKKGTKGDASALSPTVMAAVPAILDR 357

Query: 361 VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGG 420
           VRDGV KKV+AKGGLSK+LFDLAY RRL AINGSWFGAWGLEK LWN LVF K++AILGG
Sbjct: 358 VRDGVFKKVNAKGGLSKQLFDLAYTRRLKAINGSWFGAWGLEKFLWNFLVFKKIQAILGG 417

Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPC 480
           RIRFIL GGAPLS DTQRFINICLGAPIGQGYGLTETCAGG+FS+ DD+SVGRVG P+PC
Sbjct: 418 RIRFILCGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGGSFSDFDDTSVGRVGPPIPC 477

Query: 481 SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTG 540
           S+IKLIDWPEGGY T+DSPMPRGEIVI GPN+T+GYFKNEEKT+E YKVD++G+RWFYTG
Sbjct: 478 SYIKLIDWPEGGYSTTDSPMPRGEIVIGGPNITLGYFKNEEKTRESYKVDERGIRWFYTG 537

Query: 541 DVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVA 600
           DVG+ HADGCLEIIDRKKDIVKLQHGEYVSLGKVEAA++ SP+VDNIM++AD F SYCVA
Sbjct: 538 DVGRFHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAAILGSPFVDNIMLYADSFQSYCVA 597

Query: 601 LVVASQPAVEEWAAKQGIV------------------------GKNARLDKFEIPAKIKL 636
           LV  S+PA+EEWA+KQGI                          K ARL+KFEIPAKIKL
Sbjct: 598 LVAVSRPALEEWASKQGIAYSDISELCGKEEAVKEVHASLVKEAKKARLEKFEIPAKIKL 657

Query: 637 LSYPWTSEAGLVTAALKIKREAIRKAFADDLARLY 671
           LS PWT E GLVTAALKIKR+ IRK F ++L++LY
Sbjct: 658 LSDPWTPETGLVTAALKIKRDIIRKTFQEELSKLY 692

Source: Trifolium pratense

Species: Trifolium pratense

Genus: Trifolium

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449500691|ref|XP_004161169.1| PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic-like [Cucumis sativus]

 Score = 1075 bits (2781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/695 (75%), Positives = 592/695 (85%), Gaps = 25/695 (3%)

Query: 1   MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTL 60
           MSAYIVGVLVP+V TL  RNSKK KKRG+PVD GG+PG A+RN +    V T+WEGI TL
Sbjct: 1   MSAYIVGVLVPVVVTLFFRNSKKAKKRGLPVDAGGDPGFAVRNSKCPEPVETAWEGIFTL 60

Query: 61  AELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFA 120
           AELFE SCK+H D+ LLGTR+LI +ETEV  +GRSFEK HLG+YEWLTYGQAFE +C+FA
Sbjct: 61  AELFEYSCKQHQDRRLLGTRKLIEKETEVTADGRSFEKFHLGDYEWLTYGQAFEAVCSFA 120

Query: 121 SGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVT 180
           SGL Q+GH K ER AIFADTR EWF+ALQGCFRRN+TVVTIYASLGEEALC+SLNETEVT
Sbjct: 121 SGLVQIGHNKGERAAIFADTREEWFIALQGCFRRNITVVTIYASLGEEALCHSLNETEVT 180

Query: 181 TVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGREN 240
           TVICG KEL KL+ +SGQL TVK+V+CMD  IP ++ + E +G WKITSFA VQ+LG+E 
Sbjct: 181 TVICGQKELSKLLGISGQLKTVKNVVCMD-EIPQSIINSEPNGNWKITSFAKVQLLGQEC 239

Query: 241 PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLP 300
            V A+ P+SAD+AVIMYTSGSTGLPKGVMMTH NVLATVSAVMTIVP LG KD YLAYLP
Sbjct: 240 NVGAELPMSADIAVIMYTSGSTGLPKGVMMTHANVLATVSAVMTIVPGLGKKDTYLAYLP 299

Query: 301 LAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR 360
           +AH+LEL AEN++AGVG AIGYG+PLTLTDTS+K+K+GT+GDA+ L PTVM +VPAILDR
Sbjct: 300 MAHILELAAENVMAGVGCAIGYGSPLTLTDTSNKVKRGTKGDATALVPTVMTAVPAILDR 359

Query: 361 VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGG 420
           VR+GV KKV+  GGL+KKLFDLAY+RRLSA+NGSWFGAWGLE LLWN LVF KV+AILGG
Sbjct: 360 VREGVLKKVNGTGGLAKKLFDLAYSRRLSAMNGSWFGAWGLEMLLWNFLVFRKVQAILGG 419

Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPC 480
           R+RF+LSGGAPLS DTQRFINICL APIGQGYGLTETCAGGTFSE DD +VGRVGAPLPC
Sbjct: 420 RLRFLLSGGAPLSGDTQRFINICLSAPIGQGYGLTETCAGGTFSEFDDLTVGRVGAPLPC 479

Query: 481 SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTG 540
           SF+KLIDWPEGGYLTSD P PRGEIVI GPNVT+GYFKNEEK K V KVD++GMRWFYTG
Sbjct: 480 SFVKLIDWPEGGYLTSDLPRPRGEIVIGGPNVTLGYFKNEEKLKNVAKVDERGMRWFYTG 539

Query: 541 DVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVA 600
           D+GQ HADGCLEIIDRKKDIVKLQHGEYVSLGKVEAAL VSPYVDNIM+HADPFHS+CVA
Sbjct: 540 DIGQFHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMLHADPFHSFCVA 599

Query: 601 LVVASQPAVEEWAAKQGI------------------------VGKNARLDKFEIPAKIKL 636
           LVV SQ AVE WA+KQGI                          K ARL KFEIPAKIKL
Sbjct: 600 LVVPSQHAVEGWASKQGIDTSDFAELCHKEEVVKEVQASLVKEAKKARLQKFEIPAKIKL 659

Query: 637 LSYPWTSEAGLVTAALKIKREAIRKAFADDLARLY 671
           LS PWT E+GLVTAALK+KR+ IRKAF++DL++LY
Sbjct: 660 LSNPWTPESGLVTAALKLKRDLIRKAFSEDLSKLY 694

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	672
TAIR|locus:2204765	691	LACS9 "AT1G77590" [Arabidopsis	0.912	0.887	0.781	3.5e-288
TAIR|locus:2058384	720	LACS8 "AT2G04350" [Arabidopsis	0.913	0.852	0.639	2.6e-239
UNIPROTKB|F1MBW3	722	ACSL4 "Uncharacterized protein	0.904	0.842	0.480	9.8e-159
UNIPROTKB|O60488	711	ACSL4 "Long-chain-fatty-acid--	0.903	0.853	0.478	1.6e-158
UNIPROTKB|F1SR72	720	ACSL3 "Uncharacterized protein	0.903	0.843	0.478	2.6e-158
UNIPROTKB|F1PEH9	670	ACSL4 "Uncharacterized protein	0.857	0.859	0.496	7.9e-157
UNIPROTKB|F1P451	720	ACSL3 "Uncharacterized protein	0.875	0.816	0.482	1.6e-156
UNIPROTKB|J9P9G0	720	ACSL3 "Uncharacterized protein	0.904	0.844	0.474	2.1e-156
UNIPROTKB|O95573	720	ACSL3 "Long-chain-fatty-acid--	0.904	0.844	0.472	2.1e-156
UNIPROTKB|F1MEX9	720	ACSL3 "Uncharacterized protein	0.904	0.844	0.469	3.4e-156

TAIR|locus:2204765 LACS9 "AT1G77590" [Arabidopsis thaliana (taxid:3702)]

 Score = 2597 (919.2 bits), Expect = 3.5e-288, Sum P(2) = 3.5e-288
 Identities = 483/618 (78%), Positives = 551/618 (89%)

Query:     1 MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTL 60
             M  Y  GV+VPL  T L++ SKKEKKRG+ VDVGGEPG+A+RN RFT  VS+ WE ISTL
Sbjct:     1 MIPYAAGVIVPLALTFLVQKSKKEKKRGVVVDVGGEPGYAIRNHRFTEPVSSHWEHISTL 60

Query:    61 AELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFA 120
              ELFE SC  H D+  LGTR+LISRE E +++G++FEKLHLG+YEWLT+G+  E +C+FA
Sbjct:    61 PELFEISCNAHSDRVFLGTRKLISREIETSEDGKTFEKLHLGDYEWLTFGKTLEAVCDFA 120

Query:   121 SGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVT 180
             SGL Q+GHK EERVAIFADTR EWF++LQGCFRRNVTVVTIY+SLGEEALC+SLNETEVT
Sbjct:   121 SGLVQIGHKTEERVAIFADTREEWFISLQGCFRRNVTVVTIYSSLGEEALCHSLNETEVT 180

Query:   181 TVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGREN 240
             TVICGSKELKKL+D+S QL+TVK VICMD   PS V+S      W  TSF DVQ LGREN
Sbjct:   181 TVICGSKELKKLMDISQQLETVKRVICMDDEFPSDVNS-----NWMATSFTDVQKLGREN 235

Query:   241 PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLP 300
             PVD ++P+SADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG +D+Y+AYLP
Sbjct:   236 PVDPNFPLSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGKRDIYMAYLP 295

Query:   301 LAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR 360
             LAH+LEL AE+++A +GSAIGYG+PLTLTDTS+KIKKGT+GD + L+PT+M +VPAILDR
Sbjct:   296 LAHILELAAESVMATIGSAIGYGSPLTLTDTSNKIKKGTKGDVTALKPTIMTAVPAILDR 355

Query:   361 VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGG 420
             VRDGVRKKVDAKGGLSKKLFD AYARRLSAINGSWFGAWGLEKLLW++LVF K+RA+LGG
Sbjct:   356 VRDGVRKKVDAKGGLSKKLFDFAYARRLSAINGSWFGAWGLEKLLWDVLVFRKIRAVLGG 415

Query:   421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPC 480
             +IR++LSGGAPLS DTQRFINIC+GAPIGQGYGLTETCAGGTFSE +D+SVGRVGAPLPC
Sbjct:   416 QIRYLLSGGAPLSGDTQRFINICVGAPIGQGYGLTETCAGGTFSEFEDTSVGRVGAPLPC 475

Query:   481 SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTG 540
             SF+KL+DW EGGYLTSD PMPRGEIVI G N+T+GYFKNEEKTKEVYKVD+KGMRWFYTG
Sbjct:   476 SFVKLVDWAEGGYLTSDKPMPRGEIVIGGSNITLGYFKNEEKTKEVYKVDEKGMRWFYTG 535

Query:   541 DVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVA 600
             D+G+ H DGCLEIIDRKKDIVKLQHGEYVSLGKVEAAL +SPYV+NIM+HAD F+SYCVA
Sbjct:   536 DIGRFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSISPYVENIMVHADSFYSYCVA 595

Query:   601 LVVASQPAVEEWAAKQGI 618
             LVVASQ  VE WA+KQGI
Sbjct:   596 LVVASQHTVEGWASKQGI 613

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISS;IDA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2058384 LACS8 "AT2G04350" [Arabidopsis thaliana (taxid:3702)]

 Score = 2136 (757.0 bits), Expect = 2.6e-239, Sum P(2) = 2.6e-239
 Identities = 393/615 (63%), Positives = 491/615 (79%)

Query:     5 IVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTLAELF 64
             IV +LVP++ +++L  +KK KKRG+P+ VGGE G+ +R+ R   LV   WEG +T+  LF
Sbjct:    28 IVALLVPVLLSVVLNGTKKGKKRGVPIKVGGEEGYTMRHARAPELVDVPWEGAATMPALF 87

Query:    65 EQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLA 124
             EQSCK++    LLGTR+ I +E   A +GR FEKLHLGEY+W +YG+ FE +CNFASGL 
Sbjct:    88 EQSCKKYSKDRLLGTREFIDKEFITASDGRKFEKLHLGEYKWQSYGEVFERVCNFASGLV 147

Query:   125 QLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVIC 184
              +GH  ++RVAIF+DTRAEWF+A QGCFR+++TVVTIYASLGEEAL YSLNET V+T+IC
Sbjct:   148 NVGHNVDDRVAIFSDTRAEWFIAFQGCFRQSITVVTIYASLGEEALIYSLNETRVSTLIC 207

Query:   185 GSKELKKLVDLSGQLDTVKHVICMDAN-IPSAVSSVEQSGRWKITSFADVQILGRENPVD 243
              SK+LKKL  +   L TVK++I ++ + +  A S V   G   ++S ++V+ LG++N V 
Sbjct:   208 DSKQLKKLSAIQSSLKTVKNIIYIEEDGVDVASSDVNSMGDITVSSISEVEKLGQKNAVQ 267

Query:   244 ADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAH 303
                P    VAVIM+TSGSTGLPKGVM+THGN++AT + VM +VP L   D Y+AYLPLAH
Sbjct:   268 PILPSKNGVAVIMFTSGSTGLPKGVMITHGNLVATAAGVMKVVPKLDKNDTYIAYLPLAH 327

Query:   304 VLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRD 363
             V EL AE ++   GSAIGYG+ +TLTDTS+K+KKGT+GD S L+PT+M +VPAILDRVR+
Sbjct:   328 VFELEAEIVVFTSGSAIGYGSAMTLTDTSNKVKKGTKGDVSALKPTIMTAVPAILDRVRE 387

Query:   364 GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIR 423
             GV KKV+ KGG++K LFD AY RRL+A++GSWFGAWGLEK+LW+ LVF K+RA+LGG IR
Sbjct:   388 GVLKKVEEKGGMAKTLFDFAYKRRLAAVDGSWFGAWGLEKMLWDALVFKKIRAVLGGHIR 447

Query:   424 FILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFI 483
             F+L GGAPLS D+QRFINIC+G+PIGQGYGLTETCAG TFSE DD +VGRVG PLPC ++
Sbjct:   448 FMLVGGAPLSPDSQRFINICMGSPIGQGYGLTETCAGATFSEWDDPAVGRVGPPLPCGYV 507

Query:   484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVG 543
             KL+ W EGGY  SD PMPRGEIV+ G +VT GYF N+EKT EVYKVD+KG RWFYTGD+G
Sbjct:   508 KLVSWEEGGYRISDKPMPRGEIVVGGNSVTAGYFNNQEKTDEVYKVDEKGTRWFYTGDIG 567

Query:   544 QVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVALVV 603
             + H DGCLE+IDRKKDIVKLQHGEYVSLGKVEAAL  S YVDNIM+HADP +SYCVALVV
Sbjct:   568 RFHPDGCLEVIDRKKDIVKLQHGEYVSLGKVEAALGSSNYVDNIMVHADPINSYCVALVV 627

Query:   604 ASQPAVEEWAAKQGI 618
              S+ A+E+WA + G+
Sbjct:   628 PSRGALEKWAEEAGV 642

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISS;IDA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS;IDA

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|F1MBW3 ACSL4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 1430 (508.4 bits), Expect = 9.8e-159, Sum P(2) = 9.8e-159
 Identities = 302/628 (48%), Positives = 398/628 (63%)

Query:     1 MSAYIVGVLVPLVFTLLLRNSKKEK---KRGIPVDVGGEPGHALRNC-RFTSLVSTSWEG 56
             ++ Y   + +P  F   L N+KK+    KR        +PG   R+   F SL      G
Sbjct:    30 ITIYSALIFIPWYF---LTNAKKKNAMAKRIKAKPTSDKPGSPYRSVTHFDSLAVIDIPG 86

Query:    57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETI 116
               TL +LF+ +  + G K  LGTR+++S E E+  NG+ F+KL LG Y+WL Y +    +
Sbjct:    87 ADTLDKLFDHAVSKFGKKESLGTREVLSEENEMQPNGKVFKKLILGNYKWLNYLEVNRRV 146

Query:   117 CNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNE 176
              NF SGL  LG K +  +AIF +TRAEW +A Q CF+ N  +VT+YA+LG EA+ + LNE
Sbjct:   147 NNFGSGLTALGLKPKSTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGREAVVHGLNE 206

Query:   177 TEVTTVICGSKELK-KLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQI 235
             +E T +I   + L+ KL      ++ VKH+I +D N    ++  E    ++I S   V+ 
Sbjct:   207 SEATYLITSVELLESKLKTALIDINCVKHIIYVD-N--KTINKAEYPEGFEIHSMQSVEE 263

Query:   236 LGR--EN-PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSK 292
             LG   EN  V  + P  +D+A++MYTSGSTG PKGVMM H N++A ++     +P LG K
Sbjct:   264 LGSKPENLSVSPNRPTPSDLAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQCERIPGLGPK 323

Query:   293 DVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMA 352
             D Y+ YLPLAHVLEL AE      G  IGY +PLTL+D SSKIKKG++GD +VL+PT+MA
Sbjct:   324 DTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDCTVLKPTLMA 383

Query:   353 SVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFS 412
             +VP I+DR+   V  KV     + K LF + Y  +L  I        G +  L NL++F 
Sbjct:   384 AVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLEQIKK------GYDAPLCNLILFK 437

Query:   413 KVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVG 472
             KV+A+LGG +R +LSGGAPLS  TQRF+N+C   P+GQGYGLTETC  GT +EV D + G
Sbjct:   438 KVKALLGGNVRMMLSGGAPLSPQTQRFMNVCFCCPVGQGYGLTETCGAGTVTEVTDYTTG 497

Query:   473 RVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDK 532
             RVGAPL C  IKL DW EGGY   D P PRGEIVI G N+++GYFKNEEKT E Y VD+ 
Sbjct:   498 RVGAPLICCEIKLKDWQEGGYTIHDKPNPRGEIVIGGKNISMGYFKNEEKTAEDYSVDEN 557

Query:   533 GMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHAD 592
             G RWF TGD+G+ H DGCL+IIDRKKD+VKLQ GEYVSLGKVEAAL   P +DNI   A 
Sbjct:   558 GQRWFCTGDIGEFHPDGCLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPLIDNICAFAK 617

Query:   593 PFHSYCVALVVASQPAVEEWAAKQGIVG 620
                SY ++ VV +Q  +   A ++G+ G
Sbjct:   618 SDQSYVISFVVPNQQKLTLLAQQKGVEG 645

GO:0060136 "embryonic process involved in female pregnancy" evidence=IEA

GO:0047676 "arachidonate-CoA ligase activity" evidence=IEA

GO:0032307 "negative regulation of prostaglandin secretion" evidence=IEA

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

UNIPROTKB|O60488 ACSL4 "Long-chain-fatty-acid--CoA ligase 4" [Homo sapiens (taxid:9606)]

 Score = 1421 (505.3 bits), Expect = 1.6e-158, Sum P(2) = 1.6e-158
 Identities = 301/629 (47%), Positives = 399/629 (63%)

Query:     1 MSAYIVGVLVPLVFTLLLRNSKKEK---KRGIPVDVGGEPGHALRNC-RFTSLVSTSWEG 56
             ++ Y   + +P  F   L N+KK+    KR        +PG   R+   F SL      G
Sbjct:    19 ITIYSALIFIPWYF---LTNAKKKNAMAKRIKAKPTSDKPGSPYRSVTHFDSLAVIDIPG 75

Query:    57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETI 116
               TL +LF+ +  + G K  LGTR+++S E E+  NG+ F+KL LG Y+W+ Y +    +
Sbjct:    76 ADTLDKLFDHAVSKFGKKDSLGTREILSEENEMQPNGKVFKKLILGNYKWMNYLEVNRRV 135

Query:   117 CNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNE 176
              NF SGL  LG K +  +AIF +TRAEW +A Q CF+ N  +VT+YA+LG+EA+ + LNE
Sbjct:   136 NNFGSGLTALGLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGKEAVVHGLNE 195

Query:   177 TEVTTVICGSKELK-KLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQI 235
             +E + +I   + L+ KL      +  VKH+I +D N   A++  E    ++I S   V+ 
Sbjct:   196 SEASYLITSVELLESKLKTALLDISCVKHIIYVD-N--KAINKAEYPEGFEIHSMQSVEE 252

Query:   236 LGRENPVDADYPVS----ADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGS 291
             LG  NP +   P S    +D+A++MYTSGSTG PKGVMM H N++A ++     +P LG 
Sbjct:   253 LG-SNPENLGIPPSRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQCERIPGLGP 311

Query:   292 KDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVM 351
             KD Y+ YLPLAHVLEL AE      G  IGY +PLTL+D SSKIKKG++GD +VL+PT+M
Sbjct:   312 KDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDCTVLKPTLM 371

Query:   352 ASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVF 411
             A+VP I+DR+   V  KV     + K LF + Y  +L  I        G +  L NLL+F
Sbjct:   372 AAVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLEQIKK------GYDAPLCNLLLF 425

Query:   412 SKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSV 471
              KV+A+LGG +R +LSGGAPLS  T RF+N+C   PIGQGYGLTE+C  GT +EV D + 
Sbjct:   426 KKVKALLGGNVRMMLSGGAPLSPQTHRFMNVCFCCPIGQGYGLTESCGAGTVTEVTDYTT 485

Query:   472 GRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDD 531
             GRVGAPL C  IKL DW EGGY  +D P PRGEIVI G N+++GYFKNEEKT E Y VD+
Sbjct:   486 GRVGAPLICCEIKLKDWQEGGYTINDKPNPRGEIVIGGQNISMGYFKNEEKTAEDYSVDE 545

Query:   532 KGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHA 591
              G RWF TGD+G+ H DGCL+IIDRKKD+VKLQ GEYVSLGKVEAAL   P +DNI   A
Sbjct:   546 NGQRWFCTGDIGEFHPDGCLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPLIDNICAFA 605

Query:   592 DPFHSYCVALVVASQPAVEEWAAKQGIVG 620
                 SY ++ VV +Q  +   A ++G+ G
Sbjct:   606 KSDQSYVISFVVPNQKRLTLLAQQKGVEG 634

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007584 "response to nutrient" evidence=IEA

GO:0015908 "fatty acid transport" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0060136 "embryonic process involved in female pregnancy" evidence=IEA

GO:0060996 "dendritic spine development" evidence=IEA

GO:0070672 "response to interleukin-15" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IDA

GO:0047676 "arachidonate-CoA ligase activity" evidence=IDA

GO:0032307 "negative regulation of prostaglandin secretion" evidence=IDA

GO:0008610 "lipid biosynthetic process" evidence=IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0030307 "positive regulation of cell growth" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0019432 "triglyceride biosynthetic process" evidence=TAS

GO:0035338 "long-chain fatty-acyl-CoA biosynthetic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA

UNIPROTKB|F1SR72 ACSL3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1430 (508.4 bits), Expect = 2.6e-158, Sum P(2) = 2.6e-158
 Identities = 300/627 (47%), Positives = 400/627 (63%)

Query:     1 MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVD-VGGEPGHALRNCR-FTSLVSTSWEGIS 58
             +S Y +   +P  F   L  S++EK   I    V  +P  A R+      L S  + G  
Sbjct:    30 ISLYTILTYIPYYF---LSESRQEKSNRIKAKPVNSKPESAYRSVNSLDGLASVLYPGCD 86

Query:    59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
             TL ++F  +  +  DK LLGTR++++ E EV  NG+ F+K+ LG Y WL+Y + F    N
Sbjct:    87 TLDKVFMHAKNKFKDKSLLGTREVLNEEDEVQPNGKIFKKVILGNYNWLSYEEVFVRASN 146

Query:   119 FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETE 178
             F +GL  LG K +  +AIF +TRAEW +A Q CF  N  +VT+YA+LG  A+ + LNETE
Sbjct:   147 FGNGLQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHGLNETE 206

Query:   179 VTTVICGSKEL--KKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQIL 236
             VT +I  SKEL   KL D+   +  ++H+I +D   P A S   +     + + A VQ L
Sbjct:   207 VTNIIT-SKELLQTKLKDIVSLVPRLRHIITVDGK-PPAWSEFPKGVI--VHTMAAVQAL 262

Query:   237 GRENPVD---ADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKD 293
             G +  V+      P+  D+AVIMYTSGSTGLPKGVM++H N++A ++ +   +P+LG KD
Sbjct:   263 GAKASVENKPQSKPMPLDIAVIMYTSGSTGLPKGVMISHSNIIAGITGMAERIPELGEKD 322

Query:   294 VYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMAS 353
             VY+ YLPLAHVLEL AE +    G  IGY +P TL D SSKIKKG++GDAS+L+PT+MA+
Sbjct:   323 VYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDASMLKPTLMAA 382

Query:   354 VPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSK 413
             VP I+DR+   V  KV+      + LF LAY  ++  I+       G    L +  +F K
Sbjct:   383 VPEIMDRIYKNVMNKVNEMSSFQRNLFILAYNYKMEQISK------GCSTPLCDRFIFRK 436

Query:   414 VRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGR 473
             VR++LGG  R +L GGAPLSA TQRF+NIC   P+GQGYGLTE+   GT +EV D + GR
Sbjct:   437 VRSLLGGNTRLLLCGGAPLSAATQRFMNICFCCPVGQGYGLTESSGAGTITEVWDYNTGR 496

Query:   474 VGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKG 533
             VGAPL C  IKL +W EGGY  +D P PRGEI+I G NVT+GY+KNE KTK  +  D+ G
Sbjct:   497 VGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAKTKADFFEDENG 556

Query:   534 MRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADP 593
              RW  TGD+G+   DGCL+IIDRKKD+VKLQ GEYVSLGKVEAAL   P +DNI  +A+ 
Sbjct:   557 QRWLCTGDIGEFDPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLPLIDNICAYANS 616

Query:   594 FHSYCVALVVASQPAVEEWAAKQGIVG 620
             +HSY +  VV +Q  + E A K+G+ G
Sbjct:   617 YHSYVIGFVVPNQKELTELARKKGLTG 643

GO:2001247 "positive regulation of phosphatidylcholine biosynthetic process" evidence=IEA

GO:0051047 "positive regulation of secretion" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0042998 "positive regulation of Golgi to plasma membrane protein transport" evidence=IEA

GO:0034379 "very-low-density lipoprotein particle assembly" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|F1PEH9 ACSL4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1413 (502.5 bits), Expect = 7.9e-157, Sum P(2) = 7.9e-157
 Identities = 293/590 (49%), Positives = 385/590 (65%)

Query:    36 EPGHALRNC-RFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGR 94
             +PG   R+   F SL      G  TL +LF+ +  + G K  LGTR+++S E E+  NG+
Sbjct:    13 KPGSPYRSVTHFDSLAVIDIPGADTLDKLFDHAVSKFGKKDSLGTREILSEENEMQPNGK 72

Query:    95 SFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRR 154
              F+KL LG Y+W++Y +    + NF SGL  LG K +  +AIF +TRAEW +A Q CF+ 
Sbjct:    73 VFKKLILGSYKWMSYLEVNCRVNNFGSGLTALGLKPKNTIAIFCETRAEWMIAAQTCFKY 132

Query:   155 NVTVVTIYASLGEEALCYSLNETEVTTVICGSKELK-KLVDLSGQLDTVKHVICMDANIP 213
             N  +VT+YA+LG+EA+ + LNE+E T +I   + L+ KL      ++ VKH+I +D N  
Sbjct:   133 NFPLVTLYATLGKEAVVHGLNESEATYLITSVELLESKLKTALLDINCVKHIIYVD-N-- 189

Query:   214 SAVSSVEQSGRWKITSFADVQILGR--EN-PVDADYPVSADVAVIMYTSGSTGLPKGVMM 270
               ++ VE    ++I S   V+ LG   EN  V  + P  +D+A++MYTSGSTG PKGVMM
Sbjct:   190 KTINKVEYPEGFEIHSMQSVEELGSKPENLSVPPNRPTPSDMAIVMYTSGSTGRPKGVMM 249

Query:   271 THGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTD 330
              H N++A ++     +P LG KD Y+ YLPLAHVLEL AE      G  IGY +PLTL+D
Sbjct:   250 HHSNLIAGMTGQCERIPGLGPKDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSD 309

Query:   331 TSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSA 390
              SSKIKKG++GD +VL+PT+MA+VP I+DR+   V  KV     + K LF L Y  +L  
Sbjct:   310 QSSKIKKGSKGDCTVLKPTLMAAVPEIMDRIYKNVMSKVQEMNYIQKTLFKLGYDYKLEQ 369

Query:   391 INGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQ 450
             I        G +  L NLL+F KV+A+LGG +R +LSGGAPLS  T RF+N+C   P+GQ
Sbjct:   370 IKK------GYDAPLCNLLLFKKVKALLGGNVRMMLSGGAPLSPQTHRFMNVCFCCPVGQ 423

Query:   451 GYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP 510
             GYGLTE+C  GT +EV D + GRVGAPL C  IKL DW EGGY   D P PRGEIVI G 
Sbjct:   424 GYGLTESCGAGTVTEVTDYTTGRVGAPLICCEIKLKDWQEGGYTIHDKPNPRGEIVIGGQ 483

Query:   511 NVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVS 570
             N+++GYFKNEEKT E Y VD+ G RWF TGD+G+ H DGCL+IIDRKKD+VKLQ GEYVS
Sbjct:   484 NISMGYFKNEEKTAEDYSVDENGQRWFCTGDIGEFHPDGCLQIIDRKKDLVKLQAGEYVS 543

Query:   571 LGKVEAALIVSPYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQGIVG 620
             LGKVEAAL   P +DNI   A    SY ++ VV +Q  +   A ++G+ G
Sbjct:   544 LGKVEAALKNCPLIDNICAFAKSDQSYVISFVVPNQKRLTLLAQQKGVEG 593

GO:0060136 "embryonic process involved in female pregnancy" evidence=IEA

GO:0047676 "arachidonate-CoA ligase activity" evidence=IEA

GO:0032307 "negative regulation of prostaglandin secretion" evidence=IEA

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

UNIPROTKB|F1P451 ACSL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1417 (503.9 bits), Expect = 1.6e-156, Sum P(2) = 1.6e-156
 Identities = 295/612 (48%), Positives = 402/612 (65%)

Query:    18 LRNSKKEKKRGIPVDVGGEPGHALRNCR-FTSLVSTSWEGISTLAELFEQSCKEHGDKYL 76
             +  SK+ K R  PV+    PG A R+      L S  + G  TL ++F+ +  ++ DK L
Sbjct:    45 IAKSKQVKAR--PVN--NRPGGAYRSVNSLHCLASVLYPGCDTLDKVFKYAKTKYKDKKL 100

Query:    77 LGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136
             LGTR+++  E E+  +G+ F+K+ LG+Y WL+Y   +    NF +GLA LG + +  +AI
Sbjct:   101 LGTREILKEEDEIQPSGKVFKKVILGKYTWLSYEDVYIKAVNFGNGLAVLGQQPKTNIAI 160

Query:   137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELK--KLVD 194
             F +TRAEW +A Q CF  N  +VT+YA+LG  A+ + LNETEVTT+I  SKEL   KL +
Sbjct:   161 FCETRAEWMIAAQACFMCNYQLVTLYATLGGAAIVHGLNETEVTTIIT-SKELMQTKLKE 219

Query:   195 LSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRE----NPVDADYPVSA 250
             +  Q+  ++H+I +D   P+  S   +     + + A VQ +G +    N   A  PV +
Sbjct:   220 IVSQIPRLRHIITVDGK-PTTWSEFPKGVI--VHTMASVQAMGAKADSGNKQQAR-PVPS 275

Query:   251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAE 310
             D+AVIMYTSGSTG+PKGVM++H N++A ++ +   +P+LG KD+Y+ YLPLAHVLEL AE
Sbjct:   276 DIAVIMYTSGSTGIPKGVMISHCNIIAGITGMAERIPNLGEKDIYIGYLPLAHVLELSAE 335

Query:   311 NLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD 370
              +    G  IGY +P TL D SSKIKKG++GD + L+PT+MA+VP I+DR+   V  KV+
Sbjct:   336 LVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDVTTLKPTLMAAVPEIMDRIYKNVMNKVN 395

Query:   371 AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGA 430
                   + LF LAY  ++  I+       G    L + L+F KVR +LGG+IR +L GGA
Sbjct:   396 EMTSFQRNLFILAYNYKMEQISK------GYTTPLCDSLIFRKVRMLLGGKIRILLCGGA 449

Query:   431 PLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPE 490
             PLSA TQRF+NIC   P+GQGYGLTE+   GT +EV D + GRVGAPL C  IKL++W E
Sbjct:   450 PLSAATQRFMNICFCCPVGQGYGLTESAGAGTITEVWDYTTGRVGAPLVCCEIKLLNWEE 509

Query:   491 GGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGC 550
             GGY  +D P PRGEI+I G NVTVGY+KNE +T++ + +D+ G RW +TGD+G+ H DGC
Sbjct:   510 GGYYNTDKPYPRGEILIGGQNVTVGYYKNEGRTRKDFTIDENGQRWLHTGDIGEFHQDGC 569

Query:   551 LEII--DRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVALVVASQPA 608
             L+II  DRKKD+VKLQ GEYVSLGKVEAAL   P VDNI  +A  FHSY +  VV +Q  
Sbjct:   570 LKIIAIDRKKDLVKLQAGEYVSLGKVEAALKNLPLVDNICAYASSFHSYVIGFVVPNQKE 629

Query:   609 VEEWAAKQGIVG 620
             + E A K+G  G
Sbjct:   630 LAELARKKGFKG 641

GO:0003824 "catalytic activity" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0034379 "very-low-density lipoprotein particle assembly" evidence=IEA

GO:0042998 "positive regulation of Golgi to plasma membrane protein transport" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0051047 "positive regulation of secretion" evidence=IEA

GO:2001247 "positive regulation of phosphatidylcholine biosynthetic process" evidence=IEA

UNIPROTKB|J9P9G0 ACSL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1412 (502.1 bits), Expect = 2.1e-156, Sum P(2) = 2.1e-156
 Identities = 297/626 (47%), Positives = 394/626 (62%)

Query:     1 MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCR-FTSLVSTSWEGIST 59
             +S Y V   +P  F    R  K  K +  PV+   +P  A R+      L S  + G  T
Sbjct:    30 ISLYTVFTYIPYYFLFETRQEKSNKIKAKPVN--SKPESAYRSINSLDGLASVLYPGCDT 87

Query:    60 LAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNF 119
             L ++F  +  +  DK LLGTR+++S + EV  NG+ F+K+ LG Y WL+Y   F    NF
Sbjct:    88 LDKVFMYAKNKFKDKKLLGTREILSEDDEVQPNGKIFKKVILGNYNWLSYEDVFVRAFNF 147

Query:   120 ASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179
              +GL  LG K +  +AIF +TRAEW +A Q CF  N  +VT+YA+LG  A+ + LNETEV
Sbjct:   148 GNGLQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHGLNETEV 207

Query:   180 TTVICGSKEL--KKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILG 237
             T +I  SKEL   KL D+   +  ++H+I +D   P+   S    G   + + A VQ LG
Sbjct:   208 TNIIT-SKELLQTKLKDIVSLVPRLRHIITVDGKPPTW--SEFPKGVI-VHTMAAVQALG 263

Query:   238 RENPVD---ADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV 294
              +   +      P+  D+AVIMYTSGSTGLPKGVM++H N++A ++ +   +P LG  DV
Sbjct:   264 AKASTENKPQSKPMPLDIAVIMYTSGSTGLPKGVMISHSNIIAGITGMAERIPGLGEGDV 323

Query:   295 YLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASV 354
             Y+ YLPLAHVLEL AE +    G  IGY +P TL D SSKIKKG++GD ++L+PT+MA+V
Sbjct:   324 YIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTTMLKPTLMAAV 383

Query:   355 PAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKV 414
             P I+DR+   V  KV+      + LF LAY  ++  I+       G    L +  +F KV
Sbjct:   384 PEIMDRIYKNVMNKVNEMSSFQRNLFVLAYNYKMEQISR------GHGTPLCDRFIFRKV 437

Query:   415 RAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRV 474
             R +LGG IR +L GGAPLSA TQRF+NIC   P+GQGYGLTE+C  GT +EV D + GRV
Sbjct:   438 RGLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESCGAGTITEVWDYNTGRV 497

Query:   475 GAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGM 534
             GAPL C  IKL +W EGGY  +D P PRGEI+I G NVT+GY+KNE KTK  +  D+ G 
Sbjct:   498 GAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTIGYYKNEAKTKADFFEDENGQ 557

Query:   535 RWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPF 594
             RW  TGD+G+   DGCL+IIDRKKD+VKLQ GEYVSLGKVEAAL     VDNI  +A+ +
Sbjct:   558 RWLCTGDIGEFDPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLSLVDNICAYANSY 617

Query:   595 HSYCVALVVASQPAVEEWAAKQGIVG 620
             HSY +  +V +Q  + E A K+G+ G
Sbjct:   618 HSYVIGFIVPNQKELTELARKKGLQG 643

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|O95573 ACSL3 "Long-chain-fatty-acid--CoA ligase 3" [Homo sapiens (taxid:9606)]

 Score = 1412 (502.1 bits), Expect = 2.1e-156, Sum P(2) = 2.1e-156
 Identities = 296/626 (47%), Positives = 400/626 (63%)

Query:     1 MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCR-FTSLVSTSWEGIST 59
             +S Y +   +P  F    R  K  + +  PV+   +P  A R+      L S  + G  T
Sbjct:    30 ISLYTILTYIPFYFFSESRQEKSNRIKAKPVN--SKPDSAYRSVNSLDGLASVLYPGCDT 87

Query:    60 LAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNF 119
             L ++F  +  +  +K LLGTR++++ E EV  NG+ F+K+ LG+Y WL+Y   F    NF
Sbjct:    88 LDKVFTYAKNKFKNKRLLGTREVLNEEDEVQPNGKIFKKVILGQYNWLSYEDVFVRAFNF 147

Query:   120 ASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179
              +GL  LG K +  +AIF +TRAEW +A Q CF  N  +VT+YA+LG  A+ ++LNETEV
Sbjct:   148 GNGLQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHALNETEV 207

Query:   180 TTVICGSKEL--KKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILG 237
             T +I  SKEL   KL D+   +  ++H+I +D   P+   S    G   + + A V+ LG
Sbjct:   208 TNIIT-SKELLQTKLKDIVSLVPRLRHIITVDGKPPTW--SEFPKGII-VHTMAAVEALG 263

Query:   238 RENPVDAD---YPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV 294
              +  ++      P+ +D+AVIMYTSGSTGLPKGVM++H N++A ++ +   +P+LG +DV
Sbjct:   264 AKASMENQPHSKPLPSDIAVIMYTSGSTGLPKGVMISHSNIIAGITGMAERIPELGEEDV 323

Query:   295 YLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASV 354
             Y+ YLPLAHVLEL AE +    G  IGY +P TL D SSKIKKG++GD S+L+PT+MA+V
Sbjct:   324 YIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSMLKPTLMAAV 383

Query:   355 PAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKV 414
             P I+DR+   V  KV       + LF LAY  ++  I+       G    L +  VF KV
Sbjct:   384 PEIMDRIYKNVMNKVSEMSSFQRNLFILAYNYKMEQISK------GRNTPLCDSFVFRKV 437

Query:   415 RAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRV 474
             R++LGG IR +L GGAPLSA TQRF+NIC   P+GQGYGLTE+   GT SEV D + GRV
Sbjct:   438 RSLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESAGAGTISEVWDYNTGRV 497

Query:   475 GAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGM 534
             GAPL C  IKL +W EGGY  +D P PRGEI+I G +VT+GY+KNE KTK  +  D+ G 
Sbjct:   498 GAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQSVTMGYYKNEAKTKADFFEDENGQ 557

Query:   535 RWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPF 594
             RW  TGD+G+   DGCL+IIDRKKD+VKLQ GEYVSLGKVEAAL   P VDNI  +A+ +
Sbjct:   558 RWLCTGDIGEFEPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLPLVDNICAYANSY 617

Query:   595 HSYCVALVVASQPAVEEWAAKQGIVG 620
             HSY +  VV +Q  + E A K+G+ G
Sbjct:   618 HSYVIGFVVPNQKELTELARKKGLKG 643

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0007584 "response to nutrient" evidence=IEA

GO:0014070 "response to organic cyclic compound" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0034379 "very-low-density lipoprotein particle assembly" evidence=IMP

GO:2001247 "positive regulation of phosphatidylcholine biosynthetic process" evidence=IMP

GO:0044539 "long-chain fatty acid import" evidence=IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IMP

GO:0051047 "positive regulation of secretion" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0042998 "positive regulation of Golgi to plasma membrane protein transport" evidence=IMP

GO:0019901 "protein kinase binding" evidence=IPI

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0019432 "triglyceride biosynthetic process" evidence=TAS

GO:0035338 "long-chain fatty-acyl-CoA biosynthetic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|F1MEX9 ACSL3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 1410 (501.4 bits), Expect = 3.4e-156, Sum P(2) = 3.4e-156
 Identities = 294/626 (46%), Positives = 396/626 (63%)

Query:     1 MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCR-FTSLVSTSWEGIST 59
             +S Y +   +P  F    R  K  + +  PV+   +P  A R+      L S  + G  T
Sbjct:    30 ISLYTILTYIPYYFLSESRQEKSNRTKAKPVN--SKPDSAYRSVNSLDGLASVLYPGCDT 87

Query:    60 LAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNF 119
             L ++F  +  +  DK LLGTR++++ E EV  NG+ F+K+ LG Y WL+Y   F    NF
Sbjct:    88 LDKVFMHAKNKFKDKRLLGTREILNEEDEVQPNGKVFKKVILGSYNWLSYEDVFVRAFNF 147

Query:   120 ASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179
              +GL  LG K +  +AIF +TRAEW VA Q CF  N  +VT+YA+LG  A+ + LNETEV
Sbjct:   148 GNGLQMLGQKPKTNIAIFCETRAEWMVAAQACFMYNFQLVTLYATLGGPAIVHGLNETEV 207

Query:   180 TTVICGSKEL--KKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILG 237
             T +I  SKEL   KL D+   +  ++H+I +D   P+   S    G   + + A V+ LG
Sbjct:   208 TNIIT-SKELLQTKLKDIVSLVPRLRHIITVDGKPPTW--SEFPKGVI-VHTMAAVRALG 263

Query:   238 RENPVD---ADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV 294
              +  ++      P  +D+AVIMYTSGSTG+PKGVM++H N++A ++ +   +P+LG KDV
Sbjct:   264 AKASMENKPLSKPAPSDIAVIMYTSGSTGIPKGVMISHSNIIAGITGMAERIPELGEKDV 323

Query:   295 YLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASV 354
             Y+ YLPLAHVLEL AE +    G  IGY +P TL D   KIKKG++GD S+L+PT+MA+V
Sbjct:   324 YIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQVFKIKKGSKGDTSMLKPTLMAAV 383

Query:   355 PAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKV 414
             P I+DR+   V  KV+      + LF LAY  ++  I+       G    L +  +F KV
Sbjct:   384 PEIMDRIYKNVMNKVNEMSSFQRNLFILAYNYKMEQISK------GHSTPLCDSFIFRKV 437

Query:   415 RAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRV 474
             R +LGG IR +L GGAPLSA TQRF+NIC   P+GQGYGLTE+C  GT +EV D + GRV
Sbjct:   438 RGLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESCGAGTITEVWDYNTGRV 497

Query:   475 GAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGM 534
             GAPL C  IKL +W EGGY  +D P PRGEI+I G NVT+GY+KNE KTK  +  D+ G 
Sbjct:   498 GAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAKTKADFFEDENGQ 557

Query:   535 RWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPF 594
             RW  TGD+G+   DGCL+IIDRKKD+VKLQ GEYVSLGKVEAAL   P +DNI  +A+ +
Sbjct:   558 RWLCTGDIGEFDPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLPLIDNICAYANSY 617

Query:   595 HSYCVALVVASQPAVEEWAAKQGIVG 620
             HSY +  VV +Q  + E A ++G+ G
Sbjct:   618 HSYVIGFVVPNQKELTELARRKGLHG 643

GO:2001247 "positive regulation of phosphatidylcholine biosynthetic process" evidence=IEA

GO:0051047 "positive regulation of secretion" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0042998 "positive regulation of Golgi to plasma membrane protein transport" evidence=IEA

GO:0034379 "very-low-density lipoprotein particle assembly" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CAP8	LACS9_ARATH	6, ., 2, ., 1, ., 3	0.7453	0.9910	0.9638	yes	no
Q9QUJ7	ACSL4_MOUSE	6, ., 2, ., 1, ., 3	0.4586	0.9806	0.9268	yes	no
Q63151	ACSL3_RAT	6, ., 2, ., 1, ., 3	0.4593	0.9791	0.9138	yes	no
O60488	ACSL4_HUMAN	6, ., 2, ., 1, ., 3	0.4611	0.9732	0.9198	yes	no
P30624	LCF1_YEAST	6, ., 2, ., 1, ., 3	0.3266	0.9002	0.8642	yes	no
Q1ZXQ4	FCSB_DICDI	6, ., 2, ., 1, ., 3	0.3318	0.9404	0.9390	yes	no
O60135	LCF1_SCHPO	6, ., 2, ., 1, ., 3	0.3348	0.9077	0.9023	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.983
3rd Layer	6.2.1.3	0.979

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00015387001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (697 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00018681001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (691 aa)						•			0.903
	GSVIVG00038876001	SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (448 aa)						•			0.899
	GSVIVG00033040001	SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (428 aa)						•			0.899
	GSVIVG00009919001	SubName- Full=Chromosome undetermined scaffold_1671, whole genome shotgun sequence; Flags- Frag [...] (148 aa)						•			0.899
	GSVIVG00009515001	SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (398 aa)						•			0.899
	GSVIVG00025319001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (830 aa)						•			0.800
	GSVIVG00019100001	SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (338 aa)						•			0.800
	GSVIVG00009528001	SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (256 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	672
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	0.0
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	0.0
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-156
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	1e-152
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	1e-144
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	1e-115
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	1e-106
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	1e-101
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	2e-95
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	9e-91
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	1e-73
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	4e-71
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	2e-50
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	2e-50
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	5e-48
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	2e-47
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	3e-43
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	5e-42
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	3e-41
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	8e-39
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	6e-38
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	9e-37
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	5e-35
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	2e-33
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	3e-33
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	1e-32
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	2e-32
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	1e-31
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	1e-30
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	1e-29
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	3e-29
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	8e-29
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	4e-28
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	5e-27
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	9e-27
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	1e-26
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	2e-25
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	3e-25
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	2e-24
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	3e-24
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	4e-24
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	5e-24
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	7e-24
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	9e-24
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	6e-23
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	8e-23
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	2e-22
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	1e-21
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	1e-21
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	1e-21
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	3e-21
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	3e-21
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	6e-21
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	1e-20
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	2e-20
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	2e-20
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	3e-19
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	4e-19
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	6e-19
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	9e-19
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	1e-18
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	1e-18
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	2e-18
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	5e-18
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	2e-17
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	4e-17
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	7e-17
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	9e-17
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	1e-16
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	1e-16
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	2e-16
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	3e-16
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	6e-16
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	6e-16
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	7e-16
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	8e-16
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	8e-16
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	1e-15
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	1e-15
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	1e-15
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-15
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	7e-15
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	7e-15
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	8e-15
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	1e-14
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	3e-14
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	4e-14
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	4e-14
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	5e-14
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	5e-14
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	1e-13
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	2e-13
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	2e-13
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	2e-13
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	3e-13
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	4e-13
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	7e-13
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	9e-13
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	1e-12
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	1e-12
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	2e-12
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	2e-12
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	2e-12
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	3e-12
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	4e-12
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	5e-12
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	6e-12
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	1e-11
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	1e-11
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	2e-11
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	2e-11
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	3e-11
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	3e-11
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	4e-11
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	6e-11
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	8e-11
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	9e-11
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	1e-10
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	1e-10
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	1e-10
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	2e-10
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	2e-10
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	2e-10
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	5e-10
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	7e-10
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	8e-10
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	9e-10
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	9e-10
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	1e-09
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	1e-09
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	1e-09
PTZ00297	1452	PTZ00297, PTZ00297, pantothenate kinase; Provision	1e-09
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	1e-09
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	1e-09
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	1e-09
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	1e-09
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	2e-09
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	2e-09
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	3e-09
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	9e-09
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	1e-08
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	1e-08
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	1e-08
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	2e-08
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	2e-08
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	3e-08
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	3e-08
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	4e-08
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	4e-08
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	6e-08
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	6e-08
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	6e-08
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	6e-08
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	7e-08
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	8e-08
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	1e-07
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	1e-07
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	2e-07
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-07
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	2e-07
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	2e-07
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	2e-07
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	2e-07
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	2e-07
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	3e-07
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	3e-07
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	3e-07
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	3e-07
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	4e-07
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	4e-07
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	5e-07
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	5e-07
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	5e-07
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	6e-07
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	9e-07
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-06
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	1e-06
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	1e-06
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	2e-06
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	2e-06
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	3e-06
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	3e-06
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	3e-06
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	3e-06
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	4e-06
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	5e-06
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	9e-06
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	1e-05
cd05939	474	cd05939, hsFATP4_like, Fatty acid transport protei	1e-05
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	2e-05
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	2e-05
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	4e-05
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	5e-05
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	5e-05
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	5e-05
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	5e-05
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	6e-05
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	6e-05
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	7e-05
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	9e-05
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-04
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-04
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	1e-04
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	2e-04
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	2e-04
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	2e-04
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	2e-04
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	3e-04
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	3e-04
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	3e-04
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	4e-04
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	4e-04
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	4e-04
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	5e-04
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	5e-04
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	6e-04
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	7e-04
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	0.001
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	0.001
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	0.001
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	0.001
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	0.002
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	0.002
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	0.002
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	0.002
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	0.002
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	0.003
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	0.003
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	0.003
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	0.004

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 1345 bits (3483), Expect = 0.0
 Identities = 520/696 (74%), Positives = 588/696 (84%), Gaps = 24/696 (3%)

Query: 1   MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTL 60
           M AYIVGVLVPL+ TLLLR SKK KKRG+PVDVGGEPG+A+RN RF  LV T WEG +TL
Sbjct: 1   MGAYIVGVLVPLLLTLLLRGSKKGKKRGVPVDVGGEPGYAIRNARFPELVETPWEGATTL 60

Query: 61  AELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFA 120
           A LFEQSCK++ DK LLGTR+LISRE E + +GR FEKLHLGEYEW+TYGQ FE +CNFA
Sbjct: 61  AALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFA 120

Query: 121 SGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVT 180
           SGL  LGH KEERVAIFADTRAEW +ALQGCFR+N+TVVTIYASLGEEALC+SLNETEVT
Sbjct: 121 SGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVT 180

Query: 181 TVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGREN 240
           TVIC SK+LKKL+D+S QL+TVK VI MD     + SS+  S  W ++SF++V+ LG+EN
Sbjct: 181 TVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKEN 240

Query: 241 PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLP 300
           PVD D P   D+AVIMYTSGSTGLPKGVMMTHGN++ATV+ VMT+VP LG  DVYLAYLP
Sbjct: 241 PVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLP 300

Query: 301 LAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR 360
           LAH+LEL AE+++A VG+AIGYG+PLTLTDTS+KIKKGT+GDAS L+PT+M +VPAILDR
Sbjct: 301 LAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDR 360

Query: 361 VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGG 420
           VRDGVRKKVDAKGGL+KKLFD+AY RRL+AI GSWFGAWGLEKLLW+ LVF K+RA+LGG
Sbjct: 361 VRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGG 420

Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPC 480
           RIRF+LSGGAPLS DTQRFINICLGAPIGQGYGLTETCAG TFSE DD+SVGRVG PLPC
Sbjct: 421 RIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVGRVGPPLPC 480

Query: 481 SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTG 540
            ++KL+ W EGGYL SD PMPRGEIVI GP+VT+GYFKN+EKT EVYKVD++GMRWFYTG
Sbjct: 481 CYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTG 540

Query: 541 DVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVA 600
           D+GQ H DGCLEIIDRKKDIVKLQHGEYVSLGKVEAAL VSPYVDNIM+HADPFHSYCVA
Sbjct: 541 DIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFHSYCVA 600

Query: 601 LVVASQPAVEEWAAKQGI------------------------VGKNARLDKFEIPAKIKL 636
           LVV SQ A+E+WA K GI                          K ARL+KFEIPAKIKL
Sbjct: 601 LVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKL 660

Query: 637 LSYPWTSEAGLVTAALKIKREAIRKAFADDLARLYE 672
           L  PWT E+GLVTAALK+KRE IRK F DDL +LYE
Sbjct: 661 LPEPWTPESGLVTAALKLKREQIRKKFKDDLKKLYE 696

Length = 696

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  724 bits (1872), Expect = 0.0
 Identities = 252/595 (42%), Positives = 343/595 (57%), Gaps = 81/595 (13%)

Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
           G YEW++Y +  E   N  SGL  LG K  +++ IFA+ R EW +  Q CF +++ +V +
Sbjct: 1   GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60

Query: 162 YASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQ 221
           Y +LGEEA+ Y LNETE++ V C +                                   
Sbjct: 61  YDTLGEEAIEYILNETEISIVFCDA----------------------------------- 85

Query: 222 SGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281
               K+ SF +++ LG++N V    P   D+A IMYTSG+TG PKGVM+THGN++A V+ 
Sbjct: 86  ---VKVYSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAG 142

Query: 282 VMTIVPD-LGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQ 340
           +  IVP+ +G  DVY++YLPLAH+ E V EN+   +G  IGY +  T         +G +
Sbjct: 143 INKIVPEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDT---------RGLK 193

Query: 341 GDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWG 400
           GD   L+PTV   VP +LDR+  G+  KV+AKGGL + LF+ AY  +L+A+        G
Sbjct: 194 GDIKELKPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRGH----G 249

Query: 401 LEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAG 460
               LW+ LVF K++A LGGR+R +LSGGAPLS DTQ F+ + LG P+ QGYGLTETCAG
Sbjct: 250 YASPLWDKLVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAG 309

Query: 461 GTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNE 520
           GT S+  D++ G VG PLPC  IKL+D PE GY   D P PRGEI I GPNV  GY+KN 
Sbjct: 310 GTLSDPGDTTTGHVGPPLPCCEIKLVDVPEMGYFAKDDP-PRGEICIRGPNVFKGYYKNP 368

Query: 521 EKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIV 580
           EKT E +  D     WF+TGD+G+   DG L+IIDRKK++ KL  GEYV+L K+E     
Sbjct: 369 EKTAEAFDED----GWFHTGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKS 424

Query: 581 SPYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQGI---------------------- 618
           SP VD I ++ D   S+ VA+VV  +  +E+WAA+ G                       
Sbjct: 425 SPLVDQICVYGDSLKSFLVAIVVPDEDVLEKWAAENGGGGGDFEELCNNKKLKKAILKDL 484

Query: 619 --VGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLY 671
             +GK   L  FEI   I L   P+T E GL+T   K+KR  ++K +  ++  +Y
Sbjct: 485 NEIGKENGLKGFEIVKAIHLTPEPFTPENGLLTPTFKLKRPQLKKRYKKEIDEMY 539

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  464 bits (1195), Expect = e-156
 Identities = 211/657 (32%), Positives = 304/657 (46%), Gaps = 85/657 (12%)

Query: 49  LVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLT 108
            +S +WE +        +   E                     +G +     LG +E +T
Sbjct: 4   RISMAWEDV-AEIHTLPKRLAERVKDR---------------PDGVALMYKELGGWEAIT 47

Query: 109 YGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEE 168
           Y + +E +   ASGL  LG    +RVAIFA  R EW +A           V IY++   E
Sbjct: 48  YRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYSTSTPE 107

Query: 169 ALCYSLNETEVTTVICGSKELKKLV-DLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKI 227
            L Y LNE+E   +   ++EL  LV  +      V  +I +   +  AV +        +
Sbjct: 108 QLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAK----ALVL 163

Query: 228 TSFADVQI-----LGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV 282
             F D  I                P   D+A I+YTSG+TG PKGVM+TH N+LA V+ +
Sbjct: 164 EVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGI 223

Query: 283 MTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGD 342
             ++P +G  D  L++LPLAH+ E   E  +A       YG    L     +       D
Sbjct: 224 DEVLPPIGPGDRVLSFLPLAHIFERAFEGGLA------LYGGVTVLFKEDPRTLL---ED 274

Query: 343 ASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLF----DLAYARRLSAINGSWFGA 398
              +RPTVM  VP + ++V  G+ +KV     + +KLF     +AY +   A+ G    +
Sbjct: 275 LKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLS 334

Query: 399 WGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETC 458
           W    L+ + LVF K+R  LGGRIR+ LSGGAPLS +   F    LG PI +GYGLTET 
Sbjct: 335 W---LLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRS-LGIPILEGYGLTETS 390

Query: 459 AGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFK 518
           A  + +  D   +G VG PLP   +K+ D               GEI++ GPNV  GY+K
Sbjct: 391 AVVSVNPPDRFVLGTVGKPLPGIEVKIAD--------------DGEILVRGPNVMKGYYK 436

Query: 519 NEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAAL 578
           N E T E     + G  WF TGD+G++  DG L I  RKK+++KL +G+ ++   +E+ L
Sbjct: 437 NPEATAEA--FTEDG--WFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKL 492

Query: 579 IVSPYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQGIVGK----------------- 621
             SP ++ I +  D    + VAL+V    A+E+WA     V                   
Sbjct: 493 AKSPLIEQICVVGDD-KKFLVALIVPDFDALEKWAESLNKVISASREELARDPKLLKLIL 551

Query: 622 ------NARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLYE 672
                 N RL  FE   K  LL   +T E G +T  LK+KR  I   + D++  +Y 
Sbjct: 552 PRVNKGNKRLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDEIEAVYS 608

Length = 613

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score =  456 bits (1175), Expect = e-152
 Identities = 236/659 (35%), Positives = 350/659 (53%), Gaps = 75/659 (11%)

Query: 59  TLAELFEQSCKEHGDKYLLGTRQL--ISRETEVADNG--RSFEKLHLGEYEWLTYGQAFE 114
              +  E+ CKE GD+  L  R +  + +E     +G  R+ E  H  E  ++TY + +E
Sbjct: 70  NFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWE 129

Query: 115 TICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSL 174
            I NF  GLA+LG  K   VAI+ +TR EW  ++ G + +++   T+YA+LGE+AL Y+L
Sbjct: 130 RIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYAL 189

Query: 175 NETEVTTVICGSKELKKLVDL--SGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFAD 232
            ETE   ++C  K +  L+ L  SG +     +I +D+ +P++V +       ++ ++ D
Sbjct: 190 RETECKAIVCNGKNVPNLLRLMKSGGMPNTT-IIYLDS-LPASVDTEG----CRLVAWTD 243

Query: 233 VQILGRENPVDADYPVSA---DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL 289
           V   G          +     D+A+IMYTSG+TG PKGVM THG++ A + A+   + DL
Sbjct: 244 VVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDL 303

Query: 290 -GSK---DVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASV 345
            G     + Y +YLPLAH++E    N+    G+ IG+G+P TLTDT ++      GD + 
Sbjct: 304 IGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFGSPRTLTDTFAR----PHGDLTE 359

Query: 346 LRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLL 405
            RP  +  VP I D ++  V  K+   G L +++FD AY  RL A+        G +   
Sbjct: 360 FRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKE------GKDTPY 413

Query: 406 WNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSE 465
           WN  VFS  RA+LGGR+R +LSGG PLSA TQ F+N+  G  + QG+GLTET   G    
Sbjct: 414 WNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQR 472

Query: 466 VDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKE 525
             D     VG  L    +KL+D  E  Y  +D+P PRGEI++ GP +  GY+K EE T+E
Sbjct: 473 TGDLEPNAVGQLLKGVEMKLLDTEE--YKHTDTPEPRGEILLRGPFLFKGYYKQEELTRE 530

Query: 526 VYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVD 585
           V  +D+ G  WF+TGDVG + A+G L II R K + K   GEY++L  +EA      Y  
Sbjct: 531 V--LDEDG--WFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEAL-----YGQ 581

Query: 586 N---------IMMHADPFHSYCVALVVASQPAVEEWAAKQGI------------------ 618
           N         +++H  P  SY  ALV+  +     +A + GI                  
Sbjct: 582 NELVVPNGVCVLVH--PARSYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKAT 639

Query: 619 -----VGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLYE 672
                  + A    FEI   +++LS  WT E G++TAA+K+KR  I + +AD +  L+ 
Sbjct: 640 ESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYADLIKELFA 698

Length = 700

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score =  434 bits (1119), Expect = e-144
 Identities = 219/646 (33%), Positives = 336/646 (52%), Gaps = 70/646 (10%)

Query: 56  GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFET 115
            I TL + F  + +   D   LGTR        +  +G       +GEY+W+TYG+A   
Sbjct: 42  EIGTLHDNFVYAVETFRDYKYLGTR--------IRVDGT------VGEYKWMTYGEAGTA 87

Query: 116 ICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLN 175
                SGL Q G  K   V ++   R EW +    C   +   V +Y +LG +A+ + +N
Sbjct: 88  RTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVN 147

Query: 176 ETEVTTVICGSKELKKLVDLSGQLDTVKHVIC---MDANIPSAVSSVEQSGRWKITSFAD 232
             EV  + C  + L  L+    ++ +V+ ++     D  +PS  S        +I +++ 
Sbjct: 148 HAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGV----EIVTYSK 203

Query: 233 VQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSK 292
           +   GR +P     P   DVA I YTSG+TG PKGV++THGN++A V+   ++       
Sbjct: 204 LLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGS-SLSTKFYPS 262

Query: 293 DVYLAYLPLAHVLELVAENLIAGVGSAIGY--GTPLTLTDTSSKIKKGTQGDASVLRPTV 350
           DV+++YLPLAH+ E V + ++   G A+G+  G  L L D           D + LRPT+
Sbjct: 263 DVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMD-----------DLAALRPTI 311

Query: 351 MASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAY-ARRLSAINGSWFGAWGLEKLLWNLL 409
             SVP + +R+ DG+   V   GGL ++LF+ AY A++ +  NG           +W+ L
Sbjct: 312 FCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSP------MWDRL 365

Query: 410 VFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDS 469
           VF+K++A LGGR+RF+ SG +PLS D   F+ IC G  + +GYG+TET    +  +  D+
Sbjct: 366 VFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEGDN 425

Query: 470 SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529
             G VG+P P   +KL+D PE  Y + D P PRGEI + GP +  GY+K+E +T+EV  +
Sbjct: 426 LSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREV--I 483

Query: 530 DDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMM 589
           D+ G  W +TGD+G     G L+IIDRKK+I KL  GEY++  K+E       +V    +
Sbjct: 484 DEDG--WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFV 541

Query: 590 HADPFHSYCVALVVASQPAVEEWAAKQGI------------------------VGKNARL 625
           + D  +S  VA+VV     ++ WAA +GI                        VG+ A+L
Sbjct: 542 YGDSLNSSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQL 601

Query: 626 DKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLY 671
             FE    + L+  P+T E GL+T   K+KR   +  FA  ++ +Y
Sbjct: 602 RGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAISDMY 647

Length = 651

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  353 bits (908), Expect = e-115
 Identities = 166/580 (28%), Positives = 250/580 (43%), Gaps = 146/580 (25%)

Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
           G ++ +T+ +  E +   A+GL  LG K  +RVAI A+ R EW +A           V I
Sbjct: 1   GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPI 60

Query: 162 YASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQ 221
           Y +   E                   E+  +++ SG     + V   D            
Sbjct: 61  YPTSSPE-------------------EVAYILNDSG----ARVVFVEDK----------- 86

Query: 222 SGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281
                                        D+A ++YTSG+TG PKGVM+TH N+LA  +A
Sbjct: 87  ---------------------------PDDLATLIYTSGTTGNPKGVMLTHRNLLAQAAA 119

Query: 282 VMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQG 341
           ++ ++P L   D  L++LPLAHV E        G    +  G  +   ++   + +  + 
Sbjct: 120 LLEVIP-LSPGDRVLSFLPLAHVFEQR-----LGEYLPLSSGARVNFAESPETLLEDLR- 172

Query: 342 DASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGL 401
               +RPTV  +VP + +++  G+  KV A G L +KLF                     
Sbjct: 173 ---EVRPTVFFAVPRVWEKIYAGIEAKVAAAGPLKRKLFR-------------------- 209

Query: 402 EKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGG 461
                         A+ GGR+RF +SGGAPL  +   F    LG PI +GYGLTET    
Sbjct: 210 -------------WALGGGRLRFAVSGGAPLPPEVLEFFRA-LGIPILEGYGLTETSGVA 255

Query: 462 TFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEE 521
           T +   D  +G VG PLP   +++ +               GEI++ GPNV  GY+KN E
Sbjct: 256 TVNRPGDIRIGTVGKPLPGVEVRIAE--------------DGEILVRGPNVMKGYYKNPE 301

Query: 522 KTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVS 581
            T E    D  G  W +TGD+G++  DG L I DRKKD++    G+ ++   +E AL  S
Sbjct: 302 ATAEALDED--G--WLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKAS 357

Query: 582 PYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQGIVGK-------------------- 621
           PY+   ++  D    Y  AL+V    A+E+WA + G+                       
Sbjct: 358 PYISQAVVVGDD-RPYLTALIVLDPEALEKWAEQHGLPFTTYADLAEDPEVRALIRKEVE 416

Query: 622 --NARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAI 659
             NARL + E   K  LL   ++ E G +T  +K++R  +
Sbjct: 417 EANARLARVEQIKKFVLLPKEFSIEDGELTPTMKLRRRVV 456

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score =  336 bits (862), Expect = e-106
 Identities = 203/654 (31%), Positives = 332/654 (50%), Gaps = 72/654 (11%)

Query: 50  VSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTY 109
           ++T+W+       +F +S +++ D  +LG R+++        +G+      +G Y W TY
Sbjct: 41  ITTAWD-------IFSKSVEKYPDNKMLGWRRIV--------DGK------VGPYMWKTY 79

Query: 110 GQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEA 169
            + +E +    S L   G +   RV I+     +W VA++ C   ++  V +Y +LG  A
Sbjct: 80  KEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGA 139

Query: 170 LCYSLNETEVTTVICGSKELKKLVDLS-GQLDTVKHVICMDANIPSAVSSVEQSGRWKIT 228
           + Y ++  E+  V    K++K+L++        +K ++   +          Q G  K  
Sbjct: 140 VDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIG-VKTY 198

Query: 229 SFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPD 288
           S+ D   +G+ENP + + P   D+  IMYTSG++G PKGV++TH  V   V  V   +  
Sbjct: 199 SWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQ 258

Query: 289 LGSK----DVYLAYLPLAHVLELVAENLIAGVGSAIGY--GTPLTLTDTSSKIKKGTQGD 342
              K    DVYL++LPLAH+L+ + E      G+++GY  G    L D           D
Sbjct: 259 FEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRD-----------D 307

Query: 343 ASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLE 402
              L+PT++A VP + +R+ +G++K +       + +F+  Y  +L+ +N  +       
Sbjct: 308 LMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKA-- 365

Query: 403 KLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGT 462
             + + L F KV+A LGGR+R ++SGGAPLS + + F+ +   A + QGYGLTET    T
Sbjct: 366 SPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTT 425

Query: 463 FSEVDDSS-VGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEE 521
               D+   +G VGAP   + ++L + PE GY     P PRGEI + G  +  GY+KN E
Sbjct: 426 LGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEP-PRGEICVRGKCLFSGYYKNPE 484

Query: 522 KTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVS 581
            T+EV K    G  WF+TGD+G++  +G L+IIDRKK+++KL  GEYV+L  +E     +
Sbjct: 485 LTEEVMK---DG--WFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQN 539

Query: 582 PYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQGIVG--------------------- 620
           P V++I ++ D F S  VA+VV ++    +WA   G  G                     
Sbjct: 540 PIVEDIWVYGDSFKSMLVAVVVPNEENTNKWAKDNGFTGSFEELCSLPELKEHILSELKS 599

Query: 621 --KNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLYE 672
             +  +L  FE    + L + P+  E  LVTA LK +R  + K +  ++  +Y 
Sbjct: 600 TAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEIDEMYR 653

Length = 660

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score =  322 bits (828), Expect = e-101
 Identities = 201/663 (30%), Positives = 322/663 (48%), Gaps = 96/663 (14%)

Query: 55  EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFE 114
             I +  + F  + K++ +  +LG RQ+   +               G Y WLTY + ++
Sbjct: 40  ADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKV--------------GPYVWLTYKEVYD 85

Query: 115 TICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSL 174
                 S +   G    +R  I+     EW +A++ C  + +T V +Y +LG  A+ + +
Sbjct: 86  AAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFII 145

Query: 175 NETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK-------- 226
           N  EV+       ++  +      L  +    C  +N+ + VS  + S   K        
Sbjct: 146 NHAEVSIAFVQESKISSI------LSCLPK--C-SSNLKTIVSFGDVSSEQKEEAEELGV 196

Query: 227 -ITSFADVQILGRENPVDADYPVS--ADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV- 282
              S+ +  ++G    +D + P     D+  IMYTSG+TG PKGV++T+  ++A V +  
Sbjct: 197 SCFSWEEFSLMGS---LDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTD 253

Query: 283 -MTIVPD--LGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY--GTPLTLTDTSSKIKK 337
            +  V D     +D Y +YLPLAHV + V E      G++IG+  G    L +       
Sbjct: 254 HLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLME------- 306

Query: 338 GTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFG 397
               D   L+PT+   VP + DR+  G+ +K+ + G L KKLFD AY  +L  +      
Sbjct: 307 ----DVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRK---- 358

Query: 398 AWGLEKL----LWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYG 453
             GL++       + LVF K++  LGGR+R +LSG APL    + F+ +   + + QGYG
Sbjct: 359 --GLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYG 416

Query: 454 LTETCAGGTFSEVDD--SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPN 511
           LTE+C GG F+ + +  S VG VG P+     +L   PE GY  + S +PRGEI + G  
Sbjct: 417 LTESC-GGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGY-DALSDVPRGEICLRGNT 474

Query: 512 VTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSL 571
           +  GY K ++ T+EV  +D     WF+TGD+G+   +G ++IIDRKK+I KL  GEYV++
Sbjct: 475 LFSGYHKRQDLTEEVL-IDG----WFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAV 529

Query: 572 GKVEAALIVSPYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQGI------------- 618
             +E      P + +I ++ + F S+ VA+VV  + A+E+WAA                 
Sbjct: 530 ENLENTYSRCPLIASIWVYGNSFESFLVAVVVPDRQALEDWAANNNKTGDFKSLCKNLKA 589

Query: 619 ----------VGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLA 668
                      GK  +L  FE+   I L   P+  E  L+T   K+KR  + K + D + 
Sbjct: 590 RKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCID 649

Query: 669 RLY 671
           +LY
Sbjct: 650 QLY 652

Length = 660

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score =  308 bits (789), Expect = 2e-95
 Identities = 202/649 (31%), Positives = 328/649 (50%), Gaps = 65/649 (10%)

Query: 55  EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFE 114
           EG+ +  ++F  S +++ +  +LG R+++        +G+       G+Y W TY + ++
Sbjct: 42  EGMDSCWDVFRMSVEKYPNNPMLGRREIV--------DGKP------GKYVWQTYQEVYD 87

Query: 115 TICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSL 174
            +    + L  +G K E +  I+     EW ++++ C    +  V +Y +LG  A+ + +
Sbjct: 88  IVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFII 147

Query: 175 NETEVTTVICGSKELKKLVDL-SGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADV 233
           + +EV+ V    K++ +L        + +K V+             E  G   I ++ + 
Sbjct: 148 SHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFG-LVIYAWDEF 206

Query: 234 QILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPD----L 289
             LG     D      +D+  IMYTSG+TG PKGVM+++ +++  ++ V+ ++      L
Sbjct: 207 LKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAAL 266

Query: 290 GSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPT 349
             KDVYL+YLPLAH+ + V E      G+AIG+       D    I+     D   L+PT
Sbjct: 267 TVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWR----GDVKLLIE-----DLGELKPT 317

Query: 350 VMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLE-KLLWNL 408
           +  +VP +LDRV  G++KK+   G L K +FD A++ +   +     G   +E   L + 
Sbjct: 318 IFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKK---GQSHVEASPLCDK 374

Query: 409 LVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDD 468
           LVF+KV+  LGG +R ILSG APL++  + F+ +     + QGYGLTE+CAG TF  + D
Sbjct: 375 LVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAG-TFVSLPD 433

Query: 469 S--SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEV 526
               +G VG P+P   I+L   PE  Y    S  PRGEI I G  +  GY+K E+ TKEV
Sbjct: 434 ELDMLGTVGPPVPNVDIRLESVPEMEYDALAS-TPRGEICIRGKTLFSGYYKREDLTKEV 492

Query: 527 YKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDN 586
             +D     W +TGDVG+   +G ++IIDRKK+I KL  GEYV++  +E        VD+
Sbjct: 493 L-IDG----WLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDS 547

Query: 587 IMMHADPFHSYCVALVVASQPAVEEWAAKQGIVG-----------------------KNA 623
           + ++ + F S+ VA+   +Q  +E WAA+ G+ G                       K  
Sbjct: 548 VWVYGNSFESFLVAIANPNQQILERWAAENGVSGDYNALCQNEKAKEFILGELVKMAKEK 607

Query: 624 RLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLYE 672
           ++  FEI   I L   P+  E  L+T   K KR  + K +   +  +Y+
Sbjct: 608 KMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDEMYK 656

Length = 666

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  288 bits (738), Expect = 9e-91
 Identities = 133/483 (27%), Positives = 191/483 (39%), Gaps = 76/483 (15%)

Query: 108 TYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGE 167
           TY +  E     A+ L  LG    +RVAI      EW VA+    +     V +  SL  
Sbjct: 1   TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60

Query: 168 EALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKI 227
           E L Y L ++E   +I   + L KL+++  +L  +  +I +  +        +       
Sbjct: 61  ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDD------- 113

Query: 228 TSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP 287
              A         PVD D     D+A I+YTSG+TG PKGVM+TH N+LA  + +     
Sbjct: 114 ELLAGASAEPPAPPVDPD-----DLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFG 168

Query: 288 DLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLR 347
            L   D  L  LPL           +  +   +  G  L L    +             +
Sbjct: 169 -LTPGDRVLLLLPLHFDG------SVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYK 221

Query: 348 PTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWN 407
            TV+  VP +L  +     +K                   LS                  
Sbjct: 222 VTVLYGVPTLLRLLLKAPEEK----------------KYDLS------------------ 247

Query: 408 LLVFSKVRAILGGRIRFILSGGAPLSADT-QRFINICLGAPIGQGYGLTETCAGGTFSEV 466
                         +R +LSGG PL  +  +R      G P+  GYG TET    T +  
Sbjct: 248 -------------SLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLP 294

Query: 467 DD--SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK 524
            D     G +G PLP   +K++D  EG  +    P   GE+ I GP V  GY  + E T 
Sbjct: 295 GDPEVKPGSIGRPLPGVEVKVLD-EEGEPV---PPGEVGELCIRGPGVARGYLNDPELTA 350

Query: 525 EVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
           E +  D  G   + TGD+G+   DG LEI+ RK D VK+  GE +  G++EA L+  P V
Sbjct: 351 ERFVED--GWGMYRTGDLGRWDEDGYLEILGRKDDQVKI-RGERIEPGEIEAVLLEHPGV 407

Query: 585 DNI 587
              
Sbjct: 408 AEA 410

Length = 412

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  246 bits (630), Expect = 1e-73
 Identities = 163/626 (26%), Positives = 244/626 (38%), Gaps = 105/626 (16%)

Query: 51  STSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYG 110
                   TLA L E++ + + D+              +   GR            LTY 
Sbjct: 4   LMRMTAELTLASLLERAARRNPDR------------PALIFLGRGGR---------LTYR 42

Query: 111 QAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEAL 170
           +        A+ L  LG K  +RVAI      E+ +A     R     V +   L    L
Sbjct: 43  ELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPREL 102

Query: 171 CYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSF 230
            Y LN+     +I  ++    L  ++  L  V  V+ +         ++E          
Sbjct: 103 AYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLPITLEALAAEGPGPD 162

Query: 231 ADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV-PDL 289
           AD        PVD D     D+A ++YTSG+TGLPKGV++TH N+LA  + +   +   L
Sbjct: 163 AD------ARPVDPD-----DLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGL 211

Query: 290 GSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPT 349
              DV L++LPL H+       LI G+ + +  G  L L        +         + T
Sbjct: 212 TPDDVVLSWLPLFHIF-----GLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVT 266

Query: 350 VMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLL 409
           V++ VP  L  +                    L                           
Sbjct: 267 VLSGVPTFLREL--------------------LDNP------------------------ 282

Query: 410 VFSKVRAILGGRIRFILSGGAPLSADT-QRFINICLGAPIGQGYGLTETCAGGTFSEVDD 468
              K    L   +R +LSGGAPL  +  +RF        I +GYGLTET    T +  DD
Sbjct: 283 --EKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDD 340

Query: 469 SS--VGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEV 526
                G VG PLP   ++++D P+GG +    P   GEI + GPNV  GY+   E T E 
Sbjct: 341 LLAKPGSVGRPLPGVEVRIVD-PDGGEVL---PGEVGEIWVRGPNVMKGYWNRPEATAEA 396

Query: 527 YKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVD- 585
           +  D     W  TGD+G V  DG L I+ R KD++    GE +   ++EA L   P V  
Sbjct: 397 FDED----GWLRTGDLGYVDEDGYLYIVGRLKDLIIS-GGENIYPEEIEAVLAEHPAVAE 451

Query: 586 -NIMMHADPFHSYC-VALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTS 643
             ++   D       VA+VV       E  A++       RL  +++P  +  +      
Sbjct: 452 AAVVGVPDERWGERVVAVVVLKPGGDAELTAEELRAFLRKRLALYKVPRIVVFV------ 505

Query: 644 EAGLVTAALKIKREAIRKAFADDLAR 669
           +    TA+ KI R A+R+ +  +   
Sbjct: 506 DELPRTASGKIDRRALREEYRAEPRL 531

Length = 534

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  239 bits (611), Expect = 4e-71
 Identities = 160/575 (27%), Positives = 248/575 (43%), Gaps = 97/575 (16%)

Query: 108 TYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGE 167
           T+ Q  +     A+ L  LG +  +R+AI +   AEW +A    +      V +Y +L  
Sbjct: 8   TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLTA 67

Query: 168 EALCYSLNETEVTTVICGSKELKKLVDLSGQLDTV-KHVICMDANIPSAVSSVEQSGRWK 226
           E + Y L  ++   +  G     KL D       V + +  +     S +    +   W 
Sbjct: 68  ETIRYVLEHSDAKALFVG-----KLDDWDAMKAGVPEGLPTIILFPYSTLKDHYK---WD 119

Query: 227 ITSFADVQILGRENPVDADY-PVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI 285
                   +L    P+     P   D+A I+YTSG+TG PKGVM++ G   A  +     
Sbjct: 120 -------DLLAATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLSFGA-FAFAAQGTIE 171

Query: 286 VPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASV 345
           +  L   D  L+YLPLAH+ E V        G ++  G  +   ++          D   
Sbjct: 172 IIGLTPNDRLLSYLPLAHIAERVIV-----EGGSLYSGAEVFFVESLDTFAA----DLQR 222

Query: 346 LRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLL 405
            RPTV  SVP +  + + G+  K+  +     KL  L                  L+  +
Sbjct: 223 ARPTVFFSVPRLWTKFQQGILAKLPPE-----KLNLL------------------LKIPI 259

Query: 406 WNLLVFSKVRAILG-GRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFS 464
            + LV  K+   LG  + R   SG AP+      +    LG PI +GYG+TE  A  T +
Sbjct: 260 LSSLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYR-KLGLPICEGYGMTENFAYSTLN 318

Query: 465 EVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK 524
              D  +G VG P+P   +K+          S+     GEI+I  P +  GY+K+ EKT 
Sbjct: 319 YPGDRRIGTVGKPIPGVELKI----------SED----GEILIRSPGLMSGYYKDPEKTA 364

Query: 525 EVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
           E +  D     W +TGD G++  DG L+I  R K++ K   G+YV+   +E  L  +P+V
Sbjct: 365 EAFTEDG----WLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYVAPAPIENLLSANPHV 420

Query: 585 DNIMMHADPFHSYCV---------ALVVASQPA-------VEEWAAKQGIVGKNARLDKF 628
           + +          CV         ALVV S+ A       VEE + +Q +   N+ L+  
Sbjct: 421 EQV----------CVVGSGLPQPVALVVLSEAADPLEREEVEE-SLQQTLAKVNSELESH 469

Query: 629 EIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAF 663
           E  + + ++   WT E GL+T  LKIKR  + K +
Sbjct: 470 ERLSALVVVKEAWTVENGLLTPTLKIKRNVVEKHY 504

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  183 bits (467), Expect = 2e-50
 Identities = 134/542 (24%), Positives = 201/542 (37%), Gaps = 121/542 (22%)

Query: 59  TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
           T+  +     ++H DK              V  +GR             TY +  E +  
Sbjct: 7   TIGRILRHGARKHPDK------------EAVYFDGRRT-----------TYAELDERVNR 43

Query: 119 FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETE 178
            A+ L  LG KK +RVA+F     E+  A     +    +  I   L  E + Y LN+ E
Sbjct: 44  LANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAE 103

Query: 179 VTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGR 238
              V+  S+ +  L  +  QL TV+ VI        A     + G +        ++L  
Sbjct: 104 DRVVLVDSEFVPLLAAILPQLPTVRTVIVEGD--GPAAPLAPEVGEY-------EELLAA 154

Query: 239 ENPVDADYPVSA-DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA 297
            +       +   D A ++YTSG+TG PKGV+++H N L   S  +     L   DVYL 
Sbjct: 155 ASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRN-LFLHSLAVCAWLKLSRDDVYLV 213

Query: 298 YLPLAHVLELVAENLIAGVG-SAIGYGTPLTLTDT--SSKIKKGTQGDASVLRPTVMASV 354
            +P+ HV          G+   A+  G    +        +    + +    R T   +V
Sbjct: 214 IVPMFHVHAW-------GLPYLALMAGAKQVIPRRFDPENLLDLIETE----RVTFFFAV 262

Query: 355 PAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKV 414
           P I                 L K     AY    S                         
Sbjct: 263 PTIW--------------QMLLKAP--RAYFVDFS------------------------- 281

Query: 415 RAILGGRIRFILSGGAPLSADT-QRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGR 473
                  +R ++ GGA L     + F     G  + QGYG+TET    +    +D   G+
Sbjct: 282 ------SLRLVIYGGAALPPALLREFKEK-FGIDLVQGYGMTETSPVVSVLPPEDQLPGQ 334

Query: 474 ------VGAPLPCSFIKLIDWPEGGYLTSDSPMPR-----GEIVIAGPNVTVGYFKNEEK 522
                  G PLP    +++D  +G        +P      GEI++ GP +  GY+   E 
Sbjct: 335 WTKRRSAGRPLPGVEARIVD-DDG------DELPPDGGEVGEIIVRGPWLMQGYWNRPEA 387

Query: 523 TKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSP 582
           T E     D G  W +TGDVG +  DG L I DR KD++    GE +   ++E AL   P
Sbjct: 388 TAETI---DGG--WLHTGDVGYIDEDGYLYITDRIKDVII-SGGENIYPRELEDALYGHP 441

Query: 583 YV 584
            V
Sbjct: 442 AV 443

Length = 521

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score =  184 bits (470), Expect = 2e-50
 Identities = 141/512 (27%), Positives = 227/512 (44%), Gaps = 59/512 (11%)

Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
             +  LTY Q +E     A    +LG ++   V I      EWF+A  G        V I
Sbjct: 4   DGWHTLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGI 63

Query: 162 YASLGEEALCYSLNETEVTT-VICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVE 220
           Y +   EA  Y    +E    V+  +K+L+K++ +  QL  +K +I     +     ++ 
Sbjct: 64  YTTNSPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQYREPLKEKEPNLY 123

Query: 221 QSGRWKITSFADVQILGRENPVDADYPVSADV-----AVIMYTSGSTGLPKGVMMTHGNV 275
               WK     +   LGR  P +    +           ++YTSG+TG+PKGVM++H N+
Sbjct: 124 ---SWK-----EFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNI 175

Query: 276 LATVSAV---MTIVPDLGSKDVYLAYLPLAHV-LELVAENLIAGVGSAIGYGTPLTLTDT 331
             T  A    M +      ++  ++YLPL+H+  +++   L   VG  + +  P  L   
Sbjct: 176 TWTAKAAVKHMDLRTVG--QESVVSYLPLSHIAAQILDIWLPISVGGCVYFAQPDAL--- 230

Query: 332 SSKIKKGTQGDA-SVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARR--- 387
                KGT       +RPT    VP + +++++ ++       GL +K+   ++A+    
Sbjct: 231 -----KGTLVKTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIA--SWAKGVGL 283

Query: 388 ---LSAINGSW--FGAWGLEKLLWNLLVFSKVRAILG-GRIRFILSGGAPLSADTQRFIN 441
              L  + G       + L K     LVF KVR  LG  R +   +G AP+S +T  F  
Sbjct: 284 ETNLKLMGGESPPPMCFRLAK----KLVFKKVRKALGLDRCQKFFTGAAPISRETLEFF- 338

Query: 442 ICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMP 501
           + L  PI + YG++ET    T S   +  +   G  LP    K+ +    G         
Sbjct: 339 LSLNIPIMELYGMSETSGPHTVSNPQNYRLLSCGKALPGCETKIHNPDADGI-------- 390

Query: 502 RGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
            GEI I G +V +GY   EEKT+E   +D+ G  W ++GD+G +  DG L I  R K+++
Sbjct: 391 -GEICIWGRHVFMGYLNMEEKTEE--AIDEDG--WLHSGDLGFLDDDGFLYITGRIKELI 445

Query: 562 KLQHGEYVSLGKVEAALIVS-PYVDNIMMHAD 592
               GE V    +E A+    P + N M+  D
Sbjct: 446 ITAGGENVPPVPIEEAVKKELPIISNAMLVGD 477

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  171 bits (436), Expect = 5e-48
 Identities = 109/400 (27%), Positives = 163/400 (40%), Gaps = 87/400 (21%)

Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAE 310
           D A I+YTSG+TG PKGV+++H N+LA   A+   +  L   DV L+ LPL HV+   + 
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAI-GLTEGDVLLSVLPLFHVVGGGSG 59

Query: 311 N---LIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRK 367
               L+AG G+ + Y            I++         R TV+  VP + D +      
Sbjct: 60  LLGALLAG-GTVVLYEGFPFPLSFLELIEQ--------YRVTVLFGVPTLYDALAK---- 106

Query: 368 KVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILS 427
                               LS                                +R ++S
Sbjct: 107 ------------AAEDRGYDLS-------------------------------SLRLLIS 123

Query: 428 GGAPLSADTQRFINICLGAPIGQGYGLTETCAG-GTFSEVDDSSVGRVGAPLPCSFIKLI 486
           GG PLS +         GAPI +GYGLTET     T  + +    G VG P+P   ++++
Sbjct: 124 GGEPLSPELLERFEERPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRVV 183

Query: 487 DWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVH 546
           D  EG  L        GE+V+ GP V  GY+ N  +T      D     W+ TGD+G + 
Sbjct: 184 D-EEGKPLPPGEV---GELVVRGPWVMKGYWNNPPETTAAATED----GWYRTGDLGYLD 235

Query: 547 ADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDN--IMMHADPFHSY----CVA 600
            +G L I  R KD++K+  GE V   +VE+ L+  P V    ++   D          V 
Sbjct: 236 EEGYLYITGRSKDLIKVG-GENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERIVAFVV 294

Query: 601 LVVASQPAVEE---WAAKQGIVGKNARLDKFEIPAKIKLL 637
           L   +    EE      +        RL  +++P  I+ +
Sbjct: 295 LRPGADALAEELKAHLRE--------RLAPYKVPRVIEFV 326

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  173 bits (442), Expect = 2e-47
 Identities = 134/517 (25%), Positives = 196/517 (37%), Gaps = 157/517 (30%)

Query: 60  LAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNF 119
           LA+L E++ +   D+              +   GR            LTY +  E    F
Sbjct: 1   LADLLERAARRFPDR------------PALTFFGRK-----------LTYAELDELSDRF 37

Query: 120 ASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179
           A+ L QLG KK +RVA+      ++ +A  G  +    VV +        L + LN++  
Sbjct: 38  AAYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGA 97

Query: 180 TTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRE 239
             +I                                             SF D       
Sbjct: 98  KVLIVA------------------------------------------ISFEDA----LA 111

Query: 240 NPVDADYPVSA---DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL-GSKDVY 295
           +      PV     D+AV+ YT G+TG+PKG M+TH N++A V  +   V DL   +D +
Sbjct: 112 SGAPLPLPVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQIAAWVKDLREGEDRF 171

Query: 296 LAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVL------RPT 349
           L  LPL H+  L   N++ G+      G    L      +        +VL      R T
Sbjct: 172 LTALPLFHIFGLTV-NMLLGLRL----GATNVL------VPN--FRPINVLKEIKRYRFT 218

Query: 350 VMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLL 409
           +   VP +                          Y   L             +K      
Sbjct: 219 IFPGVPTL--------------------------YNALL--------NHPEFKKYD---- 240

Query: 410 VFSKVRAILGGRIRFILSGGAPLSADTQ-RFINICLGAPIGQGYGLTETCAGGTFSEVDD 468
            FS +R          +SGGAPL  +   RF     GAP+ +GYGLTET    T + +D 
Sbjct: 241 -FSSLR--------LCISGGAPLPVEVAERFEEK-TGAPLVEGYGLTETSPVTTVNPLDG 290

Query: 469 SS-VGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNVTVGYFKNEEKTK 524
               G +G PLP + +K++D  EG      + +P    GE+V+ GP V  GY+   E+T 
Sbjct: 291 ERKPGSIGLPLPGTEVKIVD-DEG------NELPPGEVGELVVRGPQVMKGYWNRPEETA 343

Query: 525 EVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
           EV   D     W  TGD+G +  DG   I+DRKKD++
Sbjct: 344 EV-LTD----GWLRTGDIGYMDEDGYFYIVDRKKDMI 375

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  162 bits (412), Expect = 3e-43
 Identities = 123/485 (25%), Positives = 194/485 (40%), Gaps = 95/485 (19%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           LTY +        +  + +L  K+ E + I   +     +A           V +  + G
Sbjct: 8   LTYRKLLTASLALSRLIKKL-TKEGENIGIMLPSSVAGALANLALLLAGKVPVMLNFTAG 66

Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSG--QLDTVKHVICMDANIPSAVSSVEQSGR 224
           EE L  +  +  + TVI     L+KL  L G   L     ++ ++ ++ + +S  ++   
Sbjct: 67  EEGLRSACKQAGIKTVITSRAFLEKL-KLEGLVVLLEGVRIVYLE-DLRAKISKADKLKA 124

Query: 225 WKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT 284
           +         +         D     D AVI++TSGS GLPKGV+++H N+LA +  +  
Sbjct: 125 FLAAKLPPALLRLFLAGAKPD-----DPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAA 179

Query: 285 IVPDLGSKDVYLAYLPLAHVLELVAEN---LIAGVGSAIGYGTPLTLTDTSSKIKKGTQG 341
           ++ DL ++DV L  LPL H   L       L+ G+     Y  PL     +  I+     
Sbjct: 180 VI-DLNTEDVLLGALPLFHAFGLTVTLLLPLLTGLRVVY-YPNPLDAKKIAELIRD---- 233

Query: 342 DASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGL 401
                + T++   P  L                         YAR               
Sbjct: 234 ----YKATILCGTPTFLR-----------------------GYARN-------------- 252

Query: 402 EKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADT-----QRFINICLGAPIGQGYGLTE 456
                +   FS         +R +++G   L   T     ++F     G  I +GYG TE
Sbjct: 253 ----AHPEDFS--------SLRLVVAGAEKLPEATRELFEEKF-----GIRILEGYGATE 295

Query: 457 TCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGE---IVIAGPNVT 513
                + +    +  G VG PLP   ++++  PE         +P GE   +++ GPNV 
Sbjct: 296 CSPVISVNTPMGNKPGTVGRPLPGIEVRIVS-PETH-----EELPIGEGGLLLVRGPNVM 349

Query: 514 VGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGK 573
            GY  NEEKT EV  + D    W+ TGD+G++  DG L I+ R K   K+  GE VSL  
Sbjct: 350 SGYLNNEEKTSEVEVLGD---GWYDTGDIGKIDEDGFLTIVGRLKRFAKIG-GEMVSLTA 405

Query: 574 VEAAL 578
           VE  L
Sbjct: 406 VEELL 410

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score =  158 bits (403), Expect = 5e-42
 Identities = 140/570 (24%), Positives = 226/570 (39%), Gaps = 144/570 (25%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           +T+ +  E + + A  LA LG KK +RVA+      E  + +    +     V +   L 
Sbjct: 28  VTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLS 87

Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
            E L + L++ EV  +I       KL+                  I    + +       
Sbjct: 88  REELLWQLDDAEVKCLITDDDFEAKLI----------------PGISVKFAELMN----- 126

Query: 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV 286
                + +I         ++ +  +VA IMYTSG+TG PKGV+ T+GN     SAV +  
Sbjct: 127 -GPKEEAEIQ-------EEFDLD-EVATIMYTSGTTGKPKGVIQTYGNHWW--SAVGS-A 174

Query: 287 PDLG--SKDVYLAYLPLAHV--LELVAENLIAGVGSAIGYGTPLTLTDT--SSKIKKGTQ 340
            +LG    D +LA +P+ H+  L ++  ++I        YG  + L +   + KI K  Q
Sbjct: 175 LNLGLTEDDCWLAAVPIFHISGLSILMRSVI--------YGMRVVLVEKFDAEKINKLLQ 226

Query: 341 GDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWG 400
                   T+++ V  +L R              L ++L +  Y         S      
Sbjct: 227 TG----GVTIISVVSTMLQR--------------LLERLGEGTY-------PSS------ 255

Query: 401 LEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL--GAPIGQGYGLTETC 458
                                 R +L GG P        +  C   G P+ Q YG+TET 
Sbjct: 256 ---------------------FRCMLLGGGPAPKPL---LEQCKEKGIPVYQSYGMTETA 291

Query: 459 AGGTFSEV-----DDS--SVGRVGAPL-PCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP 510
                S++     +D+   +G  G PL PC  +K+             P   GEIV+ GP
Sbjct: 292 -----SQIVTLSPEDALTKLGSAGKPLFPCE-LKIEKDGVVV-----PPFEEGEIVVKGP 340

Query: 511 NVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVS 570
           NVT GY   E+ T+E ++    G  WF TGD+G +  +G L ++DR+ D++ +  GE + 
Sbjct: 341 NVTKGYLNREDATRETFQ---DG--WFKTGDIGYLDEEGFLYVLDRRSDLI-ISGGENIY 394

Query: 571 LGKVEAALIVSPYVDNIM---MHADPFHSYCVALVVASQPAVEEWAAKQGIVGKNARLDK 627
             ++E  L+  P V       +  D +    VA VV S    EE            +L K
Sbjct: 395 PAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGEVTEEELRHFC----EEKLAK 450

Query: 628 FEIPAKIKLL-SYPWTSEAGLVTAALKIKR 656
           +++P +   +   P         A+ K+ R
Sbjct: 451 YKVPKRFYFVEELP-------RNASGKLLR 473

Length = 483

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  157 bits (398), Expect = 3e-41
 Identities = 134/534 (25%), Positives = 209/534 (39%), Gaps = 115/534 (21%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           LTY +    +   A+GLA  G +K + V + +    E+ V           V T      
Sbjct: 33  LTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYT 92

Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
              +   + ++     I  S+  +KL  L+  L+ V  V+   A+  SA           
Sbjct: 93  PAEIAKQVKDSGAKLAITTSELAEKLASLA--LEPV--VLLDSADDGSAAIDDLLFADE- 147

Query: 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV 286
                 V ++ ++           DVA + Y+SG+TG  KGVM+TH N++A V+ ++   
Sbjct: 148 --PEPPVVVIKQD-----------DVAALPYSSGTTGRSKGVMLTHRNLIANVAQLVAGE 194

Query: 287 -PDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLT-----LTDTSSKIKKGTQ 340
            P+   +DV L  LP+ H+  L    +I      +G  T +      L    + I+K   
Sbjct: 195 GPNFDREDVTLCVLPMFHIYGL---TVILLALLRLG-ATVVVMPRFDLEKFLAAIEK--- 247

Query: 341 GDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWG 400
                 + T +  VP I+  +          K  +  K +DL                  
Sbjct: 248 -----YKVTHLPVVPPIVLAL---------VKHPIVDK-YDL------------------ 274

Query: 401 LEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADT-QRFINICLGAPIGQGYGLTETCA 459
                      S ++ I         SG APL  +  + F     G  +GQGYG+TE+  
Sbjct: 275 -----------SSLKQIG--------SGAAPLGKELAEAFRARFPGVELGQGYGMTESSP 315

Query: 460 GGT--FSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYF 517
             T       D   G VG  +P    K++D   G    S  P   GE+ + GP V  GY 
Sbjct: 316 VTTMCPVPEKDPKPGSVGRLVPNVEAKIVDPETG---ESLPPNQPGELWVRGPQVMKGYL 372

Query: 518 KNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAA 577
            N E T E   +D  G  W +TGD+G    DG L I+DR K+++K + G  V+  ++EA 
Sbjct: 373 NNPEATAET--IDKDG--WLHTGDLGYFDEDGYLFIVDRLKELIKYK-GFQVAPAELEAL 427

Query: 578 LI---------VSPYVDNIMMHADPFHSYCVALVVASQPA------VEEWAAKQ 616
           L+         V PY D      +      +A VV    +      V ++ AKQ
Sbjct: 428 LLSHPEIADAAVIPYPD------EEAGEIPMAFVVRQPGSELSEDEVMQFVAKQ 475

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  150 bits (380), Expect = 8e-39
 Identities = 136/552 (24%), Positives = 217/552 (39%), Gaps = 137/552 (24%)

Query: 63  LFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASG 122
           + E + +  GD      R+++SR  +             G     TY   +  +   A+ 
Sbjct: 1   ILEHAARYFGD------REIVSRTPD-------------GSIHRYTYADFYRRVRRLANA 41

Query: 123 LAQLGHKKEERVAIFA-DTRAE---WF-VALQGCFRRNVTVVTIYASLGEEALCYSLNET 177
           L  LG K  +RVA  A +T      +F V   G       + T+   L  E + Y +N  
Sbjct: 42  LESLGVKPGDRVATLAWNTHRHLELYFAVPGMG-----AVLHTLNPRLSPEQIAYIINHA 96

Query: 178 EVTTVICGSKELKKLVD-LSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQIL 236
           E   VI    +   L++ ++ +L TVK V+  D       S         + ++ +  +L
Sbjct: 97  EDK-VIFVDDDFLPLLEAIAPRLPTVKAVVVYDDADMPETSLPN------VYAYEE--LL 147

Query: 237 GRENPVDADYPV--SADVAVIMYTSGSTGLPKGVMMTH-GNVLATVSAVMTIVPDLGSKD 293
             E+P + ++P       A + YTSG+TG PKGV+ +H   VL T+++ +     L   D
Sbjct: 148 EEESP-EYEWPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASALPDSLGLSESD 206

Query: 294 VYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSK-IKKGTQGDASVL------ 346
             L  +P+ HV                 +G P   T   +K +  G   D + L      
Sbjct: 207 TVLPVVPMFHVN---------------AWGLPYAATMVGAKLVLPGRYLDPASLLDLIEE 251

Query: 347 -RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLL 405
            + TV A VP I                                                
Sbjct: 252 EKVTVSAGVPTI------------------------------------------------ 263

Query: 406 WNLLV--FSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTF 463
           W  L+         L    R ++ G A   +  ++      G  +   +G+TET   GT 
Sbjct: 264 WLGLLNYLEANGKDLSSLRRVVVGGSALPRSLIEKLEE--RGVEVIHAWGMTETSPLGTV 321

Query: 464 S-----EVDDSSVGRV------GAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNV 512
           S      VD     ++      G P+P   ++++D  EG  L  D     GE+V+ GP V
Sbjct: 322 SRLKPHLVDLPEEEKLELRAKQGRPVPGVELRIVD-DEGNELPWDGKTV-GELVVRGPWV 379

Query: 513 TVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLG 572
           T  Y+K+ EKT+E+ + D     WF TGDV  +  DG ++I DR KD++K   GE++S  
Sbjct: 380 TGSYYKDPEKTEELTR-DG----WFRTGDVAVIDEDGYIQITDRAKDVIK-SGGEWISSV 433

Query: 573 KVEAALIVSPYV 584
           ++E AL+  P V
Sbjct: 434 ELENALMAHPAV 445

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  143 bits (364), Expect = 6e-38
 Identities = 97/328 (29%), Positives = 134/328 (40%), Gaps = 95/328 (28%)

Query: 250 ADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVA 309
            D A+I+YTSG+TG PKGVM+TH N+LA  +       DL   DVYL   PL H     A
Sbjct: 1   DDPALILYTSGTTGRPKGVMLTHRNLLAN-AVNALAGVDLSPGDVYLLAAPLYH----AA 55

Query: 310 ENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDA-SVL------RPTVMASVPAILDR-V 361
             L      A+  G  + L           + D  +VL      R T    VP +  R +
Sbjct: 56  GGLFL--LPALAAGGTVVLMP---------KFDPEAVLDLIERHRVTHTFLVPTMFQRLL 104

Query: 362 RDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGR 421
           R     + D                                         S +R I    
Sbjct: 105 RLPDFARYD----------------------------------------LSSLRLI---- 120

Query: 422 IRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDD-----SSVGRVGA 476
               + G AP+ A+ +R +    G    QGYG+TET    T    +D      SVGR   
Sbjct: 121 ----IYGAAPMPAELKRAMIEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGR--- 173

Query: 477 PLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNVTVGYFKNEEKTKEVYKVDDKG 533
           P+P   ++++D  +G        +P    GEIV+ GP V  GY+   E T E  + D   
Sbjct: 174 PVPGVEVRIVD-EDGR------ELPPGEVGEIVVRGPAVMAGYWNRPEATAEALR-DG-- 223

Query: 534 MRWFYTGDVGQVHADGCLEIIDRKKDIV 561
             W +TGD+G +  DG L I+DRKKD++
Sbjct: 224 --WLHTGDLGYLDEDGYLYIVDRKKDMI 249

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  144 bits (365), Expect = 9e-37
 Identities = 106/486 (21%), Positives = 175/486 (36%), Gaps = 90/486 (18%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           LTYG     +   A+ L  LG  K +RVAI+     E  +AL    R       +   L 
Sbjct: 41  LTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLS 100

Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
            EA+   + +     +I      +               I +  +  + +SSV    R  
Sbjct: 101 AEAVADRIADLGPKVLIADDGTFRNG-----------KEIALLEDADAVLSSVVVVPR-L 148

Query: 227 ITSFADVQILGRENPVDADYPVSA-DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI 285
              + +   + + +      P+ A D   ++YTSG+TG PKG++ +HG  L         
Sbjct: 149 GLWYDEA--VEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKF 206

Query: 286 VPDLGSKDVYLAYLPLAHV---LELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGD 342
             DL   D +        +      V   L +G  + +  G P    +   +        
Sbjct: 207 HGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEA------- 259

Query: 343 ASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLE 402
               + T+  + P  L R+          K GL +          LS             
Sbjct: 260 LEKYKVTIFGTSPTFLRRLM---------KLGLGEP-------YDLS------------- 290

Query: 403 KLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGT 462
                              +R + S G PL+ +   +    LG  I   YG TET   G 
Sbjct: 291 ------------------SLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETG-MGF 331

Query: 463 FSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMP--RGEIVIAGPN--VTVGYFK 518
            +       G  G PLP   ++ +D  EG      +P+P   GE+V+  P   + + Y+ 
Sbjct: 332 IAGRPPVKNGSSGLPLPGYAVRRVD-DEG------NPVPPGVGELVVRLPWPGMALTYWN 384

Query: 519 NEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAAL 578
           + E+ KE Y       RW+ TGD  +   DG   +  R  D++K+  G+ +   ++E+ L
Sbjct: 385 DPERYKEAYF-----GRWYRTGDWAERDEDGYFWLHGRSDDVIKVS-GKRIGPLEIESVL 438

Query: 579 IVSPYV 584
           +  P V
Sbjct: 439 LAHPAV 444

Length = 528

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score =  141 bits (357), Expect = 5e-35
 Identities = 138/577 (23%), Positives = 236/577 (40%), Gaps = 125/577 (21%)

Query: 106 WLTYGQAFETICNFASGLAQLGHK-------KEER-------VAIFADTRAEWFVALQGC 151
           ++TYG  F+ + +F+  L     K        EE+       + ++      W VA   C
Sbjct: 91  YITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLAC 150

Query: 152 FRRNVTVVTIYASLGEEALCYSLNETE----------VTTVICGSKE---LKKLVDLSGQ 198
               VT + +++    + +   LNET+          V  ++    E   LKKL+     
Sbjct: 151 MLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELPHLKKLI----I 206

Query: 199 LDTVKHVICMDANIP-----SAVSS---VEQSGRWKITSFADVQILGRENPVDAD----- 245
           LDT+     ++ N       S V++          K    ++        P++ D     
Sbjct: 207 LDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLE 266

Query: 246 -----------------------------YPVSAD----VAVIMYTSGSTGLPKGVMMTH 272
                                        Y +  +    +  I+YTSG++G PKGVM+++
Sbjct: 267 KIKDLKEKAKKLGISIILFDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSN 326

Query: 273 GNVLATV------SAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPL 326
            N+  TV      S      P       +L+YLP++H+ E V   L   +G  I      
Sbjct: 327 KNLYNTVVPLCKHSIFKKYNPK-----THLSYLPISHIYERVIAYLSFMLGGTI------ 375

Query: 327 TLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYAR 386
              +  SK       D    +  ++A VP + +R+   +  +++    L + L     + 
Sbjct: 376 ---NIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSL 432

Query: 387 RLSAINGSWFGAWGLEKLLWNLL-VFSKVRAILGGRIRFILSGGAPLSADTQRFINICLG 445
           R S  NG  F      K L  +  + SK++  +   +  IL+GG  LS      +++ L 
Sbjct: 433 RKSNNNG-GFS-----KFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLN 486

Query: 446 APIGQGYGLTETCAGGTF-SEVDDSSVGRVGAPL-PCSFIKLIDWPEGGYLTSDSPMPRG 503
               QGYGLTET  G  F    DD++   +G P+ P +  K+  W    Y  +D+  P+G
Sbjct: 487 VNYYQGYGLTET-TGPIFVQHADDNNTESIGGPISPNTKYKVRTWET--YKATDTL-PKG 542

Query: 504 EIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKL 563
           E++I   ++  GYF  +E+TK  +  +D    +F TGD+ Q++ +G L  +DR K +VKL
Sbjct: 543 ELLIKSDSIFSGYFLEKEQTKNAF-TEDG---YFKTGDIVQINKNGSLTFLDRSKGLVKL 598

Query: 564 QHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVA 600
             GEY     +E  ++ + Y   I      F ++CV 
Sbjct: 599 SQGEY-----IETDMLNNLYSQ-I-----SFINFCVV 624

Length = 746

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  133 bits (336), Expect = 2e-33
 Identities = 123/492 (25%), Positives = 181/492 (36%), Gaps = 137/492 (27%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           LTYG+  +     A+ LA+LG +  + VA       E+ V    C R    +  I     
Sbjct: 2   LTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYR 61

Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
           E  L + L +                          + +   D                 
Sbjct: 62  ERELGFILRQARA-----------------------RVLFVPD----------------- 81

Query: 227 ITSFADVQILGRENPVDADYP-VSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI 285
              F              DY  +  DVA+++YTSG+TG PKGVM TH  +LA V + +  
Sbjct: 82  --EFRGF-----------DYAAMPDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVER 128

Query: 286 VPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASV 345
           +  L   DV L   PLAH+            G   G   PL L            G   V
Sbjct: 129 L-GLTPDDVVLMPSPLAHI-----------TGFLYGLELPLLL------------GATVV 164

Query: 346 L----RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGL 401
           L     P         L+ +R      V    G +  L DL  A   +            
Sbjct: 165 LQDRWDPA------RALELIR---EHGVTFTMGATPFLADLLAAADAAG----------- 204

Query: 402 EKLLWNLLVFSKVRAILGGRIRFILSGGAPLSAD-TQRFINICLGAPIGQGYGLTETCA- 459
              L                +R  L GGAP+  +  +R     LGA + + YG+TE    
Sbjct: 205 -PDL--------------PSLRVFLCGGAPVPRELARRAAEA-LGAKVVRAYGMTEVPLV 248

Query: 460 -GGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNVTVG 515
             GT  + DD      G P+P   ++++D          + +P    GE+ + GP + +G
Sbjct: 249 TVGTPDDPDDKRAATDGRPVPGVEVRIVD-------DDGNDVPPGEEGELQVRGPQLFLG 301

Query: 516 YFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVE 575
           Y    + T+      D G  WF TGD+G++ ADG L I  RKKDI+ ++ GE +S  ++E
Sbjct: 302 YLDPPDNTEAF---TDDG--WFRTGDLGRLDADGYLRITGRKKDII-IRGGENISAREIE 355

Query: 576 AALIVSPYVDNI 587
             L+  P V  +
Sbjct: 356 DLLLRHPAVAEV 367

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  131 bits (333), Expect = 3e-33
 Identities = 107/425 (25%), Positives = 172/425 (40%), Gaps = 99/425 (23%)

Query: 246 YPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHV- 304
            P     A I++TSGSTG PK V+ T GN LA+       +  L   D +L  LPL HV 
Sbjct: 73  QPDLDRPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLG-LTPDDNWLLSLPLFHVS 131

Query: 305 -LELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRD 363
            L +V  +L+         G  L L D     +   +   +    T ++ VP  L R+  
Sbjct: 132 GLAIVMRSLL--------AGGALVLPD-KFDAEAIAEALEN-HGVTHISLVPTQLQRL-- 179

Query: 364 GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIR 423
                                   L ++   W     L  L                  R
Sbjct: 180 ------------------------LESLGARW-----LSSL------------------R 192

Query: 424 FILSGGAPLSADTQRFINIC--LGAPIGQGYGLTETCAGGTFSEVDDS--SVGRVGAPLP 479
            +L GGAP+       +      G P+   YG+TET +     + DD    +G VG PLP
Sbjct: 193 AVLLGGAPIPPSL---LEQARQRGIPLYPTYGMTETASQVATLKPDDFLAKLGSVGKPLP 249

Query: 480 CSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYT 539
              +++++  +G            EI++ GP++ +GY      T  +   D+ G  WF+T
Sbjct: 250 GRELRIVNPQDG------------EILVRGPSLFLGYLPQGGLTPPL---DEDG--WFHT 292

Query: 540 GDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMM--HADP-FHS 596
           GD+G + A+G L ++ R+ D++ +  GE +   ++EA L+  P V+   +    D  +  
Sbjct: 293 GDLGYLDAEGYLYVLGRRDDLI-ISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQ 351

Query: 597 YCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKR 656
             VA VV +   V     +  +     +L K++ P +     YP         A+ KI R
Sbjct: 352 RPVAFVVPNDDPVSVEELQAFL---ADKLAKYKRPKRW----YPL--PELPRNASGKIDR 402

Query: 657 EAIRK 661
            A+R+
Sbjct: 403 AALRQ 407

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  132 bits (335), Expect = 1e-32
 Identities = 138/577 (23%), Positives = 211/577 (36%), Gaps = 157/577 (27%)

Query: 56  GISTLAELFEQSCKEHGDK---YLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQA 112
           G +TL +L++ +    GD+      G                             TY + 
Sbjct: 30  GDTTLVDLYDNAVARFGDRPALDFFGATT--------------------------TYAEL 63

Query: 113 FETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVT---IYASLGEEA 169
            + +   A+GL  LG +  +RVAI      +  VA     R    VV    +Y       
Sbjct: 64  GKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYT---AHE 120

Query: 170 LCYSLNETEVTTVICGSK---ELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQ----- 221
           L +   +      I   K    +++L   +  L+T+  V     N+ +A+  +++     
Sbjct: 121 LEHPFEDHGARVAIVWDKVAPTVERLRR-TTPLETIVSV-----NMIAAMPLLQRLALRL 174

Query: 222 ------SGRWKITSFA----------DVQILGRENPVDADYPVSADVAVIMYTSGSTGLP 265
                   R  +T  A          D  I G  + V    P   DVA+I+YTSG+TG P
Sbjct: 175 PIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKP 234

Query: 266 KGVMMTHGNVLATVSAVMTIVPDLGSKD-VYLAYLPLAHVLELVAENLIAGVGSAIG--- 321
           KG  +TH N+ A  +     VP LG      LA LP+ H   L    L   +  +IG   
Sbjct: 235 KGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAYGLT---LCLTLAVSIGGEL 291

Query: 322 -----YGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKK-VDAKGGL 375
                    L L      +KK          PT +  VP + +++ +   ++ VD  G  
Sbjct: 292 VLLPAPDIDLIL----DAMKKHP--------PTWLPGVPPLYEKIAEAAEERGVDLSG-- 337

Query: 376 SKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSAD 435
                                                         +R   SG   L   
Sbjct: 338 ----------------------------------------------VRNAFSGAMALPVS 351

Query: 436 TQRFINICLGAPIGQGYGLTETC---AGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGG 492
           T        G  + +GYGLTET     G   S  DD   G VG P P + ++++D PE  
Sbjct: 352 TVELWEKLTGGLLVEGYGLTETSPIIVGNPMS--DDRRPGYVGVPFPDTEVRIVD-PE-- 406

Query: 493 YLTSDSPMP---RGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADG 549
               D  MP    GE+++ GP V  GY+   E+T + +        WF TGDV  +  DG
Sbjct: 407 --DPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDG-----WFRTGDVVVMEEDG 459

Query: 550 CLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDN 586
            + I+DR K+++ +  G  V   +VE  L   P V++
Sbjct: 460 FIRIVDRIKELI-ITGGFNVYPAEVEEVLREHPGVED 495

Length = 573

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  130 bits (329), Expect = 2e-32
 Identities = 110/407 (27%), Positives = 163/407 (40%), Gaps = 82/407 (20%)

Query: 243 DADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLA 302
           D+   +  D A+I+YTSG+TG PKGV++THGN+ A   A++       + DV L  LPL 
Sbjct: 81  DSQPSLLVDPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAW-RWTASDVLLHALPLH 139

Query: 303 HVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVR 362
           HV  L      A         +   L     + +        + R TV   VP I  R+ 
Sbjct: 140 HVHGLF----NALHCPLWAGASVEFLPRFDPQER---DALRLLPRITVFMGVPTIYTRL- 191

Query: 363 DGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRI 422
                              L +     A                         A     +
Sbjct: 192 -------------------LEHYEFDDA------------------------AAAAARNL 208

Query: 423 RFILSGGAPLSADT-QRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCS 481
           R  +SG A L     +R+     G  + + YG+TET    +     +   G VG PLP  
Sbjct: 209 RLFVSGSAALPVPVLERWEER-TGHTLLERYGMTETGMALSNPLDGERRPGTVGLPLPGV 267

Query: 482 FIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGD 541
            ++++D  +GG   +   +  GEI + GPNV   Y+   E T E +  D     WF TGD
Sbjct: 268 EVRIVD-EDGGEPLAAGEV--GEIQVRGPNVFSEYWNKPEATAEAFTEDG----WFKTGD 320

Query: 542 VGQVHADGCLEIIDRKK-DIVKLQHGEY-VSLGKVEAALIVSPYVDNIMMHADPFHSY-- 597
           VG V  DG   I+ RK  DI+K   G Y VS  ++E AL+  P V  + +   P   +  
Sbjct: 321 VGVVDEDGYYRILGRKSDDIIK--SGGYKVSALEIEEALLEHPGVAEVAVIGVPDPDWGE 378

Query: 598 -CVALVVASQPA------VEEWAAKQGIVGKNARLDKFEIPAKIKLL 637
             VA+VV    A      +  WA          +L  ++IP ++ ++
Sbjct: 379 AVVAVVVPEAGAALTLAELRAWAR--------EKLAPYKIPKRVIVV 417

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  126 bits (318), Expect = 1e-31
 Identities = 76/253 (30%), Positives = 115/253 (45%), Gaps = 38/253 (15%)

Query: 422 IRFILSGGAPLSADTQRFINICLG-APIGQGYGLTETCAGGTFSEVDDS---SVGRVGAP 477
           +R  +SGGAP+  +  R I      A I  GYG+TET   GT +  DD      G VG P
Sbjct: 119 LRTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRP 178

Query: 478 LPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWF 537
           LP   +K++D P+GG +        GEI + G +V  GY+ + E T E    D     W 
Sbjct: 179 LPGVEVKIVD-PDGGEVPPGEV---GEICVRGYSVMKGYYNDPEATAEAIDAD----GWL 230

Query: 538 YTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSY 597
           +TGD+G +  DG L I+ R KD++  + GE +   ++E AL+  P V    +   P    
Sbjct: 231 HTGDLGYMDEDGYLRIVGRIKDMII-RGGENIYPAEIEEALLTHPAVAEAAVVGVPDERL 289

Query: 598 ------CVALVVASQPAVEE---WAAKQGIVGKNARLDKFEIPAKIKLLS-YPWTSEAGL 647
                  V L   +    EE   +           RL +F++P  ++ +   P       
Sbjct: 290 GEVVAAFVVLKPGATLTEEELIAFCR--------GRLARFKVPRYVRFVDELP------- 334

Query: 648 VTAALKIKREAIR 660
            TA+ KI++  +R
Sbjct: 335 RTASGKIQKFKLR 347

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score =  124 bits (313), Expect = 1e-30
 Identities = 116/498 (23%), Positives = 183/498 (36%), Gaps = 111/498 (22%)

Query: 108 TYGQAFETICN-FASGLAQLGH-KKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASL 165
           TY +  +   N  A  L   G     +RVA+  +  AE  VA+    +     V +  + 
Sbjct: 1   TYRE-LDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAY 59

Query: 166 GEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRW 225
             E L + L +     ++  S    +L  L      V  VI +D   P  +++++ +   
Sbjct: 60  PAERLAFILEDAGARLLLTDSALASRLAGL------VLPVILLD---PLELAALDDAP-- 108

Query: 226 KITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI 285
                          P         D+A ++YTSGSTG PKGV++TH +++  + A +  
Sbjct: 109 -------------APPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLL-AWLAR 154

Query: 286 VPDLGSKDVYLAYLPLAH---VLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGD 342
              L   D  L +  L+    V E+    L+AG        T +   +   +        
Sbjct: 155 RYGLDPDDRVLQFASLSFDASVEEIFG-ALLAG-------ATLVVPPEDEERDDAALLAA 206

Query: 343 ASVLRP-TVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGL 401
                P TV+   P++L                    L   A    L+            
Sbjct: 207 LIAEHPVTVLNLTPSLLA-------------------LLAAALPPALA------------ 235

Query: 402 EKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADT-QRFINICLGAPIGQGYGLTETCAG 460
                               +R ++ GG  L+     R+     GA +   YG TET   
Sbjct: 236 -------------------SLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVW 276

Query: 461 GTFSEVDDSSVGR-----VGAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNV 512
            T + VD     R     +G PL  + + ++D  +        P+P    GE+ I GP V
Sbjct: 277 STATLVDPDDAPRESPVPIGRPLANTRLYVLD-DDLR------PVPVGVVGELYIGGPGV 329

Query: 513 TVGYFKNEEKTKEVYKVDD----KGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEY 568
             GY    E T E +  D      G R + TGD+ +   DG LE + R  D VK+  G  
Sbjct: 330 ARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI-RGYR 388

Query: 569 VSLGKVEAALIVSPYVDN 586
           + LG++EAAL+  P V  
Sbjct: 389 IELGEIEAALLRHPGVRE 406

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score =  122 bits (308), Expect = 1e-29
 Identities = 132/553 (23%), Positives = 186/553 (33%), Gaps = 177/553 (32%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           LTY +  E     A+ L  LG +  + VA++     + + A             I A L 
Sbjct: 17  LTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAA-------------ILACL- 62

Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
                                        +G        + +D + P+         R  
Sbjct: 63  ----------------------------KAG-----AAYVPLDPSQPAE--------RIA 81

Query: 227 ITSFADVQILGRENP----VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV 282
                  +IL    P     D D     D+A I++TSGSTG PKGV ++H N+ + +   
Sbjct: 82  -------KILEAAGPAALVADPD-----DLAYILFTSGSTGKPKGVQISHANLASFL-DW 128

Query: 283 MTIVPDLGSKDVYLAYLPLA---HVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGT 339
           M    DL   DV+    P +    V +L           A+  G  L +      I K  
Sbjct: 129 MVEDFDLTEGDVFSNQAPFSFDLSVFDLFP---------ALASGATLYV------IPKEQ 173

Query: 340 QGDASVL-------RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAIN 392
             D   L         TV  SVP+                                  +N
Sbjct: 174 IADPLALFEFLKEHGLTVWVSVPSFAS------------------------LLLLSRELN 209

Query: 393 GSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADT-----QRFINICLGAP 447
                     + L +L  F              L  G  L         +RF N    A 
Sbjct: 210 ---------PESLPSLRTF--------------LFCGEVLPKKLAKALRRRFPN----AR 242

Query: 448 IGQGYGLTETCAGGTFSEVDDSSVGR-----VGAPLPCSFIKLIDWPEGGYLTSDSPMPR 502
           I   YG TE     T  EV    + R     +G P P     ++D  E G          
Sbjct: 243 IINLYGPTEATVAVTAYEVTPEPLSRNEPLPIGYPKPGLRALILD--EDGRPVPPG--EE 298

Query: 503 GEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVK 562
           GE+VIAGP V+ GY  N EKT + +   D+G RW+ TGD+  +  DG L  + RK   +K
Sbjct: 299 GELVIAGPQVSPGYLNNPEKTAKAF-FQDEGQRWYRTGDLVYLEDDGLLVYLGRKDFQIK 357

Query: 563 LQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQGIVGKN 622
           L HG  + L ++EAAL   P V+             V L V     V    A   +VGK 
Sbjct: 358 L-HGYRIELEEIEAALRALPGVEE-----------AVVLPVPKGEKVVRLVAF--VVGKE 403

Query: 623 ARLDKFEIPAKIK 635
             LD   +  ++K
Sbjct: 404 GALDTKALKKELK 416

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  120 bits (303), Expect = 3e-29
 Identities = 110/538 (20%), Positives = 183/538 (34%), Gaps = 126/538 (23%)

Query: 108 TYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGE 167
           T+        + A  L   G +   RVA+      E  + L  C      +         
Sbjct: 1   TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAM------- 53

Query: 168 EALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKI 227
             L   L E E T  +        L D             ++     A S          
Sbjct: 54  --LNTRLTENERTNQLEDLDVQLLLTDS-----------LLEEKDFQADSLDR------- 93

Query: 228 TSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP 287
              A       E  + A + +   +A +M+TSG+TG PK V  T  N  A+       + 
Sbjct: 94  IEAAGR----YETSLSASFNMD-QIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLG 148

Query: 288 DLGSKDVYLAYLPLAHVLELVAENLIAGVG---SAIGYGTPLTLTDTSSKIKKGTQGDAS 344
                D +L  LPL H         I+G+      +  G  L + D  +++ +    +  
Sbjct: 149 -FTEDDNWLLSLPLYH---------ISGLSILFRWLIEGATLRIVDKFNQLLEMIANE-- 196

Query: 345 VLRPTVMAS-VPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEK 403
                   S VP  L+R+                                       L++
Sbjct: 197 ---RVTHISLVPTQLNRL---------------------------------------LDE 214

Query: 404 LLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTF 463
              N              +R IL GG+ + A          G PI   YG+TETC+  T 
Sbjct: 215 GGHNE------------NLRKILLGGSAIPAPLIE-EAQQYGLPIYLSYGMTETCSQVTT 261

Query: 464 SEVDDS-SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEK 522
           +  +   +   VG PL    IK+           D+    GEI++ G N+  GY    E 
Sbjct: 262 ATPEMLHARPDVGRPLAGREIKI---------KVDNKEGHGEIMVKGANLMKGYLYQGEL 312

Query: 523 TKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSP 582
           T      + +G  WF TGD+G++  +G L ++ R+ D++ +  GE +   ++E  L   P
Sbjct: 313 TP---AFEQQG--WFNTGDIGELDGEGFLYVLGRRDDLI-ISGGENIYPEEIETVLYQHP 366

Query: 583 YVDNIMMHADP---FHSYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLL 637
            +   ++   P   +    VA +V+        +  + I     +L K+++P   + L
Sbjct: 367 GIQEAVVVPKPDAEWGQVPVAYIVSESD----ISQAKLIAYLTEKLAKYKVPIAFEKL 420

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  120 bits (303), Expect = 8e-29
 Identities = 130/605 (21%), Positives = 210/605 (34%), Gaps = 157/605 (25%)

Query: 54  WEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAF 113
           W    TL +L   +   H D+            T V D  R            LTY +  
Sbjct: 12  WGDQ-TLGDLLAANAARHPDR------------TAVVDGPRR-----------LTYRELD 47

Query: 114 ETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYS 173
             +   A+GL  LG    +RV +     AE+ +     F+     V    +         
Sbjct: 48  AAVDRLAAGLLALGIGPGDRVLVQLPNVAEFVILYFALFKLGAIPVLALPAHRA------ 101

Query: 174 LNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADV 233
               E+                + Q +   ++I                 R+    F D 
Sbjct: 102 ---HEIG-------------HFARQSEAKAYIIA---------------DRFS--GF-DY 127

Query: 234 QILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKD 293
             L RE  +  + P   DVA+   + G+TGLPK +  TH + L +  A       L    
Sbjct: 128 AALARE--LLEELP---DVALFQLSGGTTGLPKLIPRTHNDYLYSARASAEAC-GLDPGT 181

Query: 294 VYLAYLPLAHVLELVAENLI--AGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVM 351
           VYLA LP AH   L +  L+     G  +    P +       I++         + T  
Sbjct: 182 VYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHHPPSPDVAFPLIERE--------KVTHT 233

Query: 352 ASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVF 411
           A VPA+L+                                       W LE   W+    
Sbjct: 234 ALVPALLN--------------------------------------LW-LEAAEWDQADL 254

Query: 412 SKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTE-TCAGGTFSEVDDSS 470
           S +R I          GGAPLS +  R +   LG P+ Q +G+ E         +  D  
Sbjct: 255 SSLRVIQ--------VGGAPLSPELARRVEERLGCPLQQVFGMAEGLVNYTRLDDPPDVI 306

Query: 471 VGRVGAPLPCSF--IKLID-----WPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT 523
           +   G P+      I+++D      P G           GE++  GP    GY++  E  
Sbjct: 307 MRTQGRPI-SPADEIRIVDDQGEPVPPGEV---------GELLTRGPYTIRGYYRAPEHN 356

Query: 524 KEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPY 583
              +   D G  ++ TGD+ ++ ADG   ++ R KD +  + GE +S  ++E  L+  P 
Sbjct: 357 ARAF--TDDG--FYRTGDLVRIDADGYYRVVGRIKDQIN-RGGEKISPEEIENLLLSHPA 411

Query: 584 VDN--IMMHADPF--HSYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLL-S 638
           V +  ++   D       C  +V     A      +  +  +   L KF++P +++++ S
Sbjct: 412 VADAAVVGMPDEVLGERICAFVVPRGGAAPTLAELRAFLREQG--LAKFKLPDRLEVVDS 469

Query: 639 YPWTS 643
            P T 
Sbjct: 470 LPLTP 474

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score =  118 bits (299), Expect = 4e-28
 Identities = 125/491 (25%), Positives = 187/491 (38%), Gaps = 126/491 (25%)

Query: 107 LTYGQAFETICNFASGLAQ-LGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASL 165
           ++Y +  E     A  L Q  G +K +RV ++     ++ +A     R N  VV +    
Sbjct: 36  ISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMN 95

Query: 166 GEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVIC------MDANIPSAVSS- 218
            EE L + + ++     I GS+   K+    G L  ++HVI       + A    AV + 
Sbjct: 96  REEELAHYVTDSGARVAIVGSELAPKVAPAVGNL-RLRHVIVAQYSDYLPAEPEIAVPAW 154

Query: 219 ------VEQSGRWKITSFADVQILGRENPVDADYPVSA---DVAVIMYTSGSTGLPKGVM 269
                 ++      + ++ +    G   P     P +A   D+AV+ YTSG+TG+PKG M
Sbjct: 155 LRAEPPLQALAPGGVVAWKEALAAGLAPP-----PHTAGPDDLAVLPYTSGTTGVPKGCM 209

Query: 270 MTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLT 329
            TH  V+A     +    +   + V LA LPL HV  +V       + + I  G  + L 
Sbjct: 210 HTHRTVMANAVGSVLWS-NSTPESVVLAVLPLFHVTGMV-----HSMNAPIYAGATVVLM 263

Query: 330 DTSSKIKKGTQGDA-SVLRPTVMASVPAILDRVRDGVRKKVD--AKGGLSKKLFDLAYAR 386
               +  +          R T   ++P ++          VD  A  GL++   DL    
Sbjct: 264 ---PRWDREAAARLIERYRVTHWTNIPTMV----------VDFLASPGLAE--RDL---- 304

Query: 387 RLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPL-SADTQRFINICLG 445
                                    S +R I GG        GA +  A  +R   +  G
Sbjct: 305 -------------------------SSLRYIGGG--------GAAMPEAVAERLKELT-G 330

Query: 446 APIGQGYGLTET---------------CAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPE 490
               +GYGLTET               C G     VD     RV           ID PE
Sbjct: 331 LDYVEGYGLTETMAQTHSNPPDRPKLQCLGIPTFGVD----ARV-----------ID-PE 374

Query: 491 GGYLTSDSPMPR---GEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHA 547
                    +P    GEIV+ GP V  GY+   E T E +   D G R+F TGD+G++  
Sbjct: 375 TL-----EELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEID-GKRFFRTGDLGRMDE 428

Query: 548 DGCLEIIDRKK 558
           +G   I DR K
Sbjct: 429 EGYFFITDRLK 439

Length = 546

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  114 bits (288), Expect = 5e-27
 Identities = 62/166 (37%), Positives = 84/166 (50%), Gaps = 9/166 (5%)

Query: 422 IRFILSGGAPLSADTQ-RFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPC 480
           +R I SG APLS + Q           I QGYG+TET    T +   D   G VG  +P 
Sbjct: 265 LRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTPPGDEKPGSVGRLVPN 324

Query: 481 SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTG 540
              K++D  +GG   S  P  RGE+ + GP +  GY  N E TKE    D     W +TG
Sbjct: 325 VEAKIVD-EDGG--KSLGPNERGELCVKGPQIMKGYLNNPEATKETIDEDG----WLHTG 377

Query: 541 DVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDN 586
           D+G    DG   I+DRKK+++K + G  V   ++EA L+  P V +
Sbjct: 378 DIGYFDEDGNFYIVDRKKELIKYK-GYQVPPAELEAVLLEHPKVAD 422

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  111 bits (280), Expect = 9e-27
 Identities = 77/254 (30%), Positives = 111/254 (43%), Gaps = 40/254 (15%)

Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSV---GRVGAP 477
           R+RFI S  APL       +    G P+ + YG+TE  A    S      V   G VG P
Sbjct: 119 RLRFIRSASAPLPPAVLDRLEKRFGVPVLEAYGMTEA-AHQIASNPLPPLVRKPGSVGRP 177

Query: 478 LPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWF 537
                + ++D  +G  L    P   GEIVI GPNVT GY  N E  +E ++       WF
Sbjct: 178 AGVE-VAILD-DDGRPL---PPGQEGEIVIRGPNVTAGYLNNPEANREAFR-----DGWF 227

Query: 538 YTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSY 597
            TGD+G +  DG L +  R K+++  + GE +S  +VE  L+  P V   ++   P   Y
Sbjct: 228 RTGDLGYLDEDGYLFLTGRIKELIN-RGGEKISPREVEEVLLRHPAVAEAVVFGVPDELY 286

Query: 598 --CVALVVASQP-------AVEEWAAKQGIVGKNARLDKFEIPAKIKLLS-YPWTSEAGL 647
              VA  V  +         + ++A K        RL  F++P KI  +   P       
Sbjct: 287 GEEVAAAVVLRADSKVTIEELRDFARK--------RLAAFKVPKKILFVDALP------- 331

Query: 648 VTAALKIKREAIRK 661
             A  KI+R  + +
Sbjct: 332 KGATGKIQRRKLAE 345

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score =  113 bits (284), Expect = 1e-26
 Identities = 107/405 (26%), Positives = 154/405 (38%), Gaps = 100/405 (24%)

Query: 241 PVDADYPV------------------SADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV 282
           P+D  YP                     D+A ++YTSGSTG PKGV ++H  ++  + + 
Sbjct: 66  PLDPSYPAERLQYMLEDAEPALLLTDPDDLAYVIYTSGSTGKPKGVEVSHRALVNFLLS- 124

Query: 283 MTIVPDLGSKDVYLAYLPLA---HVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGT 339
           M   P LG+ D  LA   ++    VLEL+                PL             
Sbjct: 125 MARRPGLGASDRLLAVTTISFDISVLELL---------------LPLLS----------- 158

Query: 340 QGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAW 399
              A+V    V+AS     + VRD  R                  AR ++    +   A 
Sbjct: 159 --GATV----VIASA----ETVRDPER-----------------LARLIADERITIMQA- 190

Query: 400 GLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCA 459
                 W +L+ +  R          L GG  L  D    +    GA +   YG TET  
Sbjct: 191 --TPATWRMLLAAGWRGRESLTA---LCGGEALPRDLAERLLST-GAELWNMYGPTETTI 244

Query: 460 GGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNVTVG 515
             T + V        +G P+  + + ++D      L    P+P    GE+ I G  V  G
Sbjct: 245 WSTCARVTAADGPVTIGRPIANTQVYVLD----EDLQ---PVPPGVPGELYIGGDGVARG 297

Query: 516 YFKNEEKTKEVYKVD---DKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLG 572
           Y    E T E +  D   D G R + TGD+ +   DG LE + R  D VK+  G  + LG
Sbjct: 298 YLGRPELTAERFVPDPFDDPGGRLYRTGDLVRWRPDGRLEYLGRADDQVKI-RGFRIELG 356

Query: 573 KVEAALIVSPYVDN---IMMHADPFHSYCVALVVASQPAVEEWAA 614
           ++EAAL   P V +   ++    P     VA VV    A  +  A
Sbjct: 357 EIEAALRAHPGVADAVVVVREEGPGDQRLVAYVVPKAGAAPDAEA 401

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  110 bits (277), Expect = 2e-25
 Identities = 68/253 (26%), Positives = 99/253 (39%), Gaps = 46/253 (18%)

Query: 59  TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
           TL EL  ++ +  GDK                   +            LTY +    +  
Sbjct: 6   TLPELLARAARRFGDK------------EAYVFGDQR-----------LTYAELNARVRR 42

Query: 119 FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVV---TIYASLGEEALCYSLN 175
            A+ LA LG  K +RVAI+A     W +A  G  +    VV   T Y    +EA  Y L 
Sbjct: 43  AAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYT--ADEA-AYILA 99

Query: 176 ETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQI 235
             +   +      L      + +L  ++HV+  +       +        K+ +F D   
Sbjct: 100 RGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTE-------KMKTFTDFLA 152

Query: 236 LG----RENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGS 291
            G    R   VD D     DVA I++TSG+TG PKG M+TH  +L+  +     +  L  
Sbjct: 153 AGDPAERAPEVDPD-----DVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-GLTE 206

Query: 292 KDVYLAYLPLAHV 304
            D YLA  P  HV
Sbjct: 207 GDRYLAANPFFHV 219

Length = 513

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  110 bits (276), Expect = 3e-25
 Identities = 104/481 (21%), Positives = 157/481 (32%), Gaps = 94/481 (19%)

Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
              + LTY +        A  L  LG    E VAI AD   E  VAL    +     V +
Sbjct: 248 RGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPL 307

Query: 162 YASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQ 221
                 E L Y L ++  T ++  +  L+        L     +  +    P   + +  
Sbjct: 308 DPLYPAERLAYILEDSRPTLLLTQA-HLRVDDVGLPGLALDDALSEIPDTDPIPQALL-- 364

Query: 222 SGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281
                                         +A I+YTSGSTG PKGV + H  +   ++ 
Sbjct: 365 ---------------------------GDALAYIIYTSGSTGQPKGVRIEHRALANLLND 397

Query: 282 VMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQG 341
                  L + D  LA   L+                                       
Sbjct: 398 AGARFG-LDADDRVLALASLSF-------------------------------------- 418

Query: 342 DASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGL 401
           DASV          A L      ++            L +L  A+ ++ +          
Sbjct: 419 DASVFEIFGALLEGARLVLAPALLQV-------DPAALLELLEAQGITVLL--LVPLLLR 469

Query: 402 EKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADT--QRFINICLGAPIGQGYGLTETCA 459
             LL  L            R+R +LSGG  L      +      L   +   YG TE   
Sbjct: 470 LLLLAALAPD---LISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATL 526

Query: 460 GGTFSEVDDSSVGRV--GAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYF 517
                 +      RV  G P+  + + ++D      L        GE+ IAG  + +GY 
Sbjct: 527 DAPSFPISAELESRVPIGRPVANTQLYILD----QGLRPLPLGVPGELYIAGLGLALGYL 582

Query: 518 KNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAA 577
              + T E +       R + TGD+ +  ADG LE + RK   VK++ G  + LG++EAA
Sbjct: 583 NRPDLTAERFIAL----RLYRTGDLARPLADGALEYLGRKDSQVKIR-GFRIELGEIEAA 637

Query: 578 L 578
           L
Sbjct: 638 L 638

Length = 642

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  106 bits (268), Expect = 2e-24
 Identities = 54/200 (27%), Positives = 92/200 (46%), Gaps = 10/200 (5%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           LT+    +     A GL +LG K+ + VA+ +    E+     GC      V     S  
Sbjct: 11  LTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYT 70

Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
            + L + L  ++   + C   EL K+ + + +L  V  +I +D+  P  V  +E     +
Sbjct: 71  PDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDSA-PDGVLRIEDLLEPR 129

Query: 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV 286
           + +  + +     +  D       D A ++Y+SG+TGLPKGVM++H N++A +S V   +
Sbjct: 130 LGAEDEFRPTPLIDGKD-------DTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQDTL 182

Query: 287 PD--LGSKDVYLAYLPLAHV 304
                 S DV L +LP  H 
Sbjct: 183 KGNPDSSNDVVLTFLPFYHA 202

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score =  106 bits (267), Expect = 3e-24
 Identities = 137/567 (24%), Positives = 211/567 (37%), Gaps = 110/567 (19%)

Query: 118 NFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNET 177
           + A  L + G    +RVA+   + AE+ VAL    R ++ VV +  +L            
Sbjct: 55  DLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAA 114

Query: 178 EVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILG 237
               V         L+D  G  D  +         P  V+    SG    T    +    
Sbjct: 115 GARVV---------LIDADGPHDRAEPTT---RWWPLTVNVGGDSGPSGGTLSVHLDAAT 162

Query: 238 RENPV-DADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL 296
              P       +  D A+IM+T G+TGLPK V  TH N+ ++V A++T    L  +D  +
Sbjct: 163 EPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-RLSPRDATV 221

Query: 297 AYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPA 356
           A +PL H        LIA + + +  G                    +VL P        
Sbjct: 222 AVMPLYH-----GHGLIAALLATLASG-------------------GAVLLP-------- 249

Query: 357 ILDRVRDGVRKKVDAKGGLSKKLF--DLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKV 414
                         A+G  S   F  D+       A+  +W+ A  +  +   LL  +  
Sbjct: 250 --------------ARGRFSAHTFWDDIK------AVGATWYTA--VPTIHQILLERAAT 287

Query: 415 RAILGGR--IRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDS--- 469
                    +RFI S  APL+A+T + +     AP+   +G+TE     T ++++     
Sbjct: 288 EPSGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQT 347

Query: 470 -----SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK 524
                S G VG          I   +G  L + +    GE+ + G  V  GY  +   T 
Sbjct: 348 ENPVVSTGLVGRSTGAQI--RIVGSDGLPLPAGAV---GEVWLRGTTVVRGYLGDPTITA 402

Query: 525 EVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
             +        W  TGD+G + A G L I  R K+++  + GE +S  +VE  L   P V
Sbjct: 403 ANFTDG-----WLRTGDLGSLSAAGDLSIRGRIKELIN-RGGEKISPERVEGVLASHPNV 456

Query: 585 DNIMMHADPFHSY--CVALVV----ASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLS 638
               +   P   Y   VA V+    ++ P  EE            RL  FEIPA  +  S
Sbjct: 457 MEAAVFGVPDQLYGEAVAAVIVPRESAPPTAEELVQFC-----RERLAAFEIPASFQEAS 511

Query: 639 -YPWTSEAGLVTAALKIKREAIRKAFA 664
             P T++  L        R A+ + F 
Sbjct: 512 GLPHTAKGSL-------DRRAVAEQFG 531

Length = 534

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  105 bits (264), Expect = 4e-24
 Identities = 145/571 (25%), Positives = 228/571 (39%), Gaps = 143/571 (25%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           L+Y Q ++ +   A  L  LG K   R+A+  D   +W +A   C +  +  + I     
Sbjct: 3   LSYQQLWQEVDLLAEQLRALGVK---RIALALDNSIDWVIADLACLQAGIVCIPIPHFFS 59

Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
            +   + LN+     +I          D +  L T                         
Sbjct: 60  AQQTQHLLNDAGADLLISDDP------DAASALHTPFA---------------------- 91

Query: 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV 286
            T   D+ I  R +    + P  A  A I YTSGSTG PKGV ++    L TV+  +   
Sbjct: 92  -TLGEDLYIALRPSANPVELP--AGTAKITYTSGSTGQPKGVCLSAAA-LETVAQSLAEA 147

Query: 287 PDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVL 346
             +   + +L  LPLA +LE    N IAGV     Y  PL +            G   +L
Sbjct: 148 IAILEPERHLCLLPLATLLE----N-IAGV-----Y-APLLM------------GATVIL 184

Query: 347 RPTVMASVPAILDRVRDGVRKKVDAKGGLS-KKLFDLAYARRLSAINGSWFGAWG----- 400
            P  +A +                   GLS     D A  + ++A++      W      
Sbjct: 185 VP--LAEL-------------------GLSGSSGLDPA--QFVAALS-----RWQPHSLI 216

Query: 401 -LEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSAD-TQRFINICLGAPIGQGYGLTETC 458
            + +LL  L+   +   +    +RF+  GGA +S    QR     LG P+ +GYGL+E C
Sbjct: 217 LVPQLLMALVAAVEQGPLPPESLRFVAVGGARVSPSLLQRARA--LGLPVYEGYGLSE-C 273

Query: 459 AGGTFSEV-----DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVT 513
           A    S V          G VG PLP   + + +               GEI++ G ++ 
Sbjct: 274 A----SVVSLNTPGADRPGSVGKPLPHVQVSIAN--------------DGEILVRG-SLM 314

Query: 514 VGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGK 573
           +GY      T +          W+ TGD+G +  +G L I  RKK+++    G  VS   
Sbjct: 315 LGYLGEPPATDD----------WWATGDLGHLDEEGYLYINGRKKNLIITSFGRNVSPEW 364

Query: 574 VEAALIVSPYVDNIMMHAD--PFHSYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIP 631
           VE+ L  +P +   ++  D  PF    VAL+V +    ++   +  +   NA+L  +   
Sbjct: 365 VESELQQAPAIAQAVVFGDAQPF---LVALIVPAPNISDD-QLEAAVQQINAQLPDY--- 417

Query: 632 AKIK---LLSYPWTSEAGLVTAALKIKREAI 659
           A+IK    L  P+++  GL+TA  + +R AI
Sbjct: 418 ARIKTWVRLRQPFSTANGLLTANGRPRRAAI 448

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score =  106 bits (266), Expect = 5e-24
 Identities = 129/521 (24%), Positives = 181/521 (34%), Gaps = 168/521 (32%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIY---- 162
           LTY +        A+ L  LG    +RV + A    ++  A  GC       V       
Sbjct: 24  LTYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRR 82

Query: 163 ASLGEEALCYSLNETEVTTVICGSKELKKL-VDLSGQLDTVKHVICMDANIPSAVSSVEQ 221
                  L   L +     V+  S  L  L   L+     +  +I  D        +   
Sbjct: 83  LGRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAALLLLLIAADD------LAALA 136

Query: 222 SGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281
           +  W            R  P D D     D+A + YTSGSTG PKGVM+THGN+LA + A
Sbjct: 137 AADW------------RPPPPDPD-----DIAFLQYTSGSTGAPKGVMVTHGNLLANLRA 179

Query: 282 VMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQG 341
           +      L   DV +++LPL H +      LI G+   +  G P+ L    + ++     
Sbjct: 180 IARAF-GLDPDDVGVSWLPLYHDM-----GLIGGLLQPLYAGFPVVLMSPLAFLR----- 228

Query: 342 DASVLRP------------TVMASVP-----AILDRVRDGVRKKVDAKGGLSKKLFDLAY 384
                RP            TV  + P       + RVRD      +   GL     DL  
Sbjct: 229 -----RPLRWLEAISRYRATVSGA-PNFAYDLCVRRVRD------EQLAGL-----DL-- 269

Query: 385 ARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADT-----QRF 439
                                      S  R           +G  P+ ADT     +RF
Sbjct: 270 ---------------------------SSWRVAF--------NGAEPVRADTLERFAERF 294

Query: 440 INICLGAPIG-------QGYGLTETC---------AGGTFSEVDDSSVGRVGA------- 476
                 AP G         YGL E           AG     VD  ++ R GA       
Sbjct: 295 ------APAGFRPEAFLPCYGLAEATLAVSGGPPGAGPVVLRVDRDALARGGAAVAAADG 348

Query: 477 -----------PLPCSFIKLIDWPEGGYLTSDSPMPRGE---IVIAGPNVTVGYFKNEEK 522
                      PLP   ++++D PE        P+P GE   I + GP+V  GY+   E 
Sbjct: 349 AAARELVSCGRPLPGHEVRIVD-PETR-----RPLPDGEVGEIWVRGPSVAAGYWNRPEA 402

Query: 523 TKEV--YKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
           T E    ++      W  TGD+G +H DG L +  R KD++
Sbjct: 403 TAETFGARLATDEGGWLRTGDLGFLH-DGELYVTGRLKDLI 442

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  103 bits (259), Expect = 7e-24
 Identities = 80/315 (25%), Positives = 123/315 (39%), Gaps = 61/315 (19%)

Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATV-SAVMTIVPDLGSKDVYLAYLPLAHVLELVA 309
           D+A   +T G+TG PK    +H N +A    A +     LG  DV L  LPL HV   + 
Sbjct: 3   DLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLS--GLGPGDVLLNGLPLFHVGGAIV 60

Query: 310 ENLIA-GVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKK 368
             L     G+ +   TP    + +  +           R T++++VP +L  +       
Sbjct: 61  TGLAPLARGATVVLPTPSGFRNPA--VVANFWKIVERYRVTLLSAVPTVLAALLQ--VPL 116

Query: 369 VDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSG 428
            DA         D+                             S +R        + L+G
Sbjct: 117 GDA---------DI-----------------------------SSLR--------YALTG 130

Query: 429 GAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLID 487
            APL  +  R      G P+ +GYG+TE       +        G VG  LP + +++  
Sbjct: 131 AAPLPVEVARRFEAVTGVPVVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYTRVRVAK 190

Query: 488 WPEGGYLTSD-SPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVH 546
              GG L  D +P   G + I GPNV  GY  +        +++D    W  TGD+G++ 
Sbjct: 191 LDAGGALGRDCAPGEVGVLAIRGPNVFPGYLNDAHNAG--ARLED---GWLNTGDLGRID 245

Query: 547 ADGCLEIIDRKKDIV 561
           ADG L +  R KD++
Sbjct: 246 ADGYLWLTGRAKDLI 260

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score =  105 bits (263), Expect = 9e-24
 Identities = 116/497 (23%), Positives = 182/497 (36%), Gaps = 114/497 (22%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           LTYG+  E +  + + L +LG ++E RV +      E+  A  G  +     V I   L 
Sbjct: 31  LTYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLT 90

Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
            +   Y LN++    ++   +  + L     +   ++HVI            V  +G   
Sbjct: 91  PDDYRYYLNDSRARVLVISEELWEVLKPALQKDPHLRHVI-----------VVGGAGPGA 139

Query: 227 ITSFADVQILGRENPVDADYPVSA-DVAVIMYTSGSTGLPKGVMMTHGNVLATVSA---- 281
             S+A  Q++            SA D+A  +Y+SGSTG PKGV+  H ++L T  A    
Sbjct: 140 -LSYA--QLIATAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEAYAKN 196

Query: 282 VMTIVPD---LGSKDVYLAY-------LPLAHVLELVAENLIAGVG-SAIGYGTPLTLTD 330
           V+ I  D     +  ++ AY        PL              VG + +      T   
Sbjct: 197 VLGITEDDVVFSAAKLFFAYGLGNGLYFPL-------------SVGATTVLMPERPTPDA 243

Query: 331 TSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSA 390
             + I++         +PTV   VP +                          YA  L+A
Sbjct: 244 VFATIERY--------KPTVFFGVPTL--------------------------YAAMLAA 269

Query: 391 INGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADT-QRFINICLGAPIG 449
                                S +R          +S G  L A+   R+  +  G  I 
Sbjct: 270 PE-------------KPERDLSSLRL--------CVSAGEALPAEIGYRWKEL-FGLEIL 307

Query: 450 QGYGLTETCAGGTF--SEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVI 507
            G G TE      F  +       G  G P+P   +KL+D  +G  +        GE+ +
Sbjct: 308 DGIGSTE--MLHIFLSNRPGAVKYGTSGKPVPGYEVKLVD-EDGEEVADGEI---GELWV 361

Query: 508 AGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGE 567
            G +   GY+   EKT+E +  +     W  TGD      DG      R  D++K+  G 
Sbjct: 362 RGDSSAAGYWNRREKTRETFVGE-----WTRTGDKYYRDEDGYYWYCGRSDDMLKVS-GI 415

Query: 568 YVSLGKVEAALIVSPYV 584
           +VS  +VE AL+  P V
Sbjct: 416 WVSPFEVEDALLQHPAV 432

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score =  101 bits (255), Expect = 6e-23
 Identities = 105/416 (25%), Positives = 153/416 (36%), Gaps = 115/416 (27%)

Query: 241 PVDADYPV------------------SADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV 282
           P+D  YP                     D+A ++YTSGSTG PKGVM+ H  ++  ++ +
Sbjct: 66  PLDPAYPAERLAYMLEDSGAKLLLTDPDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWL 125

Query: 283 MTIVPDLGSKDVYLAYLPL---AHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGT 339
                 L + D  L +      A V E+    L++G        T L L           
Sbjct: 126 QERYG-LTAGDRVLQFASFSFDASVWEIFPP-LLSG-------AT-LVLAP------PEV 169

Query: 340 QGDASVL-------RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAIN 392
             D   L       R TV+  VP++L  + D +                L   R +    
Sbjct: 170 LRDPEALAELLREHRITVLHLVPSLLRALLDALEPA------------ALPSLRLV---- 213

Query: 393 GSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGY 452
               G    E L   L    + R +  G                 R +N          Y
Sbjct: 214 --IVGG---EALPAEL--VRRWRELFPGA----------------RLVN---------AY 241

Query: 453 GLTETCAGGTFSEVDDSSVGR----VGAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEI 505
           G TET    T+ EVD   +      +G P+  + + ++D  E        P+P    GE+
Sbjct: 242 GPTETTVDVTYHEVDPDDLDGGSVPIGRPIANTRVYVLD--EDL-----RPVPVGVPGEL 294

Query: 506 VIAGPNVTVGYFKNEEKTKEVYKVDD----KGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
            I G  V  GY    E T E + V D     G R + TGD+ +   DG LE + R  D V
Sbjct: 295 YIGGAGVARGYLNRPELTAERF-VPDPFGGPGERLYRTGDLARWLPDGNLEFLGRADDQV 353

Query: 562 KLQHGEYVSLGKVEAALIVSPYVDN--IMMHADPF-HSYCVALVVASQPAVEEWAA 614
           K+  G  + LG++EAAL+  P V    ++   D       VA VV +  A  + A 
Sbjct: 354 KI-RGYRIELGEIEAALLAHPGVREAVVVAREDGAGEKRLVAYVVPAAGAELDAAE 408

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score =  102 bits (257), Expect = 8e-23
 Identities = 112/459 (24%), Positives = 172/459 (37%), Gaps = 106/459 (23%)

Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL-GSKDVYLAYLPLAHVLELVA 309
            VA  ++TSGSTGLPK V+ TH  + A  + +    P L     V + +LP  H      
Sbjct: 165 TVAKYLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLTEEPPVLVDWLPWNHTF---G 221

Query: 310 ENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLR------PTVMASVPAILDRVRD 363
            N        +  G  L + D     K         LR      PTV  +VP   + + D
Sbjct: 222 GNHN--FNMVLYNGGTLYIDDG----KPVPGLFEETLRNLREVSPTVYFNVPKGFEMLVD 275

Query: 364 GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIR 423
            + +  DA   L ++ F     +RL  +    +    L + +W+ L    VR   G RI 
Sbjct: 276 ALER--DA--ALRRRFF-----KRLRLLF---YAGAALPQDVWDRLQALAVRT-TGERIP 322

Query: 424 FILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFI 483
                                      G G TET    TF        G +G P P + +
Sbjct: 323 MT------------------------SGLGATETAPTATFVHWPTDRSGVIGLPAPGTEL 358

Query: 484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVG 543
           KL+  P GG L         E+ + GPNVT GY+++ E T E +  D++G  ++  GD  
Sbjct: 359 KLV--PNGGKL---------EVRVKGPNVTPGYWRDPELTAEAF--DEEG--FYRIGDAV 403

Query: 544 Q-VHADGCLEIIDRKKDIV---------KLQHGEYVSLGKVEAALI--VSPYVDNIMMHA 591
           + V  D      D ++ +V         KL  G +VS+G +  AL+  ++P V + ++ A
Sbjct: 404 RFVDPD------DPERGLVFDGRVAEDFKLASGTWVSVGALRVALVAALAPLVQDAVV-A 456

Query: 592 DPFHSYCVALVVASQPAVEEWAA-------------------KQGIVGKNARLDKFEIPA 632
                    LV  +  A    A                       +   N          
Sbjct: 457 GHDRDEIGLLVFPNLAACRRLAGLAEASAEDVLAHPAVREALAARLAAHNRAATGSTRVT 516

Query: 633 KIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLY 671
           +  LL+ P + +AG +T    I + A+    A  + RLY
Sbjct: 517 RALLLAEPPSIDAGEITDKGYINQRAVLARRAALVERLY 555

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score =  101 bits (252), Expect = 2e-22
 Identities = 115/484 (23%), Positives = 189/484 (39%), Gaps = 88/484 (18%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           L+YG+    +    + L +LG K+EERV +      ++ +A  G  R  +  V +   L 
Sbjct: 31  LSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLT 90

Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
            +   Y L ++    V    + L  +    G+   ++H +         V    ++G  +
Sbjct: 91  ADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRV---------VVGRPEAGEVQ 141

Query: 227 ITSF-ADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI 285
           +    A      +     AD     D A  +Y+SGSTG+PKGV+ TH N   T       
Sbjct: 142 LAELLATESEQFKPAATQAD-----DPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARN 196

Query: 286 VPDLGSKDVYL--AYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDA 343
              +   DV    A L  A+           G+G+A+ +  P+++            G  
Sbjct: 197 TLGIREDDVVFSAAKLFFAY-----------GLGNALTF--PMSV------------GAT 231

Query: 344 SVL---RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWG 400
           +VL   RPT     P                       +FD     RL     + F  +G
Sbjct: 232 TVLMGERPT-----PD---------------------AVFD-----RLRRHQPTIF--YG 258

Query: 401 LEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAG 460
           +  L   +L    + A    R+R   S G  L A+  +      G  I  G G TE    
Sbjct: 259 VPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHI 318

Query: 461 GTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNE 520
              +   D   G  G P+P   ++L+   +GG   +      GE++I+GP+    Y+ N 
Sbjct: 319 FLSNLPGDVRYGTSGKPVPGYRLRLVG--DGGQDVAAGEP--GELLISGPSSATMYWNNR 374

Query: 521 EKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIV 580
            KT++ ++ +     W  +GD    + DG      R  D++K+  G YVS  ++E+ALI 
Sbjct: 375 AKTRDTFQGE-----WTRSGDKYVRNDDGSYTYAGRTDDMLKVS-GIYVSPFEIESALIQ 428

Query: 581 SPYV 584
            P V
Sbjct: 429 HPAV 432

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 98.7 bits (246), Expect = 1e-21
 Identities = 134/581 (23%), Positives = 227/581 (39%), Gaps = 133/581 (22%)

Query: 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQ-GCFRRNVTVVTIYA 163
            W TY +    +   A+ L + G    ER+A+ A     W VAL   C R    V  IY 
Sbjct: 22  RW-TYAELDALVGRLAAVLRRRGCVDGERLAVLARNSV-WLVALHFACAR----VGAIYV 75

Query: 164 SLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSG 223
            L      + L+ +E+  ++                D    ++  D  +         +G
Sbjct: 76  PLN-----WRLSASELDALLQ---------------DAEPRLLLGDDAV--------AAG 107

Query: 224 RWKITSFAD-VQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVS-- 280
           R  +   A  +       P D        V++I++TSG++G PKGVM++  N+  T    
Sbjct: 108 RTDVEDLAAFIASADALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNF 167

Query: 281 AVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDT-SSKIKKGT 339
            V+  V    +   +L   P+ H++      LI  V   +  G  + +++    K   G 
Sbjct: 168 GVLGRV---DAHSSFLCDAPMFHII-----GLITSVRPVLAVGGSILVSNGFEPKRTLGR 219

Query: 340 QGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAW 399
            GD + L  T    VP +    R              +  FD A  R L+A+        
Sbjct: 220 LGDPA-LGITHYFCVPQMAQAFRA-------------QPGFDAAALRHLTAL-------- 257

Query: 400 GLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCA 459
                                      +GGAP +A+      +  G P+  G+G++E  A
Sbjct: 258 --------------------------FTGGAPHAAEDILGW-LDDGIPMVDGFGMSE--A 288

Query: 460 GGTF-----SEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSP--MPRGEIVIAGPNV 512
           G  F      +V  +  G  G P P    +++D        +D P  +P GE+++ GPN+
Sbjct: 289 GTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVDDQG-----NDCPAGVP-GELLLRGPNL 342

Query: 513 TVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLG 572
           + GY++  + T   +  D     WF TGD+ +  ADG   ++DRKKD+  +  GE V   
Sbjct: 343 SPGYWRRPQATARAFTGDG----WFRTGDIARRDADGFFWVVDRKKDMF-ISGGENVYPA 397

Query: 573 KVEAALIVSPYVDN--IMMHADPFH---SYCVALVVASQPA-VEEWAAKQGIVGKNARLD 626
           ++EA L   P +    ++  AD       Y   +     P  +E   +         RL 
Sbjct: 398 EIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIRSHLS-----TRLA 452

Query: 627 KFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDL 667
           K+++P  ++L+      +A   TA+ K+++  +R A A   
Sbjct: 453 KYKVPKHLRLV------DALPRTASGKLQKARLRDALAAGR 487

Length = 488

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 98.5 bits (246), Expect = 1e-21
 Identities = 92/349 (26%), Positives = 138/349 (39%), Gaps = 99/349 (28%)

Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAE 310
           D+A I ++SGSTG PKGV++TH N+L  + A +    ++ S+DV+L+++PL H + L+  
Sbjct: 107 DIAFIQFSSGSTGEPKGVILTHKNLLTNIEA-IIEAAEITSEDVFLSWMPLTHDMGLIGF 165

Query: 311 NLIAGVGSAIGYGTPLTLTDTSSKIKKGTQ--GDASVLRPTVMASVPAILDRVRDGVRKK 368
           +L          G    L  T   I++       AS  R T+++S P             
Sbjct: 166 HLT-----PTALGINQYLMPTRLFIRRPLLWLDKASQHRATILSS-P------------- 206

Query: 369 VDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSG 428
                       +  Y   L          W L          S VR         I +G
Sbjct: 207 ------------NFGYKYLLKHFKTEKIIDWDL----------SSVR--------LIFNG 236

Query: 429 GAPLSADT-QRFINICLGAPIG-------QGYGLTETCAGGTFSEVDDS----SVGR--- 473
             P+SAD  + F+     AP G         YGL E     +F +  +      + R   
Sbjct: 237 AEPISADLCEEFLEKM--APFGLRPNAMYPVYGLAEATLAVSFPKPGEPFKTVCLDRNHL 294

Query: 474 ---------------------VGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNV 512
                                VG+P+    I+++D  + G +  D  +  G I I G NV
Sbjct: 295 KVGVKIIEIDPKNSDAISFVEVGSPIDGCEIRIVD--DAGEVLPDRTI--GHIQIKGDNV 350

Query: 513 TVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
           T GY+ N E TK+    D     W  TGD+G +  +G L I  R KDI+
Sbjct: 351 TSGYYNNPEATKKSITPD----GWLKTGDLGFLR-NGRLVITGRAKDII 394

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 98.4 bits (246), Expect = 1e-21
 Identities = 137/578 (23%), Positives = 202/578 (34%), Gaps = 139/578 (24%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           LTYG+        A+ L   G    + VA+      E  VA+ G        V I     
Sbjct: 13  LTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQP 72

Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
            E     L       V+                                   + Q     
Sbjct: 73  AERRAAILARAGARAVL-------------------------------TDPGLAQPEEAP 101

Query: 227 ITSFADVQILGRENPVDADYPVSA-DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI 285
                       E+P      V   D+A +++TSGSTG PKGVM+TH        A +  
Sbjct: 102 DLLVVADDAAAAESPAPPPPRVDPDDLAYVIFTSGSTGEPKGVMITH-------RAAVNT 154

Query: 286 VPD------LGSKDVYLAYLPLAH---VLELVAENLIAGVGSAIGYGTPLTLTDTSSKIK 336
           + D      +G  D  LA   L     V +      I G  SA   G  L L D +    
Sbjct: 155 ILDVNRRFGVGPADRVLALSALHFDLSVYD------IFGALSA---GAALVLPDEAR--- 202

Query: 337 KGTQGDASVL-------RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLS 389
              + D             TV  SVPA++D +       +      ++ L  L    RL 
Sbjct: 203 ---RRDPDHWAELVQRHGVTVWNSVPALMDML-------LTYAEDAARLLPSL----RLV 248

Query: 390 AINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIG 449
            ++G W                  +   L  R+R +  G   +S          LG    
Sbjct: 249 MLSGDW------------------IPLDLPRRLRALAPGARLVS----------LG---- 276

Query: 450 QGYGLTETCAGGTFSEVDDSSVGRV----GAPLPCSFIKLIDWPEGGYLTSDSP--MPRG 503
              G TE      +  +DD          G PLP     ++D  E G    D P  +P G
Sbjct: 277 ---GATEASIWSIYYPIDDVDPDWRSIPYGKPLPNQKFYVLD--EDG---RDCPDWVP-G 327

Query: 504 EIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKL 563
           E+ I G  V +GY+ + E T E +     G R + TGD+G+   DG +E + R    VK+
Sbjct: 328 ELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGRADHQVKI 387

Query: 564 QHGEYVSLGKVEAALIVSPYVDNIMM--HADPFHSYCVALVVASQPAVEEWAAKQGIVGK 621
           + G  V LG++EAAL   P V   ++    D       A VVA   A  + A  +  +  
Sbjct: 388 R-GYRVELGEIEAALARHPGVQRAVVVVVGDGGAKALAAFVVAEDGAAVDAAVLRAALA- 445

Query: 622 NARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAI 659
              L  + +P++  +L      +A  +TA  K+ R+A+
Sbjct: 446 -ELLPAYMVPSRFVVL------DALPLTANGKVDRKAL 476

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 97.7 bits (244), Expect = 3e-21
 Identities = 59/210 (28%), Positives = 85/210 (40%), Gaps = 21/210 (10%)

Query: 99  LHLGEYEWLTYGQAFETICN-FASGLAQLGHKKEERVAIFADTRAEW-FVALQ-GCFRRN 155
           L  G+  W TY +  +   N  A+ L  LG KK +RVA          +  L   C R  
Sbjct: 30  LVFGDRSW-TYAE-LDAAVNRVAAALLDLGLKKGDRVAALG--HNSDAYALLWLACARAG 85

Query: 156 VTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSA 215
              V +   L  E L Y L+ +     +           L+   +    ++ +D  I S 
Sbjct: 86  AVHVPVNFMLTGEELAYILDHSGARAFLVDP-------ALAPTAEAALALLPVDTLILSL 138

Query: 216 VSS-VEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGN 274
           V    E  G W    FAD                  D+A I+YTSG+  LPKG M+TH  
Sbjct: 139 VLGGREAPGGW--LDFADWA-EAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRA 195

Query: 275 VLAT-VSAVMTIVPDLGSKDVYLAYLPLAH 303
           ++A  VS +  +  D+ + D+ L  LPL H
Sbjct: 196 LIAEYVSCI--VAGDMSADDIPLHALPLYH 223

Length = 523

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 97.9 bits (244), Expect = 3e-21
 Identities = 53/162 (32%), Positives = 77/162 (47%), Gaps = 8/162 (4%)

Query: 400 GLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCA 459
           GL  L   L      R +    ++  LSGG  L   T        G  I +GYG+TET  
Sbjct: 306 GLNTLFVALCNNEAFRKLDFSALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSP 365

Query: 460 GGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKN 519
             + +      VG +G P+P +  K+ID  +G  L        GE+ + GP V  GY++ 
Sbjct: 366 VVSVNPSQAIQVGTIGIPVPSTLCKVID-DDGNELPLGEV---GELCVKGPQVMKGYWQR 421

Query: 520 EEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
            E T E+  +D  G  W  TGD+  +  DG + I+DRKKD++
Sbjct: 422 PEATDEI--LDSDG--WLKTGDIALIQEDGYMRIVDRKKDMI 459

Length = 562

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 96.4 bits (240), Expect = 6e-21
 Identities = 63/200 (31%), Positives = 94/200 (47%), Gaps = 15/200 (7%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           LTY    E +   ASGL  LG  + ERVAI+ D R E   A+ G        V I   L 
Sbjct: 26  LTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLK 85

Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSS-VEQSGRW 225
            E + + L +  V  ++  S+ L  L         ++ +I +     ++     E+   W
Sbjct: 86  AEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLIIVGDPAHASEGHPGEEPASW 145

Query: 226 KITSFADVQILGRENPVDADYP---VSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV 282
                  +  LG     DAD P   + +D+A I+YTSGSTG PKGV+++H N++A   +V
Sbjct: 146 -----PKLLALG-----DADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSV 195

Query: 283 MTIVPDLGSKDVYLAYLPLA 302
            T + +    D  LA LPL+
Sbjct: 196 ATYL-ENRPDDRLLAVLPLS 214

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 97.3 bits (243), Expect = 1e-20
 Identities = 57/148 (38%), Positives = 70/148 (47%), Gaps = 23/148 (15%)

Query: 445  GAPIGQGYGLTETC-----------AGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGY 493
            G  I +GYG TET            A     +   S  G VG PLP   ++++D PE   
Sbjct: 923  GIRILEGYGATETSPVASVNLPDVLAADFKRQTG-SKEGSVGMPLPGVAVRIVD-PETF- 979

Query: 494  LTSDSPMPRGE---IVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGC 550
                  +P GE   I+I GP V  GY  + EKT EV K D  G+ W+ TGD G +  DG 
Sbjct: 980  ----EELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIK-DIDGIGWYVTGDKGHLDEDGF 1034

Query: 551  LEIIDRKKDIVKLQHGEYVSLGKVEAAL 578
            L I DR     K+  GE V LG VE  L
Sbjct: 1035 LTITDRYSRFAKIG-GEMVPLGAVEEEL 1061

Length = 1146

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 95.1 bits (236), Expect = 2e-20
 Identities = 115/479 (24%), Positives = 189/479 (39%), Gaps = 95/479 (19%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           +T+    + +  FA+ L +LG +K +RVAI      +  +   G       VV       
Sbjct: 50  ITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYT 109

Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICM------------------ 208
           E  L Y L+++    ++C      ++ ++      ++HVI                    
Sbjct: 110 ERELEYQLHDSGAKVILCLDLVFPRVTNVQSA-TKIEHVIVTRIADFLPFPKNLLYPFVQ 168

Query: 209 --DANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPK 266
              +N+   VS  E    W   S       G E P D +     D+A++ YT G+TG PK
Sbjct: 169 KKQSNLVVKVSESETIHLW--NSVEKEVNTGVEVPCDPE----NDLALLQYTGGTTGFPK 222

Query: 267 GVMMTHGNVLA-TVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTP 325
           GVM+TH N+++ T+  V  +      ++V L  LP  HV                 YG  
Sbjct: 223 GVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHV-----------------YGMT 265

Query: 326 LTLTDTSSKIKKGTQGDASVLRPTVMASVPAI-LDRVRDGVRK-KVDAKGGLSKKLFDLA 383
             +             + S+++   M  +P   +  V + ++K KV         LF  A
Sbjct: 266 AVM-------------NLSIMQGYKMVLIPKFDMKMVFEAIKKHKV--------TLFPGA 304

Query: 384 YARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC 443
               ++ +N      + +          S +RA + G         APL  + Q      
Sbjct: 305 PTIYIALLNSPLLKEYDI----------SSIRACISG--------SAPLPVEVQEKFETV 346

Query: 444 LGAPIGQGYGLTETCAGGTFSEVDDSSV-GRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR 502
            G  + +GYGLTE+      + + +  V G +G P P +   ++    G  L    P   
Sbjct: 347 TGGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEAL---PPGEI 403

Query: 503 GEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
           GEIV+ GP +  GY+   E+T  V +       W +TGDVG +  DG   + DRKKD++
Sbjct: 404 GEIVVKGPQIMKGYWNKPEETAAVLQDG-----WLHTGDVGYMDEDGFFYVKDRKKDMI 457

Length = 563

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 94.3 bits (235), Expect = 2e-20
 Identities = 89/347 (25%), Positives = 133/347 (38%), Gaps = 87/347 (25%)

Query: 250 ADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA----VMTIVPD---LGSKDVYLAYLPLA 302
            D+A  +YTSG+TG PKGVM  H + L    A    ++ + P      S  ++ AY  L 
Sbjct: 91  DDIAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFARELLGLQPGDRIFSSSKLFFAY-GLG 149

Query: 303 HVLELVAENLIAGVGSAI---GYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILD 359
           + L      L +G  SA+   G+ TP  + D  ++            RPTV+  VPA+  
Sbjct: 150 NSL---LFPLFSG-ASAVLLPGWPTPEAVLDLLAR-----------HRPTVLFGVPALYR 194

Query: 360 RVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILG 419
            + +         G  S  LF                                       
Sbjct: 195 ALLES--------GAGSAPLF--------------------------------------- 207

Query: 420 GRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTF--SEVDDSSVGRVGAP 477
             +R  +S G  L A          G  I  G G TE      F  +    +  G  G P
Sbjct: 208 RSVRLCVSAGEALPAGLAERWAEATGIEILDGIGSTE--VLHIFISNRPGAARPGTTGRP 265

Query: 478 LPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWF 537
           +P    +L+D   G  + + +    G++ + GP++  GY+   EKT+   +    G  W 
Sbjct: 266 VPGYEARLVD-ESGREVPAGTV---GDLWVRGPSLAPGYWNLPEKTQRTLR---DG--WL 316

Query: 538 YTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
            TGD     ADG      R  D++K+  G++VS  +VEAAL   P V
Sbjct: 317 RTGDRFSRDADGWYRYQGRADDMIKVS-GQWVSPLEVEAALGEHPAV 362

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 91.3 bits (227), Expect = 3e-19
 Identities = 63/257 (24%), Positives = 106/257 (41%), Gaps = 43/257 (16%)

Query: 54  WEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADN-GRSFEKLHLGEYEWLTYGQA 112
           + G ++LA+ ++Q+ +   DK              V DN G S+           TY   
Sbjct: 19  YWGDASLADYWQQTARAMPDK------------IAVVDNHGASY-----------TYSAL 55

Query: 113 FETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCY 172
                  A+ L   G +  +RVA       E+ +    C +     V +  S  E  L +
Sbjct: 56  DHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVW 115

Query: 173 SLNETEVTTVICGSKE-----LKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKI 227
            LN+ +       +       +  ++ L  QL  ++ ++ +D   P A SS+  S     
Sbjct: 116 VLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAP-ATSSLSLS----- 169

Query: 228 TSFADVQILGRENPVDADYPVSAD-VAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV 286
                 QI+    P+        D +A +++TSG+ GLPKGVM+TH N+LA+  A     
Sbjct: 170 ------QIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERA-YCAR 222

Query: 287 PDLGSKDVYLAYLPLAH 303
            +L  +DV++   PL H
Sbjct: 223 LNLTWQDVFMMPAPLGH 239

Length = 547

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 89.2 bits (222), Expect = 4e-19
 Identities = 58/217 (26%), Positives = 96/217 (44%), Gaps = 24/217 (11%)

Query: 452 YGLTETCAGGTF---SEVDD--SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIV 506
           YGLTE     T+    E+D    S+G+    +P   + ++D  +G      +P   GE+V
Sbjct: 150 YGLTE-AFRSTYLPPEELDRRPDSIGK---AIPNVELWVVD-EDGNRC---APGEVGELV 201

Query: 507 IAGPNVTVGYFKNEEKTKEVYK-VDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQH 565
             G NV  GY+ + E T E  +     G    YTGD+ ++  +G L  + RK D++K + 
Sbjct: 202 HRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKDDMIKTR- 260

Query: 566 GEYVSLGKVEAALIVSPYVDN--IMMHADPFHSYCVALVVASQPAVEEWAAKQGIVGKNA 623
           G  VS  ++E  +   P V    ++   DP     +  VV S    E    K+ +     
Sbjct: 261 GYRVSPTEIEEVICAHPLVAEAAVIGVPDPLLGQAIVAVVVSADG-ESLDEKELLKHCRK 319

Query: 624 RLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIR 660
            L  + +PA+I  +      ++    A  K+ R A+R
Sbjct: 320 HLPNYMVPAEIVFV------DSLPKNANGKVDRSALR 350

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 89.7 bits (223), Expect = 6e-19
 Identities = 108/461 (23%), Positives = 160/461 (34%), Gaps = 117/461 (25%)

Query: 133 RVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKL 192
           RVA+ A       +A+ G     V VV +    G     + L ++              L
Sbjct: 47  RVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAERRHILADSGAQAW---------L 97

Query: 193 VDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADV 252
                    + HV                           V++  R      + P     
Sbjct: 98  GPAPDDPAGLPHV--------------------------PVRLHARSWHRYPE-PDPDAP 130

Query: 253 AVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI---VPDLGSKDVYLAYLPLAHVLELVA 309
           A+I+YTSG+TG PKGV+++   + A + A+        D    DV +  LPL HV     
Sbjct: 131 ALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTAD----DVLVHGLPLFHV----- 181

Query: 310 ENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRP--TVMASVPAILDRVRDGVRK 367
             L+ GV   +  G     T      +   +  A  L    T+   VP +  R+      
Sbjct: 182 HGLVLGVLGPLRIGNRFVHT-----GRPTPEAYAQALSEGGTLYFGVPTVWSRIAA---- 232

Query: 368 KVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILS 427
                        D   AR L        GA                        R ++S
Sbjct: 233 -------------DPEAARALR-------GA------------------------RLLVS 248

Query: 428 GGAPLSA-DTQRFINICLGAPIGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLPCSFIKL 485
           G A L      R   +  G    + YG+TET      +  D +   G VG PL     +L
Sbjct: 249 GSAALPVPVFDRLAALT-GHRPVERYGMTETLIT-LSTRADGERRPGWVGLPLAGVETRL 306

Query: 486 IDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQV 545
           +D  +GG +  D     GE+ + GP +  GY    + T   +  D     WF TGDV  V
Sbjct: 307 VD-EDGGPVPHD-GETVGELQVRGPTLFDGYLNRPDATAAAFTADG----WFRTGDVAVV 360

Query: 546 HADGCLEIIDRKK-DIVKLQHGEY-VSLGKVEAALIVSPYV 584
             DG   I+ R+  D++K   G Y +  G++E AL+  P V
Sbjct: 361 DPDGMHRIVGRESTDLIKS--GGYRIGAGEIETALLGHPGV 399

Length = 471

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 89.5 bits (223), Expect = 9e-19
 Identities = 74/228 (32%), Positives = 109/228 (47%), Gaps = 35/228 (15%)

Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPC 480
            +R  +SG APL A+T R      G  I + YG+TET    +     +   G VG PLP 
Sbjct: 270 HMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYDGERRAGTVGFPLPG 329

Query: 481 SFIKLIDWPEGGYLTSDSPMPRGE---IVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWF 537
             +++ D PE G     + +P GE   I + GPNV  GY++  EKT E ++ D     +F
Sbjct: 330 VSLRVTD-PETG-----AELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADG----FF 379

Query: 538 YTGDVGQVHADGCLEIIDRKKDIV---------KLQHGEYVSL-GKVEAALIVSPYVDNI 587
            TGD+G++   G + I+ R KD++         K   GE   L G VE+A+I  P     
Sbjct: 380 ITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVP----- 434

Query: 588 MMHADPFHSYCVALVVASQPA-VEEWAAKQGIVGKNARLDKFEIPAKI 634
             H D F     A+VV    A ++E A    +     RL +F+ P ++
Sbjct: 435 --HPD-FGEGVTAVVVPKPGAALDEAAILAAL---KGRLARFKQPKRV 476

Length = 504

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 88.9 bits (221), Expect = 1e-18
 Identities = 53/163 (32%), Positives = 78/163 (47%), Gaps = 5/163 (3%)

Query: 422 IRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCS 481
           ++ +  GGA L       +    G    +GYGLTET     F+  D      +G P+  +
Sbjct: 201 LKVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFNPPDRPKPQCLGIPVFGT 260

Query: 482 FIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGD 541
             ++ID PE G      P   GEIV+ GP V  GY+   E T E + ++  G R+F TGD
Sbjct: 261 DARVID-PETGEELP--PGEEGEIVVRGPQVFKGYWNRPEATAESF-IELDGKRFFRTGD 316

Query: 542 VGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
           +G +  +G    +DR K ++ +  G  V   +VEA L   P V
Sbjct: 317 LGYIDEEGYFFFLDRVKRMINVS-GYKVWPAEVEALLYQHPAV 358

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 89.6 bits (223), Expect = 1e-18
 Identities = 148/631 (23%), Positives = 227/631 (35%), Gaps = 154/631 (24%)

Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
           G +  LTY +A E +   A  L   G   E  + I +    E  +         V    +
Sbjct: 65  GGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPV 124

Query: 162 YASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQL--------DTVKHVICMDANIP 213
             +       YSL           S++  KL  +   L        D       + A +P
Sbjct: 125 SPA-------YSLV----------SQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP 167

Query: 214 SA---VSSVEQSGRWKITSFADVQILGRENPVDADYP-VSAD-VAVIMYTSGSTGLPKGV 268
           +    V+          T FA +        VDA +  V  D +A  ++TSGSTGLPK V
Sbjct: 168 ADVEVVAVRGAVPGRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAV 227

Query: 269 MMTHGNVLATVSAVMTIVPDLGS-KDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLT 327
           + TH  + A    +    P L     V + +LP  H       N    +G  +  G  L 
Sbjct: 228 INTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTF---GGNHN--LGIVLYNGGTLY 282

Query: 328 LTDTSSKIKKGTQG--DASV--LR---PTVMASVPAILDRVRDGVRKKVDAKGGLSKKLF 380
           + D      K T G  D ++  LR   PTV  +VP   + +   + +  DA   L ++ F
Sbjct: 283 IDD-----GKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALER--DA--ALRRRFF 333

Query: 381 DLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFI 440
                 RL  +   ++    L + +W+ L         G RIR +               
Sbjct: 334 -----SRLKLL---FYAGAALSQDVWDRLDRVAEATC-GERIRMM--------------- 369

Query: 441 NICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPM 500
                     G G+TET    TF+    S  G +G P P   +KL+  P GG L      
Sbjct: 370 ---------TGLGMTETAPSATFTTGPLSRAGNIGLPAPGCEVKLV--PVGGKL------ 412

Query: 501 PRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQ-VHADGCLEIIDRKKD 559
              E+ + GPNVT GY++  E T E +  D++G  ++ +GD  + V         D ++ 
Sbjct: 413 ---EVRVKGPNVTPGYWRAPELTAEAF--DEEG--YYRSGDAVRFVDPA------DPERG 459

Query: 560 IV---------KLQHGEYVSLGKVEAALI--VSPYV----------DNIMMHADPFHSYC 598
           ++         KL  G +VS+G + A  +   +P V          D I +   P    C
Sbjct: 460 LMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRDEIGLLVFPNLDAC 519

Query: 599 VALV----------VASQPAVEEWAAKQGIVGKNARLDKFE--------IPAKIKLLSYP 640
             L           V + PAV              RL +            A+  LL  P
Sbjct: 520 RRLAGLLADASLAEVLAHPAVRAAFR--------ERLARLNAQATGSSTRVARALLLDEP 571

Query: 641 WTSEAGLVTAALKIKREAIRKAFADDLARLY 671
            + +AG +T    I + A+    A  +  LY
Sbjct: 572 PSLDAGEITDKGYINQRAVLARRAALVEALY 602

Length = 614

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 88.4 bits (219), Expect = 2e-18
 Identities = 65/191 (34%), Positives = 96/191 (50%), Gaps = 17/191 (8%)

Query: 451 GYGLTETCAGGTFSEV--DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIA 508
            YGLTETC+G T  E   +   +G  G  L    I++ D   G +L    P  +GEI + 
Sbjct: 296 AYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-GAGRWL---PPNMKGEICMR 351

Query: 509 GPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEY 568
           GP VT GY+K+ EKT E +   D    WF +GDVG +  +G L + DRKKD++ +  GE 
Sbjct: 352 GPKVTKGYWKDPEKTAEAF-YGD----WFRSGDVGYLDEEGFLYLTDRKKDMI-ISGGEN 405

Query: 569 VSLGKVEAALIVSPYVDN---IMMHADPFHSYCVALVVASQPAVEEWAAKQGIVGKNARL 625
           ++  +VE  +   P V     I +H D +     A+VV +  A     A         RL
Sbjct: 406 IASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLTLEALDRHC--RQRL 463

Query: 626 DKFEIPAKIKL 636
             F++P ++K+
Sbjct: 464 ASFKVPRQLKV 474

Length = 497

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 86.9 bits (216), Expect = 5e-18
 Identities = 68/261 (26%), Positives = 104/261 (39%), Gaps = 43/261 (16%)

Query: 421 RIRFILSGGAPLSADTQ-------RFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGR 473
            +R ++ GG               R +N          YG TE     T S +       
Sbjct: 209 SLRTLILGGEACPQALVDRWSKPRRLLN---------TYGPTEATVTATASRLTPGKPVN 259

Query: 474 VGAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNVTVGYFKNEEKTKEVYKVD 530
           +G PLP     ++D         +  +P    GE+ I GP V  GY    E T E +  D
Sbjct: 260 IGRPLPNYTCWVLD------PDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAEKFIPD 313

Query: 531 -----DKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVD 585
                + G R + TGD+ +   DG LE + RK D VK+  G+ + LG++EA L   P V 
Sbjct: 314 PFWLNNPGGRIYRTGDLVRYLEDGSLEFLGRKDDQVKI-RGQRIELGEIEAVLRALPGVV 372

Query: 586 N---IMMHADPFHSYCVALVVASQPAVEEWAAKQGIVGK---NARLDKFEIPAKIKLLSY 639
               +++  DP     VA +     A  E A     + +     RL  + +P+    L  
Sbjct: 373 VAAVVLLLDDPGGKQLVAFLAVDGAAGGEPADVDIALLRSALRERLPSYMVPSVYVPLDE 432

Query: 640 PWTSEAGLVTAALKIKREAIR 660
                   +TA+ K+ R+A+R
Sbjct: 433 L------PLTASGKVDRKALR 447

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 85.1 bits (211), Expect = 2e-17
 Identities = 110/498 (22%), Positives = 157/498 (31%), Gaps = 140/498 (28%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           LT+ +  E     A GL   G +K +RV +     A+        F+     V I   +G
Sbjct: 3   LTFRELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDPGMG 62

Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
                               K L +               C++   P A   +       
Sbjct: 63  -------------------RKHLGR---------------CLEEAEPDAFIGI------- 81

Query: 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV 286
                               P + D A I++TSGSTG PKGV+ TH    A + A+ ++ 
Sbjct: 82  --------------------PKADDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLY 121

Query: 287 PDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGT--QGDAS 344
             +   D  LA  P   +          GV + I    P                +  AS
Sbjct: 122 G-IREGDRDLAAFPPFALF-----GPALGVTTVIPAMDPTAPAALDPAKLAQAIREIGAS 175

Query: 345 VLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKL 404
                V  S PA+L  V                                     +  E  
Sbjct: 176 C----VFGS-PALLKNVAR-----------------------------------YCEE-- 193

Query: 405 LWNLLVFSKVRAILGGRIRFILSGGAPLSADT-QRFINICL-GAPIGQGYGLTET--CAG 460
             N +    +R         +LS GAP+  D  +RF+   +  A I   YG TE    A 
Sbjct: 194 --NGIQLPSLRR--------VLSAGAPVPPDLLRRFVANLMPEAEIHTPYGATEALPVAS 243

Query: 461 GTFSEV-----DDSSVGR---VGAPLP---CSFIKLIDWP--EGGYLTSDSPMPRGEIVI 507
               EV     +    G    VG P+P      I + D P           P   GEI++
Sbjct: 244 IEGREVLAESAEPPEAGAGVCVGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIV 303

Query: 508 AGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGE 567
           +GP+VT  Y+   E TK + K+ D    W   GD+G     G L    RK   V+   G 
Sbjct: 304 SGPHVTREYYNRPEATK-LAKISDGNRIWHRMGDLGYFDDQGRLWFCGRKAHRVETAGGT 362

Query: 568 YVSLGKVEAALIVSPYVD 585
             ++  VE      P V 
Sbjct: 363 LFTVP-VEQVFNRHPGVR 379

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 84.6 bits (209), Expect = 4e-17
 Identities = 88/352 (25%), Positives = 155/352 (44%), Gaps = 81/352 (23%)

Query: 250 ADVAVIMYTSGSTGLPKGVMMTHGNVLATV-SAVMTIVPDLGSKDVYLAYLPLAHVLELV 308
            D+  + ++SG+TG+ KGVM+TH N++A + S++ ++ P++  + V L  +P  H+    
Sbjct: 184 TDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYG-- 241

Query: 309 AENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASV-------PAILDRV 361
               I G+  A       TL +    +        + L   +   V       P IL+ V
Sbjct: 242 ----ITGICCA-------TLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLV 290

Query: 362 RDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGR 421
           ++ + ++ D                              L KL        K++AI    
Sbjct: 291 KNPIVEEFD------------------------------LSKL--------KLQAI---- 308

Query: 422 IRFILSGGAPLSAD-TQRFINICLGAPIGQGYGLTE-TCAGGTFSEVDD----SSVGRVG 475
               ++  APL+ +    F     G  + + YGLTE +C   T  + +     +    VG
Sbjct: 309 ----MTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVG 364

Query: 476 APLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMR 535
             LP   +K ID   G  L  ++P   GE+ +    V  GY+ N+E+T     +D+ G  
Sbjct: 365 FILPNLEVKFIDPDTGRSLPKNTP---GELCVRSQCVMQGYYNNKEETDRT--IDEDG-- 417

Query: 536 WFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNI 587
           W +TGD+G +  DG + I+DR K+++K + G  V+  ++EA L+  P V++ 
Sbjct: 418 WLHTGDIGYIDDDGDIFIVDRIKELIKYK-GFQVAPAELEAILLTHPSVEDA 468

Length = 546

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score = 83.8 bits (208), Expect = 7e-17
 Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 11/114 (9%)

Query: 451 GYGLTETCAGGTFSEVDDSSV---GRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVI 507
           GYGL+E     TF+ +DD      G +G  +     K+++   G  +        GE+++
Sbjct: 313 GYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVN-ELGEEVPVGEV---GELLV 368

Query: 508 AGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
            GPNV  GY+ + E T      D     W +TGD+G++  +G L I+DRKKD+ 
Sbjct: 369 RGPNVMKGYYDDPEATAAAIDADG----WLHTGDLGRLDEEGYLYIVDRKKDMF 418

Length = 513

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 83.9 bits (208), Expect = 9e-17
 Identities = 148/680 (21%), Positives = 224/680 (32%), Gaps = 173/680 (25%)

Query: 55  EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFE 114
               ++  L  +   E  D+  L  R               + K+        TYG+A  
Sbjct: 46  PYPRSIPHLLAKWAAEAPDRPWLAQR---------EPGHGQWRKV--------TYGEAKR 88

Query: 115 TICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSL 174
            +   A  L  LG      V I +    E  +      +  V    +  +       YSL
Sbjct: 89  AVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPA-------YSL 141

Query: 175 NETEVTTVICGSKELKKLVDL---------SGQLDTVKHVICMDANIPSAVSSVEQSGRW 225
                        +LK L DL         SG     + +  +D    + V         
Sbjct: 142 MSH-------DHAKLKHLFDLVKPRVVFAQSGAPFA-RALAALDLLDVTVVHVTGPGEGI 193

Query: 226 KITSFADVQILGRENPVDADYPVSAD------VAVIMYTSGSTGLPKGVMMTHGNVLATV 279
              +FAD+       P  A    +        VA  ++TSGSTG+PK V+ T   + A +
Sbjct: 194 ASIAFADLAA----TPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANI 249

Query: 280 SAVMTIVPDLGSKD--VYLAYLPLAHVL---ELVAENLIAGVGSAIGYGTPL-------- 326
           +    + P        V L ++P  H +         L  G    I  G PL        
Sbjct: 250 AMQEQLRPREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETI 309

Query: 327 -TLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYA 385
             L + S               PTV  +VPA    + + + K    +    K L  +AY 
Sbjct: 310 RNLREIS---------------PTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYG 354

Query: 386 RRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLG 445
                      GA  L   L+  +    VR   G RI                       
Sbjct: 355 -----------GA-TLSDDLYERMQALAVRTT-GHRI----------------------- 378

Query: 446 APIGQGYGLTETCAGGTFSEV--DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRG 503
            P   GYG TET    T +    D   VG +G PLP   +KL   P G            
Sbjct: 379 -PFYTGYGATET--APTTTGTHWDTERVGLIGLPLPGVELKLA--PVGDKY--------- 424

Query: 504 EIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFY-TGDVGQVHADGCLEIIDRKKDIV- 561
           E+ + GPNVT GY K+ E T   +  D++G   FY  GD  +      ++  D +K ++ 
Sbjct: 425 EVRVKGPNVTPGYHKDPELTAAAF--DEEG---FYRLGDAARF-----VDPDDPEKGLIF 474

Query: 562 --------KLQHGEYVSLGKVEAALIV--SPYV----------DNIMMHADPFHSYCVAL 601
                   KL  G +VS+G +    +   SP +            I + A P  + C  L
Sbjct: 475 DGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAFIGLLAWPNPAACRQL 534

Query: 602 VVASQPAVEEWAAKQGIVGK-NARLDKF--EIP------AKIKLLSYPWTSEAGLVTAAL 652
                 A E+      ++      L     E        A+  L++ P + +AG +T   
Sbjct: 535 AGDPDAAPEDVVKHPAVLAILREGLSAHNAEAGGSSSRIARALLMTEPPSIDAGEITDKG 594

Query: 653 KIKREAIRKAFADDLARLYE 672
            I + A+ +  A  + RLY 
Sbjct: 595 YINQRAVLERRAALVERLYA 614

Length = 624

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 83.5 bits (207), Expect = 1e-16
 Identities = 60/184 (32%), Positives = 82/184 (44%), Gaps = 31/184 (16%)

Query: 418 LGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFS----EVDDSSVG- 472
           L   +R + +G  P  A  ++     LG  +   YGLTET    T      E D      
Sbjct: 280 LPRPVRVMTAGAPPPPAVIKKMEE--LGFEVTHVYGLTETYGPITVCEWKPEWDALPAEE 337

Query: 473 ------RVGAPLPCSF-IKLIDWPEGGYLTSDSPMPR-----GEIVIAGPNVTVGYFKNE 520
                 R G        + ++D PE         +PR     GEIV+ G  V  GY+KN 
Sbjct: 338 RARLKARQGVRYVGLEEVDVVD-PETM-----KDVPRDGKTIGEIVMRGNTVMKGYYKNP 391

Query: 521 EKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIV 580
           E T+E +     G  WF++GD+  VH DG +EI DR KDI+ +  GE +S  +VE  L  
Sbjct: 392 EATEEAFA---GG--WFHSGDLAVVHPDGYIEIKDRSKDII-ISGGENISSIEVEGVLYK 445

Query: 581 SPYV 584
            P V
Sbjct: 446 HPAV 449

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 83.1 bits (206), Expect = 1e-16
 Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 7/141 (4%)

Query: 423 RFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLPCS 481
           R+ L G APL  +  R      G  I +GYGLTE     + +  D +  +G VG  LP  
Sbjct: 336 RYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQ 395

Query: 482 FIK-LIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTG 540
            ++ +I    G YL   +    G + IAGPNV  GY       K ++ ++D    W  TG
Sbjct: 396 RVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYL-EAAHNKGLW-LED---GWLNTG 450

Query: 541 DVGQVHADGCLEIIDRKKDIV 561
           D+G++ ADG   +  R KD++
Sbjct: 451 DLGRIDADGYFWLTGRAKDLI 471

Length = 632

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 82.6 bits (204), Expect = 2e-16
 Identities = 79/248 (31%), Positives = 120/248 (48%), Gaps = 29/248 (11%)

Query: 393 GSW-FGAW-GLEKLLWNLLVFSKVRAILGGRIRFILSGGAPL-SADTQRFINICLGAPIG 449
           G W F A  GL  L   L+     + +    ++   SGG  L  A  +R+  +  G  I 
Sbjct: 304 GKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLTNSGGTALVKATAERWEQLT-GCTIV 362

Query: 450 QGYGLTETC-AGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPM-PRGEIVI 507
           +GYGLTET     T    + + +G VG P+P + +K+ID  +G  L    P+  RGE+ I
Sbjct: 363 EGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVID-DDGNEL----PLGERGELCI 417

Query: 508 AGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGE 567
            GP V  GY++  E T E   +D +G  WF TGD+  +  DG + I+DRKKD++ +  G 
Sbjct: 418 KGPQVMKGYWQQPEATAEA--LDAEG--WFKTGDIAVIDPDGFVRIVDRKKDLI-IVSGF 472

Query: 568 YVSLGKVEAALIVSPYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQGIVGKNARLDK 627
            V   ++E  ++  P V N           C A+ V  + + E  A K  +V ++  L  
Sbjct: 473 NVYPNEIEDVVMAHPKVAN-----------CAAIGVPDERSGE--AVKLFVVARDPGLSV 519

Query: 628 FEIPAKIK 635
            E+ A  K
Sbjct: 520 EELKAYCK 527

Length = 562

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 82.0 bits (203), Expect = 3e-16
 Identities = 73/220 (33%), Positives = 104/220 (47%), Gaps = 43/220 (19%)

Query: 422 IRFILSGGAPLSADTQRFINICL-GAPIGQGYGLTETCAGGTFS----------EVDDSS 470
           IR +LSG APL  + +      L  A +GQGYG+TE  AG   +           V   S
Sbjct: 300 IRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTE--AGPVLAMCLAFAKEPFPVKSGS 357

Query: 471 VGRV--GAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNVTVGYFKNEEKTKE 525
            G V   A L     K++D PE    T  S +PR   GEI I GP +  GY  + E T  
Sbjct: 358 CGTVVRNAEL-----KIVD-PE----TGAS-LPRNQPGEICIRGPQIMKGYLNDPEATAN 406

Query: 526 VYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVD 585
              +D  G  W +TGD+G +  D  L I+DR K+++K + G  V+  ++EA LI  P + 
Sbjct: 407 T--IDKDG--WLHTGDIGYIDDDDELFIVDRLKELIKYK-GFQVAPAELEALLISHPSIA 461

Query: 586 N---IMMHADPFHSYCVALVVASQ------PAVEEWAAKQ 616
           +   + M  +      VA VV S         ++++ AKQ
Sbjct: 462 DAAVVPMKDEVAGEVPVAFVVRSNGSEITEDEIKQFVAKQ 501

Length = 537

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 81.5 bits (202), Expect = 6e-16
 Identities = 65/270 (24%), Positives = 107/270 (39%), Gaps = 40/270 (14%)

Query: 49  LVSTSWE----GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADN-GRSFEKLHLGE 103
           L   SW+     +  LAE +  + K +                 VAD+ G          
Sbjct: 602 LSFDSWKSRKEALPPLAEAWIDTAKRNW------------SRLAVADSTGGE-------- 641

Query: 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYA 163
              L+YG+A       A  L +   K EE V I         +A           V +  
Sbjct: 642 ---LSYGKALTGALALARLLKRE-LKDEENVGILLPPSVAGALANLALLLAGKVPVNLNY 697

Query: 164 SLGEEALCYSLNETEVTTVICGSKELKKLVD--LSGQLDTVKHVICMDANIPSAVSSVEQ 221
           +  E AL  ++ + ++ TVI   K L+KL +     +L     VI ++ ++ + +S V++
Sbjct: 698 TASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLE-DLKAKISKVDK 756

Query: 222 SGRWKITSFADVQILGREN--PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATV 279
                       ++L R        D     D A I+++SGS G PKGVM++H N+L+ +
Sbjct: 757 LTALLAARLLPARLLKRLYGPTFKPD-----DTATIIFSSGSEGEPKGVMLSHHNILSNI 811

Query: 280 SAVMTIVPDLGSKDVYLAYLPLAHVLELVA 309
             +  +   L + DV L+ LP  H   L  
Sbjct: 812 EQISDVFN-LRNDDVILSSLPFFHSFGLTV 840

Length = 1146

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 79.9 bits (198), Expect = 6e-16
 Identities = 61/232 (26%), Positives = 94/232 (40%), Gaps = 51/232 (21%)

Query: 421 RIRFILSGGAP---LSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAP 477
            +RF+     P     A  +RF     G  + +GYG+TET      +  D +  G  G P
Sbjct: 197 PLRFVFGAPLPAAIWPAFEERF-----GVKLVEGYGMTETGVP-IIAPGDPAPPGSCGRP 250

Query: 478 LPCSFIKLIDWPEGGYLTSDSPMP---RGEIVI---AGPNVTVGYFKNEEKTKEVYKVDD 531
            P   ++++D  +         +P    GE+V+       +  GY+   E T +      
Sbjct: 251 RPGVEVRIVD-ED------GREVPPGEVGELVVRPRRPWAMFKGYYGMPEATAKA----- 298

Query: 532 KGMR--WFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMM 589
              R  WF+TGD G+   DG L  +DRKKD ++ + GE +S  +VEAA++  P V    +
Sbjct: 299 --WRNGWFHTGDRGRRDEDGFLYFVDRKKDAIRRR-GENISSYEVEAAILAHPAVAEAAV 355

Query: 590 HADPFHSY-------CVALV---VASQPAVEEWAAKQGIVGKNARLDKFEIP 631
            A P            V L         A+ E+           RL  F +P
Sbjct: 356 VAVP-SELGEDEVKAVVVLRPGETLDPEALLEFCR--------DRLPYFMVP 398

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 80.7 bits (199), Expect = 7e-16
 Identities = 119/513 (23%), Positives = 191/513 (37%), Gaps = 108/513 (21%)

Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
           G     +Y +    +   A GLA+LG  + + V+     R E+      C R    +  +
Sbjct: 49  GAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPL 108

Query: 162 YASLGEEALCYSLNETEVTTVIC-----GSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216
                E  L + LN  +    +      G        +L  +L  ++ V+ +D +   + 
Sbjct: 109 MPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSF 168

Query: 217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVL 276
             V  +     T  A   + G         P   DV  ++YTSG+TG PKGVM T   + 
Sbjct: 169 DRVLMTPERDDTPDAAAILAG-------PRPSPDDVTQLIYTSGTTGEPKGVMHTANTLF 221

Query: 277 ATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGT--PLTLTDTS-- 332
           + +      + +LG  DV L   P+AH              +   YG   PL L  T+  
Sbjct: 222 SNIHPYAERL-ELGGGDVILMASPMAHQ-------------TGFMYGLMMPLILNATAVL 267

Query: 333 SKIKKGTQGDASVLRPT----VMASVPAILDRVRDGVRKKVDAKGG--LSKKLFDLAYAR 386
             I    +  A ++R T     MAS P + D  R      V   G    S   F  A A 
Sbjct: 268 QDIWNPARA-AELIRETGVTFTMASTPFLTDLCR-----AVKESGAPVPSLFTFLCAGA- 320

Query: 387 RLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGA 446
               I G               ++  +   +LG  I         +SA            
Sbjct: 321 ---PIPG---------------ILVERAWELLGALI---------VSA------------ 341

Query: 447 PIGQGYGLTETCAGGTFSEVDDS---SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRG 503
                +G+TE     T +E DD+   +    G PLP   +K+ID        + + + +G
Sbjct: 342 -----WGMTE-NGAVTVTEPDDALEKASTTDGRPLPGVEVKVID-------ANGAKLSQG 388

Query: 504 EI---VIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDI 560
           E    ++ G +   GY K       +   D +G  WF TGD+    A+G + I  R KD+
Sbjct: 389 ETGRLLVRGCSNFGGYLKR----PHLNSTDAEG--WFDTGDLAFQDAEGYIRINGRSKDV 442

Query: 561 VKLQHGEYVSLGKVEAALIVSPYVDNIMMHADP 593
           + ++ GE + + ++E  L   P V  + + A P
Sbjct: 443 I-IRGGENIPVVEIENLLYQHPAVAQVAIVAYP 474

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 81.7 bits (202), Expect = 8e-16
 Identities = 129/574 (22%), Positives = 206/574 (35%), Gaps = 116/574 (20%)

Query: 107  LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
            L+Y +        A  L   G   +  V I  +   E  V L    +     V +     
Sbjct: 538  LSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYP 597

Query: 167  EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSV--EQSGR 224
            ++ L Y L+++ V  ++  S  L +L                   +P+ + S+  ++   
Sbjct: 598  QDRLAYMLDDSGVRLLLTQSHLLAQL------------------PVPAGLRSLCLDEPAD 639

Query: 225  WKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT 284
                    +      NP  A  P +  +A ++YTSGSTG PKGV ++HG  LA    V+ 
Sbjct: 640  L-------LCGYSGHNPEVALDPDN--LAYVIYTSGSTGQPKGVAISHGA-LANYVCVIA 689

Query: 285  IVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDAS 344
                L + D  L     A             +G    +G  L    T   +      DA 
Sbjct: 690  ERLQLAADDSMLMVSTFA-----------FDLGVTELFG-ALASGATLHLLPPDCARDA- 736

Query: 345  VLRPTVMASVPAILDRVRDGVRKKVDA--KGGLSKKLFDLAYARRLSAINGSWFGAWGLE 402
                    +  A++      V K V +  +  L      L   +R     G        E
Sbjct: 737  -------EAFAALMADQGVTVLKIVPSHLQALLQASRVALPRPQRALVCGG--------E 781

Query: 403  KLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGT 462
             L  +LL   +VRA+                    R IN          YG TET  G +
Sbjct: 782  ALQVDLLA--RVRAL----------------GPGARLINH---------YGPTETTVGVS 814

Query: 463  FSEVD----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFK 518
              E+     D     +G PL    + ++D     YL        GE+ I G  +  GY +
Sbjct: 815  TYELSDEERDFGNVPIGQPLANLGLYILD----HYLNPVPVGVVGELYIGGAGLARGYHR 870

Query: 519  NEEKTKEVYKVD---DKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVE 575
                T E +  D     G R + TGD+ +  ADG +E + R    VK++ G  + LG++E
Sbjct: 871  RPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIR-GFRIELGEIE 929

Query: 576  AALIVSPYVDNIMMHADP--FHSYCVALVVASQPAVEEWAAKQGIVGKNAR------LDK 627
            A L+  P V   ++ A P       VA +V +  A     A+        +      L  
Sbjct: 930  ARLLAQPGVREAVVLAQPGDAGLQLVAYLVPAAVAD---GAEHQATRDELKAQLRQVLPD 986

Query: 628  FEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRK 661
            + +PA + LL      ++  +T   K+ R+A+ K
Sbjct: 987  YMVPAHLLLL------DSLPLTPNGKLDRKALPK 1014

Length = 3956

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 80.6 bits (199), Expect = 8e-16
 Identities = 94/366 (25%), Positives = 134/366 (36%), Gaps = 104/366 (28%)

Query: 249 SADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELV 308
             D  +I +TSG+TG PKGV ++H  ++    A + IV   G  DVYL   PL H     
Sbjct: 171 PDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIV-GYGEDDVYLHTAPLCH----- 224

Query: 309 AENLIAGVGSAI------GYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVR 362
               I G+ SA+           L   D  + ++   Q +      T M +VPA++  + 
Sbjct: 225 ----IGGLSSALAMLMVGACHVLLPKFDAKAALQAIKQHNV-----TSMITVPAMMADLI 275

Query: 363 DGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRI 422
              RK +  K   S                                             +
Sbjct: 276 SLTRKSMTWKVFPS---------------------------------------------V 290

Query: 423 RFILSGGAPLSAD-TQRFINICLGAPIGQGYGLTETCAGGTFSEVDD------------- 468
           R IL+GG  LS+        +   A +   YG+TE C+  TF  + D             
Sbjct: 291 RKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTV 350

Query: 469 -----SSVGR-----VGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFK 518
                SSV +     VG P P   +K         +  D     G I+  GP+V +GY+ 
Sbjct: 351 NQTKSSSVHQPQGVCVGKPAPHVELK---------IGLDESSRVGRILTRGPHVMLGYWG 401

Query: 519 NEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAAL 578
              +T  V   D     W  TGD+G +   G L +I R  D +K   GE V   +VEA L
Sbjct: 402 QNSETASVLSNDG----WLDTGDIGWIDKAGNLWLIGRSNDRIK-TGGENVYPEEVEAVL 456

Query: 579 IVSPYV 584
              P V
Sbjct: 457 SQHPGV 462

Length = 563

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 80.2 bits (198), Expect = 1e-15
 Identities = 60/245 (24%), Positives = 95/245 (38%), Gaps = 46/245 (18%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
            T+ Q  + +   A GL  LG +  +RV I+A   AEW +      R    +V I  +  
Sbjct: 46  YTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYR 105

Query: 167 EEALCYSLNETEVTTVIC-----GSKELKKLVDL-------------SGQLDTVKHVICM 208
              L Y+L ++ V  VIC      S     L +L               +L  ++ V+ +
Sbjct: 106 ASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSL 165

Query: 209 DANIPSAVSSVEQSGRWKITSFADVQILG----------RENPVDADYPVSADVAVIMYT 258
               P               ++ ++Q  G          R+  +D D P++     I YT
Sbjct: 166 APAPPPG-----------FLAWHELQARGETVSREALAERQASLDRDDPIN-----IQYT 209

Query: 259 SGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIA-GVG 317
           SG+TG PKG  ++H N+L      +     L   D     +PL H   +V  NL    VG
Sbjct: 210 SGTTGFPKGATLSHHNILNN-GYFVAESLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVG 268

Query: 318 SAIGY 322
           + + Y
Sbjct: 269 ACLVY 273

Length = 558

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 79.8 bits (197), Expect = 1e-15
 Identities = 92/371 (24%), Positives = 143/371 (38%), Gaps = 92/371 (24%)

Query: 231 ADVQILGRENPVDADYPVSADV-------AVIMYTSGSTGLPKGVMMTHGNVLA-TVSAV 282
           +D  +LG E+ +    P  A V       A+IMYTSG+TG PKG ++TH N+    ++ +
Sbjct: 148 SDDSVLGYEDLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCL 207

Query: 283 MTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGD 342
            T   D+ S DV    +PL H         IAG+GS       L L            G 
Sbjct: 208 RTNGADINS-DVGFVGVPLFH---------IAGIGSM---LPGLLL------------GA 242

Query: 343 ASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLE 402
            +V+ P        +LD                                          E
Sbjct: 243 PTVIYPLGAFDPGQLLD--------------------------------------VLEAE 264

Query: 403 KLLWNLLVFSKVRAILGG--------RIRFILSGGAPLSADTQRFINICL-GAPIGQGYG 453
           K+    LV ++ +A+            +R +  G AP S    R +      A I   +G
Sbjct: 265 KVTGIFLVPAQWQAVCAEQQARPRDLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFG 324

Query: 454 LTETCAGGTFSEVDDS--SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPN 511
            TE          +D+   +G VG  +P    +++D      +        GEIV   P 
Sbjct: 325 QTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVD----ENMNDVPVGEVGEIVYRAPT 380

Query: 512 VTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSL 571
           +  GY+ N E T E +     G  WF++GD+ +   +G + ++DRKKD++ +  GE +  
Sbjct: 381 LMSGYWNNPEATAEAF---AGG--WFHSGDLVRQDEEGYVWVVDRKKDMI-ISGGENIYC 434

Query: 572 GKVEAALIVSP 582
            +VE  L   P
Sbjct: 435 AEVENVLASHP 445

Length = 542

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 79.9 bits (197), Expect = 1e-15
 Identities = 63/239 (26%), Positives = 104/239 (43%), Gaps = 23/239 (9%)

Query: 422 IRFILSGGAPLSAD-TQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSS--VGRVGAPL 478
           +R+  +GGAP   +  + FI+   G   GQG+G+TET         +D+   VG +G P+
Sbjct: 266 VRWFYNGGAPCPEELMREFID--RGFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPV 323

Query: 479 PCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFY 538
                +LID      +        GE++I GPNV   Y+   + T+E  +       W  
Sbjct: 324 LFCDYELID-ENKNKV---EVGEVGELLIRGPNVMKEYWNRPDATEETIQDG-----WLC 374

Query: 539 TGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSY- 597
           TGD+ +V  DG + I+ RKK+++ +  GE +   +VE  +     V  + +       + 
Sbjct: 375 TGDLARVDEDGFVYIVGRKKEMI-ISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWG 433

Query: 598 ---CVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLS-YPWTSEAGLVTAAL 652
                 +V  S   + E   K  I      L K++IP +I  L   P  +   +  A L
Sbjct: 434 EIPIAFIVKKSSSVLIE---KDVIEHCRLFLAKYKIPKEIVFLKELPKNATGKIQKAQL 489

Length = 496

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 80.0 bits (197), Expect = 3e-15
 Identities = 103/459 (22%), Positives = 165/459 (35%), Gaps = 86/459 (18%)

Query: 226  KITSFADVQIL----GRENPVDADYPVSAD---VAVIMYTSGSTGLPKGVMMTHGNVLAT 278
            ++     VQ+L    G EN  +A+  +      +A ++YTSGSTG PKGV + H   L+ 
Sbjct: 3165 RLPLAQGVQVLDLDRGDENYAEANPAIRTMPENLAYVIYTSGSTGKPKGVGIRHS-ALSN 3223

Query: 279  VSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKG 338
                M     LG  D  L +               +          PL            
Sbjct: 3224 HLCWMQQAYGLGVGDRVLQFTT------------FSFDVFVEELFWPLM----------- 3260

Query: 339  TQGDASVLRPTVMASVP-AILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFG 397
              G   VL        P  +++ +       + A   + +   +   A R          
Sbjct: 3261 -SGARVVLAGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEEDAHRC--------- 3310

Query: 398  AWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTET 457
                                    ++ I+ GG  L AD Q+ +    G P+   YG TE 
Sbjct: 3311 ----------------------TSLKRIVCGGEALPADLQQQVF--AGLPLYNLYGPTEA 3346

Query: 458  CAGGTFSEVDDSSVGR--VGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVG 515
                T  +  +       +G P+      ++D    G L        GE+ + G  +  G
Sbjct: 3347 TITVTHWQCVEEGKDAVPIGRPIANRACYILD----GSLEPVPVGALGELYLGGEGLARG 3402

Query: 516  YFKNEEKTKEVYKVD--DKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGK 573
            Y      T E +  D    G R + TGD+ +  ADG +E I R    VK++ G  + LG+
Sbjct: 3403 YHNRPGLTAERFVPDPFVPGERLYRTGDLARYRADGVIEYIGRVDHQVKIR-GFRIELGE 3461

Query: 574  VEAALIVSPYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAK 633
            +EA L+  P+V   ++ A       VA VV    A +   A +  +   A L ++ +PA 
Sbjct: 3462 IEARLLEHPWVREAVVLAVDGRQL-VAYVVPEDEAGDLREALKAHLK--ASLPEYMVPAH 3518

Query: 634  IKLL-SYPWTSEAGLVTAALKIKREAIRKAFADDLARLY 671
            +  L   P T          K+ R+A+ +  A  L + Y
Sbjct: 3519 LLFLERMPLTPNG-------KLDRKALPRPDAALLQQDY 3550

Length = 5163

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 77.7 bits (191), Expect = 7e-15
 Identities = 60/217 (27%), Positives = 101/217 (46%), Gaps = 17/217 (7%)

Query: 427 SGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDD-SSVGRVGAPLPCSFIKL 485
           SGGAPL  +   F     G  +  G+G+TETC+ GT    +     G +G  LP   + +
Sbjct: 319 SGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDV 378

Query: 486 IDWPEGGYLTSDSPMPR---GEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDV 542
           +   +         +P    GE+ I GPNVT GY+   E++ E + V D+    F TGD+
Sbjct: 379 VSLDD-----PTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAF-VGDR----FLTGDI 428

Query: 543 GQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHA--DPFHSYCVA 600
           G +  DG   ++DRKKD++ +  G  V    +E A+   P V  +++    D +      
Sbjct: 429 GYMDTDGYFFLVDRKKDMI-ISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAK 487

Query: 601 LVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLL 637
             V  +P  + ++  +       +L K E+P  ++ +
Sbjct: 488 AFVKLRPGAKPFSLDELRAFLAGKLGKHELPVAVEFV 524

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 77.7 bits (192), Expect = 7e-15
 Identities = 67/230 (29%), Positives = 96/230 (41%), Gaps = 40/230 (17%)

Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
           GE   +TY +    +C FA+ L  LG KK +RVAI+     E  +A+  C R       +
Sbjct: 84  GEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVV 143

Query: 162 YASLGEEALCYSLNETEVTTVIC------GSK--ELKKLVD--LSGQLDTVKHVICMD-A 210
           +     EAL   +N+     VI       G K   LK +VD  L     +V+HV+ +   
Sbjct: 144 FGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRT 203

Query: 211 NIPSAVSSVEQSGRWKITSFADV---QILGRENPVDADYPVSA-DVAVIMYTSGSTGLPK 266
             P         GR       DV    ++ + +      P+ + D   I+YTSGSTG PK
Sbjct: 204 GNPVPW----VEGR-------DVWWHDLMAKASAYCEPEPMDSEDPLFILYTSGSTGKPK 252

Query: 267 GVMMTHGNVLATVSAVMTIVPDLGSKDV--------------YLAYLPLA 302
           GV+ T G  L   +  M  V D+   D+              Y+ Y PLA
Sbjct: 253 GVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIVYGPLA 302

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 77.3 bits (191), Expect = 8e-15
 Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 53/197 (26%)

Query: 420 GRIRFILSGGAPLSADT-QRFINICLGAPIG-------QGYGLTETCAGGTFS------- 464
             +R+I++ G  + A T +RF+   L AP G         +G++ETC+G T+S       
Sbjct: 289 SSLRYIINAGEAVVAKTIRRFLE--LLAPYGLPADAIRPAFGMSETCSGVTYSRGFRTGP 346

Query: 465 ----EVDDSSVGR----------------VGAPLPCSFIKLIDWPEGGYLTSDSPMPRGE 504
                + DS  G                 +G P+P   I+++D          + +P GE
Sbjct: 347 DTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIVD-------EDGALLPEGE 399

Query: 505 I---VIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
           +    + GP VT GY++N E   E +  D     WF TGD+G +H DG L I  R+KD++
Sbjct: 400 VGRLQVRGPTVTSGYYRNPEANAEAFTEDG----WFRTGDLGFLH-DGRLTITGREKDMI 454

Query: 562 KLQHGEYVSLGKVEAAL 578
            + +G      ++EAA+
Sbjct: 455 II-NGVNYYNHEIEAAV 470

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 77.2 bits (191), Expect = 1e-14
 Identities = 48/226 (21%), Positives = 75/226 (33%), Gaps = 21/226 (9%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           ++Y +       +A   A  G  K + VA+  + R E+  A  G  +    V  +     
Sbjct: 63  ISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLNTQQR 122

Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVIC----MDANIPSAVSSVEQS 222
              L +SLN  +   +I G  EL +  + +         +        + P     +  +
Sbjct: 123 GAVLAHSLNLVDAKHLIVGE-ELVEAFEEARADLARPPRLWVAGGDTLDDPEGYEDLAAA 181

Query: 223 GRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV 282
                            NP       + D A  +YTSG+TGLPK  +M+H   L      
Sbjct: 182 ----AAGAPT------TNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKA-MGG 230

Query: 283 MTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTL 328
              +  L   DV    LPL H              S +  G  L L
Sbjct: 231 FGGLLRLTPDDVLYCCLPLYH-----NTGGTVAWSSVLAAGATLAL 271

Length = 600

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 75.6 bits (186), Expect = 3e-14
 Identities = 72/203 (35%), Positives = 93/203 (45%), Gaps = 22/203 (10%)

Query: 427 SGGAPLSADT-QRFINICLGAPIGQGYGLTETCAGGT--FSEVDDSSVGRVGAPLPCSFI 483
            G APLS    Q F+         QGYG+TE+ A GT  F+    S    VG   P    
Sbjct: 326 CGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQA 385

Query: 484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVG 543
           K++DW  G  L    P   GE+ I GP V  GY  N + T     +D  G  W  TGD+ 
Sbjct: 386 KVVDWSTGCLL---PPGNCGELWIQGPGVMKGYLNNPKAT--QSTIDKDG--WLRTGDIA 438

Query: 544 QVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYC----V 599
               DG L I+DR K+I+K + G  ++   +EA LI  P + +  + A P    C    V
Sbjct: 439 YFDEDGYLYIVDRLKEIIKYK-GFQIAPADLEAVLISHPEIIDAAVTAVP-DKECGEIPV 496

Query: 600 ALVVA------SQPAVEEWAAKQ 616
           A VV       SQ AV  + AKQ
Sbjct: 497 AFVVRRQGSTLSQEAVINYVAKQ 519

Length = 560

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 75.4 bits (186), Expect = 4e-14
 Identities = 55/154 (35%), Positives = 78/154 (50%), Gaps = 17/154 (11%)

Query: 409 LVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVD- 467
           L FSK+    GG       G A      +R++ +  G PI +GYGL+ET    T + VD 
Sbjct: 324 LDFSKLIVANGG-------GMAVQRPVAERWLEMT-GCPITEGYGLSETSPVATCNPVDA 375

Query: 468 DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVY 527
               G +G PLP + + + D  +G  L    P   GEI I GP V  GY+   ++T +V 
Sbjct: 376 TEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEP---GEICIRGPQVMAGYWNRPDETAKVM 431

Query: 528 KVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
             D     +F TGDVG +   G  +I+DRKKD++
Sbjct: 432 TADG----FFRTGDVGVMDERGYTKIVDRKKDMI 461

Length = 557

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 75.1 bits (185), Expect = 4e-14
 Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 19/169 (11%)

Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCA--GGTFSEVDDSSVGRVGAPL 478
            +R  L  GAP+           LGA I   +G+TE  A       + D+ +    G PL
Sbjct: 313 SLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPL 372

Query: 479 PCSFIKLIDWPEGGYLTSDSPMPRGEI---VIAGPNVTVGYFKNEEKTKEVYKVDDKGMR 535
           P   ++++D          +P+P G+I    + G +   GY K  +    +   D  G  
Sbjct: 373 PGVEVRVVD-------ADGAPLPAGQIGRLQVRGCSNFGGYLKRPQ----LNGTDADG-- 419

Query: 536 WFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
           WF TGD+ ++ ADG + I  R KD++ ++ GE + + ++EA L   P +
Sbjct: 420 WFDTGDLARIDADGYIRISGRSKDVI-IRGGENIPVVEIEALLYRHPAI 467

Length = 547

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 74.9 bits (185), Expect = 5e-14
 Identities = 88/343 (25%), Positives = 125/343 (36%), Gaps = 89/343 (25%)

Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV---MTIVPDLGSKDVYLAYLPLAHVLEL 307
           D+A I++TSGSTG PKGV+ THG   A + A+     I P     ++ L   PL      
Sbjct: 175 DMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPG----EIDLPTFPL-----F 225

Query: 308 VAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASV-PA-ILDRVRD-G 364
                  G+ S I                     D +  RP   A+V PA +   +   G
Sbjct: 226 ALFGPALGMTSVIPD------------------MDPT--RP---ATVDPAKLFAAIERYG 262

Query: 365 VRKKVDAKGGLSKKLF-DLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIR 423
           V             LF   A   RL        G +G      N +    +R ++     
Sbjct: 263 VT-----------NLFGSPALLERL--------GRYGEA----NGIKLPSLRRVISA--- 296

Query: 424 FILSGGAPLSADT-QRFINICL--GAPIGQGYGLTE----TCAGGT---FSEVDDSSVGR 473
                GAP+     +RF  + L   A I   YG TE    +        F+    +  G 
Sbjct: 297 -----GAPVPIAVIERFRAM-LPPDAEILTPYGATEALPISSIESREILFATRAATDNGA 350

Query: 474 ---VGAPLPCSFIKLIDWPEGGYLTSD--SPMPR---GEIVIAGPNVTVGYFKNEEKTKE 525
              VG P+    +++I   +      D    +     GEIV+AGP VT  Y+   E T+ 
Sbjct: 351 GICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRL 410

Query: 526 VYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEY 568
               D +G  W   GD+G + A G L    RK   V+   G  
Sbjct: 411 AKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTL 453

Length = 552

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 74.9 bits (185), Expect = 5e-14
 Identities = 66/234 (28%), Positives = 98/234 (41%), Gaps = 35/234 (14%)

Query: 96  FEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRN 155
           +E     E   +TY + +  +C FA+ L  LG KK +RVAI+     E  +A+  C R  
Sbjct: 68  WEGEPGDESRTITYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLACARIG 127

Query: 156 VTVVTIYASLGEEALCYSLNETEVTTVIC------GSK--ELKKLVDLS-GQLDTVKHVI 206
                ++A    EAL   +N+ +   +I       G K   LK++VD +  +  +V+ VI
Sbjct: 128 AIHSVVFAGFSAEALADRINDAKSKLLITADGGYRGGKVIPLKEIVDEALEKCPSVEKVI 187

Query: 207 CMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPV---SADVAVIMYTSGSTG 263
            +       V  VE    W    + D+             P    + D   I+YTSGSTG
Sbjct: 188 VVK-RTGGEVPMVEGRDVW----WHDLM----AKASPYCEPEPMDAEDPLFILYTSGSTG 238

Query: 264 LPKGVMMTHGNVLATVSAVMTIVPDLGSKDV--------------YLAYLPLAH 303
            PKGV+ T G  L   +     V D+   DV              Y+ Y PLA+
Sbjct: 239 KPKGVVHTTGGYLVYAATTFKYVFDIHPDDVYWCTADIGWITGHSYIVYGPLAN 292

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 74.1 bits (183), Expect = 1e-13
 Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 22/120 (18%)

Query: 451 GYGLTETCAGGTFSEVDD------SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR-- 502
            YG+TET    T +  DD      ++VGR    LP   +K++D PE G       +PR  
Sbjct: 347 AYGMTETSPVSTQTRTDDPLEKRVTTVGRA---LPHLEVKIVD-PETG-----ETVPRGE 397

Query: 503 -GEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
            GE+   G +V  GY+ + EKT E   +D  G  W +TGD+  +  +G + I+ R KD++
Sbjct: 398 QGELCTRGYSVMKGYWNDPEKTAEA--IDADG--WMHTGDLAVMDEEGYVNIVGRIKDMI 453

Length = 559

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 73.0 bits (180), Expect = 2e-13
 Identities = 67/235 (28%), Positives = 95/235 (40%), Gaps = 34/235 (14%)

Query: 90  ADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQ 149
           AD    F +   G     TYG         A+ L  LG K  +RVA+  +   E      
Sbjct: 14  ADRDAPFIETPDGLR--YTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYL 71

Query: 150 GCFRRNVTVV---TIYASLGEEALCYSLNETEVTTVICGSK---ELKKLVDLSGQLDTVK 203
              R     +   T Y +L E  L Y + + E   V+C       L K+   +G      
Sbjct: 72  ATLRAGAVFLPLNTAY-TLAE--LDYFIGDAEPALVVCDPANFAWLSKIAAAAG----AP 124

Query: 204 HVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTG 263
           HV  +DA+      S+ ++       F  V       P  AD     D+A I+YTSG+TG
Sbjct: 125 HVETLDAD---GTGSLLEAAAAAPDDFETV-------PRGAD-----DLAAILYTSGTTG 169

Query: 264 LPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLEL-VAEN--LIAG 315
             KG M++HGN L + +  +         DV +  LP+ H   L VA N  L+AG
Sbjct: 170 RSKGAMLSHGN-LLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAG 223

Length = 504

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 73.3 bits (181), Expect = 2e-13
 Identities = 53/196 (27%), Positives = 76/196 (38%), Gaps = 40/196 (20%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQ-GCFRRNVTVVTIYASL 165
            TY +  E +   A GL  LG +K +RV I+A    EW V  Q    +    +VTI  + 
Sbjct: 44  WTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEW-VLTQFATAKIGAILVTINPAY 102

Query: 166 GEEALCYSLNETEVTTVICGSK---------------ELKKLVDLSGQLDT-----VKHV 205
               L Y+LN++    +I                   EL       GQL +     ++ V
Sbjct: 103 RLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCE--PGQLQSARLPELRRV 160

Query: 206 ICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSA-----DVAVIMYTSG 260
           I +           +  G     +F ++  LGR           A     D   I YTSG
Sbjct: 161 IFLGDE--------KHPGML---NFDELLALGRAVDDAELAARQATLDPDDPINIQYTSG 209

Query: 261 STGLPKGVMMTHGNVL 276
           +TG PKG  +TH N+L
Sbjct: 210 TTGFPKGATLTHRNIL 225

Length = 559

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 73.5 bits (181), Expect = 2e-13
 Identities = 111/506 (21%), Positives = 192/506 (37%), Gaps = 98/506 (19%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
            TY + ++ +   A  L +LG  K +RV I+     E  +A+  C R       ++    
Sbjct: 74  YTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFA 133

Query: 167 EEALCYSLNETEVTTVI---CGSK-----ELKKLVDLSGQLDTVKHVICMDANIPSAVSS 218
            + L   +++ +   ++    G +       K L+D + +L   K    +  N    V +
Sbjct: 134 SKELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKALELSQHKPHKVLILNRGQ-VPA 192

Query: 219 VEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAT 278
             + GR     +A+  ++ +  PVD     S D   I+YTSG+TG PKGV+   G     
Sbjct: 193 PLKPGRD--LDWAE--LMAKARPVDCVPVESTDPLYILYTSGTTGKPKGVVRDTGGYAVA 248

Query: 279 VSAVMTIVPDLGSKDVYLAYLPLAHVLE---LVAENLIAGVGSAIGYGTPLTLTDTSSKI 335
           +   M  +  +   DV+ A   +  V+    +V   L+ G  + +  G P+         
Sbjct: 249 LKWSMRNIYGIKPGDVFWAASDVGWVVGHSYIVYGPLLHGATTVLYEGKPV--------- 299

Query: 336 KKGTQGDASVL-------RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRL 388
             GT  DA              + + P  +  +R     K D  G   KK +DL      
Sbjct: 300 --GTP-DAGAYWRVIEEYGVNALFTAPTAIRAIR-----KQDPDGEYIKK-YDL------ 344

Query: 389 SAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPI 448
                                            +R +   G  L + T  +I   LG P+
Sbjct: 345 -------------------------------SSLRALFLAGERLDSPTLEWIEKTLGVPV 373

Query: 449 GQGYGLTET-------CAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMP 501
              +  TET       C G    E+     G  G P+P   ++++D   G  L       
Sbjct: 374 IDHWWQTETGWPITANCVG---LELLPIKPGSPGKPVPGYDVQVLD-ETGEELGPGE--- 426

Query: 502 RGEIVIAGP---NVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKK 558
            G IVI  P      +  + ++E+ K++Y     G  ++ TGD G    DG L ++ R  
Sbjct: 427 LGNIVIKLPLPPGCLLTLWGDDERFKKLYLNKFPG--YYDTGDSGYKDEDGYLFVMGRTD 484

Query: 559 DIVKLQHGEYVSLGKVEAALIVSPYV 584
           D++ +  G  +S G++E +++  P V
Sbjct: 485 DVINVA-GHRLSTGEMEESVLKHPDV 509

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 71.5 bits (176), Expect = 3e-13
 Identities = 84/352 (23%), Positives = 127/352 (36%), Gaps = 75/352 (21%)

Query: 249 SADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELV 308
           SAD   ++YT G+TG+PKGVM    ++   +         LG  D       L  + + V
Sbjct: 2   SADDLYMLYTGGTTGMPKGVMWRQEDIFRVL---------LGGPDFATGEPTLEELAKQV 52

Query: 309 AEN-----------LIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAI 357
           A             L+ G G  +                    G   VL P        +
Sbjct: 53  AAGGAGTRFLPACPLMHGAGQWLALSALFA-------------GGTVVLLPDDKFDPDRV 99

Query: 358 LDRVRDGVRKKVDAKGGLSKKLF---DLAYARRL-SAINGSWFGAWGLEKLLWNLLVFSK 413
              V    + +V+        L    D A+AR L  A+  +  G + L  L         
Sbjct: 100 WRTV---EKHRVNT-------LVIVGD-AFARPLLEALEAA--GRYDLSSL--------- 137

Query: 414 VRAILGGRIRFILSGGAPLSADT-QRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVG 472
                    R I S GA  S +  Q  + +     +    G +ET  GG+ S        
Sbjct: 138 ---------RAISSSGAMWSPEVKQGLLELLPNLALVDALGASETGGGGS-SVSRAGGAS 187

Query: 473 RVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDK 532
             G         ++D  +G  +   S    G I   G  V +GY+K+ EKT + ++  D 
Sbjct: 188 ATGKFELGPDTVVLD-EDGSEVPPGSGEV-GWIARGGR-VPLGYYKDPEKTAKTFREID- 243

Query: 533 GMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
           G+R+   GD  +V ADG + ++ R    +    GE V   +VE AL   P V
Sbjct: 244 GVRYAVPGDFARVEADGTITLLGRGSVCIN-TGGEKVFPEEVEEALKAHPDV 294

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 73.1 bits (179), Expect = 4e-13
 Identities = 108/531 (20%), Positives = 180/531 (33%), Gaps = 113/531 (21%)

Query: 105  EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYAS 164
            E LTY +        A  L   G   E  V I  +  AE  V L    +     V +   
Sbjct: 4575 EKLTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGLLAVLKAGGAYVPLDPE 4634

Query: 165  LGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSS--VEQS 222
               E L Y + ++    ++  S  L++L                   IP  ++S  +++ 
Sbjct: 4635 YPRERLAYMMEDSGAALLLTQSHLLQRL------------------PIPDGLASLALDRD 4676

Query: 223  GRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV 282
              W+     D         +  D     ++A ++YTSGSTG PKGV ++HG+++  +   
Sbjct: 4677 EDWEGFPAHDPA-----VRLHPD-----NLAYVIYTSGSTGRPKGVAVSHGSLVNHL-HA 4725

Query: 283  MTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGD 342
                 +L   D  L ++              +  GS  G   PL                
Sbjct: 4726 TGERYELTPDDRVLQFMSF------------SFDGSHEGLYHPLI-------------NG 4760

Query: 343  ASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLE 402
            ASV+                       D      ++L+   +  R++ +           
Sbjct: 4761 ASVVIR---------------------DDSLWDPERLYAEIHEHRVTVLV--------FP 4791

Query: 403  KLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLG-APIGQGYGLTET---- 457
             +    L     R      +R    GG  ++  +       L    +  GYG TET    
Sbjct: 4792 PVYLQQLAEHAERDGEPPSLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTV 4851

Query: 458  ----CAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMP---RGEIVIAGP 510
                   G       ++   +G PL      ++D          +P+P    GE+ + G 
Sbjct: 4852 LLWKARDGD---ACGAAYMPIGTPLGNRSGYVLD-------GQLNPLPVGVAGELYLGGE 4901

Query: 511  NVTVGYFKNEEKTKEVY---KVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGE 567
             V  GY +    T E +        G R + TGD+ +  ADG ++ + R    VK++ G 
Sbjct: 4902 GVARGYLERPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKIR-GF 4960

Query: 568  YVSLGKVEAALIVSPYVDNIMMHAD--PFHSYCVALVVASQPAVEEWAAKQ 616
             + LG++EA L   P V   ++ A         V  VV   PA+ +    Q
Sbjct: 4961 RIELGEIEARLREHPAVREAVVIAQEGAVGKQLVGYVVPQDPALADADEAQ 5011

Length = 5163

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 71.2 bits (175), Expect = 7e-13
 Identities = 57/212 (26%), Positives = 89/212 (41%), Gaps = 27/212 (12%)

Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFV-ALQGCFRRNV--TV 158
           G  E+ +Y +  E      +GL  LG K  + V I    R E FV A   C         
Sbjct: 35  GSEEFQSYAELLEEAERILAGLRALGLKPGDSV-ILQLERNEDFVTAFWACVLGGFVPVP 93

Query: 159 VTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSS 218
           V +  +  E                  +  + KL ++   L     VI  DA + +A++ 
Sbjct: 94  VAVPPTYDEP-----------------NAAVAKLRNIWELLG--SPVILTDAALVAALAG 134

Query: 219 VEQSGRWKITSFADVQILGRENPVDADYPVSA--DVAVIMYTSGSTGLPKGVMMTHGNVL 276
           +      +      ++ L R  P DA    +   D A+++ TSGSTG+PK V++TH N+L
Sbjct: 135 LRTRAGLEALRVLAIEEL-RSAPPDAPLHPARPDDPALLLLTSGSTGVPKCVVLTHRNIL 193

Query: 277 ATVSAVMTIVPDLGSKDVYLAYLPLAHVLELV 308
           A  +  +  V      DV L ++PL HV  +V
Sbjct: 194 ARSAGTV-QVNGFTPDDVSLNWMPLDHVGGIV 224

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 70.9 bits (174), Expect = 9e-13
 Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 22/156 (14%)

Query: 409 LVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCA---GGTFSE 465
           L FS ++  +GG       G A   A  +R++ +  G  + +GYGLTE C+        +
Sbjct: 322 LDFSSLKLSVGG-------GMAVQQAVAERWVKLT-GQYLLEGYGLTE-CSPLVSVNPYD 372

Query: 466 VDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKE 525
           +D  S G +G P+P + IKL+D  +G  +    P   GE+ + GP V +GY++  E T E
Sbjct: 373 LDYYS-GSIGLPVPSTEIKLVD-DDGNEVPPGEP---GELWVKGPQVMLGYWQRPEATDE 427

Query: 526 VYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
           V K    G  W  TGD+  +  +G L I+DRKKD++
Sbjct: 428 VIK---DG--WLATGDIAVMDEEGFLRIVDRKKDMI 458

Length = 560

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 69.5 bits (171), Expect = 1e-12
 Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAE 310
           D A+I YTSG+TG PKG M+TH NVL    ++   +  L   D  L  +PL HV  LV  
Sbjct: 3   DPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRL-GLTEGDRTLVPVPLFHVFGLVLG 61

Query: 311 NLIA 314
            L +
Sbjct: 62  VLAS 65

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 70.7 bits (174), Expect = 1e-12
 Identities = 59/189 (31%), Positives = 86/189 (45%), Gaps = 35/189 (18%)

Query: 415 RAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTET------CAGGTFSEVDD 468
           RA +   +  +++G AP +A   +   I  G  +   YGLTET      CA     E D 
Sbjct: 292 RAGIDHPVHAMVAGAAPPAAVIAKMEEI--GFDLTHVYGLTETYGPATVCAWQ--PEWDA 347

Query: 469 SSV-------GRVGAPLPC-SFIKLIDWPEGGYLTSDSPMPR-----GEIVIAGPNVTVG 515
             +        R G   P    + ++D P+        P+P      GEI+  G  V  G
Sbjct: 348 LPLDERAQLKARQGVRYPLQEGVTVLD-PDTM-----QPVPADGETIGEIMFRGNIVMKG 401

Query: 516 YFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVE 575
           Y KN + T+E +     G  WF+TGD+  +H DG ++I DR KDI+ +  GE +S  +VE
Sbjct: 402 YLKNPKATEEAFA---GG--WFHTGDLAVLHPDGYIKIKDRSKDII-ISGGENISSIEVE 455

Query: 576 AALIVSPYV 584
             L   P V
Sbjct: 456 DVLYRHPAV 464

Length = 545

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 70.2 bits (172), Expect = 2e-12
 Identities = 52/186 (27%), Positives = 79/186 (42%), Gaps = 34/186 (18%)

Query: 422 IRFILSGGAPLSADT-----QRFINICLGAPIGQGYGLTETCAGGTFSEVDDS---SVGR 473
           +RF L GG  +         QR I +         YG TE+        +DD     +  
Sbjct: 304 LRFFLCGGTTIPKKVARECQQRGIKLL------SVYGSTESSPH-AVVNLDDPLSRFMHT 356

Query: 474 VGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKG 533
            G       IK++D        +  P   GE    GPNV +GY    E T     +D++G
Sbjct: 357 DGYAAAGVEIKVVD----EARKTLPPGCEGEEASRGPNVFMGYLDEPELTARA--LDEEG 410

Query: 534 MRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADP 593
             W+Y+GD+ ++   G ++I  RKKDI+ ++ GE +S  +VE         D ++ H   
Sbjct: 411 --WYYSGDLCRMDEAGYIKITGRKKDII-VRGGENISSREVE---------DILLQHPK- 457

Query: 594 FHSYCV 599
            H  CV
Sbjct: 458 IHDACV 463

Length = 547

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 69.3 bits (170), Expect = 2e-12
 Identities = 64/254 (25%), Positives = 106/254 (41%), Gaps = 35/254 (13%)

Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTE----TCAGGTFSEVDDSSVGRVGA 476
           R+R + SGG  L  +   +    LG  + + YG TE                 S+G+   
Sbjct: 208 RLRAVASGGESLGEELLEWARDELGLTVNEFYGQTEANLVVGNCAALGPARPGSMGK--- 264

Query: 477 PLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPN--VTVGYFKNEEKTKEVYKVDDKGM 534
           P+P   + ++D   G  +    P   GEI +  P+  + +GY+ N E T   +  D    
Sbjct: 265 PVPGHEVAVVD-DAGRPV---PPGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAGD---- 316

Query: 535 RWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDN--IMMHAD 592
            W  TGD+G+  ADG L    R  D++K   G  +   ++E  L+  P V    ++   D
Sbjct: 317 -WLLTGDLGRRDADGYLWFKGRADDVIK-SSGYRIGPAEIEECLLKHPAVLEAAVVGVPD 374

Query: 593 P-----FHSYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGL 647
           P       ++ V L    +P+ E     Q +V   +RL   E P +I+ +     +  G 
Sbjct: 375 PERGEIVKAFVV-LAEGVEPSDELATELQELV--KSRLAAHEYPREIEFVDELPMTTTG- 430

Query: 648 VTAALKIKREAIRK 661
                KI+R  +R+
Sbjct: 431 -----KIRRRELRR 439

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 69.3 bits (170), Expect = 2e-12
 Identities = 54/172 (31%), Positives = 75/172 (43%), Gaps = 20/172 (11%)

Query: 420 GRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAG-GTFS--EVDDSSVGRVGA 476
             +R ++S G PL+ +   +     G PI  GYG TET      F   EV   S+GR   
Sbjct: 197 SHLRHVVSAGEPLNPEVIDWWRAATGLPIRDGYGQTETGLLVANFPGMEVKPGSMGR--- 253

Query: 477 PLPCSFIKLIDWPEGGYLTSDSPMPRGEIVI----AGPNVTVGYFKNEEKTKEVYKVDDK 532
           P P   + +ID  EG  L        G+I +      P +  GY K+ EKT+      D 
Sbjct: 254 PAPGYRVAIID-DEGNELPPGEE---GDIAVRVKPRPPGLFRGYLKDPEKTEAT-IRGD- 307

Query: 533 GMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
              W+ TGD      DG    + R  D++K   G  +   +VE+ALI  P V
Sbjct: 308 ---WYLTGDRAIKDEDGYFWFVGRADDVIK-SSGYRIGPFEVESALIEHPAV 355

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 69.3 bits (169), Expect = 3e-12
 Identities = 62/176 (35%), Positives = 81/176 (46%), Gaps = 28/176 (15%)

Query: 425 ILSGGAP----LSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDD-------SSVGR 473
           +L+GG+P    L    QR     LG  +   YGLTE      F E  D       +    
Sbjct: 305 VLTGGSPPPAALVKKVQR-----LGFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQME 359

Query: 474 VGAPLPCSFIKLIDWPEGGYLTSDSPMPR-----GEIVIAGPNVTVGYFKNEEKTKEVYK 528
           + A    S + L D       T +S +PR     GEIVI G ++  GY KN + T E +K
Sbjct: 360 LKARQGVSILGLADVDVKNKETQES-VPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFK 418

Query: 529 VDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
                  W  TGDVG +H DG +EI DR KDI+ +  GE +S  +VE  L   P V
Sbjct: 419 -----HGWLNTGDVGVIHPDGHVEIKDRSKDII-ISGGENISSVEVENVLYKYPKV 468

Length = 579

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 69.0 bits (169), Expect = 4e-12
 Identities = 55/208 (26%), Positives = 92/208 (44%), Gaps = 36/208 (17%)

Query: 451 GYGLTETCAGGTFSEVDDS------SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGE 504
            YG+TET      +   D       +VGR     P   +K++D P+G  +        GE
Sbjct: 349 AYGMTETSPVSLQTTAADDLERRVETVGRT---QPHLEVKVVD-PDGATVPRGE---IGE 401

Query: 505 IVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQ 564
           +   G +V  GY+ N E T E   +D+ G  W +TGD+  +   G + I+ R KD++ ++
Sbjct: 402 LCTRGYSVMKGYWNNPEATAES--IDEDG--WMHTGDLATMDEQGYVRIVGRSKDMI-IR 456

Query: 565 HGEYVSLGKVEAALIVSPYVDNIMMHADPFHSY---CVALVV------ASQPAVEEWAAK 615
            GE +   ++E  L   P V ++ +   P   Y    VA V       AS+  + E+   
Sbjct: 457 GGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAASEEELREFC-- 514

Query: 616 QGIVGKNARLDKFEIPAKIKLLS-YPWT 642
                  AR+  F++P   + +  +P T
Sbjct: 515 ------KARIAHFKVPRYFRFVDEFPMT 536

Length = 558

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 68.3 bits (167), Expect = 5e-12
 Identities = 55/206 (26%), Positives = 87/206 (42%), Gaps = 27/206 (13%)

Query: 101 LGEYEWLTYGQAFETICNFASGLA-QLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVV 159
           + E E +TY Q  E +   A+ L  +L  KK ER+AI +    E+ V L    +     V
Sbjct: 22  ITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAV 81

Query: 160 TIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSV 219
            +   L E  L + L ++  TTV+   K  + +     ++  V+ VI             
Sbjct: 82  PLNIRLTENELIFQLKDSG-TTVLFVEKTFQNMALSMQKVSYVQRVI------------- 127

Query: 220 EQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVL-AT 278
                  ITS    +I  R+   +      +   +I YTSG+TG PKG ++T  N+    
Sbjct: 128 ------SITSLK--EIEDRK-IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNA 178

Query: 279 VSAVMTIVPDLGSKDVYLAYLPLAHV 304
           ++    I  DL   D  +  LPL H+
Sbjct: 179 LNNTFAI--DLTMHDRSIVLLPLFHI 202

Length = 496

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 68.1 bits (167), Expect = 6e-12
 Identities = 50/200 (25%), Positives = 80/200 (40%), Gaps = 15/200 (7%)

Query: 108 TYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGE 167
           TY + ++     AS L++LG  K + VA+ A        A  G       +V +   L  
Sbjct: 31  TYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPLNTRLDA 90

Query: 168 EALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVI-CMDANIPSAVSSVEQSGRWK 226
           + + + LN +E   +    + L    +    L T + +   +    P+A  S E      
Sbjct: 91  DDIAFILNHSEAKVLFVDQEFLSLAEEALALLSTKEIIDTEIIVISPAAEDSEEGDYE-- 148

Query: 227 ITSFADVQILGRENPVDADYPVSA--DVAVIMYTSGSTGLPKGVMMTH-GNVLATVSAVM 283
                   +L   +P     P     D   + YTSG+TG PKGV+ TH G  L  +  V+
Sbjct: 149 -------DLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYLNALGNVI 201

Query: 284 TIVPDLGSKDVYLAYLPLAH 303
                +  + VYL  LP+ H
Sbjct: 202 EW--GMPDRPVYLWTLPMFH 219

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 67.5 bits (165), Expect = 1e-11
 Identities = 51/203 (25%), Positives = 71/203 (34%), Gaps = 17/203 (8%)

Query: 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYAS 164
              TY +A       A  LA  G K+ +RVA+    R E+     GC       V I  +
Sbjct: 45  TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTA 104

Query: 165 LGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGR 224
           L    L + L  +    ++  +  L  L         +  V  +DA      +SV     
Sbjct: 105 LRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDA-----PASVSVPAG 159

Query: 225 WKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVL---ATVSA 281
           W       +     + P  A      D A I+YTSG+TG  KGV   H          + 
Sbjct: 160 WSTAPLPPL-----DAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAE 214

Query: 282 VMTIVPDLGSKDVYLAYLPLAHV 304
            + I  D    DV    LPL H 
Sbjct: 215 DLEIGAD----DVLYTTLPLFHT 233

Length = 542

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 67.6 bits (165), Expect = 1e-11
 Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 24/178 (13%)

Query: 411 FSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVD-DS 469
           FS ++  LGG       G A   +  +R+  +  G  + + YGLTET      + +    
Sbjct: 328 FSSLKMTLGG-------GMAVQRSVAERWKQVT-GLTLVEAYGLTETSPAACINPLTLKE 379

Query: 470 SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEI---VIAGPNVTVGYFKNEEKTKEV 526
             G +G P+P +   + D        + + +  GEI    I GP V  GY+K  E+T +V
Sbjct: 380 YNGSIGLPIPSTDACIKD-------DAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKV 432

Query: 527 YKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
             +D  G  W +TGD+ ++   G + I+DRKKD++ L  G  V   ++E  + + P V
Sbjct: 433 --MDADG--WLHTGDIARMDEQGFVYIVDRKKDMI-LVSGFNVYPNEIEDVIAMMPGV 485

Length = 560

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 66.3 bits (162), Expect = 2e-11
 Identities = 58/219 (26%), Positives = 96/219 (43%), Gaps = 26/219 (11%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKE-ERVAIFADTRAEWFVALQGCFRRNVTVVTIYASL 165
           LTYG+ ++    FA+ L Q    K  +R+A+      ++ VA+ G  R  + VV      
Sbjct: 50  LTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVVNTNPLY 109

Query: 166 GEEALCYSLNETEVTTVICGSKELKKLVDLSGQL---DTVKHVIC--------------M 208
               + +  N++    ++C    L  +  L+ ++     VKHVI               +
Sbjct: 110 TAREMEHQFNDSGAKALVC----LANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLI 165

Query: 209 DANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGV 268
           +A +      V      +   F D    G   PV    P + DVAV+ YT G+TG+ KG 
Sbjct: 166 NAVVKHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGA 225

Query: 269 MMTHGNVLAT---VSAVMTIVPDLGSKDVYLAYLPLAHV 304
           M+TH N++A      A+M    + G  ++ +A LPL H+
Sbjct: 226 MLTHRNLVANMLQCRALMGSNLNEG-CEILIAPLPLYHI 263

Length = 562

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 66.1 bits (162), Expect = 2e-11
 Identities = 48/140 (34%), Positives = 66/140 (47%), Gaps = 12/140 (8%)

Query: 452 YGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIK-----LIDWPEGGYLTSDSPMPRGEIV 506
           YG TE     T  E+ D  + +    LP  + K     LI   EG  L        GEIV
Sbjct: 293 YGPTEATVAVTSIEITDEMLDQY-KRLPIGYAKPDSPLLIIDEEGTKLPDGEQ---GEIV 348

Query: 507 IAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHG 566
           I+GP+V+ GY  N EKT E +     G   ++TGD G +  DG L    R    +KL +G
Sbjct: 349 ISGPSVSKGYLNNPEKTAEAFF-TFDGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKL-NG 405

Query: 567 EYVSLGKVEAALIVSPYVDN 586
             + L ++E  L  S YV++
Sbjct: 406 YRIELEEIEQNLRQSSYVES 425

Length = 503

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 65.7 bits (161), Expect = 3e-11
 Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 6/82 (7%)

Query: 503 GEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVK 562
           GEIV   P + +GY+ + EKT E ++       WF++GD+G +  +G + ++DRKKD++K
Sbjct: 368 GEIVHRSPQLMLGYWDDPEKTAEAFRGG-----WFHSGDLGVMDEEGYITVVDRKKDMIK 422

Query: 563 LQHGEYVSLGKVEAALIVSPYV 584
              GE V+  +VE AL   P V
Sbjct: 423 -TGGENVASREVEEALYTHPAV 443

Length = 523

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 66.2 bits (162), Expect = 3e-11
 Identities = 45/203 (22%), Positives = 84/203 (41%), Gaps = 9/203 (4%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           +TY +  E    FA+ L Q G    +RVA+F     ++ +   G  +     V +     
Sbjct: 59  ITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFR 118

Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVI--CMDANIPSAVSSVE---- 220
           E  L Y LN+     ++   +    +  +  +  +++HVI   +   +P+  +       
Sbjct: 119 EHELSYELNDAGAEVLLALDQLAPVVEQVRAET-SLRHVIVTSLADVLPAEPTLPLPDSL 177

Query: 221 QSGRWKITSFADVQILGRENPVDADYPVSA--DVAVIMYTSGSTGLPKGVMMTHGNVLAT 278
           ++ R       D+    R        P  A   +A + YT G+TG+PKG   T  +++ T
Sbjct: 178 RAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYT 237

Query: 279 VSAVMTIVPDLGSKDVYLAYLPL 301
            +A   +    G   V+L++LP 
Sbjct: 238 AAAAYAVAVVGGEDSVFLSFLPE 260

Length = 567

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 65.5 bits (160), Expect = 4e-11
 Identities = 50/209 (23%), Positives = 85/209 (40%), Gaps = 21/209 (10%)

Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
           G     +Y +  E I   A+    LG +K ++VA+  D   E+     G  +    +V I
Sbjct: 33  GVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPI 92

Query: 162 YASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDT-VKHVICMDANIPSAVSSVE 220
            A L  E   + L  ++ + ++  ++       +  +  T ++H+      +P       
Sbjct: 93  NARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALP------- 145

Query: 221 QSGRWKITSFADVQILGRENPVDADY--PVSA-DVAVIMYTSGSTGLPKGVMMTHGNVL- 276
                     +    L  + P    Y  P+S  D A I++TSG+T  PKGV++TH N+  
Sbjct: 146 -----ADDGVSSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRF 200

Query: 277 -ATVSAVMTIVPDLGSKDVYLAYLPLAHV 304
               SA       L   DVYL  +P  H+
Sbjct: 201 AGYYSAWQC---ALRDDDVYLTVMPAFHI 226

Length = 517

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 64.9 bits (159), Expect = 6e-11
 Identities = 45/196 (22%), Positives = 72/196 (36%), Gaps = 31/196 (15%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           LTY +  E     A  L   G    + VA+  +   E  VA+    +     V +  +  
Sbjct: 13  LTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYP 72

Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
            E L + L ++    ++   + L  L            ++ ++  + +  +         
Sbjct: 73  AERLAFMLEDSGARVLL-TDESLAPLARADQ-----LPLVILEEELDAEDAGPPAP---- 122

Query: 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV 286
                          VDAD     D+A +MYTSGSTG PKGV + H  V+  V     I 
Sbjct: 123 --------------AVDAD-----DLAYVMYTSGSTGRPKGVAVPHRGVVRLVRNTNYI- 162

Query: 287 PDLGSKDVYLAYLPLA 302
             L   D +L   PL+
Sbjct: 163 -ALDPDDRFLQLSPLS 177

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 64.3 bits (157), Expect = 8e-11
 Identities = 36/78 (46%), Positives = 42/78 (53%), Gaps = 6/78 (7%)

Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAE 310
           DVAVI YTSG+TGLPKG M TH  VLAT +A       L    V LA+LPL HV  +   
Sbjct: 85  DVAVIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSG-LTPDSVLLAFLPLFHVAGMQ-- 141

Query: 311 NLIAGVGSAIGYGTPLTL 328
                + + I  G  L L
Sbjct: 142 ---GSMNAPIYTGATLVL 156

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 65.2 bits (159), Expect = 9e-11
 Identities = 87/401 (21%), Positives = 146/401 (36%), Gaps = 80/401 (19%)

Query: 251  DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAE 310
            ++A ++YTSGSTG PKGV + HG  LA     +    +L + D  L ++  +   +   E
Sbjct: 3238 NLAYVIYTSGSTGKPKGVGVRHG-ALANHLCWIAEAYELDANDRVLLFMSFS--FDGAQE 3294

Query: 311  NLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD 370
                         T +              G   V+R           + + D       
Sbjct: 3295 RF---------LWTLIC-------------GGCLVVRD----------NDLWD------- 3315

Query: 371  AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGA 430
                  ++L+   +A R+S               L      +         +   + GG 
Sbjct: 3316 -----PEELWQAIHAHRISIACFP-------PAYLQQFAEDAGGAD--CASLDIYVFGGE 3361

Query: 431  PLSADTQRFINICLG-APIGQGYGLTETCAGGTFSEVDDSSVGR-----VGAPLPCSFIK 484
             +       +   L    +  GYG TE     T  +    +V       +G P+    I 
Sbjct: 3362 AVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIY 3421

Query: 485  LIDWPEGGYLTSDSPMPRG---EIVIAGPNVTVGYFKNEEKTKEVYKVD---DKGMRWFY 538
            ++D          +P+P G   E+ I G  +  GY +    T E +  D     G R + 
Sbjct: 3422 VLD-------GQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYR 3474

Query: 539  TGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHS-- 596
            TGD+ +  ADG +E + R    VK++ G  + LG++EA L+  P V   ++ A       
Sbjct: 3475 TGDLARYRADGVIEYLGRIDHQVKIR-GFRIELGEIEARLLQHPSVREAVVLARDGAGGK 3533

Query: 597  YCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLL 637
              VA VV + P   +W          A L  + +PA++ +L
Sbjct: 3534 QLVAYVVPADPQ-GDWRETLR-DHLAASLPDYMVPAQLLVL 3572

Length = 3956

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 63.0 bits (154), Expect = 1e-10
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAH 303
           D+A I+YTSGSTG PKGVM++H N+ A   ++   + +L   D  LA LP + 
Sbjct: 3   DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYL-ELTEDDRILAVLPFSF 54

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 64.1 bits (157), Expect = 1e-10
 Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 8/82 (9%)

Query: 250 ADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVA 309
            D A I+YTSG+TG PKGV++TH  +L   + +   +  L   DV L  LPL H+     
Sbjct: 81  VDTAAILYTSGTTGPPKGVLLTHAQLLFA-ARLAARLLGLRPDDVLLTPLPLFHI----- 134

Query: 310 EN-LIAGVGSAIGYGTPLTLTD 330
            N     V +A+  G  L L  
Sbjct: 135 -NAQAYSVYAALLVGATLVLLP 155

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 64.1 bits (157), Expect = 1e-10
 Identities = 59/191 (30%), Positives = 89/191 (46%), Gaps = 22/191 (11%)

Query: 405 LWNLLVFSKVRAILGGRIRFILSGGAPLSAD-TQRFINICLGAPIGQGYGLTETCAGGTF 463
           L+N LV  +    L G +R +L GG  LS    +R +  C G  +  GYG TE     TF
Sbjct: 227 LFNQLV-DEDPEALAG-LRQLLVGGDVLSPAHVRRVLAACPGLRLINGYGPTE---NTTF 281

Query: 464 SEV-----DDSSVGRV--GAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGY 516
           S        D +   +  G P+P + + ++D  E G          GE+ + G  + +GY
Sbjct: 282 STCHVITRLDEAADSIPIGRPIPNTTVYILD--EEGQPVPIGVP--GELYVGGDGLALGY 337

Query: 517 FKNEEKTKEVYKVDD---KGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGK 573
               E T E + V D    G R + TGD+ +   DG +E + R    VK++ G  + LG+
Sbjct: 338 LNRPELTAERF-VPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDRQVKIR-GFRIELGE 395

Query: 574 VEAALIVSPYV 584
           +E AL+  P V
Sbjct: 396 IEQALLQHPGV 406

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 63.5 bits (155), Expect = 2e-10
 Identities = 58/221 (26%), Positives = 91/221 (41%), Gaps = 25/221 (11%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
            TY          A+GL +LG ++ + V +      E+ +A  G  RR     T      
Sbjct: 51  YTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYT 110

Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
              +      +    +I  S  + KL  L+        V+ +D      +          
Sbjct: 111 PAEIAKQAKASGAKLIITQSCYVDKLKGLAEDDGVT--VVTIDDPPEGCL---------- 158

Query: 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA-VMTI 285
              F+++     EN +        DV  + Y+SG+TGLPKGVM+TH  ++ +V+  V   
Sbjct: 159 --HFSEL-TQADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGE 215

Query: 286 VPDLG--SKDVYLAYLPLAHVLELVAEN--LIAG--VGSAI 320
            P+L   S DV L  LP+ H+  L   N  L+ G  VG+AI
Sbjct: 216 NPNLYFHSDDVILCVLPMFHIYSL---NSVLLCGLRVGAAI 253

Length = 537

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 63.4 bits (155), Expect = 2e-10
 Identities = 39/174 (22%), Positives = 74/174 (42%), Gaps = 19/174 (10%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           LTY +  E     A  L   G    + V I+A  R E+  A+ G F+     V +     
Sbjct: 29  LTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYV 88

Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMD-----ANIPSAVSSVEQ 221
           E+ L Y L++++   ++   +   ++ ++  +L  ++ ++ ++       +P AV     
Sbjct: 89  EDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVD---- 144

Query: 222 SGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNV 275
                   + D   L   +P       S D   ++YT G+TG+PKGVM    ++
Sbjct: 145 --------YED--ALAAGSPERDFGERSPDDLYLLYTGGTTGMPKGVMWRQEDI 188

Length = 533

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 63.2 bits (154), Expect = 2e-10
 Identities = 99/408 (24%), Positives = 143/408 (35%), Gaps = 127/408 (31%)

Query: 205 VICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGL 264
           VI +DA +P  V +      W               P +A+      +A + YTSGST +
Sbjct: 158 VIAVDA-VPDEVGAT-----WV--------------PPEAN---EDTIAYLQYTSGSTRI 194

Query: 265 PKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGT 324
           P GV +TH N+   V  V+  + +    D  +++LP  H + L+   L A +G  I + +
Sbjct: 195 PAGVQITHLNLPTNVLQVIDAL-EGQEGDRGVSWLPFFHDMGLITVLLPALLGHYITFMS 253

Query: 325 PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKK---LFD 381
           P                 A V RP            +R+  RK     G  S      F+
Sbjct: 254 PA----------------AFVRRP---------GRWIRELARKPGGTGGTFSAAPNFAFE 288

Query: 382 LAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFIN 441
            A AR             GL K     L  S V+ +L        +G  P+S  + R  N
Sbjct: 289 HAAAR-------------GLPKDGEPPLDLSNVKGLL--------NGSEPVSPASMRKFN 327

Query: 442 ICLGAPIG-------QGYGLTETC----------------------AGGTFSEVDDSSVG 472
               AP G         YG+ E                          G F EV   +  
Sbjct: 328 EAF-APYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPN 386

Query: 473 RVGAPLPCSFIKLIDW-----PEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVY 527
            V A +    + + +W     PE      D  +  GEI + G N+  GY+   E+T   +
Sbjct: 387 AV-AQVSAGKVGVSEWAVIVDPETASELPDGQI--GEIWLHGNNIGTGYWGKPEETAATF 443

Query: 528 K--------------VDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
           +                D    W  TGD G V+ DG L I  R KD+V
Sbjct: 444 QNILKSRLSESHAEGAPDDA-LWVRTGDYG-VYFDGELYITGRVKDLV 489

Length = 631

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 62.2 bits (151), Expect = 5e-10
 Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 7/76 (9%)

Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL----GSKDVYLAYLPLAHV-- 304
           DVA IMY+SG+TG  KGV++TH N++A V   +          GS +VYLA LP+ H+  
Sbjct: 199 DVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYG 258

Query: 305 LELVAENLIAGVGSAI 320
           L L    L++ +GS I
Sbjct: 259 LSLFVVGLLS-LGSTI 273

Length = 560

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 61.3 bits (149), Expect = 7e-10
 Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 12/169 (7%)

Query: 420 GRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTET--CAGGTFSEVDDSSVGRVGAP 477
            ++R   S G PL+ +  R+    LG  I   YG TET    G   +   +   G +G P
Sbjct: 205 LKLRVASSAGEPLNPEVVRWFQANLGVTIHDHYGQTETGMPVGNHHALAHEVRAGSMGLP 264

Query: 478 LPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAG--PNVTVGYFKNEEKTKEVYKVDDKGMR 535
           LP   I ++D  + G   +D    +  I +A        GY+ + EKT E+        R
Sbjct: 265 LPGYRIAVLD--DDGQPLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELIA-----GR 317

Query: 536 WFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
           W+ TGD+ +   DG    I R  D++    G  +    VE+AL+  P V
Sbjct: 318 WYVTGDLVERDEDGYFWFIGRADDVIISA-GYRIGPFDVESALLEHPAV 365

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 61.6 bits (150), Expect = 8e-10
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 22/143 (15%)

Query: 452 YGLTETCAGGTFS---EVDD----SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMP--- 501
           +G+TET    TF+   + DD    S    VG P+P +  K+ D+  G        +P   
Sbjct: 360 WGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETG------ELLPLGA 413

Query: 502 RGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
            GEIV+  P++  GY+   E T E    D     W +TGD+G++   G L  + R+K+++
Sbjct: 414 EGEIVVRTPSLLKGYWNKPEATAEAL-RDG----WLHTGDIGKIDEQGFLHYLGRRKEML 468

Query: 562 KLQHGEYVSLGKVEAALIVSPYV 584
           K+  G  V   +VEA L   P V
Sbjct: 469 KVN-GMSVFPSEVEALLGQHPAV 490

Length = 567

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score = 60.3 bits (147), Expect = 9e-10
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 6/73 (8%)

Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAE 310
           D A+I++TSG+TG PKGV +TH N+LA+   +      L   D  L  +PL H+      
Sbjct: 3   DPALILHTSGTTGRPKGVPLTHKNLLASARNI-AKSHKLTPSDRCLNVMPLFHI-----H 56

Query: 311 NLIAGVGSAIGYG 323
            LI  + + +  G
Sbjct: 57  GLIVSLLATLLAG 69

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 61.3 bits (149), Expect = 9e-10
 Identities = 105/505 (20%), Positives = 182/505 (36%), Gaps = 116/505 (22%)

Query: 119 FASGLA-QLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNET 177
            A  L  +LG   ++RV       AE    L            +   L  + + + +N  
Sbjct: 51  LAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHA 110

Query: 178 EVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILG 237
           E   ++   +  ++L ++  +   V+ V+ +  +  +  ++       K+ S+ +  + G
Sbjct: 111 EDEVIVADPRLAEQLGEILKECPCVRAVVFIGPS-DADSAAAHMPEGIKVYSY-EALLDG 168

Query: 238 RENPVDADYPV--SADVAVIMYTSGSTGLPKGVMMTHG-------NVLATVSAVMTIVPD 288
           R      D+P       A I Y++G+TG PKGV+ +H        ++  T S  +T    
Sbjct: 169 R--STVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVT---- 222

Query: 289 LGSKDVYLAYLPLAHVLELVAENLIAGVG-SAIGYGTPLTLTDTSSKIKKGTQGDASVLR 347
               + +L  +P+ HVL         GV  +A   GTPL                  +  
Sbjct: 223 --HGESFLCCVPIYHVLSW-------GVPLAAFMSGTPLVFPG------------PDLSA 261

Query: 348 PTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWN 407
           PT+   +   + RV  GV                         +   W        L+ +
Sbjct: 262 PTLAKIIATAMPRVAHGV-----------------------PTL---WIQ------LMVH 289

Query: 408 LLVFSKVRAILGGRIRFILSGGAPLSAD-----TQRFINICLGAPIGQGYGLTETCAGGT 462
            L     R  L    + I  GG+ +         +R+     G  +   +G+TET   GT
Sbjct: 290 YLKNPPERMSL----QEIYVGGSAVPPILIKAWEERY-----GVDVVHVWGMTETSPVGT 340

Query: 463 FS--------EVDDS---SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPN 511
            +        E   +   S GR  A L    +        G +   +    GEI + G  
Sbjct: 341 VARPPSGVSGEARWAYRVSQGRFPASLEYRIV------NDGQVMESTDRNEGEIQVRGNW 394

Query: 512 VTVGYFKNEEKTK-------EVYKVDDKGMR-----WFYTGDVGQVHADGCLEIIDRKKD 559
           VT  Y+ +  +             V+D   R     W  TGDVG V  DG L I DR +D
Sbjct: 395 VTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARD 454

Query: 560 IVKLQHGEYVSLGKVEAALIVSPYV 584
           +++   GE++   ++E  ++ +P V
Sbjct: 455 VIR-SGGEWIYSAQLENYIMAAPEV 478

Length = 576

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 61.4 bits (149), Expect = 1e-09
 Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 6/82 (7%)

Query: 503 GEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVK 562
           GEIV+ G  V  GY KN +  +E +        WF++GD+G  H DG +EI DR KDI+ 
Sbjct: 403 GEIVMRGNMVMKGYLKNPKANEEAFANG-----WFHSGDLGVKHPDGYIEIKDRSKDII- 456

Query: 563 LQHGEYVSLGKVEAALIVSPYV 584
           +  GE +S  +VE  +   P V
Sbjct: 457 ISGGENISSLEVENVVYTHPAV 478

Length = 567

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 83/346 (23%), Positives = 125/346 (36%), Gaps = 98/346 (28%)

Query: 244 ADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAH 303
              P+  DVA+++ TSG+TG PKG M+T   + A+  A       LG    +L  LP  H
Sbjct: 29  VGEPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHD---RLGGPGQWLLALPAHH 85

Query: 304 V--LELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRV 361
           +  L+++  ++IAG         P+ L D S+                   ++P  +  +
Sbjct: 86  IAGLQVLVRSVIAGS-------EPVEL-DVSAGFD--------------PTALPRAVAEL 123

Query: 362 RDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGR 421
             G R        L+K L D A    L+ ++                       A+L G 
Sbjct: 124 GGGRRYTSLVPMQLAKALDDPAATAALAELD-----------------------AVLVG- 159

Query: 422 IRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCS 481
                  G P  A          G  + + YG++ET  G  +           G PL   
Sbjct: 160 -------GGPAPAPVLDAAA-AAGINVVRTYGMSETSGGCVYD----------GVPLDGV 201

Query: 482 FIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMR---WFY 538
            +++ D               G I + GP +  GY +N         VD        WF 
Sbjct: 202 RVRVED---------------GRIALGGPTLAKGY-RN--------PVDPDPFAEPGWFR 237

Query: 539 TGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
           T D+G +  DG L ++ R  D +    G  V    VEAAL   P V
Sbjct: 238 TDDLGALD-DGVLTVLGRADDAIS-TGGLTVLPQVVEAALATHPAV 281

Length = 358

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 60.8 bits (148), Expect = 1e-09
 Identities = 49/166 (29%), Positives = 73/166 (43%), Gaps = 14/166 (8%)

Query: 452 YGLTETCAGGTFSEVDDSSVGRV--GAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAG 509
           YG +E     T++EV+  +      G PL  +   ++D     +L        GE+ I G
Sbjct: 246 YGPSEDTTYSTYAEVEPGASRTPSIGRPLAGTQAYVLD----AHLQPVPVGVPGELYIGG 301

Query: 510 PNVTVGYFKNEEKTKEVYKVD----DKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQH 565
             V  GY    E T E +  +      G R + TGD+ +  ADG LE + R  D VK++ 
Sbjct: 302 AGVARGYLGRPELTAERFLPNPFAGSPGERLYRTGDLVRRRADGQLEYLGRIDDQVKVR- 360

Query: 566 GEYVSLGKVEAALIVSPYVDN---IMMHADPFHSYCVALVVASQPA 608
           G  + LG++EAAL   P V     + +         VA +VA   A
Sbjct: 361 GFRIELGEIEAALRSIPGVAEAVVVAIGDAAGDRQLVAYIVADPGA 406

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional

 Score = 61.8 bits (150), Expect = 1e-09
 Identities = 79/402 (19%), Positives = 139/402 (34%), Gaps = 71/402 (17%)

Query: 46  FTSLVSTSWE---GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLG 102
           F   +   +    G+ +L E++E+S   H     LG                  +    G
Sbjct: 412 FALNLPREYNPLAGVRSLGEMWERSVTRHSTFRCLG------------------QTSESG 453

Query: 103 EYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIY 162
           E EWLTYG          SGL  LG +  + + +  +      +    C     T + + 
Sbjct: 454 ESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGFTTLPLV 513

Query: 163 ASLGEEALCYSLNETEVTTVI-----------CGSKELKKLVDLSGQLDTVKHVICMDAN 211
                  +   ++E ++  V            C S++L+ +V      D   H +  D N
Sbjct: 514 GK--GSTMRTLIDEHKIKVVFADRNSVAAILTCRSRKLETVVYTHSFYDEDDHAVARDLN 571

Query: 212 IPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMY-----TSGSTGLPK 266
           I              +  +  V+  GR  PV           V  Y     TS S     
Sbjct: 572 I-------------TLIPYEFVEQKGRLCPVPLK-EHVTTDTVFTYVVDNTTSASGDGLA 617

Query: 267 GVMMTHGNVLATVSA-VMT-IVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGT 324
            V +TH +VL  +S  VMT ++P    K + + + P A +   V       V     +G+
Sbjct: 618 VVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRVF------VLGLFAHGS 671

Query: 325 PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAY 384
            +   D +       Q      +PT++ + P++    R  + +  +    +   LF+ A+
Sbjct: 672 AVATVDAAH-----LQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAF 726

Query: 385 ARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFIL 426
             R   IN         +  L   + F   + +LGG +  I+
Sbjct: 727 QLRSRLIN-----IHRRDSSLLRFIFFRATQELLGGCVEKIV 763

Length = 1452

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 60.7 bits (148), Expect = 1e-09
 Identities = 44/190 (23%), Positives = 65/190 (34%), Gaps = 51/190 (26%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
            TY +    +   ASGLA LG  K +RV I+     E  VAL    +     V I++  G
Sbjct: 8   WTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGFG 67

Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
            +A+   L + E   +I     L++                                   
Sbjct: 68  PDAVATRLQDAEAKVLITADGFLRR----------------------------------- 92

Query: 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV 286
                     G+         +  D A+I+YTSG+TG PKG + TH       +  +   
Sbjct: 93  ----------GKR------VDLKDDPAMIIYTSGTTGKPKGTVHTHAGFPVKAAKDIGFC 136

Query: 287 PDLGSKDVYL 296
            DL   D  L
Sbjct: 137 FDLKPGDRLL 146

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 60.8 bits (148), Expect = 1e-09
 Identities = 66/225 (29%), Positives = 99/225 (44%), Gaps = 42/225 (18%)

Query: 422 IRFILSGGAPL-SADTQRFINICLGAPIGQGYGLTETCAGGT-----FSEVDDSSVGRVG 475
           +R+++  GAP+  AD +R +   LG  + Q +GL E     T       + +D    R+G
Sbjct: 282 LRYVIYAGAPMYRADQKRALAK-LGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIG 340

Query: 476 APLPCSF------IKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529
               C F      +++ D  EG  L    P   GEI + GP V  GY+ N E   + ++ 
Sbjct: 341 ---TCGFERTGMEVQIQD-DEGREL---PPGETGEICVIGPAVFAGYYNNPEANAKAFRD 393

Query: 530 DDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLG------KVEAALIVSPY 583
                 WF TGD+G + A G L I  R  D+       Y+S G      ++E  L+  P 
Sbjct: 394 G-----WFRTGDLGHLDARGFLYITGRASDM-------YISGGSNVYPREIEEKLLTHPA 441

Query: 584 VDN--IMMHADP-FHSYCVALVVASQPA-VEEWAAKQGIVGKNAR 624
           V    ++   DP +    VA+ VA   A V+E      + GK AR
Sbjct: 442 VSEVAVLGVPDPVWGEVGVAVCVARDGAPVDEAELLAWLDGKVAR 486

Length = 528

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 60.9 bits (149), Expect = 1e-09
 Identities = 66/236 (27%), Positives = 96/236 (40%), Gaps = 53/236 (22%)

Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
           G+   +TY +    +C FA+ L  LG KK +RVAI+     E  VA+  C R       +
Sbjct: 94  GDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVV 153

Query: 162 YASLGEEALCYSLNETEVTTVIC------GSK--ELKKLVDLS-GQLDTVKHVICM---D 209
           +     EAL   + +     VI       G K   LK  VD +     +V+ VI +    
Sbjct: 154 FGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTG 213

Query: 210 ANIPSAVSSVEQSGRWKITSFADV---QILGREN------PVDADYPVSADVAVIMYTSG 260
            ++          GR       D+   +++   +      P+DA+ P+      I+YTSG
Sbjct: 214 GDVDW------VEGR-------DLWWHELVAGASDECEPEPMDAEDPL-----FILYTSG 255

Query: 261 STGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV--------------YLAYLPLA 302
           STG PKGV+ T G  L   +  M  V D    DV              Y+ Y PLA
Sbjct: 256 STGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVYGPLA 311

Length = 637

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 12/146 (8%)

Query: 446 APIGQGYGLTETCAGGTFSEVDDSSVGR-----VGAPLPCSFIKLIDWPEGGYLTSDSPM 500
           A I   YG TE     T  ++    + +     +G   P   + ++D  EG  L      
Sbjct: 285 ATIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMD-EEGEPL---PEG 340

Query: 501 PRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDI 560
            +GEIVI GP+V+ GY  N EKT E +    +G   + TGD G +  DG L    R    
Sbjct: 341 EKGEIVIVGPSVSKGYLNNPEKTAEAF-FSHEGQPAYRTGDAGTI-TDGQLFYQGRLDFQ 398

Query: 561 VKLQHGEYVSLGKVEAALIVSPYVDN 586
           +KL HG  + L  +E  L  S Y+++
Sbjct: 399 IKL-HGYRIELEDIEFNLRQSSYIES 423

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 60.3 bits (146), Expect = 2e-09
 Identities = 59/238 (24%), Positives = 100/238 (42%), Gaps = 44/238 (18%)

Query: 107 LTYGQAFETICNFASGL-AQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASL 165
           +TY +A + +  FA+ L  +L  KK +RVA+      ++ +A  G  R  +TVV +    
Sbjct: 51  ITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLY 110

Query: 166 GEEALCYSLNE-------------TEVTTVICGSKELKKLV--DLSGQLD---------T 201
               L + L +             T V  VI  +  +K+++   L   L           
Sbjct: 111 TPRELKHQLIDSGASVLVVIDNFGTTVQQVIADT-PVKQVITTGLGDMLGFPKAALVNFV 169

Query: 202 VKHV--ICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTS 259
           VK+V  +  +  I  A+             F +   LGR++ +        D+A + YT 
Sbjct: 170 VKYVKKLVPEYRINGAIR------------FREALALGRKHSMPTLQIEPDDIAFLQYTG 217

Query: 260 GSTGLPKGVMMTHGNVLATVSAVMTIVPDLGS----KDVYLAYLPLAHVLELVAENLI 313
           G+TG+ KG M+TH N++A +      +   G      +V +  LPL H+  L A  L+
Sbjct: 218 GTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLV 275

Length = 560

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 60.4 bits (147), Expect = 2e-09
 Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 27/212 (12%)

Query: 99  LHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVA-----LQGCFR 153
           L LG+    TYGQ  + I  +      LG    + VA+ +  R E  +A     L G  R
Sbjct: 31  LVLGDTRL-TYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRR 89

Query: 154 RNVTVVTIYASLGEEALCYSLNETEVTT-VICGSKELKKLVDLSGQLDTVKHVICMDANI 212
              T +    SL + A  Y L +  ++T ++  +  +++ + L  ++ ++KHV+ +   +
Sbjct: 90  ---TALHPLGSLDDHA--YVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGP-V 143

Query: 213 PSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTH 272
           P  V  +          F    +      V A   +  D+A + YT G+TG PKGVM TH
Sbjct: 144 PDGVDLLAA-----AAKFGPAPL------VAAA--LPPDIAGLAYTGGTTGKPKGVMGTH 190

Query: 273 GNVLATVSAVMTIVPDLGSKDVYLAYLPLAHV 304
            + +AT++ +     +  +   +L   PL+H 
Sbjct: 191 RS-IATMAQIQLAEWEWPADPRFLMCTPLSHA 221

Length = 524

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 59.4 bits (144), Expect = 3e-09
 Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 17/169 (10%)

Query: 422 IRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAG-GTFSEVDDSSVGRVGAPLPC 480
           +R+  + G PL+ +         G  + +G+G TET     TF  ++    G +G P P 
Sbjct: 303 LRYCTTAGEPLNPEVFNTFKEKTGIKLMEGFGQTETTLTIATFPWMEPKP-GSMGKPSPG 361

Query: 481 SFIKLIDWPEGGYLTSDSPMPRGEIVI-----AGPNVTVGYFKNEEKTKEVYKVDDKGMR 535
             I +ID P+G    S      GEIVI         + +GY+++ E+T EV+  D     
Sbjct: 362 YDIDIID-PDG---KSCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWH-DG---- 412

Query: 536 WFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
           +++TGD   +  DG L  + R  D++K   G  +   +VE+ALI  P V
Sbjct: 413 YYHTGDTAWMDEDGYLWFVGRADDLIK-SSGYRIGPFEVESALIQHPAV 460

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 57.8 bits (140), Expect = 9e-09
 Identities = 70/259 (27%), Positives = 118/259 (45%), Gaps = 35/259 (13%)

Query: 422 IRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDD--SSVGRVGAPLP 479
           +R ++   AP  AD +R +    G  I + YG TE+ A  TF+  +D  S  G VG   P
Sbjct: 273 LRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAV-TFATSEDALSHPGTVGKAAP 331

Query: 480 CSFIKLIDWPEGGYLTSDSPMPRGEI------VIAGPNVTVGYFKNEEKTKEVYKVDDKG 533
            + ++ +D  E G      P+P+GEI      +   P+ T  Y    EK  E+ +     
Sbjct: 332 GAELRFVD--EDG-----RPLPQGEIGEIYSRIAGNPDFT--YHNKPEKRAEIDRGG--- 379

Query: 534 MRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMH--A 591
             +  +GDVG + ADG L + DRK+D+V +  G  +   ++EA L   P V +  +    
Sbjct: 380 --FITSGDVGYLDADGYLFLCDRKRDMV-ISGGVNIYPAEIEAVLHAVPGVHDCAVFGIP 436

Query: 592 DPFHSYCVALVVASQPAVE-EWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTA 650
           D      +  VV  QP    + A  +  +   ARL  +++P  I++++     ++G    
Sbjct: 437 DAEFGEALMAVVEPQPGATLDEADIRAQL--KARLAGYKVPKHIEIMAELPREDSG---- 490

Query: 651 ALKIKREAIRKAFADDLAR 669
             KI +  +R  +  +  R
Sbjct: 491 --KIFKRRLRDPYWANAGR 507

Length = 509

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 57.2 bits (139), Expect = 1e-08
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 23/88 (26%)

Query: 241 PVDADYPVSA-------------------DVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281
           P+D   PV                     D A ++YTSGSTG PKGV++TH N+   + A
Sbjct: 71  PIDPSAPVERLQFIIEDSGATVVLTSSPDDPAYVIYTSGSTGKPKGVVITHRNICNFLRA 130

Query: 282 VMTIVPDLGSKDVYLAYLPLA---HVLE 306
              I+  +   D  L +  +A    +LE
Sbjct: 131 EGAILG-IRPGDRVLQFASIAFDVSILE 157

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 57.8 bits (140), Expect = 1e-08
 Identities = 54/174 (31%), Positives = 74/174 (42%), Gaps = 26/174 (14%)

Query: 419 GGRIRFILSGGAP---LSADTQRFINICLGAPIGQGYGLTETCA--GGTFSEVDDSSVGR 473
             R+R  L  G P    +A  +RF     G  +  GYG TET      T       S+GR
Sbjct: 293 AHRVRVALGPGVPAALHAAFRERF-----GVDLLDGYGSTETNFVIAVTHGSQRPGSMGR 347

Query: 474 VGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVI--AGP-NVTVGYFKNEEKTKEVYKVD 530
           + AP    F   +       L    P   GE+++    P     GYF   EKT E ++  
Sbjct: 348 L-AP---GFEARVVDEHDQELPDGEP---GELLLRADEPFAFATGYFGMPEKTVEAWR-- 398

Query: 531 DKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
                WF+TGD     ADG    +DR KD ++ + GE +S  +VE  L+  P V
Sbjct: 399 ---NLWFHTGDRVVRDADGWFRFVDRIKDAIR-RRGENISSFEVEQVLLSHPAV 448

Length = 542

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 57.6 bits (140), Expect = 1e-08
 Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 19/194 (9%)

Query: 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYAS 164
           E  TY +  E    FA+ L +LG +K +RV IF     E + AL G  +    V  ++ +
Sbjct: 72  EKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEA 131

Query: 165 LGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGR 224
             EEA+   L ++E   +I     L++    +  L ++KHV+ +  ++     +++ +  
Sbjct: 132 FMEEAVRDRLEDSEAKVLITTPALLERKP--ADDLPSLKHVLLVGEDVEEGPGTLDFNAL 189

Query: 225 WKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVL---ATVSA 281
            +  S  +  I       D +     D A++ YTSGSTG PKGV+  H  +L    T   
Sbjct: 190 MEQAS-DEFDIE----WTDRE-----DGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKY 239

Query: 282 VMTIVPDLGSKDVY 295
           V+    DL   DVY
Sbjct: 240 VL----DLHEDDVY 249

Length = 570

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 57.3 bits (138), Expect = 2e-08
 Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 20/201 (9%)

Query: 120 ASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179
           A+ L + G+ K+  VA++     +  +   G  +    VV +    GE AL + L+++  
Sbjct: 60  AAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGA 119

Query: 180 TTVICGSKELKKLVDLS------GQLDTVKHVICMDAN---IPSAVSSVEQSGRWKITSF 230
             +I  + +L  L+ ++      G LD +  ++C D N   + +  + +    R  I ++
Sbjct: 120 RLLI--TSDLAALLPMALKFLEKGLLDRL--IVCEDDNWGKVGTPQAPIPADPR--IVTY 173

Query: 231 ADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV----MTIV 286
           AD  + G   P +       DVA++ YT G+TGLPKG M+THGN+ + VS          
Sbjct: 174 ADF-VKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSR 232

Query: 287 PDLGSKDVYLAYLPLAHVLEL 307
              G  +  +  LPL H+  L
Sbjct: 233 ATRGDVERVICVLPLFHIYAL 253

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 56.7 bits (137), Expect = 2e-08
 Identities = 47/189 (24%), Positives = 65/189 (34%), Gaps = 57/189 (30%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           L+Y +  E     A+ LA LG K  +RVA       E  VA+   +R     V ++ + G
Sbjct: 1   LSYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFG 60

Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
            +A+ Y L  +    V+             G+LD                          
Sbjct: 61  PKAIEYRLGHSGAKVVVTN-------AANRGKLDD------------------------- 88

Query: 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV 286
                                   D+   MYTSG+TGLPKGV +   N LA   A M   
Sbjct: 89  ------------------------DLFAQMYTSGTTGLPKGVPVPL-NALAAFYAYMRYA 123

Query: 287 PDLGSKDVY 295
            DL   DV+
Sbjct: 124 IDLRDDDVF 132

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 56.4 bits (136), Expect = 3e-08
 Identities = 54/211 (25%), Positives = 85/211 (40%), Gaps = 33/211 (15%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           LTY +  + +C  A+ L  +G KK + V I+     E  +A+  C R       ++A   
Sbjct: 121 LTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFS 180

Query: 167 EEALCYSLNETEVTTVIC------GSK--ELKKLVDLS---GQLDTVKHVICMDANIPSA 215
            E+L   + + +   VI       G K   LK +VD +      + V   IC+      A
Sbjct: 181 AESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLA 240

Query: 216 VSSVEQSGRWKITSFADVQILGRE---NPVDADYPVSADVA--------VIMYTSGSTGL 264
           +    +  +W+          GR+     V  +YP   +V          ++YTSGSTG 
Sbjct: 241 MK--REDTKWQE---------GRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGK 289

Query: 265 PKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295
           PKGV+ T G  +   +       D    DVY
Sbjct: 290 PKGVLHTTGGYMVYTATTFKYAFDYKPTDVY 320

Length = 666

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 55.9 bits (135), Expect = 3e-08
 Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 18/184 (9%)

Query: 406 WNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSE 465
           W + +   + A    R+R  +S G PL+ +    +    G  I  GYG TET A    S 
Sbjct: 186 WRMFIQQDL-AQYDVRLREAVSAGEPLNPEVIERVKKAWGLTIRDGYGQTETTAMIGNSP 244

Query: 466 VDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVI-AGPN---VTVGYFKNEE 521
                 G +G PLP   + L+D  EG  +    P+  GEI +  G     + +GY  + E
Sbjct: 245 GQKVKPGSMGRPLPGYRVVLLD-DEGKEI----PVTEGEIALDLGDRPIGLMLGYMGDPE 299

Query: 522 KTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEY-VSLGKVEAALIV 580
           KT   +        ++ TGD      DG L  + R  D+ K    +Y +S  +VE+AL+ 
Sbjct: 300 KTAAAF-----RGGYYRTGDKAYRDEDGYLWFVGRADDVFK--SSDYRISPFEVESALLE 352

Query: 581 SPYV 584
            P V
Sbjct: 353 HPAV 356

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 55.8 bits (135), Expect = 4e-08
 Identities = 56/216 (25%), Positives = 87/216 (40%), Gaps = 25/216 (11%)

Query: 99  LHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTV 158
           L  G     TY +    +   A GLA+LG  + + V+       E+ V    C R    +
Sbjct: 48  LGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVL 107

Query: 159 VTIYASLGEEALCYSLNETEVTTVICGSKELKK------LVDLSGQLDTVKHVICMDANI 212
             +     E  L + L   E   ++   K  +          L  +L  ++HV+ +  + 
Sbjct: 108 NPLMPIFRERELSFMLKHAESKVLVV-PKTFRGFDHAAMARRLRPELPALRHVVVVGGDG 166

Query: 213 PSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTH 272
             +  ++  +  W+        IL R  P   D     DV  ++YTSG+TG PKGVM T 
Sbjct: 167 ADSFEALLITPAWEQEP-DAPAILARLRP-GPD-----DVTQLIYTSGTTGEPKGVMHTA 219

Query: 273 GNVLATVSAVMTIVP-----DLGSKDVYLAYLPLAH 303
             ++A       IVP      LG+ DV L   P+AH
Sbjct: 220 NTLMA------NIVPYAERLGLGADDVILMASPMAH 249

Length = 547

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 56.5 bits (137), Expect = 4e-08
 Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 29/164 (17%)

Query: 422  IRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCS 481
            +R++ +G   +  +T++      G  I +GYG+TET      +    +  G VG  LP  
Sbjct: 909  LRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMHNKAGTVGRLLP-- 966

Query: 482  FIKLIDW--------PEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKG 533
                I++         EGG L            + GPNV +GY + E     V +    G
Sbjct: 967  ---GIEYRLEPVPGIDEGGRLF-----------VRGPNVMLGYLRAENPG--VLEPPADG 1010

Query: 534  MRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAA 577
              W+ TGD+  +  +G + I  R K   K+  GE +SL  VE  
Sbjct: 1011 --WYDTGDIVTIDEEGFITIKGRAKRFAKIA-GEMISLAAVEEL 1051

Length = 1140

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 55.3 bits (134), Expect = 6e-08
 Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 7/134 (5%)

Query: 425 ILSGGAPLSADT-QRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPL-PCSF 482
           I SGGA  S    +  + +     +    G +ET  GG    V   +V   G        
Sbjct: 301 IASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGG-SGTVAKGAVHTGGPRFTIGPR 359

Query: 483 IKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDV 542
             ++D  +G  +   S    G I   G  + +GY+K+ EKT E +   D G+R+   GD 
Sbjct: 360 TVVLD-EDGNPVEPGSG-EIGWIARRGH-IPLGYYKDPEKTAETFPTID-GVRYAIPGDR 415

Query: 543 GQVHADGCLEIIDR 556
            +V ADG + ++ R
Sbjct: 416 ARVEADGTITLLGR 429

Length = 533

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 55.7 bits (135), Expect = 6e-08
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVA 309
           D AVI++TSGS G PKGV+++H N+LA  + V   + D   +D     LP+ H   L  
Sbjct: 794 DPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-DFSPEDKVFNALPVFHSFGLTG 851

Length = 1140

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 55.9 bits (135), Expect = 6e-08
 Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 10/81 (12%)

Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV---MTIVPDLGSKDVYLAYLPLAHVLEL 307
           D+A + YTSGST LPKGV ++HGN++A    +     I  DL   DV +++LPL H +  
Sbjct: 167 DIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGI--DLNPDDVIVSWLPLYHDM-- 222

Query: 308 VAENLIAGVGSAIGYGTPLTL 328
               LI G+   I  G P  L
Sbjct: 223 ---GLIGGLLQPIFSGVPCVL 240

Length = 4334

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 55.2 bits (133), Expect = 6e-08
 Identities = 60/272 (22%), Positives = 121/272 (44%), Gaps = 44/272 (16%)

Query: 404 LLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTF 463
            LW +   SK RA L   ++ +  GGA  SA   R +    G  + Q +G+ E      +
Sbjct: 284 ALW-MQAASKSRADLSS-LKLLQVGGAKFSAAAARRVPAVFGCQLQQVFGMAEGLV--NY 339

Query: 464 SEVDDSS---VGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGE---IVIAGPNVTVGYF 517
           + +DD +       G P+     ++    + G     +P+  GE   ++  GP    GY+
Sbjct: 340 TRLDDPAEIIFTTQGRPM-SPDDEVRVVDDHG-----NPVAPGETGMLLTRGPYTFRGYY 393

Query: 518 KNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAA 577
           K  E     +  D +G  ++YTGD+ ++  +G + ++ R KD +  + GE ++  ++E  
Sbjct: 394 KAPEHNAAAF--DAEG--FYYTGDLVRLTPEGYIVVVGRAKDQIN-RGGEKIAAEEIENL 448

Query: 578 LIVSPYVDNIMMHA--DPF--HSYCVALVVASQ----PAVEEWAAKQGIVGKNARLDKFE 629
           L+  P V +  + +  D       C  +VV         +  +  ++G+        +++
Sbjct: 449 LLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPALKAAQLRRFLRERGLA-------EYK 501

Query: 630 IPAKIKLL-SYPWTSEAGLVTAALKIKREAIR 660
           +P +++ + S P       +TA  K+ ++A+R
Sbjct: 502 LPDRVEFVDSLP-------LTAVGKVDKKALR 526

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 55.3 bits (133), Expect = 7e-08
 Identities = 99/436 (22%), Positives = 149/436 (34%), Gaps = 99/436 (22%)

Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
           G+   LTY Q    +  FAS L  LG  + +RV I+    AE   A+  C R       +
Sbjct: 79  GQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVV 138

Query: 162 YASLGEEALCYSLNETEVTTVIC------GSK--ELKKLVD--LSGQLDTVKHVICMDAN 211
           +      +L   +++     ++       G K    K L+D  ++       HV+ +D  
Sbjct: 139 FGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRG 198

Query: 212 IPSAVSSVEQSGRWKITSFADVQILG-RENPVDADYPV----SADVAVIMYTSGSTGLPK 266
           +             ++    DV     R    DA  PV    S + + I+YTSG+TG PK
Sbjct: 199 L----------APMRLIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPK 248

Query: 267 GVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVL---ELVAENLIAGVGSAIGYG 323
           GV    G     ++  M  +  + +  V  +   +  V+    +V   L+AG  + +  G
Sbjct: 249 GVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEG 308

Query: 324 TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLA 383
            P             T  D  V    V           R GVR    A   +        
Sbjct: 309 LP-------------TNPDPGVWWSIVE----------RYGVRTMFSAPTAI-------- 337

Query: 384 YARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC 443
             R L   + +W     L  L W  L                   G PL   T  +I   
Sbjct: 338 --RVLKKQDAAWLRKHDLSSLHWLFL------------------AGEPLDEPTAHWITDG 377

Query: 444 LGAPIGQGYGLTET------CAGGTFSEVDDSSV--GRVGAPLPCSFIKLIDWPEG---- 491
           LG P+   Y  TET         G    +D   V  G  G P+    ++++D   G    
Sbjct: 378 LGKPVIDNYWQTETGWPVLAIMPG----LDLKPVKLGSPGLPMYGYHLRVLDEATGRPCG 433

Query: 492 ----GYLTSDSPMPRG 503
               G LT   P+P G
Sbjct: 434 PNEKGVLTVVPPLPPG 449

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 55.2 bits (133), Expect = 8e-08
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 9/68 (13%)

Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGS---------KDVYLAYLPL 301
           D+AV+ YT G+TGL KG M+THGN++A +  V   +  LG          ++V +A LPL
Sbjct: 208 DIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPL 267

Query: 302 AHVLELVA 309
            H+    A
Sbjct: 268 YHIYAFTA 275

Length = 562

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 50/168 (29%), Positives = 72/168 (42%), Gaps = 9/168 (5%)

Query: 420 GRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVD-DSSVGRVGAPL 478
             +R I S G PL+ +   +    LG PI   +  TET A    +        G +G PL
Sbjct: 207 SSLRHIASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIANYPGIPVKPGSMGRPL 266

Query: 479 PCSFIKLIDWPEGGYLTSDSPMPRGEIVI-AG-PNVTVGYFKNEEKTKEVYKVDDKGMRW 536
           P     +I+    G      P   GE+ +  G P++  GY  NEE+      VD     W
Sbjct: 267 PGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERYAS-SFVDG----W 321

Query: 537 FYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
           + TGD+     DG    + R  D++K   G  V   +VE+AL+  P V
Sbjct: 322 YLTGDLAYRDEDGYFWFVGRADDVIK-TAGHLVGPFEVESALMEHPAV 368

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 54.2 bits (131), Expect = 1e-07
 Identities = 30/79 (37%), Positives = 37/79 (46%), Gaps = 6/79 (7%)

Query: 250 ADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVA 309
            D A  +YTSG+TGLPK  +M+H   L    AV   +  L   DV    LPL H     +
Sbjct: 81  VDPAFYIYTSGTTGLPKAAIMSHRRWLRA-GAVFGGLGLLKPDDVLYLCLPLYH-----S 134

Query: 310 ENLIAGVGSAIGYGTPLTL 328
             L  G  SA+  G  L L
Sbjct: 135 NALTVGWSSALAAGASLAL 153

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 54.0 bits (130), Expect = 2e-07
 Identities = 62/271 (22%), Positives = 105/271 (38%), Gaps = 29/271 (10%)

Query: 401 LEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAG 460
           L +L W       +R           SGGA   A   R  +    A +   YGLTE    
Sbjct: 265 LAQLDWPESAAPSLR-------YLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRS 317

Query: 461 GTFS-EVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKN 519
                E  D     +G  +P + + ++   +G           GE+V  G  V +GY+ +
Sbjct: 318 TYLPPEEVDRRPDSIGKAIPNAEVLVLR-EDGSECAPGEE---GELVHRGALVAMGYWND 373

Query: 520 EEKTKEVYKVDDK--------GMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSL 571
            EKT E ++             +   ++GD  +   +G L  + R+ +++K   G  VS 
Sbjct: 374 PEKTAERFRPLPPFPGELHLPELA-VWSGDTVRRDEEGFLYFVGRRDEMIKTS-GYRVSP 431

Query: 572 GKVEAALIVSPYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQGIVGK-NARLDKFEI 630
            +VE     +  V   +    P  +   A+V+   P   E   +  ++ +  ARL  + +
Sbjct: 432 TEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEELDRAALLAECRARLPNYMV 491

Query: 631 PAKIKLLSYPWTSEAGLVTAALKIKREAIRK 661
           PA I +       +A    A  KI R+A+ K
Sbjct: 492 PALIHV------RQALPRNANGKIDRKALAK 516

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 54.6 bits (131), Expect = 2e-07
 Identities = 72/261 (27%), Positives = 108/261 (41%), Gaps = 31/261 (11%)

Query: 422  IRFILSGGAPLSADTQRFINICL-GAPIGQGYGLTETCAGGTF----SEVDDS-SVGRVG 475
            +R I+  G  L AD Q  +   L  A +   YG TE     T      E  DS  +GR  
Sbjct: 772  LRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPI 831

Query: 476  APLPCSFIKLIDWPEGGYLTSDSPMP---RGEIVIAGPNVTVGYFKNEEKTKEVYKVDD- 531
            A L C    ++D      L    P+P    GE+ +AG  +  GY      T E +     
Sbjct: 832  ANLAC---YILD----ANL---EPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPF 881

Query: 532  -KGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMH 590
              G R + TGD+ +  ADG +E   R    VKL+ G  + LG++EA L+  P+V    + 
Sbjct: 882  VAGERMYRTGDLARYRADGVIEYAGRIDHQVKLR-GLRIELGEIEARLLEHPWVREAAVL 940

Query: 591  ADPFHSYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTA 650
            A         +V+ S+      A K  +    A L ++ +PA+   L      E   +T 
Sbjct: 941  AVDGKQLVGYVVLESEGGDWREALKAHLA---ASLPEYMVPAQWLAL------ERLPLTP 991

Query: 651  ALKIKREAIRKAFADDLARLY 671
              K+ R+A+    A    + Y
Sbjct: 992  NGKLDRKALPAPEASVAQQGY 1012

Length = 5163

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 39/171 (22%), Positives = 62/171 (36%), Gaps = 30/171 (17%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           LTY Q  E     A+ + +    K+  + ++        VA  G  +     + +  S+ 
Sbjct: 26  LTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVDTSIP 85

Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
            E +   +       VI  ++                              S++  G   
Sbjct: 86  SERIEMIIEAAGPELVIHTAEL-----------------------------SIDAVGTQI 116

Query: 227 ITSFADVQILGRENPVDADYPVSADVAV-IMYTSGSTGLPKGVMMTHGNVL 276
           IT  A  Q      PV  D+ V  D    I+YTSGSTG PKGV ++H N++
Sbjct: 117 ITLSALEQAETSGGPVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLV 167

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 29/150 (19%)

Query: 425 ILSGGAPLSAD-----TQRFINICLGAPIGQGYGLTETCAGGTFS-----EVDDSSVGRV 474
           +  G +P+S        +RF  I       Q YG TE  A    +     + D     R+
Sbjct: 286 VYYGASPMSPVRLAEAIERFGPI-----FAQYYGQTE--APMVITYLRKRDHDPDDPKRL 338

Query: 475 ---GAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDD 531
              G P P   + L+D  +G  +        GEI + GP V  GY+   E+T E ++   
Sbjct: 339 TSCGRPTPGLRVALLD-EDGREVAQGEV---GEICVRGPLVMDGYWNRPEETAEAFRDG- 393

Query: 532 KGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
               W +TGDV +   DG   I+DRKKD++
Sbjct: 394 ----WLHTGDVAREDEDGFYYIVDRKKDMI 419

Length = 524

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 54.4 bits (131), Expect = 2e-07
 Identities = 61/246 (24%), Positives = 98/246 (39%), Gaps = 24/246 (9%)

Query: 420  GRIRFILSGGAPLSADTQ-RFINICLGAPIGQGYGLTETCAGGTF--SEVDDSSVGRVGA 476
              +R + SGG  L A+ + R +       +   YG TET    T    + +D     +G 
Sbjct: 1388 TSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGERSPIGR 1447

Query: 477  PLPCSFIKLIDWPEGGYLTSDSPMPRG---EIVIAGPNVTVGYFKNEEKTKEVYKVD--- 530
            PL     +++D          + +P G   E+ I G  +  GY      T E +  D   
Sbjct: 1448 PLGNVLCRVLD-------AELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLG 1500

Query: 531  DKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDN--IM 588
            + G R + TGD  + +ADG LE + R    VKL+ G  V   +++A L+  P V    ++
Sbjct: 1501 EDGARLYRTGDRARWNADGALEYLGRLDQQVKLR-GFRVEPEEIQARLLAQPGVAQAAVL 1559

Query: 589  MHADPFHSYCVALVVAS-QPAVEEWAAKQGIVGKNARLDKFEIPAK-IKLLSYPWTSEAG 646
            +      +  V           E    K  +    A L ++ +PA+ I+L   P      
Sbjct: 1560 VREGAAGAQLVGYYTGEAGQEAEAERLKAALA---AELPEYMVPAQLIRLDQMPLGPSGK 1616

Query: 647  LVTAAL 652
            L   AL
Sbjct: 1617 LDRRAL 1622

Length = 4334

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 9/82 (10%)

Query: 503 GEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVK 562
           G++ + GP V   YF+ +        VD     WF TGDV  + ADG ++I DR KD++K
Sbjct: 385 GDLQVRGPWVIDRYFRGDASPL----VDG----WFPTGDVATIDADGFMQITDRSKDVIK 436

Query: 563 LQHGEYVSLGKVEAALIVSPYV 584
              GE++S   +E   +  P V
Sbjct: 437 -SGGEWISSIDIENVAVAHPAV 457

Length = 539

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 483 IKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDV 542
           +K+ D   G  L  D     G + + GP V   Y++ + +      +DD G  +F TGDV
Sbjct: 367 MKITD-DAGKELPWDGKTF-GRLKVRGPAVAAAYYRVDGEI-----LDDDG--FFDTGDV 417

Query: 543 GQVHADGCLEIIDRKKDIVKLQHGEYVS 570
             + A G + I DR KD++K   GE++S
Sbjct: 418 ATIDAYGYMRITDRSKDVIK-SGGEWIS 444

Length = 542

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 52.6 bits (127), Expect = 3e-07
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI-YA 163
              TY +  E +   A+GL  LG +  +RVA+  D   E+  A     +     V I  A
Sbjct: 2   RRYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTA 61

Query: 164 SLGEEALCYSLNETEVTTVIC 184
             GEE L + L+ +    ++ 
Sbjct: 62  LRGEE-LAHILDHSGARLIVV 81

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 54.0 bits (130), Expect = 3e-07
 Identities = 69/272 (25%), Positives = 107/272 (39%), Gaps = 36/272 (13%)

Query: 422  IRFILSGGAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTF---SEVDDSSVGRVGAP 477
            +R ++ GG  L  +  R     L    +   YG TET    T       D    GR   P
Sbjct: 1836 LRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLE--GRDSVP 1893

Query: 478  LPCSFIKLIDWPEGGYLTSDS--PMPR---GEIVIAGPNVTVGYFKNEEKTKEVYKVD-- 530
            +      L       Y+   S  P+P    GE+ + G  +  GY      T E +  D  
Sbjct: 1894 IGQPIANL-----STYILDASLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPF 1948

Query: 531  -DKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDN--I 587
               G R + TGD+ +  ADG +E + R    VK++ G  + LG++EA L     V    +
Sbjct: 1949 GTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIR-GFRIELGEIEARLREQGGVREAVV 2007

Query: 588  MMHADPFHSYCVALVVASQPAV----EEWAAKQGIVGKN--ARLDKFEIPAKIKLL-SYP 640
            +          VA VV + P +    E   A + I+  +  A L ++ +PA +  L   P
Sbjct: 2008 IAQDGANGKQLVAYVVPTDPGLVDDDEAQVALRAILKNHLKASLPEYMVPAHLVFLARMP 2067

Query: 641  WTSEAGLVTAALKIKREAIRKAFADDLARLYE 672
             T          K+ R+A+    A +L + Y 
Sbjct: 2068 LTPNG-------KLDRKALPAPDASELQQAYV 2092

Length = 3956

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 53.1 bits (128), Expect = 3e-07
 Identities = 73/281 (25%), Positives = 118/281 (41%), Gaps = 69/281 (24%)

Query: 58  STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETIC 117
            +L ++FEQ+   + D+                    +F  +++GE   +T+ +  E   
Sbjct: 23  QSLVDMFEQAVARYADQ-------------------PAF--INMGEV--MTFRKLEERSR 59

Query: 118 NFASGLA-QLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNE 176
            FA+ L   LG KK +RVA+      ++ +AL G  R  + VV +        L + LN+
Sbjct: 60  AFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVVNVNPLYTPRELEHQLND 119

Query: 177 TEVTTVICGS---KELKKLVD-----------LSGQLDT---------VKHVICM--DAN 211
           +    ++  S     L+K+V            +  QL T         VK++  +    +
Sbjct: 120 SGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYH 179

Query: 212 IPSAVS--SVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVM 269
           +P A+S  S    GR             R   V  +  V  D+A + YT G+TG+ KG M
Sbjct: 180 LPDAISFRSALHKGR-------------RMQYVKPEL-VPEDLAFLQYTGGTTGVAKGAM 225

Query: 270 MTHGNVLATV-SAVMTIVPDL--GSKDVYLAYLPLAHVLEL 307
           +TH N+LA +  A     P L  G + V  A LPL H+  L
Sbjct: 226 LTHRNMLANLEQAKAAYGPLLHPGKELVVTA-LPLYHIFAL 265

Length = 560

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 53.1 bits (127), Expect = 3e-07
 Identities = 45/148 (30%), Positives = 63/148 (42%), Gaps = 15/148 (10%)

Query: 422 IRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSV-----GRVGA 476
           +R +  GG+   A   RFI    G    Q YGL+ET         DD S+     G VG 
Sbjct: 288 LRLVGYGGSRAIAADVRFIE-ATGVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGR 346

Query: 477 PLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNVTVGYFKNEEKTKEVYKVDDKG 533
           P P   + L    +G   T+    P    G + I  P   +GY+ N E+T EV  +D   
Sbjct: 347 PYPGVDVYLAA-TDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDG-- 402

Query: 534 MRWFYTGDVGQVHADGCLEIIDRKKDIV 561
             W  TGD+ +   DG   I  R  +++
Sbjct: 403 --WVNTGDLLERREDGFFYIKGRSSEMI 428

Length = 540

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 53.2 bits (128), Expect = 4e-07
 Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 23/172 (13%)

Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSS-VGRVGAPLP 479
           R+R++++G   L   T++      G  I +GYG+TE CA      V  ++  G VG  LP
Sbjct: 480 RLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTE-CAPVVSINVPMAAKPGTVGRILP 538

Query: 480 CSFIKLIDWP---EGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK-EVYKVDD-KGM 534
               +L+  P   +GG L            + GPN+  GY + E+    EV   ++ +G 
Sbjct: 539 GMDARLLSVPGIEQGGRLQ-----------LKGPNIMNGYLRVEKPGVLEVPTAENARGE 587

Query: 535 R---WFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEA-ALIVSP 582
               W+ TGD+ +    G ++I  R K   K+  GE VSL  VE  AL VSP
Sbjct: 588 MERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIA-GEMVSLEMVEQLALGVSP 638

Length = 718

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 52.8 bits (127), Expect = 4e-07
 Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLEL 307
           D A+I++TSGS G PKGV+ +H ++LA V  + TI  D    D +++ LPL H   L
Sbjct: 366 DAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-DFTPNDRFMSALPLFHSFGL 421

Length = 718

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 52.3 bits (126), Expect = 5e-07
 Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 37/108 (34%)

Query: 241 PVDADYPV------------------SADVAVIMYTSGSTGLPKGVMMTHGNV------- 275
           P+D  YP                     D+A ++YTSGSTG PKGV + H N        
Sbjct: 78  PLDPAYPPERLAYILEDAGARLVLTDPDDLAYVIYTSGSTGRPKGVAIEHRNAAALLQWA 137

Query: 276 --------LATVSAVMTIVPDLGSKDVYLAYLPLAHVLELV-AENLIA 314
                   LA V A  +I  DL    V+  ++PL+    +V A+N +A
Sbjct: 138 AAVFSAEELAGVLAATSICFDL---SVFEIFVPLSTGGRVVLADNALA 182

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 52.4 bits (126), Expect = 5e-07
 Identities = 59/228 (25%), Positives = 90/228 (39%), Gaps = 31/228 (13%)

Query: 445 GAPIGQGYGLTETCA---GGTFSEVDDSSVGRVGAPLPCS---FIKLIDWPEGGYLTSDS 498
           G P+   YG +E  A       +  D  SV   G   P S    ++  D P+ G L  D 
Sbjct: 319 GVPLTGLYGSSEVQALVALQPAT--DPVSVRIEGGGRPASPEARVRARD-PQDGALLPDG 375

Query: 499 PMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKK 558
               GEI I  P++  GY  N + T      D     +F TGD+G    DG      R  
Sbjct: 376 E--SGEIEIRAPSLMRGYLDNPDATARALTDDG----YFRTGDLGYTRGDGQFVYQTRMG 429

Query: 559 DIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSY--CVALVVA---SQPAVEEWA 613
           D ++L  G  V+  ++E AL   P V    +           VA V+    + P      
Sbjct: 430 DSLRLG-GFLVNPAEIEHALEALPGVAAAQVVGATRDGKTVPVAFVIPTDGASPDEAGLM 488

Query: 614 AKQGIVGKNARLDKFEIPAKIKLL-SYPWTSEAGLVTAALKIKREAIR 660
           A          L  F++PA+++++ ++P T  A       KI++  +R
Sbjct: 489 AAC-----REALAGFKVPARVQVVEAFPVTESANGA----KIQKHRLR 527

Length = 540

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 52.4 bits (126), Expect = 5e-07
 Identities = 42/219 (19%), Positives = 71/219 (32%), Gaps = 19/219 (8%)

Query: 120 ASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179
           A+ LA  G ++ +RVA++     EW V    C R   TV+ +        + + L     
Sbjct: 49  AAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRA 108

Query: 180 TTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQS--GRWKITSFADVQILG 237
             ++      K + D +  L  V           + V     +              +  
Sbjct: 109 RWLVVWPG-FKGI-DFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPGARVQLFALPD 166

Query: 238 RENPVDADYPVS-ADVAVIMY-TSGSTGLPKGVMMTHGNVLA---TVSAVMTIVPDLGSK 292
              P  A    +  D   +++ TSG+T  PK V+     +L     ++      P     
Sbjct: 167 PAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPG---- 222

Query: 293 DVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDT 331
            V LA LP   V         + +  A+  G PL     
Sbjct: 223 AVLLAALPFCGVFGF------STLLGALAGGAPLVCEPV 255

Length = 540

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 52.3 bits (126), Expect = 6e-07
 Identities = 65/289 (22%), Positives = 103/289 (35%), Gaps = 69/289 (23%)

Query: 58  STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETIC 117
            +LA+L E+S +++ D+        I         G++           +TYG+  E   
Sbjct: 23  PSLADLLEESFRQYADR-----PAFICM-------GKA-----------ITYGELDELSR 59

Query: 118 NFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI---YA---------SL 165
             A+ L   G  K  RVAI      ++ VA+    R    VV +   Y            
Sbjct: 60  ALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDS 119

Query: 166 GEEALCY----------SLNETEVTTVICGSKELKKLVDLSGQLDT--VKHVICM--DAN 211
           G EA+             L +T V  V+  S  +  L+   G +    V+ V  M    +
Sbjct: 120 GAEAIVVLENFATTVQQVLAKTAVKHVVVAS--MGDLLGFKGHIVNFVVRRVKKMVPAWS 177

Query: 212 IPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMT 271
           +P  V             F D    G             DVA + YT G+TG+ KG  + 
Sbjct: 178 LPGHVR------------FNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLL 225

Query: 272 HGNVLATV---SAVMTIVPDLGSKD---VYLAYLPLAHVLELVAENLIA 314
           H N++A V    A +    +   +     ++  LPL H+  L    L+ 
Sbjct: 226 HRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLG 274

Length = 557

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 51.7 bits (124), Expect = 9e-07
 Identities = 53/257 (20%), Positives = 92/257 (35%), Gaps = 51/257 (19%)

Query: 58  STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETIC 117
            T+ E F + C E                              LG+   L+Y Q  + + 
Sbjct: 19  KTVLESFLKLCSEMT-------------------TATVCWDEQLGK---LSYNQVRKAVI 56

Query: 118 NFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNET 177
             A+ +++     ++ + I     A  ++A           V I  S G   +    N  
Sbjct: 57  ALATKVSKY---PDQHIGIMMPASAGAYIAYFATLLSGKIPVMINWSQGLREVTACANLV 113

Query: 178 EVTTVICGSKELKKLVDLSGQ----------LDTV-KHVICMDANIPSAVSSVEQSGRWK 226
            VT V+   + ++ L    G+          ++ V K +   +        S+     W 
Sbjct: 114 GVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKELSFWEKCRIGIYMSI--PFEWL 171

Query: 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV 286
           +  F    +  ++           DVAVI++TSG+  LPKGV +TH N+LA   A +   
Sbjct: 172 MRWFG---VSDKD---------PEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFF 219

Query: 287 PDLGSKDVYLAYLPLAH 303
                 DV +++LP  H
Sbjct: 220 -SPKEDDVMMSFLPPFH 235

Length = 539

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 51.9 bits (124), Expect = 1e-06
 Identities = 41/167 (24%), Positives = 64/167 (38%), Gaps = 26/167 (15%)

Query: 107  LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
            L+Y +        A  L   G   E RVAI A+   E  VAL    +     V +  +  
Sbjct: 2029 LSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYP 2088

Query: 167  EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
             E L Y L ++    ++           L  +L     V  +          +++   W 
Sbjct: 2089 AERLAYMLEDSGAALLLTQR-------HLLERLPLPAGVARLP---------LDRDAEW- 2131

Query: 227  ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHG 273
                AD         +  +     ++A ++YTSGSTGLPKGV ++HG
Sbjct: 2132 ----ADYPDTAPAVQLAGE-----NLAYVIYTSGSTGLPKGVAVSHG 2169

Length = 5163

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 51.1 bits (123), Expect = 1e-06
 Identities = 62/259 (23%), Positives = 102/259 (39%), Gaps = 56/259 (21%)

Query: 423 RFILSGGAP----LSADTQRFINICLGAPIGQGYGLTETCAG------GTFSEVDDSSVG 472
           R IL GGAP    L  +  R + + L AP    YG+TET +         F   ++SS  
Sbjct: 233 RTILLGGAPAWPSL-LEQARQLQLRL-APT---YGMTETASQIATLKPDDFLAGNNSS-- 285

Query: 473 RVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDK 532
             G  LP + I +                 G I I   ++ +GY+     ++ +      
Sbjct: 286 --GQVLPHAQITI------------PANQTGNITIQAQSLALGYYPQILDSQGI------ 325

Query: 533 GMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMH-- 590
               F T D+G + A G L I+ R    + +  GE V   +VEAA++ +  V ++ +   
Sbjct: 326 ----FETDDLGYLDAQGYLHILGRNSQKI-ITGGENVYPAEVEAAILATGLVQDVCVLGL 380

Query: 591 ADP-FHSYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAK-IKLLSYPWTSEAGLV 648
            DP +     A+ V   P++     K  I     +L  F+ P   I +   P   +    
Sbjct: 381 PDPHWGEVVTAIYVPKDPSISLEELKTAI---KDQLSPFKQPKHWIPVPQLPRNPQG--- 434

Query: 649 TAALKIKREAIRKAFADDL 667
               KI R+ +++     L
Sbjct: 435 ----KINRQQLQQIAVQRL 449

Length = 452

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 85/357 (23%), Positives = 132/357 (36%), Gaps = 98/357 (27%)

Query: 243 DADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA----VMTIVPDLGSKDVYLAY 298
           D     + DVA+I +TSG+TGLPKG M  H ++LA   A    V+   PD    DV++  
Sbjct: 140 DKRLTAADDVALIGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQPTPD----DVFIGS 195

Query: 299 LPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVP--- 355
            PLA    L    L        G    L    T   + K  Q      R T++ + P   
Sbjct: 196 PPLAFTFGLGGLVLFP---LRFGASAVLLEQATPPLLLKAIQE----HRATILFTAPTAY 248

Query: 356 -AILDRVRD----GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLV 410
            A+L +V+      +RK V A   L  K++              W+   GL+        
Sbjct: 249 RAMLIKVKAFDISSLRKCVSAGETLPAKVWQD------------WYERTGLK-------- 288

Query: 411 FSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSS 470
                                                I  G G TE       +  +++ 
Sbjct: 289 -------------------------------------IIDGIGATEMLHIFISANEENAK 311

Query: 471 VGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGE---IVIAGPNVTVGYFKNEEKTKEVY 527
            G  G P+P    +++D  + G     + +PRGE   + + GP     Y  +E + + V 
Sbjct: 312 PGATGKPVPGYEARIVD--DQG-----NEVPRGEAGRLAVRGP-TGCRYLDDERQQEYV- 362

Query: 528 KVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
                G  W  TGD+ +   DG    + R  D++ +  G  ++  +VE AL+  P V
Sbjct: 363 ---RDG--WNVTGDIFRQDEDGYFHYVARSDDMI-VSAGYNIAAPEVEDALLTHPDV 413

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 27/147 (18%)

Query: 452 YGLTETCAGGTFSEVDDS--------SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRG 503
           YG+TET  G     + D         S+GR G    C   ++ D  +            G
Sbjct: 319 YGMTETIVG----IIGDRPGDKRRWPSIGRPGF---CYEAEIRD--DHN--RPLPAGEIG 367

Query: 504 EIVIAG-PNVTV--GYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDI 560
           EI I G P  T+   Y+ + + T +V + D     W +TGD G V  +G    +DR+ ++
Sbjct: 368 EICIKGVPGKTIFKEYYLDPKATAKVLEADG----WLHTGDTGYVDEEGFFYFVDRRCNM 423

Query: 561 VKLQHGEYVSLGKVEAALIVSPYVDNI 587
           +K + GE VS  ++E  +   P + +I
Sbjct: 424 IK-RGGENVSCVELENIIATHPKIQDI 449

Length = 517

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 64/261 (24%), Positives = 116/261 (44%), Gaps = 38/261 (14%)

Query: 422 IRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSS---VGRVGAPL 478
           +R +  GGA LSA   R +   LG  + Q +G+ E      ++ +DD     +   G PL
Sbjct: 307 LRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLV--NYTRLDDPPEIIIHTQGRPL 364

Query: 479 -PCSFIKLIDWPEGGYLTSDSPMPRGEI---VIAGPNVTVGYFKNEEKTKEVYKVDDKGM 534
            P   ++++D          +P+  GE+   +  GP    GY++  E     +  D    
Sbjct: 365 SPDDEVRVVD-------ADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADG--- 414

Query: 535 RWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPF 594
            ++ +GD+ +   DG L +  R KD +  + GE ++  +VE  L+  P V +  + A P 
Sbjct: 415 -FYRSGDLVRRDPDGYLVVEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVHDAALVAMP- 471

Query: 595 HSY-----CVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLL-SYPWTSEAGLV 648
                   C A +V  +P +     ++ +  +   L  F++P +I+ + S P       +
Sbjct: 472 DELLGEKSC-AFIVVKEPPLRAAQLRRFL--RERGLAAFKLPDRIEFVDSLP-------L 521

Query: 649 TAALKIKREAIRKAFADDLAR 669
           TA  KI ++A+R+  A  L  
Sbjct: 522 TAVGKIDKKALRRRLASRLLA 542

Length = 542

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 50.3 bits (121), Expect = 3e-06
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 226 KITSFADVQ-ILGRENPVDADYPVSA-DVAVIMYTSGSTGLPKGVMMTHGNVL 276
            + +  +++ I    NP D D+ V   D   I++TSG+TG PKGV ++H N++
Sbjct: 117 PVITLDELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLV 169

Length = 503

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 45/192 (23%), Positives = 66/192 (34%), Gaps = 62/192 (32%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
            +Y +  E    FA+ LA LG  K ERV        E +VA  G  +       ++++ G
Sbjct: 1   YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFG 60

Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
            E +   L   E   +I  + EL +                                   
Sbjct: 61  PEPIRDRLELGEAKVLIT-TPELYE----------------------------------- 84

Query: 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNV---LATVSAVM 283
                           D + P     A++ +TSG+TG PKGV+  H  V    AT   V+
Sbjct: 85  --------------RTDPEDP-----ALLHFTSGTTGKPKGVLHVHRAVVAHYATARYVL 125

Query: 284 TIVPDLGSKDVY 295
            + PD    DVY
Sbjct: 126 DLRPD----DVY 133

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 49.8 bits (119), Expect = 3e-06
 Identities = 50/173 (28%), Positives = 73/173 (42%), Gaps = 23/173 (13%)

Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTET---CAGGTFSEVDDSSVGRVGAP 477
            +R  ++GG PL+ +         G  + +GYG TET   CA     ++   S+G+    
Sbjct: 292 SLRHCVTGGEPLNPEVLEQWKAQTGLDLYEGYGQTETGLICANFKGMKIKPGSMGK---A 348

Query: 478 LPCSFIKLIDWPEGGYLTSDSPMPRGEIVI-AGPNVTVGYFK----NEEKTKEVYKVDDK 532
            P   +++ID   G  L    P   G+I I   P      F     N EKT    + D  
Sbjct: 349 SPPYDVQIID-DNGNVL---PPGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGD-- 402

Query: 533 GMRWFY-TGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
               FY TGD G +  DG    + R  D++    G  +   +VE+ALI  P V
Sbjct: 403 ----FYITGDRGIMDEDGYFWFVGRADDVI-NSSGYRIGPFEVESALIEHPAV 450

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 50.0 bits (120), Expect = 3e-06
 Identities = 23/53 (43%), Positives = 32/53 (60%)

Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAH 303
           D+A++  TSGSTG PK V +THGN+ A   A+          DV +++LPL H
Sbjct: 153 DLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFH 205

Length = 545

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 49.2 bits (118), Expect = 4e-06
 Identities = 21/80 (26%), Positives = 37/80 (46%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           +TY +  E +   A  L + G +K +RVA++     ++ +A     R    VV +     
Sbjct: 2   ITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNR 61

Query: 167 EEALCYSLNETEVTTVICGS 186
           E  L + LN++    +I GS
Sbjct: 62  EAELEHILNDSGARVLIVGS 81

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 49.6 bits (119), Expect = 5e-06
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 9/80 (11%)

Query: 236 LGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT-------IVPD 288
           L      DA        A + YTSGST  P GVM++H NV+A    +M+        VP 
Sbjct: 146 LDSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPP 205

Query: 289 LGSKDVYLAYLPLAHVLELV 308
             +  V  ++LP  H + LV
Sbjct: 206 PDTTVV--SWLPFYHDMGLV 223

Length = 578

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 48.5 bits (116), Expect = 9e-06
 Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 23/192 (11%)

Query: 120 ASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179
           A  L  LG K  +RVA+ A+T  ++  A   C          YA L    L   +     
Sbjct: 63  ARRLLALGLKPGDRVALIAETDGDFVEAFFAC---------QYAGLVPVPLPLPMG---- 109

Query: 180 TTVICGSKELKKLVDLSGQLDTVKH--VICMDANIPSAVSSVE-QSGRWKITSFADVQIL 236
                G +E   +  L G L + +   +I  D  +P    +         ++        
Sbjct: 110 ----FGGRE-SYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNPLLHVLS--HAWFKA 162

Query: 237 GRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL 296
             E  V    P   D+A + Y+SGST  P+GV++TH  ++A + A+      +   D  +
Sbjct: 163 LPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCV 222

Query: 297 AYLPLAHVLELV 308
           ++LP  H + LV
Sbjct: 223 SWLPFYHDMGLV 234

Length = 579

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 47.6 bits (114), Expect = 1e-05
 Identities = 49/187 (26%), Positives = 75/187 (40%), Gaps = 44/187 (23%)

Query: 413 KVRAILGGRIRFILSGGAPLSAD--TQRFINICLGAP-IGQGYGLTETCAGGTFSEVD-- 467
            +R I+G  +R       P   D   +RF     G P I + YG TE      F  +   
Sbjct: 197 PLRKIIGNGLR-------PDIWDEFKERF-----GVPRIVEFYGSTE--GNVGFINLFNK 242

Query: 468 DSSVGRVGAPLPCSFIKLIDW----------PEGGYLTSDSPMPRGEI-----VIAGPNV 512
             +VGR+    P + I ++ +            G  +     +P GE+      I   N 
Sbjct: 243 PGAVGRL----PPAAIAVVKYDVETEEPIRDANGFCI----KVPPGEVGLLLGEITDRNP 294

Query: 513 TVGYFKNEEKTKEVYK-VDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSL 571
             GY  +E   K++ + V  KG  +F TGD+ +    G    +DR  D  + + GE VS 
Sbjct: 295 FDGYTDDEATEKKILRDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWK-GENVST 353

Query: 572 GKVEAAL 578
            +VE  L
Sbjct: 354 TEVEEVL 360

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 48/220 (21%), Positives = 76/220 (34%), Gaps = 55/220 (25%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
            T+ +  E     A+     G++  + VA+F + R E+     G  +  V    I ++L 
Sbjct: 4   WTFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINSNLR 63

Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
            E+L + +  ++   +I          +L   L T           PS            
Sbjct: 64  LESLLHCITVSKAKALI---------FNLLDPLLTQSSTE-----PPSQD---------- 99

Query: 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVL---ATVSAVM 283
                          V+       D    +YTSG+TGLPK  ++ H       A      
Sbjct: 100 --------------DVNFR-----DKLFYIYTSGTTGLPKAAVIVHSRYYRIAAGAYYAF 140

Query: 284 TIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYG 323
            + P+    DV    LPL H     A   I GVG A+ +G
Sbjct: 141 GMRPE----DVVYDCLPLYH----SAGG-IMGVGQALLHG 171

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 47/210 (22%), Positives = 75/210 (35%), Gaps = 14/210 (6%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
            TY +    +   A+ L  LG    + VA       E   AL G          I   L 
Sbjct: 59  WTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGG-EAAGIANPINPLLE 117

Query: 167 EEALCYSLNETEVTTVICGSKELK-----KLVDLSGQLDTVKHVICMDAN------IPSA 215
            E +   L       ++            K+ ++   L  ++ V+ +D           A
Sbjct: 118 PEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLA 177

Query: 216 VSSVEQSGRWKITSFADVQILGRENPVDADYPVSA-DVAVIMYTSGSTGLPKGVMMTHGN 274
           V  + +    +I  F         + + +  P+   DVA   +T G+TG+PK    THGN
Sbjct: 178 VPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGN 237

Query: 275 VLATVSAVMTIVPDLGSKDVYLAYLPLAHV 304
            +A    +  ++  LG  D     LPL HV
Sbjct: 238 EVANA-WLGALLLGLGPGDTVFCGLPLFHV 266

Length = 632

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 50/215 (23%), Positives = 83/215 (38%), Gaps = 72/215 (33%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           LTY Q +E +C F+  L  L   K + V I+     E  +A+  C R   T   ++    
Sbjct: 93  LTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYS 152

Query: 167 EEAL----------------CYSLNETEVTTVICGSKELKKLVDLSGQLDTVK--HVICM 208
            ++L                   LN+  +T     +  LK+ ++LS    T K  +VI +
Sbjct: 153 VKSLIDRIETITPKLIITTNYGILNDEIITF----TPNLKEAIELS----TFKPSNVITL 204

Query: 209 DANIPSAVSSVEQSGRWKITSFADVQILG------------------REN---------P 241
             N               ITS +D++ +                   +EN         P
Sbjct: 205 FRN--------------DITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVP 250

Query: 242 VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVL 276
           V++ +P+      I+YTSG+TG  K V+ ++G  L
Sbjct: 251 VESSHPLY-----ILYTSGTTGNSKAVVRSNGPHL 280

Length = 647

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 46.5 bits (111), Expect = 4e-05
 Identities = 47/216 (21%), Positives = 80/216 (37%), Gaps = 16/216 (7%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFA-DTRAEWFV-ALQGCFRRNVTVVTIYAS 164
           LTY +  E     A GL  LG +  + VA+ A + R   FV AL    +    ++ +   
Sbjct: 75  LTYAELDEQSNALARGLLALGVRAGDGVAVLARNHR--GFVLALYAAGKVGARIILLNTG 132

Query: 165 LGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGR 224
                L        V  ++   +    L  L   L  ++       +   + S+ E    
Sbjct: 133 FSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGSTDE---- 188

Query: 225 WKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT 284
               +  D+       P+    P      VI+ TSG+TG PKG      + LA ++ +++
Sbjct: 189 ----TLDDLIAGSSTAPLPK--PPKPGGIVIL-TSGTTGTPKGAPRPEPSPLAPLAGLLS 241

Query: 285 IVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAI 320
            VP   + +  L   P+ H        L   +GS +
Sbjct: 242 RVP-FRAGETTLLPAPMFHATGWAHLTLAMALGSTV 276

Length = 549

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 45.7 bits (109), Expect = 5e-05
 Identities = 21/78 (26%), Positives = 34/78 (43%)

Query: 106 WLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASL 165
            LTYG+        A  L  LG    +RVA+ A   AE+ V     +R     V +  S 
Sbjct: 11  SLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSY 70

Query: 166 GEEALCYSLNETEVTTVI 183
               L Y L++++ + ++
Sbjct: 71  PAAELAYILSDSQPSLLV 88

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 253 AVIMYTSGSTGLPKGVMMTH-GNVLATVSAVMTIVPDLGSKDVYLAYLPLAH 303
           A + YTSG+TG PKGV+ +H  NVL  + A         + D  L  +PL H
Sbjct: 180 AGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFH 231

Length = 542

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 46.1 bits (110), Expect = 5e-05
 Identities = 40/174 (22%), Positives = 66/174 (37%), Gaps = 45/174 (25%)

Query: 422 IRFILSGGAPLS-ADTQRFINICLGAPIGQG-------YGLTETCAGGTFSEVDD----- 468
           +RF L+G  P+  AD +  ++   GA  G         YG+ E     +FS         
Sbjct: 278 LRFALNGAEPIDPADVEDLLDA--GARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVD 335

Query: 469 ---------------------SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVI 507
                                  +  +G PLP   ++++D  E G +     +  G I +
Sbjct: 336 EVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD--EDGQVLPPRGV--GVIEL 391

Query: 508 AGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
            G +VT GY         +   D  G  W  TGD+G +  +G + +  R KD++
Sbjct: 392 RGESVTPGYL---TMDGFIPAQDADG--WLDTGDLGYLTEEGEVVVCGRVKDVI 440

Length = 545

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 45.8 bits (108), Expect = 5e-05
 Identities = 114/568 (20%), Positives = 203/568 (35%), Gaps = 108/568 (19%)

Query: 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYAS 164
           E ++Y Q  +     A  L   G +  + VA+ +D   E  V L    R  + +      
Sbjct: 23  EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYIT----- 77

Query: 165 LGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGR 224
               A+ + L   E   ++  S    +++  S  LD +   +  D  +  +         
Sbjct: 78  ----AINHHLTAPEADYIVGDSG--ARVLVASAALDGLAAKVGADLPLRLSFGG------ 125

Query: 225 WKITSFADVQ-ILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVM--MTHGNVLATVSA 281
            +I  F   +  L    P   + P  A   V++Y+SG+TG PKG+   +   +V A    
Sbjct: 126 -EIDGFGSFEAALAGAGPRLTEQPCGA---VMLYSSGTTGFPKGIQPDLPGRDVDAPGDP 181

Query: 282 VMTIVP---DLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKG 338
           ++ I     D+   D+Y +  P+ H   L   +++  +G  +          T   +++ 
Sbjct: 182 IVAIARAFYDISESDIYYSSAPIYHAAPLRWCSMVHALGGTVVLAKRFDAQATLGHVER- 240

Query: 339 TQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGA 398
                   R TV   VP +  R+      K+DA     +  +D++               
Sbjct: 241 -------YRITVTQMVPTMFVRLL-----KLDAD---VRTRYDVS--------------- 270

Query: 399 WGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETC 458
                                  +R ++   AP   D +  +   LG  + + Y  TE  
Sbjct: 271 ----------------------SLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEA- 307

Query: 459 AGGTFSEVDD-----SSVGR--VGAPLPCSFIKLIDWPEGGYLTSDSPMPR-GEIVIAGP 510
            G TF +  D      SVGR  +G    C         + G    + P  R G +     
Sbjct: 308 HGMTFIDSPDWLAHPGSVGRSVLGDLHICD--------DDGN---ELPAGRIGTVYFERD 356

Query: 511 NVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVS 570
            +   Y  + EKT            W   GD+G V  DG L + DRK  ++ +  G  + 
Sbjct: 357 RLPFRYLNDPEKTAAAQHPAHP--FWTTVGDLGSVDEDGYLYLADRKSFMI-ISGGVNIY 413

Query: 571 LGKVEAALIVSPYVDNIMMHA--DPFHSYCVALVVASQPAVE--EWAAKQGIVGKNARLD 626
             + E AL + P V ++ +    DP     V  V+     +   +  A++ I    +R+ 
Sbjct: 414 PQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDELARELIDYTRSRIA 473

Query: 627 KFEIPAKIKLL-SYPWTSEAGLVTAALK 653
            ++ P  ++ +   P T    LV   L+
Sbjct: 474 HYKAPRSVEFVDELPRTPTGKLVKGLLR 501

Length = 501

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 45.8 bits (109), Expect = 6e-05
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 16/92 (17%)

Query: 473 RVGAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNVTVGYFKNEEKTKEVYKV 529
             G  LP   I++ +  E G      P+P    G I + GP++  GYF++EE    V   
Sbjct: 386 NCGKALPGHEIEIRN--EAG-----MPLPERVVGHICVRGPSLMSGYFRDEESQD-VLAA 437

Query: 530 DDKGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
           D     W  TGD+G +  DG L I  R KD++
Sbjct: 438 DG----WLDTGDLGYL-LDGYLYITGRAKDLI 464

Length = 579

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 45.9 bits (109), Expect = 6e-05
 Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 24/174 (13%)

Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGT-FSEVDDSSVGRVGAPLP 479
            ++ I  GG  +      +I   L     +GYG TE   G T        ++      +P
Sbjct: 381 NLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEI--GITYLYCYGHINIPYNATGVP 438

Query: 480 CSFIK-LIDWPEGGYLTSDS--------PMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVD 530
             FIK  I   +G  L  +         PMP        P+    ++KN+EK K+++   
Sbjct: 439 SIFIKPSILSEDGKELNVNEIGEVAFKLPMP--------PSFATTFYKNDEKFKQLF--- 487

Query: 531 DKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
            K   ++ +GD+G    +G   I+ R  D +K+  G  V L  +E +++  P V
Sbjct: 488 SKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKIS-GNKVQLNTIETSILKHPLV 540

Length = 647

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 45.5 bits (108), Expect = 7e-05
 Identities = 60/252 (23%), Positives = 95/252 (37%), Gaps = 37/252 (14%)

Query: 59  TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
            ++ L   + +  GD       +++SR  E             G+    TY         
Sbjct: 11  LISSLIAHAARHAGDT------EIVSRRVE-------------GDIHRYTYRDCERRAKQ 51

Query: 119 FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETE 178
            A  LA LG +  +RV   A        A  G         TI   L  E + Y +N  E
Sbjct: 52  LAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRLFPEQIAYIVNHAE 111

Query: 179 VTTVICGSKELKKLVD-LSGQLDTVKHVICM--DANIPSAVSSVEQSGRWKITSFADVQI 235
               +        LVD L+ Q   VK  + M   A++P+   S        +  +    +
Sbjct: 112 -DRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLPA--GSTP------LLCYET--L 160

Query: 236 LGRENPVDADYPV--SADVAVIMYTSGSTGLPKGVMMTH-GNVLATVSAVMTIVPDLGSK 292
           +G ++  D D+P       + + YTSG+TG PKG + +H   VL    A +     L ++
Sbjct: 161 VGAQDG-DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSAR 219

Query: 293 DVYLAYLPLAHV 304
           D  L  +P+ HV
Sbjct: 220 DAVLPVVPMFHV 231

Length = 539

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 45.7 bits (108), Expect = 9e-05
 Identities = 45/177 (25%), Positives = 68/177 (38%), Gaps = 26/177 (14%)

Query: 99  LHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTV 158
           L  GE E L Y +        A  L + G   +  V +  +   E  VAL    +     
Sbjct: 530 LAFGE-ETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAY 588

Query: 159 VTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSS 218
           V +      E L Y L ++ V  ++  S   +KL  L+  +     V+ +D   P+A   
Sbjct: 589 VPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKL-PLAAGVQ----VLDLDR--PAA--- 638

Query: 219 VEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNV 275
               G  +            ENP     P   ++A ++YTSGSTG PKG    H  +
Sbjct: 639 -WLEGYSE------------ENPGTELNP--ENLAYVIYTSGSTGKPKGAGNRHRAL 680

Length = 5163

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 51/204 (25%), Positives = 73/204 (35%), Gaps = 27/204 (13%)

Query: 99   LHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTV 158
            L  GE E LTYG+        A  L  LG   E  V I  +   E  V L    +     
Sbjct: 1593 LVFGEQE-LTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAY 1651

Query: 159  VTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSS 218
            V +      E L Y + ++ +  ++  S    +L    G                S V  
Sbjct: 1652 VPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLPDGL--------------RSLV-- 1695

Query: 219  VEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAT 278
            ++Q   W              NP     P   ++A ++YTSGSTG PKG    HG ++  
Sbjct: 1696 LDQEDDWLEGY-------SDSNPAVNLAP--QNLAYVIYTSGSTGRPKGAGNRHGALVNR 1746

Query: 279  VSAVMTIVPDLGSKDVYLAYLPLA 302
            + A       L + DV L +   A
Sbjct: 1747 LCA-TQEAYQLSAADVVLQFTSFA 1769

Length = 3956

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 503  GEIVIAGPNVTVGYFKNEEKTKEVYKVD---DKGMRWFYTGDVGQVHADGCLEIIDRKKD 559
            GE+ + G  +  GY      T E +  D     G R + TGD+ +  ADG +E + R   
Sbjct: 2346 GELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDH 2405

Query: 560  IVKLQHGEYVSLGKVEAALIVSPYVDN--IMMHADPFHSYCVALVVASQPAVEEWAAKQG 617
             VK++ G  + LG++EA L   P V    ++          VA VV    A +  A  + 
Sbjct: 2406 QVKIR-GFRIELGEIEARLQAHPAVREAVVVAQDGASGKQLVAYVVPDDAAEDLLAELRA 2464

Query: 618  IVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLYE 672
             +   ARL  + +PA   +L      E   +    K+ R+A+ K     L + Y 
Sbjct: 2465 WLA--ARLPAYMVPAHWVVL------ERLPLNPNGKLDRKALPKPDVSQLRQAYV 2511

Length = 5163

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 44.9 bits (107), Expect = 1e-04
 Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 24/148 (16%)

Query: 422 IRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDD-----SSVGRVGA 476
           +R  +   AP   + +R +    G  I + Y  +E   G T    +D      SVG+   
Sbjct: 264 LRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGG-GVTVITSEDWLAHPGSVGKAVL 322

Query: 477 PLPCSFIKLIDWPEGGYLTSDSPMPRGE---IVIAGPNVTVGYFKNEEKTKEVYKVDDKG 533
                 ++++D  E G     + +P GE   +          Y  + EKT      +  G
Sbjct: 323 ----GEVRILD--EDG-----NELPPGEIGTVYFEMDGYPFEYHNDPEKTAAAR--NPHG 369

Query: 534 MRWFYTGDVGQVHADGCLEIIDRKKDIV 561
             W   GDVG +  DG L + DRK D++
Sbjct: 370 --WVTVGDVGYLDEDGYLYLTDRKSDMI 395

Length = 502

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 17/77 (22%), Positives = 31/77 (40%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           LTY +  +    FA+ L  LG    +RV +      E   A   C +     V +   L 
Sbjct: 11  LTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLT 70

Query: 167 EEALCYSLNETEVTTVI 183
            + L + L+++    ++
Sbjct: 71  PQDLEHILDDSGAALLV 87

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 44.3 bits (104), Expect = 2e-04
 Identities = 67/313 (21%), Positives = 112/313 (35%), Gaps = 93/313 (29%)

Query: 244 ADY-PVSADV-AVIMYTSGSTGLPKGVMMTHGNVLATVSAV----MTIVP-DLG--SKDV 294
             Y P+  D  A   YTSG+TG PK  +  H + L  V A+    + + P D G  S  +
Sbjct: 137 GGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARM 196

Query: 295 YLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASV---LRPTVM 351
           Y AY                G+G+++ +      +   +      +  A +     P+V+
Sbjct: 197 YFAY----------------GLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVL 240

Query: 352 ASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVF 411
             VP    RV       +D+    S                                  F
Sbjct: 241 YGVPNFFARV-------IDSCSPDS----------------------------------F 259

Query: 412 SKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTF--SEVDDS 469
             +R +       + +G A      +R +    G PI  G G TE   G TF  + VD+ 
Sbjct: 260 RSLRCV-------VSAGEALELGLAERLMEFFGGIPILDGIGSTEV--GQTFVSNRVDEW 310

Query: 470 SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEE-------- 521
            +G +G  LP   I+++  P+G    +  P   G++ + GP +  GY+   +        
Sbjct: 311 RLGTLGRVLPPYEIRVVA-PDGT---TAGPGVEGDLWVRGPAIAKGYWNRPDSPVANEGW 366

Query: 522 -KTKEVYKVDDKG 533
             T++   +D  G
Sbjct: 367 LDTRDRVCIDSDG 379

Length = 705

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 16/107 (14%)

Query: 231 ADVQILGRENPVDADYPVSA---------DVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281
             V  L  +    +D PV A           A+ +YTSG+TGLPK   ++H  VL    +
Sbjct: 114 EGVISLLAKVDAASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHLRVLQ--CS 171

Query: 282 VMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTL 328
            M  +  + + DV    LPL H         + G+   IG G  L L
Sbjct: 172 GMLSLCGVTADDVVYTTLPLYHS-----SGALLGIVGCIGLGATLVL 213

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 43.7 bits (104), Expect = 2e-04
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 7/55 (12%)

Query: 253 AVIMYTSGSTGLPKGVMMTHGNVLAT---VSAVMTIVPDLGSKDVYLAYLPLAHV 304
           A +  TSGSTGLPK  + T    LA+   V ++M       ++D +L  LPL HV
Sbjct: 138 ATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLM----PFTAQDSWLLSLPLFHV 188

Length = 458

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 43.7 bits (103), Expect = 3e-04
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 231 ADVQILGREN-PVDADYPVS-ADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPD 288
           AD + L +    +     V+  D+  +MYTSG+T  PKGVM ++GN+    S    I   
Sbjct: 128 ADSRRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNL-HWKSIDHVIALG 186

Query: 289 LGSKDVYLAYLPLAHV 304
           L + +  L   PL HV
Sbjct: 187 LTASERLLVVGPLYHV 202

Length = 497

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 48/206 (23%), Positives = 82/206 (39%), Gaps = 26/206 (12%)

Query: 108 TYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWF-----VALQGCFRRNVTVVTIY 162
           T+ + +      AS LA+ G  + + VA+              V + G       + T+ 
Sbjct: 45  TWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGA-----VLNTLN 99

Query: 163 ASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQS 222
             L   ++ + L   E   +I  + E  ++   +  L      + +D + P      E  
Sbjct: 100 TRLDAASIAFMLRHGEAKVLIVDT-EFAEVAREALALLPGPKPLVIDVDDP------EYP 152

Query: 223 GRWKITSFADVQILGRENPVDADYPVSAD----VAVIMYTSGSTGLPKGVMMTH-GNVLA 277
           G   I +      L   +P D  + + AD    +A + YTSG+TG PKGV+  H G  L 
Sbjct: 153 GGRFIGALDYEAFLASGDP-DFAWTLPADEWDAIA-LNYTSGTTGNPKGVVYHHRGAYLN 210

Query: 278 TVSAVMTIVPDLGSKDVYLAYLPLAH 303
            +S ++     +    VYL  LP+ H
Sbjct: 211 ALSNILAW--GMPKHPVYLWTLPMFH 234

Length = 545

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 16/87 (18%)

Query: 196 SGQLDTVKHVICMDANIPSAV-SSVEQSGRWKITSFADVQILG----RENPVDADYPVSA 250
           +G  D    ++  DA  PS + ++ +Q  R     FADV  L                  
Sbjct: 540 TGYPDDRLKMMLEDAR-PSLLITTADQLPR-----FADVPDLTSLCYNAPLAPQGAAPLQ 593

Query: 251 -----DVAVIMYTSGSTGLPKGVMMTH 272
                  A I++TSGSTG PKGVM+  
Sbjct: 594 LSQPHHTAYIIFTSGSTGRPKGVMVGQ 620

Length = 1296

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 43.6 bits (103), Expect = 4e-04
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 503 GEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
           GEI  +GP++  GY++N E + + + V+  G  W  TGD+G +  DG L +  R KD++
Sbjct: 398 GEIWASGPSIAHGYWRNPEASAKTF-VEHDGRTWLRTGDLGFLR-DGELFVTGRLKDML 454

Length = 4334

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 43.5 bits (103), Expect = 4e-04
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 16/157 (10%)

Query: 445 GAPIGQGYGLTETCAGGTF--SEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSD--SPM 500
           GAP+   YG TE     ++  +  ++ +  R G+ +P   I    W  G  +      P+
Sbjct: 742 GAPLHNLYGPTEAAVDVSWYPAFGEELAAVR-GSSVP---IGYPVWNTGLRILDARMRPV 797

Query: 501 P---RGEIVIAGPNVTVGYFKNEEKTKEVYKVDD---KGMRWFYTGDVGQVHADGCLEII 554
           P    G++ + G  +  GY    + T   + + D    G R + TGDV +   DG +E +
Sbjct: 798 PPGVAGDLYLTGIQLAQGYLGRPDLTASRF-IADPFAPGERMYRTGDVARWLDDGAVEYL 856

Query: 555 DRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHA 591
            R  D +K++ G+ + LG+++ A+   P V+  + HA
Sbjct: 857 GRSDDQLKIR-GQRIELGEIDRAMQALPDVEQAVTHA 892

Length = 1296

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 43.1 bits (102), Expect = 4e-04
 Identities = 59/256 (23%), Positives = 116/256 (45%), Gaps = 43/256 (16%)

Query: 428 GGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRV----GAPL-PCSF 482
           GGA LS    R I   LG  + Q +G+ E     T   +DDS   R+    G P+ P   
Sbjct: 308 GGARLSETLARRIPAELGCQLQQVFGMAEGLVNYT--RLDDSDE-RIFTTQGRPMSPDDE 364

Query: 483 IKLIDWPEGGYLTSDSPMPRGEI---VIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYT 539
           + + D    G     +P+P+GE+   +  GP    GY+K+ +     +  D  G  ++ +
Sbjct: 365 VWVAD--ADG-----NPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAF--DANG--FYCS 413

Query: 540 GDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADP---FHS 596
           GD+  +  DG + ++ R+KD +  + GE ++  ++E  L+  P V +  + +        
Sbjct: 414 GDLVSIDPDGYITVVGREKDQIN-RGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGE 472

Query: 597 YCVALVVASQP----AVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAAL 652
              A +V  +P     +  +  +QGI        +F++P +++ +      ++  +TA  
Sbjct: 473 KSCAFLVVKEPLKAVQLRRFLREQGIA-------EFKLPDRVECV------DSLPLTAVG 519

Query: 653 KIKREAIRKAFADDLA 668
           K+ ++ +R+  A   +
Sbjct: 520 KVDKKQLRQWLASRAS 535

Length = 536

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 13/24 (54%), Positives = 18/24 (75%)

Query: 249 SADVAVIMYTSGSTGLPKGVMMTH 272
           S D A+++YTSG+TG PKG +  H
Sbjct: 87  SDDPAILIYTSGTTGPPKGALHGH 110

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 42.9 bits (102), Expect = 5e-04
 Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 31/110 (28%)

Query: 451 GYGLTET----CAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIV 506
           GYGLTE     CA       D  +   VG+PLP   +KL+D               GEI 
Sbjct: 270 GYGLTEMASTVCA----KRADGLA--GVGSPLPGREVKLVD---------------GEIW 308

Query: 507 IAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDR 556
           + G ++ +GY++     + V  V+D+G  WF T D G+   +G L I+ R
Sbjct: 309 LRGASLALGYWRQ---GQLVPLVNDEG--WFATRDRGEWQ-NGELTILGR 352

Length = 458

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 42.8 bits (101), Expect = 6e-04
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 6/114 (5%)

Query: 503  GEIVIAGPNVTVGYFKNEEKTKEVY---KVDDKGMRWFYTGDVGQVHADGCLEIIDRKKD 559
            GE+ +AG  V  GY  +  +T   +        G R + TGD+ +  +DG LE + R   
Sbjct: 4067 GELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDH 4126

Query: 560  IVKLQHGEYVSLGKVEAALIVSPYVDN--IMMHADPFHSYCVALVVASQPAVEE 611
             VK++ G  + LG++EA L     V    + +       + V  +V  Q  + +
Sbjct: 4127 QVKIR-GYRIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGYLVPHQTVLAQ 4179

Length = 4334

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 42.2 bits (99), Expect = 7e-04
 Identities = 48/212 (22%), Positives = 77/212 (36%), Gaps = 45/212 (21%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           LTY +    +   A+ L   G + ++RVA+ A    +  +AL    R       +   L 
Sbjct: 29  LTYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAVPALMNPRLK 88

Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
              +   +   E+T                        VI +DA +  A+          
Sbjct: 89  PAEIAELIKRGEMTAA----------------------VIAVDAQVMDAI---------- 116

Query: 227 ITSFADVQILGRENPVDADYPVSA------------DVAVIMYTSGSTGLPKGVMMTHGN 274
             S + V++L   + V    P SA              A + YTSG+TGLPKG ++    
Sbjct: 117 FQSGSGVRVLALGDLVGLGEPESAGPPIEDPPREPEQPAFVFYTSGTTGLPKGAVIPQRA 176

Query: 275 VLATVSAVMTIVP-DLGSKDVYLAYLPLAHVL 305
             + V  + T      G  +V L  +PL HV+
Sbjct: 177 AESRVLFMSTQAGLRHGRHNVVLGLMPLYHVI 208

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 41.8 bits (99), Expect = 0.001
 Identities = 49/171 (28%), Positives = 74/171 (43%), Gaps = 23/171 (13%)

Query: 422 IRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTF------SEVDDSSVGRVG 475
           +R ILS G PL+ +  R+     G PI   + +TET  GG         ++   S+G+  
Sbjct: 325 LRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTET--GGIMIANYPAMDIKPGSMGK-- 380

Query: 476 APLPCSFIKLIDWPEGGYLTSDSPMPRGEIVI-AG-PNVTVGYFKNEEKTKEVYKVDDKG 533
            PLP     ++D           P   G + I  G P++  G + N EK +  Y   D  
Sbjct: 381 -PLPGIEAAIVDDQGNE----LPPNRMGNLAIKKGWPSMMRGIWNNPEKYES-YFAGD-- 432

Query: 534 MRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
             W+ +GD   +  DG      R  D++K   GE V   +VE+ L+  P V
Sbjct: 433 --WYVSGDSAYMDEDGYFWFQGRVDDVIK-TSGERVGPFEVESKLMEHPAV 480

Length = 570

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 40/160 (25%), Positives = 57/160 (35%), Gaps = 39/160 (24%)

Query: 440 INICLGAPIGQGYGLTET--------------CAGGTFSEVDDSSVGRVGAPLPCSFIKL 485
           +N  L       YG TE                  G FSEV    +G             
Sbjct: 289 VNQHLPGEKVNIYGTTEAMNSLYMRDPRTGTEMRPGFFSEVRIVRIG------------- 335

Query: 486 IDWPEGGYLTSDSPMPRGEIVIAGPNVT-VGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQ 544
                G    +      GE+V+A  + T  GY    + T E  K+ D    W+ T DV  
Sbjct: 336 -----GSPDEALPNGEEGELVVAAADATFTGYLNQPQATAE--KLQD---GWYRTSDVAV 385

Query: 545 VHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
           V   G + I+ R  D++ +  GE +   +VE  L  +P V
Sbjct: 386 VDPSGTVRILGRVDDMI-ISGGENIHPSEVERVLGRAPGV 424

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 6/88 (6%)

Query: 246 YPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVL 305
            P S   AV+  T+GSTG P+  +++ G VL+ +  +   V    + DV  ++LPL H +
Sbjct: 148 PPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDM 207

Query: 306 ELVAENLIAGVGSAIGYGTPLTLTDTSS 333
                 L   + +A+  G PL L  T++
Sbjct: 208 -----GLAFLLTAALA-GAPLWLAPTTA 229

Length = 525

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 41.4 bits (98), Expect = 0.001
 Identities = 45/214 (21%), Positives = 84/214 (39%), Gaps = 28/214 (13%)

Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
           GE   +++ +    +   A+ L  LG K  +RVA +     E  +A+        ++  I
Sbjct: 82  GERREISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLAT----ASIGAI 137

Query: 162 YAS----LGEEALCYSLNETEVTTVIC------GSKE---LKKLVDLSGQLDTVKHVICM 208
           ++S     G EA+     + E   +          KE    +K+ ++   L +++ V+ +
Sbjct: 138 WSSCSPDFGVEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPSLEAVVVV 197

Query: 209 D---ANIPSAVSSVEQSGRWKITSFADVQILGREN-PVDADYPVSADVAVIMYTSGSTGL 264
               ++   A      S    + S A  +    E   +  D+P+      I+Y+SG+TGL
Sbjct: 198 PYLSSDAQPAALKF--SALTLLWSLAGDRAAPLEFERLPFDHPL-----WILYSSGTTGL 250

Query: 265 PKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAY 298
           PK ++   G  L        +  DL   D    Y
Sbjct: 251 PKCIVHGAGGTLLQHLKEHGLHCDLRPGDRLFYY 284

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 1/97 (1%)

Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
           G  E  T+GQ  +     A+ L +LG ++ +RV ++     E  +A    ++     V +
Sbjct: 2   GTREEYTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPL 61

Query: 162 YASLGEEALCYSLNETEVTTVIC-GSKELKKLVDLSG 197
               G +A+ + L ++    ++  GS +   L+  SG
Sbjct: 62  SVLFGPDAVEHRLRDSGARVLVTDGSDDPAILIYTSG 98

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 18/205 (8%)

Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVT-VVT 160
           G  +W +Y +  +   N A+GL +LG K+ +   +     AE+++      +  V  V+ 
Sbjct: 45  GNRQW-SYRELDQRADNLAAGLTKLGIKQGDTAVVQLPNIAEFYIVFFALLKLGVAPVLA 103

Query: 161 IYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDA--NIPSAVSS 218
           +++    E   Y+        +I  +  L    D + QL        +    NI  A  +
Sbjct: 104 LFSHRKSELTAYASQIEPALYIIDRAHSLFDYDDFARQL-----QSKLPTLRNIIVAGQT 158

Query: 219 VEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAT 278
            E      + S A+        PV      S +VA    + GSTG PK +  TH +   +
Sbjct: 159 GEAELFLWLESPAE--------PVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYS 210

Query: 279 VSAVMTIVPDLGSKDVYLAYLPLAH 303
           V   + I   L  +  YL  LP AH
Sbjct: 211 VRRSVEIC-WLTQQTRYLCALPAAH 234

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 44/217 (20%), Positives = 79/217 (36%), Gaps = 18/217 (8%)

Query: 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYAS 164
           E +TY +  E     A     LG K+ + VAIF +    +        R  +    + + 
Sbjct: 23  EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSH 82

Query: 165 LGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGR 224
           L      Y ++++    +I  + +L     L  Q   V+H   +  +    +        
Sbjct: 83  LTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRH--RLVLDGDGELE------- 133

Query: 225 WKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVM--MTHGNVLATVSAV 282
                +A+        P+  D  +  D   ++Y+SG+TG PKG+   +        +   
Sbjct: 134 -GFVGYAEAVAGLPATPIA-DESLGTD---MLYSSGTTGRPKGIKRPLPEQPPDTPLPLT 188

Query: 283 MTIVPDLG--SKDVYLAYLPLAHVLELVAENLIAGVG 317
             +    G  S  VYL+  PL H     A  L+  +G
Sbjct: 189 AFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIRLG 225

Length = 511

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 40.9 bits (97), Expect = 0.002
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 14/91 (15%)

Query: 191 KLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGREN-----PVDAD 245
           K+ +L   L +++HV+     +P    +   +       + D             PV  D
Sbjct: 208 KVAELRAALPSLEHVVV----VPYLGPAAAAAALPGALLWEDFLAPAEAAELEFEPVPFD 263

Query: 246 YPVSADVAVIMYTSGSTGLPKGVMMTHGNVL 276
           +P+      I+Y+SG+TGLPK ++  HG +L
Sbjct: 264 HPL-----WILYSSGTTGLPKCIVHGHGGIL 289

Length = 655

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 40.9 bits (95), Expect = 0.002
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 9/82 (10%)

Query: 505 IVIAGPNVTVGYFKNEEKTKEVYKVDDKGMR--WFYTGDVGQVHADGCLEIIDRKKDIVK 562
           + + GP +T GY+ NEE T+             +F TGD+     +G +EI DR KD++K
Sbjct: 363 VQLKGPWITGGYYGNEEATRS------ALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIK 416

Query: 563 LQHGEYVSLGKVEAALIVSPYV 584
              GE++S   +E AL+  P V
Sbjct: 417 SG-GEWISSVDLENALMGHPKV 437

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 40.4 bits (94), Expect = 0.003
 Identities = 23/48 (47%), Positives = 34/48 (70%), Gaps = 3/48 (6%)

Query: 257 YTSGSTGLPKGVMMTH-GNVLATVSAVMTIVPDLGSKDVYLAYLPLAH 303
           YTSG+T  PKGV+++H G  L+T+SA+  I  ++G+  VYL  LP+ H
Sbjct: 193 YTSGTTADPKGVVISHRGAYLSTLSAI--IGWEMGTCPVYLWTLPMFH 238

Length = 579

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 14/67 (20%)

Query: 242 VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT-----IVPDLGSKDVYL 296
           VD D P         +TSG+TG PK  ++THG     ++ V+T     ++P    +D  L
Sbjct: 160 VDHDDP-----CWFFFTSGTTGRPKAAVLTHG----QMAFVITNHLADLMPGTTEQDASL 210

Query: 297 AYLPLAH 303
              PL+H
Sbjct: 211 VVAPLSH 217

Length = 528

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 10/64 (15%)

Query: 242 VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAY--L 299
           VD D P     A ++YTSG+TGLPKG  ++    L T + +     DL  +     Y  +
Sbjct: 84  VDPDDP-----AALIYTSGTTGLPKGCAISWRRTLVTSNPLSH---DLNLQFPDRTYTCM 135

Query: 300 PLAH 303
           PL H
Sbjct: 136 PLYH 139

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 40.0 bits (94), Expect = 0.004
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 238 RENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA 297
           R+           D+ ++++TSG++G PK V  TH  V A+   ++     LG  DV   
Sbjct: 140 RDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKV-ASAGVMLAQRFGLGPDDVCYV 198

Query: 298 YLPLAH 303
            +PL H
Sbjct: 199 SMPLFH 204

Length = 529

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	672
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PLN02654	666	acetate-CoA ligase	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	100.0
KOG3628	1363	consensus Predicted AMP-binding protein [General f	100.0
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	100.0
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.96
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.93
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.91
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.88
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.84
PRK09188	365	serine/threonine protein kinase; Provisional	99.77
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.56
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	98.7
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.7
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	98.24
PLN02249	597	indole-3-acetic acid-amido synthetase	97.62
PLN02247	606	indole-3-acetic acid-amido synthetase	97.37
PLN02620	612	indole-3-acetic acid-amido synthetase	97.33
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	93.99
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	90.04
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	86.94
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	86.38
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	81.46
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	80.82
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	80.29
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	80.11

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=3.7e-120  Score=906.69  Aligned_cols=630  Identities=56%  Similarity=0.887  Sum_probs=597.8

Q ss_pred             CCCCCCccCccCCCccccccccCCCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHH
Q 005874           32 DVGGEPGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQ  111 (672)
Q Consensus        32 ~~~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~e  111 (672)
                      .++.+|||..+.++   +...++++..|++++|++.++++.++.|+++|++++.+.|.+.||+.|++|++|+|.|+||.|
T Consensus        18 ~e~~p~Rnv~~~~~---L~~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~e   94 (678)
T KOG1180|consen   18 HETAPYRNVRSFDG---LVSPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNE   94 (678)
T ss_pred             CCCccccccccCCC---ccCCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHH
Confidence            44889999887666   888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCE-EEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchH
Q 005874          112 AFETICNFASGLAQLGHKKEER-VAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELK  190 (672)
Q Consensus       112 l~~~a~~la~~L~~~g~~~g~~-V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~  190 (672)
                      +..++.++|++|.+.|+++++. |+|+++.+.+|+.+++||++.|+++|.+|.+++.+.+.|.|++++++.+||+.++++
T Consensus        95 v~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~  174 (678)
T KOG1180|consen   95 VYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLP  174 (678)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHH
Confidence            9999999999999999998777 999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcCCCCccEEEEecCCCc----ccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCc
Q 005874          191 KLVDLSGQLDTVKHVICMDANIP----SAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPK  266 (672)
Q Consensus       191 ~l~~~~~~~~~l~~ii~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK  266 (672)
                      ++....+..+.++++|+++..+.    +..... ....+.+++|+++.+.++....++.++.++|+|+|||||||||.||
T Consensus       175 kl~~~l~~~~~vk~II~~d~id~~~~~~~v~~i-~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PK  253 (678)
T KOG1180|consen  175 KLKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSI-VRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPK  253 (678)
T ss_pred             HHHHHHhccCceeEEEEecCCCCccchhhhhhh-ccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCc
Confidence            99999999999999999995332    223333 2257999999999999999877777889999999999999999999


Q ss_pred             eEEeehHHHHHHHHHHHhhcCCCCCCcEEEEecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccc
Q 005874          267 GVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVL  346 (672)
Q Consensus       267 gV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~  346 (672)
                      ||+++|+|+++.+..+....+.+.+.|++++|+||+|++++.+.+.+++.|+.+++.+|.+|.+.++.+.+++-+++..+
T Consensus       254 GVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~l  333 (678)
T KOG1180|consen  254 GVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTEL  333 (678)
T ss_pred             eEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcCccccc
Confidence            99999999999999998887799999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEE
Q 005874          347 RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFIL  426 (672)
Q Consensus       347 k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~  426 (672)
                      |||+|.+||.+|+++.+.+.+++++.+.+.+.+|+.++.+|+..++     .++..++++|.++|+++|..+||+||.++
T Consensus       334 kPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~-----~~g~~s~~ld~lVFkKIr~~lGG~lR~~L  408 (678)
T KOG1180|consen  334 KPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIE-----RNGPGSPLLDALVFKKIRALLGGNLRYIL  408 (678)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHh-----ccCCchhhHHHHHHHHHHHHhCCceEEEE
Confidence            9999999999999999999999999999999999999999999987     36778999999999999999999999999


Q ss_pred             EcCCCCCHHHHHHHHHHhCCceecccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEE
Q 005874          427 SGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIV  506 (672)
Q Consensus       427 ~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~  506 (672)
                      +||+||+++.++++..+++||+.++||+||+|+.+++..+.+...+.+|.|+++++++++|++|++|.+.+.+ ++||||
T Consensus       409 sGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~P-PrGEI~  487 (678)
T KOG1180|consen  409 SGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKP-PRGEIL  487 (678)
T ss_pred             eCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhcccccccCCccceEEEEEEhhhcCccCCCCC-CCceEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998777 999999


Q ss_pred             EccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccce
Q 005874          507 IAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDN  586 (672)
Q Consensus       507 v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~  586 (672)
                      ++|+++..|||+||+.|++.|.. .++.+||+|||+|++.+||+|.|+||++|++|+.+||||+++.||.+|+.+|.|++
T Consensus       488 i~G~~vt~gY~kn~ekT~e~ft~-~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~N  566 (678)
T KOG1180|consen  488 IGGPNVTMGYYKNEEKTKEDFTV-EDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDN  566 (678)
T ss_pred             ecCCccChhhhCChhhhhhhcee-cCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchhh
Confidence            99999999999999999999984 22444999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCCeEEEEEEcChhHHHHHHHHcCh------------------------hhhhcCCCCCcceeEEEEeecCCC
Q 005874          587 IMMHADPFHSYCVALVVASQPAVEEWAAKQGI------------------------VGKNARLDKFEIPAKIKLLSYPWT  642 (672)
Q Consensus       587 ~~V~g~~~~~~~va~v~~~~~~~~~~~~~~~~------------------------~~~~~~L~~~~~p~~i~~~~~~~~  642 (672)
                      +||++++...++||+|||++..+..++++.++                        .++.++|.++++|..|++.+++|+
T Consensus       567 ICvyAd~~~s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l~~e~WT  646 (678)
T KOG1180|consen  567 ICVYADSNKSKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAKIVLSPEPWT  646 (678)
T ss_pred             eEEecccccceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccccceeEecCCCcC
Confidence            99999999999999999999998888887776                        566789999999999999999999


Q ss_pred             CCCCccccccccChHHHHHHHHHHHHhhhC
Q 005874          643 SEAGLVTAALKIKREAIRKAFADDLARLYE  672 (672)
Q Consensus       643 ~~~~~~t~~gKi~R~~l~~~~~~~i~~ly~  672 (672)
                      |+||++|+..|++|+.++..|+++||++|+
T Consensus       647 PenGlvT~A~KLKRk~I~~~~k~ei~~~Y~  676 (678)
T KOG1180|consen  647 PENGLVTAALKLKRKEILAAYKKEIDRLYK  676 (678)
T ss_pred             CCccccHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999995

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=4.3e-108  Score=860.42  Aligned_cols=600  Identities=39%  Similarity=0.657  Sum_probs=543.1

Q ss_pred             CCCCccCccCCCccccccccCCCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHH
Q 005874           34 GGEPGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAF  113 (672)
Q Consensus        34 ~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~  113 (672)
                      +.+||+...+..  ++....+++..|+++.|++.+..+|+.+|++.|...        ++       .+.|+|+||+|+.
T Consensus        53 ~~~~~s~~~~~~--~~~~~~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~--------~~-------~~~~~~~tY~q~~  115 (691)
T KOG1256|consen   53 DGSRRSAVLPRE--ELFSCPFDGPLTLYEGFRRSVEKSGNGPMLGTRVIV--------DG-------KGPYEWLTYKQVY  115 (691)
T ss_pred             CCceeeeeccCC--CCCCCCCCCcccHHHHhhcchhccCCCCceeEEecc--------cC-------CCCcEEEEHHHHH
Confidence            567888766531  233445678999999999999999999999998532        33       4789999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEEC-ccchHHH
Q 005874          114 ETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICG-SKELKKL  192 (672)
Q Consensus       114 ~~a~~la~~L~~~g~~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~-~~~~~~l  192 (672)
                      +++.++|++|+++|+++++.|||++-||+||+++.+||..+|.++||||++++++.+.+|++++.+.++|++ ++....+
T Consensus       116 e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~l  195 (691)
T KOG1256|consen  116 ERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKL  195 (691)
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999 6677777


Q ss_pred             Hhhhc--CCCCccEEEEecCCCcccccccccCCCeEEEeHHHHHhcccCCCCCC-CCCCCCCeEEEEeecCCCCCCceEE
Q 005874          193 VDLSG--QLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDA-DYPVSADVAVIMYTSGSTGLPKGVM  269 (672)
Q Consensus       193 ~~~~~--~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~a~i~~TSGTTG~PKgV~  269 (672)
                      .+...  .++.+|.+|.+++..........+ .++.+++|+++.+.+......+ .++++||.|+|+|||||||.|||||
T Consensus       196 l~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~-~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVM  274 (691)
T KOG1256|consen  196 LEIKENDSLPSLKAIIQLDEPSDELKEKAEN-NGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVM  274 (691)
T ss_pred             HhhcccccCccceeEEEecCCchhhhhhhhc-CCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEE
Confidence            77665  488999999999987766555555 5899999999999998777666 5899999999999999999999999


Q ss_pred             eehHHHHHHHHH---HHhhcC--CCCCCcEEEEecChHhHHHHHHHHHHhHhCcEEee--CCcccccCchhhhhcccccc
Q 005874          270 MTHGNVLATVSA---VMTIVP--DLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY--GTPLTLTDTSSKIKKGTQGD  342 (672)
Q Consensus       270 ~th~~l~~~~~~---~~~~~~--~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~--~~~~~l~~~~~~~~~~~~~~  342 (672)
                      +||+|+++.++.   .....+  ....+|++++|+||+|+++++.....++.|++++|  +|+..+.++           
T Consensus       275 LTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~d-----------  343 (691)
T KOG1256|consen  275 LTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDD-----------  343 (691)
T ss_pred             EeccceeehhhhhhhhhhcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHH-----------
Confidence            999999996654   222221  22337999999999999999999889999999999  888888888           


Q ss_pred             cccccceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHH-hhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCc
Q 005874          343 ASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRL-SAINGSWFGAWGLEKLLWNLLVFSKVRAILGGR  421 (672)
Q Consensus       343 i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  421 (672)
                      ++..+||.+.+||++|+++++.+.++.+..+.+++++|++|...|+ ..+..|-...   ..++||+++|+|++..+|++
T Consensus       344 lk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~---~~~~~D~lVf~KI~~~LGg~  420 (691)
T KOG1256|consen  344 LKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKLEHRLMKGKSRS---RDRFADKLVFHKIKQSLGGN  420 (691)
T ss_pred             HHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhCCCCcc---cchHHHHHHHHHHHHHhcCc
Confidence            9999999999999999999999999999999999999999999999 5455332222   57899999999999999999


Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHhCCceecccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCC
Q 005874          422 IRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMP  501 (672)
Q Consensus       422 lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~  501 (672)
                      +|.+++|++|+++++.++++..+|++|+++||+|||++.++.....+...+++|.|+|++++|++|+||++|.+   .+.
T Consensus       421 vr~~~sGaAPls~ev~~F~r~~~g~~v~eGYGlTEts~g~~~~~~~d~~lgsvG~p~p~~~vKL~dvpe~ny~a---~~~  497 (691)
T KOG1256|consen  421 VRLIISGAAPLSPEVLTFFRAALGCRVLEGYGLTETSAGTTLTLPGDNVLGSVGPPVPGNEVKLVDVPEMNYDA---DGS  497 (691)
T ss_pred             eeEEEecCCCCCHHHHHHHHHhcCceeeecccccccCCceEeccCCCCCCCCcCCcccCceEEEechHHhCcCc---CCC
Confidence            99999999999999999999999999999999999998888888877789999999999999999999999986   556


Q ss_pred             ccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcC
Q 005874          502 RGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVS  581 (672)
Q Consensus       502 ~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~  581 (672)
                      .|||||||++||.|||+||+.|+++|+    .|||+||||+|+|+++|.|+|+||+||+||+++||+|.|+.||+++.+.
T Consensus       498 ~GEIcirG~~Vf~GYyK~p~~T~e~id----eDGWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~  573 (691)
T KOG1256|consen  498 KGEICVRGPNVFMGYYKDPEKTAEAID----EDGWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRS  573 (691)
T ss_pred             cceEEEecchhceeccCChHHHhhhhc----cccccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcC
Confidence            899999999999999999999999999    9999999999999999999999999999999999999999999999999


Q ss_pred             cccceEEEEecCCCCeEEEEEEcChhHHHHHHHHcCh-----------------------hhhhcCCCCCcceeEEEEee
Q 005874          582 PYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQGI-----------------------VGKNARLDKFEIPAKIKLLS  638 (672)
Q Consensus       582 ~~V~~~~V~g~~~~~~~va~v~~~~~~~~~~~~~~~~-----------------------~~~~~~L~~~~~p~~i~~~~  638 (672)
                      +.|.+++|+|.+.+.+++|+|+|+++...+|+.+.++                       ....++|..++.++.|.+.+
T Consensus       574 ~~V~qi~V~g~s~~~~LvaiVvpd~e~~~~~a~~~~~~~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~  653 (691)
T KOG1256|consen  574 LPVQQIFVLGDSLRSFLVAIVVPDPEVLKSWAAKDGVKGTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLP  653 (691)
T ss_pred             CceEEEEEECCcchhcEEEEEecChhhchhhHHHccCchhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEec
Confidence            9999999999999999999999999998888775443                       45567899999999999999


Q ss_pred             cCCCCCCCccccccccChHHHHHHHHHHHHhhhC
Q 005874          639 YPWTSEAGLVTAALKIKREAIRKAFADDLARLYE  672 (672)
Q Consensus       639 ~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~~ly~  672 (672)
                      .+|+.+||++||+.|++|..+.++|+++||+||+
T Consensus       654 ~~FsienglltPTlK~KR~~l~~~yk~~Id~mY~  687 (691)
T KOG1256|consen  654 DPFSIENGLLTPTLKIKRPQLLKYYKKQIDELYK  687 (691)
T ss_pred             ccccccCCccchhhhhhhHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999995

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=7.1e-99  Score=854.70  Aligned_cols=668  Identities=77%  Similarity=1.246  Sum_probs=579.6

Q ss_pred             CcceEEeeeeeEEEEEEecccccccccccccCC----CCCCccCccCCCccccccccCCCCCCHHHHHHHHHHHcCCCCc
Q 005874            1 MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDV----GGEPGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYL   76 (672)
Q Consensus         1 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~a   76 (672)
                      |.+|.++.+.|.++.....+.++..++.++...    +.+||++..+ +   +...++++..|+.++|+++++++||++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~---~~~~~~~~~~t~~~l~~~~~~~~pd~~a   76 (696)
T PLN02387          1 MGAYIVGVLVPLLLTLLLRGSKKGKKRGVPVDVGGEPGYAIRNARFP-E---LVETPWEGATTLAALFEQSCKKYSDKRL   76 (696)
T ss_pred             CceEEEEecchhheeechhcccccccceecCCCCCCCCCceecCccc-c---ccccCCCCCCCHHHHHHHHHHHCCCCce
Confidence            678999999999998888877777777777664    3478888744 3   5555678899999999999999999999


Q ss_pred             eEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCc
Q 005874           77 LGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNV  156 (672)
Q Consensus        77 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e~~~~~lA~~~~G~  156 (672)
                      +++|.....+.+.+++|+.|++...|+|+++||+|+.++++++|++|.++|+++|++|+|+++|++||+++++||+++|+
T Consensus        77 l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~  156 (696)
T PLN02387         77 LGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNI  156 (696)
T ss_pred             EEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC
Confidence            99875443333344477778888889999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccccccccCCCeEEEeHHHHHhc
Q 005874          157 TVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQIL  236 (672)
Q Consensus       157 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (672)
                      ++||++++++++++.+++++++++++|++.+..+.+.+....++.++.++++++.............++.+.+|+++...
T Consensus       157 v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (696)
T PLN02387        157 TVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKL  236 (696)
T ss_pred             eEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHh
Confidence            99999999999999999999999999999988888888777888899999987643221111111235677889998877


Q ss_pred             ccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEEEecChHhHHHHHHHHHHhHh
Q 005874          237 GRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGV  316 (672)
Q Consensus       237 ~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~  316 (672)
                      +...+.+...+.+||+++|+|||||||.||||++||+|+++.+......++.++++|++++++|++|++++...+.++..
T Consensus       237 ~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~  316 (696)
T PLN02387        237 GKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAHILELAAESVMAAV  316 (696)
T ss_pred             hccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCCCEEEEECcHHHHHHHHHHHHHHHh
Confidence            65544444456789999999999999999999999999999888776654468899999999999999999988888999


Q ss_pred             CcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCc
Q 005874          317 GSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWF  396 (672)
Q Consensus       317 G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (672)
                      |++++++.+..+.+....+...+..+++.++||+++++|++++++.+....+....+.+++.+|++++..++..+.+.++
T Consensus       317 g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~  396 (696)
T PLN02387        317 GAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWF  396 (696)
T ss_pred             CCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCc
Confidence            99999977776665433334455666999999999999999999999988888888899999999999999998877777


Q ss_pred             CCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCcccccccccccCCCCCCCCccCC
Q 005874          397 GAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGA  476 (672)
Q Consensus       397 ~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~  476 (672)
                      +..+..+++||.++|++++..+|+++|.+++||+++++++.++++..+|++++++||+||+++.++.....+...+++|.
T Consensus       397 ~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~~~gsvG~  476 (696)
T PLN02387        397 GAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVGRVGP  476 (696)
T ss_pred             ccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcCCCeeEeechhhcccceeecCcccCCCCccCC
Confidence            76778889999999999999999999999999999999999999988999999999999998877766666666789999


Q ss_pred             CcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEec
Q 005874          477 PLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDR  556 (672)
Q Consensus       477 p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR  556 (672)
                      |+|+++++|+|++++++...+.+++.|||+|+||+++.|||++|+.|+++|..+.++.|||+|||+|++|+||.|+|+||
T Consensus       477 p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR  556 (696)
T PLN02387        477 PLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDR  556 (696)
T ss_pred             CCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEc
Confidence            99999999999888887765566778999999999999999999999999853333446999999999999999999999


Q ss_pred             CCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCCCeEEEEEEcChhHHHHHHHHcCh------------------
Q 005874          557 KKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQGI------------------  618 (672)
Q Consensus       557 ~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~~~~va~v~~~~~~~~~~~~~~~~------------------  618 (672)
                      +||+||+++|++|+|++||++|.+||.|.+|+|+|++.+.+++|+|+|+++....|+.+.++                  
T Consensus       557 ~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  636 (696)
T PLN02387        557 KKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFHSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEV  636 (696)
T ss_pred             ccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCCcceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHH
Confidence            99999998899999999999999999999999999998889999999999988777654432                  


Q ss_pred             ------hhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHHHHhhhC
Q 005874          619 ------VGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLYE  672 (672)
Q Consensus       619 ------~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~~ly~  672 (672)
                            ...+++|+.|++|++|.+++++|++++|++|+++|++|+.++++|+++|++||+
T Consensus       637 ~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~  696 (696)
T PLN02387        637 QQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTAALKLKREQIRKKFKDDLKKLYE  696 (696)
T ss_pred             HHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCChhhhhhhHHHHHHHHHHHHHHhC
Confidence                  123468999999999999999999999999999999999999999999999996

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1.8e-89  Score=773.90  Aligned_cols=606  Identities=33%  Similarity=0.576  Sum_probs=497.6

Q ss_pred             cccCCCCCCccCccCCCccccccccCCCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEee
Q 005874           29 IPVDVGGEPGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLT  108 (672)
Q Consensus        29 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~T  108 (672)
                      .....+++||+.....+++    .+.+...|+.++|++.++++||++|+..++..        ++.      .++++++|
T Consensus        20 ~~~~~~~~~~~~~~~~~~~----~~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~--------~~~------~~~~~~~T   81 (666)
T PLN02614         20 GRPSVGPVYRSIFAKDGFP----NPIEGMDSCWDVFRMSVEKYPNNPMLGRREIV--------DGK------PGKYVWQT   81 (666)
T ss_pred             CCCCCCCcccCcccccccC----CCCCCCCcHHHHHHHHHHhCCCCCeEEEeccc--------CCC------CCCcEEeE
Confidence            3344578899886555532    23466779999999999999999999865211        222      24567899


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccc
Q 005874          109 YGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKE  188 (672)
Q Consensus       109 y~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~  188 (672)
                      |+|+.++++++|++|.++|+++||+|+|+++|++||++++|||+++|+++||+++.++++++.+++++++++++|++++.
T Consensus        82 y~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~  161 (666)
T PLN02614         82 YQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKK  161 (666)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             hHHHHhhhcC-CCCccEEEEecCCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCce
Q 005874          189 LKKLVDLSGQ-LDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKG  267 (672)
Q Consensus       189 ~~~l~~~~~~-~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKg  267 (672)
                      ...+...... .+.++.++.++........... ..++.+.+++++...+.....+.....++|+++|+|||||||.|||
T Consensus       162 ~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKG  240 (666)
T PLN02614        162 ISELFKTCPNSTEYMKTVVSFGGVSREQKEEAE-TFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKG  240 (666)
T ss_pred             HHHHHHhcccccccceEEEEeCCCChHHhhhhh-hcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcE
Confidence            5555433222 2346777777543211100000 1234567888887654322222233467999999999999999999


Q ss_pred             EEeehHHHHHHHHHHHhhc----CCCCCCcEEEEecChHhHHHHHHHHHHhHhCcEEee--CCcccccCchhhhhccccc
Q 005874          268 VMMTHGNVLATVSAVMTIV----PDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY--GTPLTLTDTSSKIKKGTQG  341 (672)
Q Consensus       268 V~~th~~l~~~~~~~~~~~----~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~--~~~~~l~~~~~~~~~~~~~  341 (672)
                      |++||+|+++.+......+    ..++++|++++++|++|++++...+.++..|+++++  +++..+.+.          
T Consensus       241 V~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~----------  310 (666)
T PLN02614        241 VMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIED----------  310 (666)
T ss_pred             EEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHH----------
Confidence            9999999998877655443    157889999999999999998776677889999988  455666666          


Q ss_pred             ccccccceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCc
Q 005874          342 DASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGR  421 (672)
Q Consensus       342 ~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  421 (672)
                       +++++||+++++|++|+.+++.+.......+.+++++|+++...+...+..+.  .....+++++.+++++++..++++
T Consensus       311 -i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lg~~  387 (666)
T PLN02614        311 -LGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQ--SHVEASPLCDKLVFNKVKQGLGGN  387 (666)
T ss_pred             -HHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCC--CCcccchHHHHHHHHHHHHHhCCc
Confidence             99999999999999999999988777777778889999999988876665321  112246788999999999999999


Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHhCCceecccCcccccccccccCCCC-CCCCccCCCcCCeEEEEEecCCCCcccCCCCC
Q 005874          422 IRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDD-SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPM  500 (672)
Q Consensus       422 lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g  500 (672)
                      ||.+++||+++++++.++++...+++++++||+||+++.++.....+ ...+++|.|+|+++++|+|++++++.+ +++|
T Consensus       388 lr~~~~Gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~-~~~g  466 (666)
T PLN02614        388 VRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDA-LAST  466 (666)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHhcCCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCccc-CCCC
Confidence            99999999999998766555443689999999999986554443332 245899999999999999966654333 4578


Q ss_pred             CccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhc
Q 005874          501 PRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIV  580 (672)
Q Consensus       501 ~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~  580 (672)
                      +.|||+|+||+++.|||++|+.|++.|     .+|||+|||+|++|+||.|+|+||+||+||+++|++|+|++||++|.+
T Consensus       467 ~~GEl~vrGp~v~~GY~~~pe~T~~~f-----~dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~  541 (666)
T PLN02614        467 PRGEICIRGKTLFSGYYKREDLTKEVL-----IDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGE  541 (666)
T ss_pred             CCceEEEcCCcccccccCCHHHhhhhh-----ccCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhc
Confidence            999999999999999999999999999     578999999999999999999999999999878999999999999999


Q ss_pred             CcccceEEEEecCCCCeEEEEEEcChhHHHHHHHHcCh-----------------------hhhhcCCCCCcceeEEEEe
Q 005874          581 SPYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQGI-----------------------VGKNARLDKFEIPAKIKLL  637 (672)
Q Consensus       581 ~~~V~~~~V~g~~~~~~~va~v~~~~~~~~~~~~~~~~-----------------------~~~~~~L~~~~~p~~i~~~  637 (672)
                      ||.|.+|+|+|++.+.+++|+|+|+.+....|+.+.++                       ...+++|++|++|++|.++
T Consensus       542 ~p~V~~~~V~g~~~~~~l~alvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~  621 (666)
T PLN02614        542 VQAVDSVWVYGNSFESFLVAIANPNQQILERWAAENGVSGDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLD  621 (666)
T ss_pred             CCCeeEEEEEecCCcceEEEEEeCCHHHHHHHHHhcCCCcCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEe
Confidence            99999999999988889999999999888777654331                       1125689999999999999


Q ss_pred             ecCCCCCCCccccccccChHHHHHHHHHHHHhhhC
Q 005874          638 SYPWTSEAGLVTAALKIKREAIRKAFADDLARLYE  672 (672)
Q Consensus       638 ~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~~ly~  672 (672)
                      +++|+++||++|+++|++|+.+.+.|+++|++||+
T Consensus       622 ~~~f~~~ng~lTpt~K~kR~~i~~~y~~~i~~ly~  656 (666)
T PLN02614        622 PVPFDMERDLLTPTFKKKRPQLLKYYQSVIDEMYK  656 (666)
T ss_pred             CCCCCCcCCcCCHhhhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999995

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.7e-89  Score=769.88  Aligned_cols=588  Identities=23%  Similarity=0.368  Sum_probs=497.6

Q ss_pred             CCCCccCccCCCccccccccCCCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHH
Q 005874           34 GGEPGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAF  113 (672)
Q Consensus        34 ~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~  113 (672)
                      |++||.....++      .++....|+.++|.+.++++|+++|+...+          +|.        .++++||+|+.
T Consensus        43 ~~~~~~~~~~~~------~~~~~~~~l~~~l~~~~~~~p~~~Al~~~~----------~g~--------~~~~~Ty~el~   98 (746)
T PTZ00342         43 SSVYCMKDHKKK------SSLYVYKHIMKLLLEKYKLNNNKIAIVEHS----------CGE--------PQNYITYGNFF   98 (746)
T ss_pred             CCceecCchhhc------ccccccchHHHHHHHHHhhcCCceeEeccC----------CCC--------CceeeeHHHHH
Confidence            789997665554      445778999999999999999999997521          232        36789999999


Q ss_pred             HHHHHHHHHHHhc---CCCCC-----------CEEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccc
Q 005874          114 ETICNFASGLAQL---GHKKE-----------ERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV  179 (672)
Q Consensus       114 ~~a~~la~~L~~~---g~~~g-----------~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~  179 (672)
                      +++.++|++|.++   |+++|           |+|+|+++|++||+++++||+++|+++||++++++++++.++|+++++
T Consensus        99 ~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~  178 (746)
T PTZ00342         99 KKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKL  178 (746)
T ss_pred             HHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCC
Confidence            9999999999974   99998           999999999999999999999999999999999999999999999999


Q ss_pred             eEEEECccchHHHHhhhcCCCCccEEEEecCCCccc--------------------cc----------------------
Q 005874          180 TTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSA--------------------VS----------------------  217 (672)
Q Consensus       180 ~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~--------------------~~----------------------  217 (672)
                      ++||++.+..+.+.+....++.++.+++++......                    ..                      
T Consensus       179 ~~lv~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (746)
T PTZ00342        179 EWLCLDLDLVEGLLERKNELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPL  258 (746)
T ss_pred             CEEEEcHHHHHHHHHhhccCCCceEEEEECCCCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999888888888777888999999987532110                    00                      


Q ss_pred             -----------cc---ccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHH
Q 005874          218 -----------SV---EQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVM  283 (672)
Q Consensus       218 -----------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~  283 (672)
                                 ..   ....+..+..|+++..... ...+.....+||+++|+|||||||.||||++||+|+++.+....
T Consensus       259 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~  337 (746)
T PTZ00342        259 EYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKT-TNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLC  337 (746)
T ss_pred             ccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhcc-cCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHh
Confidence                       00   0001234455666554422 12223445689999999999999999999999999999887665


Q ss_pred             hhc-CCCCCCcEEEEecChHhHHHHHHHHHHhHhCcEEee--CCcccccCchhhhhcccccccccccceeeecchHHHHH
Q 005874          284 TIV-PDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY--GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR  360 (672)
Q Consensus       284 ~~~-~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~--~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~  360 (672)
                      ... ....+.|++++++|++|++++...+.+++.|+++++  .++..+.++           +++++||+++++|++|++
T Consensus       338 ~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~d-----------i~~~~pT~~~~VP~v~~~  406 (746)
T PTZ00342        338 KHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKD-----------IYNSKGNILAGVPKVFNR  406 (746)
T ss_pred             hcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHH-----------HHHhCCcEEEchHHHHHH
Confidence            432 012356899999999999999888889999999998  566677776           999999999999999999


Q ss_pred             HHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHH--HHHHHHHHcCCceEEEEEcCCCCCHHHHH
Q 005874          361 VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLL--VFSKVRAILGGRIRFILSGGAPLSADTQR  438 (672)
Q Consensus       361 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~lr~i~~gG~~l~~~~~~  438 (672)
                      |++.+..+....+.+++.+|++++..+.....       +..+++++.+  +|+++++.+|++||.+++||+++++++.+
T Consensus       407 i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~  479 (746)
T PTZ00342        407 IYTNIMTEINNLPPLKRFLVKKILSLRKSNNN-------GGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAE  479 (746)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhc-------CCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHH
Confidence            99999888888888999999999998877543       2245677765  79999999999999999999999999999


Q ss_pred             HHHHHhCCceecccCcccccccccccCCCCCCCCccCCCc-CCeEEEEEecCCCCcccCCCCCCccEEEEccCccccccc
Q 005874          439 FINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPL-PCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYF  517 (672)
Q Consensus       439 ~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~-~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~  517 (672)
                      +|+..+|++++++||+||+++.++.....+...+++|.|+ |+++++|+|+++....   +.++.|||+++||+++.|||
T Consensus       480 ~~~~~~g~~i~~gYGlTEt~~~~~~~~~~~~~~gsvG~p~~pg~e~ki~d~~~~~~~---~~~~~GEl~vrGp~v~~GY~  556 (746)
T PTZ00342        480 ELSVLLNVNYYQGYGLTETTGPIFVQHADDNNTESIGGPISPNTKYKVRTWETYKAT---DTLPKGELLIKSDSIFSGYF  556 (746)
T ss_pred             HHHHhcCCCEEEeeccCcccceeeeccCCCCCcccccCcCCCcEEEEEecccccccC---CCCCceEEEEecCccccccc
Confidence            9999899999999999999887776666666779999998 9999999996543322   24468999999999999999


Q ss_pred             CCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCCCe
Q 005874          518 KNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSY  597 (672)
Q Consensus       518 ~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~~~  597 (672)
                      ++|+.|+++|+    .+|||+|||+|++|+||.|+|+||+||+||+++|++|+|.+||++|.+||.|.+|+|+|++...+
T Consensus       557 ~~pe~T~~~f~----~dGW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~~~  632 (746)
T PTZ00342        557 LEKEQTKNAFT----EDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDG  632 (746)
T ss_pred             CChhhhhhhcC----cCCcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCccc
Confidence            99999999997    79999999999999999999999999999998899999999999999999999999999876779


Q ss_pred             EEEEEEcChhHHHHHHHHcC------h-----------------------------hhhhcCCCCCcceeEEEEeecCCC
Q 005874          598 CVALVVASQPAVEEWAAKQG------I-----------------------------VGKNARLDKFEIPAKIKLLSYPWT  642 (672)
Q Consensus       598 ~va~v~~~~~~~~~~~~~~~------~-----------------------------~~~~~~L~~~~~p~~i~~~~~~~~  642 (672)
                      ++|+|+|+.+....|+++.+      +                             ...+++|++|+++++|++++++|+
T Consensus       633 ~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t  712 (746)
T PTZ00342        633 PLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDETINNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWD  712 (746)
T ss_pred             cEEEEECCHHHHHHHHHhcCCccccccCcccHHHHhhhhhhccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCC
Confidence            99999999988877765321      0                             112458999999999999999999


Q ss_pred             CCCCccccccccChHHHHHHHH---HHHHhhhC
Q 005874          643 SEAGLVTAALKIKREAIRKAFA---DDLARLYE  672 (672)
Q Consensus       643 ~~~~~~t~~gKi~R~~l~~~~~---~~i~~ly~  672 (672)
                      + +|++||+.|++|+.+.+.|+   +.|++||+
T Consensus       713 ~-~~~lTpt~KlkR~~v~~~y~~~i~~i~~~y~  744 (746)
T PTZ00342        713 T-NNYLTPTFKVKRFYVFKDYAFFIDQVKKIYK  744 (746)
T ss_pred             C-CCccChhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence            9 57999999999999999999   77778884

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=7.7e-90  Score=736.05  Aligned_cols=565  Identities=36%  Similarity=0.551  Sum_probs=481.0

Q ss_pred             CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874           55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV  134 (672)
Q Consensus        55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V  134 (672)
                      ....++..++.+.++.+|+..|+....                   .+.++.+||+|+.+++..+|++|++.|+.+||+|
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~a~~~~~-------------------~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrv   73 (613)
T COG1022          13 AEIHTLPKRLAERVKDRPDGVALMYKE-------------------LGGWEAITYRELYERVRALASGLLSLGIPAGDRV   73 (613)
T ss_pred             hhcccHHHHHHHHhhcCCcceeEeeec-------------------CCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence            345789999999999999988887642                   4578899999999999999999999999779999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccch-HHHHhhhcCCCCccEEEEecC---
Q 005874          135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL-KKLVDLSGQLDTVKHVICMDA---  210 (672)
Q Consensus       135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-~~l~~~~~~~~~l~~ii~~~~---  210 (672)
                      +|++.|+++|+++.+||+.+|++.||++++.+++++.++|+++++++||++.... +.+..+....+.+...+....   
T Consensus        74 ai~a~nr~eW~i~d~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (613)
T COG1022          74 AIFAANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVR  153 (613)
T ss_pred             EEEeCCCHHHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhh
Confidence            9999999999999999999999999999999999999999999999999998554 444444443332222221111   


Q ss_pred             CCcccc-cccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCC
Q 005874          211 NIPSAV-SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL  289 (672)
Q Consensus       211 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~  289 (672)
                      ...... .............+ .+..  ........++.+||+|+|+|||||||.|||||+||+|+++++..+.+.++.+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~  230 (613)
T COG1022         154 EAVEAKALVLEVFPDEGISLF-LIDS--AGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPI  230 (613)
T ss_pred             hccchhhccccccccccchhh-hhcc--cccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCC
Confidence            000000 00000000111111 1111  1111122567899999999999999999999999999999999999988338


Q ss_pred             CCCcEEEEecChHhHHHHHH-HHHHhHhCcEEee-CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHH
Q 005874          290 GSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY-GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRK  367 (672)
Q Consensus       290 ~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~-~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~  367 (672)
                      +++|++++++|++|++++.. ....++.|+++.+ .++.++.++           ++.++||.+++||++|+.+.+.+.+
T Consensus       231 ~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~~~~~~~~~~d-----------l~~~rPt~m~~VPRvwE~i~~~I~~  299 (613)
T COG1022         231 GPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFKEDPRTLLED-----------LKEVRPTVMIGVPRVWEKVYKGIME  299 (613)
T ss_pred             CCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEEecCCHHHHHHH-----------HHHhCCeEEeechHHHHHHHHHHHH
Confidence            99999999999999999997 5566777777777 888888888           9999999999999999999999999


Q ss_pred             hhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCch-hhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCC
Q 005874          368 KVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGL-EKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGA  446 (672)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~  446 (672)
                      +....+...+++|++++..+.........+.... .....|+|+|+|+++.+|+++|.+++||+++++++..+++.. |+
T Consensus       300 kv~~~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi  378 (613)
T COG1022         300 KVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GI  378 (613)
T ss_pred             HHHhcchhHHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CC
Confidence            9999999999999999987755443333333322 344589999999999999999999999999999999999986 89


Q ss_pred             ceecccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhh
Q 005874          447 PIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEV  526 (672)
Q Consensus       447 ~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~  526 (672)
                      ++.++||+|||++.+++.++.....+++|.|+|++|+||+|              .|||+||||+|++|||++|+.|+++
T Consensus       379 ~i~eGYGlTEts~~~~v~~~~~~~~gtvG~p~p~~evKI~d--------------~GEilVRG~~Vm~GYyk~pe~Taea  444 (613)
T COG1022         379 PILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKIAD--------------DGEILVRGPNVMKGYYKNPEATAEA  444 (613)
T ss_pred             CeEEEecccccccceEEccccCcccCCcCCcCCCceEEEcc--------------CceEEEecchhcchhcCChHHHhhh
Confidence            99999999999999999999999999999999999999999              5999999999999999999999999


Q ss_pred             cccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCCCeEEEEEEcCh
Q 005874          527 YKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVALVVASQ  606 (672)
Q Consensus       527 ~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~~~~va~v~~~~  606 (672)
                      |+    +||||+|||+|.+|++|.|+|+||+||+||+++|++|+|+.||+.+.++|.|.+++|+| +++.+++|+|+|+.
T Consensus       445 f~----~DGWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~k~~~~AlIvp~~  519 (613)
T COG1022         445 FT----EDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DDKKFLVALIVPDF  519 (613)
T ss_pred             cc----ccCCcccCceeEEcCCCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe-cCCcceEEEEeCCH
Confidence            98    89999999999999999999999999999999999999999999999999999999999 77889999999999


Q ss_pred             hHHHHHHHHcCh-----------------------hhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHH
Q 005874          607 PAVEEWAAKQGI-----------------------VGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAF  663 (672)
Q Consensus       607 ~~~~~~~~~~~~-----------------------~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~  663 (672)
                      +....|+.....                       .....+++.++.++++.+.+.+++++++.+|++.|++|+.+.+.|
T Consensus       520 ~~l~~~a~~~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~~~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~  599 (613)
T COG1022         520 DALEKWAESLNKVISASREELARDPKLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRY  599 (613)
T ss_pred             HHHHHHHHhccccccCCHHHHhhCHHHHHHHHHHHHHHhhcccchhhhheeeecccccccccCccccchhhhHHHHHHhh
Confidence            999988775552                       333456688899999999999999999999999999999999999


Q ss_pred             HHHHHhhhC
Q 005874          664 ADDLARLYE  672 (672)
Q Consensus       664 ~~~i~~ly~  672 (672)
                      .+.|+.+|.
T Consensus       600 ~~~i~~~y~  608 (613)
T COG1022         600 KDEIEAVYS  608 (613)
T ss_pred             hhHHHHHhh
Confidence            999999984

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=4e-88  Score=765.29  Aligned_cols=602  Identities=35%  Similarity=0.626  Sum_probs=511.2

Q ss_pred             CCCCccCccCCCccccccccCCCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHH
Q 005874           34 GGEPGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAF  113 (672)
Q Consensus        34 ~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~  113 (672)
                      +.+||+...+.++-+.. ...+...|++++|++.++++||++|++.+...        ++.      .++++++||+|+.
T Consensus        21 ~~~~~~~~~~~~~~~~~-~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~--------~~~------~~~~~~lTy~el~   85 (651)
T PLN02736         21 WNVYRSARSPLKLVSRF-PDHPEIGTLHDNFVYAVETFRDYKYLGTRIRV--------DGT------VGEYKWMTYGEAG   85 (651)
T ss_pred             CCeecCccccccccccC-CCCCCCCCHHHHHHHHHHhCCCCCeEEEEecC--------CCC------CCCcEEEEHHHHH
Confidence            78999877665522111 23467789999999999999999999764211        333      3467889999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHH
Q 005874          114 ETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLV  193 (672)
Q Consensus       114 ~~a~~la~~L~~~g~~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~  193 (672)
                      ++++++|++|.++|+++||+|+|+++|++||+++++||+++|+++||+++.++++++.+++++++++++|++.+..+.+.
T Consensus        86 ~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~  165 (651)
T PLN02736         86 TARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLL  165 (651)
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988887777


Q ss_pred             hhhcCCCCccEEEEecCCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehH
Q 005874          194 DLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHG  273 (672)
Q Consensus       194 ~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~  273 (672)
                      .....++.++.++.++...... .......+....+|+++.......+.+.....+|++++|+|||||||.||||++||+
T Consensus       166 ~~~~~~~~l~~ii~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~  244 (651)
T PLN02736        166 SCLSEIPSVRLIVVVGGADEPL-PSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHG  244 (651)
T ss_pred             HHhhcCCCceEEEEECCCchhh-hhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecH
Confidence            7767778888888775322111 001111245677899887665433333344578999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCcEEEEecChHhHHHHHHHHHHhHhCcEEee--CCcccccCchhhhhcccccccccccceee
Q 005874          274 NVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY--GTPLTLTDTSSKIKKGTQGDASVLRPTVM  351 (672)
Q Consensus       274 ~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~--~~~~~l~~~~~~~~~~~~~~i~~~k~t~~  351 (672)
                      |+++.+.+....+ .+.++|++++++|++|++++...+.++..|+++++  +++..+++.           +++++||++
T Consensus       245 ~l~~~~~~~~~~~-~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~-----------i~~~~~t~~  312 (651)
T PLN02736        245 NLIANVAGSSLST-KFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDD-----------LAALRPTIF  312 (651)
T ss_pred             HHHHHHHHHHhcc-CCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHH-----------HHHhCCcEE
Confidence            9999988888777 88899999999999999999888889999999988  445555555           999999999


Q ss_pred             ecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCC
Q 005874          352 ASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAP  431 (672)
Q Consensus       352 ~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~  431 (672)
                      +++|++|+.+.+.+.......+.+.+.+|++++..+...+..+.     ...+.++++++++++..+|+++|.+++||++
T Consensus       313 ~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~  387 (651)
T PLN02736        313 CSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGK-----NPSPMWDRLVFNKIKAKLGGRVRFMSSGASP  387 (651)
T ss_pred             ecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCC-----CCCchHHHHHHHHHHHHhcCcEEEEEeCCCC
Confidence            99999999999998888888899999999999888776655221     1345778899999999999999999999999


Q ss_pred             CCHHHHHHHHHHhCCceecccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCc
Q 005874          432 LSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPN  511 (672)
Q Consensus       432 l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~  511 (672)
                      +++++.++++..+|++++++||+||+++.++.....+...+++|.|+|+++++|+|.+++.+...+.+++.|||+|+||+
T Consensus       388 l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~  467 (651)
T PLN02736        388 LSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPI  467 (651)
T ss_pred             CCHHHHHHHHHHhCCCeEEEechHHhchheeccCCCCCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCc
Confidence            99999999999899999999999999877766655556678999999999999999666554444456678999999999


Q ss_pred             ccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEe
Q 005874          512 VTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHA  591 (672)
Q Consensus       512 v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g  591 (672)
                      ++.|||++|+.|++.|+    .+|||+|||+|++|+||.|+|+||+||+||+++|++|+|.+||++|.+||.|.+|+|+|
T Consensus       468 v~~GY~~~~~~t~~~~~----~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g  543 (651)
T PLN02736        468 IFKGYYKDEVQTREVID----EDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYG  543 (651)
T ss_pred             cccccccCHHHHHhhhc----cCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEe
Confidence            99999999999999997    78999999999999999999999999999987899999999999999999999999999


Q ss_pred             cCCCCeEEEEEEcChhHHHHHHHHcCh------------------------hhhhcCCCCCcceeEEEEeecCCCCCCCc
Q 005874          592 DPFHSYCVALVVASQPAVEEWAAKQGI------------------------VGKNARLDKFEIPAKIKLLSYPWTSEAGL  647 (672)
Q Consensus       592 ~~~~~~~va~v~~~~~~~~~~~~~~~~------------------------~~~~~~L~~~~~p~~i~~~~~~~~~~~~~  647 (672)
                      ....++++|+|+++++....|.....+                        ...+++|+.|++|++|.+++++|+++||+
T Consensus       544 ~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  623 (651)
T PLN02736        544 DSLNSSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGL  623 (651)
T ss_pred             cCCCceeEEEEEeCHHHHHHHHHHcCCCccCHHHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCc
Confidence            766678999999998766555432221                        01134799999999999999999999999


Q ss_pred             cccccccChHHHHHHHHHHHHhhhC
Q 005874          648 VTAALKIKREAIRKAFADDLARLYE  672 (672)
Q Consensus       648 ~t~~gKi~R~~l~~~~~~~i~~ly~  672 (672)
                      +|++||++|++++++|+++|++||+
T Consensus       624 lT~~~Ki~R~~i~~~~~~~i~~~y~  648 (651)
T PLN02736        624 LTPTFKVKRPQAKAYFAKAISDMYA  648 (651)
T ss_pred             CChhhhhhHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999995

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=9.1e-88  Score=760.89  Aligned_cols=617  Identities=31%  Similarity=0.546  Sum_probs=505.5

Q ss_pred             EEEEecccccccccccccCCCCCCccCccCCCccccccccCCCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCC
Q 005874           14 FTLLLRNSKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNG   93 (672)
Q Consensus        14 ~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g   93 (672)
                      ||..+++..++-  ......+++||+....+.+.+    ..++..|++++|+++++++|+++|++.+...        ++
T Consensus         5 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~t~~~~l~~~~~~~p~~~al~~~~~~--------~~   70 (660)
T PLN02861          5 YTVKVEESRPAT--GGKPSAGPVYRSIYAKDGLLD----LPADIDSPWQFFSDAVKKYPNNQMLGRRQVT--------DS   70 (660)
T ss_pred             ceeeeccCCCCC--CCCCCCCCccccccccccccc----CCCCCCCHHHHHHHHHHhCCCCCeEEEEecC--------CC
Confidence            455555555432  233445888999876665322    2367789999999999999999999875211        22


Q ss_pred             cccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHH
Q 005874           94 RSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYS  173 (672)
Q Consensus        94 ~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~  173 (672)
                      +      .|+++++||+|+.++++++|++|.++|+++||+|+|+++|++||++++|||+++|+++||+++.++.+++.++
T Consensus        71 ~------~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~i  144 (660)
T PLN02861         71 K------VGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFI  144 (660)
T ss_pred             C------CCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHH
Confidence            2      3567789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcccceEEEECccchHHHHhhhcCCC-CccEEEEecCCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCe
Q 005874          174 LNETEVTTVICGSKELKKLVDLSGQLD-TVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADV  252 (672)
Q Consensus       174 l~~~~~~~vi~~~~~~~~l~~~~~~~~-~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  252 (672)
                      +++++++++|++.+..+.+.......+ .++.++.+++......... ...+....+|+++...+... .......+||+
T Consensus       145 l~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dd~  222 (660)
T PLN02861        145 INHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEA-EELGVSCFSWEEFSLMGSLD-CELPPKQKTDI  222 (660)
T ss_pred             HHcCCCCEEEECHHHHHHHHHhhhhCCCCCEEEEEECCCChhhhhhh-hcCCcEEEEHHHHHHhCccc-CCCCccCCCce
Confidence            999999999999877666655444443 5778887764321110000 11234567888877654321 12234568999


Q ss_pred             EEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcC----CCCCCcEEEEecChHhHHHHHHHHHHhHhCcEEee--CCcc
Q 005874          253 AVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP----DLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY--GTPL  326 (672)
Q Consensus       253 a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~----~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~--~~~~  326 (672)
                      ++|+|||||||.||||++||+|+++.+......+.    .+.++|++++++|++|++++...+.+++.|+++++  +++.
T Consensus       223 a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~  302 (660)
T PLN02861        223 CTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIR  302 (660)
T ss_pred             EEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHH
Confidence            99999999999999999999999998777655441    25789999999999999998877778999999988  4556


Q ss_pred             cccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHH
Q 005874          327 TLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLW  406 (672)
Q Consensus       327 ~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (672)
                      .+.+.           +++++||+++++|++|+.+++.+..+....+.+++.+|+++...++..+..+..  ....++.+
T Consensus       303 ~~~~~-----------i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~--~~~~~~~~  369 (660)
T PLN02861        303 YLMED-----------VQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLK--QEEASPRL  369 (660)
T ss_pred             HHHHH-----------HHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCC--CcCccHhH
Confidence            66666           999999999999999999999998888888999999999999999887763321  11235678


Q ss_pred             HHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhC-CceecccCcccccccccccCCCC-CCCCccCCCcCCeEEE
Q 005874          407 NLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLG-APIGQGYGLTETCAGGTFSEVDD-SSVGRVGAPLPCSFIK  484 (672)
Q Consensus       407 ~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~v~~~YG~TE~~~~~~~~~~~~-~~~~~~G~p~~~~~v~  484 (672)
                      +.+.+++++..+|+++|.+++||+++++++.++++ .++ .+++++||+||+++.++...... ...+++|.|+|+++++
T Consensus       370 ~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~~~~-~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~  448 (660)
T PLN02861        370 DRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLR-VTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEAR  448 (660)
T ss_pred             HHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHH-HHcCCCeeEecchhhhhhceeecccccCCCCCCccCccCceEEE
Confidence            88999999999999999999999999999876555 455 47999999999987665443322 2468999999999999


Q ss_pred             EEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecC
Q 005874          485 LIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQ  564 (672)
Q Consensus       485 i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~  564 (672)
                      |+|++++++.. .+.++.|||+|+||+++.|||++|+.|++.|     .+|||+|||+|++|+||.|+|+||+||+||++
T Consensus       449 i~d~~~~g~~~-~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f-----~dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~  522 (660)
T PLN02861        449 LESVPEMGYDA-LSDVPRGEICLRGNTLFSGYHKRQDLTEEVL-----IDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLS  522 (660)
T ss_pred             EEEccccCccc-CCCCCceeEEEcCCcccccccCCHHHHHhhh-----hccCcccCceEEECCCCcEEEEeccccceEcC
Confidence            99965554322 2355789999999999999999999999999     57999999999999999999999999999987


Q ss_pred             CceeeccHHHHHHHhcCcccceEEEEecCCCCeEEEEEEcChhHHHHHHHHcCh------------------hh-----h
Q 005874          565 HGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQGI------------------VG-----K  621 (672)
Q Consensus       565 ~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~~~~va~v~~~~~~~~~~~~~~~~------------------~~-----~  621 (672)
                      +|++|+|++||++|.+||.|.+|+|+|.+..++++|+|+++.+.+.+|..+..+                  ..     .
T Consensus       523 ~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~~~~~~A~vv~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  602 (660)
T PLN02861        523 QGEYVAVENLENTYSRCPLIASIWVYGNSFESFLVAVVVPDRQALEDWAANNNKTGDFKSLCKNLKARKYILDELNSTGK  602 (660)
T ss_pred             CCeEEcHHHHHHHHhcCCCeeEEEEEecCCcceeEEEEEcCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999987788999999998877766554321                  11     1


Q ss_pred             hcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHHHHhhhC
Q 005874          622 NARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLYE  672 (672)
Q Consensus       622 ~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~~ly~  672 (672)
                      +..|+.+++++.+.+.+++|+++||++|+++|++|+.+.+.|+++|++||+
T Consensus       603 ~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~I~~lY~  653 (660)
T PLN02861        603 KLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCIDQLYS  653 (660)
T ss_pred             HcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHHHHHHHH
Confidence            236999999999999999999999999999999999999999999999995

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=1.5e-87  Score=757.62  Aligned_cols=602  Identities=33%  Similarity=0.577  Sum_probs=506.8

Q ss_pred             CCCCCccCccCCCccccccccCCCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHH
Q 005874           33 VGGEPGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQA  112 (672)
Q Consensus        33 ~~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el  112 (672)
                      .+++||+....+.++.    ..++..|++++|++.++++|+++|++.+...        ++.      .|+++++||+|+
T Consensus        21 ~~~~~~~~~~~~~~~~----~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~--------~~~------~~~~~~~Ty~el   82 (660)
T PLN02430         21 VGPVYRNLLSKKGFPP----IDSDITTAWDIFSKSVEKYPDNKMLGWRRIV--------DGK------VGPYMWKTYKEV   82 (660)
T ss_pred             CCCccccccccccccC----CCCCCCCHHHHHHHHHHhCCCCceEEEEecC--------CCC------CCCcEEEEHHHH
Confidence            4889999876555321    3367889999999999999999999876321        232      356788999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccch-HH
Q 005874          113 FETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL-KK  191 (672)
Q Consensus       113 ~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-~~  191 (672)
                      .++++++|++|.+.|+++||+|+|+++|++||++++|||+++|+++||++++++++++.+++++++++++|+++... ..
T Consensus        83 ~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~  162 (660)
T PLN02430         83 YEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKEL  162 (660)
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987643 33


Q ss_pred             HHhhhcCCCCccEEEEecCCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEee
Q 005874          192 LVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMT  271 (672)
Q Consensus       192 l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~t  271 (672)
                      +.......+.++.+|.++............ .+...++|+++...+...+.......++|+++|+|||||||.||||++|
T Consensus       163 ~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lt  241 (660)
T PLN02430        163 LEPDCKSAKRLKAIVSFTSVTEEESDKASQ-IGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLT  241 (660)
T ss_pred             HhhhcccCCCceEEEEECCCChHHhhhhhc-CCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEee
Confidence            333334456788888886533211110111 2445678999887665443333445689999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhc----CCCCCCcEEEEecChHhHHHHHHHHHHhHhCcEEee--CCcccccCchhhhhccccccccc
Q 005874          272 HGNVLATVSAVMTIV----PDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY--GTPLTLTDTSSKIKKGTQGDASV  345 (672)
Q Consensus       272 h~~l~~~~~~~~~~~----~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~--~~~~~l~~~~~~~~~~~~~~i~~  345 (672)
                      |+|+++.+......+    ..++++|++++++|++|++++...+.++..|+++++  .++..+.++           +++
T Consensus       242 h~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~-----------l~~  310 (660)
T PLN02430        242 HEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDD-----------LME  310 (660)
T ss_pred             cHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHH-----------HHH
Confidence            999998877654321    246789999999999999999887778999999987  455556665           999


Q ss_pred             ccceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEE
Q 005874          346 LRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFI  425 (672)
Q Consensus       346 ~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i  425 (672)
                      ++||++.++|++|+++.+.+.......+++++.+|+++...|...++.+..  ....++++|.++|++++..+|+++|.+
T Consensus       311 ~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~l~~~~i~~~~G~~lr~~  388 (660)
T PLN02430        311 LKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYS--HKKASPMADFLAFRKVKAKLGGRLRLL  388 (660)
T ss_pred             hCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCC--CCCcchhHHHHHHHHHHHHhCCeEEEE
Confidence            999999999999999999998888888899999999999999988864332  112467899999999999999999999


Q ss_pred             EEcCCCCCHHHHHHHHHHhCCceecccCcccccccccccCCCC-CCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccE
Q 005874          426 LSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDD-SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGE  504 (672)
Q Consensus       426 ~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GE  504 (672)
                      ++||+++++++.++++...+++++++||+||+++..+.....+ ...+++|.|.++++++|+|++++++.+ .+.++.||
T Consensus       389 ~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~-~~~~~~GE  467 (660)
T PLN02430        389 ISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDP-LGEPPRGE  467 (660)
T ss_pred             EECCCCCCHHHHHHHHHhcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCccc-CCCCCcce
Confidence            9999999999988887765678999999999987766654433 346899999999999999977776654 34556899


Q ss_pred             EEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCccc
Q 005874          505 IVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV  584 (672)
Q Consensus       505 i~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V  584 (672)
                      |+|+||+++.|||++|+.|++.|     .+|||+|||+|++|+||.|+|+||+||+||+++|++|+|++||++|.+||.|
T Consensus       468 i~vrg~~v~~GY~~~~e~t~~~~-----~dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V  542 (660)
T PLN02430        468 ICVRGKCLFSGYYKNPELTEEVM-----KDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIV  542 (660)
T ss_pred             EEecCCCccccccCChHHhhhhh-----hccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCe
Confidence            99999999999999999999998     6899999999999999999999999999999889999999999999999999


Q ss_pred             ceEEEEecCCCCeEEEEEEcChhHHHHHHHHcCh---------------------hhh--hcCCCCCcceeEEEEeecCC
Q 005874          585 DNIMMHADPFHSYCVALVVASQPAVEEWAAKQGI---------------------VGK--NARLDKFEIPAKIKLLSYPW  641 (672)
Q Consensus       585 ~~~~V~g~~~~~~~va~v~~~~~~~~~~~~~~~~---------------------~~~--~~~L~~~~~p~~i~~~~~~~  641 (672)
                      .+|+|+|++..++++|+|+++++....|....++                     ...  +++|+.|+++++|.+.+++|
T Consensus       543 ~~~~V~G~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~  622 (660)
T PLN02430        543 EDIWVYGDSFKSMLVAVVVPNEENTNKWAKDNGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPF  622 (660)
T ss_pred             eEEEEEecCCcceEEEEEEcCHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCC
Confidence            9999999876788999999999887766554321                     112  45799999999999999999


Q ss_pred             CCCCCccccccccChHHHHHHHHHHHHhhhC
Q 005874          642 TSEAGLVTAALKIKREAIRKAFADDLARLYE  672 (672)
Q Consensus       642 ~~~~~~~t~~gKi~R~~l~~~~~~~i~~ly~  672 (672)
                      +++||++|+++|++|+.+.+.|+++|++||+
T Consensus       623 ~~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~  653 (660)
T PLN02430        623 DVERDLVTATLKKRRNNLLKYYQVEIDEMYR  653 (660)
T ss_pred             CCcCCcCChhhhhhhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999995

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.7e-87  Score=760.94  Aligned_cols=646  Identities=36%  Similarity=0.590  Sum_probs=520.0

Q ss_pred             CcceEEeeeeeEEEEEEecccccccccccccC------CCCCCccCccCCCccccccccCCCCCCHHHHHHHHHHHcCCC
Q 005874            1 MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVD------VGGEPGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDK   74 (672)
Q Consensus         1 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~   74 (672)
                      |.+|.++.++||.   -+++..+...+.+++.      .+++||+.......-......|++..|++++|.++++++||+
T Consensus         9 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~   85 (700)
T PTZ00216          9 MDKRNSRSEVPDP---DIEEYRRYGPQNVPVPGTETENASAIYRIAGVTDEEHERLRNEWYYGPNFLQRLERICKERGDR   85 (700)
T ss_pred             HHHhhcceeccch---HhhhhhhcCCcceecCCCCCCCCCCcccCcccccchhcccccccCCCCCHHHHHHHHHHhCCCC
Confidence            3578888888887   1333333333333332      356777754332111112224567789999999999999999


Q ss_pred             CceEEeecccccccccc--CCc--ccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHH
Q 005874           75 YLLGTRQLISRETEVAD--NGR--SFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQG  150 (672)
Q Consensus        75 ~a~~~~~~~~~~~~~~~--~g~--~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e~~~~~lA  150 (672)
                      +|++++.......+..+  +|+  .|++...++++++||+|+.++++++|++|.++|+++||+|+|+++|++||+++++|
T Consensus        86 ~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA  165 (700)
T PTZ00216         86 RALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYG  165 (700)
T ss_pred             CeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            99998743211111111  222  34455566889999999999999999999999999999999999999999999999


Q ss_pred             HHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcC--CCCccEEEEecCCCcccccccccCCCeEEE
Q 005874          151 CFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQ--LDTVKHVICMDANIPSAVSSVEQSGRWKIT  228 (672)
Q Consensus       151 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~--~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~  228 (672)
                      |+++|++++|+++.++++++.+++++++++++|++.+....+.+....  .+.. .+++++......     ...+....
T Consensus       166 ~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~-~ii~~~~~~~~~-----~~~~~~~~  239 (700)
T PTZ00216        166 IWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNT-TIIYLDSLPASV-----DTEGCRLV  239 (700)
T ss_pred             HHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhccCCce-EEEEECCCcccc-----ccCCceEE
Confidence            999999999999999999999999999999999998766655444322  2333 455655422111     11345678


Q ss_pred             eHHHHHhccc--CCCCC-CCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhc----CCCCCCcEEEEecCh
Q 005874          229 SFADVQILGR--ENPVD-ADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV----PDLGSKDVYLAYLPL  301 (672)
Q Consensus       229 ~~~~~~~~~~--~~~~~-~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~----~~~~~~d~~l~~~pl  301 (672)
                      +|+++...+.  ....+ .....++++++|+|||||||.||||++||+|+++.+.++...+    ..+.++|++++++|+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl  319 (700)
T PTZ00216        240 AWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPL  319 (700)
T ss_pred             EHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChH
Confidence            9999887652  11111 2344689999999999999999999999999999887766543    124788999999999


Q ss_pred             HhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhHHHHH
Q 005874          302 AHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFD  381 (672)
Q Consensus       302 ~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~  381 (672)
                      +|++++.....++..|+++++.++..+.+.    ......++++++||++.++|++|+++.+.........+.+++.+|+
T Consensus       320 ~H~~~~~~~~~~l~~G~~v~~~~~~~l~~~----~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~  395 (700)
T PTZ00216        320 AHIMEFGVTNIFLARGALIGFGSPRTLTDT----FARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFD  395 (700)
T ss_pred             HHHHHHHHHHHHHHcCCEEEECCHHHhhhh----hccccchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            999998877777899999988777666552    1111223889999999999999999999988888888899999999


Q ss_pred             HHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCcccccccc
Q 005874          382 LAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGG  461 (672)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~  461 (672)
                      +++..++..+.      .+..+++++.++|++++..+|+++|.+++||+++++++.++++..++ +++++||+||+++.+
T Consensus       396 ~a~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~  468 (700)
T PTZ00216        396 HAYQSRLRALK------EGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCG  468 (700)
T ss_pred             HHHHHHHHHHH------cCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccc
Confidence            99999988776      34456789999999999999999999999999999999999988888 999999999998777


Q ss_pred             cccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCc
Q 005874          462 TFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGD  541 (672)
Q Consensus       462 ~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGD  541 (672)
                      +.....+...+++|.|+|+++++|+|.++..  ..+.+++.|||+|+||+++.|||++|+.|++.|+    .+|||+|||
T Consensus       469 ~~~~~~~~~~~svG~p~~g~evkI~d~~~~~--~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~----~dGw~~TGD  542 (700)
T PTZ00216        469 GIQRTGDLEPNAVGQLLKGVEMKLLDTEEYK--HTDTPEPRGEILLRGPFLFKGYYKQEELTREVLD----EDGWFHTGD  542 (700)
T ss_pred             cccCCCCCCCCCcCCcCCCeEEEEeechhhc--cCCCCCCCceEEEcCCcccchhcCChhHhhhhcc----ccCCeeccc
Confidence            7666556667899999999999999944322  1234567899999999999999999999999998    789999999


Q ss_pred             EEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccce--EEEEecCCCCeEEEEEEcChhHHHHHHHHcCh-
Q 005874          542 VGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDN--IMMHADPFHSYCVALVVASQPAVEEWAAKQGI-  618 (672)
Q Consensus       542 lg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~--~~V~g~~~~~~~va~v~~~~~~~~~~~~~~~~-  618 (672)
                      +|++|+||.|+|+||+||+||+++|++|+|++||++|.+||.|.+  ++|++.+++.+++|+|+++.+....|+.+.++ 
T Consensus       543 ig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~~~~l~a~vv~~~~~~~~~~~~~~~~  622 (700)
T PTZ00216        543 VGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPARSYICALVLTDEAKAMAFAKEHGIE  622 (700)
T ss_pred             eEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecCCceEEEEEecCHHHHHHHHHHcCCC
Confidence            999999999999999999999668999999999999999999996  57777777889999999998877766553331 


Q ss_pred             ----------------------hhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHHHHhhhC
Q 005874          619 ----------------------VGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLYE  672 (672)
Q Consensus       619 ----------------------~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~~ly~  672 (672)
                                            ...+++|.+|++|++|.+++++|+++||++|+++|++|++++++|++.|++||+
T Consensus       623 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~  698 (700)
T PTZ00216        623 GEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYADLIKELFA  698 (700)
T ss_pred             CCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCCChhhccchHHHHHHHHHHHHHHhc
Confidence                                  122468999999999999999999999999999999999999999999999995

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=9.1e-77  Score=631.11  Aligned_cols=476  Identities=29%  Similarity=0.374  Sum_probs=403.7

Q ss_pred             EeeHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEE
Q 005874          106 WLTYGQAFETICNFASGLAQLG--HKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVI  183 (672)
Q Consensus       106 ~~Ty~el~~~a~~la~~L~~~g--~~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi  183 (672)
                      .+||+|+.+++.++|.+|.++|  +++||+|++++||+++++.+++||+..|+++.|++|.+.+.++.+.++.++++++|
T Consensus        45 ~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif  124 (537)
T KOG1176|consen   45 ELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIF  124 (537)
T ss_pred             EEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEE
Confidence            8999999999999999999875  89999999999999999999999999999999999999999999999999999999


Q ss_pred             ECccchHHHHhhhcCCCCccEEEEecCCC-cccccccccCCCeEEEe-HHHHHhcccCCCCCCCCCCCCCeEEEEeecCC
Q 005874          184 CGSKELKKLVDLSGQLDTVKHVICMDANI-PSAVSSVEQSGRWKITS-FADVQILGRENPVDADYPVSADVAVIMYTSGS  261 (672)
Q Consensus       184 ~~~~~~~~l~~~~~~~~~l~~ii~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGT  261 (672)
                      ++.+..+.+.+....+.  ..++++.... ......     .....+ +.++...+....  ..+...||++.|.|||||
T Consensus       125 ~d~~~~~~i~~~~~~~~--~~i~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~dd~~~il~SSGT  195 (537)
T KOG1176|consen  125 VDEDFYDKISEATSKLA--LKIIVLTGDEGVISISD-----LVEDLDAFEDLMPEGLPDG--IRPVSEDDTAAILYSSGT  195 (537)
T ss_pred             EcCchHHHHHHHHhhcC--CceEEEecccCcccccc-----ccccccchhhccccCCCcc--cccCCCCCeEEEecCCCC
Confidence            99999998888776655  3444444331 100000     011112 444433332222  445567999999999999


Q ss_pred             CCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEEEecChHhHHHHHHHHHH-hHhCcEEee---CCcccccCchhhhhc
Q 005874          262 TGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLI-AGVGSAIGY---GTPLTLTDTSSKIKK  337 (672)
Q Consensus       262 TG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~-l~~G~~i~~---~~~~~l~~~~~~~~~  337 (672)
                      ||.||||++||+|++++........ .++.+|+.++.+|++|.+|+...+.+ +..|+++++   +++..+++.      
T Consensus       196 Tg~PKgV~lsHr~~~~~~~~~~~~~-~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~------  268 (537)
T KOG1176|consen  196 TGLPKGVVLSHRNLIANTLSIKIGW-ELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDL------  268 (537)
T ss_pred             CCCCceEEEecHHHHHHHHHhhhcc-cCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHH------
Confidence            9999999999999999977766666 77789999999999999999997775 555555555   677777777      


Q ss_pred             ccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHH
Q 005874          338 GTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAI  417 (672)
Q Consensus       338 ~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  417 (672)
                           +++|++|+++++|.++..|.+....                                               ...
T Consensus       269 -----i~kykvt~~~~vP~~~~~l~~~p~~-----------------------------------------------~~~  296 (537)
T KOG1176|consen  269 -----IEKYKVTHLFLVPPVLNMLAKSPIV-----------------------------------------------KKY  296 (537)
T ss_pred             -----HHHhCEEEEEcChHHHHHHhcCCcc-----------------------------------------------Ccc
Confidence                 9999999999999999999874211                                               112


Q ss_pred             cCCceEEEEEcCCCCCHHHHHHHHHHhC-CceecccCcccccccccccCCCCC-CCCccCCCcCCeEEEEEecCCCCccc
Q 005874          418 LGGRIRFILSGGAPLSADTQRFINICLG-APIGQGYGLTETCAGGTFSEVDDS-SVGRVGAPLPCSFIKLIDWPEGGYLT  495 (672)
Q Consensus       418 ~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~v~~~YG~TE~~~~~~~~~~~~~-~~~~~G~p~~~~~v~i~d~~~~~~~~  495 (672)
                      ..+++|.+.+||+++++++.+.+++.++ ..+.++||+||+++.++.+...+. ..+++|.++++.++++.+ +.+..+ 
T Consensus       297 ~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~-e~g~~l-  374 (537)
T KOG1176|consen  297 DLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGRLLPGVRVKVLD-ETGVSL-  374 (537)
T ss_pred             cCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCccccceEEEeeC-CCCCCC-
Confidence            3359999999999999999999999998 889999999999988877766654 789999999988888888 677665 


Q ss_pred             CCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHH
Q 005874          496 SDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVE  575 (672)
Q Consensus       496 ~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE  575 (672)
                        ++++.||||++|+++++|||+||+.|++.|+    .+|||+|||+|++|+||+|+|.||.||+||. +|++|+|.|||
T Consensus       375 --~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~----~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~-~G~qv~P~EiE  447 (537)
T KOG1176|consen  375 --GPNQTGEICVRGPQVMKGYLKNPEATKEAFD----DDGWFHTGDLGYFDEDGYLYIVDRSKDLIKY-GGEQVSPAEIE  447 (537)
T ss_pred             --CCCCceEEEEECcccchhhcCChHHHHhhcc----cCCccccCceEEEcCCCeEEEecchhhheee-CCEEeCHHHHH
Confidence              4788999999999999999999999999997    6699999999999999999999999999997 69999999999


Q ss_pred             HHHhcCcccceEEEEecCCCC---eEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCcccccc
Q 005874          576 AALIVSPYVDNIMMHADPFHS---YCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAAL  652 (672)
Q Consensus       576 ~~l~~~~~V~~~~V~g~~~~~---~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~g  652 (672)
                      ++|.+||.|.||+|+|.+++.   .++|+||.+++...+..  ..++.++++|+.|++|+.++|+++.|      +|++|
T Consensus       448 ~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lte~--di~~~v~k~l~~y~~~~~V~Fvd~lP------Ks~~G  519 (537)
T KOG1176|consen  448 AVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLTEK--DIIEYVRKKLPAYKLPGGVVFVDELP------KTPNG  519 (537)
T ss_pred             HHHHhCCCccEEEEEcccccccCCcceEEEEecCCCcCCHH--HHHHHHHhhCChhhccCeEEEeccCC------CCCcc
Confidence            999999999999999999884   59999999985433322  23378889999999999999999998      99999


Q ss_pred             ccChHHHHHHHHHH
Q 005874          653 KIKREAIRKAFADD  666 (672)
Q Consensus       653 Ki~R~~l~~~~~~~  666 (672)
                      ||+|+.|+++|.+.
T Consensus       520 Ki~R~~lr~~~~~~  533 (537)
T KOG1176|consen  520 KILRRKLRDIAKKL  533 (537)
T ss_pred             hHHHHHHHHHHHhc
Confidence            99999999999874

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=2.2e-76  Score=582.57  Aligned_cols=508  Identities=25%  Similarity=0.333  Sum_probs=435.0

Q ss_pred             CCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 005874           56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA  135 (672)
Q Consensus        56 ~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~  135 (672)
                      ...|+.++++..+++-||+.|+++..          .|.           ++||+|+.+.+.++|.+|.++|+++||+|+
T Consensus        48 ~~~Tigq~l~~~t~~v~dkea~Vf~~----------eg~-----------R~Tf~~~~~ev~slAaGll~lGL~kGDrVg  106 (596)
T KOG1177|consen   48 DSETIGQLLETTTERVPDKEAAVFDH----------EGI-----------RLTFSEFVSEVESLAAGLLSLGLKKGDRVG  106 (596)
T ss_pred             ccccHHHHHHHHhhccCcceEEEEee----------ccc-----------hhhHHHHHHHHHHHHhhHHhhcCCCCCEEE
Confidence            45899999999999999999999843          343           699999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccch-----HHHHhhh-------------c
Q 005874          136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL-----KKLVDLS-------------G  197 (672)
Q Consensus       136 i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~-------------~  197 (672)
                      +..||+.+|+.++|||.++|.+.+++||.+..+++++.|++.+++++|+.+...     +.+.+..             .
T Consensus       107 vwgpN~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~  186 (596)
T KOG1177|consen  107 VWGPNSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSE  186 (596)
T ss_pred             EecCChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCcccccc
Confidence            999999999999999999999999999999999999999999999999987532     3333332             2


Q ss_pred             CCCCccEEEEecCCCcccccccccCCCeEEEeHHHHHhcccCCCCC-----CCCCCCCCeEEEEeecCCCCCCceEEeeh
Q 005874          198 QLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVD-----ADYPVSADVAVIMYTSGSTGLPKGVMMTH  272 (672)
Q Consensus       198 ~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~d~~a~i~~TSGTTG~PKgV~~th  272 (672)
                      .+|.+.++|..+++.+..          ..+.++|+...+......     .....|||.+.|.|||||||.|||+.+||
T Consensus       187 ~lp~lthvi~~~ed~~~~----------Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH  256 (596)
T KOG1177|consen  187 LLPELTHVILADEDHPLP----------GAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSH  256 (596)
T ss_pred             ccccceEEEecCCCCcCC----------CceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeeh
Confidence            367888898888654332          345677877766553221     13456799999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEee----CCcccccCchhhhhccccccccccc
Q 005874          273 GNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY----GTPLTLTDTSSKIKKGTQGDASVLR  347 (672)
Q Consensus       273 ~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~----~~~~~l~~~~~~~~~~~~~~i~~~k  347 (672)
                      -|++++.......+ ++..++++++..|++|.+|... .+++|..|+++++    ++|.+.++.           ++++|
T Consensus       257 ~~~~Nna~~vg~r~-g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqa-----------i~~ek  324 (596)
T KOG1177|consen  257 YNFLNNARAVGARA-GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQA-----------ISNEK  324 (596)
T ss_pred             hhhhhhHHHHHHHh-CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHH-----------HHhhc
Confidence            99999999999888 9999999999999999999665 8889999999999    666666666           99999


Q ss_pred             ceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEE
Q 005874          348 PTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILS  427 (672)
Q Consensus       348 ~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~  427 (672)
                      +|.++++|+++..|++....                                               .+...+++|.++.
T Consensus       325 cT~l~gtPtM~~Dlln~~~~-----------------------------------------------~~~~~s~lr~~vi  357 (596)
T KOG1177|consen  325 CTTLYGTPTMFVDLLNIPQK-----------------------------------------------QQVDLSSLRKGVI  357 (596)
T ss_pred             eEEEecChHHHHHHhcchhh-----------------------------------------------ccCchhhhhhhee
Confidence            99999999999999874322                                               1222358999999


Q ss_pred             cCCCCCHHHHHHHHHHhCCc-eecccCcccccccccccCCCCC---CCCccCCCcCCeEEEEEecCCCCcccCCCCCCcc
Q 005874          428 GGAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEVDDS---SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRG  503 (672)
Q Consensus       428 gG~~l~~~~~~~~~~~~~~~-v~~~YG~TE~~~~~~~~~~~~~---~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~G  503 (672)
                      ||+++|+++++.+...++.. +...||+||+++..+.....+.   +..++|..+++.|.+|+| .++...+   .+..|
T Consensus       358 gGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~---~~~~G  433 (596)
T KOG1177|consen  358 GGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVP---LGTKG  433 (596)
T ss_pred             CCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccc---cCCCc
Confidence            99999999999999876543 6689999999987776655544   458999999999999999 6666654   66779


Q ss_pred             EEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcc
Q 005874          504 EIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPY  583 (672)
Q Consensus       504 Ei~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~  583 (672)
                      |||+||++.+.|||++++.|++...    .|.||+|||+|.+|++|.++|+||.+|+|+ ++|++|+|.|||+.|.+||.
T Consensus       434 el~iRGY~tMl~Ywg~~~kT~eti~----~drW~~TGDi~~m~enG~i~iVGRskdmI~-rGGENVyP~ElE~fL~~hp~  508 (596)
T KOG1177|consen  434 ELLIRGYSTMLGYWGEEEKTKETIG----NDRWYDTGDIAVMDENGTIEIVGRSKDMII-RGGENVYPTELEDFLNKHPL  508 (596)
T ss_pred             eEEEEechhheeecCCcccchhhcc----cccceecCceEEEcCCCcEEEEEcccCeEE-eCCcccChHHHHHHHhhCCC
Confidence            9999999999999999999999998    899999999999999999999999999998 69999999999999999999


Q ss_pred             cceEEEEecCCCC---eEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHH
Q 005874          584 VDNIMMHADPFHS---YCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIR  660 (672)
Q Consensus       584 V~~~~V~g~~~~~---~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~  660 (672)
                      |.++.|+|.+++.   .+||.|-...........+....+++.+|..|.+|+.|+++++.|      +|.+|||+|-++|
T Consensus       509 V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~~~t~E~lKa~Ck~klaHFKiPky~vf~~~FP------lT~tGKIqKFeir  582 (596)
T KOG1177|consen  509 VKEAHVVGVPDERLGEEVCACVRLQEGAEGKTTAETLKAMCKGKLAHFKIPKYFVFVDEFP------LTTTGKIQKFEIR  582 (596)
T ss_pred             eeeEEEEccCCCcccceEEEEEEeeccccccccHHHHHHHHhcccccccCCcEEEEeccCc------ccccccchhHHHH
Confidence            9999999998773   599999888776542222222267778899999999999999966      9999999999999


Q ss_pred             HHHHHHHH
Q 005874          661 KAFADDLA  668 (672)
Q Consensus       661 ~~~~~~i~  668 (672)
                      ++.+..+.
T Consensus       583 ~~~k~~l~  590 (596)
T KOG1177|consen  583 EMSKGHLG  590 (596)
T ss_pred             HHHHhhcc
Confidence            99987653

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=3.1e-72  Score=618.73  Aligned_cols=505  Identities=31%  Similarity=0.442  Sum_probs=415.4

Q ss_pred             CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874           55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV  134 (672)
Q Consensus        55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V  134 (672)
                      ....++.+++.+.++.+|+++|+.+.            +.      .+   .+||+||.++++++|..|++.|+++||+|
T Consensus         8 ~~~~~~~~~l~~~a~~~~~~~a~~~~------------~~------~~---~~Ty~el~~~~~~~A~~L~~~~v~~gdrV   66 (534)
T COG0318           8 TAELTLASLLERAARRNPDRPALIFL------------GR------GG---RLTYRELDRRANRLAAALQALGVKPGDRV   66 (534)
T ss_pred             cccccHHHHHHHHHHhCCCceEEEEc------------CC------Cc---eeeHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence            34578999999999999999999973            33      01   59999999999999999999999999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcc
Q 005874          135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS  214 (672)
Q Consensus       135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~  214 (672)
                      +|+++|++++++++|||+++|++++|++|.+..+++.++++.++++.++++.+..+.+.......+....+.........
T Consensus        67 ail~~N~~e~~~~~~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (534)
T COG0318          67 AILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDR  146 (534)
T ss_pred             EEECCCCHHHHHHHHHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEeccccccc
Confidence            99999999999999999999999999999999999999999999999999998555555554443333222222211100


Q ss_pred             cccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCC--CCCC
Q 005874          215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPD--LGSK  292 (672)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~--~~~~  292 (672)
                      .        .   .+++++...............++++++++|||||||.||||++||+|++++...+...+ .  ++++
T Consensus       147 ~--------~---~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~-~~~~~~~  214 (534)
T COG0318         147 L--------P---ITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL-GGGLTPD  214 (534)
T ss_pred             c--------c---ccHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHh-cccCCCC
Confidence            0        0   23455533222222222226789999999999999999999999999999988888887 6  8999


Q ss_pred             cEEEEecChHhHHHHHHHHHH-hHhCcEEeeCC-----cccccCchhhhhcccccccccccceeeecchHHHHHHHHHHH
Q 005874          293 DVYLAYLPLAHVLELVAENLI-AGVGSAIGYGT-----PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVR  366 (672)
Q Consensus       293 d~~l~~~pl~h~~~~~~~~~~-l~~G~~i~~~~-----~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~  366 (672)
                      |++++.+|++|++|+...+.+ ++.|+++++..     +..+...           +.++++|++.++|+++..+++...
T Consensus       215 d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~-----------i~~~~~t~~~~vPt~~~~ll~~~~  283 (534)
T COG0318         215 DVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWL-----------IEKYKVTVLSGVPTFLRELLDNPE  283 (534)
T ss_pred             ceEEEecChHHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHH-----------HHHhcceEEecchHHHHHHHhCCc
Confidence            999999999999999986555 99999999833     4344444           888889999999999999877432


Q ss_pred             HhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCC-ceEEEEEcCCCCCHHHHHHHHHHhC
Q 005874          367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGG-RIRFILSGGAPLSADTQRFINICLG  445 (672)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~lr~i~~gG~~l~~~~~~~~~~~~~  445 (672)
                      .....                                               .. ++|.+++||+++++++.+.+++.++
T Consensus       284 ~~~~~-----------------------------------------------~~~~lr~~~~gg~~~~~~~~~~~~~~~~  316 (534)
T COG0318         284 KDDDD-----------------------------------------------LSSSLRLVLSGGAPLPPELLERFEERFG  316 (534)
T ss_pred             cCccc-----------------------------------------------cccceEEEEecCCcCCHHHHHHHHHHhC
Confidence            21110                                               01 3999999999999999999999987


Q ss_pred             -CceecccCcccccccccccCCCC--CCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchh
Q 005874          446 -APIGQGYGLTETCAGGTFSEVDD--SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEK  522 (672)
Q Consensus       446 -~~v~~~YG~TE~~~~~~~~~~~~--~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~  522 (672)
                       ..++++||+||+++.++.....+  ...+++|.|+|+++++|+| ++++...   +|+.||||++||+++.|||++|+.
T Consensus       317 ~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd-~~~~~~~---pg~vGei~irgp~v~~GY~~~pe~  392 (534)
T COG0318         317 PIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVD-PDGGEVL---PGEVGEIWVRGPNVMKGYWNRPEA  392 (534)
T ss_pred             CCceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEe-CCCCccC---CCCceEEEEECchhhhhhcCChHH
Confidence             47999999999998777776665  4567889999999999999 5555322   378999999999999999999999


Q ss_pred             hhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEE
Q 005874          523 TKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCV  599 (672)
Q Consensus       523 t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~v  599 (672)
                      |.+.|.    .+|||+|||+|++|+||.++|+||.||+|+. +|++|+|.+||+++.+||.|.+++|+|.+++   +.++
T Consensus       393 t~~~f~----~~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~-gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~  467 (534)
T COG0318         393 TAEAFD----EDGWLRTGDLGYVDEDGYLYIVGRLKDLIIS-GGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVV  467 (534)
T ss_pred             HHHhhc----cCCeeeecceEEEcCCccEEEEeccceEEEe-CCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEE
Confidence            999885    4699999999999999999999999999996 7999999999999999999999999999876   4699


Q ss_pred             EEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874          600 ALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       600 a~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                      |+|+++++.......+....+++.+|+.|.+|+.|.++++.|      +|++||++|+.|++.+.+
T Consensus       468 a~v~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~v~~v~~lP------~t~sGKi~r~~lr~~~~~  527 (534)
T COG0318         468 AVVVLKPGGDAELTAEELRAFLRKRLALYKVPRIVVFVDELP------RTASGKIDRRALREEYRA  527 (534)
T ss_pred             EEEEEcCCCCCCCCHHHHHHHHHhhhhcccCCeEEEEeCCCC------CCCchhhhHHHHHHHHHh
Confidence            999998763100011111166677999999999999999988      999999999999999987

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=1.5e-71  Score=647.91  Aligned_cols=545  Identities=21%  Similarity=0.297  Sum_probs=451.4

Q ss_pred             cccCCCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCC
Q 005874           51 STSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKK  130 (672)
Q Consensus        51 ~~~~~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~  130 (672)
                      .+++++..|+.++|.+.++++|+++|+..+.          +        .|+++++||+|+.++++++|.+|.++|+++
T Consensus       420 ~~~~~~~~Tl~dll~~~a~~~pd~~al~~~~----------~--------~g~~~~lTY~El~~~V~~lAa~L~~lGV~~  481 (1452)
T PTZ00297        420 YNPLAGVRSLGEMWERSVTRHSTFRCLGQTS----------E--------SGESEWLTYGTVDARARELGSGLLALGVRP  481 (1452)
T ss_pred             CCCcccCCCHHHHHHHHHHHCCCCeEEEEec----------c--------CCCceEEEHHHHHHHHHHHHHHHHHcCCCC
Confidence            4455778899999999999999999997531          1        235678999999999999999999999999


Q ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecC
Q 005874          131 EERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDA  210 (672)
Q Consensus       131 g~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~  210 (672)
                      ||+|+|+++|++||+++.+||+++|+++||++++  .+++.+++++++++++|++.+..+.+.+...  +.++.+|+++.
T Consensus       482 GDrVaIls~N~~Ewvia~lA~~~~GaV~VPly~t--~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~--~~Lr~IIv~d~  557 (1452)
T PTZ00297        482 GDVIGVDCEASRNIVILEVACALYGFTTLPLVGK--GSTMRTLIDEHKIKVVFADRNSVAAILTCRS--RKLETVVYTHS  557 (1452)
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHcCCEEEeCCCC--HHHHHHHHHhcCCcEEEEchhHHHHHHhhcc--cCCcEEEEECC
Confidence            9999999999999999999999999999999864  6789999999999999999888877766533  37899999864


Q ss_pred             CCcccccccccCCCeEEEeHHHHHhcccCCCCC-CCCCCCCCeEEEEe---ecCCCCCCceEEeehHHHHHHHHHHHhhc
Q 005874          211 NIPSAVSSVEQSGRWKITSFADVQILGRENPVD-ADYPVSADVAVIMY---TSGSTGLPKGVMMTHGNVLATVSAVMTIV  286 (672)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~a~i~~---TSGTTG~PKgV~~th~~l~~~~~~~~~~~  286 (672)
                      .............++.+++|+++...+...+.+ .....+||++.|+|   ||||||.||||++||+|+++++.......
T Consensus       558 ~~~~~~~~~~~~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~  637 (1452)
T PTZ00297        558 FYDEDDHAVARDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTG  637 (1452)
T ss_pred             CcccccccccccCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhc
Confidence            211000000001245678899999877532222 23347889999996   99999999999999999999988866532


Q ss_pred             --CCCCCCcEEEEecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHH
Q 005874          287 --PDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDG  364 (672)
Q Consensus       287 --~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~  364 (672)
                        +...++|++++++||+|++++...+.+++.|++++++++..++++           +++++||+++++|++|+++.+.
T Consensus       638 ~~~~~~~~D~~Ls~LPLaHI~er~~~~~~l~~G~~I~~~d~~~lled-----------L~~~rPTv~~~VPrv~ekI~~~  706 (1452)
T PTZ00297        638 VLPSSFKKHLMVHFTPFAMLFNRVFVLGLFAHGSAVATVDAAHLQRA-----------FVKFQPTILVAAPSLFSTSRLQ  706 (1452)
T ss_pred             cccCCCCCCEEEEechHHHHHHHHHHHHHHHcCCEEEeCCHHHHHHH-----------HHHHCCEEEEecHHHHHHHHHH
Confidence              245678999999999999998888888999999998888888887           9999999999999999999999


Q ss_pred             HHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCC--CCCHHHHHHHHH
Q 005874          365 VRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGA--PLSADTQRFINI  442 (672)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~--~l~~~~~~~~~~  442 (672)
                      +.++....+++++++|++++..|......     ....++++|+++|+++|+.+|+++|.+++||+  +++..+..    
T Consensus       707 i~~~~~~~~~~~~~lf~~A~~~k~~~~~~-----g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~----  777 (1452)
T PTZ00297        707 LSRANERYSAVYSWLFERAFQLRSRLINI-----HRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE----  777 (1452)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHhc-----CCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC----
Confidence            99988888899999999999988766542     23456799999999999999999999999984  56654444    


Q ss_pred             HhCCceecccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchh
Q 005874          443 CLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEK  522 (672)
Q Consensus       443 ~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~  522 (672)
                        +++++.+||+||+.   +.+......  ..|.|+|++|+||.+.++.++.     +.+|||++++       ++||+.
T Consensus       778 --~i~i~~g~glTE~~---~~~~~~~~~--~~G~PlpgvEvKI~~~~E~~~~-----~~~GEIlvr~-------~kdpe~  838 (1452)
T PTZ00297        778 --HISVCYVPCLREVF---FLPSEGVFC--VDGTPAPSLQVDLEPFDEPSDG-----AGIGQLVLAK-------KGEPRR  838 (1452)
T ss_pred             --CceEEEecceEEee---eecCCCCcc--cCCeecCceEEEEcccccccCC-----CCCCeEEEEE-------CCChHH
Confidence              57788899999953   334444333  2399999999999986665442     2479999964       589999


Q ss_pred             hhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCCCeEEEEE
Q 005874          523 TKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVALV  602 (672)
Q Consensus       523 t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~~~~va~v  602 (672)
                      |++.+      +||+         +||.|+|+||+||+||+++|+||+|+.||++|..+|.|.+++|+|++.+. ++|+|
T Consensus       839 T~e~~------~gW~---------~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k~-lvALV  902 (1452)
T PTZ00297        839 TLPIA------AQWK---------RDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSRP-IIAIV  902 (1452)
T ss_pred             HHHhh------CcCc---------cCCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCCc-eEEEE
Confidence            98743      4675         69999999999999999999999999999999999999999999988555 99999


Q ss_pred             EcChhHHH-HHHHHcCh-----------------------------hhhhcCCCCCcceeEEEEeecCCCCCCCcccccc
Q 005874          603 VASQPAVE-EWAAKQGI-----------------------------VGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAAL  652 (672)
Q Consensus       603 ~~~~~~~~-~~~~~~~~-----------------------------~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~g  652 (672)
                      +|+.+... .|+.+.++                             ....+++..+++++.+.+++++|++++|++||++
T Consensus       903 vpd~e~l~~~wa~~~gi~~~~~~~~~~~~~el~~~~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTl  982 (1452)
T PTZ00297        903 SPNRDTVEFEWRQSHCMGEGGGPARQLGWTELVAYASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYG  982 (1452)
T ss_pred             EeCHHHHHHHHHHHcCCCccccccccCCHHHHHHhHHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhh
Confidence            99998887 77664432                             1223457889999999999999999999999999


Q ss_pred             ccChHHHHHHHHHHHHhhhC
Q 005874          653 KIKREAIRKAFADDLARLYE  672 (672)
Q Consensus       653 Ki~R~~l~~~~~~~i~~ly~  672 (672)
                      |++|+.+.++|+++|++||+
T Consensus       983 KlKR~~I~~kY~~~Ie~LY~ 1002 (1452)
T PTZ00297        983 KIRRDAVHSYFSSVIERFYS 1002 (1452)
T ss_pred             hhhHHHHHHHHHHHHHHHhc
Confidence            99999999999999999995

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=2.4e-70  Score=616.44  Aligned_cols=523  Identities=22%  Similarity=0.270  Sum_probs=408.1

Q ss_pred             CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874           55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV  134 (672)
Q Consensus        55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V  134 (672)
                      +...|+.++|+++++.+|+++|+...+            .      .++++++||+||.++++++|++|.+.|+++|++|
T Consensus        36 ~~~~~l~~~l~~~a~~~p~~~a~~~~~------------~------~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V   97 (614)
T PRK08180         36 DYPRRLTDRLVHWAQEAPDRVFLAERG------------A------DGGWRRLTYAEALERVRAIAQALLDRGLSAERPL   97 (614)
T ss_pred             CcCccHHHHHHHHHHHCCCCceeeecc------------C------CCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence            345789999999999999999998631            1      2345689999999999999999999999999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCC-----HHHHHHHHhcccceEEEECccc--hHHHHhhhcCCCCccEEEE
Q 005874          135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLG-----EEALCYSLNETEVTTVICGSKE--LKKLVDLSGQLDTVKHVIC  207 (672)
Q Consensus       135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~-----~~~l~~~l~~~~~~~vi~~~~~--~~~l~~~~~~~~~l~~ii~  207 (672)
                      +++++|+++|++++|||+++|++++|+++.++     .+++.+++++++++++|+++..  ...+.....  ... .++.
T Consensus        98 ai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~--~~~-~~i~  174 (614)
T PRK08180         98 MILSGNSIEHALLALAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP--ADV-EVVA  174 (614)
T ss_pred             EEecCCCHHHHHHHHHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc--CCc-eEEE
Confidence            99999999999999999999999999999988     7999999999999999998642  222222111  112 2333


Q ss_pred             ecCCCcccccccccCCCeEEEeHHHHHhcccCCC--CCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhh
Q 005874          208 MDANIPSAVSSVEQSGRWKITSFADVQILGRENP--VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI  285 (672)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~  285 (672)
                      .+....          .....+|+++........  .......++++++|+|||||||.||||++||+|+++.+......
T Consensus       175 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~  244 (614)
T PRK08180        175 VRGAVP----------GRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQT  244 (614)
T ss_pred             ecCCCC----------CcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhh
Confidence            222110          011245666554321111  11123457899999999999999999999999999988877766


Q ss_pred             cCCCC--CCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHH
Q 005874          286 VPDLG--SKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVR  362 (672)
Q Consensus       286 ~~~~~--~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~  362 (672)
                      + .+.  .+|++++++|++|.+++.. .+.+++.|+++++.+.......    ...++..++++++|+++++|.+|..|+
T Consensus       245 ~-~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~----~~~~l~~i~~~~~t~~~~vP~~~~~l~  319 (614)
T PRK08180        245 F-PFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGG----FDETLRNLREISPTVYFNVPKGWEMLV  319 (614)
T ss_pred             c-cccCCCCcEEEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchh----HHHHHHHHHHhCCcEEechHHHHHHHH
Confidence            6 443  5689999999999999765 5678999999998321100000    111223389999999999999999998


Q ss_pred             HHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHH
Q 005874          363 DGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINI  442 (672)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~  442 (672)
                      +......                                           .....++++||.+++||+++++++.+.+++
T Consensus       320 ~~~~~~~-------------------------------------------~~~~~~~~~lr~v~~gGa~l~~~~~~~~~~  356 (614)
T PRK08180        320 PALERDA-------------------------------------------ALRRRFFSRLKLLFYAGAALSQDVWDRLDR  356 (614)
T ss_pred             HHHHhch-------------------------------------------hhhhhhccceeEEEEccCCCCHHHHHHHHH
Confidence            7532210                                           111223458999999999999999999887


Q ss_pred             H----hC--CceecccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccc
Q 005874          443 C----LG--APIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGY  516 (672)
Q Consensus       443 ~----~~--~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY  516 (672)
                      .    ++  ++++++||+||+++.++.........+++|.|+|+++++|+|           .+..|||+|+|++++.||
T Consensus       357 ~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~d-----------~~~~GEi~vrg~~v~~GY  425 (614)
T PRK08180        357 VAEATCGERIRMMTGLGMTETAPSATFTTGPLSRAGNIGLPAPGCEVKLVP-----------VGGKLEVRVKGPNVTPGY  425 (614)
T ss_pred             HHHhhcCCCceeeeeecccccCCceEecccccCCCCcccCccCCcEEEEec-----------CCCCcEEEEecCccchhh
Confidence            5    33  679999999999877665544445678999999999999998           234699999999999999


Q ss_pred             cCCchhhhhhcccCCCCCceEecCcEEEE----ccCceEEEEecCCCeEecCCceeec--cHHHHHHHhcCcccceEEEE
Q 005874          517 FKNEEKTKEVYKVDDKGMRWFYTGDVGQV----HADGCLEIIDRKKDIVKLQHGEYVS--LGKVEAALIVSPYVDNIMMH  590 (672)
Q Consensus       517 ~~~~~~t~~~~~~~~~~~gw~~TGDlg~~----~~dG~l~i~gR~~d~ik~~~G~~v~--p~~iE~~l~~~~~V~~~~V~  590 (672)
                      |++|+.|++.|+    .+|||+|||+|++    |+||.|+|+||+||+|++++|++|+  |.|+|.++.+||.|.+|+|+
T Consensus       426 ~~~p~~t~~~~~----~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~  501 (614)
T PRK08180        426 WRAPELTAEAFD----EEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVIT  501 (614)
T ss_pred             cCChhHhHhhcc----cCCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEE
Confidence            999999999997    7899999999999    4689999999999999988899776  77888999999999999999


Q ss_pred             ecCCCCeEEEEEEcChhHHHHHHHH-------------cChhhhhcCCCC--------CcceeEEEEeecCCCCCCCccc
Q 005874          591 ADPFHSYCVALVVASQPAVEEWAAK-------------QGIVGKNARLDK--------FEIPAKIKLLSYPWTSEAGLVT  649 (672)
Q Consensus       591 g~~~~~~~va~v~~~~~~~~~~~~~-------------~~~~~~~~~L~~--------~~~p~~i~~~~~~~~~~~~~~t  649 (672)
                      |.+++ .++|+|+++++....+...             ....++.+.|..        +++|+++.+++++|...+|.+|
T Consensus       502 g~~~~-~~~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~p~~~~gk~t  580 (614)
T PRK08180        502 GHDRD-EIGLLVFPNLDACRRLAGLLADASLAEVLAHPAVRAAFRERLARLNAQATGSSTRVARALLLDEPPSLDAGEIT  580 (614)
T ss_pred             cCCCC-ceEEEEEcCHHHHHHHHhhcccCCHHHHhcCHHHHHHHHHHHHHHHhhccccHhheeEEEEecCCCCCccCccC
Confidence            98854 5889999988753322110             011223333333        3499999999999999999999


Q ss_pred             cccccChHHHHHHHHHHHHhhhC
Q 005874          650 AALKIKREAIRKAFADDLARLYE  672 (672)
Q Consensus       650 ~~gKi~R~~l~~~~~~~i~~ly~  672 (672)
                      ++||++|+++.+.|+++|++||+
T Consensus       581 ~~~~~~R~~~~~~y~~~i~~lY~  603 (614)
T PRK08180        581 DKGYINQRAVLARRAALVEALYA  603 (614)
T ss_pred             ccccccHHHHHHHhHHHHHHHhC
Confidence            99999999999999999999995

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=3.1e-70  Score=577.75  Aligned_cols=492  Identities=23%  Similarity=0.310  Sum_probs=400.5

Q ss_pred             HHHHHHH-HcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCC
Q 005874           63 LFEQSCK-EHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQ-LGHKKEERVAIFADT  140 (672)
Q Consensus        63 ~~~~~a~-~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~-~g~~~g~~V~i~~~n  140 (672)
                      .+++... ..+|+.|+.+..            +      .+..+.+||+||.+.++++|+.|++ .|+ +||+|+|++|+
T Consensus        14 ~~dr~~~~~~~~~~aii~~~------------e------~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~   74 (528)
T COG0365          14 ALDRHLEADRPDDTAIIFDG------------E------DGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPN   74 (528)
T ss_pred             hhhhhhhccCCCceEEEEEc------------C------CCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCC
Confidence            3555544 347899999852            2      1122689999999999999999987 578 99999999999


Q ss_pred             CHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhh--cCCC-CccEEEEecCCCccccc
Q 005874          141 RAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLS--GQLD-TVKHVICMDANIPSAVS  217 (672)
Q Consensus       141 s~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~--~~~~-~l~~ii~~~~~~~~~~~  217 (672)
                      .+|.++++|||+++|++.+|+.+.++++.+.+.+++++++++|+++......+...  .... .+..++.....      
T Consensus        75 ~pe~~~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~------  148 (528)
T COG0365          75 SPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRL------  148 (528)
T ss_pred             CHHHHHHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEeccc------
Confidence            99999999999999999999999999999999999999999999887654333211  1000 00002222111      


Q ss_pred             ccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEEE
Q 005874          218 SVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA  297 (672)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~  297 (672)
                            +   +.|.++....... .++.....+|+++|+|||||||+||||+++|..++............+.++|++.+
T Consensus       149 ------~---~~~~~~~~~~~~~-~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~  218 (528)
T COG0365         149 ------G---LWYDEAVEKASEK-FEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWN  218 (528)
T ss_pred             ------c---ccHHHHhhccCCC-CCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEe
Confidence                  1   5677766554332 23344788999999999999999999999999877766555543227889999999


Q ss_pred             ecChHhHHHHHH-HHHHhHhCcEEee--CC----cccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhh
Q 005874          298 YLPLAHVLELVA-ENLIAGVGSAIGY--GT----PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD  370 (672)
Q Consensus       298 ~~pl~h~~~~~~-~~~~l~~G~~i~~--~~----~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~  370 (672)
                      ..++.|+++... .+.+|..|+++++  +.    |..+++.           ++++++|++++.|+.++.|.+...    
T Consensus       219 ~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~-----------ie~~~vt~~~tsPT~~R~l~~~g~----  283 (528)
T COG0365         219 SSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEA-----------LEKYKVTIFGTSPTFLRRLMKLGL----  283 (528)
T ss_pred             CCCchhhhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHH-----------HHHhCCceEeeCHHHHHHHHhcCC----
Confidence            999999999988 7889999999988  33    3345555           999999999999999999877321    


Q ss_pred             hcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceec
Q 005874          371 AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQ  450 (672)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~  450 (672)
                                                                 .++.++++||.+.+.||||++++.+++.+.+|+++.+
T Consensus       284 -------------------------------------------~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d  320 (528)
T COG0365         284 -------------------------------------------GEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILD  320 (528)
T ss_pred             -------------------------------------------cccccchhheeeeccCCCCCHHHHHHHHHHhCCCEec
Confidence                                                       2233456999999999999999999999999999999


Q ss_pred             ccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccC--cccccccCCchhhhhhcc
Q 005874          451 GYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP--NVTVGYFKNEEKTKEVYK  528 (672)
Q Consensus       451 ~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~--~v~~gY~~~~~~t~~~~~  528 (672)
                      .||+||+++......+ +...++.|.|+||+++.++| ++++.+   ++++ |+|+++.|  ++++|||+||+.+.+.+.
T Consensus       321 ~~gqTEtg~~~~~~~~-~~~~g~~g~p~pG~~~~vvd-d~g~~~---~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~  394 (528)
T COG0365         321 IYGQTETGMGFIAGRP-PVKNGSSGLPLPGYAVRRVD-DEGNPV---PPGV-GELVVRLPWPGMALTYWNDPERYKEAYF  394 (528)
T ss_pred             cccccccCccccCCCC-CcCCCCCCCCCCCceeEEEC-CCCCcC---CCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHh
Confidence            9999999955444434 55566669999999999999 666654   4677 99999997  899999999999999885


Q ss_pred             cCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCCC---eEEEEEEcC
Q 005874          529 VDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHS---YCVALVVAS  605 (672)
Q Consensus       529 ~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~~---~~va~v~~~  605 (672)
                          +. ||.|||.+++|+||+++|.||.||+||++ |.+|.|.|||++|.+||.|.||+|+|.+++.   .++|||+++
T Consensus       395 ----~~-~y~tGD~~~~DedGy~~i~GR~DDvI~vs-G~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~  468 (528)
T COG0365         395 ----GR-WYRTGDWAERDEDGYFWLHGRSDDVIKVS-GKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLA  468 (528)
T ss_pred             ----hc-eeecCceeEEccCCCEEEEeeccceEecc-CeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEec
Confidence                43 99999999999999999999999999985 9999999999999999999999999998763   499999999


Q ss_pred             hhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874          606 QPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       606 ~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                      ++...+...+....++++.+.++..|+.|.+++++|      +|.+|||.|+.||+.+.+
T Consensus       469 ~g~~~~~L~~ei~~~vr~~~~~~~~p~~i~fv~~LP------kT~sGKI~R~~lr~~~~~  522 (528)
T COG0365         469 AGVEPNELAEEIRRHVARNIGPHAIPRKIRFVDELP------KTASGKIQRRLLRKILHK  522 (528)
T ss_pred             CCCChHHHHHHHHHHHHhccCcccCCceEEEecCCC------CCCcccHHHHHHHHHHhh
Confidence            876544233233356667777799999999999998      999999999999998873

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.2e-69  Score=608.45  Aligned_cols=526  Identities=23%  Similarity=0.286  Sum_probs=409.0

Q ss_pred             CCCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCE
Q 005874           54 WEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEER  133 (672)
Q Consensus        54 ~~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~  133 (672)
                      .+...|+.++|+++++++||++|+.+.           ++.      .+.++.+||+||.++++++|++|.+.|+++||+
T Consensus        45 ~~~~~~l~~~l~~~a~~~pd~~a~~~~-----------~~~------~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~  107 (624)
T PRK12582         45 GPYPRSIPHLLAKWAAEAPDRPWLAQR-----------EPG------HGQWRKVTYGEAKRAVDALAQALLDLGLDPGRP  107 (624)
T ss_pred             CCcccCHHHHHHHHHHHCCCchheecc-----------cCC------CCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence            356789999999999999999999863           111      134568999999999999999999999999999


Q ss_pred             EEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCH-----HHHHHHHhcccceEEEECccc-hHHHHhhhcCCCCccEEEE
Q 005874          134 VAIFADTRAEWFVALQGCFRRNVTVVTIYASLGE-----EALCYSLNETEVTTVICGSKE-LKKLVDLSGQLDTVKHVIC  207 (672)
Q Consensus       134 V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~-----~~l~~~l~~~~~~~vi~~~~~-~~~l~~~~~~~~~l~~ii~  207 (672)
                      |+++++|+++|++++|||+++|++++|+++.++.     +++.++++.++++++|+++.. .......... ..++ ++.
T Consensus       108 V~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~-~i~  185 (624)
T PRK12582        108 VMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDL-LDVT-VVH  185 (624)
T ss_pred             EEEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhh-cCce-EEE
Confidence            9999999999999999999999999999999875     899999999999999998642 2211111111 1222 233


Q ss_pred             ecCCCcccccccccCCCeEEEeHHHHHhcccCCCC--CCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhh
Q 005874          208 MDANIPSAVSSVEQSGRWKITSFADVQILGRENPV--DADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI  285 (672)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~  285 (672)
                      ++....          .....++.++.........  ......++++++|+|||||||.||||++||+|+++........
T Consensus       186 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~  255 (624)
T PRK12582        186 VTGPGE----------GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQL  255 (624)
T ss_pred             EcCCCc----------ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHh
Confidence            322110          1122345565543221111  1123457899999999999999999999999999887766544


Q ss_pred             cCCCCC---CcEEEEecChHhHHHHHH-HHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHH
Q 005874          286 VPDLGS---KDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRV  361 (672)
Q Consensus       286 ~~~~~~---~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l  361 (672)
                      + ....   ++++++++|++|++++.. .+.++..|+++++.+.......    ...++..++++++|+++++|.++..|
T Consensus       256 ~-~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~----~~~~~~~i~~~~~t~~~~vP~~~~~l  330 (624)
T PRK12582        256 R-PREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGM----FEETIRNLREISPTVYGNVPAGYAML  330 (624)
T ss_pred             c-cccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccch----HHHHHHHHHhcCCeEEeccCHHHHHH
Confidence            4 3333   589999999999999876 4567899999988332111111    11122338899999999999999988


Q ss_pred             HHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHH
Q 005874          362 RDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFIN  441 (672)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~  441 (672)
                      .+......                                           ..+..++++||.+++||+++++++.++++
T Consensus       331 ~~~~~~~~-------------------------------------------~~~~~~~~slr~i~~gGa~l~~~~~~~~~  367 (624)
T PRK12582        331 AEAMEKDD-------------------------------------------ALRRSFFKNLRLMAYGGATLSDDLYERMQ  367 (624)
T ss_pred             HHHHhhCH-------------------------------------------HHHHHHhhheeEEEecCCCCCHHHHHHHH
Confidence            76432110                                           01112234899999999999999999998


Q ss_pred             HHh------CCceecccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCccccc
Q 005874          442 ICL------GAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVG  515 (672)
Q Consensus       442 ~~~------~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~g  515 (672)
                      +.+      +++++++||+||++..+..........+++|.|+|+++++|++           .|+.|||+|+|++++.|
T Consensus       368 ~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~~-----------~G~~GEl~vrg~~v~~G  436 (624)
T PRK12582        368 ALAVRTTGHRIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLPGVELKLAP-----------VGDKYEVRVKGPNVTPG  436 (624)
T ss_pred             HHHHhhcCCCceEEeccccccccceeecccCCCCCCCCCCcCCCCcEEEEcc-----------CCCceEEEEECCccccc
Confidence            863      3679999999999876553333345568999999999999976           46789999999999999


Q ss_pred             ccCCchhhhhhcccCCCCCceEecCcEEEE-c---cCceEEEEecCCCeEecCCceeeccHHHH--HHHhcCcccceEEE
Q 005874          516 YFKNEEKTKEVYKVDDKGMRWFYTGDVGQV-H---ADGCLEIIDRKKDIVKLQHGEYVSLGKVE--AALIVSPYVDNIMM  589 (672)
Q Consensus       516 Y~~~~~~t~~~~~~~~~~~gw~~TGDlg~~-~---~dG~l~i~gR~~d~ik~~~G~~v~p~~iE--~~l~~~~~V~~~~V  589 (672)
                      ||++|+.|++.|+    .+|||+|||+|++ |   +||.|+|+||+||+|++++|++|+|.+||  .++.+||.|.+|+|
T Consensus       437 Y~~~p~~t~~~f~----~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~V  512 (624)
T PRK12582        437 YHKDPELTAAAFD----EEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVV  512 (624)
T ss_pred             ccCCccchhhhcC----ccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEE
Confidence            9999999999997    7899999999998 4   46999999999999999899999999885  67799999999999


Q ss_pred             EecCCCCeEEEEEEcChhHHHHHHHH-------------------cChhhhhcCCCCCc-ceeEEEEeecCCCCCCCccc
Q 005874          590 HADPFHSYCVALVVASQPAVEEWAAK-------------------QGIVGKNARLDKFE-IPAKIKLLSYPWTSEAGLVT  649 (672)
Q Consensus       590 ~g~~~~~~~va~v~~~~~~~~~~~~~-------------------~~~~~~~~~L~~~~-~p~~i~~~~~~~~~~~~~~t  649 (672)
                      +|.+ +.++.++|+|+......+...                   ..+...++.++.+. +|+.+.+++++|+.++|.+|
T Consensus       513 vG~~-~~~~g~lv~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t  591 (624)
T PRK12582        513 AGQD-RAFIGLLAWPNPAACRQLAGDPDAAPEDVVKHPAVLAILREGLSAHNAEAGGSSSRIARALLMTEPPSIDAGEIT  591 (624)
T ss_pred             EcCC-CCcEEEEEecCHHHHHHHHhcCCCCHHHHhcCHHHHHHHHHHHHHHHhhcCCChhheEEEEEeCCCCCccCCcCC
Confidence            9986 556888888877653222111                   11244456788888 99999999999999999999


Q ss_pred             cccccChHHHHHHHHHHHHhhhC
Q 005874          650 AALKIKREAIRKAFADDLARLYE  672 (672)
Q Consensus       650 ~~gKi~R~~l~~~~~~~i~~ly~  672 (672)
                      ++||++|+.+.+.|+++||+||+
T Consensus       592 ~~~~~~R~~~~~~y~~~i~~ly~  614 (624)
T PRK12582        592 DKGYINQRAVLERRAALVERLYA  614 (624)
T ss_pred             ccccccHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999995

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=3.6e-68  Score=593.76  Aligned_cols=510  Identities=23%  Similarity=0.262  Sum_probs=402.6

Q ss_pred             CCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 005874           56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA  135 (672)
Q Consensus        56 ~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~  135 (672)
                      ...|+.++|++.++++|+++|+..            +++           .+||+||.+++.++|++|.++|+++||+|+
T Consensus         5 ~~~~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~   61 (563)
T PLN02860          5 SQAHICQCLTRLATLRGNAVVTIS------------GNR-----------RRTGHEFVDGVLSLAAGLLRLGLRNGDVVA   61 (563)
T ss_pred             hhhHHHHHHHHHHHhcCCceEEec------------CCc-----------eeeHHHHHHHHHHHHHHHHHhCCCCCCEEE
Confidence            346899999999999999999974            333           699999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhh-cCCCCccEEEEecCCCcc
Q 005874          136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLS-GQLDTVKHVICMDANIPS  214 (672)
Q Consensus       136 i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~-~~~~~l~~ii~~~~~~~~  214 (672)
                      ++++|+++++++++||+++|++++|+++.++.+++.++++++++++++++.+......... ..++.++.++.+++....
T Consensus        62 v~~~n~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  141 (563)
T PLN02860         62 IAALNSDLYLEWLLAVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSS  141 (563)
T ss_pred             EEcCCCHHHHHHHHHHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccc
Confidence            9999999999999999999999999999999999999999999999999876543333321 234555555554432211


Q ss_pred             cccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcE
Q 005874          215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV  294 (672)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~  294 (672)
                      ....     .......+++...............++++++++|||||||.||||+++|++++.........+ .++++|+
T Consensus       142 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-~~~~~d~  215 (563)
T PLN02860        142 VFIF-----LNSFLTTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIV-GYGEDDV  215 (563)
T ss_pred             cccc-----hhhccccchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhc-CCCCCCE
Confidence            0000     001111222221111111111234578999999999999999999999999998777666666 8899999


Q ss_pred             EEEecChHhHHHHHHHHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhh
Q 005874          295 YLAYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDA  371 (672)
Q Consensus       295 ~l~~~pl~h~~~~~~~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~  371 (672)
                      +++.+|++|++++...+.++..|+++++   +++..+.+.           ++++++|++.++|.++..|.+......  
T Consensus       216 ~l~~~pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~~~~~~~--  282 (563)
T PLN02860        216 YLHTAPLCHIGGLSSALAMLMVGACHVLLPKFDAKAALQA-----------IKQHNVTSMITVPAMMADLISLTRKSM--  282 (563)
T ss_pred             EEEecCchhhccHHHHHHHHHcCceEEecCCCCHHHHHHH-----------HHHhCCeeEEeChHHHHHHHHhhhhhh--
Confidence            9999999999998888889999999988   444455544           999999999999999999876431110  


Q ss_pred             cCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCceec
Q 005874          372 KGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQ  450 (672)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~  450 (672)
                                                                 .....+++|.+++||+++++++.+.+++.+ ++++++
T Consensus       283 -------------------------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~  319 (563)
T PLN02860        283 -------------------------------------------TWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFS  319 (563)
T ss_pred             -------------------------------------------ccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceec
Confidence                                                       001124899999999999999999999988 789999


Q ss_pred             ccCcccccccccccCCCC-----------------------CCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEE
Q 005874          451 GYGLTETCAGGTFSEVDD-----------------------SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVI  507 (672)
Q Consensus       451 ~YG~TE~~~~~~~~~~~~-----------------------~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v  507 (672)
                      .||+||+++.++.....+                       ....++|.|+|+++++|++ ++        +++.|||++
T Consensus       320 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~-~~--------~g~~Gel~v  390 (563)
T PLN02860        320 AYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGL-DE--------SSRVGRILT  390 (563)
T ss_pred             CCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEec-CC--------CCceeEEEE
Confidence            999999976554332211                       1123689999999999999 32        467899999


Q ss_pred             ccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceE
Q 005874          508 AGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNI  587 (672)
Q Consensus       508 ~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~  587 (672)
                      +|++++.|||++|+.|++.|.    .+|||+|||+|++|+||.++++||++|+||. +|++|+|.+||+++.+||+|.++
T Consensus       391 ~g~~~~~GY~~~~~~t~~~~~----~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~  465 (563)
T PLN02860        391 RGPHVMLGYWGQNSETASVLS----NDGWLDTGDIGWIDKAGNLWLIGRSNDRIKT-GGENVYPEEVEAVLSQHPGVASV  465 (563)
T ss_pred             ecCcccccccCCccccchhcc----CCCeEEccceEEEcCCCCEEEeecccceeEE-CCEEccHHHHHHHHHhCCCccee
Confidence            999999999999999999887    7899999999999999999999999999997 79999999999999999999999


Q ss_pred             EEEecCCC---CeEEEEEEcChhHH------------HHHHHHcChhhhhc-CCCCCcceeEEEEe-ecCCCCCCCcccc
Q 005874          588 MMHADPFH---SYCVALVVASQPAV------------EEWAAKQGIVGKNA-RLDKFEIPAKIKLL-SYPWTSEAGLVTA  650 (672)
Q Consensus       588 ~V~g~~~~---~~~va~v~~~~~~~------------~~~~~~~~~~~~~~-~L~~~~~p~~i~~~-~~~~~~~~~~~t~  650 (672)
                      +|++.+++   +.++|+|+++++..            .....+....++.+ +|+.|++|+.++++ +..|      +|+
T Consensus       466 ~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~lP------~t~  539 (563)
T PLN02860        466 VVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIPKLFVQWRKPFP------LTT  539 (563)
T ss_pred             EEEEEecCcCCceEEEEEEECCccccccccchhhcccccccHHHHHHHHhhCcccccccceEEEEEecCCC------CCc
Confidence            99997655   46999999876421            00001111134444 69999999999865 4465      999


Q ss_pred             ccccChHHHHHHHHHHHHhh
Q 005874          651 ALKIKREAIRKAFADDLARL  670 (672)
Q Consensus       651 ~gKi~R~~l~~~~~~~i~~l  670 (672)
                      +||++|++|++++.+.+..+
T Consensus       540 ~GKi~r~~L~~~~~~~~~~~  559 (563)
T PLN02860        540 TGKIRRDEVRREVLSHLQSL  559 (563)
T ss_pred             ccchhHHHHHHHHHHHHhcc
Confidence            99999999999998877654

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=1.4e-67  Score=595.05  Aligned_cols=530  Identities=23%  Similarity=0.275  Sum_probs=417.1

Q ss_pred             CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874           57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI  136 (672)
Q Consensus        57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i  136 (672)
                      ..|++++|++.++++|+++|+.+...         ++.      ....+.+||+||.+++.++|+.|+++|+++|++|++
T Consensus        24 ~~t~~~~l~~~a~~~p~~~Al~~~~~---------~~~------~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i   88 (632)
T PRK07529         24 PASTYELLSRAAARHPDAPALSFLLD---------ADP------LDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAF   88 (632)
T ss_pred             CCCHHHHHHHHHHHCCCCceEEeecc---------cCC------CCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            36899999999999999999987421         111      123458999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccc-----hHHHHhhhcCCCCccEEEEecCC
Q 005874          137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKE-----LKKLVDLSGQLDTVKHVICMDAN  211 (672)
Q Consensus       137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~l~~~~~~~~~l~~ii~~~~~  211 (672)
                      +++|++++++++|||+++| +++|+++.++++++.+++++++++++|+++..     .+.+.......+.++.++.++..
T Consensus        89 ~~~n~~e~~~~~lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  167 (632)
T PRK07529         89 LLPNLPETHFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLA  167 (632)
T ss_pred             ECCCCHHHHHHHHHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCc
Confidence            9999999999999999999 56999999999999999999999999997643     34555555667778887776543


Q ss_pred             Cccc--cccc----ccCCCeEEEeHHHHHhcccCCCC-CCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHh
Q 005874          212 IPSA--VSSV----EQSGRWKITSFADVQILGRENPV-DADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT  284 (672)
Q Consensus       212 ~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~  284 (672)
                      ....  ....    ....+..+.+|.+.......... ......+|++++++|||||||.||+|++||+++++.......
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~  247 (632)
T PRK07529        168 RYLPGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGAL  247 (632)
T ss_pred             ccccccccccccccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHH
Confidence            2100  0000    00012234566665544332221 123346799999999999999999999999999998877776


Q ss_pred             hcCCCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHH
Q 005874          285 IVPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRD  363 (672)
Q Consensus       285 ~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~  363 (672)
                      .+ .+.++|++++.+|++|+++... .+.++..|+++++.++..+.+.  .....+...++++++|++.++|+++..|.+
T Consensus       248 ~~-~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~--~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~  324 (632)
T PRK07529        248 LL-GLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGP--GVIANFWKIVERYRINFLSGVPTVYAALLQ  324 (632)
T ss_pred             hc-CCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcc--hHHHHHHHHHHHhCCeEEEeHHHHHHHHHh
Confidence            66 7889999999999999999876 6778999999999665433221  011223344899999999999999998875


Q ss_pred             HHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHH
Q 005874          364 GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC  443 (672)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~  443 (672)
                      ....                                                ....++||.+++||+++++++.+.+++.
T Consensus       325 ~~~~------------------------------------------------~~~~~slr~v~~gg~~l~~~l~~~~~~~  356 (632)
T PRK07529        325 VPVD------------------------------------------------GHDISSLRYALCGAAPLPVEVFRRFEAA  356 (632)
T ss_pred             Cccc------------------------------------------------CCCccceEEEEEcCCCCCHHHHHHHHHH
Confidence            3110                                                0112489999999999999999999999


Q ss_pred             hCCceecccCcccccccccccCCC-CCCCCccCCCcCCeEEEEEec-CCCCcccCCCCCCccEEEEccCcccccccCCch
Q 005874          444 LGAPIGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDW-PEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEE  521 (672)
Q Consensus       444 ~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~~G~p~~~~~v~i~d~-~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~  521 (672)
                      ++++++++||+||++.+++..... ....+++|.|+|+++++|+.. +++.+...+++|+.|||+|+||+++.||++++ 
T Consensus       357 ~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~-  435 (632)
T PRK07529        357 TGVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAA-  435 (632)
T ss_pred             hCCcEeeeecccccCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCc-
Confidence            999999999999998776655433 235689999999999999753 34433334678999999999999999999765 


Q ss_pred             hhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeE
Q 005874          522 KTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYC  598 (672)
Q Consensus       522 ~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~  598 (672)
                      .+...|.    .+|||+|||+|++++||.+++.||+||+||. +|++|+|.+||++|.+||+|.+|+|++.+++   +.+
T Consensus       436 ~~~~~~~----~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~-~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~  510 (632)
T PRK07529        436 HNKGLWL----EDGWLNTGDLGRIDADGYFWLTGRAKDLIIR-GGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELP  510 (632)
T ss_pred             ccccccc----CCCceEcCcEEEEcCCceEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCcee
Confidence            4556665    7899999999999999999999999999996 7999999999999999999999999998765   458


Q ss_pred             EEEEEcChhHHHHHHHHcChhhhhcCCC-CCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHHH
Q 005874          599 VALVVASQPAVEEWAAKQGIVGKNARLD-KFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDL  667 (672)
Q Consensus       599 va~v~~~~~~~~~~~~~~~~~~~~~~L~-~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i  667 (672)
                      +|+|++.++...+.....  .++.++|+ .+++|+.|+++++.|      +|++||++|++|++.+....
T Consensus       511 ~a~v~l~~~~~~~~~~l~--~~~~~~l~~~~~~P~~i~~v~~lP------~t~~GKi~r~~Lr~~~~~~~  572 (632)
T PRK07529        511 VAYVQLKPGASATEAELL--AFARDHIAERAAVPKHVRILDALP------KTAVGKIFKPALRRDAIRRV  572 (632)
T ss_pred             EEEEEEcCCCCCCHHHHH--HHHHHhcchhccCCcEEEEecCCC------CCCCCcccHHHHHHHHHHHH
Confidence            999998765322111111  55667776 579999999999987      99999999999999886643

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.3e-67  Score=595.27  Aligned_cols=532  Identities=18%  Similarity=0.176  Sum_probs=399.8

Q ss_pred             CCCCHHHHHHHHHHH--cCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCE
Q 005874           56 GISTLAELFEQSCKE--HGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEER  133 (672)
Q Consensus        56 ~~~tl~~~~~~~a~~--~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~  133 (672)
                      ..++..+++++.++.  +||++|+.+...         ++        +..+.+||+||.++++++|.+|+++|+++||+
T Consensus        57 ~~n~~~~~l~~~~~~~~~~~~~A~~~~~~---------~~--------~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDr  119 (647)
T PTZ00237         57 ELNTCYNVLDIHVKNPLKRDQDALIYECP---------YL--------KKTIKLTYYQLYEKVCEFSRVLLNLNISKNDN  119 (647)
T ss_pred             eeeHHHHHHHHhhcccCCCCceEEEEEcC---------CC--------CceEEEEHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence            345688889887764  799999987420         11        12468999999999999999999999999999


Q ss_pred             EEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECcc---------chHHHHhhhcCCC-Ccc
Q 005874          134 VAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK---------ELKKLVDLSGQLD-TVK  203 (672)
Q Consensus       134 V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~---------~~~~l~~~~~~~~-~l~  203 (672)
                      |+++++|++|+++++|||+++|++++|+++.++++++.+++++++++++|+++.         ..+.+.+...... ...
T Consensus       120 V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (647)
T PTZ00237        120 VLIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPS  199 (647)
T ss_pred             EEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCC
Confidence            999999999999999999999999999999999999999999999999999752         2233333322111 233


Q ss_pred             EEEEecCCC---cccccccccC-CCeEEEeHHHHHhcccC----CCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHH-
Q 005874          204 HVICMDANI---PSAVSSVEQS-GRWKITSFADVQILGRE----NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGN-  274 (672)
Q Consensus       204 ~ii~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~-  274 (672)
                      +++......   .......... ..-....|+++......    .........++++++|+|||||||.||||+++|.+ 
T Consensus       200 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~  279 (647)
T PTZ00237        200 NVITLFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPH  279 (647)
T ss_pred             EEEEEEcCCcccccccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHH
Confidence            455432111   0000000000 00012457776543211    11122345678999999999999999999999998 


Q ss_pred             HHHHHHHHHhhcCCCCCCcEEEEecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecc
Q 005874          275 VLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASV  354 (672)
Q Consensus       275 l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~  354 (672)
                      +++........+ ....+|++++..|+.|+.+....+.+|..|+++++.+...+...  .....+...++++++|+++++
T Consensus       280 l~~~~~~~~~~~-~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~--~~~~~~~~~i~~~~vt~~~~~  356 (647)
T PTZ00237        280 LVGLKYYWRSII-EKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNK--HIEDDLWNTIEKHKVTHTLTL  356 (647)
T ss_pred             HHHHHHHHHHhc-CCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCC--CchHHHHHHHHHhCeEEEEeC
Confidence            444333333334 67788999999999998776667889999999998321100000  001112233999999999999


Q ss_pred             hHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCH
Q 005874          355 PAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSA  434 (672)
Q Consensus       355 P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~  434 (672)
                      |++++.|.+.......                                          .......++||.+++||+++++
T Consensus       357 P~~~~~l~~~~~~~~~------------------------------------------~~~~~~l~~Lr~i~~~G~~l~~  394 (647)
T PTZ00237        357 PKTIRYLIKTDPEATI------------------------------------------IRSKYDLSNLKEIWCGGEVIEE  394 (647)
T ss_pred             HHHHHHHHhhCccccc------------------------------------------cccccCcchheEEEecCccCCH
Confidence            9999988763111000                                          0001122489999999999999


Q ss_pred             HHHHHHHHHhCCceecccCcccccccccccCC-CCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccC---
Q 005874          435 DTQRFINICLGAPIGQGYGLTETCAGGTFSEV-DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP---  510 (672)
Q Consensus       435 ~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~-~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~---  510 (672)
                      ++.+++++.+++++++.||+||+++..+.... .....+++|.|+|+++++|+| +++..+   +.|+.|||+++||   
T Consensus       395 ~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d-~~g~~~---~~ge~GEl~v~~p~~p  470 (647)
T PTZ00237        395 SIPEYIENKLKIKSSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILS-EDGKEL---NVNEIGEVAFKLPMPP  470 (647)
T ss_pred             HHHHHHHHhcCCCEEeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEEC-CCCCCC---CCCCceEEEEeccCCc
Confidence            99999999999999999999999865443322 223348899999999999999 677665   4788999999986   


Q ss_pred             cccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEE
Q 005874          511 NVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMH  590 (672)
Q Consensus       511 ~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~  590 (672)
                      +++.|||++++.+.+.|..   .+|||+|||+|++|+||.|+|+||+||+||+ +|++|+|.+||++|.+||.|.+|+|+
T Consensus       471 ~~~~gy~~~~~~~~~~f~~---~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~-~G~rI~p~eIE~~l~~~p~V~eaavv  546 (647)
T PTZ00237        471 SFATTFYKNDEKFKQLFSK---FPGYYNSGDLGFKDENGYYTIVSRSDDQIKI-SGNKVQLNTIETSILKHPLVLECCSI  546 (647)
T ss_pred             hhhCceeCCHHHHHHHHhC---CCCEEECCcEEEECCCCeEEEEeccCCEEEE-CCEEeCHHHHHHHHHhCCCceeeEEE
Confidence            7899999999999987741   2689999999999999999999999999997 59999999999999999999999999


Q ss_pred             ecCCC---CeEEEEEEcChhH------HHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHH
Q 005874          591 ADPFH---SYCVALVVASQPA------VEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRK  661 (672)
Q Consensus       591 g~~~~---~~~va~v~~~~~~------~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~  661 (672)
                      |.+++   +.++|+|+++++.      ..+... .....++++|+.+++|+.|+++++.|      +|++||++|+.|++
T Consensus       547 g~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~l~~-~i~~~~~~~l~~~~~P~~i~~v~~lP------~T~sGKi~R~~Lr~  619 (647)
T PTZ00237        547 GIYDPDCYNVPIGLLVLKQDQSNQSIDLNKLKN-EINNIITQDIESLAVLRKIIIVNQLP------KTKTGKIPRQIISK  619 (647)
T ss_pred             eeEcCCCCCEEEEEEEeccCccccCCCHHHHHH-HHHHHHHhhcCccccCcEEEEcCCCC------CCCCccEeHHHHHH
Confidence            98865   5699999987431      111111 11255678999999999999999988      99999999999999


Q ss_pred             HHH
Q 005874          662 AFA  664 (672)
Q Consensus       662 ~~~  664 (672)
                      .+.
T Consensus       620 ~~~  622 (647)
T PTZ00237        620 FLN  622 (647)
T ss_pred             HHc
Confidence            874

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-67  Score=588.95  Aligned_cols=492  Identities=20%  Similarity=0.213  Sum_probs=405.3

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF  137 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~  137 (672)
                      .++.++|++.++.+||++|+..            +++           .+||+|+.++++++|++|.+.|+++|++|+++
T Consensus        49 ~~~~~~~~~~a~~~pd~~Al~~------------~~~-----------~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~  105 (549)
T PRK07788         49 GPFAGLVAHAARRAPDRAALID------------ERG-----------TLTYAELDEQSNALARGLLALGVRAGDGVAVL  105 (549)
T ss_pred             chHHHHHHHHHHHCCCceEEEE------------CCC-----------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            4899999999999999999985            333           69999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCccccc
Q 005874          138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS  217 (672)
Q Consensus       138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~  217 (672)
                      ++|++++++++|||+++|++++|+++.++.+++.+++++++++.+|++++..+.+.+.....+.++.++........   
T Consensus       106 ~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  182 (549)
T PRK07788        106 ARNHRGFVLALYAAGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEP---  182 (549)
T ss_pred             cCCCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCcccc---
Confidence            99999999999999999999999999999999999999999999999988777666654444555444332221110   


Q ss_pred             ccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEEE
Q 005874          218 SVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA  297 (672)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~  297 (672)
                           ....+.+++++.......   +.+...++.++++|||||||.||||+++|+++++.+......+ .+..+|++++
T Consensus       183 -----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~~~  253 (549)
T PRK07788        183 -----SGSTDETLDDLIAGSSTA---PLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRV-PFRAGETTLL  253 (549)
T ss_pred             -----CCcCcccHHHHhcCCCCC---CCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhC-CCCcCCeEEE
Confidence                 112345677766543221   2223456789999999999999999999999999888877777 7889999999


Q ss_pred             ecChHhHHHHHHHHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCc
Q 005874          298 YLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGG  374 (672)
Q Consensus       298 ~~pl~h~~~~~~~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~  374 (672)
                      .+|++|.+++...+.++..|+++++   +++..+.+.           ++++++|++.++|+++..+.+.......    
T Consensus       254 ~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~~~~~~~~----  318 (549)
T PRK07788        254 PAPMFHATGWAHLTLAMALGSTVVLRRRFDPEATLED-----------IAKHKATALVVVPVMLSRILDLGPEVLA----  318 (549)
T ss_pred             ccchHHHHHHHHHHHHHHhCCEEEECCCCCHHHHHHH-----------HHHhCCcEEEEHHHHHHHHHhCcccccC----
Confidence            9999999999888888999999988   455555555           9999999999999999988764321000    


Q ss_pred             hhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCc
Q 005874          375 LSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGL  454 (672)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~  454 (672)
                                                               ....++||.+++||+++++++.+.+++.+++++++.||+
T Consensus       319 -----------------------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~  357 (549)
T PRK07788        319 -----------------------------------------KYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGS  357 (549)
T ss_pred             -----------------------------------------CCCCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCc
Confidence                                                     001248999999999999999999999999999999999


Q ss_pred             ccccccccccCCC-CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCC
Q 005874          455 TETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKG  533 (672)
Q Consensus       455 TE~~~~~~~~~~~-~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~  533 (672)
                      ||++..+.....+ ....+++|.|.++++++|+| +++..++   .|+.|||+++|++++.||+++++.   ..     .
T Consensus       358 TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~---~g~~Gel~v~g~~~~~gY~~~~~~---~~-----~  425 (549)
T PRK07788        358 TEVAFATIATPEDLAEAPGTVGRPPKGVTVKILD-ENGNEVP---RGVVGRIFVGNGFPFEGYTDGRDK---QI-----I  425 (549)
T ss_pred             chhchhhccChhhhhhcCCCcccCCCCcEEEEEC-CCcCCCC---CCCeEEEEEeCCCccccccCCCcc---cc-----c
Confidence            9987654433221 23457899999999999999 6666554   689999999999999999998765   12     5


Q ss_pred             CceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCCC---eEEEEEEcChhHHH
Q 005874          534 MRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHS---YCVALVVASQPAVE  610 (672)
Q Consensus       534 ~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~~---~~va~v~~~~~~~~  610 (672)
                      +|||+|||+|++++||.+++.||+||+||. +|++|+|.+||+++.+||+|.+++|++.+++.   .++|+|+++++...
T Consensus       426 ~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~  504 (549)
T PRK07788        426 DGLLSSGDVGYFDEDGLLFVDGRDDDMIVS-GGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAAL  504 (549)
T ss_pred             CCceecCceEEEcCCCCEEEeccCcceEEE-CCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCCC
Confidence            689999999999999999999999999996 69999999999999999999999999987653   58999998764321


Q ss_pred             HHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHH
Q 005874          611 EWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRK  661 (672)
Q Consensus       611 ~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~  661 (672)
                      +...  ....++++|+.|++|..|+++++.|      +|++||++|++|++
T Consensus       505 ~~~~--l~~~~~~~l~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~  547 (549)
T PRK07788        505 DEDA--IKDYVRDNLARYKVPRDVVFLDELP------RNPTGKVLKRELRE  547 (549)
T ss_pred             CHHH--HHHHHHHhhhcCCCCcEEEEeCCCC------CCCCcCEeHHHhhc
Confidence            1111  1156678999999999999999887      99999999999975

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=1.3e-66  Score=589.14  Aligned_cols=525  Identities=18%  Similarity=0.200  Sum_probs=398.8

Q ss_pred             CHHHHHHHHHH-HcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 005874           59 TLAELFEQSCK-EHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF  137 (672)
Q Consensus        59 tl~~~~~~~a~-~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~  137 (672)
                      ...++++++++ .+|+++|+.+..           ..      .+..+.+||+||.+++.++|++|+++|+++||+|+++
T Consensus        89 ~~~~~l~~~~~~~~~~~~Al~~~~-----------~~------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~  151 (666)
T PLN02654         89 ICYNCLDRNVEAGNGDKIAIYWEG-----------NE------PGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIY  151 (666)
T ss_pred             HHHHHHHHhhccCCCCCEEEEEEc-----------CC------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            45788887775 489999998631           11      1234689999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchH---------HHHhhhcCC----CCccE
Q 005874          138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELK---------KLVDLSGQL----DTVKH  204 (672)
Q Consensus       138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~l~~~~~~~----~~l~~  204 (672)
                      ++|++++++++|||+++|++++|+++.++++++.+++++++++++|+++....         .+.+.....    .....
T Consensus       152 ~pn~~e~v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~  231 (666)
T PLN02654        152 LPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGI  231 (666)
T ss_pred             cCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccE
Confidence            99999999999999999999999999999999999999999999999876421         121111111    11122


Q ss_pred             EEEecCCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHH-HHHHH
Q 005874          205 VICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAT-VSAVM  283 (672)
Q Consensus       205 ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~-~~~~~  283 (672)
                      ++..+............ .......|+++..... ...+.....++++++|+|||||||.||||+++|.+++.. .....
T Consensus       232 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~  309 (666)
T PLN02654        232 CLTYENQLAMKREDTKW-QEGRDVWWQDVVPNYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFK  309 (666)
T ss_pred             EEEeccccccccccccc-ccCCcccHHHHhhcCC-CCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHH
Confidence            22222111000000000 0011233555543211 111223346799999999999999999999999998654 34445


Q ss_pred             hhcCCCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHH
Q 005874          284 TIVPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVR  362 (672)
Q Consensus       284 ~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~  362 (672)
                      ..+ +++++|++++.+|+.|+.+... .+.+|..|+++++.+......+    ...+...++++++|+++++|+++..|.
T Consensus       310 ~~~-~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~----~~~~~~~i~~~~vt~~~~~P~~~~~l~  384 (666)
T PLN02654        310 YAF-DYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPD----SGRCWDIVDKYKVTIFYTAPTLVRSLM  384 (666)
T ss_pred             Hhc-CCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCC----HHHHHHHHHHhCCeEEEeCHHHHHHHH
Confidence            556 8999999999999999998765 6778999999998322111111    111222399999999999999999887


Q ss_pred             HHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHH
Q 005874          363 DGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINI  442 (672)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~  442 (672)
                      +......                                             .....++||.++++|+++++++.+++..
T Consensus       385 ~~~~~~~---------------------------------------------~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~  419 (666)
T PLN02654        385 RDGDEYV---------------------------------------------TRHSRKSLRVLGSVGEPINPSAWRWFFN  419 (666)
T ss_pred             hhCcccc---------------------------------------------ccCChhheeEEEEecCCCCHHHHHHHHH
Confidence            6321100                                             0111248999999999999999999999


Q ss_pred             HhC---CceecccCcccccccccccCCC--CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEcc--Cccccc
Q 005874          443 CLG---APIGQGYGLTETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAG--PNVTVG  515 (672)
Q Consensus       443 ~~~---~~v~~~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g--~~v~~g  515 (672)
                      .+|   +++.+.||+||+++........  ....+++|.|.+|++++|+| ++++.+   +.++.|||++++  |+++.|
T Consensus       420 ~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~~---~~~~~Gel~v~~~~p~~~~g  495 (666)
T PLN02654        420 VVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKEI---EGECSGYLCVKKSWPGAFRT  495 (666)
T ss_pred             HhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCCC---CCCCceEEEEcCCCchhhhh
Confidence            887   7899999999998765543332  34568999999999999999 777654   356789999999  789999


Q ss_pred             ccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC
Q 005874          516 YFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH  595 (672)
Q Consensus       516 Y~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~  595 (672)
                      ||+|++.+...+...  .+|||+|||+|++|+||.++|+||+||+||+ +|++|+|.+||+++.+||.|.+++|+|.+++
T Consensus       496 y~~~~~~~~~~~~~~--~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~  572 (666)
T PLN02654        496 LYGDHERYETTYFKP--FAGYYFSGDGCSRDKDGYYWLTGRVDDVINV-SGHRIGTAEVESALVSHPQCAEAAVVGIEHE  572 (666)
T ss_pred             hcCChHHHHHhhhhc--CCCEEEeCceEEECCCCcEEEeeeccCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEeeEcC
Confidence            999999888766411  2689999999999999999999999999997 5999999999999999999999999998765


Q ss_pred             ---CeEEEEEEcChhHHH-HHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874          596 ---SYCVALVVASQPAVE-EWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       596 ---~~~va~v~~~~~~~~-~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                         +.++|+|+++++... +...+.....++++|+.+++|+.|+++++.|      +|.+||++|+.|++.+..
T Consensus       573 ~~ge~~~a~Vvl~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP------~T~sGKi~r~~l~~~~~~  640 (666)
T PLN02654        573 VKGQGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLP------KTRSGKIMRRILRKIASR  640 (666)
T ss_pred             CCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCCEEEECCCCC------CCCCcCchHHHHHHHHcC
Confidence               369999998875321 1111122266778999999999999999987      999999999999998754

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=9.4e-67  Score=589.65  Aligned_cols=518  Identities=21%  Similarity=0.237  Sum_probs=409.3

Q ss_pred             CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874           57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI  136 (672)
Q Consensus        57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i  136 (672)
                      .+..++++++.++.+||++|+.+..           ..      .++.+.+||+||.+++.++|++|+++|+++||+|++
T Consensus        56 ~n~~~~~l~~~~~~~p~~~Al~~~~-----------~~------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i  118 (625)
T TIGR02188        56 LNVSYNCVDRHLEARPDKVAIIWEG-----------DE------PGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAI  118 (625)
T ss_pred             EEHHHHHHHHhhccCCCCeEEEEEc-----------CC------CCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            3457888888888999999998742           11      234568999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccc---------hHHHHhhhcCCC-CccEEE
Q 005874          137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKE---------LKKLVDLSGQLD-TVKHVI  206 (672)
Q Consensus       137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~l~~~~~~~~-~l~~ii  206 (672)
                      +++|++++++++|||+++|++++|+++.++++++.+++++++++++|+++..         .+.+.+.....+ .++.++
T Consensus       119 ~~~n~~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (625)
T TIGR02188       119 YMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVL  198 (625)
T ss_pred             ECCCCHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEE
Confidence            9999999999999999999999999999999999999999999999998753         233344444445 566666


Q ss_pred             EecCCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhc
Q 005874          207 CMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV  286 (672)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~  286 (672)
                      .++...... . .   .......|+++..... ....+....++++++|+|||||||.||||+++|++++..........
T Consensus       199 ~~~~~~~~~-~-~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~  272 (625)
T TIGR02188       199 VVRRTGNPV-P-W---VEGRDVWWHDLMAKAS-AYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYV  272 (625)
T ss_pred             EEcCCCCCc-C-c---cccccccHHHHHhhcC-CCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhc
Confidence            654322110 0 0   0111234666654322 12233445678999999999999999999999999876554433332


Q ss_pred             CCCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeCC-------cccccCchhhhhcccccccccccceeeecchHHH
Q 005874          287 PDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYGT-------PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAIL  358 (672)
Q Consensus       287 ~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~~-------~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l  358 (672)
                      .+++++|++++.+|++|+.+... .+.+|..|+++++.+       +..+++.           ++++++|++.++|+++
T Consensus       273 ~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~  341 (625)
T TIGR02188       273 FDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEI-----------IEKHKVTIFYTAPTAI  341 (625)
T ss_pred             cCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHH-----------HHHhCCeEEEeCHHHH
Confidence            38889999999999999988654 677899999999832       3333343           9999999999999999


Q ss_pred             HHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHH
Q 005874          359 DRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQR  438 (672)
Q Consensus       359 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~  438 (672)
                      +.|.+......                                             +....++||.+++||+++++++.+
T Consensus       342 ~~l~~~~~~~~---------------------------------------------~~~~l~~lr~i~~~G~~l~~~~~~  376 (625)
T TIGR02188       342 RALMRLGDEWV---------------------------------------------KKHDLSSLRLLGSVGEPINPEAWM  376 (625)
T ss_pred             HHHHhcCCccc---------------------------------------------ccCCccceeEEEEecCCCCHHHHH
Confidence            98876321100                                             111224899999999999999999


Q ss_pred             HHHHHhC---CceecccCcccccccccccCCC--CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEcc--Cc
Q 005874          439 FINICLG---APIGQGYGLTETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAG--PN  511 (672)
Q Consensus       439 ~~~~~~~---~~v~~~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g--~~  511 (672)
                      ++.+.++   +++++.||+||+++.+......  ....+++|.|+++++++|+| ++++.++  ++|+.|||+++|  |+
T Consensus       377 ~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~--~~g~~GeL~v~~p~p~  453 (625)
T TIGR02188       377 WYYKVVGKERCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVE--GPGEGGYLVIKQPWPG  453 (625)
T ss_pred             HHHHHcCCCCCceEecccccccCCceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCC--CCCCeEEEEEccCCCc
Confidence            9998875   7899999999998765443322  34568899999999999999 7776542  267899999999  68


Q ss_pred             ccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEe
Q 005874          512 VTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHA  591 (672)
Q Consensus       512 v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g  591 (672)
                      +++|||++++.+.+.+...  .+|||+|||+|++|+||.++++||+||+||+ +|++|+|.+||++|.+||.|.+|+|++
T Consensus       454 ~~~gy~~~~~~~~~~~~~~--~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg  530 (625)
T TIGR02188       454 MLRTIYGDHERFVDTYFSP--FPGYYFTGDGARRDKDGYIWITGRVDDVINV-SGHRLGTAEIESALVSHPAVAEAAVVG  530 (625)
T ss_pred             ccccccCChHHHHHHHhcc--CCCEEECCceEEEcCCCcEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEe
Confidence            9999999999888776421  3689999999999999999999999999997 599999999999999999999999999


Q ss_pred             cCCC---CeEEEEEEcChhHHHHH-HHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874          592 DPFH---SYCVALVVASQPAVEEW-AAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       592 ~~~~---~~~va~v~~~~~~~~~~-~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                      .+++   +.++|+|+++++...+. ........++++|+.+++|+.|+++++.|      +|++||++|+.|++.+..
T Consensus       531 ~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP------~t~sGKi~r~~l~~~~~~  602 (625)
T TIGR02188       531 IPDDIKGQAIYAFVTLKDGYEPDDELRKELRKHVRKEIGPIAKPDKIRFVPGLP------KTRSGKIMRRLLRKIAAG  602 (625)
T ss_pred             eEcCCCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHhhcCCCccCcEEEECCCCC------CCCCccchHHHHHHHHcC
Confidence            7665   46899999876542111 11112266778999999999999999987      999999999999998754

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=3.6e-66  Score=584.08  Aligned_cols=524  Identities=18%  Similarity=0.213  Sum_probs=401.3

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF  137 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~  137 (672)
                      +.++++|++.+..+|+++|+.+.+           ..      .|..+.+||+||.++++++|++|+++|+++||+|+++
T Consensus        52 n~~~~~l~~~~~~~p~~~Al~~~~-----------~~------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~  114 (628)
T TIGR02316        52 NLCHNALDRHLDERGEQLALVTVS-----------SE------TGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIY  114 (628)
T ss_pred             eHHHHHHHHHhCcCCCCeEEEEEc-----------CC------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            446788988888899999998731           11      2344679999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccc---------hHHHHhhhcCC-CCccEEEE
Q 005874          138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKE---------LKKLVDLSGQL-DTVKHVIC  207 (672)
Q Consensus       138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~l~~~~~~~-~~l~~ii~  207 (672)
                      ++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++..         .+.+.+..... +....++.
T Consensus       115 ~~n~~e~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  194 (628)
T TIGR02316       115 MPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLL  194 (628)
T ss_pred             cCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEE
Confidence            999999999999999999999999999999999999999999999998642         12222222221 23455666


Q ss_pred             ecCCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHH-HHHHhhc
Q 005874          208 MDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATV-SAVMTIV  286 (672)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~-~~~~~~~  286 (672)
                      ++...... .   . ......+|.++.........+.....++++++|+|||||||.||||+++|.+++... ......+
T Consensus       195 ~~~~~~~~-~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~  269 (628)
T TIGR02316       195 VDRGLAPM-R---L-IPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIF  269 (628)
T ss_pred             EeCCCCCc-C---c-ccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhc
Confidence            65321110 0   0 001123566665433222222233467899999999999999999999999986443 3444445


Q ss_pred             CCCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHH
Q 005874          287 PDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGV  365 (672)
Q Consensus       287 ~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~  365 (672)
                       +++++|++++.+|+.|+.++.. ++.+|..|+++++.+......+    ...+...++++++|+++++|++++.|.+..
T Consensus       270 -~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~  344 (628)
T TIGR02316       270 -GIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPD----PGVWWSIVERYGVRTMFSAPTAIRVLKKQD  344 (628)
T ss_pred             -CCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCC----HHHHHHHHHHhCCeEEEeCHHHHHHHHhcC
Confidence             8899999999999999998654 6778999999998332111111    111223389999999999999998776521


Q ss_pred             HHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhC
Q 005874          366 RKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLG  445 (672)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~  445 (672)
                      ...                                             .+....++||.+++||+++++++.++++..++
T Consensus       345 ~~~---------------------------------------------~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~  379 (628)
T TIGR02316       345 AAW---------------------------------------------LRKHDLSSLHWLFLAGEPLDEPTAHWITDGLG  379 (628)
T ss_pred             Ccc---------------------------------------------cccCCccceeEEEEecCCCCHHHHHHHHHHhC
Confidence            100                                             01112248999999999999999999999999


Q ss_pred             CceecccCcccccccccccCC----CCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccC---cccccccC
Q 005874          446 APIGQGYGLTETCAGGTFSEV----DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP---NVTVGYFK  518 (672)
Q Consensus       446 ~~v~~~YG~TE~~~~~~~~~~----~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~---~v~~gY~~  518 (672)
                      .++++.||+||++...+....    .....+++|.|+++++++|+|.++++.+   +.|+.|||+++||   +++.||++
T Consensus       380 ~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~---~~g~~Gel~v~gp~~~g~~~~~~~  456 (628)
T TIGR02316       380 KPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPC---GPNEKGVLTVVPPLPPGCLSTVWG  456 (628)
T ss_pred             CCEEecccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCC---CCCCcEEEEEecCCCccccccccC
Confidence            999999999999854333221    1234588999999999999993356654   4788999999998   57899999


Q ss_pred             CchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---
Q 005874          519 NEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---  595 (672)
Q Consensus       519 ~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---  595 (672)
                      +++.+.+.+.... .++||+|||+|++|+||.++++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   
T Consensus       457 ~~~~~~~~~~~~~-~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~-~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g  534 (628)
T TIGR02316       457 DDARFLKTYWSHF-KRPLYSSFDWGIRDEDGYTFILGRTDDVINV-AGHRLGTREIEESVSSHPSVAEVAVVGVHDELKG  534 (628)
T ss_pred             ChHHHHHhhhhcC-CCCEEECCceEEEcCCCcEEEEEcCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCC
Confidence            9988876653222 4789999999999999999999999999997 5999999999999999999999999998765   


Q ss_pred             CeEEEEEEcChhHH------HHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHH
Q 005874          596 SYCVALVVASQPAV------EEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFA  664 (672)
Q Consensus       596 ~~~va~v~~~~~~~------~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~  664 (672)
                      +.++++|+++++..      ...........+.++|+.|++|+.|+++++.|      +|++||++|+.|++.+.
T Consensus       535 ~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~L~~~~~P~~v~~v~~lP------~t~sGKi~r~~L~~~~~  603 (628)
T TIGR02316       535 QVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALP------KTRSGKLLRRSIQALAE  603 (628)
T ss_pred             eEEEEEEEEcCCcccccccchHHHHHHHHHHHHHhcCCCcCCCEEEEcCCCC------CCCchHHHHHHHHHHHc
Confidence            35899998775421      00111122266778999999999999999988      99999999999998764

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=3.9e-66  Score=573.12  Aligned_cols=495  Identities=20%  Similarity=0.222  Sum_probs=388.0

Q ss_pred             CCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 005874           56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA  135 (672)
Q Consensus        56 ~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~  135 (672)
                      ...++.+.|.+.++++|++.|+...           ++           ..+||+||.++++++|..|.+   .+|++|+
T Consensus        17 ~~~~~~~~~~~~~~~~p~~~a~~~~-----------~~-----------~~~Ty~el~~~~~~lA~~L~~---~~gd~Va   71 (539)
T PRK06334         17 SGKTVLESFLKLCSEMTTATVCWDE-----------QL-----------GKLSYNQVRKAVIALATKVSK---YPDQHIG   71 (539)
T ss_pred             cCCcHHHHHHHHHHhCCCceEEEeC-----------CC-----------CcccHHHHHHHHHHHHHHHhh---ccCCeEE
Confidence            4478999999999999999998752           21           259999999999999999987   3899999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCC-CccEEEEecCCCcc
Q 005874          136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLD-TVKHVICMDANIPS  214 (672)
Q Consensus       136 i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~-~l~~ii~~~~~~~~  214 (672)
                      |+++|+++|++++|||+++|++++|+++.++.+++.++++.++++++|++.+....+.+...... ....++++++....
T Consensus        72 l~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  151 (539)
T PRK06334         72 IMMPASAGAYIAYFATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKE  151 (539)
T ss_pred             EEcCCchHHHHHHHHHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhh
Confidence            99999999999999999999999999999999999999999999999999877666655432211 11123333221000


Q ss_pred             cccccccCCCeEEEeHHHHHhcc----cC-----CCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhh
Q 005874          215 AVSSVEQSGRWKITSFADVQILG----RE-----NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI  285 (672)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~----~~-----~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~  285 (672)
                                   ..+.+.....    ..     .........++++++|+|||||||.||||++||+++++........
T Consensus       152 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~  218 (539)
T PRK06334        152 -------------LSFWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKF  218 (539)
T ss_pred             -------------ccHHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHh
Confidence                         0011100000    00     0001223467899999999999999999999999999888777776


Q ss_pred             cCCCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEee----CCcccccCchhhhhcccccccccccceeeecchHHHHH
Q 005874          286 VPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY----GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR  360 (672)
Q Consensus       286 ~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~----~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~  360 (672)
                      + .++.+|++++++|++|.+++.. .+.++..|+++++    +++..+.+.           ++++++|++.++|.++..
T Consensus       219 ~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~  286 (539)
T PRK06334        219 F-SPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEM-----------IDEAKVTFLGSTPVFFDY  286 (539)
T ss_pred             c-CCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHH-----------HHHhCCcEEEecHHHHHH
Confidence            7 8889999999999999999875 6778999999987    233444444           999999999999999999


Q ss_pred             HHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHH
Q 005874          361 VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFI  440 (672)
Q Consensus       361 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~  440 (672)
                      |++......                                               ...++||.+++||+++++++.+.+
T Consensus       287 l~~~~~~~~-----------------------------------------------~~~~~lr~i~~gG~~l~~~~~~~~  319 (539)
T PRK06334        287 ILKTAKKQE-----------------------------------------------SCLPSLRFVVIGGDAFKDSLYQEA  319 (539)
T ss_pred             HHHhhhhcc-----------------------------------------------cccccccEEEECCccCCHHHHHHH
Confidence            876432111                                               112489999999999999999999


Q ss_pred             HHHh-CCceecccCcccccccccccCCCC-CCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccC
Q 005874          441 NICL-GAPIGQGYGLTETCAGGTFSEVDD-SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFK  518 (672)
Q Consensus       441 ~~~~-~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~  518 (672)
                      ++.+ ++.+++.||+||++.+++...... ...+++|.|+++++++|+|.+.+..+   ++|+.|||+|+|++++.|||+
T Consensus       320 ~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~---~~g~~Gel~v~g~~~~~GY~~  396 (539)
T PRK06334        320 LKTFPHIQLRQGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIVSEETKVPV---SSGETGLVLTRGTSLFSGYLG  396 (539)
T ss_pred             HHHCCCCeEEecccccccCceEEeccCCCCCCCCcCceecCCCEEEEEcCCCCccC---CCCceEEEEEecCcccccccC
Confidence            9887 689999999999987666543322 23467999999999999993334443   578999999999999999999


Q ss_pred             CchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccce------EEEEec
Q 005874          519 NEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDN------IMMHAD  592 (672)
Q Consensus       519 ~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~------~~V~g~  592 (672)
                      +++.+....   .+++|||+|||+|++|++|.|++.||.||+||+ +|++|+|.+||++|.+||+|.+      ++|++.
T Consensus       397 ~~~~~~~~~---~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~  472 (539)
T PRK06334        397 EDFGQGFVE---LGGETWYVTGDLGYVDRHGELFLKGRLSRFVKI-GAEMVSLEALESILMEGFGQNAADHAGPLVVCGL  472 (539)
T ss_pred             Cccccccee---eCCceeEECCCEEEECCCCeEEEEeccCCeEEE-CCEEECHHHHHHHHHHccCCccccccCceEEEcC
Confidence            998654321   125789999999999999999999999999997 6999999999999999999987      788887


Q ss_pred             CCCC-eEEEEEEcChhHHHHHHHHcChhhhhc-CCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874          593 PFHS-YCVALVVASQPAVEEWAAKQGIVGKNA-RLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD  666 (672)
Q Consensus       593 ~~~~-~~va~v~~~~~~~~~~~~~~~~~~~~~-~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~  666 (672)
                      +++. .++++++.... ..+ ..    ..+.+ .++.|++|+.++++++.|      +|++|||+|++|++.....
T Consensus       473 ~~~~~~~~~~~~~~~~-~~~-~~----~~l~~~~~~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~  536 (539)
T PRK06334        473 PGEKVRLCLFTTFPTS-ISE-VN----DILKNSKTSSILKISYHHQVESIP------MLGTGKPDYCSLNALAKSL  536 (539)
T ss_pred             CCCceEEEEEEeccCC-hHH-HH----HHHHhcCCcccccchheeeecccc------cccCCcccHHHHHHHHHHh
Confidence            7654 45555554321 111 11    33334 478999999999999988      9999999999999886553

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.7e-65  Score=580.24  Aligned_cols=513  Identities=21%  Similarity=0.241  Sum_probs=405.1

Q ss_pred             HHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcC
Q 005874           60 LAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFAD  139 (672)
Q Consensus        60 l~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~  139 (672)
                      ..++|++.++++||++|+.+...         ++        ++.+.+||+||.+++.++|++|+++|+++||+|+++++
T Consensus        69 ~~~~l~~~~~~~p~~~Al~~~~~---------~~--------~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~  131 (637)
T PRK00174         69 SYNCLDRHLKTRGDKVAIIWEGD---------DP--------GDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMP  131 (637)
T ss_pred             HHHHHHHhhccCCCCeEEEEECC---------CC--------CceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcC
Confidence            56788888889999999987310         11        24468999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccch---------HHHHhhhcCCCCccEEEEecC
Q 005874          140 TRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL---------KKLVDLSGQLDTVKHVICMDA  210 (672)
Q Consensus       140 ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~l~~~~~~~~~l~~ii~~~~  210 (672)
                      |++++++++|||+++|++++|+++.++.+++.+++++++++++|+++...         +.+.+.....+.++.++.++.
T Consensus       132 n~~e~~~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (637)
T PRK00174        132 MIPEAAVAMLACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRR  211 (637)
T ss_pred             CCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcC
Confidence            99999999999999999999999999999999999999999999987532         333334444566667776654


Q ss_pred             CCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHH-hhcCCC
Q 005874          211 NIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVM-TIVPDL  289 (672)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~-~~~~~~  289 (672)
                      ..... ..    .......++++..... ...+.....++++++|+|||||||.||||+++|++++....... ..+ .+
T Consensus       212 ~~~~~-~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-~~  284 (637)
T PRK00174        212 TGGDV-DW----VEGRDLWWHELVAGAS-DECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVF-DY  284 (637)
T ss_pred             CCCCc-Cc----CCCCcccHHHHHhhcC-CCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhcc-CC
Confidence            32110 00    0112334666654322 22223445678999999999999999999999999876544433 334 88


Q ss_pred             CCCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeCC-------cccccCchhhhhcccccccccccceeeecchHHHHHH
Q 005874          290 GSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYGT-------PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRV  361 (672)
Q Consensus       290 ~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~~-------~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l  361 (672)
                      +++|++++.+|++|..+... .+.+|..|+++++.+       +..+++.           ++++++|++.++|++++.|
T Consensus       285 ~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l  353 (637)
T PRK00174        285 KDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEV-----------IDKHKVTIFYTAPTAIRAL  353 (637)
T ss_pred             CCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHH-----------HHhcCCeEEeecHHHHHHH
Confidence            89999999999999998754 677899999998832       3333333           9999999999999999988


Q ss_pred             HHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHH
Q 005874          362 RDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFIN  441 (672)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~  441 (672)
                      .+......                                             .....++||.+++||+++++++.+++.
T Consensus       354 ~~~~~~~~---------------------------------------------~~~~~~~lr~i~~~Ge~l~~~~~~~~~  388 (637)
T PRK00174        354 MKEGDEHP---------------------------------------------KKYDLSSLRLLGSVGEPINPEAWEWYY  388 (637)
T ss_pred             HhcCCccc---------------------------------------------ccCCccceeEEEEeCCCCCHHHHHHHH
Confidence            76321100                                             011124899999999999999999999


Q ss_pred             HHhC---CceecccCcccccccccccCCC--CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEcc--Ccccc
Q 005874          442 ICLG---APIGQGYGLTETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAG--PNVTV  514 (672)
Q Consensus       442 ~~~~---~~v~~~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g--~~v~~  514 (672)
                      +.++   +++++.||+||+++.+......  ....+++|.|+++++++|+| +++..+   +.|+.|||+|+|  |++++
T Consensus       389 ~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~~---~~g~~Gel~v~g~~p~~~~  464 (637)
T PRK00174        389 KVVGGERCPIVDTWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVD-EEGNPL---EGGEGGNLVIKDPWPGMMR  464 (637)
T ss_pred             HHhCCCCCceEecccccccCCceEecCCCCCCcCCCcccCCCCCceEEEEC-CCCCCC---CCCCcEEEEEcCCCCcccc
Confidence            8875   7899999999998765443322  23457899999999999999 667655   478899999999  68999


Q ss_pred             cccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCC
Q 005874          515 GYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPF  594 (672)
Q Consensus       515 gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~  594 (672)
                      |||++++.+.+.+...  .+|||+|||+|++|+||.++++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.++
T Consensus       465 gy~~~~~~~~~~~~~~--~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~  541 (637)
T PRK00174        465 TIYGDHERFVKTYFST--FKGMYFTGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKVAEAAVVGRPD  541 (637)
T ss_pred             cccCCHHHHHHhhhcC--CCCEEECCceEEEcCCCcEEEEEecccEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEc
Confidence            9999999887766421  4689999999999999999999999999998 599999999999999999999999999765


Q ss_pred             C---CeEEEEEEcChhHHHH-HHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874          595 H---SYCVALVVASQPAVEE-WAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       595 ~---~~~va~v~~~~~~~~~-~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                      +   +.++|+|++.++...+ ...+.....+.+.|+.+++|..|+++++.|      +|++||++|+.|++.+..
T Consensus       542 ~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~  610 (637)
T PRK00174        542 DIKGQGIYAFVTLKGGEEPSDELRKELRNWVRKEIGPIAKPDVIQFAPGLP------KTRSGKIMRRILRKIAEG  610 (637)
T ss_pred             CCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhcCCccCCCEEEEcCCCC------CCCCcchHHHHHHHHHcC
Confidence            4   4699999987653211 111112266778999999999999999987      999999999999988643

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.8e-65  Score=572.19  Aligned_cols=513  Identities=24%  Similarity=0.354  Sum_probs=405.5

Q ss_pred             CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHh-cCCCCCCE
Q 005874           55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQ-LGHKKEER  133 (672)
Q Consensus        55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~-~g~~~g~~  133 (672)
                      +...|+.++|++.++.+|+++|+..            +++           .+||+||.++++++|++|.+ .|+++|++
T Consensus        21 ~~~~~~~~~l~~~a~~~p~~~al~~------------~~~-----------~~Ty~el~~~~~~la~~L~~~~gi~~gd~   77 (562)
T PRK05677         21 DEYPNIQAVLKQSCQRFADKPAFSN------------LGK-----------TLTYGELYKLSGAFAAWLQQHTDLKPGDR   77 (562)
T ss_pred             CccCcHHHHHHHHHHhCCCCeeEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence            3446899999999999999999985            444           79999999999999999997 59999999


Q ss_pred             EEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCc
Q 005874          134 VAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIP  213 (672)
Q Consensus       134 V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~  213 (672)
                      |+|+++|+++|++++|||+++|++++|+++..+.+++.+++++++++++|+++.....+.+..... .++.++..+....
T Consensus        78 Vai~~~n~~~~~~~~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  156 (562)
T PRK05677         78 IAVQLPNVLQYPVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKT-GVKHVIVTEVADM  156 (562)
T ss_pred             EEEECCCCHHHHHHHHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhcc-CcceeEEeccccc
Confidence            999999999999999999999999999999999999999999999999999887766555443322 3444444321110


Q ss_pred             cc--c--------cccc----cCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHH
Q 005874          214 SA--V--------SSVE----QSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATV  279 (672)
Q Consensus       214 ~~--~--------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~  279 (672)
                      ..  .        ....    .........+.+................++++++|+|||||||.||||+++|++++...
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~  236 (562)
T PRK05677        157 LPPLKRLLINAVVKHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANM  236 (562)
T ss_pred             ccchhhhhcccchhhccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHH
Confidence            00  0        0000    00001123455555443333322344567999999999999999999999999998876


Q ss_pred             HHHHhhc-CCCC-CCcEEEEecChHhHHHHHH-HHHHhHhCcEEee-CC---cccccCchhhhhcccccccccccceeee
Q 005874          280 SAVMTIV-PDLG-SKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY-GT---PLTLTDTSSKIKKGTQGDASVLRPTVMA  352 (672)
Q Consensus       280 ~~~~~~~-~~~~-~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~-~~---~~~l~~~~~~~~~~~~~~i~~~k~t~~~  352 (672)
                      ......+ ..+. ..+++++.+|++|.+++.. .+..+..|+++++ .+   +..+.+.           ++++++|+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~  305 (562)
T PRK05677        237 LQCRALMGSNLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKE-----------LGKWKFSGFV  305 (562)
T ss_pred             HHHHHHhccCCCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHH-----------HHHcCceEEe
Confidence            6555443 1233 3478899999999999865 5567778887666 22   2233333           9999999999


Q ss_pred             cchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCC
Q 005874          353 SVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPL  432 (672)
Q Consensus       353 ~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l  432 (672)
                      ++|.++..+......                                               +....+++|.+++||+++
T Consensus       306 ~~p~~~~~l~~~~~~-----------------------------------------------~~~~~~~lr~v~~gG~~~  338 (562)
T PRK05677        306 GLNTLFVALCNNEAF-----------------------------------------------RKLDFSALKLTLSGGMAL  338 (562)
T ss_pred             cHHHHHHHHHhCccc-----------------------------------------------ccCChhhceEEEEcCccC
Confidence            999999887652100                                               000113799999999999


Q ss_pred             CHHHHHHHHHHhCCceecccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcc
Q 005874          433 SADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNV  512 (672)
Q Consensus       433 ~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v  512 (672)
                      ++++.+.+++.+++++++.||+||++.+++.........+++|.|+++++++|+| +++..+   +.|+.|||+++|+++
T Consensus       339 ~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~~---~~g~~Gel~v~g~~~  414 (562)
T PRK05677        339 QLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTLCKVID-DDGNEL---PLGEVGELCVKGPQV  414 (562)
T ss_pred             CHHHHHHHHHHcCCCeeccCCccccCcceeecCccCCCCCccCccCCCCEEEEEC-CCCCCC---CCCCCeEEEEecCcc
Confidence            9999999999999999999999999877665555455567899999999999999 666654   478899999999999


Q ss_pred             cccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEec
Q 005874          513 TVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHAD  592 (672)
Q Consensus       513 ~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~  592 (672)
                      +.||+++|+.|++.|.    .+|||+|||+|++++||.+++.||++|+||++ |++|+|.+||+++.+||+|.+++|++.
T Consensus       415 ~~gY~~~~~~t~~~~~----~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~-G~~i~p~eiE~~l~~~~~v~~~~v~g~  489 (562)
T PRK05677        415 MKGYWQRPEATDEILD----SDGWLKTGDIALIQEDGYMRIVDRKKDMILVS-GFNVYPNELEDVLAALPGVLQCAAIGV  489 (562)
T ss_pred             chhhcCCchhhhhccC----CCCcccccceEEECCCCcEEEEecCcCeEEeC-CEEECHHHHHHHHHhCCCccEEEEEec
Confidence            9999999999999997    78999999999999999999999999999985 999999999999999999999999997


Q ss_pred             CCC---CeEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874          593 PFH---SYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD  666 (672)
Q Consensus       593 ~~~---~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~  666 (672)
                      +++   ..++++|++.+....+....  ...++++|+.|++|+.|++++..|      +|++||++|++|++.+.++
T Consensus       490 ~~~~~g~~~~~~v~~~~~~~~~~~~l--~~~~~~~l~~~~~P~~i~~v~~iP------~t~sGKi~r~~L~~~~~~~  558 (562)
T PRK05677        490 PDEKSGEAIKVFVVVKPGETLTKEQV--MEHMRANLTGYKVPKAVEFRDELP------TTNVGKILRRELRDEELKK  558 (562)
T ss_pred             cCccCCceEEEEEEeCCCCCCCHHHH--HHHHHHhhhhccCCcEEEEeccCC------CCCcccccHHHHHHHHHHh
Confidence            765   35788888654321111111  156678999999999999999987      9999999999999887654

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=5.1e-65  Score=566.94  Aligned_cols=499  Identities=23%  Similarity=0.310  Sum_probs=405.5

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF  137 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~  137 (672)
                      .|+.++|++.++.+|+++|+.+.+          ++       .++++.+||+||.++++++|.+|.+.|+++|++|+++
T Consensus        24 ~~l~~~l~~~a~~~p~~~A~~~~~----------~~-------~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~   86 (547)
T PRK13295         24 RTINDDLDACVASCPDKTAVTAVR----------LG-------TGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQ   86 (547)
T ss_pred             CCHHHHHHHHHHHCCCceEEEecC----------CC-------ccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            689999999999999999998631          11       2345689999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccc-----hHHHHhhhcCCCCccEEEEecCCC
Q 005874          138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKE-----LKKLVDLSGQLDTVKHVICMDANI  212 (672)
Q Consensus       138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~l~~~~~~~~~l~~ii~~~~~~  212 (672)
                      ++|++++++++|||+++|++++|+++.++.+++.+++++++++++++++..     .+.+.+.....+.++.++.++...
T Consensus        87 ~~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (547)
T PRK13295         87 LPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDG  166 (547)
T ss_pred             CCCChHHHHHHHHHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCC
Confidence            999999999999999999999999999999999999999999999998753     233344444556666777654432


Q ss_pred             cccccccccCCCeEEEeHHHHHhcc-----cC--CCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhh
Q 005874          213 PSAVSSVEQSGRWKITSFADVQILG-----RE--NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI  285 (672)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~  285 (672)
                      .              .++.++....     ..  .........++++++++|||||||.||+|+++|++++..+......
T Consensus       167 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~  232 (547)
T PRK13295        167 A--------------DSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAER  232 (547)
T ss_pred             c--------------cCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHH
Confidence            1              1233332111     00  0111233467899999999999999999999999999988887777


Q ss_pred             cCCCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeC---CcccccCchhhhhcccccccccccceeeecchHHHHHH
Q 005874          286 VPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG---TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRV  361 (672)
Q Consensus       286 ~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~---~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l  361 (672)
                      + .++++|++++.+|++|.+++.. .+.++..|+++++.   ++..+.+.           ++++++|++.++|.++..+
T Consensus       233 ~-~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------l~~~~vt~~~~~p~~~~~l  300 (547)
T PRK13295        233 L-GLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAEL-----------IRTEGVTFTMASTPFLTDL  300 (547)
T ss_pred             h-CCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHH-----------HHHcCCcEEEecHHHHHHH
Confidence            7 8899999999999999998766 67789999999983   44444444           9999999999999999888


Q ss_pred             HHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHH
Q 005874          362 RDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFIN  441 (672)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~  441 (672)
                      ........                                               ...+++|.+++||+++++++.++++
T Consensus       301 ~~~~~~~~-----------------------------------------------~~~~~l~~~~~~G~~l~~~~~~~~~  333 (547)
T PRK13295        301 TRAVKESG-----------------------------------------------RPVSSLRTFLCAGAPIPGALVERAR  333 (547)
T ss_pred             HhcccccC-----------------------------------------------CCcccceEEEEecCCCCHHHHHHHH
Confidence            75321110                                               1124799999999999999999999


Q ss_pred             HHhCCceecccCcccccccccccCCC--CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCC
Q 005874          442 ICLGAPIGQGYGLTETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKN  519 (672)
Q Consensus       442 ~~~~~~v~~~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~  519 (672)
                      +.+++++++.||+||++.+++.....  .....++|.|.++++++|+| +++..+   +.|+.|||+|+|++++.||+++
T Consensus       334 ~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d-~~~~~~---~~g~~Gel~v~g~~~~~gY~~~  409 (547)
T PRK13295        334 AALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVD-ADGAPL---PAGQIGRLQVRGCSNFGGYLKR  409 (547)
T ss_pred             HHhCCCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEEC-CCCCCC---CCCCCCeEEEEcCcccccccCC
Confidence            98899999999999998765544322  22346889999999999999 666554   4788999999999999999999


Q ss_pred             chhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---C
Q 005874          520 EEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---S  596 (672)
Q Consensus       520 ~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~  596 (672)
                      |+.|+..      .+|||+|||+|+++++|.+++.||.+|++|+ +|++|+|.+||+++.++++|.+++|++.+++   .
T Consensus       410 ~~~t~~~------~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~-~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~  482 (547)
T PRK13295        410 PQLNGTD------ADGWFDTGDLARIDADGYIRISGRSKDVIIR-GGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGE  482 (547)
T ss_pred             ccccccC------CCCCeecceEEEEcCCceEEEEeccCCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCc
Confidence            9988754      4579999999999999999999999999997 6999999999999999999999999997654   4


Q ss_pred             eEEEEEEcChhHHHHHHHHcChhhhh-cCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874          597 YCVALVVASQPAVEEWAAKQGIVGKN-ARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       597 ~~va~v~~~~~~~~~~~~~~~~~~~~-~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                      .++++|+++++...+....  ...+. ..|+.|++|+.+++++++|      +|++||++|++|++++.+
T Consensus       483 ~~~~~v~~~~~~~~~~~~l--~~~~~~~~l~~~~~P~~i~~v~~lP------~t~sgK~~r~~L~~~~~~  544 (547)
T PRK13295        483 RACAFVVPRPGQSLDFEEM--VEFLKAQKVAKQYIPERLVVRDALP------RTPSGKIQKFRLREMLRG  544 (547)
T ss_pred             EEEEEEEeCCCCCCCHHHH--HHHHHhccCccccCCcEEEEeccCC------CCCCccccHHHHHHHHhc
Confidence            6999999876432111111  13444 4799999999999999987      999999999999988754

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.8e-65  Score=566.72  Aligned_cols=513  Identities=25%  Similarity=0.303  Sum_probs=413.5

Q ss_pred             CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhc-CCCCCCEEE
Q 005874           57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQL-GHKKEERVA  135 (672)
Q Consensus        57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~-g~~~g~~V~  135 (672)
                      ..|+.++|.+.+..+|+++|+.+            +++           .+||+||.+++.++|.+|.+. |+++|++|+
T Consensus         9 ~~tl~~~l~~~a~~~~~~~a~~~------------~~~-----------~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~   65 (546)
T PRK08314          9 ETSLFHNLEVSARRYPDKTAIVF------------YGR-----------AISYRELLEEAERLAGYLQQECGVRKGDRVL   65 (546)
T ss_pred             CCCHHHHHHHHHHHcCCCcceee------------cCc-----------eecHHHHHHHHHHHHHHHHHhhCCCCCCEEE
Confidence            35899999999999999999986            333           699999999999999999999 999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCc--
Q 005874          136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIP--  213 (672)
Q Consensus       136 i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~--  213 (672)
                      ++++|+++++++++||+++|++++|+++..+.+++.++++.++++.+|++.+..+.+....... .++.++.......  
T Consensus        66 i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  144 (546)
T PRK08314         66 LYMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL-RLRHVIVAQYSDYLP  144 (546)
T ss_pred             EECCCChHHHHHHHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc-CcceEEEecchhhcc
Confidence            9999999999999999999999999999999999999999999999999998877666554433 2344443321100  


Q ss_pred             c-c---c-cccc------cCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHH
Q 005874          214 S-A---V-SSVE------QSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV  282 (672)
Q Consensus       214 ~-~---~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~  282 (672)
                      . .   . ....      ...+..+..|++......  ........++++++|+|||||||.||+|++||+++++.+...
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~  222 (546)
T PRK08314        145 AEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGL--APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGS  222 (546)
T ss_pred             cccccCcccccccccccccccccccccHHHHhcccC--CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHH
Confidence            0 0   0 0000      001123345666654322  122334567899999999999999999999999999998887


Q ss_pred             HhhcCCCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeCC---cccccCchhhhhcccccccccccceeeecchHHH
Q 005874          283 MTIVPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYGT---PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAIL  358 (672)
Q Consensus       283 ~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~~---~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l  358 (672)
                      ...+ .+..+|++++.+|++|.+++.. .+.++..|+++++.+   +..+...           ++++++|++.++|.++
T Consensus       223 ~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~~  290 (546)
T PRK08314        223 VLWS-NSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARL-----------IERYRVTHWTNIPTMV  290 (546)
T ss_pred             HHhh-CCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHH-----------HHHhcCceecccHHHH
Confidence            7777 8899999999999999999866 667899999999943   3333333           8999999999999999


Q ss_pred             HHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHH
Q 005874          359 DRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQR  438 (672)
Q Consensus       359 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~  438 (672)
                      ..+......                                               .....+++|.+++||+++++++.+
T Consensus       291 ~~ll~~~~~-----------------------------------------------~~~~~~~l~~~~~gG~~~~~~~~~  323 (546)
T PRK08314        291 VDFLASPGL-----------------------------------------------AERDLSSLRYIGGGGAAMPEAVAE  323 (546)
T ss_pred             HHHHhCCCc-----------------------------------------------cccCchhhheeeeccccCCHHHHH
Confidence            877642100                                               001113799999999999999999


Q ss_pred             HHHHHhCCceecccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccC
Q 005874          439 FINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFK  518 (672)
Q Consensus       439 ~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~  518 (672)
                      ++...++.++++.||+||++.............+++|.|.++++++|+|++++..+   +.|..|||+++|++++.||++
T Consensus       324 ~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~---~~g~~Gel~v~g~~~~~gY~~  400 (546)
T PRK08314        324 RLKELTGLDYVEGYGLTETMAQTHSNPPDRPKLQCLGIPTFGVDARVIDPETLEEL---PPGEVGEIVVHGPQVFKGYWN  400 (546)
T ss_pred             HHHHHcCCcEEecccccccccceecCCCcCCCCCccCcccCCeEEEEEeCCCCcCC---CCCCceEEEEECCchhccccC
Confidence            99998899999999999998776655444445678999999999999995556655   477899999999999999999


Q ss_pred             CchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---
Q 005874          519 NEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---  595 (672)
Q Consensus       519 ~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---  595 (672)
                      +++.+++.|.. .++++||+|||+|+++++|.+++.||+||+|++ +|++|+|.+||+++.++|+|.+++|++.++.   
T Consensus       401 ~~~~t~~~f~~-~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~  478 (546)
T PRK08314        401 RPEATAEAFIE-IDGKRFFRTGDLGRMDEEGYFFITDRLKRMINA-SGFKVWPAEVENLLYKHPAIQEACVIATPDPRRG  478 (546)
T ss_pred             ChhHhhhhhhh-cCCCceEecCCEEEEcCCCcEEEEecchhhEEe-CCEEECHHHHHHHHHhCcchheEEEEeCCCcccC
Confidence            99999888752 225679999999999999999999999999997 5999999999999999999999999997655   


Q ss_pred             CeEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874          596 SYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       596 ~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                      +.++++|+++++............+++++|+.|++|+.++++++.|      +|++||++|++|++..+.
T Consensus       479 ~~~~a~v~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP------~t~~GKv~r~~L~~~~~~  542 (546)
T PRK08314        479 ETVKAVVVLRPEARGKTTEEEIIAWAREHMAAYKYPRIVEFVDSLP------KSGSGKILWRQLQEQEKA  542 (546)
T ss_pred             ceeEEEEEECCCCCCCCCHHHHHHHHHHhcccCCCCcEEEEecCCC------CCCccceeHHHHHHHHhh
Confidence            4689999987653211101111166778999999999999999987      999999999999876554

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.3e-65  Score=568.77  Aligned_cols=504  Identities=24%  Similarity=0.279  Sum_probs=409.1

Q ss_pred             CCCHHHHHHHHHH-HcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 005874           57 ISTLAELFEQSCK-EHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA  135 (672)
Q Consensus        57 ~~tl~~~~~~~a~-~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~  135 (672)
                      .+.+++++.+.+. .+|+++|+.+.           ++.        ..+.+||+||.+++.++|.+|.++|+++|++|+
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~a~~~~-----------~~~--------~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~  102 (570)
T PRK04319         42 VNIAYEAIDRHADGGRKDKVALRYL-----------DAS--------RKEKYTYKELKELSNKFANVLKELGVEKGDRVF  102 (570)
T ss_pred             eeHHHHHHHHhhccCCCCceEEEEE-----------CCC--------CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEE
Confidence            3456788888877 58999999874           211        224799999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCccc
Q 005874          136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSA  215 (672)
Q Consensus       136 i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~  215 (672)
                      ++++|++++++++|||+++|++++|+++.++++++.++++.++++.++++......+..  ..++.++.++.+++.... 
T Consensus       103 i~~~n~~~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-  179 (570)
T PRK04319        103 IFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA--DDLPSLKHVLLVGEDVEE-  179 (570)
T ss_pred             EECCCCHHHHHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch--hcCCCceEEEEECCCcCC-
Confidence            99999999999999999999999999999999999999999999999999876543322  245566667666543210 


Q ss_pred             ccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEE
Q 005874          216 VSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY  295 (672)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~  295 (672)
                              .....++.++...... ........++++++++|||||||.||||+++|+++++.+......+ .++++|++
T Consensus       180 --------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-~~~~~d~~  249 (570)
T PRK04319        180 --------GPGTLDFNALMEQASD-EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVL-DLHEDDVY  249 (570)
T ss_pred             --------CcCccCHHHHHhhcCC-cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhc-CCCCCceE
Confidence                    1122456665543322 1222344678999999999999999999999999998887777777 88999999


Q ss_pred             EEecChHhHHHHHH-HHHHhHhCcEEee----CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhh
Q 005874          296 LAYLPLAHVLELVA-ENLIAGVGSAIGY----GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD  370 (672)
Q Consensus       296 l~~~pl~h~~~~~~-~~~~l~~G~~i~~----~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~  370 (672)
                      ++..|+.|.++... .+.++..|+++++    +++..+.+.           ++++++|+++++|.+++.+.+.......
T Consensus       250 ~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~  318 (570)
T PRK04319        250 WCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRI-----------LEDYKVTVWYTAPTAIRMLMGAGDDLVK  318 (570)
T ss_pred             EecCChHHhhCchHHHHHHHhcCceEEEECCCCCHHHHHHH-----------HHHcCCeEEEeCHHHHHHHHhcCCcccc
Confidence            99999999988655 7788999999988    344445444           9999999999999999988653111000


Q ss_pred             hcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceec
Q 005874          371 AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQ  450 (672)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~  450 (672)
                                                                   ....++||.+++||+++++++.++++..++.++++
T Consensus       319 ---------------------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~  353 (570)
T PRK04319        319 ---------------------------------------------KYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHD  353 (570)
T ss_pred             ---------------------------------------------cCCcccceEEEEcccCCCHHHHHHHHHHhCCCeEe
Confidence                                                         01123899999999999999999999999999999


Q ss_pred             ccCcccccccccccCCC-CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEcc--CcccccccCCchhhhhhc
Q 005874          451 GYGLTETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAG--PNVTVGYFKNEEKTKEVY  527 (672)
Q Consensus       451 ~YG~TE~~~~~~~~~~~-~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g--~~v~~gY~~~~~~t~~~~  527 (672)
                      .||+||+++.++..... ....+++|.|.|+++++|+| +++..+   ++|+.|||+++|  ++++.||+++++.+++.|
T Consensus       354 ~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~---~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~  429 (570)
T PRK04319        354 NWWMTETGGIMIANYPAMDIKPGSMGKPLPGIEAAIVD-DQGNEL---PPNRMGNLAIKKGWPSMMRGIWNNPEKYESYF  429 (570)
T ss_pred             ceeecccCCEEEecCCCCCCCCCcCcCCCCCCEEEEEC-CCCCCC---CCCCceEEEEcCCCChHHhHhcCCHHHhhhhh
Confidence            99999998765443322 34568999999999999999 666554   578999999997  899999999999999988


Q ss_pred             ccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEc
Q 005874          528 KVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVA  604 (672)
Q Consensus       528 ~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~  604 (672)
                           .+|||+|||+|++++||.++++||++|+||. +|++|+|.+||+++.+||.|.+++|++.+++   +.++++|++
T Consensus       430 -----~~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~  503 (570)
T PRK04319        430 -----AGDWYVSGDSAYMDEDGYFWFQGRVDDVIKT-SGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVAL  503 (570)
T ss_pred             -----cCCceEeCcEEEECCCeeEEEEecCCCEEEE-CCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEE
Confidence                 5789999999999999999999999999997 6999999999999999999999999997765   458888887


Q ss_pred             ChhHHH-HHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHH
Q 005874          605 SQPAVE-EWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFA  664 (672)
Q Consensus       605 ~~~~~~-~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~  664 (672)
                      .++... +...+.....++++|+.|++|+.++++++.|      +|++||++|++|+++..
T Consensus       504 ~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP------~t~~GKv~r~~L~~~~~  558 (570)
T PRK04319        504 RPGYEPSEELKEEIRGFVKKGLGAHAAPREIEFKDKLP------KTRSGKIMRRVLKAWEL  558 (570)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhcccccCCcEEEEeCCCC------CCCchhhhHHHHHHHHh
Confidence            764321 1111122266778999999999999999987      99999999999998753

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=5.2e-64  Score=557.81  Aligned_cols=501  Identities=25%  Similarity=0.299  Sum_probs=405.6

Q ss_pred             cCCCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCC
Q 005874           53 SWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEE  132 (672)
Q Consensus        53 ~~~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~  132 (672)
                      .+++..|+.+++.++++++|+++|+.+.+          +++           .+||.||.++++++|++|.+.|+++|+
T Consensus        18 ~~~~~~~~~~~l~~~~~~~~~~~a~~~~~----------~~~-----------~~ty~el~~~~~~la~~L~~~g~~~gd   76 (537)
T PLN02246         18 YIPNHLPLHDYCFERLSEFSDRPCLIDGA----------TGR-----------VYTYADVELLSRRVAAGLHKLGIRQGD   76 (537)
T ss_pred             CCCCCCcHHHHHHHHHHhCCCCeEEEecC----------CCc-----------eeeHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            44666789999999999999999997521          233           799999999999999999999999999


Q ss_pred             EEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCC
Q 005874          133 RVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANI  212 (672)
Q Consensus       133 ~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~  212 (672)
                      +|+++++|+++++++++||+++|++++|+++.++.+++..+++.++++++|+++...+.+.+.... +.+ .++.++...
T Consensus        77 ~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~~~-~~i~~~~~~  154 (537)
T PLN02246         77 VVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED-DGV-TVVTIDDPP  154 (537)
T ss_pred             EEEEECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc-CCc-eEEEeCCCC
Confidence            999999999999999999999999999999999999999999999999999998877766655332 222 344444321


Q ss_pred             cccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHh----hcCC
Q 005874          213 PSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT----IVPD  288 (672)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~  288 (672)
                      .            ....+.++..... ...+.....++++++++|||||||.||||+++|++++..+.....    .+ .
T Consensus       155 ~------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~-~  220 (537)
T PLN02246        155 E------------GCLHFSELTQADE-NELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNL-Y  220 (537)
T ss_pred             C------------CceeHHHHhcCCC-CCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhcccccc-C
Confidence            1            1233444443221 122233456789999999999999999999999999987765443    34 6


Q ss_pred             CCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeC---CcccccCchhhhhcccccccccccceeeecchHHHHHHHHH
Q 005874          289 LGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG---TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDG  364 (672)
Q Consensus       289 ~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~---~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~  364 (672)
                      +..+|++++.+|++|.+++.. .+.++..|+++++.   ++..+.+.           ++++++|++.++|.++..|.+.
T Consensus       221 ~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~~~~l~~~  289 (537)
T PLN02246        221 FHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLEL-----------IQRHKVTIAPFVPPIVLAIAKS  289 (537)
T ss_pred             CCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHH-----------HHHhCceEEEcchHHHHHHhcC
Confidence            889999999999999999866 55679999999993   33334443           9999999999999999887652


Q ss_pred             HHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh
Q 005874          365 VRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL  444 (672)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~  444 (672)
                      ....                                               ....+++|.+++||+++++++.+.+++.+
T Consensus       290 ~~~~-----------------------------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~  322 (537)
T PLN02246        290 PVVE-----------------------------------------------KYDLSSIRMVLSGAAPLGKELEDAFRAKL  322 (537)
T ss_pred             cccc-----------------------------------------------ccCccceeEEEEecCcCCHHHHHHHHHHc
Confidence            1100                                               01113799999999999999999999987


Q ss_pred             -CCceecccCcccccccccccC-----CCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccC
Q 005874          445 -GAPIGQGYGLTETCAGGTFSE-----VDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFK  518 (672)
Q Consensus       445 -~~~v~~~YG~TE~~~~~~~~~-----~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~  518 (672)
                       ++.+++.||+||++.+++...     ......+++|.|+++++++|+|.+++..+   +.|+.|||+++|+.++.||++
T Consensus       323 ~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~---~~g~~Gel~v~g~~~~~GY~~  399 (537)
T PLN02246        323 PNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASL---PRNQPGEICIRGPQIMKGYLN  399 (537)
T ss_pred             CCCeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcC---CCCCceEEEEECCchhccccC
Confidence             678999999999986544321     11234578999999999999994455544   578899999999999999999


Q ss_pred             CchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---
Q 005874          519 NEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---  595 (672)
Q Consensus       519 ~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---  595 (672)
                      +++.+++.++    .+|||+|||+|++++||.+++.||.+|+||+ +|++|+|.+||+++.+||+|.+++|++..++   
T Consensus       400 ~~~~~~~~~~----~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~  474 (537)
T PLN02246        400 DPEATANTID----KDGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLISHPSIADAAVVPMKDEVAG  474 (537)
T ss_pred             Cchhhhhccc----CCCCeeecceEEEeCCCeEEEEecccceEEE-CCEEECcHHHHHHHHhCCCeeEEEEEcccCccCC
Confidence            9999999887    7899999999999999999999999999997 5999999999999999999999999997655   


Q ss_pred             CeEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHH
Q 005874          596 SYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFA  664 (672)
Q Consensus       596 ~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~  664 (672)
                      ..+++++++.++.......  ....++++|+.|++|+.+.++++.|      +|++||++|++|++++.
T Consensus       475 ~~~~~~v~~~~~~~~~~~~--l~~~l~~~l~~~~~p~~i~~~~~~P------~t~~GKi~r~~L~~~~~  535 (537)
T PLN02246        475 EVPVAFVVRSNGSEITEDE--IKQFVAKQVVFYKRIHKVFFVDSIP------KAPSGKILRKDLRAKLA  535 (537)
T ss_pred             ceeEEEEEeCCCCCCCHHH--HHHHHHhhCcCccccceEEEeccCC------CCCcchhhHHHHHHHHh
Confidence            3588888877543111111  1155678999999999999999887      99999999999998875

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.2e-64  Score=560.46  Aligned_cols=506  Identities=24%  Similarity=0.285  Sum_probs=395.1

Q ss_pred             cCCCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCC
Q 005874           53 SWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEE  132 (672)
Q Consensus        53 ~~~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~  132 (672)
                      ..+...|+.++|++.++++|+++|+.+.           ++          .+.+||+||.++++++|++|.+.|+++|+
T Consensus        11 ~~~~~~~l~~~l~~~a~~~p~~~ai~~~-----------~~----------~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd   69 (534)
T PRK05852         11 ASDFGPRIADLVEVAATRLPEAPALVVT-----------AD----------RIAISYRDLARLVDDLAGQLTRSGLLPGD   69 (534)
T ss_pred             hhhhcccHHHHHHHHHHhCCCCcEEEec-----------CC----------CCcccHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            3467789999999999999999999863           21          13699999999999999999999999999


Q ss_pred             EEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCC
Q 005874          133 RVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANI  212 (672)
Q Consensus       133 ~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~  212 (672)
                      +|+|+++|++++++++|||+++|++++|+++.++.+.+.++++.++++.+|++.............  .....+.+....
T Consensus        70 ~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~  147 (534)
T PRK05852         70 RVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTR--WWPLTVNVGGDS  147 (534)
T ss_pred             EEEEECCCcHHHHHHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhcccccc--ccceeeeecccc
Confidence            999999999999999999999999999999999999999999999999999987533211110000  001111111100


Q ss_pred             cccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCC
Q 005874          213 PSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSK  292 (672)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~  292 (672)
                      ...       .+.....+.+..  .............++.++++|||||||.||||+++|+++.+.+......+ .++.+
T Consensus       148 ~~~-------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~-~~~~~  217 (534)
T PRK05852        148 GPS-------GGTLSVHLDAAT--EPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-RLSPR  217 (534)
T ss_pred             ccc-------cccccccccccc--CCCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-CCCCc
Confidence            000       000000000000  00000111122356789999999999999999999999999988888888 89999


Q ss_pred             cEEEEecChHhHHHHHH-HHHHhHhCcEEeeC-----CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHH
Q 005874          293 DVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG-----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVR  366 (672)
Q Consensus       293 d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~-----~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~  366 (672)
                      |++++.+|++|.+++.. .+.++..|+++++.     ++..+++.           ++++++|+++++|.++..|.+...
T Consensus       218 d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~  286 (534)
T PRK05852        218 DATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDD-----------IKAVGATWYTAVPTIHQILLERAA  286 (534)
T ss_pred             ceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHH-----------HHHcCCcEEEcChHHHHHHHhhcc
Confidence            99999999999999877 66678899988872     33344444           999999999999999998876432


Q ss_pred             HhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCC
Q 005874          367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGA  446 (672)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~  446 (672)
                      ....                                             ....+++|.++++|+++++++.+.+...+++
T Consensus       287 ~~~~---------------------------------------------~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~  321 (534)
T PRK05852        287 TEPS---------------------------------------------GRKPAALRFIRSCSAPLTAETAQALQTEFAA  321 (534)
T ss_pred             cccc---------------------------------------------cccCCCeeEEEECCCCCCHHHHHHHHHHhCC
Confidence            1100                                             0012489999999999999999999999999


Q ss_pred             ceecccCcccccccccccCCC-----CCCCCccCCC--cCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCC
Q 005874          447 PIGQGYGLTETCAGGTFSEVD-----DSSVGRVGAP--LPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKN  519 (672)
Q Consensus       447 ~v~~~YG~TE~~~~~~~~~~~-----~~~~~~~G~p--~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~  519 (672)
                      +++++||+||++..++.....     .....++|.+  .++++++|+| +++..+   ++|+.|||+++|+.++.||+++
T Consensus       322 ~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~i~d-~~g~~~---~~g~~Gel~v~g~~v~~gY~~~  397 (534)
T PRK05852        322 PVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIVG-SDGLPL---PAGAVGEVWLRGTTVVRGYLGD  397 (534)
T ss_pred             ChhhccCccccchhhhcCCccccccccCcccccccCCCCCCCeEEEEC-CCCCCC---CCCCceEEEEecCcccchhcCC
Confidence            999999999998765543321     1111234444  6999999999 666654   4788999999999999999999


Q ss_pred             chhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---C
Q 005874          520 EEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---S  596 (672)
Q Consensus       520 ~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~  596 (672)
                      ++.|++.|     .+|||+|||+|++|+||.+++.||++|+||. +|.+|+|.+||+++.++|+|.+|+|++.+++   .
T Consensus       398 ~~~t~~~~-----~~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~-~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~  471 (534)
T PRK05852        398 PTITAANF-----TDGWLRTGDLGSLSAAGDLSIRGRIKELINR-GGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGE  471 (534)
T ss_pred             cccchhhh-----cCCCcccCceEEEeCCCcEEEEecchhhEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCc
Confidence            99999988     6789999999999999999999999999996 6999999999999999999999999998765   3


Q ss_pred             eEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874          597 YCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       597 ~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                      .++++|++++....+...  ....++++|+.|++|+.+.+++..|      +|++||++|++|+++|..
T Consensus       472 ~~~~~vv~~~~~~~~~~~--i~~~~~~~l~~~~~P~~i~~v~~iP------~t~~GKi~r~~L~~~~~~  532 (534)
T PRK05852        472 AVAAVIVPRESAPPTAEE--LVQFCRERLAAFEIPASFQEASGLP------HTAKGSLDRRAVAEQFGH  532 (534)
T ss_pred             eEEEEEEECCCCCCCHHH--HHHHHHHhcccccCCeEEEEhhhcC------CCCCccccHHHHHHHhcc
Confidence            588888876543111111  1155678899999999999999987      999999999999998864

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=5.9e-64  Score=556.83  Aligned_cols=495  Identities=24%  Similarity=0.277  Sum_probs=404.2

Q ss_pred             CCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 005874           56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA  135 (672)
Q Consensus        56 ~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~  135 (672)
                      ...|+.++|++.++++||++|+..            +++           .+||+||.+++.++|..|.+.|+++|++|+
T Consensus        19 ~~~~l~~~l~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~v~~la~~L~~~gi~~g~~V~   75 (542)
T PRK06155         19 SERTLPAMLARQAERYPDRPLLVF------------GGT-----------RWTYAEAARAAAAAAHALAAAGVKRGDRVA   75 (542)
T ss_pred             cccCHHHHHHHHHHHCCCCeEEEe------------CCc-----------cccHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            457899999999999999999986            333           699999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCccc
Q 005874          136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSA  215 (672)
Q Consensus       136 i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~  215 (672)
                      ++++|+++++++++||+++|++++|+++.++.+++.+++++++++.++++.+....+.+.......++.++.++......
T Consensus        76 v~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (542)
T PRK06155         76 LMCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVS  155 (542)
T ss_pred             EECCCChHHHHHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCccccc
Confidence            99999999999999999999999999999999999999999999999999988777766544444455666655432100


Q ss_pred             ccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEE
Q 005874          216 VSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY  295 (672)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~  295 (672)
                           ....+...   ++.  ............++++++|+|||||||.||+|+++|+++.+........+ .++++|++
T Consensus       156 -----~~~~~~~~---~~~--~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~-~~~~~~~~  224 (542)
T PRK06155        156 -----VPAGWSTA---PLP--PLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL-EIGADDVL  224 (542)
T ss_pred             -----cccccchh---hhc--ccCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhc-CCCCCCEE
Confidence                 00011111   111  11111122334678999999999999999999999999988877777777 89999999


Q ss_pred             EEecChHhHHHHHHHHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhc
Q 005874          296 LAYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAK  372 (672)
Q Consensus       296 l~~~pl~h~~~~~~~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~  372 (672)
                      ++.+|++|..++...+.++..|+++++   +++..+++.           ++++++|++.++|.++..|.+......   
T Consensus       225 l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------l~~~~~t~~~~~p~~~~~l~~~~~~~~---  290 (542)
T PRK06155        225 YTTLPLFHTNALNAFFQALLAGATYVLEPRFSASGFWPA-----------VRRHGATVTYLLGAMVSILLSQPARES---  290 (542)
T ss_pred             EEecCHHHHHHHHHHHHHHHcCceEEeeCCCCHHHHHHH-----------HHHhCCcEEEchHHHHHHHHcCcCccc---
Confidence            999999999999888889999999998   344445554           999999999999999988765321100   


Q ss_pred             CchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceeccc
Q 005874          373 GGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGY  452 (672)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~Y  452 (672)
                                                                  ...+++|.++.||  +++++.+.+++.+++++++.|
T Consensus       291 --------------------------------------------~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~Y  324 (542)
T PRK06155        291 --------------------------------------------DRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGY  324 (542)
T ss_pred             --------------------------------------------cccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeee
Confidence                                                        0113788877666  568888999998999999999


Q ss_pred             CcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccC---cccccccCCchhhhhhccc
Q 005874          453 GLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP---NVTVGYFKNEEKTKEVYKV  529 (672)
Q Consensus       453 G~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~---~v~~gY~~~~~~t~~~~~~  529 (672)
                      |+||++..+.... .....+++|.|.++++++|+| +++..+   +.|..|||+++|+   +++.||+++++.+++.|  
T Consensus       325 G~tE~~~~~~~~~-~~~~~~~vG~~~~~~~~~i~d-~~~~~~---~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~--  397 (542)
T PRK06155        325 GSTETNFVIAVTH-GSQRPGSMGRLAPGFEARVVD-EHDQEL---PDGEPGELLLRADEPFAFATGYFGMPEKTVEAW--  397 (542)
T ss_pred             cccccCccccCCC-CCCCCCCcCccCCCceEEEEC-CCCCCC---CCCCceEEEEecCCccccchhhcCCHHHHHHhh--
Confidence            9999987665432 344568899999999999999 666654   4788999999998   69999999999999888  


Q ss_pred             CCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcCh
Q 005874          530 DDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQ  606 (672)
Q Consensus       530 ~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~  606 (672)
                         .++||+|||+|++++||.++++||.+|+|+. +|++|+|++||+++.++|+|.+++|++.+++   ..+++++++..
T Consensus       398 ---~~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~  473 (542)
T PRK06155        398 ---RNLWFHTGDRVVRDADGWFRFVDRIKDAIRR-RGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRD  473 (542)
T ss_pred             ---cCCcEeccceEEEcCCceEEEEecCCCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECC
Confidence               6899999999999999999999999999996 6999999999999999999999999997754   45778888765


Q ss_pred             hHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHH
Q 005874          607 PAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAF  663 (672)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~  663 (672)
                      +...+....  ...+.++|+.+++|..|+++++.|      +|++||++|++|++++
T Consensus       474 ~~~~~~~~~--~~~~~~~l~~~~~P~~i~~~~~iP------~t~~GKi~r~~l~~~~  522 (542)
T PRK06155        474 GTALEPVAL--VRHCEPRLAYFAVPRYVEFVAALP------KTENGKVQKFVLREQG  522 (542)
T ss_pred             CCCCCHHHH--HHHHHhhCcCccCCcEEEEeccCC------CCcccceeHHHHHhhc
Confidence            432221111  156678999999999999999887      9999999999999876

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.7e-64  Score=566.83  Aligned_cols=522  Identities=19%  Similarity=0.214  Sum_probs=398.9

Q ss_pred             HHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcC
Q 005874           60 LAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFAD  139 (672)
Q Consensus        60 l~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~  139 (672)
                      .+++|++.++.+|+++|+.+..           ..      .+..+.+||+||.++++++|++|+++|+++||+|+++++
T Consensus        55 ~~~~l~~~~~~~p~~~A~~~~~-----------~~------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~  117 (629)
T PRK10524         55 CHNAVDRHLAKRPEQLALIAVS-----------TE------TDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMP  117 (629)
T ss_pred             HHHHHHHhhccCCCCeEEEEEc-----------CC------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECC
Confidence            6888988888899999998731           11      123467999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccc---------hHHHHhhhcCC-CCccEEEEec
Q 005874          140 TRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKE---------LKKLVDLSGQL-DTVKHVICMD  209 (672)
Q Consensus       140 ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~l~~~~~~~-~~l~~ii~~~  209 (672)
                      |+++++++++||+++|++++|+++.++.+++.+++++++++++|+++..         .+.+.+..... +....++.++
T Consensus       118 n~~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~  197 (629)
T PRK10524        118 MIAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVD  197 (629)
T ss_pred             CCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEe
Confidence            9999999999999999999999999999999999999999999997642         23333333222 2344555554


Q ss_pred             CCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHH-HhhcCC
Q 005874          210 ANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV-MTIVPD  288 (672)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~~~~  288 (672)
                      ...... ..    .......+.++.........+.....++++++|+|||||||.||||+++|.+++...... ...+ +
T Consensus       198 ~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~-~  271 (629)
T PRK10524        198 RGLAPM-AR----VAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIF-G  271 (629)
T ss_pred             CCCCCc-Cc----ccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhc-C
Confidence            321100 00    011123466654432222222233467899999999999999999999999986554443 3344 8


Q ss_pred             CCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHH
Q 005874          289 LGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRK  367 (672)
Q Consensus       289 ~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~  367 (672)
                      ++++|++++.+|+.|..+... .+.++..|+++++.+......+    ...+...++++++|+++++|++++.|.+....
T Consensus       272 ~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  347 (629)
T PRK10524        272 GKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPD----AGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPA  347 (629)
T ss_pred             CCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCC----hHHHHHHHHHcCceEEEeCHHHHHHHHhcCcc
Confidence            899999999999999988654 6778999999988322111111    11122338999999999999999877552110


Q ss_pred             hhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCc
Q 005874          368 KVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAP  447 (672)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~  447 (672)
                      .                                             .+....++||.+++||+++++++.+++.+.++++
T Consensus       348 ~---------------------------------------------~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~  382 (629)
T PRK10524        348 L---------------------------------------------LRKHDLSSLRALFLAGEPLDEPTASWISEALGVP  382 (629)
T ss_pred             c---------------------------------------------ccccChhheeEEEEeCCCCCHHHHHHHHHhcCCC
Confidence            0                                             0011124899999999999999999999999999


Q ss_pred             eecccCcccccccccccCC----CCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccC---cccccccCCc
Q 005874          448 IGQGYGLTETCAGGTFSEV----DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP---NVTVGYFKNE  520 (672)
Q Consensus       448 v~~~YG~TE~~~~~~~~~~----~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~---~v~~gY~~~~  520 (672)
                      +++.||+||++........    .....+++|.|+++++++|+|.+++..+   +.|+.|||+++||   +++.||++++
T Consensus       383 v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~---~~g~~Gel~i~gp~~~~~~~~~~~~~  459 (629)
T PRK10524        383 VIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPC---GPNEKGVLVIEGPLPPGCMQTVWGDD  459 (629)
T ss_pred             eEeccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCC---CCCCcEEEEEcCCCChhhcCCccCCh
Confidence            9999999999743322211    1234578999999999999993366654   4788999999998   5789999999


Q ss_pred             hhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---Ce
Q 005874          521 EKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SY  597 (672)
Q Consensus       521 ~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~  597 (672)
                      +.+.+.+.... .+|||+|||+|++|+||.++++||.||+||++ |++|+|.+||++|.+||+|.+++|++.+++   +.
T Consensus       460 ~~~~~~~~~~~-~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~-G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~  537 (629)
T PRK10524        460 DRFVKTYWSLF-GRQVYSTFDWGIRDADGYYFILGRTDDVINVA-GHRLGTREIEESISSHPAVAEVAVVGVKDALKGQV  537 (629)
T ss_pred             HHHHHhhhccC-CCcEEEcCCcEEEcCCCcEEEEEEecCeEEeC-CEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeE
Confidence            88776554222 46899999999999999999999999999985 999999999999999999999999998766   46


Q ss_pred             EEEEEEcChhHHH------HHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHH
Q 005874          598 CVALVVASQPAVE------EWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFA  664 (672)
Q Consensus       598 ~va~v~~~~~~~~------~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~  664 (672)
                      ++++|+++++...      ....+.....++++|+.+++|+.|++++..|      +|++||++|+.|++.+.
T Consensus       538 ~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP------~T~sGKi~R~~L~~~~~  604 (629)
T PRK10524        538 AVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALP------KTRSGKLLRRAIQAIAE  604 (629)
T ss_pred             EEEEEEECCCCccccccchHHHHHHHHHHHHhhcCCCcCCCEEEEcCCCC------CCCCcchHHHHHHHHHc
Confidence            8999998764311      0111122266778999999999999999887      99999999999998764

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=2e-64  Score=563.14  Aligned_cols=498  Identities=26%  Similarity=0.330  Sum_probs=392.5

Q ss_pred             HHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEc
Q 005874           60 LAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQ-LGHKKEERVAIFA  138 (672)
Q Consensus        60 l~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~-~g~~~g~~V~i~~  138 (672)
                      +..+|.+  +.+|+++|+....          .+           ..+||+||.++++++|.+|.+ .|+++||+|++++
T Consensus        43 ~~~l~~~--~~~~~~~a~~~~~----------~~-----------~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~   99 (560)
T PLN02574         43 VSFIFSH--HNHNGDTALIDSS----------TG-----------FSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLL   99 (560)
T ss_pred             HHHHhcC--cccCCCCEEEECC----------CC-----------CcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEC
Confidence            4556655  6799999998521          12           258999999999999999999 8999999999999


Q ss_pred             CCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccccc
Q 005874          139 DTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSS  218 (672)
Q Consensus       139 ~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~  218 (672)
                      +|++++++++|||+++|++++|++|..+.+++.++++.++++.+|++.+..+.+...     ... ++.++......   
T Consensus       100 ~n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~---  170 (560)
T PLN02574        100 PNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL-----GVP-VIGVPENYDFD---  170 (560)
T ss_pred             CCcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc-----CCc-EEecCcccccc---
Confidence            999999999999999999999999999999999999999999999998766655432     111 22222110000   


Q ss_pred             cccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhh----cCCCCCCcE
Q 005874          219 VEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI----VPDLGSKDV  294 (672)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~----~~~~~~~d~  294 (672)
                        . .......|.++...... ..+.....++++++++|||||||.||||++||+++++.+..+...    +.....+++
T Consensus       171 --~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (560)
T PLN02574        171 --S-KRIEFPKFYELIKEDFD-FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNV  246 (560)
T ss_pred             --c-CccCcccHHHHhhcCCc-ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcE
Confidence              0 00112235554433221 112233457899999999999999999999999999887765432    212346789


Q ss_pred             EEEecChHhHHHHHH-HHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhh
Q 005874          295 YLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD  370 (672)
Q Consensus       295 ~l~~~pl~h~~~~~~-~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~  370 (672)
                      +++.+|++|.+++.. .+.++..|+++++   +++..+.+.           ++++++|++.++|.++..+.+.....  
T Consensus       247 ~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~--  313 (560)
T PLN02574        247 YLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKV-----------IDRFKVTHFPVVPPILMALTKKAKGV--  313 (560)
T ss_pred             EEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHH-----------HHHcCCeEEecCCHHHHHHHhCcccc--
Confidence            999999999999876 4566788999988   444445554           99999999999999999887632110  


Q ss_pred             hcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCcee
Q 005874          371 AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIG  449 (672)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~  449 (672)
                                                                  .....+++|.+++||+++++++.+.++..+ +++++
T Consensus       314 --------------------------------------------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~  349 (560)
T PLN02574        314 --------------------------------------------CGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFI  349 (560)
T ss_pred             --------------------------------------------ccCccccceEEEEecccCCHHHHHHHHHHCCCCcEE
Confidence                                                        001124899999999999999999998887 78999


Q ss_pred             cccCcccccccccccCC--CCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhc
Q 005874          450 QGYGLTETCAGGTFSEV--DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVY  527 (672)
Q Consensus       450 ~~YG~TE~~~~~~~~~~--~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~  527 (672)
                      +.||+||++..++....  .....+++|.|.++++++|+|++++..+   +.|+.|||||+|++++.||+++++.|.+.|
T Consensus       350 ~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~---~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~  426 (560)
T PLN02574        350 QGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLL---PPGNCGELWIQGPGVMKGYLNNPKATQSTI  426 (560)
T ss_pred             ecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCC---CCCCCeEEEEECcchhhhhcCChhHhhhhc
Confidence            99999999865543222  1234578999999999999995566544   478899999999999999999999999988


Q ss_pred             ccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEc
Q 005874          528 KVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVA  604 (672)
Q Consensus       528 ~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~  604 (672)
                      +    .+|||+|||+|++++||.++++||++|+||+ +|++|+|.+||++|.+||+|.+++|++.+++   +.++++|++
T Consensus       427 ~----~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~  501 (560)
T PLN02574        427 D----KDGWLRTGDIAYFDEDGYLYIVDRLKEIIKY-KGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVR  501 (560)
T ss_pred             c----CCCCcccceEEEEECCCeEEEEecchhheEE-CCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEe
Confidence            7    7899999999999999999999999999998 5999999999999999999999999997654   358899987


Q ss_pred             ChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874          605 SQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD  666 (672)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~  666 (672)
                      +++...+...  ....++++|+.|+.|+.+.++++.|      +|++||++|+.|++++.+.
T Consensus       502 ~~~~~~~~~~--l~~~~~~~l~~~~~p~~v~~v~~iP------~t~~GKi~r~~L~~~~~~~  555 (560)
T PLN02574        502 RQGSTLSQEA--VINYVAKQVAPYKKVRKVVFVQSIP------KSPAGKILRRELKRSLTNS  555 (560)
T ss_pred             CCCCCCCHHH--HHHHHHHhccCcccCcEEEEeeccC------CCCcchhhHHHHHHHHhhc
Confidence            6543211111  1156678999999999999999987      9999999999999988653

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.9e-64  Score=554.71  Aligned_cols=499  Identities=27%  Similarity=0.357  Sum_probs=416.5

Q ss_pred             CCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 005874           56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA  135 (672)
Q Consensus        56 ~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~  135 (672)
                      ...++.++|++.++.+|+++|+.+            +++           .+||+||.+.+.++|..|.+.|+++|++|+
T Consensus         3 ~~~~i~~~l~~~~~~~~~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~   59 (513)
T PRK07656          3 EWMTLPELLARAARRFGDKEAYVF------------GDQ-----------RLTYAELNARVRRAAAALAALGIGKGDRVA   59 (513)
T ss_pred             ccccHHHHHHHHHHHCCCCeEEEe------------CCC-----------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            347899999999999999999987            444           699999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCccc
Q 005874          136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSA  215 (672)
Q Consensus       136 i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~  215 (672)
                      ++++|+++++++++||+++|++++|+++..+.+.+..++++++++++++++.....+......++.++.++.........
T Consensus        60 l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (513)
T PRK07656         60 IWAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDP  139 (513)
T ss_pred             EECCCChHHHHHHHHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCccccc
Confidence            99999999999999999999999999999999999999999999999999987776666655666677766654432211


Q ss_pred             ccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEE
Q 005874          216 VSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY  295 (672)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~  295 (672)
                             ......+|+++...... ........++++++++|||||||.||+|.++|+++.+.+..+...+ .++++|++
T Consensus       140 -------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~  210 (513)
T PRK07656        140 -------HTEKMKTFTDFLAAGDP-AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-GLTEGDRY  210 (513)
T ss_pred             -------CccccccHHHHHhcCCC-CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh-CCCCCCeE
Confidence                   01123457777654332 1223445778999999999999999999999999999888877777 89999999


Q ss_pred             EEecChHhHHHHHH-HHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhh
Q 005874          296 LAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDA  371 (672)
Q Consensus       296 l~~~pl~h~~~~~~-~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~  371 (672)
                      ++.+|++|.+++.. .+.++..|+++++   .++..+.+.           ++++++|++.++|.++..+.+......  
T Consensus       211 ~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~~~~l~~~~~~~~--  277 (513)
T PRK07656        211 LAANPFFHVFGYKAGVNAPLMRGATILPLPVFDPDEVFRL-----------IETERITVLPGPPTMYNSLLQHPDRSA--  277 (513)
T ss_pred             EEccchHHHHHHHHHHHHHHHcCceEEecCcCCHHHHHHH-----------HHHhCCeEEechHHHHHHHHcCCCcCC--
Confidence            99999999999876 6778999999988   344444444           999999999999999999876322110  


Q ss_pred             cCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCC-ceec
Q 005874          372 KGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGA-PIGQ  450 (672)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~v~~  450 (672)
                                                                   ...+++|.+++||+++++++.+.++..+++ ++++
T Consensus       278 ---------------------------------------------~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~  312 (513)
T PRK07656        278 ---------------------------------------------EDLSSLRLAVTGAASMPVALLERFESELGVDIVLT  312 (513)
T ss_pred             ---------------------------------------------CCccceeeEEecCCCCCHHHHHHHHHHcCCCceEe
Confidence                                                         011389999999999999999999999988 8999


Q ss_pred             ccCcccccccccccCCCCC-C--CCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhc
Q 005874          451 GYGLTETCAGGTFSEVDDS-S--VGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVY  527 (672)
Q Consensus       451 ~YG~TE~~~~~~~~~~~~~-~--~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~  527 (672)
                      .||+||++++++....... .  .+++|.|+++++++|+| +++..+   +.|..|||+++|+.++.||++++..+...+
T Consensus       313 ~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~---~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~  388 (513)
T PRK07656        313 GYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVN-ELGEEV---PVGEVGELLVRGPNVMKGYYDDPEATAAAI  388 (513)
T ss_pred             EEccccCCCceeecCccccccccCCCccccCCCcEEEEEC-CCCCCC---CCCCceEEEEEcchhhhhhcCCHHHHhhhh
Confidence            9999999877766544332 2  57899999999999999 666554   478899999999999999999999998888


Q ss_pred             ccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEc
Q 005874          528 KVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVA  604 (672)
Q Consensus       528 ~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~  604 (672)
                      .    ++|||+|||+|++++||.++++||.+|+|++ +|++++|.+||+++.++++|.+++|++..++   ..++++|++
T Consensus       389 ~----~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~  463 (513)
T PRK07656        389 D----ADGWLHTGDLGRLDEEGYLYIVDRKKDMFIV-GGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVL  463 (513)
T ss_pred             c----cCCceeccceEEEcCCeeEEEEecccceEEe-CCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEE
Confidence            5    6899999999999999999999999999997 6999999999999999999999999997654   357888887


Q ss_pred             ChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHH
Q 005874          605 SQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRK  661 (672)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~  661 (672)
                      ++....+...  ....+++.|+.+++|..+.++++.|      +|++||++|++|++
T Consensus       464 ~~~~~~~~~~--l~~~~~~~l~~~~~p~~i~~v~~iP------~t~~gK~~r~~l~~  512 (513)
T PRK07656        464 KPGAELTEEE--LIAYCREHLAKYKVPRSIEFLDELP------KNATGKVLKRALRE  512 (513)
T ss_pred             CCCCCCCHHH--HHHHHHhhcccccCCCEEEEecCCC------CCCccceeHHHHhc
Confidence            7522111111  1155668899999999999999887      99999999999975

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.8e-64  Score=557.27  Aligned_cols=487  Identities=20%  Similarity=0.196  Sum_probs=397.3

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF  137 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~  137 (672)
                      .++.++|.+.++++||++|+..            +++           .+||+||.++++++|.+|.++|+++|++|+++
T Consensus        43 ~~~~~~l~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~   99 (537)
T PRK13382         43 MGPTSGFAIAAQRCPDRPGLID------------ELG-----------TLTWRELDERSDALAAALQALPIGEPRVVGIM   99 (537)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEe------------CCC-----------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            5899999999999999999985            322           69999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCccccc
Q 005874          138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS  217 (672)
Q Consensus       138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~  217 (672)
                      ++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+.......+....++...+...    
T Consensus       100 ~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  175 (537)
T PRK13382        100 CRNHRGFVEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDEDH----  175 (537)
T ss_pred             ecCcHHHHHHHHHHHHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCcc----
Confidence            9999999999999999999999999999999999999999999999998877666554333333333333322110    


Q ss_pred             ccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEEE
Q 005874          218 SVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA  297 (672)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~  297 (672)
                               ...++++.......   .....+++.++++|||||||.||||+++|+++++........+ .+..+|++++
T Consensus       176 ---------~~~~~~~~~~~~~~---~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~~~~l~  242 (537)
T PRK13382        176 ---------DLTVEVLIAAHAGQ---RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRT-PWRAEEPTVI  242 (537)
T ss_pred             ---------cccHHHHhhccCcC---CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhh-CCCCCCeEEE
Confidence                     12344443322111   1123467889999999999999999999999988887777776 7889999999


Q ss_pred             ecChHhHHHHHHHHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCc
Q 005874          298 YLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGG  374 (672)
Q Consensus       298 ~~pl~h~~~~~~~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~  374 (672)
                      .+|++|.+++...+.++..|+++++   +++..+++.           ++++++|++.++|.++..+.+.......    
T Consensus       243 ~~p~~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~~~~~~~~----  307 (537)
T PRK13382        243 VAPMFHAWGFSQLVLAASLACTIVTRRRFDPEATLDL-----------IDRHRATGLAVVPVMFDRIMDLPAEVRN----  307 (537)
T ss_pred             ecChHhhhHHHHHHHHHhcCcEEEECCCcCHHHHHHH-----------HHHhCCEEEEehHHHHHHHHcCCchhcc----
Confidence            9999999999778888999999988   555555555           9999999999999999988753211000    


Q ss_pred             hhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCc
Q 005874          375 LSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGL  454 (672)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~  454 (672)
                                                               ...+.++|.+++||+++++++.+.+.+.++.+++++||+
T Consensus       308 -----------------------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~  346 (537)
T PRK13382        308 -----------------------------------------RYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNA  346 (537)
T ss_pred             -----------------------------------------cCCccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccc
Confidence                                                     011237999999999999999999999999999999999


Q ss_pred             ccccccccccCCC-CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCC
Q 005874          455 TETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKG  533 (672)
Q Consensus       455 TE~~~~~~~~~~~-~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~  533 (672)
                      ||++.+++..... ....+++|.|+++++++|+| +++..+   +.|..|||+++|++++.||+  ++.+.. +     .
T Consensus       347 TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~~~~~---~~g~~GEl~v~g~~~~~gY~--~~~~~~-~-----~  414 (537)
T PRK13382        347 TEAGMIATATPADLRAAPDTAGRPAEGTEIRILD-QDFREV---PTGEVGTIFVRNDTQFDGYT--SGSTKD-F-----H  414 (537)
T ss_pred             cccCcceecChhHhccCCCCccccCcCcEEEEEC-CCCCCC---CCCCeeEEEEEcCCcccCcc--ccchhh-c-----c
Confidence            9998766543322 33457899999999999999 666654   47889999999999999998  454443 3     4


Q ss_pred             CceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcChhHHH
Q 005874          534 MRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQPAVE  610 (672)
Q Consensus       534 ~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~~~~~  610 (672)
                      +|||+|||++++++||.+++.||+||+||. +|++|+|.+||+++.+||+|.+++|++.+++   +.++++|+++++...
T Consensus       415 ~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~  493 (537)
T PRK13382        415 DGFMASGDVGYLDENGRLFVVGRDDEMIVS-GGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASA  493 (537)
T ss_pred             CCCEeeCceEEEeCCCcEEEeccccceeEE-CCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCCC
Confidence            689999999999999999999999999996 6999999999999999999999999998765   348899988765321


Q ss_pred             HHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHH
Q 005874          611 EWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRK  661 (672)
Q Consensus       611 ~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~  661 (672)
                      ....  ....++.+|+.|++|..+.++++.|      +|++||++|++|++
T Consensus       494 ~~~~--l~~~l~~~l~~~~~P~~i~~v~~lP------~t~~gK~~r~~L~~  536 (537)
T PRK13382        494 TPET--LKQHVRDNLANYKVPRDIVVLDELP------RGATGKILRRELQA  536 (537)
T ss_pred             CHHH--HHHHHHHhccCCCCCcEEEEeccCC------CCCCCCCcHHhhCC
Confidence            1111  1156778999999999999998887      99999999999864

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=9.8e-64  Score=557.76  Aligned_cols=521  Identities=22%  Similarity=0.226  Sum_probs=387.8

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF  137 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~  137 (672)
                      .|+.++|.+.++++|+++|+.+.+           +.  +-.....++.+||+||.++++++|.+|.+.|+++|++|+++
T Consensus         6 ~~~~~~l~~~a~~~p~~~a~~~~~-----------~~--~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~   72 (552)
T PRK09274          6 ANIARHLPRAAQERPDQLAVAVPG-----------GR--GADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLM   72 (552)
T ss_pred             hhHHHHHHHHHHhCCCcceEEecc-----------CC--CCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            578899999999999999998631           10  00001234579999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECcc--chHHHHhhhcCCCCccEEEEecCCCccc
Q 005874          138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK--ELKKLVDLSGQLDTVKHVICMDANIPSA  215 (672)
Q Consensus       138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~--~~~~l~~~~~~~~~l~~ii~~~~~~~~~  215 (672)
                      ++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++..  ....+...  ..+..+.++..+....  
T Consensus        73 ~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~--  148 (552)
T PRK09274         73 VTPSLEFFALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGW--GKPSVRRLVTVGGRLL--  148 (552)
T ss_pred             eCCcHHHHHHHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhcc--Cccchhheeccccccc--
Confidence            99999999999999999999999999999999999999999999999752  22222111  1122333333322100  


Q ss_pred             ccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEE
Q 005874          216 VSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY  295 (672)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~  295 (672)
                               .....++++.......+.......++++++|+|||||||.||+|++||+++++.+......+ ++.++|++
T Consensus       149 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~  218 (552)
T PRK09274        149 ---------WGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDY-GIEPGEID  218 (552)
T ss_pred             ---------cCCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHh-CCCCCcee
Confidence                     01123444432222222223345678999999999999999999999999999988888777 88999999


Q ss_pred             EEecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCch
Q 005874          296 LAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGL  375 (672)
Q Consensus       296 l~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~  375 (672)
                      ++.+|++|.+++       ..|+++++....... .....+..++..++++++|+++++|.++..|.+......      
T Consensus       219 ~~~~pl~~~~~~-------~~g~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~------  284 (552)
T PRK09274        219 LPTFPLFALFGP-------ALGMTSVIPDMDPTR-PATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANG------  284 (552)
T ss_pred             eeccCHHHhhhh-------hhCCeEEecCccccc-ccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcC------
Confidence            999999886543       457777662211000 000012223344999999999999999999877432111      


Q ss_pred             hHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh--CCceecccC
Q 005874          376 SKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL--GAPIGQGYG  453 (672)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~--~~~v~~~YG  453 (672)
                                                               ...+++|.+++||+++++++.+.+++.+  ++++++.||
T Consensus       285 -----------------------------------------~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG  323 (552)
T PRK09274        285 -----------------------------------------IKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYG  323 (552)
T ss_pred             -----------------------------------------CCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEcccc
Confidence                                                     1224899999999999999999999998  469999999


Q ss_pred             cccccccccccCCC----------CCCCCccCCCcCCeEEEEEecCCCC-----cccCCCCCCccEEEEccCcccccccC
Q 005874          454 LTETCAGGTFSEVD----------DSSVGRVGAPLPCSFIKLIDWPEGG-----YLTSDSPMPRGEIVIAGPNVTVGYFK  518 (672)
Q Consensus       454 ~TE~~~~~~~~~~~----------~~~~~~~G~p~~~~~v~i~d~~~~~-----~~~~~~~g~~GEi~v~g~~v~~gY~~  518 (672)
                      +||++++++.....          .....++|.|+|+++++|+|..++.     .-..++.|+.|||+++|++++.|||+
T Consensus       324 ~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~  403 (552)
T PRK09274        324 ATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYN  403 (552)
T ss_pred             ccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCeeEEEEecCcccccccC
Confidence            99998765543221          1122478999999999999942211     11124578899999999999999999


Q ss_pred             CchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC--C
Q 005874          519 NEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH--S  596 (672)
Q Consensus       519 ~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~--~  596 (672)
                      +|+.|...|..+.+++.||+|||+|++|+||.|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++  .
T Consensus       404 ~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~  482 (552)
T PRK09274        404 RPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVET-AGGTLYTIPCERIFNTHPGVKRSALVGVGVPGAQ  482 (552)
T ss_pred             ChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEE-CCEEECcHHHHHHHHhCcccceeEEEEeCCCCCc
Confidence            999998876432222249999999999999999999999999997 5999999999999999999999999997654  3


Q ss_pred             eEEEEEEcChhHHHHHHH-HcChhhhhcCCCCCcceeEEEEeecCCCCCCCccc--cccccChHHHHHHHHHHH
Q 005874          597 YCVALVVASQPAVEEWAA-KQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVT--AALKIKREAIRKAFADDL  667 (672)
Q Consensus       597 ~~va~v~~~~~~~~~~~~-~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t--~~gKi~R~~l~~~~~~~i  667 (672)
                      .++++|+++++...+... ...+......++.++.|+.++++++.|      +|  ++|||+|++|++++.+.+
T Consensus       483 ~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~lP------~t~~~~GKi~r~~L~~~~~~~~  550 (552)
T PRK09274        483 RPVLCVELEPGVACSKSALYQELRALAAAHPHTAGIERFLIHPSFP------VDIRHNAKIFREKLAVWAAKQL  550 (552)
T ss_pred             eEEEEEEccCccccchHHHhhhhHHHHHhcCCCcceeEEeccCCCC------ccccccccccHHHHHHHHHHhh
Confidence            588898887653211110 011112223445667888999999887      88  799999999999988765

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-63  Score=553.88  Aligned_cols=504  Identities=25%  Similarity=0.311  Sum_probs=413.0

Q ss_pred             CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874           57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI  136 (672)
Q Consensus        57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i  136 (672)
                      ..|+.++|.+.++++|+++|+.+            .+.           .+||+|+.+.+.++|..|.+.|+++|++|++
T Consensus        10 ~~~l~~~l~~~a~~~~~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l   66 (523)
T PRK08316         10 RQTIGDILRRSARRYPDKTALVF------------GDR-----------SWTYAELDAAVNRVAAALLDLGLKKGDRVAA   66 (523)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            47899999999999999999986            333           6999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccc
Q 005874          137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV  216 (672)
Q Consensus       137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~  216 (672)
                      +++|+.+++++++||+++|++++|+++..+.+++.++++.++++++|++.+....+.+..+..+ ...+.......... 
T Consensus        67 ~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-  144 (523)
T PRK08316         67 LGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLP-VDTLILSLVLGGRE-  144 (523)
T ss_pred             ECCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcC-ccceeeeecccccc-
Confidence            9999999999999999999999999999999999999999999999999988777765544333 11111111110000 


Q ss_pred             cccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEE
Q 005874          217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL  296 (672)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l  296 (672)
                            .......++++........ .......+++++++|||||||.||+|.+||+++++........+ .++++|+++
T Consensus       145 ------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~~  216 (523)
T PRK08316        145 ------APGGWLDFADWAEAGSVAE-PDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-DMSADDIPL  216 (523)
T ss_pred             ------cccchhhHHHHHhcCCCcc-CccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHh-CCCCCceEE
Confidence                  1223345555544332221 23445678999999999999999999999999999888877777 899999999


Q ss_pred             EecChHhHHHHHH-HHHHhHhCcEEeeC---CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhc
Q 005874          297 AYLPLAHVLELVA-ENLIAGVGSAIGYG---TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAK  372 (672)
Q Consensus       297 ~~~pl~h~~~~~~-~~~~l~~G~~i~~~---~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~  372 (672)
                      +.+|++|..++.. .+.++..|+++++.   ++..+.+.           ++++++|++.++|.++..+.+.....    
T Consensus       217 ~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~----  281 (523)
T PRK08316        217 HALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELILRT-----------IEAERITSFFAPPTVWISLLRHPDFD----  281 (523)
T ss_pred             EccCCchhhhHHHHHHHHHhcCceEEEecCCCHHHHHHH-----------HHHhCCeEEEeCHHHHHHHHcCcccc----
Confidence            9999999999866 45568999999983   44444444           99999999999999998876532110    


Q ss_pred             CchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCceecc
Q 005874          373 GGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQG  451 (672)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~  451 (672)
                                                                 ....+++|.+++||++++.++.+.+++.+ ++++++.
T Consensus       282 -------------------------------------------~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~  318 (523)
T PRK08316        282 -------------------------------------------TRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNC  318 (523)
T ss_pred             -------------------------------------------cCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeee
Confidence                                                       01123799999999999999999999987 7899999


Q ss_pred             cCcccccccccccCCCC--CCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhccc
Q 005874          452 YGLTETCAGGTFSEVDD--SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV  529 (672)
Q Consensus       452 YG~TE~~~~~~~~~~~~--~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~  529 (672)
                      ||+||++.+++.....+  ...+++|.|+++++++|+| +++..+   +.|+.|||+++|+.++.||+++++.+++.|  
T Consensus       319 YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~---~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~--  392 (523)
T PRK08316        319 YGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVD-DDGNDV---APGEVGEIVHRSPQLMLGYWDDPEKTAEAF--  392 (523)
T ss_pred             ecccccCccccccCccccccccCCcccCCCCcEEEEEc-CCCCCC---CCCCcceEEEECCchhhhhcCCHHHHHHHh--
Confidence            99999988766543322  3357899999999999999 666654   468899999999999999999999999988  


Q ss_pred             CCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCCC---eEEEEEEcCh
Q 005874          530 DDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHS---YCVALVVASQ  606 (672)
Q Consensus       530 ~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~~---~~va~v~~~~  606 (672)
                         .+|||+|||+|++++||.++++||.+|+||+ +|++|+|.+||+.+.++++|.+++|++.+++.   .+++++++++
T Consensus       393 ---~~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  468 (523)
T PRK08316        393 ---RGGWFHSGDLGVMDEEGYITVVDRKKDMIKT-GGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKA  468 (523)
T ss_pred             ---hCCCeeccceEEEcCCceEEEecccccEEEe-CCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECC
Confidence               6899999999999999999999999999997 69999999999999999999999999976553   5888988876


Q ss_pred             hHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHHHHh
Q 005874          607 PAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLAR  669 (672)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~~  669 (672)
                      ....+...  ....+++.|+.+++|..++++++.|      +|++||++|++|+++|++.+++
T Consensus       469 ~~~~~~~~--l~~~~~~~l~~~~~p~~i~~v~~~p------~t~~gKi~r~~l~~~~~~~~~~  523 (523)
T PRK08316        469 GATVTEDE--LIAHCRARLAGFKVPKRVIFVDELP------RNPSGKILKRELRERYAGAFTD  523 (523)
T ss_pred             CCCCCHHH--HHHHHHHhcccCCCCcEEEEecCCC------CCCccceeHHHHHHHHHhhccC
Confidence            53211111  1155567899999999999998887      9999999999999999998763

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.6e-63  Score=558.09  Aligned_cols=519  Identities=19%  Similarity=0.249  Sum_probs=413.8

Q ss_pred             CCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHh-cCCCCCCEE
Q 005874           56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQ-LGHKKEERV  134 (672)
Q Consensus        56 ~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~-~g~~~g~~V  134 (672)
                      ...|+.+++++.+..+|+++|+.+            ++.        +.+.+||+|+.+++.++|.+|.+ .|+++|++|
T Consensus         8 ~~~~~~~~l~~~a~~~~~~~a~~~------------~~~--------~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V   67 (576)
T PRK05620          8 VPLSLTRILEYGSTVHGDTTVTTW------------GGA--------EQEQTTFAAIGARAAALAHALHDELGITGDQRV   67 (576)
T ss_pred             CCCcHHHHHHHHHHhCCCceEEEE------------cCC--------ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence            346899999999999999999986            322        34689999999999999999986 799999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcc
Q 005874          135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS  214 (672)
Q Consensus       135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~  214 (672)
                      +++++|+.+++++++||+++|++++|+++..+.+++.++++.++++.+|++....+.+.+.....+.++.++..+.....
T Consensus        68 ~~~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  147 (576)
T PRK05620         68 GSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDAD  147 (576)
T ss_pred             EEEeCCCHHHHHHHHHHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccc
Confidence            99999999999999999999999999999999999999999999999999998888777776667777777766533211


Q ss_pred             cccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHH--hhcCCCCCC
Q 005874          215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVM--TIVPDLGSK  292 (672)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~--~~~~~~~~~  292 (672)
                      . ..........+.+|+++...... ..+.....++++++++|||||||.||||+++|++++.......  ..+ .+..+
T Consensus       148 ~-~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~-~~~~~  224 (576)
T PRK05620        148 S-AAAHMPEGIKVYSYEALLDGRST-VYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSL-AVTHG  224 (576)
T ss_pred             c-chhccccccccccHHHHhhcCCC-cCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhc-CCCCC
Confidence            1 00111123345678888764322 2223345678999999999999999999999999876554432  234 78899


Q ss_pred             cEEEEecChHhHHHHHHHHHHhHhCcEEeeC----CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHh
Q 005874          293 DVYLAYLPLAHVLELVAENLIAGVGSAIGYG----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKK  368 (672)
Q Consensus       293 d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~----~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~  368 (672)
                      |++++.+|++|.+++...+.++..|+++++.    ++..+.+.           ++++++|+++++|.++..+.......
T Consensus       225 ~~~l~~~pl~h~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~  293 (576)
T PRK05620        225 ESFLCCVPIYHVLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKI-----------IATAMPRVAHGVPTLWIQLMVHYLKN  293 (576)
T ss_pred             CeEEEeCChHHhhhhHHHHHHHhcCceEEecCCCCCHHHHHHH-----------HHHhcCceeeecCHHHHHHHHHhhcc
Confidence            9999999999999988888889999999883    33344444           99999999999999998877532111


Q ss_pred             hhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCce
Q 005874          369 VDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPI  448 (672)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v  448 (672)
                      ..                                               ...++|.+++||+++++++.+.++..+++++
T Consensus       294 ~~-----------------------------------------------~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~  326 (576)
T PRK05620        294 PP-----------------------------------------------ERMSLQEIYVGGSAVPPILIKAWEERYGVDV  326 (576)
T ss_pred             Cc-----------------------------------------------ccCceeEEEEcCCCCCHHHHHHHHHHhCCce
Confidence            00                                               0127999999999999999999999899999


Q ss_pred             ecccCcccccccccccCCCC--------CCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCc
Q 005874          449 GQGYGLTETCAGGTFSEVDD--------SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNE  520 (672)
Q Consensus       449 ~~~YG~TE~~~~~~~~~~~~--------~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~  520 (672)
                      ++.||+||++..++.....+        ....++|.+.++++++++| + +..+. ...+..|||+++|++++.||++++
T Consensus       327 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~-g~~~~-~~~~~~Gel~v~g~~~~~gY~~~~  403 (576)
T PRK05620        327 VHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVN-D-GQVME-STDRNEGEIQVRGNWVTASYYHSP  403 (576)
T ss_pred             eeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEec-C-Ccccc-CCCCCceEEEEEcCcccccccCCc
Confidence            99999999987655433221        1124789999999999999 4 44332 234678999999999999999999


Q ss_pred             hhh----hhhcccC--------CCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEE
Q 005874          521 EKT----KEVYKVD--------DKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIM  588 (672)
Q Consensus       521 ~~t----~~~~~~~--------~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~  588 (672)
                      +.+    ...|..+        ...+|||+|||+|++++||.+++.||++|+|+. +|++|+|.+||+++.+||.|.+++
T Consensus       404 ~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~-~G~~i~~~eIE~~l~~~p~v~~~~  482 (576)
T PRK05620        404 TEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRS-GGEWIYSAQLENYIMAAPEVVECA  482 (576)
T ss_pred             cccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhc-CCEEEcHHHHHHHHhcCCCceEEE
Confidence            887    3333211        115789999999999999999999999999995 699999999999999999999999


Q ss_pred             EEecCCCC---eEEEEEEcChhHHHH-HHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHH
Q 005874          589 MHADPFHS---YCVALVVASQPAVEE-WAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFA  664 (672)
Q Consensus       589 V~g~~~~~---~~va~v~~~~~~~~~-~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~  664 (672)
                      |++.+++.   .++++++..++.... ...+.....+.++|+.|++|+.|.++++.|      +|++||++|++|+++++
T Consensus       483 vv~~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~~P------~t~~GKv~r~~L~~~~~  556 (576)
T PRK05620        483 VIGYPDDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLPEYWTFVDEID------KTSVGKFDKKDLRQHLA  556 (576)
T ss_pred             EEeccCCCcCceeEEEEEecCCCCcccccHHHHHHHHHhhCccccCCeEEEEeccCC------CCCcccCcHHHHHHHHh
Confidence            99987653   578888776543211 011111266778999999999999999987      99999999999999998


Q ss_pred             H
Q 005874          665 D  665 (672)
Q Consensus       665 ~  665 (672)
                      +
T Consensus       557 ~  557 (576)
T PRK05620        557 D  557 (576)
T ss_pred             c
Confidence            5

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.2e-65  Score=493.21  Aligned_cols=497  Identities=23%  Similarity=0.323  Sum_probs=423.9

Q ss_pred             CCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 005874           56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA  135 (672)
Q Consensus        56 ~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~  135 (672)
                      ..+|+.+++..+|+++||++|++.            +++           .+||+||.+++.++|.+|+++|+++||+|.
T Consensus        26 ~d~~l~d~L~~~A~~~pdriAv~d------------~~~-----------~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vl   82 (542)
T COG1021          26 QDRTLTDILTDHAARYPDRIAVID------------GER-----------RLSYAELDQRADRLAAGLRRLGIKPGDTVL   82 (542)
T ss_pred             cCCcHHHHHHHHHhhcCCceEEec------------Ccc-----------cccHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence            458999999999999999999984            334           699999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccc-----hHHHHhhhcCCCCccEEEEecC
Q 005874          136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKE-----LKKLVDLSGQLDTVKHVICMDA  210 (672)
Q Consensus       136 i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~l~~~~~~~~~l~~ii~~~~  210 (672)
                      +-+||..++++++||++++|+.+|.--|.....+|.+..+..+++.+|.+...     .+...+.....+.++++++.++
T Consensus        83 vQLpN~~ef~~~~FALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge  162 (542)
T COG1021          83 VQLPNVAEFYITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGE  162 (542)
T ss_pred             EECCchHHHHHHHHHHHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccC
Confidence            99999999999999999999999998898889999999999999999998753     3556667788899999998754


Q ss_pred             CCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCC
Q 005874          211 NIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG  290 (672)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~  290 (672)
                      .....             .....+........+..+..++++++...+.||||.||.+..||....-+++.-.+.+ +++
T Consensus       163 ~~~~~-------------~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC-~~~  228 (542)
T COG1021         163 AEHPS-------------VLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC-GFD  228 (542)
T ss_pred             CCCcc-------------hhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhh-CcC
Confidence            42111             1112222223333345667788999999999999999999999999988888888888 999


Q ss_pred             CCcEEEEecChHhHHHHHH--HHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHH
Q 005874          291 SKDVYLAYLPLAHVLELVA--ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGV  365 (672)
Q Consensus       291 ~~d~~l~~~pl~h~~~~~~--~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~  365 (672)
                      +++++|+.+|..|-+-+..  .+..++.|+++++   .+|...+..           |+++++|+...+|.+...+++..
T Consensus       229 ~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~~psp~~~F~l-----------Ierh~Vt~tALVPpla~LWlqa~  297 (542)
T COG1021         229 QQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPL-----------IERHGVTVTALVPPLASLWLQAA  297 (542)
T ss_pred             ccceEEEecccccCCCCCCcchhheeeeccEEEECCCCCHHHHHHH-----------HHHhccceEEeccHHHHHHHHhh
Confidence            9999999999999998876  6778999999999   556555555           99999999999999999988865


Q ss_pred             HHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhC
Q 005874          366 RKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLG  445 (672)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~  445 (672)
                      ....                                               ..+++||.+-+||+.++++..+++...+|
T Consensus       298 e~~~-----------------------------------------------~~LsSLrllQVGGarl~~~~Arrv~~~lg  330 (542)
T COG1021         298 EWER-----------------------------------------------ADLSSLRLLQVGGARLSATLARRVPAVLG  330 (542)
T ss_pred             hccc-----------------------------------------------CCchheeEEeecCcccCHHHHhhchhhhC
Confidence            4422                                               23359999999999999999999999999


Q ss_pred             CceecccCcccccccccccCCCC---CCCCccCCCc-CCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCch
Q 005874          446 APIGQGYGLTETCAGGTFSEVDD---SSVGRVGAPL-PCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEE  521 (672)
Q Consensus       446 ~~v~~~YG~TE~~~~~~~~~~~~---~~~~~~G~p~-~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~  521 (672)
                      |.+-|.+||.|.-  ......++   .-..+-|+|+ |.-|++|+| .+++.+.   +|+.|||..|||..++|||+.|+
T Consensus       331 C~LQQVFGMAEGL--vnyTRLDDp~E~i~~TQGrPlsP~DEvrvvD-~dg~pv~---pGE~G~LltRGPYTirGYyrap~  404 (542)
T COG1021         331 CQLQQVFGMAEGL--VNYTRLDDPPEIIIHTQGRPLSPDDEVRVVD-ADGNPVA---PGEVGELLTRGPYTIRGYYRAPE  404 (542)
T ss_pred             chHHHHhhhhhhh--hcccccCCchHheeecCCCcCCCcceeEEec-CCCCCCC---CCCcceeeecCCeeeeeeccCch
Confidence            9999999999953  23332222   2347889997 788999999 8888765   89999999999999999999999


Q ss_pred             hhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeE
Q 005874          522 KTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYC  598 (672)
Q Consensus       522 ~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~  598 (672)
                      -++.+|+    .+|+|+|||+.++|+||+|.+.||.||+|+ ++||+|..+|||+.|.+||.|.+|++++.+|+   ++.
T Consensus       405 HNa~aF~----a~GFYrsGD~V~~~~dGyl~V~GR~KDQIN-RgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEks  479 (542)
T COG1021         405 HNARAFD----ADGFYRSGDLVRRDPDGYLVVEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKS  479 (542)
T ss_pred             hhhhccC----cCCceecCceeEecCCceEEEEeeehhhhc-cccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcce
Confidence            9999999    999999999999999999999999999999 79999999999999999999999999999877   679


Q ss_pred             EEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874          599 VALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD  666 (672)
Q Consensus       599 va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~  666 (672)
                      ||||++++..........  .-.+..|..|++|++|.+++..|      +|+-|||++++|++.+...
T Consensus       480 CAfiv~~~~~~~~~qlr~--~L~~~GlAa~K~PDrie~v~~~P------~T~VGKIdKk~Lr~~l~~~  539 (542)
T COG1021         480 CAFIVVKEPPLRAAQLRR--FLRERGLAAFKLPDRIEFVDSLP------LTAVGKIDKKALRRRLASR  539 (542)
T ss_pred             eEEEEecCCCCCHHHHHH--HHHHcchhhhcCCcceeecccCC------CcccccccHHHHHHHhhhh
Confidence            999998877533211111  23357999999999999999998      9999999999999887653

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.7e-64  Score=576.34  Aligned_cols=478  Identities=22%  Similarity=0.262  Sum_probs=383.3

Q ss_pred             CCHHHHHHHHHHH--cCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 005874           58 STLAELFEQSCKE--HGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA  135 (672)
Q Consensus        58 ~tl~~~~~~~a~~--~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~  135 (672)
                      .|+.++|.+.+.+  +||++|+..             +.           .+||+||.++++++|.+|.+.|+++|++|+
T Consensus         4 ~~~~~~~~~~a~~~~~pd~~a~~~-------------~~-----------~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~   59 (705)
T PRK06060          4 GNLAGLLAEQASEAGWYDRPAFYA-------------AD-----------VVTHGQIHDGAARLGEVLRNRGLSSGDRVL   59 (705)
T ss_pred             cCHHHHHHHHHhhccCCCceEEEe-------------cC-----------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            3789999998886  799999974             12           599999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCccc
Q 005874          136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSA  215 (672)
Q Consensus       136 i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~  215 (672)
                      |+++|+++++++++||+++|++++|++|.++.+++.+++++++++++|++......+...        .++         
T Consensus        60 i~~~~~~~~~~~~la~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~--------~~~---------  122 (705)
T PRK06060         60 LCLPDSPDLVQLLLACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS--------RVA---------  122 (705)
T ss_pred             EECCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc--------ccc---------
Confidence            999999999999999999999999999999999999999999999999987654432210        000         


Q ss_pred             ccccccCCCeEEEeHHHHHhcc-cCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHh-hcCCCCCCc
Q 005874          216 VSSVEQSGRWKITSFADVQILG-RENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT-IVPDLGSKD  293 (672)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~-~~~~~~~~d  293 (672)
                                   ...++.... ...+.......++++++++|||||||.||||+++|+++++.+..+.. .+ .+.++|
T Consensus       123 -------------~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d  188 (705)
T PRK06060        123 -------------EAAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKAL-RLTPED  188 (705)
T ss_pred             -------------hhhhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhh-CCCCcc
Confidence                         001111100 00111122345689999999999999999999999999988776643 45 788999


Q ss_pred             EEEEecChHhHHHHHH-HHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhc
Q 005874          294 VYLAYLPLAHVLELVA-ENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAK  372 (672)
Q Consensus       294 ~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~  372 (672)
                      ++++.+|++|.+++.. ++.++..|+++++.+.....       ..+...++++++|+++++|.++..+.+.....    
T Consensus       189 ~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~-------~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~----  257 (705)
T PRK06060        189 TGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVTP-------EAAAILSARFGPSVLYGVPNFFARVIDSCSPD----  257 (705)
T ss_pred             eeEEeccchhhcchhHHHHHHHhcCCEEEEeCCCCCH-------HHHHHHHHhcCCeEEeeHHHHHHHHHHhcccc----
Confidence            9999999999988754 66789999999983321100       01112278999999999999998887532100    


Q ss_pred             CchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCceecc
Q 005874          373 GGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQG  451 (672)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~  451 (672)
                                                                   ..+++|.+++||+++++++.+.+.+.+ ++++++.
T Consensus       258 ---------------------------------------------~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~  292 (705)
T PRK06060        258 ---------------------------------------------SFRSLRCVVSAGEALELGLAERLMEFFGGIPILDG  292 (705)
T ss_pred             ---------------------------------------------cccceeEEEEecCcCCHHHHHHHHHHcCCCceEee
Confidence                                                         013799999999999999999999888 5899999


Q ss_pred             cCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCC
Q 005874          452 YGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDD  531 (672)
Q Consensus       452 YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~  531 (672)
                      ||+||++.............+++|.|+++++++|+| +++..+   +.|+.|||||+|++++.||+++|+.+.   .   
T Consensus       293 YG~tE~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~g~~~---~~g~~GEl~i~g~~v~~GY~~~~~~~~---~---  362 (705)
T PRK06060        293 IGSTEVGQTFVSNRVDEWRLGTLGRVLPPYEIRVVA-PDGTTA---GPGVEGDLWVRGPAIAKGYWNRPDSPV---A---  362 (705)
T ss_pred             eeccccCceEEeccCCCCCcCcccccCCCcEEEEEC-CCCCCC---CCCCceEEEEccchhhhhhhCCCcccc---c---
Confidence            999999765544433344567899999999999999 666544   578899999999999999999998652   2   


Q ss_pred             CCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcChhH
Q 005874          532 KGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQPA  608 (672)
Q Consensus       532 ~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~~~  608 (672)
                       .+|||+|||+|++++||.++++||+||+||+ +|++|+|.+||+++.+||.|.+++|++.+++   +.++++|++....
T Consensus       363 -~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~  440 (705)
T PRK06060        363 -NEGWLDTRDRVCIDSDGWVTYRCRADDTEVI-GGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGA  440 (705)
T ss_pred             -CCCcEECCeeEEECCCceEEEecccCceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEecccc
Confidence             5799999999999999999999999999998 5999999999999999999999999997654   3689999876542


Q ss_pred             HHHH-HHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHH
Q 005874          609 VEEW-AAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFA  664 (672)
Q Consensus       609 ~~~~-~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~  664 (672)
                      ..+. ........+.++|+.|++|..|+++++.|      +|++||++|++|++.+.
T Consensus       441 ~~~~~~~~~i~~~l~~~L~~~~~P~~i~~v~~iP------~t~~GKidr~~L~~~~~  491 (705)
T PRK06060        441 TIDGSVMRDLHRGLLNRLSAFKVPHRFAVVDRLP------RTPNGKLVRGALRKQSP  491 (705)
T ss_pred             CcChHHHHHHHHHHHHhCCCCcCCcEEEEeecCC------CCcchhhHHHHHHhhcc
Confidence            1111 01111156678999999999999999987      99999999999998764

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-63  Score=549.68  Aligned_cols=484  Identities=24%  Similarity=0.297  Sum_probs=398.1

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQ-LGHKKEERVAI  136 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~-~g~~~g~~V~i  136 (672)
                      ..+.+.|++.|+.+||++|+..            +++           .+||+|+.++++++|..|.+ .|+++|++|++
T Consensus         2 ~~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i   58 (496)
T PRK06839          2 QGIAYWIEKRAYLHPDRIAIIT------------EEE-----------EMTYKQLHEYVSKVAAYLIYELNVKKGERIAI   58 (496)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEE------------CCc-----------eEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            3678999999999999999986            444           79999999999999999986 69999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccc
Q 005874          137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV  216 (672)
Q Consensus       137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~  216 (672)
                      +++|+++++++++||+++|++++|+++.++++++.++++.++++.+++++...+.+.+..... ....++.+.       
T Consensus        59 ~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~-------  130 (496)
T PRK06839         59 LSQNSLEYIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVS-YVQRVISIT-------  130 (496)
T ss_pred             ECCCCHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhcc-CcceEEEec-------
Confidence            999999999999999999999999999999999999999999999999988766655543322 112222221       


Q ss_pred             cccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEE
Q 005874          217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL  296 (672)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l  296 (672)
                                  ++.++....   ..+.....++++++|+|||||||.||+|+++|+++..........+ .++.+|+++
T Consensus       131 ------------~~~~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~l  194 (496)
T PRK06839        131 ------------SLKEIEDRK---IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAI-DLTMHDRSI  194 (496)
T ss_pred             ------------chHhhhccC---CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHc-CCCCCCeEE
Confidence                        122222111   1122345568999999999999999999999999987766666666 788999999


Q ss_pred             EecChHhHHHHHH-HHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhc
Q 005874          297 AYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAK  372 (672)
Q Consensus       297 ~~~pl~h~~~~~~-~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~  372 (672)
                      ..+|++|.+++.. .+.++..|+++++   .++..+.+.           ++++++|++.++|.+++.+.+.....    
T Consensus       195 ~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~----  259 (496)
T PRK06839        195 VLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSM-----------IEKHKVTVVMGVPTIHQALINCSKFE----  259 (496)
T ss_pred             EeeCCcchhhHHHHHHHHHhcCcEEEEccCCCHHHHHHH-----------HHhhCCeEEEehHHHHHHHHhCcccc----
Confidence            9999999999766 4677999999988   444444444           99999999999999999987632110    


Q ss_pred             CchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceeccc
Q 005874          373 GGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGY  452 (672)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~Y  452 (672)
                                                                 ....+++|.+++||+++++++.+.++.. ++++.+.|
T Consensus       260 -------------------------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~Y  295 (496)
T PRK06839        260 -------------------------------------------TTNLQSVRWFYNGGAPCPEELMREFIDR-GFLFGQGF  295 (496)
T ss_pred             -------------------------------------------cCCCcccceEEECCCCCCHHHHHHHHHh-CCeeEeec
Confidence                                                       0112489999999999999999999886 99999999


Q ss_pred             CcccccccccccCCC--CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccC
Q 005874          453 GLTETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVD  530 (672)
Q Consensus       453 G~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~  530 (672)
                      |+||++..++.....  ....+++|.|+++++++|+| +++..+   +.|+.|||+|+|+.++.||+++++.++..+   
T Consensus       296 G~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~~~---~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~---  368 (496)
T PRK06839        296 GMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELID-ENKNKV---EVGEVGELLIRGPNVMKEYWNRPDATEETI---  368 (496)
T ss_pred             cCCCCCcceEecccccccccCCCCcccCCCceEEEEC-CCcCCC---CCCCceEEEEECCCcchhhcCChHHHHHHH---
Confidence            999998654433222  23457899999999999999 666653   588999999999999999999999998887   


Q ss_pred             CCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCCC---eEEEEEEcChh
Q 005874          531 DKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHS---YCVALVVASQP  607 (672)
Q Consensus       531 ~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~~---~~va~v~~~~~  607 (672)
                        .+|||+|||+|+++++|.+++.||.+|+|+. +|++|+|.+||+++.++|+|.+++|++.+++.   .++++|+++++
T Consensus       369 --~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~  445 (496)
T PRK06839        369 --QDGWLCTGDLARVDEDGFVYIVGRKKEMIIS-GGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSS  445 (496)
T ss_pred             --cCCCeeecceEEEcCCCcEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCC
Confidence              6899999999999999999999999999996 69999999999999999999999999987653   58999998765


Q ss_pred             HHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874          608 AVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       608 ~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                      ......+  ....+++.|+.+++|..++++++.|      +|++||++|++|+++-++
T Consensus       446 ~~~~~~~--l~~~~~~~l~~~~~P~~~~~v~~~P------~t~~GKi~r~~l~~~~~~  495 (496)
T PRK06839        446 SVLIEKD--VIEHCRLFLAKYKIPKEIVFLKELP------KNATGKIQKAQLVNQLKS  495 (496)
T ss_pred             CCCCHHH--HHHHHHhhCcCCCCCcEEEEeccCC------CCccccccHHHHHHHhhc
Confidence            3221111  1155668999999999999999987      999999999999987653

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.6e-64  Score=555.59  Aligned_cols=502  Identities=20%  Similarity=0.204  Sum_probs=386.5

Q ss_pred             CCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 005874           56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA  135 (672)
Q Consensus        56 ~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~  135 (672)
                      ...|+.+.|.+.++.+|+++|+...           ++.          ..+||+||.+++.++|+.|.+.|+++|++|+
T Consensus        12 ~~~~~~~~l~~~a~~~p~~~a~~~~-----------~~~----------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~   70 (540)
T PRK05857         12 LPSTVLDRVFEQARQQPEAIALRRC-----------DGT----------SALRYRELVAEVGGLAADLRAQSVSRGSRVL   70 (540)
T ss_pred             CCcchHHHHHHHHhhCCCcEEEeec-----------CCC----------ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEE
Confidence            3468999999999999999999753           222          3699999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCccc
Q 005874          136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSA  215 (672)
Q Consensus       136 i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~  215 (672)
                      ++++|++++++++|||+++|++++|+++.++.+++.++++.++++.+|+++........+......+. ++..+......
T Consensus        71 i~~~~~~e~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  149 (540)
T PRK05857         71 VISDNGPETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIP-VIAVDIAAVTR  149 (540)
T ss_pred             EEcCCCHHHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccc-eeEeecccccc
Confidence            99999999999999999999999999999999999999999999999999865422211111112222 22222111000


Q ss_pred             ccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhh---cCCCCCC
Q 005874          216 VSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI---VPDLGSK  292 (672)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~~  292 (672)
                               .   ....+   ....+.......++++++++|||||||.||||++||+++.+........   +.....+
T Consensus       150 ---------~---~~~~~---~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~  214 (540)
T PRK05857        150 ---------E---SEHSL---DAASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVG  214 (540)
T ss_pred             ---------c---ccccc---cccccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccC
Confidence                     0   00000   0000111223456899999999999999999999999998776543321   1155678


Q ss_pred             cEEEEecChHhHHHHHHHHHHhHhCcEEee--CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhh
Q 005874          293 DVYLAYLPLAHVLELVAENLIAGVGSAIGY--GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD  370 (672)
Q Consensus       293 d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~--~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~  370 (672)
                      +++++.+|++|..++...+.+++.|+++++  .++..+.+.           ++++++|+++++|.++..+........ 
T Consensus       215 ~~~~~~~p~~h~~~l~~~~~~l~~G~~~v~~~~~~~~~~~~-----------i~~~~it~~~~~P~~~~~l~~~~~~~~-  282 (540)
T PRK05857        215 ETTYSPLPATHIGGLWWILTCLMHGGLCVTGGENTTSLLEI-----------LTTNAVATTCLVPTLLSKLVSELKSAN-  282 (540)
T ss_pred             ceeeecCCccccchHHHHHHHhhcceeEEecCCChhHHHHH-----------HHhcCcceEEeChHHHHHHHhccccCC-
Confidence            999999999999998888888999999877  444444444           999999999999999998876321110 


Q ss_pred             hcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceec
Q 005874          371 AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQ  450 (672)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~  450 (672)
                                                                    ...+++|.+++||++++....+++ ..+++++++
T Consensus       283 ----------------------------------------------~~~~~lr~~~~gG~~~~~~~~~~~-~~~g~~i~~  315 (540)
T PRK05857        283 ----------------------------------------------ATVPSLRLVGYGGSRAIAADVRFI-EATGVRTAQ  315 (540)
T ss_pred             ----------------------------------------------CcCccceEEEEcCccCCchhHHHH-HHhCCeeec
Confidence                                                          112489999999999998887655 466999999


Q ss_pred             ccCcccccccccccCCC-----CCCCCccCCCcCCeEEEEEecCCCCc-cc--CCCCCCccEEEEccCcccccccCCchh
Q 005874          451 GYGLTETCAGGTFSEVD-----DSSVGRVGAPLPCSFIKLIDWPEGGY-LT--SDSPMPRGEIVIAGPNVTVGYFKNEEK  522 (672)
Q Consensus       451 ~YG~TE~~~~~~~~~~~-----~~~~~~~G~p~~~~~v~i~d~~~~~~-~~--~~~~g~~GEi~v~g~~v~~gY~~~~~~  522 (672)
                      .||+||++.........     ....+++|.|+++++++|+| +++.. .+  .++.++.|||+|+|++++.||+++++.
T Consensus       316 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d-~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~  394 (540)
T PRK05857        316 VYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAA-TDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPER  394 (540)
T ss_pred             ccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEEC-ccccCccccccCCCCCcceEEEeCcchhhhhhCCccc
Confidence            99999987543322221     12357899999999999999 54432 21  123578899999999999999999999


Q ss_pred             hhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCCC---eEE
Q 005874          523 TKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHS---YCV  599 (672)
Q Consensus       523 t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~~---~~v  599 (672)
                      |.+.|     .+|||+|||+|++|+||.+++.||.+|+||+ +|++|+|.+||+++..||+|.+|+|++.+++.   .++
T Consensus       395 t~~~~-----~~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~  468 (540)
T PRK05857        395 TAEVL-----IDGWVNTGDLLERREDGFFYIKGRSSEMIIC-GGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVG  468 (540)
T ss_pred             hhhhc-----CCCceeccceEEEcCCceEEEeccccccEec-CCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceE
Confidence            99988     5789999999999999999999999999997 69999999999999999999999999987653   466


Q ss_pred             EEEEcChhHHH---HHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874          600 ALVVASQPAVE---EWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD  666 (672)
Q Consensus       600 a~v~~~~~~~~---~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~  666 (672)
                      ++|++++....   ....+.....+++.|+.|++|+.+.++++.|      +|++||++|++|++.++..
T Consensus       469 ~~vv~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~P~~v~~~~~iP------~t~~GKi~r~~l~~~~~~~  532 (540)
T PRK05857        469 LAVVASAELDESAARALKHTIAARFRRESEPMARPSTIVIVTDIP------RTQSGKVMRASLAAAATAD  532 (540)
T ss_pred             EEEEeCCCCChhhHHHHHHHHHHHHHhhhccccCCeEEEEhhcCC------CCCCcceeHHHHHHhhhhc
Confidence            66665543111   1111111144557899999999999999987      9999999999999988754

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.2e-63  Score=551.92  Aligned_cols=505  Identities=19%  Similarity=0.221  Sum_probs=415.0

Q ss_pred             CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874           55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV  134 (672)
Q Consensus        55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V  134 (672)
                      ...+|+.+.+...+..+|+++|+.+            +++           .+||.||.++++++|.+|.+.|+++|++|
T Consensus        14 ~~~~n~~~~~~~~a~~~~~~~a~~~------------~~~-----------~~ty~~l~~~~~~~a~~L~~~g~~~g~~V   70 (542)
T PRK07786         14 ARRQNWVNQLARHALMQPDAPALRF------------LGN-----------TTTWRELDDRVAALAGALSRRGVGFGDRV   70 (542)
T ss_pred             ccccCHHHHHHHHHHHCCCCeEEEe------------CCC-----------cccHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence            3557899999999999999999986            343           69999999999999999999999999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcc
Q 005874          135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS  214 (672)
Q Consensus       135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~  214 (672)
                      +|+++|+++++++++||+++|++++|+++..+.+++.+++++++++.++++....+.+.......+.++.++.+++... 
T Consensus        71 ~i~~~~~~~~~~~~~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  149 (542)
T PRK07786         71 LILMLNRTEFVESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSD-  149 (542)
T ss_pred             EEECCCCHHHHHHHHHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCc-
Confidence            9999999999999999999999999999999999999999999999999998877766665555566777776653211 


Q ss_pred             cccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCC-CCCc
Q 005874          215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL-GSKD  293 (672)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~-~~~d  293 (672)
                                ....+++++........ +......+++++++|||||||.||||++||+++.+.+......+ ++ ..+|
T Consensus       150 ----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~  217 (542)
T PRK07786        150 ----------DSVLGYEDLLAEAGPAH-APVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTN-GADINSD  217 (542)
T ss_pred             ----------ccccCHHHHhhccCCCC-CCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhc-CCCCCCc
Confidence                      11245666654332221 22334567899999999999999999999999998888777776 55 6789


Q ss_pred             EEEEecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcC
Q 005874          294 VYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKG  373 (672)
Q Consensus       294 ~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~  373 (672)
                      ++++.+|++|.+++...+.++..|+++++.+....  .    +..+...++++++|+++++|.++..+.........   
T Consensus       218 ~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~--~----~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~---  288 (542)
T PRK07786        218 VGFVGVPLFHIAGIGSMLPGLLLGAPTVIYPLGAF--D----PGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPR---  288 (542)
T ss_pred             eEEEecchHHHHHHHHHHHHHHccCEEEEccCCCc--C----HHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCcc---
Confidence            99999999999999888889999999998332111  1    11223339999999999999999998763211100   


Q ss_pred             chhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCceeccc
Q 005874          374 GLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQGY  452 (672)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~Y  452 (672)
                                                                   ..++|.+++||+++++++.+.+++.+ +.++++.|
T Consensus       289 ---------------------------------------------~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~Y  323 (542)
T PRK07786        289 ---------------------------------------------DLALRVLSWGAAPASDTLLRQMAATFPEAQILAAF  323 (542)
T ss_pred             ---------------------------------------------CcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeee
Confidence                                                         01689999999999999999999988 78999999


Q ss_pred             CcccccccccccCCCC--CCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccC
Q 005874          453 GLTETCAGGTFSEVDD--SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVD  530 (672)
Q Consensus       453 G~TE~~~~~~~~~~~~--~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~  530 (672)
                      |+||++.+.+......  ...+++|.|+++++++|+| +++..+   +.|+.|||+++|+.+++||+++++.++..|   
T Consensus       324 G~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~---~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f---  396 (542)
T PRK07786        324 GQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVD-ENMNDV---PVGEVGEIVYRAPTLMSGYWNNPEATAEAF---  396 (542)
T ss_pred             cccccccceEecCcccccccCCCccccCCCceEEEEC-CCCCCC---cCCCceEEEEEChhhhhhhcCCHHHHHHHh---
Confidence            9999987655433221  2447899999999999999 666654   478899999999999999999999999998   


Q ss_pred             CCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcChh
Q 005874          531 DKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQP  607 (672)
Q Consensus       531 ~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~~  607 (672)
                        .+|||+|||++++++||.++++||.+|+||+ +|++|+|.+||+++.++|.|.+++|++..++   +.+++++++.+.
T Consensus       397 --~~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  473 (542)
T PRK07786        397 --AGGWFHSGDLVRQDEEGYVWVVDRKKDMIIS-GGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRND  473 (542)
T ss_pred             --hCCcccccceEEEcCCceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCC
Confidence              5799999999999999999999999999997 6999999999999999999999999997654   458888887654


Q ss_pred             HHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874          608 AVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD  666 (672)
Q Consensus       608 ~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~  666 (672)
                      ... .........+++.++.|++|..+++++..|      +|++||++|++|++.|++.
T Consensus       474 ~~~-~~~~~l~~~l~~~l~~~~~P~~i~~v~~iP------~t~~GKv~r~~L~~~~~~~  525 (542)
T PRK07786        474 DAA-LTLEDLAEFLTDRLARYKHPKALEIVDALP------RNPAGKVLKTELRERYGAC  525 (542)
T ss_pred             CCC-CCHHHHHHHHHhhccCCCCCCEEEEeccCC------CCCcccccHHHHHHHHHhh
Confidence            210 001111155678999999999999999987      9999999999999999875

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.3e-63  Score=551.86  Aligned_cols=497  Identities=22%  Similarity=0.303  Sum_probs=403.4

Q ss_pred             CCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 005874           56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA  135 (672)
Q Consensus        56 ~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~  135 (672)
                      ...|+.++|.+.++++|+++|+..            ++.           .+||+|+.+++.++|..|.+.|+++|++|+
T Consensus         5 ~~~~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~   61 (528)
T PRK07470          5 RVMNLAHFLRQAARRFPDRIALVW------------GDR-----------SWTWREIDARVDALAAALAARGVRKGDRIL   61 (528)
T ss_pred             cCCCHHHHHHHHHHHCCCceEEEE------------CCc-----------cccHHHHHHHHHHHHHHHHHhCCCCCCEEE
Confidence            457899999999999999999986            333           699999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCccc
Q 005874          136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSA  215 (672)
Q Consensus       136 i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~  215 (672)
                      ++++|+++++++++||+++|++++|+++..+.+.+.++++.++++.++++.+....+.......+..+.++.+....   
T Consensus        62 i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  138 (528)
T PRK07470         62 VHSRNCNQMFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGAR---  138 (528)
T ss_pred             EEcCCCHHHHHHHHHHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCc---
Confidence            99999999999999999999999999999999999999999999999999887666655544445555556554321   


Q ss_pred             ccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhh-cCCCCCCcE
Q 005874          216 VSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI-VPDLGSKDV  294 (672)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~-~~~~~~~d~  294 (672)
                                ...+++++...............++++++|+|||||||.||+|+++|+++...+...... +..+.++|+
T Consensus       139 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~  208 (528)
T PRK07470        139 ----------AGLDYEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDA  208 (528)
T ss_pred             ----------ccccHHHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccE
Confidence                      123455555433222223344567899999999999999999999999997665543332 235678899


Q ss_pred             EEEecChHhHHHHHHHHHHhHhCcEEeeC-----CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhh
Q 005874          295 YLAYLPLAHVLELVAENLIAGVGSAIGYG-----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKV  369 (672)
Q Consensus       295 ~l~~~pl~h~~~~~~~~~~l~~G~~i~~~-----~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~  369 (672)
                      ++..+|++|.+++...+ .+..|++.++.     ++..+.+           .++++++|++.++|.+++.+.+....  
T Consensus       209 ~l~~~p~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~-----------~i~~~~~t~~~~~P~~~~~l~~~~~~--  274 (528)
T PRK07470        209 SLVVAPLSHGAGIHQLC-QVARGAATVLLPSERFDPAEVWA-----------LVERHRVTNLFTVPTILKMLVEHPAV--  274 (528)
T ss_pred             EEEeccchhHHHHHHHH-HHhcCceEEEecccCcCHHHHHH-----------HHHhcCCeEEechHHHHHHHHhCcCc--
Confidence            99999999999986544 56677777662     2333333           39999999999999999887652110  


Q ss_pred             hhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCcee
Q 005874          370 DAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIG  449 (672)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~  449 (672)
                                                                   .....+++|.+++||+++++...+.+...++.+++
T Consensus       275 ---------------------------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~  309 (528)
T PRK07470        275 ---------------------------------------------DRYDHSSLRYVIYAGAPMYRADQKRALAKLGKVLV  309 (528)
T ss_pred             ---------------------------------------------CCCCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHH
Confidence                                                         00112489999999999999999999888899999


Q ss_pred             cccCcccccccccccCC--------CCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCch
Q 005874          450 QGYGLTETCAGGTFSEV--------DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEE  521 (672)
Q Consensus       450 ~~YG~TE~~~~~~~~~~--------~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~  521 (672)
                      +.||+||+++.++....        .....+++|.|.++++++++| +++..+   +.|+.|||+++|+.++.||+++++
T Consensus       310 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~~~~~~---~~g~~Gel~i~~~~~~~gy~~~~~  385 (528)
T PRK07470        310 QYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQD-DEGREL---PPGETGEICVIGPAVFAGYYNNPE  385 (528)
T ss_pred             HhCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEEC-CCCCCC---CCCCceEEEEeCCccchhhcCCHH
Confidence            99999999876554322        122457899999999999999 677654   478899999999999999999999


Q ss_pred             hhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCCC---eE
Q 005874          522 KTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHS---YC  598 (672)
Q Consensus       522 ~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~~---~~  598 (672)
                      .+++.|     .+|||+|||+|++++||.+++.||+||+||+ +|++|+|.+||+++.+++.|.+|+|++.+++.   .+
T Consensus       386 ~~~~~~-----~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~  459 (528)
T PRK07470        386 ANAKAF-----RDGWFRTGDLGHLDARGFLYITGRASDMYIS-GGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVG  459 (528)
T ss_pred             HHHhhh-----cCCcEecceeEEEccCCeEEEeCCccceEEe-CCEEECHHHHHHHHHhCCCceEEEEEeccCcccCcee
Confidence            998888     6799999999999999999999999999997 59999999999999999999999999987653   47


Q ss_pred             EEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874          599 VALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       599 va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                      ++++++.++...+...  ....+.+.|+.|++|..++++++.|      +|++||++|+.|+++|++
T Consensus       460 ~~~~~~~~~~~~~~~~--~~~~l~~~l~~~~~P~~~~~~~~iP------~t~~GKi~r~~l~~~~~~  518 (528)
T PRK07470        460 VAVCVARDGAPVDEAE--LLAWLDGKVARYKLPKRFFFWDALP------KSGYGKITKKMVREELEE  518 (528)
T ss_pred             EEEEEECCCCCCCHHH--HHHHHHHhhhcCCCCcEEEEeccCC------CCCcccccHHHHHHHHHh
Confidence            8888876543111111  1155678999999999999999887      999999999999998876

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=3.3e-63  Score=554.59  Aligned_cols=506  Identities=22%  Similarity=0.247  Sum_probs=389.6

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF  137 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~  137 (672)
                      .|+.+++.+.++.+|+++|+.+            ++.           .+||+||.++++++|.+|.+.|+++||+|+|+
T Consensus        14 ~~~~~~l~~~~~~~p~~~Al~~------------~~~-----------~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~   70 (579)
T PLN03102         14 LTPITFLKRASECYPNRTSIIY------------GKT-----------RFTWPQTYDRCCRLAASLISLNITKNDVVSVL   70 (579)
T ss_pred             ccHHHHHHHHHHhCCCCeEEEE------------CCc-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            5799999999999999999986            333           69999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCC-----ccEEEEecCCC
Q 005874          138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDT-----VKHVICMDANI  212 (672)
Q Consensus       138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~-----l~~ii~~~~~~  212 (672)
                      ++|+++|++++|||+++|++++|+++.++.+++.++++.++++++|++.+..+.+.+....++.     ...++.++...
T Consensus        71 ~~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (579)
T PLN03102         71 APNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEID  150 (579)
T ss_pred             cCCcHHHHHHHHHHHhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccc
Confidence            9999999999999999999999999999999999999999999999998877666655433221     11234443221


Q ss_pred             cccccccccCCCeEEEeHHHHHhcccCCCCC----CCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCC
Q 005874          213 PSAVSSVEQSGRWKITSFADVQILGRENPVD----ADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPD  288 (672)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~  288 (672)
                      ....      ......++.++.......+..    .....++++++|+|||||||.||||+++|+++........... .
T Consensus       151 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~  223 (579)
T PLN03102        151 FPKR------PSSEELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGW-E  223 (579)
T ss_pred             cccC------CcccccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhc-C
Confidence            1000      011234566665433222111    1224568999999999999999999999999765544433334 5


Q ss_pred             CCCCcEEEEecChHhHHHHHHHHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHH
Q 005874          289 LGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGV  365 (672)
Q Consensus       289 ~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~  365 (672)
                      +...+++++.+|++|..++...+.++..|+++++   +++..+++.           ++++++|++.++|+++..|.+..
T Consensus       224 ~~~~~~~l~~~pl~h~~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~  292 (579)
T PLN03102        224 MGTCPVYLWTLPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKN-----------IEMHNVTHMCCVPTVFNILLKGN  292 (579)
T ss_pred             CCCCCeEEecCChhhhcchhHHHHHHHhcCcEEeeccCChHHHHHH-----------HHHcCCeEEEeChHHHHHHHhCc
Confidence            6778899999999999998877778888888877   344444444           99999999999999999987632


Q ss_pred             HHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhC
Q 005874          366 RKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLG  445 (672)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~  445 (672)
                      .....                                               ..++++.+++||+++++.+.+.++. ++
T Consensus       293 ~~~~~-----------------------------------------------~~~~~~~~~~gg~~~~~~~~~~~~~-~g  324 (579)
T PLN03102        293 SLDLS-----------------------------------------------PRSGPVHVLTGGSPPPAALVKKVQR-LG  324 (579)
T ss_pred             ccccC-----------------------------------------------CcccceEEEECCCCCCHHHHHHHHH-cC
Confidence            11100                                               0125778999999999999998876 59


Q ss_pred             CceecccCcccccccccccCCCC--------------CCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCc
Q 005874          446 APIGQGYGLTETCAGGTFSEVDD--------------SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPN  511 (672)
Q Consensus       446 ~~v~~~YG~TE~~~~~~~~~~~~--------------~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~  511 (672)
                      ++++++||+||+++.++......              ...+..+.+.++  +.++|.+.+..++ .+.+..|||+|+|++
T Consensus       325 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--v~i~~~~~~~~v~-~~~~~~GEl~v~g~~  401 (579)
T PLN03102        325 FQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLAD--VDVKNKETQESVP-RDGKTMGEIVIKGSS  401 (579)
T ss_pred             CeEEeecCccccCccccccccccccccCCcccccccccCCCcccccccc--eEEeccccccccC-CCCCCceEEEEECcc
Confidence            99999999999986543221100              112333344444  4555633333333 122367999999999


Q ss_pred             ccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEe
Q 005874          512 VTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHA  591 (672)
Q Consensus       512 v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g  591 (672)
                      ++.|||++|+.+.+.|     .+|||+|||+|++|+||.|++.||++|+||. +|++|+|.+||+++.+||.|.+++|++
T Consensus       402 ~~~GY~~~~~~t~~~f-----~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~  475 (579)
T PLN03102        402 IMKGYLKNPKATSEAF-----KHGWLNTGDVGVIHPDGHVEIKDRSKDIIIS-GGENISSVEVENVLYKYPKVLETAVVA  475 (579)
T ss_pred             hhhhhcCChhhhHhhh-----ccCceecCceEEEcCCCeEEEEeccCcEEEE-CCEEECHHHHHHHHHhCCCcceeEEEe
Confidence            9999999999999998     5789999999999999999999999999997 699999999999999999999999999


Q ss_pred             cCCC---CeEEEEEEcChhHHHHH--------HHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHH
Q 005874          592 DPFH---SYCVALVVASQPAVEEW--------AAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIR  660 (672)
Q Consensus       592 ~~~~---~~~va~v~~~~~~~~~~--------~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~  660 (672)
                      .+++   +.++|+|++.++...+.        ........++++|+.|++|..++++++.|      +|++||++|++|+
T Consensus       476 ~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~~~~P------~t~~gKi~r~~L~  549 (579)
T PLN03102        476 MPHPTWGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELP------KNGNGKILKPKLR  549 (579)
T ss_pred             ccCccccceeEEEEEecCcccccccccccccccHHHHHHHHHhhcccccCCeEEEEcccCC------CCCcccccHHHHH
Confidence            8765   46999998775432110        01111256678999999999999999987      9999999999999


Q ss_pred             HHHHHHH
Q 005874          661 KAFADDL  667 (672)
Q Consensus       661 ~~~~~~i  667 (672)
                      +++++.+
T Consensus       550 ~~~~~~~  556 (579)
T PLN03102        550 DIAKGLV  556 (579)
T ss_pred             HHHHHhh
Confidence            9987643

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.9e-63  Score=565.02  Aligned_cols=518  Identities=17%  Similarity=0.142  Sum_probs=394.2

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF  137 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~  137 (672)
                      .|+.+.+...  .+|+++|+.+.+            .      .+..+.+||+||.+++.++|+.|+++|+++||+|+|+
T Consensus        86 ~n~~~~~~~~--~~~~~~Al~~~~------------~------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~  145 (655)
T PRK03584         86 LNYAENLLRH--RRDDRPAIIFRG------------E------DGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAY  145 (655)
T ss_pred             eeHHHHhhcc--CCCCCeEEEEEC------------C------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            3455544432  589999998742            1      2345689999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccc---------hHHHHhhhcCCCCccEEEEe
Q 005874          138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKE---------LKKLVDLSGQLDTVKHVICM  208 (672)
Q Consensus       138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~l~~~~~~~~~l~~ii~~  208 (672)
                      ++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++..         .+.+.+....++.++.++.+
T Consensus       146 ~~n~~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  225 (655)
T PRK03584        146 LPNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVV  225 (655)
T ss_pred             cCCCHHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEE
Confidence            999999999999999999999999999999999999999999999998753         23444444556666667666


Q ss_pred             cCCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHH-HHHHHhhcC
Q 005874          209 DANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAT-VSAVMTIVP  287 (672)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~-~~~~~~~~~  287 (672)
                      +....... ..   .......|+++................+++++|+|||||||.||||++||++++.. .......+ 
T Consensus       226 ~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-  300 (655)
T PRK03584        226 PYLGPAAA-AA---ALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHC-  300 (655)
T ss_pred             ecCCCccc-cc---ccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhc-
Confidence            53221000 00   11123457776653222222334456789999999999999999999999987644 44445556 


Q ss_pred             CCCCCcEEEEecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHH
Q 005874          288 DLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRK  367 (672)
Q Consensus       288 ~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~  367 (672)
                      .++++|+++++.++.|+... ..+.+|..|+++++.+......+    +..+...++++++|++.++|+++..+.+....
T Consensus       301 ~~~~~d~~~~~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  375 (655)
T PRK03584        301 DLGPGDRFFWYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPD----PNVLWDLAAEEGVTVFGTSAKYLDACEKAGLV  375 (655)
T ss_pred             CCCCCCEEEEcCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCC----HHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCC
Confidence            88999999999999987653 35678999999998332111111    11122338999999999999999887642100


Q ss_pred             hhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh--C
Q 005874          368 KVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL--G  445 (672)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~--~  445 (672)
                      .                                             ......++||.+++||+++++++.+++.+.+  +
T Consensus       376 ~---------------------------------------------~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~  410 (655)
T PRK03584        376 P---------------------------------------------GETHDLSALRTIGSTGSPLPPEGFDWVYEHVKAD  410 (655)
T ss_pred             c---------------------------------------------cccCChhheEEEEEecCCCCHHHHHHHHHHhCCC
Confidence            0                                             0001124899999999999999999999887  4


Q ss_pred             CceecccCccccccccccc-CCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccC--cccccccCCchh
Q 005874          446 APIGQGYGLTETCAGGTFS-EVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP--NVTVGYFKNEEK  522 (672)
Q Consensus       446 ~~v~~~YG~TE~~~~~~~~-~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~--~v~~gY~~~~~~  522 (672)
                      .++.+.||+||+++..... .......+++|.|.++++++|+| +++..+    .|+.|||+|+||  +++.|||++++.
T Consensus       411 ~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd-~~g~~~----~g~~GeL~v~gp~p~~~~gy~~~~~~  485 (655)
T PRK03584        411 VWLASISGGTDICSCFVGGNPLLPVYRGEIQCRGLGMAVEAWD-EDGRPV----VGEVGELVCTKPFPSMPLGFWNDPDG  485 (655)
T ss_pred             ceEEeccChHhhhcccccCCCCCCcCCCccCCCcCCceeEEEC-CCCCCC----CCCceEEEEccCCCCCcceeeCCCcc
Confidence            7899999999986543322 22234558899999999999999 666543    578999999996  799999999975


Q ss_pred             hh--hhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---Ce
Q 005874          523 TK--EVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SY  597 (672)
Q Consensus       523 t~--~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~  597 (672)
                      ++  ..+..  ..+|||+|||+|++|+||.|+|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++   +.
T Consensus       486 ~~~~~~~~~--~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~-~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~  562 (655)
T PRK03584        486 SRYRDAYFD--TFPGVWRHGDWIEITEHGGVVIYGRSDATLNR-GGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVR  562 (655)
T ss_pred             chHHHhhhc--cCCCEeecCCeEEECCCCeEEEEeeccCeeec-CcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEE
Confidence            53  22211  12579999999999999999999999999997 6999999999999999999999999998764   46


Q ss_pred             EEEEEEcChhHHH-HHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHH
Q 005874          598 CVALVVASQPAVE-EWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFA  664 (672)
Q Consensus       598 ~va~v~~~~~~~~-~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~  664 (672)
                      ++++|+++++... +...+.....++++|+.|++|..|+++++.|      +|++|||+|+.|++.+.
T Consensus       563 ~~a~vv~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP------~t~sGKi~r~~lr~~~~  624 (655)
T PRK03584        563 MPLFVVLAEGVTLDDALRARIRTTIRTNLSPRHVPDKIIAVPDIP------RTLSGKKVELPVKKLLH  624 (655)
T ss_pred             EEEEEEECCCCCCcHHHHHHHHHHHHhhCCCCcCCCEEEECCCCC------CCCCccchHHHHHHHHc
Confidence            9999998764311 1111112266778999999999999999988      99999999999999874

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=7.6e-63  Score=549.98  Aligned_cols=499  Identities=25%  Similarity=0.337  Sum_probs=407.0

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF  137 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~  137 (672)
                      .|+.++|++.++++||++|+...           +|+           .+||+|+.++++++|++|++.|+++||+|+++
T Consensus        23 ~~l~~~~~~~~~~~pd~~a~~~~-----------~~~-----------~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~   80 (547)
T PRK06087         23 ASLADYWQQTARAMPDKIAVVDN-----------HGA-----------SYTYSALDHAASRLANWLLAKGIEPGDRVAFQ   80 (547)
T ss_pred             CCHHHHHHHHHHHCCCceEEEcC-----------CCC-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            68999999999999999999752           344           69999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccc-----hHHHHhhhcCCCCccEEEEecCCC
Q 005874          138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKE-----LKKLVDLSGQLDTVKHVICMDANI  212 (672)
Q Consensus       138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~l~~~~~~~~~l~~ii~~~~~~  212 (672)
                      ++|+++++++++||+++|++++|+++..+.+++.++++.++++++++++..     .+.+.+....++.++.++.++...
T Consensus        81 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (547)
T PRK06087         81 LPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLA  160 (547)
T ss_pred             CCCCHHHHHHHHHHHHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcC
Confidence            999999999999999999999999999999999999999999999997632     344555555666666777765433


Q ss_pred             cccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCC
Q 005874          213 PSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSK  292 (672)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~  292 (672)
                      ...          ...++.++........ .......+++++|+|||||||.||+|++||.+++.....+...+ +++++
T Consensus       161 ~~~----------~~~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~  228 (547)
T PRK06087        161 PAT----------SSLSLSQIIADYEPLT-TAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL-NLTWQ  228 (547)
T ss_pred             CCc----------CccCHHHHhccCCccc-CCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-CCCCC
Confidence            211          1124555443322111 22334678999999999999999999999999998888777766 88999


Q ss_pred             cEEEEecChHhHHHHHH-HHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHh
Q 005874          293 DVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKK  368 (672)
Q Consensus       293 d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~  368 (672)
                      |++++.+|++|.+++.. .+.++..|+++++   .++..+.+.           ++++++|+++++|..+..++......
T Consensus       229 d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~~~~~~~~l~~~~~~  297 (547)
T PRK06087        229 DVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLAL-----------LEQQRCTCMLGATPFIYDLLNLLEKQ  297 (547)
T ss_pred             CeEEEecchHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHH-----------HHHcCCCEEeccHHHHHHHHhccccC
Confidence            99999999999999776 6677899999998   333344444           89999999998887776665432111


Q ss_pred             hhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCce
Q 005874          369 VDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPI  448 (672)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v  448 (672)
                      .                                               ...+++|.+++||+++++++.+.+... ++++
T Consensus       298 ~-----------------------------------------------~~~~~lr~i~~gG~~~~~~~~~~~~~~-~~~l  329 (547)
T PRK06087        298 P-----------------------------------------------ADLSALRFFLCGGTTIPKKVARECQQR-GIKL  329 (547)
T ss_pred             C-----------------------------------------------CCCCCeEEEEEcCCCCCHHHHHHHHHc-CCcE
Confidence            0                                               112489999999999999998888775 9999


Q ss_pred             ecccCcccccccccccCCC--CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhh
Q 005874          449 GQGYGLTETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEV  526 (672)
Q Consensus       449 ~~~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~  526 (672)
                      ++.||+||+++........  ....+++|.|+++++++++| +++..+   +.|..|||+++|+.++.||+++++.+...
T Consensus       330 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~---~~g~~Gel~v~g~~~~~gy~~~~~~~~~~  405 (547)
T PRK06087        330 LSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD-EARKTL---PPGCEGEEASRGPNVFMGYLDEPELTARA  405 (547)
T ss_pred             EEEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEc-CCCCCC---cCCCcceEEEecccccccccCCHHHHHHH
Confidence            9999999998765544322  12346789999999999999 666554   47889999999999999999999999988


Q ss_pred             cccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEE
Q 005874          527 YKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVV  603 (672)
Q Consensus       527 ~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~  603 (672)
                      |.    .+|||+|||+|+++++|.++++||.+|+|+. +|++|+|.+||+++..+|+|.+++|++.+++   ..++++|+
T Consensus       406 ~~----~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~  480 (547)
T PRK06087        406 LD----EEGWYYSGDLCRMDEAGYIKITGRKKDIIVR-GGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVV  480 (547)
T ss_pred             hC----CCCCcCcCceEEECCCCCEEEEecchhhhhc-CCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEE
Confidence            87    7899999999999999999999999999996 6999999999999999999999999997655   35888888


Q ss_pred             cChhH----HHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHHHH
Q 005874          604 ASQPA----VEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLA  668 (672)
Q Consensus       604 ~~~~~----~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~  668 (672)
                      +++..    ..++..    ....+.|+.+++|..|.+++..|      +|.+||++|++|++.+.+.+.
T Consensus       481 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~P~~i~~v~~iP------~t~sGK~~r~~l~~~~~~~~~  539 (547)
T PRK06087        481 LKAPHHSLTLEEVVA----FFSRKRVAKYKYPEHIVVIDKLP------RTASGKIQKFLLRKDIMRRLT  539 (547)
T ss_pred             ECCCCCCCCHHHHHH----HHHhccccccCCCeEEEEeccCC------CCCCCcCcHHHHHHHHHHHhh
Confidence            76521    111111    22246899999999999999987      999999999999999988764

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.9e-63  Score=549.89  Aligned_cols=507  Identities=28%  Similarity=0.364  Sum_probs=424.0

Q ss_pred             CCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 005874           56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA  135 (672)
Q Consensus        56 ~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~  135 (672)
                      ...|+.++|.+.++.+|+++|+..            .++           .+||+|+++++.++|+.|.+.|+++|++|+
T Consensus         4 ~~~~l~~~l~~~~~~~p~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~   60 (521)
T PRK06187          4 YPLTIGRILRHGARKHPDKEAVYF------------DGR-----------RTTYAELDERVNRLANALRALGVKKGDRVA   60 (521)
T ss_pred             ccCCHHHHHHHHHHHCCCceEEEe------------CCc-----------eEcHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            447899999999999999999986            333           499999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCccc
Q 005874          136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSA  215 (672)
Q Consensus       136 i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~  215 (672)
                      ++++|+.+++++++||+++|++++|+++..+.+.+..+++.++++.++++.+..+.+.+....++.++.++.+++.....
T Consensus        61 l~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (521)
T PRK06187         61 VFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAP  140 (521)
T ss_pred             EECCCCHHHHHHHHHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCccccc
Confidence            99999999999999999999999999999999999999999999999999998888888877788787887776654210


Q ss_pred             ccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEE
Q 005874          216 VSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY  295 (672)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~  295 (672)
                             .......+.++....... .......++++++++|||||||.||+|.+||+++.+........+ .++++|++
T Consensus       141 -------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~d~~  211 (521)
T PRK06187        141 -------LAPEVGEYEELLAAASDT-FDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL-KLSRDDVY  211 (521)
T ss_pred             -------cccccccHHHHhhcCCcc-CCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhh-CCCCCCEE
Confidence                   112344566665433222 123345678899999999999999999999999999888877777 89999999


Q ss_pred             EEecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCch
Q 005874          296 LAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGL  375 (672)
Q Consensus       296 l~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~  375 (672)
                      ++.+|++|.+++...+.++..|+++++.+..    .    ...+...++++++|.++++|+++..+.+......      
T Consensus       212 ~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~----~----~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~------  277 (521)
T PRK06187        212 LVIVPMFHVHAWGLPYLALMAGAKQVIPRRF----D----PENLLDLIETERVTFFFAVPTIWQMLLKAPRAYF------  277 (521)
T ss_pred             EEeCCchHHhhHHHHHHHHHhCCEEEecCCC----C----HHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCc------
Confidence            9999999999998877799999999984432    1    1112333999999999999999999876432210      


Q ss_pred             hHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCcc
Q 005874          376 SKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLT  455 (672)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~T  455 (672)
                                                               ....++|.+++||+++++++.+.+.+.+++++++.||+|
T Consensus       278 -----------------------------------------~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~t  316 (521)
T PRK06187        278 -----------------------------------------VDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMT  316 (521)
T ss_pred             -----------------------------------------cCcchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccC
Confidence                                                     111389999999999999999999998899999999999


Q ss_pred             cccccccccCCCCC------CCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhccc
Q 005874          456 ETCAGGTFSEVDDS------SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV  529 (672)
Q Consensus       456 E~~~~~~~~~~~~~------~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~  529 (672)
                      |+++++........      ..+++|.|.++++++|+| +++..++ ...|+.|||+++|+.++.||+++++.+.+.|  
T Consensus       317 E~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~-~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~--  392 (521)
T PRK06187        317 ETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVD-DDGDELP-PDGGEVGEIIVRGPWLMQGYWNRPEATAETI--  392 (521)
T ss_pred             ccCcccccCCcccccccccccCCccccccCCeEEEEEC-CCCCCCC-CCCCCeeEEEEECcchhhhhcCCHHHHHHHh--
Confidence            99877665544333      557899999999999999 6666544 2238899999999999999999999999888  


Q ss_pred             CCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcCh
Q 005874          530 DDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQ  606 (672)
Q Consensus       530 ~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~  606 (672)
                         .++||+|||+|+++++|.+++.||.+|++|+ +|.+++|.+||+++.++++|.+++|++..++   +.+++++++.+
T Consensus       393 ---~~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  468 (521)
T PRK06187        393 ---DGGWLHTGDVGYIDEDGYLYITDRIKDVIIS-GGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKP  468 (521)
T ss_pred             ---hCCceeccceEEEcCCCCEEEeecccceEEc-CCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECC
Confidence               5679999999999999999999999999997 6999999999999999999999999997654   46888888765


Q ss_pred             hHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874          607 PAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                      +...+....  ...+++.|+.+++|..++++++.|      +|++||++|..++++|++
T Consensus       469 ~~~~~~~~l--~~~l~~~l~~~~~p~~i~~v~~~P------~t~~gK~~r~~l~~~~~~  519 (521)
T PRK06187        469 GATLDAKEL--RAFLRGRLAKFKLPKRIAFVDELP------RTSVGKILKRVLREQYAE  519 (521)
T ss_pred             CCCCCHHHH--HHHHHHhccCCCCceEEEEccCCC------CCCCCCeeHHHHHHHHhc
Confidence            432111111  145568899999999999999887      999999999999999976

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=4.8e-63  Score=550.23  Aligned_cols=494  Identities=24%  Similarity=0.317  Sum_probs=397.4

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF  137 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~  137 (672)
                      .|+.++|++.++.+|+++|+...+          +.       .+.+..+||+||.++++++|.+|.+.|+++|++|+++
T Consensus        22 ~~~~~~~~~~~~~~p~~~a~~~~~----------~~-------~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~   84 (538)
T TIGR03208        22 RTINDHFDAAVANCPDKPALTAYR----------DG-------HGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQ   84 (538)
T ss_pred             CcHHHHHHHHHHHCCCceEEEeec----------cc-------CCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            689999999999999999997521          11       1234579999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccch-----HHHHhhhcCCCCccEEEEecCCC
Q 005874          138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL-----KKLVDLSGQLDTVKHVICMDANI  212 (672)
Q Consensus       138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~~~~~l~~ii~~~~~~  212 (672)
                      ++|+++++++++||+++|++++|+++.++.+++.++++.++++.+++++...     ....+.....+..+.++..+...
T Consensus        85 ~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (538)
T TIGR03208        85 LPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDG  164 (538)
T ss_pred             CCCCHHHHHHHHHHHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCC
Confidence            9999999999999999999999999999999999999999999999987542     22333334455556666654321


Q ss_pred             cccccccccCCCeEEEeHHHHHhcccCC--C-----CCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhh
Q 005874          213 PSAVSSVEQSGRWKITSFADVQILGREN--P-----VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI  285 (672)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~  285 (672)
                      ..              .++++.......  +     .......++++++++|||||||.||||+++|+++.+.+......
T Consensus       165 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~  230 (538)
T TIGR03208       165 DD--------------SFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAER  230 (538)
T ss_pred             Cc--------------CHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhh
Confidence            11              122222111100  0     11123467899999999999999999999999999998888877


Q ss_pred             cCCCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHH
Q 005874          286 VPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRV  361 (672)
Q Consensus       286 ~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l  361 (672)
                      + .++.+|++++.+|++|..++.. .+.+++.|+++++   .++..+.+.           ++++++|++.++|.++..+
T Consensus       231 ~-~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------l~~~~vt~~~~~p~~~~~l  298 (538)
T TIGR03208       231 L-ELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAEL-----------IRETGVTFTMASTPFLTDL  298 (538)
T ss_pred             c-CCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHH-----------HHHhCCeEEecCHHHHHHH
Confidence            7 7889999999999999998765 6678999999988   345555555           9999999999999999887


Q ss_pred             HHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHH
Q 005874          362 RDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFIN  441 (672)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~  441 (672)
                      ........                                               ...+++|.+++||+++++++.+.+.
T Consensus       299 ~~~~~~~~-----------------------------------------------~~~~~l~~~~~gG~~~~~~~~~~~~  331 (538)
T TIGR03208       299 CRAVKESG-----------------------------------------------APVPSLFTFLCAGAPIPGILVERAW  331 (538)
T ss_pred             HhchhccC-----------------------------------------------CCCCcceEEEEcCCCCCHHHHHHHH
Confidence            65322110                                               0113799999999999999999999


Q ss_pred             HHhCCceecccCcccccccccccCCCCC--CCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCC
Q 005874          442 ICLGAPIGQGYGLTETCAGGTFSEVDDS--SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKN  519 (672)
Q Consensus       442 ~~~~~~v~~~YG~TE~~~~~~~~~~~~~--~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~  519 (672)
                      ..+++++++.||+||++++.+.......  ...++|.|.++++++|+| +++..+   +.|+.|||+++|++++.||+++
T Consensus       332 ~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~-~~~~~~---~~g~~Gel~v~g~~~~~gy~~~  407 (538)
T TIGR03208       332 ELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVID-ANGAKL---SQGETGRLLVRGCSNFGGYLKR  407 (538)
T ss_pred             HHcCCeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEEC-CCCCCC---cCCCCcEEEEecCcccccccCC
Confidence            8889999999999999876654432221  235789999999999999 666554   4788999999999999999999


Q ss_pred             chhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---C
Q 005874          520 EEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---S  596 (672)
Q Consensus       520 ~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~  596 (672)
                      |+.+.  ++    ++|||+|||+|++++||.++++||.+|+|+. +|++|+|.+||+++.+||+|.+++|++.+++   +
T Consensus       408 ~~~~~--~~----~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~  480 (538)
T TIGR03208       408 PHLNS--TD----AEGWFDTGDLAFQDAEGYIRINGRSKDVIIR-GGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGE  480 (538)
T ss_pred             ccccc--cc----CCCceeccceEEECCCCcEEEEeccCceEEE-CCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCc
Confidence            98765  33    7899999999999999999999999999996 6999999999999999999999999998655   4


Q ss_pred             eEEEEEEcChhHHHHHHHHcChhhhh-cCCCCCcceeEEEEeecCCCCCCCccccccccChHHHH
Q 005874          597 YCVALVVASQPAVEEWAAKQGIVGKN-ARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIR  660 (672)
Q Consensus       597 ~~va~v~~~~~~~~~~~~~~~~~~~~-~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~  660 (672)
                      .++++|++.++...+.....  ..+. .+|+.+++|+.++++++.|      +|++||++|++|+
T Consensus       481 ~~~a~v~~~~~~~~~~~~l~--~~~~~~~l~~~~~P~~i~~v~~iP------~t~~gKv~r~~L~  537 (538)
T TIGR03208       481 RACAVVVPKPGCTLDFAAMV--AFLKAQKVALQYIPERLEVVDALP------ATPAGKIQKFRLR  537 (538)
T ss_pred             eEEEEEEECCCCCCCHHHHH--HHHHhcchhhccCCcEEEEeccCC------CCCccccchHhhc
Confidence            58999988764321111111  3444 4799999999999999987      9999999999986

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=2.4e-63  Score=561.60  Aligned_cols=518  Identities=16%  Similarity=0.122  Sum_probs=389.2

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF  137 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~  137 (672)
                      .|+.+.+..   +.++++|+.+..            .      .+..+.+||+||.+++.++|..|+++|+++||+|+++
T Consensus        87 ~n~~~~~~~---~~~~~~a~~~~~------------~------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~  145 (652)
T TIGR01217        87 LNYAENLLR---AAGTEPALLYVD------------E------THEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGY  145 (652)
T ss_pred             eeHHHHHhc---cCCCCeEEEEEC------------C------CCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            345554433   357899998742            1      2344689999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccc---------hHHHHhhhcCCCCccEEEEe
Q 005874          138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKE---------LKKLVDLSGQLDTVKHVICM  208 (672)
Q Consensus       138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~l~~~~~~~~~l~~ii~~  208 (672)
                      ++|++++++++|||+++|++++|+++.++++++.+++++++++++|+++..         .+.+.++...++.++.++.+
T Consensus       146 ~~n~~e~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~  225 (652)
T TIGR01217       146 LPNIPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHI  225 (652)
T ss_pred             cCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEE
Confidence            999999999999999999999999999999999999999999999998753         35555555667777777776


Q ss_pred             cCCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHH-HHHHHhhcC
Q 005874          209 DANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAT-VSAVMTIVP  287 (672)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~-~~~~~~~~~  287 (672)
                      +..........   .......|+++................+++++|+|||||||.||||+++|++++.. .......+ 
T Consensus       226 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-  301 (652)
T TIGR01217       226 PYLGPRETEAP---KIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHC-  301 (652)
T ss_pred             eCCCCcccccc---cccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhcc-
Confidence            43221100000   00112457776544222222223445689999999999999999999999997643 34444445 


Q ss_pred             CCCCCcEEEEecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHH
Q 005874          288 DLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRK  367 (672)
Q Consensus       288 ~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~  367 (672)
                      +++++|++++++|+.|+... ..+.+|..|+++++.+......+    ...+...++++++|++.++|.++..+......
T Consensus       302 ~~~~~d~~~~~~~~~~~~~~-~~~~~l~~G~t~vl~~g~~~~~~----~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~  376 (652)
T TIGR01217       302 DLGPGDRLFYYTTTGWMMWN-WLVSGLATGATLVLYDGSPGFPA----TNVLWDIAERTGATLFGTSAKYVMACRKAGVH  376 (652)
T ss_pred             CCCCCcEEEEeCCcchhhhH-HHHHHHhcCcEEEEECCCCCCCC----chHHHHHHHHhCCeEEecCHHHHHHHHhcCCC
Confidence            88999999999999998643 24578999999998331111111    11122238999999998888777655431000


Q ss_pred             hhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhC--
Q 005874          368 KVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLG--  445 (672)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~--  445 (672)
                            +                                       ......++||.+++||+++++++.+++.+.++  
T Consensus       377 ------~---------------------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~  411 (652)
T TIGR01217       377 ------P---------------------------------------ARTHDLSALQCVASTGSPLPPDGFRWVYDEIKAD  411 (652)
T ss_pred             ------c---------------------------------------cccCChhheeEEEeecCCCCHHHHHHHHHHhCCC
Confidence                  0                                       00111248999999999999999999998875  


Q ss_pred             CceecccCcccccccccc-cCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccC--cccccccCCchh
Q 005874          446 APIGQGYGLTETCAGGTF-SEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP--NVTVGYFKNEEK  522 (672)
Q Consensus       446 ~~v~~~YG~TE~~~~~~~-~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~--~v~~gY~~~~~~  522 (672)
                      ..+.+.||+||++..... ........+++|.|.++++++|+| +++..+    +|+.|||+++||  +++.|||++++.
T Consensus       412 ~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~ivd-~~g~~~----~g~~GEl~v~gp~p~~~~gy~~~~~~  486 (652)
T TIGR01217       412 VWLASISGGTDICSCFAGANPTLPVHIGEIQAPGLGTAVQSWD-PEGKPV----TGEVGELVCTNPMPSMPIRFWNDPDG  486 (652)
T ss_pred             ceEEeccCHHHHhccccCCCCCCCCcCCccCCCcCCCceEEEC-CCCCCC----CCCccEEEEecCCCccccceeCCCcc
Confidence            356789999997533322 222233457899999999999999 677654    478999999996  689999999986


Q ss_pred             hh--hhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---Ce
Q 005874          523 TK--EVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SY  597 (672)
Q Consensus       523 t~--~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~  597 (672)
                      ++  +.+..  ..+|||+|||+|++|+||.|+|+||+||+||. +|++|+|.|||++|.+||.|.+|+|+|.+++   +.
T Consensus       487 t~~~~~~~~--~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~  563 (652)
T TIGR01217       487 SKYRDAYFD--TYPGVWRHGDWITLTPRGGIVIHGRSDSTLNP-QGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYR  563 (652)
T ss_pred             chhHHhhhc--CCCCEEEcCCcEEECCCCcEEEEecccCeEec-CCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEE
Confidence            54  22221  13689999999999999999999999999996 6999999999999999999999999998765   46


Q ss_pred             EEEEEEcChhHHH-HHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHH
Q 005874          598 CVALVVASQPAVE-EWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFA  664 (672)
Q Consensus       598 ~va~v~~~~~~~~-~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~  664 (672)
                      ++|||+++++... +.........++++|+.|++|+.|++++..|      +|++||++|+.|++.+.
T Consensus       564 ~~afVv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP------~T~sGKi~r~~Lr~~~~  625 (652)
T TIGR01217       564 VVLFVHLAPGATLDDALLDRIKRTIRAGLSPRHVPDEIIEVPGIP------HTLTGKRVEVAVKRVLQ  625 (652)
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHHHhhCCCCcCCCEEEECCCCC------CCCCccChHHHHHHHHc
Confidence            9999998765321 1111122266678999999999999999988      99999999999999873

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=5.4e-63  Score=543.18  Aligned_cols=474  Identities=26%  Similarity=0.354  Sum_probs=395.7

Q ss_pred             CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874           57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI  136 (672)
Q Consensus        57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i  136 (672)
                      ++|+.+.|++.+.++||++|+.+            ++           +.+||.|+.+++.++|..|.+.|+++|++|++
T Consensus         1 ~~~~~~~l~~~a~~~p~~~a~~~------------~~-----------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i   57 (483)
T PRK03640          1 METMPNWLKQRAFLTPDRTAIEF------------EE-----------KKVTFMELHEAVVSVAGKLAALGVKKGDRVAL   57 (483)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEe------------CC-----------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            36899999999999999999986            33           37999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccc
Q 005874          137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV  216 (672)
Q Consensus       137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~  216 (672)
                      +++|+.++++++|||+++|++++|+++..+.+++.+++++++++.++++......+....                    
T Consensus        58 ~~~~~~~~~~~~la~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~--------------------  117 (483)
T PRK03640         58 LMKNGMEMILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI--------------------  117 (483)
T ss_pred             ECCCCHHHHHHHHHHHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc--------------------
Confidence            999999999999999999999999999999999999999999999999876554332210                    


Q ss_pred             cccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEE
Q 005874          217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL  296 (672)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l  296 (672)
                                ...++++...............++++++++|||||||.||+|++||.|+...+......+ +++++|+++
T Consensus       118 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~d~~l  186 (483)
T PRK03640        118 ----------SVKFAELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNL-GLTEDDCWL  186 (483)
T ss_pred             ----------cccHHHHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhc-CCCcCcEEE
Confidence                      001333332221212222334578999999999999999999999999998877777667 899999999


Q ss_pred             EecChHhHHHHHHHHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcC
Q 005874          297 AYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKG  373 (672)
Q Consensus       297 ~~~pl~h~~~~~~~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~  373 (672)
                      +.+|++|++++...+.++..|+++++   .++..+.+.           ++++++|++.++|+++..+.+.....     
T Consensus       187 ~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~l~~~P~~~~~l~~~~~~~-----  250 (483)
T PRK03640        187 AAVPIFHISGLSILMRSVIYGMRVVLVEKFDAEKINKL-----------LQTGGVTIISVVSTMLQRLLERLGEG-----  250 (483)
T ss_pred             EecCHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHH-----------HHHhCCcEEEeHHHHHHHHHhCcCcc-----
Confidence            99999999998888888999999998   444444444           99999999999999999887532111     


Q ss_pred             chhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccC
Q 005874          374 GLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYG  453 (672)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG  453 (672)
                                                                 ....++|.+++||+++++.+.+.++.. ++++++.||
T Consensus       251 -------------------------------------------~~~~~lr~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG  286 (483)
T PRK03640        251 -------------------------------------------TYPSSFRCMLLGGGPAPKPLLEQCKEK-GIPVYQSYG  286 (483)
T ss_pred             -------------------------------------------ccCCcceEEEEcCCCCCHHHHHHHHHh-CCCeeeeec
Confidence                                                       011389999999999999999988875 999999999


Q ss_pred             cccccccccccCCC--CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCC
Q 005874          454 LTETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDD  531 (672)
Q Consensus       454 ~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~  531 (672)
                      +||++..+......  ....+++|.|+++++++|.| + +..   ++.|..|||+++||+++.||+++++.+++.|    
T Consensus       287 ~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~-~-~~~---~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~----  357 (483)
T PRK03640        287 MTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEK-D-GVV---VPPFEEGEIVVKGPNVTKGYLNREDATRETF----  357 (483)
T ss_pred             cCcccccccccCcccccccCCCcccccCCcEEEEec-C-CCc---CCCCCceEEEEECcchhhhhcCCHHHHHHHH----
Confidence            99987544333322  23458899999999999998 3 232   4678899999999999999999999999988    


Q ss_pred             CCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcChhH
Q 005874          532 KGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQPA  608 (672)
Q Consensus       532 ~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~~~  608 (672)
                       .+|||+|||++++++||.++++||++|++|. +|++|+|.+||+.+.++++|.+++|++.+++   ..+++++++....
T Consensus       358 -~~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~-~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~  435 (483)
T PRK03640        358 -QDGWFKTGDIGYLDEEGFLYVLDRRSDLIIS-GGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGEV  435 (483)
T ss_pred             -hcCCeeccceEEEcCCCCEEEeecccCeEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCCCC
Confidence             6789999999999999999999999999996 6999999999999999999999999997665   3477777766543


Q ss_pred             HHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874          609 VEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       609 ~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                      ..+...    ..+++.|+.|++|+.|+++++.|      +|++||++|++|++++++
T Consensus       436 ~~~~l~----~~~~~~l~~~~~p~~i~~~~~iP------~t~~gK~~r~~l~~~~~~  482 (483)
T PRK03640        436 TEEELR----HFCEEKLAKYKVPKRFYFVEELP------RNASGKLLRHELKQLVEE  482 (483)
T ss_pred             CHHHHH----HHHHHhccCCCCCcEEEEeCCCC------CCCccceeHHHHHHHHhh
Confidence            333222    55668899999999999999987      999999999999999875

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.9e-63  Score=549.11  Aligned_cols=506  Identities=22%  Similarity=0.270  Sum_probs=405.2

Q ss_pred             CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874           57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI  136 (672)
Q Consensus        57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i  136 (672)
                      ..++.++|++.++++|++.++.++.          +         |+++.+||.||.++++++|.+|.+.|+++|++|++
T Consensus         9 ~~~~~~~l~~~~~~~~~~~~~~~~~----------~---------~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i   69 (539)
T PRK07008          9 PLLISSLIAHAARHAGDTEIVSRRV----------E---------GDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGT   69 (539)
T ss_pred             CCCHHHHHHHHHhhCCCceEEEeec----------c---------CcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            3589999999999999998887531          1         23457999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccc
Q 005874          137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV  216 (672)
Q Consensus       137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~  216 (672)
                      +++|+++++++++||+++|++++|+++.++++++.++++.+++++++++.+..+.+.+.....+.++.++...+..... 
T Consensus        70 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  148 (539)
T PRK07008         70 LAWNGYRHLEAYYGVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLP-  148 (539)
T ss_pred             EcCCcHHHHHHHHHHHhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCccc-
Confidence            9999999999999999999999999999999999999999999999999888777777666666676666554332100 


Q ss_pred             cccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHH--HHhhcCCCCCCcE
Q 005874          217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA--VMTIVPDLGSKDV  294 (672)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~--~~~~~~~~~~~d~  294 (672)
                          . ....+.+++++....... .......++++++++|||||||.||+|++||++++.....  +...+ +++.+|+
T Consensus       149 ----~-~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~~~d~  221 (539)
T PRK07008        149 ----A-GSTPLLCYETLVGAQDGD-YDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAM-GLSARDA  221 (539)
T ss_pred             ----c-CCcccccHHHHhcccCCC-cCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhccccc-CCCCCce
Confidence                0 113356677766443221 1223456788999999999999999999999998754322  22345 7888999


Q ss_pred             EEEecChHhHHHHHHHHHHhHhCcEEeeC----CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhh
Q 005874          295 YLAYLPLAHVLELVAENLIAGVGSAIGYG----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD  370 (672)
Q Consensus       295 ~l~~~pl~h~~~~~~~~~~l~~G~~i~~~----~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~  370 (672)
                      +++.+|++|..++...+.++..|+++++.    ++..+.+.           ++++++|++.++|.++..+.+...... 
T Consensus       222 ~l~~~p~~h~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~-----------l~~~~vt~~~~~P~~~~~l~~~~~~~~-  289 (539)
T PRK07008        222 VLPVVPMFHVNAWGLPYSAPLTGAKLVLPGPDLDGKSLYEL-----------IEAERVTFSAGVPTVWLGLLNHMREAG-  289 (539)
T ss_pred             EEecCchHHhhhHHHHHHHHhcCceEEEecCCcCHHHHHHH-----------HHHcCCEEEEechHHHHHHHhcccccC-
Confidence            99999999998877777889999999984    33333333           899999999999999998876432110 


Q ss_pred             hcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceec
Q 005874          371 AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQ  450 (672)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~  450 (672)
                                                                    ...+++|.+++||+++++++.+.+++.+++++++
T Consensus       290 ----------------------------------------------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~  323 (539)
T PRK07008        290 ----------------------------------------------LRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIH  323 (539)
T ss_pred             ----------------------------------------------CCcccceEEEEcCCCCCHHHHHHHHHHhCCceec
Confidence                                                          0113899999999999999999999989999999


Q ss_pred             ccCcccccccccccCCCC-----------CCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCC
Q 005874          451 GYGLTETCAGGTFSEVDD-----------SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKN  519 (672)
Q Consensus       451 ~YG~TE~~~~~~~~~~~~-----------~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~  519 (672)
                      .||+||++..++......           ....++|.|+|+++++|+| +++..++ .+.+..|||+++|++++.||+++
T Consensus       324 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~-~~~~~~Gei~v~g~~~~~gy~~~  401 (539)
T PRK07008        324 AWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVG-DDGRELP-WDGKAFGDLQVRGPWVIDRYFRG  401 (539)
T ss_pred             ccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEEC-CCCCccC-CCCCcceEEEEeCCccchhhcCC
Confidence            999999986554332110           1135789999999999999 6666543 12235799999999999999999


Q ss_pred             chhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---C
Q 005874          520 EEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---S  596 (672)
Q Consensus       520 ~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~  596 (672)
                      ++   ..+     .+|||+|||+|++++||.+++.||++|+||. +|++|+|.+||+++..+|.|.+++|++.++.   +
T Consensus       402 ~~---~~~-----~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~  472 (539)
T PRK07008        402 DA---SPL-----VDGWFPTGDVATIDADGFMQITDRSKDVIKS-GGEWISSIDIENVAVAHPAVAEAACIACAHPKWDE  472 (539)
T ss_pred             hh---hhh-----cCCCcccCceEEEcCCCcEEEeecccCEEEe-CCeEEcHHHHHHHHHhCCceeEEEEEecCCchhcc
Confidence            83   334     4689999999999999999999999999996 6999999999999999999999999997764   3


Q ss_pred             eEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874          597 YCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD  666 (672)
Q Consensus       597 ~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~  666 (672)
                      .++++|+..++...+..  ....+++++|+.|+.|+.+++++..|      +|++||++|++|++++.+.
T Consensus       473 ~~~~~v~~~~~~~~~~~--~l~~~~~~~l~~~~~P~~i~~v~~lP------~t~sgKi~r~~l~~~~~~~  534 (539)
T PRK07008        473 RPLLVVVKRPGAEVTRE--ELLAFYEGKVAKWWIPDDVVFVDAIP------HTATGKLQKLKLREQFRDY  534 (539)
T ss_pred             ceEEEEEeCCCCccCHH--HHHHHHHhhcccccCCeEEEEecCCC------CCCccceeHHHHHHHHHhh
Confidence            57888876654321111  11256678999999999999999987      9999999999999998763

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.8e-63  Score=563.17  Aligned_cols=513  Identities=21%  Similarity=0.218  Sum_probs=386.5

Q ss_pred             CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874           55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV  134 (672)
Q Consensus        55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V  134 (672)
                      +...|+.++|+++++.+||++|+.+.+..        ++.      .+.++.+||+||.++++++|++|.+. +++||+|
T Consensus        18 ~~~~~l~~~l~~~a~~~~~~~a~~~~~~~--------~~~------~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V   82 (631)
T PRK07769         18 PPNTNLVRHVERWAKVRGDKLAYRFLDFS--------TER------DGVARDLTWSQFGARNRAVGARLQQV-TKPGDRV   82 (631)
T ss_pred             cccCCHHHHHHHHHHhCCCCeEEEEeccC--------CCC------CCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEE
Confidence            44578999999999999999999864210        111      23456899999999999999999987 8999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCcEEEec-CCCCC--HHHHHHHHhcccceEEEECccchHHHHhhhcCCCC--ccEEEEec
Q 005874          135 AIFADTRAEWFVALQGCFRRNVTVVTI-YASLG--EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDT--VKHVICMD  209 (672)
Q Consensus       135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~--l~~ii~~~  209 (672)
                      +++++|+++|++++|||+++|++++|+ ++..+  .+++.+++++++++++|++.+..+.+.+.....+.  ...++.++
T Consensus        83 ~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (631)
T PRK07769         83 AILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVD  162 (631)
T ss_pred             EEEcCCChHHHHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEcc
Confidence            999999999999999999999999999 44544  57899999999999999998776655544322221  12233222


Q ss_pred             CCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCC
Q 005874          210 ANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL  289 (672)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~  289 (672)
                      ....                      .. ..........++++++|+|||||||.||||++||+++++.+......+ ++
T Consensus       163 ~~~~----------------------~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~  218 (631)
T PRK07769        163 AVPD----------------------EV-GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDAL-EG  218 (631)
T ss_pred             cccc----------------------cc-ccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHc-CC
Confidence            1100                      00 000111234578999999999999999999999999999888877777 88


Q ss_pred             CCCcEEEEecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccc---eeeecchHHHHHHHHHHH
Q 005874          290 GSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRP---TVMASVPAILDRVRDGVR  366 (672)
Q Consensus       290 ~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~---t~~~~~P~~l~~l~~~~~  366 (672)
                      .++|++++++|++|.+++...+.+++.|+++++..+..+..+.    ..++..++++++   |++.++|.++..+.....
T Consensus       219 ~~~d~~l~~~Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~  294 (631)
T PRK07769        219 QEGDRGVSWLPFFHDMGLITVLLPALLGHYITFMSPAAFVRRP----GRWIRELARKPGGTGGTFSAAPNFAFEHAAARG  294 (631)
T ss_pred             CCcceEEEeCCCcCchhhHHHHHHHhhCCeEEEEChHHHHhCH----HHHHHHHHhhccccCceEeeCCchHHHHHHhhc
Confidence            8999999999999999998878888889999885443222111    111122666665   788999988776654200


Q ss_pred             HhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh--
Q 005874          367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL--  444 (672)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~--  444 (672)
                        .....                                        ......+++|.+++||+++++++.+.|.+.+  
T Consensus       295 --~~~~~----------------------------------------~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~  332 (631)
T PRK07769        295 --LPKDG----------------------------------------EPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAP  332 (631)
T ss_pred             --cchhc----------------------------------------ccCcchhheeeEEeccCCCCHHHHHHHHHHHhh
Confidence              00000                                        0001124899999999999999999999887  


Q ss_pred             -CC---ceecccCcccccccccccCCCC---------------------------CCCCccCCCcCCeEEEEEecCCCCc
Q 005874          445 -GA---PIGQGYGLTETCAGGTFSEVDD---------------------------SSVGRVGAPLPCSFIKLIDWPEGGY  493 (672)
Q Consensus       445 -~~---~v~~~YG~TE~~~~~~~~~~~~---------------------------~~~~~~G~p~~~~~v~i~d~~~~~~  493 (672)
                       |+   .++++||+||++..++......                           ....++|.|.++++++|+|.+++..
T Consensus       333 ~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~  412 (631)
T PRK07769        333 YGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASE  412 (631)
T ss_pred             cCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcC
Confidence             33   5999999999876655432211                           0124789999999999999545554


Q ss_pred             ccCCCCCCccEEEEccCcccccccCCchhhhhhcccC-------------CCCCceEecCcEEEEccCceEEEEecCCCe
Q 005874          494 LTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVD-------------DKGMRWFYTGDVGQVHADGCLEIIDRKKDI  560 (672)
Q Consensus       494 ~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~-------------~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~  560 (672)
                      +   +.|+.||||++||+++.|||++++.|++.|...             ..++|||+|||+|+++ ||.|+|+||+||+
T Consensus       413 ~---~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~  488 (631)
T PRK07769        413 L---PDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDL  488 (631)
T ss_pred             C---CCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcccccE
Confidence            4   578999999999999999999999999998521             1246899999999995 9999999999999


Q ss_pred             EecCCceeeccHHHHHHHhc-Ccccce--EEEEecCC-------------------C---CeEEEEEEcChhH-HHHHHH
Q 005874          561 VKLQHGEYVSLGKVEAALIV-SPYVDN--IMMHADPF-------------------H---SYCVALVVASQPA-VEEWAA  614 (672)
Q Consensus       561 ik~~~G~~v~p~~iE~~l~~-~~~V~~--~~V~g~~~-------------------~---~~~va~v~~~~~~-~~~~~~  614 (672)
                      ||+ +|++|+|.|||++|.+ ||.|.+  ++|++.++                   +   +.++++|++.++. ..+...
T Consensus       489 Ik~-~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~~~~~~~~  567 (631)
T PRK07769        489 VII-DGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAHKLDPQP  567 (631)
T ss_pred             EEE-CCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCccccccHHH
Confidence            997 6999999999999985 899998  89998776                   2   3588888877642 111111


Q ss_pred             HcChhhhhcCCCC-Cc-ceeEEEEee--cCCCCCCCccccccccChHHHHHHHHH
Q 005874          615 KQGIVGKNARLDK-FE-IPAKIKLLS--YPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       615 ~~~~~~~~~~L~~-~~-~p~~i~~~~--~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                        ....++++|+. +. .|+.+++++  +.|      +|++|||+|++|++.|.+
T Consensus       568 --l~~~~~~~l~~~~~~~p~~~~~v~~~~lP------~t~~GKi~r~~l~~~~~~  614 (631)
T PRK07769        568 --IADDIRAAIAVRHGVTVRDVLLVPAGSIP------RTSSGKIARRACRAAYLD  614 (631)
T ss_pred             --HHHHHHHHHHHHcCCCccEEEEECCCccc------cCCCcHHHHHHHHHHHHc
Confidence              11566677885 56 488888887  355      999999999999998864

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3e-63  Score=545.28  Aligned_cols=478  Identities=21%  Similarity=0.263  Sum_probs=390.0

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF  137 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~  137 (672)
                      +++.+.|++.++++||++|+.+            ++.           .+||.|+.+++.++|.+|.+.|. +|++|+|+
T Consensus         1 ~~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~   56 (487)
T PRK07638          1 MGITKEYKKHASLQPNKIAIKE------------NDR-----------VLTYKDWFESVCKVANWLNEKES-KNKTIAIL   56 (487)
T ss_pred             CChHHHHHHHHHhCCCCeEEec------------CCc-----------EeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEE
Confidence            3688999999999999999985            333           69999999999999999999984 79999999


Q ss_pred             cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCccccc
Q 005874          138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS  217 (672)
Q Consensus       138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~  217 (672)
                      ++|++++++++|||+++|++++|+++.++++++.++++.++++.++++......+...      ...++.++.       
T Consensus        57 ~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~------~~~~~~~~~-------  123 (487)
T PRK07638         57 LENRIEFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE------EGRVIEIDE-------  123 (487)
T ss_pred             cCCCHHHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc------cceEEEehh-------
Confidence            9999999999999999999999999999999999999999999999998655433211      011221111       


Q ss_pred             ccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEEE
Q 005874          218 SVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA  297 (672)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~  297 (672)
                                  +.+....... ...+.....+++++|+|||||||.||||+++|++++..+......+ +++++|+++.
T Consensus       124 ------------~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~~~  189 (487)
T PRK07638        124 ------------WKRMIEKYLP-TYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDF-HMKREDSVLI  189 (487)
T ss_pred             ------------hhhhhhhccc-cccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-CcCCCCEEEE
Confidence                        1111111111 1111122346789999999999999999999999999888777777 8899999999


Q ss_pred             ecChHhHHHHHHHHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCc
Q 005874          298 YLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGG  374 (672)
Q Consensus       298 ~~pl~h~~~~~~~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~  374 (672)
                      ..|++|..++...+.+++.|+++++   +++..+.+.           ++++++|+++++|+++..+.+..     .   
T Consensus       190 ~~~l~~~~~l~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~-----~---  250 (487)
T PRK07638        190 AGTLVHSLFLYGAISTLYVGQTVHLMRKFIPNQVLDK-----------LETENISVMYTVPTMLESLYKEN-----R---  250 (487)
T ss_pred             eecchHHHHHHHHHHHHccCcEEEEcCCCCHHHHHHH-----------HHHcCCeEEEeCcHHHHHHHhCc-----C---
Confidence            9999999888778889999999998   445555555           99999999999999998887630     0   


Q ss_pred             hhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCceecccC
Q 005874          375 LSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQGYG  453 (672)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG  453 (672)
                                                                 ...+.+.++++|++++++..+.+++.+ ++++++.||
T Consensus       251 -------------------------------------------~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG  287 (487)
T PRK07638        251 -------------------------------------------VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYG  287 (487)
T ss_pred             -------------------------------------------cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEec
Confidence                                                       001455677889999999999999988 789999999


Q ss_pred             cccccccccccCCC-CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCC
Q 005874          454 LTETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDK  532 (672)
Q Consensus       454 ~TE~~~~~~~~~~~-~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~  532 (672)
                      +||++.++...... ....+++|.|+++++++|+| +++..+   ++|+.|||+++|+.++.||+++++.+.+.+     
T Consensus       288 ~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~---~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-----  358 (487)
T PRK07638        288 ASELSFVTALVDEESERRPNSVGRPFHNVQVRICN-EAGEEV---QKGEIGTVYVKSPQFFMGYIIGGVLARELN-----  358 (487)
T ss_pred             CCccCceEEecccccCCCCCCCCcccCCcEEEEEC-CCCCCC---CCCCCeEEEEecccceeeecCCHHHHhhhc-----
Confidence            99998765544322 23457899999999999999 666654   578999999999999999999998877655     


Q ss_pred             CCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcChhHH
Q 005874          533 GMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQPAV  609 (672)
Q Consensus       533 ~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~~~~  609 (672)
                      .+|||+|||+|++|+||.++++||++|+||+ +|++|+|.+||+++.++|+|.+|+|++..++   ..++++|+... ..
T Consensus       359 ~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~-~~  436 (487)
T PRK07638        359 ADGWMTVRDVGYEDEEGFIYIVGREKNMILF-GGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGSA-TK  436 (487)
T ss_pred             cCCcEecCccEeEcCCCeEEEEecCCCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEECCC-CH
Confidence            7899999999999999999999999999997 6999999999999999999999999998765   45777776532 11


Q ss_pred             HHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHHHHhhh
Q 005874          610 EEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLY  671 (672)
Q Consensus       610 ~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~~ly  671 (672)
                      .+ ..    ..+++.|+.|++|+.++++++.|      +|++||++|++|++++++ .+..|
T Consensus       437 ~~-l~----~~~~~~l~~~~~p~~i~~v~~iP------~t~~GKv~r~~L~~~~~~-~~~~~  486 (487)
T PRK07638        437 QQ-LK----SFCLQRLSSFKIPKEWHFVDEIP------YTNSGKIARMEAKSWIEN-QEKIY  486 (487)
T ss_pred             HH-HH----HHHHHHhhcccCCcEEEEecccC------CCCcccccHHHHHHHHhc-ccccc
Confidence            11 11    45568999999999999999987      999999999999988766 44444

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=1.8e-63  Score=569.83  Aligned_cols=488  Identities=21%  Similarity=0.244  Sum_probs=377.3

Q ss_pred             CCCCHHHHHHHHHHHcCC-CCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874           56 GISTLAELFEQSCKEHGD-KYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV  134 (672)
Q Consensus        56 ~~~tl~~~~~~~a~~~pd-~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V  134 (672)
                      ...|+.++|.+.++++|+ ++|+..            .          +++.+||+|+.++++++|++|.+. +++||+|
T Consensus       202 ~~~t~~~~l~~~~~~~p~~~~a~~~------------~----------~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V  258 (718)
T PRK08043        202 PRETLYEALLSAQYRYGAGKPCIED------------V----------NFTPDSYRKLLKKTLFVGRILEKY-SVEGERI  258 (718)
T ss_pred             CCCCHHHHHHHHHHHhCCCCcceEc------------C----------CCCcccHHHHHHHHHHHHHHHHHh-cCCCceE
Confidence            457899999999999998 577753            1          123699999999999999999887 5999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHH--hhhcCCCCccEEEEecCCC
Q 005874          135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLV--DLSGQLDTVKHVICMDANI  212 (672)
Q Consensus       135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~--~~~~~~~~l~~ii~~~~~~  212 (672)
                      +++++|+++|++++|||+++|++++|+++.++++++.+++++++++++|++++..+...  .....++.++.+ .+++..
T Consensus       259 al~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~  337 (718)
T PRK08043        259 GLMLPNATISAAVIFGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWV-YLEDLK  337 (718)
T ss_pred             EEEcCCcHHHHHHHHHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEE-Ehhhhh
Confidence            99999999999999999999999999999999999999999999999999877544211  111112222222 222110


Q ss_pred             cccccccccCCCeEEEeHHHH-H--hcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCC
Q 005874          213 PSAVSSVEQSGRWKITSFADV-Q--ILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL  289 (672)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~  289 (672)
                       ..            ..+.+. .  ..............++|+++++|||||||.||||++||+|+++.+......+ ++
T Consensus       338 -~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~-~~  403 (718)
T PRK08043        338 -DD------------VTTADKLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-DF  403 (718)
T ss_pred             -hh------------cchhHHHHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh-CC
Confidence             00            001110 0  0000001111234678999999999999999999999999999888877777 88


Q ss_pred             CCCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeCC-c---ccccCchhhhhcccccccccccceeeecchHHHHHHHHH
Q 005874          290 GSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYGT-P---LTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDG  364 (672)
Q Consensus       290 ~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~~-~---~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~  364 (672)
                      +++|++++.+|++|.+++.. .+.++..|+++++.+ +   ..+.+.           ++++++|+++++|.++..+.+.
T Consensus       404 ~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~-----------i~~~~vt~~~~~p~~~~~l~~~  472 (718)
T PRK08043        404 TPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPEL-----------VYDRNCTVLFGTSTFLGNYARF  472 (718)
T ss_pred             CccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHH-----------HHhcCCeEEEchHHHHHHhhhh
Confidence            99999999999999999876 667899999999833 2   222222           8899999999999988765431


Q ss_pred             HHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh
Q 005874          365 VRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL  444 (672)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~  444 (672)
                      ..                                                 ....++||.+++||+++++++.+.+++.+
T Consensus       473 ~~-------------------------------------------------~~~~~~lr~i~~gg~~l~~~~~~~~~~~~  503 (718)
T PRK08043        473 AN-------------------------------------------------PYDFARLRYVVAGAEKLQESTKQLWQDKF  503 (718)
T ss_pred             cC-------------------------------------------------cccccceEEEEEeCccCCHHHHHHHHHHc
Confidence            00                                                 00114899999999999999999999999


Q ss_pred             CCceecccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccC--Cchh
Q 005874          445 GAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFK--NEEK  522 (672)
Q Consensus       445 ~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~--~~~~  522 (672)
                      |++++++||+||+++.++.........+++|.|+|+++++|+| +++       .++.|||+++|++++.|||+  +++.
T Consensus       504 g~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~~~i~d-~~~-------~~~~Gel~v~g~~v~~GY~~~e~~~~  575 (718)
T PRK08043        504 GLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLS-VPG-------IEQGGRLQLKGPNIMNGYLRVEKPGV  575 (718)
T ss_pred             CCCeecccCcccccceEEecCCcccCCCCCCCcCCCCeeEEec-CCC-------CCCceEEEEecCCccccccCCCCccc
Confidence            9999999999999877665444445668999999999999998 332       23569999999999999998  4443


Q ss_pred             h-------hhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC
Q 005874          523 T-------KEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH  595 (672)
Q Consensus       523 t-------~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~  595 (672)
                      +       .+.+.    .+|||+|||+|++|+||.+++.||+||+||+ +|++|+|.+||+++.+|+.+.+++|++.+++
T Consensus       576 ~~~~~~~~~~~~~----~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~-~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~  650 (718)
T PRK08043        576 LEVPTAENARGEM----ERGWYDTGDIVRFDEQGFVQIQGRAKRFAKI-AGEMVSLEMVEQLALGVSPDKQHATAIKSDA  650 (718)
T ss_pred             ccccccccccccc----cCCeEecCCEEEEcCCCcEEEEecCCCeeEe-CcEEcCHHHHHHHHHhCCccceEEEEEccCC
Confidence            2       22222    5799999999999999999999999999997 5999999999999999998888888887655


Q ss_pred             C---eEEEEEEcChhHHHHHHHHcChhhhhcC-CCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874          596 S---YCVALVVASQPAVEEWAAKQGIVGKNAR-LDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       596 ~---~~va~v~~~~~~~~~~~~~~~~~~~~~~-L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                      .   .+++++........+ ..    .+++++ |+.|++|+.+.++++.|      +|++||++|++|++++.+
T Consensus       651 ~~ge~~v~~~~~~~~~~~~-l~----~~~~~~~l~~~~vP~~i~~v~~lP------~t~~GKi~r~~L~~~~~~  713 (718)
T PRK08043        651 SKGEALVLFTTDSELTREK-LQ----QYAREHGVPELAVPRDIRYLKQLP------LLGSGKPDFVTLKSMVDE  713 (718)
T ss_pred             CCCceEEEEEcCcccCHHH-HH----HHHHhcCCCcccCCceEEEecccC------cCCCCCcCHHHHHHHHhc
Confidence            3   466665422211111 11    444454 99999999999999987      999999999999988764

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.3e-63  Score=553.04  Aligned_cols=513  Identities=24%  Similarity=0.325  Sum_probs=407.0

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF  137 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~  137 (672)
                      .|+.+++++.++++|+++|+.+            +++           .+||+||.++++++|.+|.+.|+++||+|+++
T Consensus        32 ~~l~~~~~~~~~~~p~~~a~~~------------~~~-----------~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~   88 (573)
T PRK05605         32 TTLVDLYDNAVARFGDRPALDF------------FGA-----------TTTYAELGKQVRRAAAGLRALGVRPGDRVAIV   88 (573)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEe------------CCC-----------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            4899999999999999999987            444           69999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCccc--
Q 005874          138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSA--  215 (672)
Q Consensus       138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~--  215 (672)
                      ++|+++|+++++||+++|++++|+++.++.+++.+++++++++.+|+++.....+.+..... ..+.++..+......  
T Consensus        89 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~  167 (573)
T PRK05605         89 LPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTT-PLETIVSVNMIAAMPLL  167 (573)
T ss_pred             CCCCHHHHHHHHHHHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhcc-ccceeEeeecccccccc
Confidence            99999999999999999999999999999999999999999999999887766555443322 233444433111000  


Q ss_pred             c--------cccc------cCCCeEEEeHHHHHhcccCC---CCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHH
Q 005874          216 V--------SSVE------QSGRWKITSFADVQILGREN---PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAT  278 (672)
Q Consensus       216 ~--------~~~~------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~  278 (672)
                      .        ....      ........+|+++.......   ........++++++++|||||||.||+|.+||+++++.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~  247 (573)
T PRK05605        168 QRLALRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFAN  247 (573)
T ss_pred             cccccccccccccccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHH
Confidence            0        0000      00112345677765442211   01223356789999999999999999999999999887


Q ss_pred             HHHHHhhcCCC-CCCcEEEEecChHhHHHHHH-HHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeec
Q 005874          279 VSAVMTIVPDL-GSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMAS  353 (672)
Q Consensus       279 ~~~~~~~~~~~-~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~  353 (672)
                      +......+..+ ..+|++++.+|++|.+++.. .+.++..|+++++   .++..+.+.           ++++++|++.+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------l~~~~~t~~~~  316 (573)
T PRK05605        248 AAQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDA-----------MKKHPPTWLPG  316 (573)
T ss_pred             HHHHHhhccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHH-----------HHHhCCEEEEc
Confidence            76554443223 34789999999999999876 5567999999988   344444444           89999999999


Q ss_pred             chHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCC
Q 005874          354 VPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLS  433 (672)
Q Consensus       354 ~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~  433 (672)
                      +|.+++.+.+.......                                               ..+++|.+++||++++
T Consensus       317 ~P~~~~~l~~~~~~~~~-----------------------------------------------~~~~lr~i~~gg~~l~  349 (573)
T PRK05605        317 VPPLYEKIAEAAEERGV-----------------------------------------------DLSGVRNAFSGAMALP  349 (573)
T ss_pred             hHHHHHHHHhCccccCC-----------------------------------------------CchhccEEEECCCcCC
Confidence            99999998764221110                                               1137999999999999


Q ss_pred             HHHHHHHHHHhCCceecccCcccccccccccCCC-CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcc
Q 005874          434 ADTQRFINICLGAPIGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNV  512 (672)
Q Consensus       434 ~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v  512 (672)
                      +++.+.+.+.+++++++.||+||++++++..... ....+++|.|.++++++|+|.++.+..  ++.|..|||+++|+.+
T Consensus       350 ~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~--~~~g~~Gel~v~~~~~  427 (573)
T PRK05605        350 VSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDET--MPDGEEGELLVRGPQV  427 (573)
T ss_pred             HHHHHHHHHHhCCCeecccccchhchhhhcCCcccCCcCCccccCCCCCEEEEEcCCCCCcc--CCCCCeeEEEEecCch
Confidence            9999999998899999999999998776654433 234578999999999999994331222  3578899999999999


Q ss_pred             cccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEec
Q 005874          513 TVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHAD  592 (672)
Q Consensus       513 ~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~  592 (672)
                      +.||+++++.+.+.|     .+|||+|||+|+++++|.++++||+||+++. +|++|+|.+||+++..++.|.+++|++.
T Consensus       428 ~~gy~~~~~~~~~~~-----~~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~-~G~~v~p~eIE~~l~~~~~i~~~~v~~~  501 (573)
T PRK05605        428 FKGYWNRPEETAKSF-----LDGWFRTGDVVVMEEDGFIRIVDRIKELIIT-GGFNVYPAEVEEVLREHPGVEDAAVVGL  501 (573)
T ss_pred             hhhhcCChhHhhhcc-----cCCCcccCCEEEEcCCCcEEEEeccccceee-CCEEECHHHHHHHHHhCcccceEEEEee
Confidence            999999999999888     4579999999999999999999999999996 7999999999999999999999999997


Q ss_pred             CCC---CeEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHHHH
Q 005874          593 PFH---SYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLA  668 (672)
Q Consensus       593 ~~~---~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~  668 (672)
                      ++.   +.++++|+++++...+...  ....+++.|+.+++|..+++++..|      +|.+||++|++|++++.+++.
T Consensus       502 ~~~~~~~~~~~~vv~~~~~~~~~~~--l~~~~~~~l~~~~~p~~i~~~~~iP------~t~~GKi~r~~L~~~~~~~~~  572 (573)
T PRK05605        502 PREDGSEEVVAAVVLEPGAALDPEG--LRAYCREHLTRYKVPRRFYHVDELP------RDQLGKVRRREVREELLEKLG  572 (573)
T ss_pred             ecccCCeEEEEEEEECCCCCCCHHH--HHHHHHHhCccccCCcEEEEeccCC------CCCcccccHHHHHHHHHHHhc
Confidence            544   5688888877642211111  1155678999999999999998887      999999999999999987653

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=3.7e-63  Score=551.88  Aligned_cols=515  Identities=20%  Similarity=0.248  Sum_probs=405.3

Q ss_pred             CCCCccCccCCCccccccccCCCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHH
Q 005874           34 GGEPGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAF  113 (672)
Q Consensus        34 ~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~  113 (672)
                      ..+||+......        .+...|+.+++.+.++.+|+++|+....          +|.           .+||+||.
T Consensus        12 ~~~~~~~~~~~~--------~~~~~~~~~~l~~~a~~~p~~~a~~~~~----------~~~-----------~~Ty~~l~   62 (546)
T PLN02330         12 EHIFRSRYPSVP--------VPDKLTLPDFVLQDAELYADKVAFVEAV----------TGK-----------AVTYGEVV   62 (546)
T ss_pred             ceeeccCCCCCC--------CCCCCcHHHHHhhhhhcCCCccEEEecC----------CCC-----------cccHHHHH
Confidence            456666543322        2455889999999999999999997521          233           69999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHH
Q 005874          114 ETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLV  193 (672)
Q Consensus       114 ~~a~~la~~L~~~g~~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~  193 (672)
                      +++.++|..|.+.|+++|++|+++++|+++++++++||+++|++++|+++..+.+++.+++++++++.+++++.....+.
T Consensus        63 ~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~  142 (546)
T PLN02330         63 RDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVK  142 (546)
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998777664


Q ss_pred             hhhcCCCCccEEEEecCCCcccccccccCCCeEEEeHHHHHhcccCCCC--CCCCCCCCCeEEEEeecCCCCCCceEEee
Q 005874          194 DLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPV--DADYPVSADVAVIMYTSGSTGLPKGVMMT  271 (672)
Q Consensus       194 ~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~a~i~~TSGTTG~PKgV~~t  271 (672)
                      ...     . .++.++....           .....|.++.........  ......++++++++|||||||.||||+++
T Consensus       143 ~~~-----~-~~i~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s  205 (546)
T PLN02330        143 GLG-----L-PVIVLGEEKI-----------EGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLT  205 (546)
T ss_pred             hcC-----C-cEEEecCCCC-----------CCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEe
Confidence            431     1 1333332110           112346665544322111  12334568999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhc-CCCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEee---CCcccccCchhhhhcccccccccc
Q 005874          272 HGNVLATVSAVMTIV-PDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVL  346 (672)
Q Consensus       272 h~~l~~~~~~~~~~~-~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~  346 (672)
                      |+++...+......+ +.....++.+..+|++|.+++.. .+.++..|+++++   +++..+++.           ++++
T Consensus       206 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~  274 (546)
T PLN02330        206 HRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNA-----------LITQ  274 (546)
T ss_pred             hHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHH-----------HHHc
Confidence            999987665432222 12234578999999999999876 5667899999888   445555555           9999


Q ss_pred             cceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEE
Q 005874          347 RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFIL  426 (672)
Q Consensus       347 k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~  426 (672)
                      ++|.+.++|.++..+...........                                             ...++|.++
T Consensus       275 ~vt~~~~~P~~~~~l~~~~~~~~~~~---------------------------------------------~~~~l~~i~  309 (546)
T PLN02330        275 EVSFAPIVPPIILNLVKNPIVEEFDL---------------------------------------------SKLKLQAIM  309 (546)
T ss_pred             CCeeeecCCHHHHHHHhCcccccccc---------------------------------------------chheeeeEE
Confidence            99999999999988865211000000                                             001589999


Q ss_pred             EcCCCCCHHHHHHHHHHh-CCceecccCcccccccccccC-CC----CCCCCccCCCcCCeEEEEEecCCCCcccCCCCC
Q 005874          427 SGGAPLSADTQRFINICL-GAPIGQGYGLTETCAGGTFSE-VD----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPM  500 (672)
Q Consensus       427 ~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~-~~----~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g  500 (672)
                      +||+++++++.++++..+ ++++++.||+||++.+..... ..    ....+++|.|+++++++|+|.+++..+   +.|
T Consensus       310 ~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~---p~g  386 (546)
T PLN02330        310 TAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSL---PKN  386 (546)
T ss_pred             EcCCcCCHHHHHHHHHHcCCCeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccC---CCC
Confidence            999999999999999988 899999999999875543221 11    122368999999999999995455544   578


Q ss_pred             CccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhc
Q 005874          501 PRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIV  580 (672)
Q Consensus       501 ~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~  580 (672)
                      +.|||+++|++++.||+++++.+++.++    .+|||+|||+|++++||.++++||.+|+|++ +|++|+|.+||+++.+
T Consensus       387 ~~Gel~v~g~~~~~gy~~~~~~~~~~~~----~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~  461 (546)
T PLN02330        387 TPGELCVRSQCVMQGYYNNKEETDRTID----EDGWLHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLT  461 (546)
T ss_pred             CceEEEEecchhhhhhccCccchhhhcc----CCCceecccEEEEeCCCcEEEEechHHhhhc-CCEEECHHHHHHHHHh
Confidence            8999999999999999999999998887    7899999999999999999999999999997 5999999999999999


Q ss_pred             CcccceEEEEecCCC---CeEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChH
Q 005874          581 SPYVDNIMMHADPFH---SYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKRE  657 (672)
Q Consensus       581 ~~~V~~~~V~g~~~~---~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~  657 (672)
                      +|.|.+++|++.+++   ..++++|++.+....+...  ....+++.|+.++.|+.++++++.|      +|++||++|+
T Consensus       462 ~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~--l~~~~~~~l~~~~~p~~~~~v~~iP------~t~~GK~~r~  533 (546)
T PLN02330        462 HPSVEDAAVVPLPDEEAGEIPAACVVINPKAKESEED--ILNFVAANVAHYKKVRVVQFVDSIP------KSLSGKIMRR  533 (546)
T ss_pred             CCchheEEEEeccccccCceeEEEEEECCCCCCCHHH--HHHHHHHhcccccCceEEEEeccCC------CCCCcceeHH
Confidence            999999999997654   4588888876542111111  1155678999999999999999887      9999999999


Q ss_pred             HHHHHHHHH
Q 005874          658 AIRKAFADD  666 (672)
Q Consensus       658 ~l~~~~~~~  666 (672)
                      +|++++...
T Consensus       534 ~L~~~~~~~  542 (546)
T PLN02330        534 LLKEKMLSI  542 (546)
T ss_pred             HHHHHHHhh
Confidence            999998654

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=8.2e-63  Score=546.93  Aligned_cols=491  Identities=21%  Similarity=0.292  Sum_probs=395.4

Q ss_pred             CCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 005874           56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA  135 (672)
Q Consensus        56 ~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~  135 (672)
                      ...++.++|++.++.+|+++|+.+            +++           .+||+|+.++++++|..|.+.|+++|++|+
T Consensus        21 ~~~~l~~~~~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~   77 (527)
T TIGR02275        21 QDKPLTDILRDQAARYPDAIAIIC------------GNR-----------QWSYRELDQRADNLAAGLTKLGIGQGDTAV   77 (527)
T ss_pred             cCCcHHHHHHHHHHHCCCceEEEe------------CCc-----------eecHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            356899999999999999999975            443           799999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccch-----HHHHhhhcCCCCccEEEEecC
Q 005874          136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL-----KKLVDLSGQLDTVKHVICMDA  210 (672)
Q Consensus       136 i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~~~~~l~~ii~~~~  210 (672)
                      ++++|+.+++++++||+++|++++++++..+.+++.+++++++++.++++....     ..........+.++.++....
T Consensus        78 i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (527)
T TIGR02275        78 VQLPNIAEFYIVFFALLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQ  157 (527)
T ss_pred             EECCCcHHHHHHHHHHHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecC
Confidence            999999999999999999999999999999999999999999999999987542     112222233445555554332


Q ss_pred             CCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCC
Q 005874          211 NIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG  290 (672)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~  290 (672)
                      .....             .......... ...+.....++++++++|||||||.||||++||+++...+......+ .++
T Consensus       158 ~~~~~-------------~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~  222 (527)
T TIGR02275       158 TRVEA-------------ELFLWLESPA-EPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-WLT  222 (527)
T ss_pred             CCCcc-------------hhhHHhhCcC-ccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-CCC
Confidence            11000             0111111111 11122345678999999999999999999999999999888877777 889


Q ss_pred             CCcEEEEecChHhHHHHHH--HHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHH
Q 005874          291 SKDVYLAYLPLAHVLELVA--ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGV  365 (672)
Q Consensus       291 ~~d~~l~~~pl~h~~~~~~--~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~  365 (672)
                      .+|++++.+|++|.+++..  .+.++..|+++++   .++..+.+.           ++++++|++.++|.++..+.+..
T Consensus       223 ~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~~~~l~~~~  291 (527)
T TIGR02275       223 QQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPL-----------IERHKVTVTALVPPAVALWMQAA  291 (527)
T ss_pred             cCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEECCCCCHHHHHHH-----------HHHhCCeEEEecHHHHHHHHhCc
Confidence            9999999999999999764  5778999999988   333333333           89999999999999998877643


Q ss_pred             HHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhC
Q 005874          366 RKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLG  445 (672)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~  445 (672)
                      .....                                               ..+++|.+++||+++++++.+.+.+.++
T Consensus       292 ~~~~~-----------------------------------------------~~~~lr~~~~gG~~l~~~~~~~~~~~~g  324 (527)
T TIGR02275       292 SKSRY-----------------------------------------------DLSSLKLLQVGGAKFSEAAARRVPAVFG  324 (527)
T ss_pred             cccCC-----------------------------------------------CccceEEEEEcCCCCCHHHHHHHHHHhC
Confidence            21110                                               1137999999999999999999999999


Q ss_pred             CceecccCcccccccccccC-CCCCCCCccCCCc-CCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhh
Q 005874          446 APIGQGYGLTETCAGGTFSE-VDDSSVGRVGAPL-PCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT  523 (672)
Q Consensus       446 ~~v~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~-~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t  523 (672)
                      +++++.||+||++...+... ..+...+++|.|+ ++.+++|+| ++++..   ++|+.|||+++|+.++.||+++++.+
T Consensus       325 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d-~~g~~~---~~g~~Gei~v~g~~~~~gY~~~~~~~  400 (527)
T TIGR02275       325 CQLQQVFGMAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVD-DHGNPV---APGETGMLLTRGPYTFRGYYKAPEHN  400 (527)
T ss_pred             CeEEeeeccCccCccccCCCCccccccccCCCCCCCCceEEEEC-CCCCCC---CCCCceEEEecCCccchhhcCChhHh
Confidence            99999999999654332211 1223346899999 589999999 666554   47899999999999999999999999


Q ss_pred             hhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEE
Q 005874          524 KEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVA  600 (672)
Q Consensus       524 ~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va  600 (672)
                      .+.|+    .+|||+|||+|++++||.+++.||.+|+|+. +|++|+|.+||++|.+||+|.+++|++.++.   +.+++
T Consensus       401 ~~~~~----~dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a  475 (527)
T TIGR02275       401 AAAFD----AEGFYYTGDLVRLTPEGYIVVVGRAKDQINR-GGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCA  475 (527)
T ss_pred             HhhcC----cCCCEEcCceEEEcCCccEEEEecccceeec-CCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEE
Confidence            99987    7899999999999999999999999999996 6999999999999999999999999998766   45889


Q ss_pred             EEEcChhHHHHHHHHcChhhhhc-CCCCCcceeEEEEeecCCCCCCCccccccccChHHHH
Q 005874          601 LVVASQPAVEEWAAKQGIVGKNA-RLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIR  660 (672)
Q Consensus       601 ~v~~~~~~~~~~~~~~~~~~~~~-~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~  660 (672)
                      +|++++..... ..  ..+++++ +|+.|++|..+.++++.|      +|++||++|++|+
T Consensus       476 ~vv~~~~~~~~-~~--l~~~l~~~~l~~~~~P~~i~~v~~iP------~t~sGKv~r~~L~  527 (527)
T TIGR02275       476 FIVVRDPALKA-AQ--LRRFLRERGLAEYKLPDRVEFIDSLP------LTAVGKIDKKALR  527 (527)
T ss_pred             EEEECCCCCCH-HH--HHHHHHhCCCccccCCCEEEEeccCC------CCCccceeHHhcC
Confidence            98877653211 11  1144444 599999999999999887      9999999999874

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=5.7e-63  Score=547.48  Aligned_cols=501  Identities=21%  Similarity=0.256  Sum_probs=401.1

Q ss_pred             CCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 005874           56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA  135 (672)
Q Consensus        56 ~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~  135 (672)
                      +..|+.++|++.++++||++|+.+.           ++       .++++.+||.||.++++++|..|.++|+++|++|+
T Consensus         5 ~~~~l~~~~~~~a~~~p~~~a~~~~-----------~~-------~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~   66 (517)
T PRK08008          5 GGQHLRQMWDDLADVYGHKTALIFE-----------SS-------GGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVA   66 (517)
T ss_pred             ccccHHHHHHHHHHHCCCceEEEcc-----------cC-------CCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            4478999999999999999999874           21       13456899999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcC-CCCccEEEEecCCCcc
Q 005874          136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQ-LDTVKHVICMDANIPS  214 (672)
Q Consensus       136 i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~-~~~l~~ii~~~~~~~~  214 (672)
                      ++++|+.+++++++||+++|++++|+++..+.+++.+++++++++.+|++.+..+.+.++... ...++.++..+.....
T Consensus        67 i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (517)
T PRK08008         67 LHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPA  146 (517)
T ss_pred             EEcCCCHHHHHHHHHHHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcc
Confidence            999999999999999999999999999999999999999999999999999887777666443 2345566665543211


Q ss_pred             cccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcE
Q 005874          215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV  294 (672)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~  294 (672)
                      .         ....+++++...............++++++++|||||||.||||++||+|++.......... .+..+|+
T Consensus       147 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~~~  216 (517)
T PRK08008        147 D---------DGVSSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQC-ALRDDDV  216 (517)
T ss_pred             c---------ccccCHHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhc-CCCCCCe
Confidence            1         11234554443322211122334568999999999999999999999999986544333333 6788999


Q ss_pred             EEEecChHhHHHHHH-HHHHhHhCcEEeeC---CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhh
Q 005874          295 YLAYLPLAHVLELVA-ENLIAGVGSAIGYG---TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD  370 (672)
Q Consensus       295 ~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~---~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~  370 (672)
                      +++.+|++|..+... .+.++..|+++++.   ++..+++.           ++++++|++.++|.+++.+.........
T Consensus       217 ~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~  285 (517)
T PRK08008        217 YLTVMPAFHIDCQCTAAMAAFSAGATFVLLEKYSARAFWGQ-----------VCKYRATITECIPMMIRTLMVQPPSAND  285 (517)
T ss_pred             EEEecCcHHHHHHHHHHHHHHhcCcEEEEccccCHHHHHHH-----------HHHcCCcEEechHHHHHHHHhCCCcccc
Confidence            999999999877655 66789999999983   34444444           8999999999999999887642110000


Q ss_pred             hcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceec
Q 005874          371 AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQ  450 (672)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~  450 (672)
                                                                     ....++.+.++ .+++++....+.+.+++++++
T Consensus       286 -----------------------------------------------~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~  317 (517)
T PRK08008        286 -----------------------------------------------RQHCLREVMFY-LNLSDQEKDAFEERFGVRLLT  317 (517)
T ss_pred             -----------------------------------------------ccccceeeEEe-cCCCHHHHHHHHHHhCCeEEe
Confidence                                                           01257777665 478999988898888999999


Q ss_pred             ccCcccccccccccCC-CCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEcc---CcccccccCCchhhhhh
Q 005874          451 GYGLTETCAGGTFSEV-DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAG---PNVTVGYFKNEEKTKEV  526 (672)
Q Consensus       451 ~YG~TE~~~~~~~~~~-~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g---~~v~~gY~~~~~~t~~~  526 (672)
                      .||+||++..++.... .....+++|.|.++++++|+| +++..+   +.|..|||+++|   ++++.||+++++.+++.
T Consensus       318 ~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~~~~~~---~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~  393 (517)
T PRK08008        318 SYGMTETIVGIIGDRPGDKRRWPSIGRPGFCYEAEIRD-DHNRPL---PAGEIGEICIKGVPGKTIFKEYYLDPKATAKV  393 (517)
T ss_pred             eccccccccccccCCccccccCCccccCCCCcEEEEEC-CCCCCC---CCCCcceEEEeCCCCcchhhhHhCChHHHhhc
Confidence            9999999865543322 233457899999999999999 666655   478899999998   68999999999999999


Q ss_pred             cccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEE
Q 005874          527 YKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVV  603 (672)
Q Consensus       527 ~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~  603 (672)
                      |.    .+|||+|||+|++++||.++++||.+|+||. +|++|+|.+||+++.+++.|.+++|+|..++   ..++++|+
T Consensus       394 ~~----~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~-~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~  468 (517)
T PRK08008        394 LE----ADGWLHTGDTGYVDEEGFFYFVDRRCNMIKR-GGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVV  468 (517)
T ss_pred             cc----CCCCeeccceEEECCCCcEEEeecccceEEe-CCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEE
Confidence            97    7899999999999999999999999999997 5999999999999999999999999998755   35889999


Q ss_pred             cChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHH
Q 005874          604 ASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIR  660 (672)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~  660 (672)
                      ++++...+...  ...+++++|+.+++|..+++++..|      +|++||++|+.|+
T Consensus       469 ~~~~~~~~~~~--l~~~~~~~l~~~~~P~~~~~v~~iP------~t~~gK~~r~~l~  517 (517)
T PRK08008        469 LNEGETLSEEE--FFAFCEQNMAKFKVPSYLEIRKDLP------RNCSGKIIKKNLK  517 (517)
T ss_pred             ECCCCCCCHHH--HHHHHHhhcccccCCcEEEEeccCC------CCCccceehhhcC
Confidence            88653221111  1266678999999999999999887      9999999999874

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=1.4e-62  Score=544.49  Aligned_cols=499  Identities=25%  Similarity=0.314  Sum_probs=408.7

Q ss_pred             CHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEc
Q 005874           59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFA  138 (672)
Q Consensus        59 tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~  138 (672)
                      +++++|+..++++|+++|+..            +++           .+||+|+.+++.++|..|.+.|+.+|++|++++
T Consensus         1 ~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~   57 (515)
T TIGR03098         1 LLHHLLEDAAARLPDATALVH------------HDR-----------TLTYAALSERVLALASGLRGLGLARGERVAIYL   57 (515)
T ss_pred             CHHHHHHHHHHHCCCCeEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence            478999999999999999986            333           699999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccccc
Q 005874          139 DTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSS  218 (672)
Q Consensus       139 ~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~  218 (672)
                      +|+.+++++++||+.+|++++|+++..+.+++..++++++++++|++....+.+.......+.+..++.+++......  
T Consensus        58 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  135 (515)
T TIGR03098        58 DKRLETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHASE--  135 (515)
T ss_pred             CCCHHHHHHHHHHHhcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCcccccC--
Confidence            999999999999999999999999999999999999999999999998877766666555566666776654322110  


Q ss_pred             cccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEEEe
Q 005874          219 VEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAY  298 (672)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~  298 (672)
                          .......|+++.......  .......+++++++|||||||.||+|++||++++..+......+ .+..+|++++.
T Consensus       136 ----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~d~~l~~  208 (515)
T TIGR03098       136 ----GGGESPSWPKLLALGDAD--PPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL-ENRPDDRLLAV  208 (515)
T ss_pred             ----CccccccHHHhhcccccc--ccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHh-CCCcccEEEEE
Confidence                122344566665433221  22334568899999999999999999999999999888877777 88999999999


Q ss_pred             cChHhHHHHHHHHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCch
Q 005874          299 LPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGL  375 (672)
Q Consensus       299 ~pl~h~~~~~~~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~  375 (672)
                      +|++|.+++...+.++..|+++++   .++..+.+.           ++++++|++.++|+++..|.+.....       
T Consensus       209 ~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~-------  270 (515)
T TIGR03098       209 LPLSFDYGFNQLTTAFYVGATVVLHDYLLPRDVLKA-----------LEKHGITGLAAVPPLWAQLAQLDWPE-------  270 (515)
T ss_pred             CchhhHhHHHHHHHHHHcCCEEEEcCCCCHHHHHHH-----------HHHcCCceEecChHHHHHHHhcccCC-------
Confidence            999999999888899999999998   334444444           89999999999999998876521000       


Q ss_pred             hHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCceecccCc
Q 005874          376 SKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQGYGL  454 (672)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~  454 (672)
                                                               ....++|.+++||+++++++.+.+++.+ ++.+++.||+
T Consensus       271 -----------------------------------------~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~  309 (515)
T TIGR03098       271 -----------------------------------------SAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGL  309 (515)
T ss_pred             -----------------------------------------CCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeecc
Confidence                                                     0123899999999999999999999988 7889999999


Q ss_pred             ccccccccccCC-CCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCC-
Q 005874          455 TETCAGGTFSEV-DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDK-  532 (672)
Q Consensus       455 TE~~~~~~~~~~-~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~-  532 (672)
                      ||++........ .....+++|.|+++++++|+| +++..+   +.|+.|||+++|+.++.||+++++.+.+.|..... 
T Consensus       310 tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~~-~~~~~~---~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~  385 (515)
T TIGR03098       310 TEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLVLR-EDGSEC---APGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPR  385 (515)
T ss_pred             ccccceEecccccccCCCCCcceecCCCEEEEEC-CCCCCC---CCCCceEEEEcCchhhccccCCchhhhhhhhccCCc
Confidence            998754433222 133457999999999999999 666554   46889999999999999999999999887753221 


Q ss_pred             ------CCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEE
Q 005874          533 ------GMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVV  603 (672)
Q Consensus       533 ------~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~  603 (672)
                            +++|++|||+|++++||.+++.||.+|+|+. +|++|+|++||+++.++|.|.+++|++.+++   +.++++++
T Consensus       386 ~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~  464 (515)
T TIGR03098       386 PGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKT-SGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVT  464 (515)
T ss_pred             cccccccccceeccceEEEcCCceEEEEeccccceec-CCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEE
Confidence                  2459999999999999999999999999997 6999999999999999999999999997654   45888887


Q ss_pred             cChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHH
Q 005874          604 ASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRK  661 (672)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~  661 (672)
                      +.+....+....  ...+.++|+.+++|..++++++.|      +|++||++|++|++
T Consensus       465 ~~~~~~~~~~~l--~~~l~~~l~~~~~p~~i~~v~~iP------~t~~GK~~r~~L~~  514 (515)
T TIGR03098       465 PPGGEELDRAAL--LAECRARLPNYMVPALIHVRQALP------RNANGKIDRKALAA  514 (515)
T ss_pred             eCCCCCCCHHHH--HHHHHhhCccccCCCEEEEeccCC------CCCCCCCcHHHhcc
Confidence            544322111111  155678999999999999999987      99999999999975

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=2.2e-62  Score=541.29  Aligned_cols=493  Identities=26%  Similarity=0.380  Sum_probs=401.0

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF  137 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~  137 (672)
                      .++.+++..++ .+|+++|+...           +++           .+||.||.+++.++|++|.+.|+++|++|+++
T Consensus         3 ~~l~~~~~~~~-~~~~~~a~~~~-----------~~~-----------~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~   59 (504)
T PRK07514          3 NNLFDALRAAF-ADRDAPFIETP-----------DGL-----------RYTYGDLDAASARLANLLVALGVKPGDRVAVQ   59 (504)
T ss_pred             ccHHHHHHHHh-hCCCCeEEEeC-----------CCC-----------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            57999999999 99999999752           343           79999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCccccc
Q 005874          138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS  217 (672)
Q Consensus       138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~  217 (672)
                      ++|+++++++++||+++|++++|+++..+.+++..+++.++++++++++.....+.+..... ....++.++.....   
T Consensus        60 ~~~~~e~~v~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---  135 (504)
T PRK07514         60 VEKSPEALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAA-GAPHVETLDADGTG---  135 (504)
T ss_pred             CCCCHHHHHHHHHHHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhcc-CCceEEEecCCCcc---
Confidence            99999999999999999999999999999999999999999999999988777665554332 22334443332111   


Q ss_pred             ccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEEE
Q 005874          218 SVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA  297 (672)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~  297 (672)
                                 .+.+...... .........++++++|+|||||||.||+|.+||+++...+......+ .++++|++++
T Consensus       136 -----------~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~l~  202 (504)
T PRK07514        136 -----------SLLEAAAAAP-DDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW-RFTPDDVLIH  202 (504)
T ss_pred             -----------cHHHhhhhcC-cccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHh-CCCCccEEEE
Confidence                       1111111111 11122345678999999999999999999999999999888777777 8899999999


Q ss_pred             ecChHhHHHHHH-HHHHhHhCcEEeeC---CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcC
Q 005874          298 YLPLAHVLELVA-ENLIAGVGSAIGYG---TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKG  373 (672)
Q Consensus       298 ~~pl~h~~~~~~-~~~~l~~G~~i~~~---~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~  373 (672)
                      .+|++|..++.. .+.++..|+++++.   ++..+.+.           +  .++|.+.++|.++..++.....      
T Consensus       203 ~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i--~~~t~~~~~P~~~~~l~~~~~~------  263 (504)
T PRK07514        203 ALPIFHTHGLFVATNVALLAGASMIFLPKFDPDAVLAL-----------M--PRATVMMGVPTFYTRLLQEPRL------  263 (504)
T ss_pred             ecchHHHHHHHHHHHHHHhcCcEEEECCCCCHHHHHHH-----------H--HhheeeecHHHHHHHHHcCCCC------
Confidence            999999999876 66789999999984   33333332           4  4799999999999887652100      


Q ss_pred             chhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccC
Q 005874          374 GLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYG  453 (672)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG  453 (672)
                                                               .....+++|.+++||+++++++.+.+++.+++++++.||
T Consensus       264 -----------------------------------------~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG  302 (504)
T PRK07514        264 -----------------------------------------TREAAAHMRLFISGSAPLLAETHREFQERTGHAILERYG  302 (504)
T ss_pred             -----------------------------------------CcccccceeeEEecCCCCCHHHHHHHHHHhCCcceeecc
Confidence                                                     001124899999999999999999999999999999999


Q ss_pred             cccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCC
Q 005874          454 LTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKG  533 (672)
Q Consensus       454 ~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~  533 (672)
                      +||++...+.........+++|.|+++++++|+|++++..+   +.|+.|||+++|++++.||+++++.+++.|.    .
T Consensus       303 ~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~---~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~----~  375 (504)
T PRK07514        303 MTETNMNTSNPYDGERRAGTVGFPLPGVSLRVTDPETGAEL---PPGEIGMIEVKGPNVFKGYWRMPEKTAEEFR----A  375 (504)
T ss_pred             cccccccccCCccccccCcccccCCCCcEEEEEECCCCCCC---CCCCceEEEEecCCccccccCCchhhhhhcc----c
Confidence            99998655433333344578999999999999995455443   5788999999999999999999999999997    6


Q ss_pred             CceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcChhHHH
Q 005874          534 MRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQPAVE  610 (672)
Q Consensus       534 ~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~~~~~  610 (672)
                      +|||+|||+|+++++|.++++||+||+||. +|++|+|.+||+++.++++|.+++|++.+++   ..+++++++.+....
T Consensus       376 ~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  454 (504)
T PRK07514        376 DGFFITGDLGKIDERGYVHIVGRGKDLIIS-GGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAAL  454 (504)
T ss_pred             CCCeeecceEEEcCCccEEEeccccceEEe-CCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCCC
Confidence            899999999999999999999999999997 6999999999999999999999999997654   358899988754321


Q ss_pred             HHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874          611 EWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD  666 (672)
Q Consensus       611 ~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~  666 (672)
                      +....  ...++++|+.+++|+.++++++.|      +|++||++|++|+++|++.
T Consensus       455 ~~~~l--~~~~~~~l~~~~~p~~i~~v~~~p------~t~~gK~~r~~l~~~~~~~  502 (504)
T PRK07514        455 DEAAI--LAALKGRLARFKQPKRVFFVDELP------RNTMGKVQKNLLREQYADL  502 (504)
T ss_pred             CHHHH--HHHHHhhcccCCCCcEEEEeccCC------CCCCcceeHHHHHHHHHhh
Confidence            11111  155668899999999999999887      9999999999999988765

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.9e-62  Score=548.64  Aligned_cols=503  Identities=25%  Similarity=0.336  Sum_probs=402.8

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF  137 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~  137 (672)
                      .|+.++|++.++++|+++|+.+.+          ++           +.+||.||.++++++|.+|.+.|+++|++|+++
T Consensus        18 ~~l~~~l~~~~~~~p~~~a~~~~~----------~~-----------~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~   76 (558)
T PRK12583         18 QTIGDAFDATVARFPDREALVVRH----------QA-----------LRYTWRQLADAVDRLARGLLALGVQPGDRVGIW   76 (558)
T ss_pred             CcHHHHHHHHHHHCCCCeEEEecC----------CC-----------cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            589999999999999999998742          22           379999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccch-----HHHHhhhc-------------CC
Q 005874          138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL-----KKLVDLSG-------------QL  199 (672)
Q Consensus       138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~-------------~~  199 (672)
                      ++|+++|++++|||+++|++++|+++..+.+++.+++++++++.+|+++...     ..+.+...             ..
T Consensus        77 ~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (558)
T PRK12583         77 APNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERL  156 (558)
T ss_pred             CCCChHHHHHHHHHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccC
Confidence            9999999999999999999999999999999999999999999999976432     22222111             12


Q ss_pred             CCccEEEEecCCCcccccccccCCCeEEEeHHHHHhcccCC-----CCCCCCCCCCCeEEEEeecCCCCCCceEEeehHH
Q 005874          200 DTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGREN-----PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGN  274 (672)
Q Consensus       200 ~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~  274 (672)
                      +.++.++.++....           .....|+++...+...     ........++++++++|||||||.||||.+||++
T Consensus       157 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~  225 (558)
T PRK12583        157 PELRGVVSLAPAPP-----------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHN  225 (558)
T ss_pred             CcceEEEEecCCCC-----------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHH
Confidence            33344444332211           1122344443322111     0111234578899999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEee----CCcccccCchhhhhcccccccccccce
Q 005874          275 VLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY----GTPLTLTDTSSKIKKGTQGDASVLRPT  349 (672)
Q Consensus       275 l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~----~~~~~l~~~~~~~~~~~~~~i~~~k~t  349 (672)
                      +.+.+......+ +++.+|++++.+|++|.++... .+.++..|+++++    .++..+...           ++++++|
T Consensus       226 l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~-----------i~~~~~t  293 (558)
T PRK12583        226 ILNNGYFVAESL-GLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQA-----------VEEERCT  293 (558)
T ss_pred             HHHHHHHHHHHh-CCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHH-----------HHHcCCe
Confidence            999888877777 8899999999999999999876 6677999999986    333333444           8999999


Q ss_pred             eeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcC
Q 005874          350 VMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGG  429 (672)
Q Consensus       350 ~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG  429 (672)
                      +++++|+++..+.......                                               ....+++|.+++||
T Consensus       294 ~l~~~P~~~~~l~~~~~~~-----------------------------------------------~~~~~~lr~i~~~G  326 (558)
T PRK12583        294 ALYGVPTMFIAELDHPQRG-----------------------------------------------NFDLSSLRTGIMAG  326 (558)
T ss_pred             EEeccHHHHHHHHcccccc-----------------------------------------------CCCchhheEEEecC
Confidence            9999999987765421100                                               00113899999999


Q ss_pred             CCCCHHHHHHHHHHhC-CceecccCcccccccccccCCC---CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEE
Q 005874          430 APLSADTQRFINICLG-APIGQGYGLTETCAGGTFSEVD---DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEI  505 (672)
Q Consensus       430 ~~l~~~~~~~~~~~~~-~~v~~~YG~TE~~~~~~~~~~~---~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi  505 (672)
                      +++++++.+.+...++ +.+++.||+||++.+++.....   ..+..++|.|.+++.++|+| +++..+   +.|+.|||
T Consensus       327 ~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~~~~~---~~g~~Gel  402 (558)
T PRK12583        327 APCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PDGATV---PRGEIGEL  402 (558)
T ss_pred             CCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEEC-CCCCCC---CCCCeeEE
Confidence            9999999999988875 5799999999998776554322   22457899999999999999 555544   57889999


Q ss_pred             EEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccc
Q 005874          506 VIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVD  585 (672)
Q Consensus       506 ~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~  585 (672)
                      +++|+.++.||+++++.+...|.    .+|||+|||+|++++||.+++.||++|+|+. +|++|+|.+||+++.++|+|.
T Consensus       403 ~v~g~~~~~gy~~~~~~~~~~~~----~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~  477 (558)
T PRK12583        403 CTRGYSVMKGYWNNPEATAESID----EDGWMHTGDLATMDEQGYVRIVGRSKDMIIR-GGENIYPREIEEFLFTHPAVA  477 (558)
T ss_pred             EEEeCccchhhcCChHHHHhhcC----CCCCeeccceEEECCCccEEEEecccceeEE-CCEEeCHHHHHHHHHhCCCee
Confidence            99999999999999999988886    7899999999999999999999999999996 699999999999999999999


Q ss_pred             eEEEEecCCC---CeEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHH
Q 005874          586 NIMMHADPFH---SYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKA  662 (672)
Q Consensus       586 ~~~V~g~~~~---~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~  662 (672)
                      +++|++..++   ..++++++++++...+...  ....++++|+.+++|..++++++.|      +|++||++|++|+++
T Consensus       478 ~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~--i~~~~~~~L~~~~~P~~i~~v~~lP------~t~sGK~~r~~L~~~  549 (558)
T PRK12583        478 DVQVFGVPDEKYGEEIVAWVRLHPGHAASEEE--LREFCKARIAHFKVPRYFRFVDEFP------MTVTGKVQKFRMREI  549 (558)
T ss_pred             EEEEEeeecCCCCcEEEEEEEECCCCCCCHHH--HHHHHHhhcccCcCCcEEEEeccCC------CCCCCCccHHHHHHH
Confidence            9999997654   4588888876542111111  1145568999999999999999887      999999999999999


Q ss_pred             HHHHHH
Q 005874          663 FADDLA  668 (672)
Q Consensus       663 ~~~~i~  668 (672)
                      +.++++
T Consensus       550 ~~~~~~  555 (558)
T PRK12583        550 SIEELA  555 (558)
T ss_pred             HHhhcC
Confidence            877653

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1e-62  Score=554.69  Aligned_cols=510  Identities=22%  Similarity=0.254  Sum_probs=379.8

Q ss_pred             CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874           55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV  134 (672)
Q Consensus        55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V  134 (672)
                      +...|+.++++++++++|+++|+.+.+..        ++.      .|.++.+||+||.++++++|.+|.+. +++||+|
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--------~~~------~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V   95 (612)
T PRK12476         31 PPGTTLISLIERNIANVGDTVAYRYLDHS--------HSA------AGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRV   95 (612)
T ss_pred             CccCcHHHHHHHHHHhCCCceEEEEEccC--------CCC------CCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEE
Confidence            45578999999999999999999864210        111      13445799999999999999999986 9999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCcEEEec-CCCCC--HHHHHHHHhcccceEEEECccchHHHHhhhcCCCC--ccEEEEec
Q 005874          135 AIFADTRAEWFVALQGCFRRNVTVVTI-YASLG--EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDT--VKHVICMD  209 (672)
Q Consensus       135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~--l~~ii~~~  209 (672)
                      +++++|+++|++++|||+++|++++|+ ++.++  .+++.+++++++++++|++++..+.+.+....++.  ...++.++
T Consensus        96 ~l~~~n~~e~~~~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~  175 (612)
T PRK12476         96 AILAPQGIDYVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAID  175 (612)
T ss_pred             EEECCCChhHHHHHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEec
Confidence            999999999999999999999999999 56666  78999999999999999998777665554333322  12334332


Q ss_pred             CCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCC-
Q 005874          210 ANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPD-  288 (672)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~-  288 (672)
                      ....                      .. ..........++++++|+|||||||.||||++||+++++.+......+ . 
T Consensus       176 ~~~~----------------------~~-~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~  231 (612)
T PRK12476        176 AIPD----------------------SA-GESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSI-DL  231 (612)
T ss_pred             cccc----------------------cc-cccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHh-cc
Confidence            2100                      00 001112234568999999999999999999999999998877766666 5 


Q ss_pred             CCCCcEEEEecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhccccccc--ccccceeeecchHHHHHHHHHHH
Q 005874          289 LGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDA--SVLRPTVMASVPAILDRVRDGVR  366 (672)
Q Consensus       289 ~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i--~~~k~t~~~~~P~~l~~l~~~~~  366 (672)
                      +.++|++++++|++|.+++...+.++..|+++++..+..+..+    +..++..+  .++++|+++.+|.++..+.....
T Consensus       232 ~~~~~~~l~~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~----p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~  307 (612)
T PRK12476        232 LDRNTHGVSWLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRR----PQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRG  307 (612)
T ss_pred             CCCCceEEEeCCcccccchHHHHHHHhcCCeEEEECHHHHHHH----HHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhc
Confidence            7889999999999999998876666556666655332211111    11111126  35889999999998887765210


Q ss_pred             HhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh--
Q 005874          367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL--  444 (672)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~--  444 (672)
                      ....                                           ......+++| +++||+++++++.+.+++.+  
T Consensus       308 ~~~~-------------------------------------------~~~~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~  343 (612)
T PRK12476        308 LPAE-------------------------------------------GDDIDLSNVV-LIIGSEPVSIDAVTTFNKAFAP  343 (612)
T ss_pred             Chhh-------------------------------------------hcCcchhHhe-EEecccCCCHHHHHHHHHHHHh
Confidence            0000                                           0000113789 99999999999999999877  


Q ss_pred             -CC---ceecccCcccccccccccCCCC---------------------------CCCCccCCCcCCeEEEEEecCC-CC
Q 005874          445 -GA---PIGQGYGLTETCAGGTFSEVDD---------------------------SSVGRVGAPLPCSFIKLIDWPE-GG  492 (672)
Q Consensus       445 -~~---~v~~~YG~TE~~~~~~~~~~~~---------------------------~~~~~~G~p~~~~~v~i~d~~~-~~  492 (672)
                       |+   .+++.||+||++..++......                           ...+++|.|+++++++|+| ++ +.
T Consensus       344 ~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd-~~~g~  422 (612)
T PRK12476        344 YGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVD-PDTGA  422 (612)
T ss_pred             cCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEe-CCCCc
Confidence             44   4899999999876544322110                           0125789999999999999 55 66


Q ss_pred             cccCCCCCCccEEEEccCcccccccCCchhhhhhcccC--------------CCCCceEecCcEEEEccCceEEEEecCC
Q 005874          493 YLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVD--------------DKGMRWFYTGDVGQVHADGCLEIIDRKK  558 (672)
Q Consensus       493 ~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~--------------~~~~gw~~TGDlg~~~~dG~l~i~gR~~  558 (672)
                      .+   +.|+.||||++|++++.|||++|+.|++.|...              +++++||+|||+|+++ ||.|+|+||+|
T Consensus       423 ~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~i~GR~~  498 (612)
T PRK12476        423 EL---PDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELYITGRIA  498 (612)
T ss_pred             CC---CCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCEEEEEeccC
Confidence            54   478999999999999999999999999988521              1235799999999985 99999999999


Q ss_pred             CeEecCCceeeccHHHHHHHh-cCcccce--EEEEecCCC--CeEEEEEEcChhHH-HHHHHHcChhhhhcCCC-CCcc-
Q 005874          559 DIVKLQHGEYVSLGKVEAALI-VSPYVDN--IMMHADPFH--SYCVALVVASQPAV-EEWAAKQGIVGKNARLD-KFEI-  630 (672)
Q Consensus       559 d~ik~~~G~~v~p~~iE~~l~-~~~~V~~--~~V~g~~~~--~~~va~v~~~~~~~-~~~~~~~~~~~~~~~L~-~~~~-  630 (672)
                      |+||+ +|++|+|.+||+++. .||.|.+  ++|++.+++  +.++++|++.++.. .+...  ....+++.|. .|++ 
T Consensus       499 d~I~~-~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~~~~~~~l~~~~~~~  575 (612)
T PRK12476        499 DLIVI-DGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAEDNERLVIVAERAAGTSRADPAP--AIDAIRAAVSRRHGLA  575 (612)
T ss_pred             cEEEE-CCcccCHHHHHHHHHHhcccccCCcEEEEEecCCCcceEEEEEEecCCcccccHHH--HHHHHHHHHHHhhCCc
Confidence            99998 699999999999997 5899999  677776544  57888888765421 11010  0133445555 4676 


Q ss_pred             eeEEEEeec--CCCCCCCccccccccChHHHHHHHHH
Q 005874          631 PAKIKLLSY--PWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       631 p~~i~~~~~--~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                      |..+.+++.  .|      +|++||++|++|++.|.+
T Consensus       576 p~~v~~v~~~~lP------~t~~GKi~r~~L~~~~~~  606 (612)
T PRK12476        576 VADVRLVPAGAIP------RTTSGKLARRACRAQYLD  606 (612)
T ss_pred             ceEEEEECCCCcC------cCCchHHHHHHHHHHHHc
Confidence            688888874  55      999999999999999865

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=3.3e-63  Score=608.13  Aligned_cols=524  Identities=19%  Similarity=0.156  Sum_probs=395.4

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF  137 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~  137 (672)
                      .+++++|+++++++||++|+......       .++       .+..+.+||+||.++++++|++|.+.|+++|++|+|+
T Consensus       236 ~~l~~~~~~~a~~~pd~~A~~~~~~~-------~~~-------~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~  301 (1389)
T TIGR03443       236 GAIHDIFADNAEKHPDRTCVVETPSF-------LDP-------SSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIY  301 (1389)
T ss_pred             CcHHHHHHHHHHhCCCCeEEEecccc-------ccc-------cCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            58999999999999999999863100       000       0123479999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccc---hHHHHhhhcC----CCCccEEEEecC
Q 005874          138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKE---LKKLVDLSGQ----LDTVKHVICMDA  210 (672)
Q Consensus       138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---~~~l~~~~~~----~~~l~~ii~~~~  210 (672)
                      ++|++++++++|||+++|++++|++|.++++++.++++.+++++++++...   ...+......    ...+..+...+.
T Consensus       302 ~~~~~~~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (1389)
T TIGR03443       302 AYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDD  381 (1389)
T ss_pred             ecCCHHHHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEeccc
Confidence            999999999999999999999999999999999999999999999987642   1111111110    011111111111


Q ss_pred             CCcccccccccCCCeEEEeHHHHHhccc--CCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCC
Q 005874          211 NIPSAVSSVEQSGRWKITSFADVQILGR--ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPD  288 (672)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~  288 (672)
                      .....        +.......+......  ..........++++++|+|||||||.||||+++|+++++.+.++...+ .
T Consensus       382 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-~  452 (1389)
T TIGR03443       382 GSLVG--------GSLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRF-G  452 (1389)
T ss_pred             ccccc--------cccccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-C
Confidence            00000        000000000000000  001111234578999999999999999999999999999988888887 8


Q ss_pred             CCCCcEEEEecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHh
Q 005874          289 LGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKK  368 (672)
Q Consensus       289 ~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~  368 (672)
                      +.++|++++++|++|..++..++.+|+.|+++++.+.....+.     ..+...++++++|+++++|++++.|...... 
T Consensus       453 ~~~~d~~~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~-----~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-  526 (1389)
T TIGR03443       453 LSENDKFTMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTP-----GRLAEWMAKYGATVTHLTPAMGQLLSAQATT-  526 (1389)
T ss_pred             CCCCCEEEEecCceecchHHHHHHHHhCCCEEEEcChhhccCH-----HHHHHHHHHhCCeEEEeCHHHHHHHHhcccc-
Confidence            9999999999999999998889999999999998443222111     1122238999999999999999877542100 


Q ss_pred             hhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCc
Q 005874          369 VDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAP  447 (672)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~  447 (672)
                                                                       ..++||.+++||+++++...+.+.... +++
T Consensus       527 -------------------------------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~  557 (1389)
T TIGR03443       527 -------------------------------------------------PIPSLHHAFFVGDILTKRDCLRLQTLAENVC  557 (1389)
T ss_pred             -------------------------------------------------cCCCccEEEEecccCCHHHHHHHHHhCCCCE
Confidence                                                             013799999999999999988887764 789


Q ss_pred             eecccCcccccccccccCCCC-----------CCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccc
Q 005874          448 IGQGYGLTETCAGGTFSEVDD-----------SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGY  516 (672)
Q Consensus       448 v~~~YG~TE~~~~~~~~~~~~-----------~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY  516 (672)
                      ++|+||+||++..++......           ....++|.|+++++++|+| +++...+ ++.|..|||||+||++++||
T Consensus       558 l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd-~~~~~~~-~~~G~~GEL~i~G~~v~~GY  635 (1389)
T TIGR03443       558 IVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVN-RNDRTQT-CGVGEVGEIYVRAGGLAEGY  635 (1389)
T ss_pred             EEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEEC-CccCCCc-CCCCCceEEEecccccchhc
Confidence            999999999987665432211           1235789999999999999 4332222 46889999999999999999


Q ss_pred             cCCchhhhhhcccC------------------------CCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccH
Q 005874          517 FKNEEKTKEVYKVD------------------------DKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLG  572 (672)
Q Consensus       517 ~~~~~~t~~~~~~~------------------------~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~  572 (672)
                      +++|+.|+++|..+                        .+.+|||+|||+|++++||.|+|+||+||+||+ +|++|+|.
T Consensus       636 ~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki-~G~rI~p~  714 (1389)
T TIGR03443       636 LGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKI-RGFRIELG  714 (1389)
T ss_pred             CCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEe-CcEEecHH
Confidence            99999999998532                        124689999999999999999999999999997 69999999


Q ss_pred             HHHHHHhcCcccceEEEEecCCC---CeEEEEEEcChhH--HHH----------------------HHHHcChhhhhcCC
Q 005874          573 KVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQPA--VEE----------------------WAAKQGIVGKNARL  625 (672)
Q Consensus       573 ~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~~~--~~~----------------------~~~~~~~~~~~~~L  625 (672)
                      +||++|.+||.|.+++|++..++   ..++|+|++....  ...                      .........++++|
T Consensus       715 eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L  794 (1389)
T TIGR03443       715 EIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKL  794 (1389)
T ss_pred             HHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhhhhhhhhhHHHHHHHHHhhC
Confidence            99999999999999998875443   4699999987221  000                      00111125667899


Q ss_pred             CCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHHHH
Q 005874          626 DKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLA  668 (672)
Q Consensus       626 ~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~  668 (672)
                      |.|++|..+++++..|      +|++|||+|++|++.+.++++
T Consensus       795 p~y~~P~~~~~~~~lP------~t~~GKidr~~L~~~~~~~~~  831 (1389)
T TIGR03443       795 PSYAIPTVIVPLKKLP------LNPNGKVDKPALPFPDTAQLA  831 (1389)
T ss_pred             CcccCCceEEEcccCC------CCCCccccHhhcCCCchhhhh
Confidence            9999999999999887      999999999999866555443

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=2.5e-62  Score=547.61  Aligned_cols=504  Identities=24%  Similarity=0.333  Sum_probs=405.7

Q ss_pred             CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874           57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI  136 (672)
Q Consensus        57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i  136 (672)
                      ..|+.++|.+.++++|+++|+...+          ++           ..+||+||.++++++|..|.+.|+++|++|++
T Consensus        15 ~~~l~~~l~~~~~~~~~~~ai~~~~----------~~-----------~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i   73 (559)
T PRK08315         15 EQTIGQLLDRTAARYPDREALVYRD----------QG-----------LRWTYREFNEEVDALAKGLLALGIEKGDRVGI   73 (559)
T ss_pred             hccHHHHHHHHHHHCCCCeEEEEcC----------CC-----------eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            4589999999999999999998741          22           36999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccch-----HHHHhhhcC-------------
Q 005874          137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL-----KKLVDLSGQ-------------  198 (672)
Q Consensus       137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~~-------------  198 (672)
                      +++|++++++++|||+++|++++|+++..+.+++..+++.++++.+++++...     ..+.+....             
T Consensus        74 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (559)
T PRK08315         74 WAPNVPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSAR  153 (559)
T ss_pred             ECCCChHHHHHHHHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhccccccccccc
Confidence            99999999999999999999999999999999999999999999999987542     112221111             


Q ss_pred             CCCccEEEEecCCCcccccccccCCCeEEEeHHHHHhcccCC-----CCCCCCCCCCCeEEEEeecCCCCCCceEEeehH
Q 005874          199 LDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGREN-----PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHG  273 (672)
Q Consensus       199 ~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~  273 (672)
                      .+..+.++.++...           ......+.++.......     ........++++++++|||||||.||+|.+||+
T Consensus       154 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~  222 (559)
T PRK08315        154 LPELRRVIFLGDEK-----------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHR  222 (559)
T ss_pred             CCCceeEEeecccC-----------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHH
Confidence            13344454443321           11223455554432111     111223456889999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEee----CCcccccCchhhhhcccccccccccc
Q 005874          274 NVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY----GTPLTLTDTSSKIKKGTQGDASVLRP  348 (672)
Q Consensus       274 ~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~----~~~~~l~~~~~~~~~~~~~~i~~~k~  348 (672)
                      +++..+..+...+ .++++|+++..+|++|.+++.. .+.++..|+++++    +++..+++.           ++++++
T Consensus       223 ~l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~-----------l~~~~~  290 (559)
T PRK08315        223 NILNNGYFIGEAM-KLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAA-----------VEEERC  290 (559)
T ss_pred             HHHHHHHHHHHhc-CCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHH-----------HHHcCC
Confidence            9998888887777 8999999999999999999876 6678999999985    445555554           999999


Q ss_pred             eeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEc
Q 005874          349 TVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSG  428 (672)
Q Consensus       349 t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~g  428 (672)
                      |+++++|.++..+.......                                               ....+++|.+++|
T Consensus       291 t~~~~~P~~~~~~~~~~~~~-----------------------------------------------~~~~~~lr~~~~~  323 (559)
T PRK08315        291 TALYGVPTMFIAELDHPDFA-----------------------------------------------RFDLSSLRTGIMA  323 (559)
T ss_pred             eEEecchHHHHHHHhCcccC-----------------------------------------------CCCchhhheeEec
Confidence            99999999998776421110                                               0012379999999


Q ss_pred             CCCCCHHHHHHHHHHhCCc-eecccCcccccccccccCCCC---CCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccE
Q 005874          429 GAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEVDD---SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGE  504 (672)
Q Consensus       429 G~~l~~~~~~~~~~~~~~~-v~~~YG~TE~~~~~~~~~~~~---~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GE  504 (672)
                      |+++++++.+.+...++.. +++.||+||++..++......   ....++|.|+++++++|+|.+++..+   +.|+.||
T Consensus       324 G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~---~~g~~GE  400 (559)
T PRK08315        324 GSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETV---PRGEQGE  400 (559)
T ss_pred             CCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcC---CCCCceE
Confidence            9999999999999888654 999999999987655443322   24578999999999999994336554   5788999


Q ss_pred             EEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCccc
Q 005874          505 IVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV  584 (672)
Q Consensus       505 i~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V  584 (672)
                      |+|+|++++.||+++|+.++..|.    .++||+|||+|++++||.++++||.+|+||. +|++|+|.+||+++.++|+|
T Consensus       401 l~v~g~~~~~gy~~~~~~~~~~~~----~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~-~G~~v~~~eIE~~l~~~~~v  475 (559)
T PRK08315        401 LCTRGYSVMKGYWNDPEKTAEAID----ADGWMHTGDLAVMDEEGYVNIVGRIKDMIIR-GGENIYPREIEEFLYTHPKI  475 (559)
T ss_pred             EEEECchhhhhhcCChhHHhhcCC----CCCCEEccceEEEcCCceEEEEeeccceEEE-CCEEEcHHHHHHHHHhCCCc
Confidence            999999999999999999998886    7899999999999999999999999999996 69999999999999999999


Q ss_pred             ceEEEEecCCC---CeEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHH
Q 005874          585 DNIMMHADPFH---SYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRK  661 (672)
Q Consensus       585 ~~~~V~g~~~~---~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~  661 (672)
                      .+++|++.+++   ..++++|++.++...+....  ...+.+.|+.|++|..++++++.|      +|++||++|.+|++
T Consensus       476 ~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l--~~~l~~~l~~~~~P~~i~~v~~lP------~t~~GK~~r~~L~~  547 (559)
T PRK08315        476 QDVQVVGVPDEKYGEEVCAWIILRPGATLTEEDV--RDFCRGKIAHYKIPRYIRFVDEFP------MTVTGKIQKFKMRE  547 (559)
T ss_pred             eEEEEEecCCCCCCeEEEEEEEeCCCCCCCHHHH--HHHHHhhcccccCCcEEEEcccCC------CCCCCceeHHHHHH
Confidence            99999998765   35888888765432111111  155668999999999999999987      99999999999999


Q ss_pred             HHHHHH
Q 005874          662 AFADDL  667 (672)
Q Consensus       662 ~~~~~i  667 (672)
                      ++.+..
T Consensus       548 ~~~~~~  553 (559)
T PRK08315        548 MMIEEL  553 (559)
T ss_pred             HHHhhh
Confidence            887654

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=1.2e-63  Score=650.39  Aligned_cols=488  Identities=21%  Similarity=0.271  Sum_probs=402.7

Q ss_pred             CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874           55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV  134 (672)
Q Consensus        55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V  134 (672)
                      +...+++++|+++++++||++|+.+            ++.           .+||+||.++++++|+.|.++|+++|++|
T Consensus      3092 ~~~~~~~~l~~~~a~~~p~~~Av~~------------~~~-----------~lTY~eL~~~a~~lA~~L~~~gv~~g~~V 3148 (3956)
T PRK12467       3092 PSERLVHQLIEAQVARTPEAPALVF------------GDQ-----------QLSYAELNRRANRLAHRLIAIGVGPDVLV 3148 (3956)
T ss_pred             CccccHHHHHHHHHHhCCCcceEee------------CCc-----------ccCHHHHHHHHHHHHHHHHHcCCCCCCeE
Confidence            3447999999999999999999987            333           69999999999999999999999999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcc
Q 005874          135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS  214 (672)
Q Consensus       135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~  214 (672)
                      +|+++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++....+.+...    ... .++.++.    
T Consensus      3149 ~l~~~~s~~~vv~~lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~----~~~-~~~~~~~---- 3219 (3956)
T PRK12467       3149 GVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP----AGD-TALTLDR---- 3219 (3956)
T ss_pred             EEEeCCCHHHHHHHHHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc----cCC-ceeeecc----
Confidence            9999999999999999999999999999999999999999999999999998664433211    111 1111111    


Q ss_pred             cccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcE
Q 005874          215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV  294 (672)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~  294 (672)
                                        ..........+.....++++++|+|||||||.||||+++|+++++.+......+ .++++|+
T Consensus      3220 ------------------~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~ 3280 (3956)
T PRK12467       3220 ------------------LDLNGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAY-ELDANDR 3280 (3956)
T ss_pred             ------------------hhhcccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhc-CCCcCCE
Confidence                              111111111222345689999999999999999999999999999999988888 8999999


Q ss_pred             EEEecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCc
Q 005874          295 YLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGG  374 (672)
Q Consensus       295 ~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~  374 (672)
                      +++++|++|..+...++.+|..|+++++.+ ....+     +..+...++++++|++.++|+++..+.+....       
T Consensus      3281 ~l~~~~~~fd~~~~~~~~~L~~G~~l~i~~-~~~~~-----~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~------- 3347 (3956)
T PRK12467       3281 VLLFMSFSFDGAQERFLWTLICGGCLVVRD-NDLWD-----PEELWQAIHAHRISIACFPPAYLQQFAEDAGG------- 3347 (3956)
T ss_pred             EEEecCccHhHHHHHHHHHHhCCCEEEECC-cccCC-----HHHHHHHHHHcCCEEEEcCHHHHHHHHhcccc-------
Confidence            999999999999888999999999999844 21111     11122339999999999999999988652110       


Q ss_pred             hhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCceecccC
Q 005874          375 LSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQGYG  453 (672)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG  453 (672)
                                                                ...++||.+++||+++++++.+.++..+ +++++|+||
T Consensus      3348 ------------------------------------------~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG 3385 (3956)
T PRK12467       3348 ------------------------------------------ADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYG 3385 (3956)
T ss_pred             ------------------------------------------cCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcc
Confidence                                                      0123799999999999999999998776 678999999


Q ss_pred             cccccccccccCCCC-----CCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcc
Q 005874          454 LTETCAGGTFSEVDD-----SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYK  528 (672)
Q Consensus       454 ~TE~~~~~~~~~~~~-----~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~  528 (672)
                      +||+++.++......     ....++|+|++|++++|+| ++++.+   +.|+.|||+|+|+++++||+++|+.|+++|.
T Consensus      3386 ~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~v---p~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~ 3461 (3956)
T PRK12467       3386 PTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLD-GQLNPV---PVGVAGELYIGGVGLARGYHQRPSLTAERFV 3461 (3956)
T ss_pred             cchhEeeeEEEecccccccCCCCCCCccccCCCEEEEEC-CCCCCC---CCCCCceEEEcchhhhhhccCCcccchhhcc
Confidence            999987766543321     1236899999999999999 666654   5899999999999999999999999999998


Q ss_pred             cCC---CCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCC--CCeEEEEEE
Q 005874          529 VDD---KGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPF--HSYCVALVV  603 (672)
Q Consensus       529 ~~~---~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~--~~~~va~v~  603 (672)
                      .++   ++++||+|||+|++++||.|+++||+||+||+ +|++|+|.|||++|.++|+|.+|+|++...  .++++|+|+
T Consensus      3462 ~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki-~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~~~~~~lva~v~ 3540 (3956)
T PRK12467       3462 ADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKI-RGFRIELGEIEARLLQHPSVREAVVLARDGAGGKQLVAYVV 3540 (3956)
T ss_pred             CCCCCCCCceeeccchhheecCCCcEEEeccccceEee-ceEeecHHHHHHHHhhCcccceEEEEEecCCCCcEEEEEEe
Confidence            653   35689999999999999999999999999998 599999999999999999999999998643  357999999


Q ss_pred             cChhHH--HHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHH
Q 005874          604 ASQPAV--EEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAF  663 (672)
Q Consensus       604 ~~~~~~--~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~  663 (672)
                      +.....  .+...    ..++++||.|++|..|++++..|      +|++||++|++|.+.+
T Consensus      3541 ~~~~~~~~~~~l~----~~l~~~Lp~y~vP~~~~~l~~lP------~t~~GKidR~~L~~~~ 3592 (3956)
T PRK12467       3541 PADPQGDWRETLR----DHLAASLPDYMVPAQLLVLAAMP------LGPNGKVDRKALPDPD 3592 (3956)
T ss_pred             CCCCCcccHHHHH----HHHhccCChhhCCCeeeeeccCC------CCCCCccchhhcCCCC
Confidence            876421  22222    56678999999999999999987      9999999999998754

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8e-62  Score=541.09  Aligned_cols=507  Identities=21%  Similarity=0.246  Sum_probs=399.2

Q ss_pred             CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874           55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV  134 (672)
Q Consensus        55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V  134 (672)
                      +...++.++|.+.++++|+++|+..            +++           .+||+||.+++.++|..|.+.|+++|++|
T Consensus         7 ~~~~~l~~~l~~~a~~~p~~~a~~~------------~~~-----------~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V   63 (540)
T PRK06164          7 PRADTLASLLDAHARARPDAVALID------------EDR-----------PLSRAELRALVDRLAAWLAAQGVRRGDRV   63 (540)
T ss_pred             cCCCCHHHHHHHHHHhCCCCeEEec------------CCC-----------cccHHHHHHHHHHHHHHHHHhCCCCCCEE
Confidence            5567899999999999999999984            333           69999999999999999999999999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccch-----HHHHhhhc-CCCCccEEEEe
Q 005874          135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL-----KKLVDLSG-QLDTVKHVICM  208 (672)
Q Consensus       135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~-~~~~l~~ii~~  208 (672)
                      +++++|+.+|+++++||+++|++++|+++..+.+++.+++++++++.+|++++..     +.+..... ..+.++.++.+
T Consensus        64 ~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (540)
T PRK06164         64 AVWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVV  143 (540)
T ss_pred             EEEcCCcHHHHHHHHHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEe
Confidence            9999999999999999999999999999999999999999999999999987642     22222211 13445556655


Q ss_pred             cCCCcccccccccCCCeEEEeHHHHHhcccCCCC---CCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhh
Q 005874          209 DANIPSAVSSVEQSGRWKITSFADVQILGRENPV---DADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI  285 (672)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~  285 (672)
                      +.......       ......+.++.........   ......++++++++|||||||.||+|++||+++.+.+..+...
T Consensus       144 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~  216 (540)
T PRK06164        144 DDAADATP-------APAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARA  216 (540)
T ss_pred             ccCcccCC-------CCCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHh
Confidence            42111110       0000001111111100000   0122346889999999999999999999999999998888888


Q ss_pred             cCCCCCCcEEEEecChHhHHHHHHHHHHhHhCcEEeeC---CcccccCchhhhhcccccccccccceeeecchHHHHHHH
Q 005874          286 VPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYG---TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVR  362 (672)
Q Consensus       286 ~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~---~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~  362 (672)
                      + ++.++|++++++|++|.+++...+.++..|+++++.   ++..+.+.           ++++++|+++++|.++..+.
T Consensus       217 ~-~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------l~~~~~t~~~~~p~~l~~l~  284 (540)
T PRK06164        217 Y-GYDPGAVLLAALPFCGVFGFSTLLGALAGGAPLVCEPVFDAARTARA-----------LRRHRVTHTFGNDEMLRRIL  284 (540)
T ss_pred             c-CCCCCCEEEEcCCchhHHHHHHHHHHHhcCceEEecCCCCHHHHHHH-----------HHHhCCeeecCCHHHHHHHH
Confidence            8 889999999999999999998888899999999983   33344444           99999999999999999987


Q ss_pred             HHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcC-CCCCHHHHHHHH
Q 005874          363 DGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGG-APLSADTQRFIN  441 (672)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG-~~l~~~~~~~~~  441 (672)
                      +....                                                ....++++.+..+| .+...++.+++.
T Consensus       285 ~~~~~------------------------------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~  316 (540)
T PRK06164        285 DTAGE------------------------------------------------RADFPSARLFGFASFAPALGELAALAR  316 (540)
T ss_pred             Hhhcc------------------------------------------------cCCCcceeeeeeccCCcchHHHHHHHh
Confidence            64100                                                00113778776665 566667777776


Q ss_pred             HHhCCceecccCcccccccccccCCCCC---CCCccCCCc-CCeEEEEEecCCCCcccCCCCCCccEEEEccCccccccc
Q 005874          442 ICLGAPIGQGYGLTETCAGGTFSEVDDS---SVGRVGAPL-PCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYF  517 (672)
Q Consensus       442 ~~~~~~v~~~YG~TE~~~~~~~~~~~~~---~~~~~G~p~-~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~  517 (672)
                      .. ++++++.||+||+++..+.......   .....|.|. ++++++|+|++++..+   +.|+.|||||+|++++.||+
T Consensus       317 ~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~---~~g~~Gel~v~g~~~~~gY~  392 (540)
T PRK06164        317 AR-GVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALL---PDGESGEIEIRAPSLMRGYL  392 (540)
T ss_pred             hc-CCceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCC---CCCCeeEEEEeccccccccc
Confidence            65 8999999999999876655443221   234567775 8999999995555544   57889999999999999999


Q ss_pred             CCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC--
Q 005874          518 KNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH--  595 (672)
Q Consensus       518 ~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~--  595 (672)
                      ++++.|++.|.    .+|||+|||+|++++||.+++.||.+|+||+ +|++|+|++||+++.++|+|.+++|++.+..  
T Consensus       393 ~~~~~t~~~~~----~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~-~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~~~  467 (540)
T PRK06164        393 DNPDATARALT----DDGYFRTGDLGYTRGDGQFVYQTRMGDSLRL-GGFLVNPAEIEHALEALPGVAAAQVVGATRDGK  467 (540)
T ss_pred             CCchhhhhccc----CCCceecCCeEEEcCCceEEEEeecCCeEEE-CCEEcCHHHHHHHHHhCCCceeEEEEecCCCCc
Confidence            99999999997    7899999999999999999999999999998 6999999999999999999999999996533  


Q ss_pred             CeEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCcccccc---ccChHHHHHHHHHHHH
Q 005874          596 SYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAAL---KIKREAIRKAFADDLA  668 (672)
Q Consensus       596 ~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~g---Ki~R~~l~~~~~~~i~  668 (672)
                      ..++++++++++...+...  ....+++.|+.+++|+.+++++..|      +|++|   |++|+.|++++++...
T Consensus       468 ~~~~~~vv~~~~~~~~~~~--l~~~~~~~l~~~~~P~~i~~~~~~P------~t~~g~~~Ki~r~~L~~~~~~~~~  535 (540)
T PRK06164        468 TVPVAFVIPTDGASPDEAG--LMAACREALAGFKVPARVQVVEAFP------VTESANGAKIQKHRLREMAQARLA  535 (540)
T ss_pred             eeEEEEEEeCCCCCCCHHH--HHHHHHhhcccCcCCcEEEEecCCC------CCCCCccccccHHHHHHHHHHhhh
Confidence            4689999987653222111  1256678999999999999999887      89988   9999999999887543

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.7e-62  Score=538.74  Aligned_cols=495  Identities=23%  Similarity=0.276  Sum_probs=404.1

Q ss_pred             CCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 005874           56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA  135 (672)
Q Consensus        56 ~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~  135 (672)
                      ...|+.++|.+.++++|+++|+.+            +++           .+||+||.+++.++|..|.+.|+++|++|+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~   66 (524)
T PRK06188         10 SGATYGHLLVSALKRYPDRPALVL------------GDT-----------RLTYGQLADRISRYIQAFEALGLGTGDAVA   66 (524)
T ss_pred             CCccHHHHHHHHHHHCCCCeEEEE------------CCC-----------cccHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            346899999999999999999986            333           699999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECcc-chHHHHhhhcCCCCccEEEEecCCCcc
Q 005874          136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK-ELKKLVDLSGQLDTVKHVICMDANIPS  214 (672)
Q Consensus       136 i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~l~~~~~~~~~l~~ii~~~~~~~~  214 (672)
                      ++++|+++++++++||++.|++++|+++..+.+.+.++++.++++.+++++. ....+.+.....+.++.++.+..... 
T Consensus        67 i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  145 (524)
T PRK06188         67 LLSLNRPEVLMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPD-  145 (524)
T ss_pred             EECCCCHHHHHHHHHHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccc-
Confidence            9999999999999999999999999999999999999999999999999876 44444444444455555555443211 


Q ss_pred             cccccccCCCeEEEeHHHHHhcccCC--CCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCC
Q 005874          215 AVSSVEQSGRWKITSFADVQILGREN--PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSK  292 (672)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~  292 (672)
                                     +.++.......  ........++++++++|||||||.||+|++||.++.+.+......+ .+..+
T Consensus       146 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~-~~~~~  209 (524)
T PRK06188        146 ---------------GVDLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEW-EWPAD  209 (524)
T ss_pred             ---------------hhhHHHhhhccCcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-CCCcC
Confidence                           11111111100  1111223456799999999999999999999999999888888877 88999


Q ss_pred             cEEEEecChHhHHHHHHHHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhh
Q 005874          293 DVYLAYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKV  369 (672)
Q Consensus       293 d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~  369 (672)
                      |++++.+|++|..++. .+.+++.|+++++   .++..+.+.           ++++++|+++++|+++..+++..... 
T Consensus       210 ~~~l~~~pl~~~~g~~-~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~l~~l~~~~~~~-  276 (524)
T PRK06188        210 PRFLMCTPLSHAGGAF-FLPTLLRGGTVIVLAKFDPAEVLRA-----------IEEQRITATFLVPTMIYALLDHPDLR-  276 (524)
T ss_pred             cEEEEecCchhhhhHH-HHHHHHcCCEEEEcCCCCHHHHHHH-----------HHHhCCEEEEehHHHHHHHHhCcCcc-
Confidence            9999999999998875 4677899999999   344444444           99999999999999999887632110 


Q ss_pred             hhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCcee
Q 005874          370 DAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIG  449 (672)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~  449 (672)
                                                                    ....+++|.+++||++++++..+.+.+.+++.++
T Consensus       277 ----------------------------------------------~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~  310 (524)
T PRK06188        277 ----------------------------------------------TRDLSSLETVYYGASPMSPVRLAEAIERFGPIFA  310 (524)
T ss_pred             ----------------------------------------------CCCCcceeEEEEcCCCCCHHHHHHHHHHhCchhh
Confidence                                                          0112489999999999999998888888899999


Q ss_pred             cccCcccccccccccCCCC------CCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhh
Q 005874          450 QGYGLTETCAGGTFSEVDD------SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT  523 (672)
Q Consensus       450 ~~YG~TE~~~~~~~~~~~~------~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t  523 (672)
                      +.||+||++..++......      ...+++|.|+++++++|+| +++..+   +.|..|||+++|+.++.||+++++.+
T Consensus       311 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~-~~~~~~---~~g~~Gel~v~~~~~~~gy~~~~~~~  386 (524)
T PRK06188        311 QYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLD-EDGREV---AQGEVGEICVRGPLVMDGYWNRPEET  386 (524)
T ss_pred             heeCccccCCceeecCchhccccccccCCccccccCCcEEEEEc-CCCCCC---CCCCeeEEEEECcchhhhhcCChHHh
Confidence            9999999976555443322      2447899999999999999 666544   57889999999999999999999999


Q ss_pred             hhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEE
Q 005874          524 KEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVA  600 (672)
Q Consensus       524 ~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va  600 (672)
                      ...|     .+|||+|||+|++++||.+++.||.+++|++ +|++|+|++||+++.++++|.+++|++.+++   +.+++
T Consensus       387 ~~~~-----~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~  460 (524)
T PRK06188        387 AEAF-----RDGWLHTGDVAREDEDGFYYIVDRKKDMIVT-GGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTA  460 (524)
T ss_pred             hhhh-----cCCceeecceEEEcCCccEEEEeccccceec-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEE
Confidence            8888     6799999999999999999999999999997 6999999999999999999999999997655   36888


Q ss_pred             EEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHHH
Q 005874          601 LVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDL  667 (672)
Q Consensus       601 ~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i  667 (672)
                      ++++++....+.....  ..+.+.++.+++|..|+++++.|      +|++||++|++|++.|.+..
T Consensus       461 ~v~~~~~~~~~~~~l~--~~~~~~l~~~~~p~~i~~v~~~P------~t~~gKi~r~~L~~~~~~~~  519 (524)
T PRK06188        461 VVVLRPGAAVDAAELQ--AHVKERKGSVHAPKQVDFVDSLP------LTALGKPDKKALRARYWEGR  519 (524)
T ss_pred             EEEECCCCCCCHHHHH--HHHHHhcccCCCCcEEEEecCCC------CCccccccHHHHHHHHHhhc
Confidence            8887654322111111  55678999999999999999887      99999999999999997643

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.2e-61  Score=539.14  Aligned_cols=509  Identities=19%  Similarity=0.248  Sum_probs=403.1

Q ss_pred             CCCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCE
Q 005874           54 WEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEER  133 (672)
Q Consensus        54 ~~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~  133 (672)
                      +....|+.++|++.++++||++++....          +         +..+.+||+||.++++++|++|.+.|+++|++
T Consensus         6 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~----------~---------~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~   66 (542)
T PRK06018          6 QDWPLLCHRIIDHAARIHGNREVVTRSV----------E---------GPIVRTTYAQIHDRALKVSQALDRDGIKLGDR   66 (542)
T ss_pred             hcCCCCHHHHHHHHHHhCCCceEEEeec----------c---------CCceEEEHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence            3445799999999999999999997421          1         23457999999999999999999999999999


Q ss_pred             EEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCc
Q 005874          134 VAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIP  213 (672)
Q Consensus       134 V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~  213 (672)
                      |+++++|+++++++++||+++|++++|+++..+.+++.++++.++++.++++.+..+.+.+.....+.++.++...+...
T Consensus        67 v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (542)
T PRK06018         67 VATIAWNTWRHLEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAH  146 (542)
T ss_pred             EEEEcCCchHHHHHHHHHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEeccccc
Confidence            99999999999999999999999999999999999999999999999999999888878777666666666666543211


Q ss_pred             ccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHH-HHHH-HHHhhcCCCCC
Q 005874          214 SAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVL-ATVS-AVMTIVPDLGS  291 (672)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~-~~~~-~~~~~~~~~~~  291 (672)
                      ..     .........|.++...... ........++++++++|||||||.||||++||++.+ .... .....+ +++.
T Consensus       147 ~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-~~~~  219 (542)
T PRK06018        147 MP-----QTTLKNAVAYEEWIAEADG-DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-GTSA  219 (542)
T ss_pred             cc-----ccCccccccHHHHhccCCc-ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhc-CCCC
Confidence            00     0001123356665543321 111233456789999999999999999999999743 3222 233344 7889


Q ss_pred             CcEEEEecChHhHHHHHHHHHHhHhCcEEeeC----CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHH
Q 005874          292 KDVYLAYLPLAHVLELVAENLIAGVGSAIGYG----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRK  367 (672)
Q Consensus       292 ~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~----~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~  367 (672)
                      +|+++..+|++|.+++...+.++..|+++++.    ++..+.+.           ++++++|++.++|+++..+.+....
T Consensus       220 ~d~~~~~~p~~h~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~-----------l~~~~~t~~~~~p~~~~~l~~~~~~  288 (542)
T PRK06018        220 ADTMLPVVPLFHANSWGIAFSAPSMGTKLVMPGAKLDGASVYEL-----------LDTEKVTFTAGVPTVWLMLLQYMEK  288 (542)
T ss_pred             CCEEEEecCHHHHhhhHHHHhhhhcCceEEccCcCCCHHHHHHH-----------HHhcCCceeecCcHHHHHHHhcccc
Confidence            99999999999999988777889999999873    23333333           8999999999999999988764321


Q ss_pred             hhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCc
Q 005874          368 KVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAP  447 (672)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~  447 (672)
                      ...                                               ..+++|.+++||+++++++.+.+++ ++++
T Consensus       289 ~~~-----------------------------------------------~~~~lr~~~~~G~~l~~~~~~~~~~-~~~~  320 (542)
T PRK06018        289 EGL-----------------------------------------------KLPHLKMVVCGGSAMPRSMIKAFED-MGVE  320 (542)
T ss_pred             cCC-----------------------------------------------CcccceEEEEcCCCCCHHHHHHHHH-hCCC
Confidence            100                                               1137999999999999999999999 8999


Q ss_pred             eecccCcccccccccccCCCC-----------CCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccc
Q 005874          448 IGQGYGLTETCAGGTFSEVDD-----------SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGY  516 (672)
Q Consensus       448 v~~~YG~TE~~~~~~~~~~~~-----------~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY  516 (672)
                      +++.||+||++.+++......           ....++|.|.++++++|+| +++..++ .+.+..|||+++|++++.||
T Consensus       321 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~-~~~~~~Gel~i~g~~~~~gy  398 (542)
T PRK06018        321 VRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITD-DAGKELP-WDGKTFGRLKVRGPAVAAAY  398 (542)
T ss_pred             eEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEEC-CCCCCCC-CCCCceeEEEEecCCcchhh
Confidence            999999999987655432111           0135789999999999999 6666554 22235799999999999999


Q ss_pred             cCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC-
Q 005874          517 FKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH-  595 (672)
Q Consensus       517 ~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~-  595 (672)
                      +++.   ...++    .+|||+|||+|++++||.+++.||.+|+|+. +|++|+|.+||+++.+||+|.+|+|++..++ 
T Consensus       399 ~~~~---~~~~~----~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~  470 (542)
T PRK06018        399 YRVD---GEILD----DDGFFDTGDVATIDAYGYMRITDRSKDVIKS-GGEWISSIDLENLAVGHPKVAEAAVIGVYHPK  470 (542)
T ss_pred             hcCc---ccEec----CCcEEEcCCEEEEcCCccEEEEecCCCeEEE-CCEEECHHHHHHHHHhCCcceeEEEEeccCCC
Confidence            9842   33344    7899999999999999999999999999996 6999999999999999999999999997654 


Q ss_pred             --CeEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874          596 --SYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       596 --~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                        +.++++|++.++...+...  ....+.++|+.+++|..+.++++.|      +|++||++|++|+++|.+
T Consensus       471 ~~~~~~~~v~~~~~~~~~~~~--l~~~~~~~l~~~~~P~~i~~v~~iP------~t~~GKi~r~~L~~~~~~  534 (542)
T PRK06018        471 WDERPLLIVQLKPGETATREE--ILKYMDGKIAKWWMPDDVAFVDAIP------HTATGKILKTALREQFKD  534 (542)
T ss_pred             cCceeEEEEEeCCCCCCCHHH--HHHHHHhhCccccCCcEEEEeccCC------CCCcchhhHHHHHHHHhc
Confidence              3588888876553211111  1155668999999999999999987      999999999999999876

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=2.3e-61  Score=547.48  Aligned_cols=517  Identities=17%  Similarity=0.118  Sum_probs=386.3

Q ss_pred             CHH-HHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 005874           59 TLA-ELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF  137 (672)
Q Consensus        59 tl~-~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~  137 (672)
                      |+. ..|.+.++.+||++|+.+.+.         ++.      .++.+.+||+||.+++.++|+.|+++|+++||+|+++
T Consensus       175 n~~~~~l~~~~~~~pd~~Ai~~~~e---------~~~------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~  239 (728)
T PLN03052        175 NVAECCLTPKPSKTDDSIAIIWRDE---------GSD------DLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAID  239 (728)
T ss_pred             EHHHHHHHHHhccCCCCeEEEEECC---------CCC------CCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            443 456665567899999998531         111      1245689999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccch------HHHHhhhcCCCCccEEEEecCC
Q 005874          138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL------KKLVDLSGQLDTVKHVICMDAN  211 (672)
Q Consensus       138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~l~~~~~~~~~l~~ii~~~~~  211 (672)
                      ++|++|+++++|||+++|++++|+++.++++++.+++++++++++|+++...      +....+.....  ..++++...
T Consensus       240 ~pn~~e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~--~~~iv~~~~  317 (728)
T PLN03052        240 MPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA--PKAIVLPAD  317 (728)
T ss_pred             eCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC--CcEEEEeCC
Confidence            9999999999999999999999999999999999999999999999987532      22222211111  123332221


Q ss_pred             CcccccccccCCCeEEEeHHHHHhcccC----CCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcC
Q 005874          212 IPSAVSSVEQSGRWKITSFADVQILGRE----NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP  287 (672)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~  287 (672)
                      .....  ..  ......+|+++......    ...++....++++++|+|||||||.||||+++|.+++.........+ 
T Consensus       318 ~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~-  392 (728)
T PLN03052        318 GKSVR--VK--LREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHL-  392 (728)
T ss_pred             CCccc--cc--cccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhc-
Confidence            10000  00  00112457776543221    11112223468999999999999999999999999887766655556 


Q ss_pred             CCCCCcEEEEecChHhHHHHHHHHHHhHhCcEEeeCC--c--ccccCchhhhhcccccccccccceeeecchHHHHHHHH
Q 005874          288 DLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGT--P--LTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRD  363 (672)
Q Consensus       288 ~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~--~--~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~  363 (672)
                      +++++|++++++|+.|+++....+.+|..|+++++.+  |  ..+.+.           ++++++|++.++|+++..+.+
T Consensus       393 ~l~~~d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~-----------i~~~~vT~l~~~Pt~l~~l~~  461 (728)
T PLN03052        393 DIRKGDIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKF-----------VQDAKVTMLGTVPSIVKTWKN  461 (728)
T ss_pred             CCCCCcEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHH-----------HHHHCCCEEEECHHHHHHHHh
Confidence            8899999999999999999877788999999999832  2  233333           899999999999999988765


Q ss_pred             HHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHH
Q 005874          364 GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC  443 (672)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~  443 (672)
                      ....                                               +....++||.+++||++++++...++...
T Consensus       462 ~~~~-----------------------------------------------~~~dlssLr~i~s~Ge~l~~~~~~~~~~~  494 (728)
T PLN03052        462 TNCM-----------------------------------------------AGLDWSSIRCFGSTGEASSVDDYLWLMSR  494 (728)
T ss_pred             cCCc-----------------------------------------------ccCChhheeEEEecCCCCCHHHHHHHHHh
Confidence            2100                                               01112489999999999999998888877


Q ss_pred             hC-CceecccCccccccccccc-CCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCC--CccEEEEccCc--cccccc
Q 005874          444 LG-APIGQGYGLTETCAGGTFS-EVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPM--PRGEIVIAGPN--VTVGYF  517 (672)
Q Consensus       444 ~~-~~v~~~YG~TE~~~~~~~~-~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g--~~GEi~v~g~~--v~~gY~  517 (672)
                      ++ .++++.||+||+++..... .......+++|.|.++++++|+| ++++.++   .|  +.|||+++++.  ...+|+
T Consensus       495 ~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d-~~g~~v~---~g~~~~GEL~v~~~~~~~~~~~~  570 (728)
T PLN03052        495 AGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFILD-DSGNPYP---DDAPCTGELALFPLMFGASSTLL  570 (728)
T ss_pred             cCCCCeEeeccChhhCcccccCCCCCCCCCCccccCCCCceEEEEC-CCCCCCC---CCCCceEEEEEeCCCCCCCcccc
Confidence            65 5899999999987543322 22233457899999999999999 7777654   44  36999998653  335677


Q ss_pred             CCchhhhhhcccCC--CCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHH-hcCcccceEEEEecCC
Q 005874          518 KNEEKTKEVYKVDD--KGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAAL-IVSPYVDNIMMHADPF  594 (672)
Q Consensus       518 ~~~~~t~~~~~~~~--~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l-~~~~~V~~~~V~g~~~  594 (672)
                      ++. .+...|...+  ++++||+|||+|++|+||.++|+||.||+||+ +|++|+|.|||+++ ..||.|.+++|++.++
T Consensus       571 ~~~-~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~-~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d  648 (728)
T PLN03052        571 NAD-HYKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNL-GGIKVSSVEIERVCNAADESVLETAAIGVPP  648 (728)
T ss_pred             Cch-hhhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEee-CCEEeCHHHHHHHHHhcCCCcceEEEEeeec
Confidence            653 3333343222  24459999999999999999999999999997 59999999999999 5899999999999765


Q ss_pred             C----CeEEEEEEcC--hhHH--HHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874          595 H----SYCVALVVAS--QPAV--EEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD  666 (672)
Q Consensus       595 ~----~~~va~v~~~--~~~~--~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~  666 (672)
                      +    +.++++|+++  ++..  .+.........++++|+++++|+.|+++++.|      +|.+||++|+.|++.+.+.
T Consensus       649 ~~~g~e~~~afVvl~~~~g~~~~~~~L~~~i~~~i~~~l~~~~~p~~i~~v~~lP------~T~sGKi~Rr~Lr~~~~~~  722 (728)
T PLN03052        649 PGGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFP------RTASNKVMRRVLRQQLAQE  722 (728)
T ss_pred             CCCCcEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhhcCCccCCCEEEEcCCCC------CCCchHHHHHHHHHHHHhh
Confidence            4    4699999976  3211  11111111145678999999999999999988      9999999999999998765


Q ss_pred             H
Q 005874          667 L  667 (672)
Q Consensus       667 i  667 (672)
                      .
T Consensus       723 ~  723 (728)
T PLN03052        723 L  723 (728)
T ss_pred             h
Confidence            4

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=1.4e-61  Score=537.71  Aligned_cols=495  Identities=19%  Similarity=0.261  Sum_probs=398.1

Q ss_pred             CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874           57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI  136 (672)
Q Consensus        57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i  136 (672)
                      ..++.++|++.++  ||++|+.+            +++           .+||+||.+++.++|..|.+.|+++|++|++
T Consensus        24 ~~~~~~~~~~~a~--p~~~a~~~------------~~~-----------~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v   78 (536)
T PRK10946         24 DLPLTDILTRHAA--SDAIAVIC------------GER-----------QFSYRELNQASDNLACSLRRQGIKPGDTALV   78 (536)
T ss_pred             CccHHHHHHHhhC--CCCeEEEe------------CCC-----------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            4689999999887  99999986            333           6999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccch-----HHHHhhhcCCCCccEEEEecCC
Q 005874          137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL-----KKLVDLSGQLDTVKHVICMDAN  211 (672)
Q Consensus       137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~~~~~l~~ii~~~~~  211 (672)
                      +++|+++|+++++||+++|++++++.+.....++..++++++++.+++++...     ..........+.++.++..+..
T Consensus        79 ~~~n~~~~~~~~la~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  158 (536)
T PRK10946         79 QLGNVAEFYITFFALLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDD  158 (536)
T ss_pred             ECCChHHHHHHHHHHHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCC
Confidence            99999999999999999999888777777788899999999999999986531     1122223334555555554321


Q ss_pred             CcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCC
Q 005874          212 IPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGS  291 (672)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~  291 (672)
                      .              ...+.++...... ........++++++++|||||||.||||++||+++.+.+......+ .+++
T Consensus       159 ~--------------~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-~~~~  222 (536)
T PRK10946        159 G--------------EHSLDDAINHPAE-DFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-GFTP  222 (536)
T ss_pred             C--------------CccHHHHhhCccc-ccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhc-CCCC
Confidence            1              1123333332221 1223345678999999999999999999999999999988877777 8899


Q ss_pred             CcEEEEecChHhHHHHHH--HHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHH
Q 005874          292 KDVYLAYLPLAHVLELVA--ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVR  366 (672)
Q Consensus       292 ~d~~l~~~pl~h~~~~~~--~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~  366 (672)
                      +|++++.+|++|.+++..  .+.++..|+++++   .++..+.+.           ++++++|++.++|.++..+.+...
T Consensus       223 ~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------l~~~~~t~~~~~p~~~~~l~~~~~  291 (536)
T PRK10946        223 QTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPL-----------IEKHQVNVTALVPPAVSLWLQAIA  291 (536)
T ss_pred             CceEEEecCccccccchhhhHHHHhhcCcEEEECCCCCHHHHHHH-----------HHHhCCcEEEeChHHHHHHHhhhc
Confidence            999999999999988764  5678999999988   333334333           899999999999999998876432


Q ss_pred             HhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCC
Q 005874          367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGA  446 (672)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~  446 (672)
                      .....                                             ...+++|.+++||+++++++.+.+...+++
T Consensus       292 ~~~~~---------------------------------------------~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~  326 (536)
T PRK10946        292 EGGSR---------------------------------------------AQLASLKLLQVGGARLSETLARRIPAELGC  326 (536)
T ss_pred             ccCcc---------------------------------------------ccccceeEEEECCCCCCHHHHHHHHHhcCC
Confidence            11100                                             011389999999999999999999998999


Q ss_pred             ceecccCcccccccccccC-CCCCCCCccCCCc-CCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhh
Q 005874          447 PIGQGYGLTETCAGGTFSE-VDDSSVGRVGAPL-PCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK  524 (672)
Q Consensus       447 ~v~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~-~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~  524 (672)
                      ++++.||+||++....... ......+++|.|+ |+++++|+| ++++.+   +.|+.|||+++|+.++.||+++++.|.
T Consensus       327 ~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~v~i~d-~~~~~~---~~g~~Gel~v~g~~~~~GY~~~~~~t~  402 (536)
T PRK10946        327 QLQQVFGMAEGLVNYTRLDDSDERIFTTQGRPMSPDDEVWVAD-ADGNPL---PQGEVGRLMTRGPYTFRGYYKSPQHNA  402 (536)
T ss_pred             eEEEeecccccceeeecCCCccccccccCCcccCCCceEEEEC-CCCCCC---CCCCccEEEEecCccchhhcCCcccch
Confidence            9999999999754432221 1122357899998 799999999 666554   478999999999999999999999999


Q ss_pred             hhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEE
Q 005874          525 EVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVAL  601 (672)
Q Consensus       525 ~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~  601 (672)
                      +.|+    .+|||+|||+|++|+||.+++.||.+|+++. +|++|+|.+||++|.++|+|.+++|++.+++   +.++++
T Consensus       403 ~~~~----~d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~  477 (536)
T PRK10946        403 SAFD----ANGFYCSGDLVSIDPDGYITVVGREKDQINR-GGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAF  477 (536)
T ss_pred             hhcc----cCCceecCceEEECCCCcEEEeccccceeec-CCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEE
Confidence            9997    7899999999999999999999999999996 6999999999999999999999999998765   358888


Q ss_pred             EEcChhHHHHHHHHcChhhhhc-CCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHHH
Q 005874          602 VVASQPAVEEWAAKQGIVGKNA-RLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDL  667 (672)
Q Consensus       602 v~~~~~~~~~~~~~~~~~~~~~-~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i  667 (672)
                      +++++....+...    ..+.+ .|+.|++|..+.++++.|      +|++||++|++|++++++..
T Consensus       478 vv~~~~~~~~~l~----~~~~~~~l~~~~~P~~~~~~~~iP------~t~~GKv~r~~L~~~~~~~~  534 (536)
T PRK10946        478 LVVKEPLKAVQLR----RFLREQGIAEFKLPDRVECVDSLP------LTAVGKVDKKQLRQWLASRA  534 (536)
T ss_pred             EEeCCCCCHHHHH----HHHHhCCccccccCcEEEEeccCC------CCCCCcccHHHHHHHHHhhc
Confidence            8876542222111    34444 499999999999999887      99999999999999987654

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.7e-61  Score=540.19  Aligned_cols=509  Identities=25%  Similarity=0.359  Sum_probs=393.7

Q ss_pred             CCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhc-CCCCCCEE
Q 005874           56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQL-GHKKEERV  134 (672)
Q Consensus        56 ~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~-g~~~g~~V  134 (672)
                      ...++.++|++.++++|+++|+..            +++           .+||.||.++++++|..|.+. |+++||+|
T Consensus        22 ~~~~~~~~l~~~~~~~p~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V   78 (562)
T PRK12492         22 AYKSVVEVFERSCKKFADRPAFSN------------LGV-----------TLSYAELERHSAAFAAYLQQHTDLVPGDRI   78 (562)
T ss_pred             ccCcHHHHHHHHHHhCCCCeeEec------------CCc-----------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence            446899999999999999999975            343           799999999999999999985 99999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEec--CCC
Q 005874          135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMD--ANI  212 (672)
Q Consensus       135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~--~~~  212 (672)
                      +++++|+++|+++++||+++|++++|+++..+.+++.+++++++++++++++...+.+....... ....++...  +..
T Consensus        79 ~i~~~n~~e~~~~~la~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  157 (562)
T PRK12492         79 AVQMPNVLQYPIAVFGALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDT-GIEYLIEAKMGDLL  157 (562)
T ss_pred             EEECCCCHHHHHHHHHHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhcc-CceEEEeechhhcc
Confidence            99999999999999999999999999999999999999999999999999876655444432221 111111110  000


Q ss_pred             ccc--------cccc----ccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHH
Q 005874          213 PSA--------VSSV----EQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVS  280 (672)
Q Consensus       213 ~~~--------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~  280 (672)
                      ...        ....    ..........|+++...+......+.....+++++|+|||||||.||||+++|+|+.+.+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~  237 (562)
T PRK12492        158 PAAKGWLVNTVVDKVKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANML  237 (562)
T ss_pred             ccccchhcccccccccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHH
Confidence            000        0000    0000011235666654433222223345678999999999999999999999999988776


Q ss_pred             HHHhhcCC--------CCC-CcEEEEecChHhHHHHHH-HHHHhHhCcEEee-CCcccccCchhhhhcccccccccccce
Q 005874          281 AVMTIVPD--------LGS-KDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY-GTPLTLTDTSSKIKKGTQGDASVLRPT  349 (672)
Q Consensus       281 ~~~~~~~~--------~~~-~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~-~~~~~l~~~~~~~~~~~~~~i~~~k~t  349 (672)
                      .....+..        +.. ++++++.+|++|.+++.. .+..+..|...++ ..+...        ..++..++++++|
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~i~~~~~t  309 (562)
T PRK12492        238 QVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDI--------PGFIKELGKWRFS  309 (562)
T ss_pred             HHHHHHhcccccccccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCH--------HHHHHHHHHhCCc
Confidence            65554311        222 457899999999999866 4556788887665 222211        1122238999999


Q ss_pred             eeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcC
Q 005874          350 VMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGG  429 (672)
Q Consensus       350 ~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG  429 (672)
                      ++.++|.++..+......                                               .....+++|.+++||
T Consensus       310 ~~~~~p~~~~~l~~~~~~-----------------------------------------------~~~~~~~lr~~~~gG  342 (562)
T PRK12492        310 ALLGLNTLFVALMDHPGF-----------------------------------------------KDLDFSALKLTNSGG  342 (562)
T ss_pred             eeeCcHHHHHHHHhCcCc-----------------------------------------------ccccccceeEEEecc
Confidence            999999999887652110                                               001123899999999


Q ss_pred             CCCCHHHHHHHHHHhCCceecccCcccccccccccCCC-CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEc
Q 005874          430 APLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIA  508 (672)
Q Consensus       430 ~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~  508 (672)
                      +++++++.+.+...++++++++||+||++.+++..... ....+++|.|+++++++|+| +++..+   +.|+.|||+|+
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~~~~~---~~g~~Gel~v~  418 (562)
T PRK12492        343 TALVKATAERWEQLTGCTIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVID-DDGNEL---PLGERGELCIK  418 (562)
T ss_pred             ccCCHHHHHHHHHHhCCceeeccCccccCceeeecCCcccccCCccceecCCCEEEEEC-CCCCCC---CCCCceEEEEe
Confidence            99999999999998999999999999998766544332 22457899999999999999 666654   47889999999


Q ss_pred             cCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEE
Q 005874          509 GPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIM  588 (672)
Q Consensus       509 g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~  588 (672)
                      |+.++.|||++++.+.+.|.    .+|||+|||+|+++++|.+++.||++|+||. +|++|+|.+||+++.+||.|.+++
T Consensus       419 g~~~~~gY~~~~~~t~~~~~----~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~  493 (562)
T PRK12492        419 GPQVMKGYWQQPEATAEALD----AEGWFKTGDIAVIDPDGFVRIVDRKKDLIIV-SGFNVYPNEIEDVVMAHPKVANCA  493 (562)
T ss_pred             CCccccccccCchhhhhccc----CCCceecCcEEEECCCCeEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEE
Confidence            99999999999999999886    6799999999999999999999999999998 599999999999999999999999


Q ss_pred             EEecCCC---CeEEEEEEcChhHH-HHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHH
Q 005874          589 MHADPFH---SYCVALVVASQPAV-EEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKA  662 (672)
Q Consensus       589 V~g~~~~---~~~va~v~~~~~~~-~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~  662 (672)
                      |++.++.   +.+++++++.+... .+...    ..+.+.|+.|++|..+.++++.|      +|++||++|++|++.
T Consensus       494 v~~~~~~~~~~~~~~~v~~~~~~~~~~~i~----~~~~~~l~~~~~P~~i~~~~~~P------~t~~GK~~r~~L~~~  561 (562)
T PRK12492        494 AIGVPDERSGEAVKLFVVARDPGLSVEELK----AYCKENFTGYKVPKHIVLRDSLP------MTPVGKILRRELRDI  561 (562)
T ss_pred             EEeccCCCCCceEEEEEEeCCCCCCHHHHH----HHHHHhcccccCCcEEEEeccCC------CCCCCceeHHHHHhh
Confidence            9997654   35888887654321 11111    45668899999999999999987      999999999999864

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.9e-62  Score=535.38  Aligned_cols=486  Identities=24%  Similarity=0.296  Sum_probs=393.8

Q ss_pred             CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874           57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI  136 (672)
Q Consensus        57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i  136 (672)
                      +.++.++|++.++++|+++|+.+            +++           .+||.||.+++.++|.+|.+.|+++|++|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~a~~~------------~~~-----------~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i   57 (497)
T PRK06145          1 MFNLSASIAFHARRTPDRAALVY------------RDQ-----------EISYAEFHQRILQAAGMLHARGIGQGDVVAL   57 (497)
T ss_pred             CccHHHHHHHHHHHCCCceEEEE------------CCc-----------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            35789999999999999999986            444           6999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccc
Q 005874          137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV  216 (672)
Q Consensus       137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~  216 (672)
                      +++|+++++++++||+++|++++|+++..+.+.+.++++.++++.++++.+.......       ....+.++.....  
T Consensus        58 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~--  128 (497)
T PRK06145         58 LMKNSAAFLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL-------ETPKIVIDAAAQA--  128 (497)
T ss_pred             ECCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhhc-------ccceEEecCcccc--
Confidence            9999999999999999999999999999999999999999999999998765433210       0112222211100  


Q ss_pred             cccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEE
Q 005874          217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL  296 (672)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l  296 (672)
                                  ++..+.... ..........++++++++|||||||.||+|++||+|+...+......+ .+..+|+++
T Consensus       129 ------------~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~~~~~  194 (497)
T PRK06145        129 ------------DSRRLAQGG-LEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIAL-GLTASERLL  194 (497)
T ss_pred             ------------hhHHHhccC-CCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-CCCCCcEEE
Confidence                        011111111 111112345678999999999999999999999999987766555556 789999999


Q ss_pred             EecChHhHHHHHH-HHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhc
Q 005874          297 AYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAK  372 (672)
Q Consensus       297 ~~~pl~h~~~~~~-~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~  372 (672)
                      ..+|++|.+++.. .+.++..|+++++   +++..+.+.           ++++++|++.++|.++..++.......   
T Consensus       195 ~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~ll~~~~~~~---  260 (497)
T PRK06145        195 VVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAVLAA-----------IERHRLTCAWMAPVMLSRVLTVPDRDR---  260 (497)
T ss_pred             EecCchhHhHHHHHHHHHHhccCEEEECCcCCHHHHHHH-----------HHHhCCeEEEehHHHHHHHHcCCCccc---
Confidence            9999999998866 4677899999988   444444444           999999999999999988875311100   


Q ss_pred             CchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCceecc
Q 005874          373 GGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQG  451 (672)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~  451 (672)
                                                                  ...+++|.+++||+++++++.+.+.+.+ +.++++.
T Consensus       261 --------------------------------------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~  296 (497)
T PRK06145        261 --------------------------------------------FDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDA  296 (497)
T ss_pred             --------------------------------------------cccccceEEEecCCCCCHHHHHHHHHHcCCCceEEe
Confidence                                                        0113799999999999999999999887 6889999


Q ss_pred             cCcccccccccccCCC--CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhccc
Q 005874          452 YGLTETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV  529 (672)
Q Consensus       452 YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~  529 (672)
                      ||+||+++.++.....  ....+++|.|.++++++++| +++..+   +.+..|||+++|++++.||+++++.+++.|  
T Consensus       297 YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~---~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~--  370 (497)
T PRK06145        297 YGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-GAGRWL---PPNMKGEICMRGPKVTKGYWKDPEKTAEAF--  370 (497)
T ss_pred             ecCcccCCcceeccCccccccCCCcccCCCCceEEEEC-CCCCCC---CCCCceEEEEECcchhhhhcCChHHHHHHH--
Confidence            9999998765543322  22457899999999999999 666544   468899999999999999999999999998  


Q ss_pred             CCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcCh
Q 005874          530 DDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQ  606 (672)
Q Consensus       530 ~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~  606 (672)
                         .++||+|||+|++++||.++++||++|+||+ +|++++|.+||+++.++|+|.+++|++.+++   +.+++++++.+
T Consensus       371 ---~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  446 (497)
T PRK06145        371 ---YGDWFRSGDVGYLDEEGFLYLTDRKKDMIIS-GGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNP  446 (497)
T ss_pred             ---hCCCeeccceEEEcCCCcEEEeccccceEEe-CCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECC
Confidence               5789999999999999999999999999997 6999999999999999999999999997655   46889998865


Q ss_pred             hHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHH
Q 005874          607 PAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFA  664 (672)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~  664 (672)
                      ....+...  ....++++|+.+++|..+.++++.|      +|++||++|++|+++++
T Consensus       447 ~~~~~~~~--l~~~~~~~l~~~~~p~~i~~v~~iP------~t~~GKi~r~~l~~~~~  496 (497)
T PRK06145        447 GATLTLEA--LDRHCRQRLASFKVPRQLKVRDELP------RNPSGKVLKRVLRDELN  496 (497)
T ss_pred             CCCCCHHH--HHHHHHHhhhcCCCCCEEEEeccCC------CCCcccccHHHHHHHhc
Confidence            42211111  1155678899999999999999987      99999999999998654

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=2.6e-62  Score=598.38  Aligned_cols=488  Identities=21%  Similarity=0.259  Sum_probs=396.9

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF  137 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~  137 (672)
                      .++.++|++.++.+||++|+.+            ++.           .+||+||.++++++|+.|.+.|+++|++|+++
T Consensus       458 ~~l~~~~~~~~~~~p~~~Al~~------------~~~-----------~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~  514 (1296)
T PRK10252        458 TTLSALVAQQAAKTPDAPALAD------------ARY-----------QFSYREMREQVVALANLLRERGVKPGDSVAVA  514 (1296)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEc------------CCC-----------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            6899999999999999999986            333           69999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCccccc
Q 005874          138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS  217 (672)
Q Consensus       138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~  217 (672)
                      ++|+++++++++||+++|++++|+++.++.+++.++++.+++++++++.+....+...    +.+..             
T Consensus       515 ~~~~~~~i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~----~~~~~-------------  577 (1296)
T PRK10252        515 LPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV----PDLTS-------------  577 (1296)
T ss_pred             eCCCHHHHHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC----CCcee-------------
Confidence            9999999999999999999999999999999999999999999999998765443221    11111             


Q ss_pred             ccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEEE
Q 005874          218 SVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA  297 (672)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~  297 (672)
                                ..+.+.....  ...+.....++++++|+|||||||.||||+++|+++++.+.+....+ +++++|++++
T Consensus       578 ----------~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~  644 (1296)
T PRK10252        578 ----------LCYNAPLAPQ--GAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY-PLTADDVVLQ  644 (1296)
T ss_pred             ----------eecccccccc--cCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-CCCCCCEEEE
Confidence                      1111110000  01111233578999999999999999999999999999999888888 8999999999


Q ss_pred             ecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhH
Q 005874          298 YLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSK  377 (672)
Q Consensus       298 ~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~  377 (672)
                      .+|++|..++..++.+|..|+++++.++....+.     ..+...++++++|++.++|+++..+.+.......       
T Consensus       645 ~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~-----~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~-------  712 (1296)
T PRK10252        645 KTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDP-----LAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGA-------  712 (1296)
T ss_pred             eCCcchhhhHHHHHHHHhCCCEEEECChhccCCH-----HHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccc-------
Confidence            9999999999889999999999999443322211     1122238999999999999999888764211100       


Q ss_pred             HHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCcccc
Q 005874          378 KLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTET  457 (672)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~  457 (672)
                                                            ....+++|.+++||+++++++.+.|+..++++++|.||+||+
T Consensus       713 --------------------------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~  754 (1296)
T PRK10252        713 --------------------------------------RQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEA  754 (1296)
T ss_pred             --------------------------------------cccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchh
Confidence                                                  001137999999999999999999998889999999999999


Q ss_pred             cccccccCCCC-------CCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccC
Q 005874          458 CAGGTFSEVDD-------SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVD  530 (672)
Q Consensus       458 ~~~~~~~~~~~-------~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~  530 (672)
                      +..++......       ....++|.|+++++++|+| +++..+   +.|..|||+|+|+++++||+++|+.|++.|..+
T Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~---~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~  830 (1296)
T PRK10252        755 AVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILD-ARMRPV---PPGVAGDLYLTGIQLAQGYLGRPDLTASRFIAD  830 (1296)
T ss_pred             hheeeeeecccccccccCCCCCCcccccCCCEEEEEC-CCCCCC---CCCCceEEEecccccchhhCCCcccchhhcccC
Confidence            87666543322       2236799999999999999 666654   588999999999999999999999999999755


Q ss_pred             C--CCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEec---------CCCCeEE
Q 005874          531 D--KGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHAD---------PFHSYCV  599 (672)
Q Consensus       531 ~--~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~---------~~~~~~v  599 (672)
                      +  ++++||+|||+|++++||.++++||+|++||+ +|++|+|.+||++|.+||+|.+++|++.         .....++
T Consensus       831 ~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~-~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lv  909 (1296)
T PRK10252        831 PFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKI-RGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLV  909 (1296)
T ss_pred             CCCCCCEEEecCceEEEcCCCcEEEecccCCeEEE-eeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEE
Confidence            3  35679999999999999999999999999998 5999999999999999999999977653         1123699


Q ss_pred             EEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHH
Q 005874          600 ALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRK  661 (672)
Q Consensus       600 a~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~  661 (672)
                      ++|++..+...+....+  ..++++||.|++|..++.+++.|      +|++||++|++|++
T Consensus       910 a~v~~~~~~~~~~~~l~--~~l~~~Lp~~~~P~~~~~~~~lP------~t~~GKidr~~L~~  963 (1296)
T PRK10252        910 GYLVSQSGLPLDTSALQ--AQLRERLPPHMVPVVLLQLDQLP------LSANGKLDRKALPL  963 (1296)
T ss_pred             EEEEcCCCCCCCHHHHH--HHHHhhCchhcCCcEEEEecCCC------CCCCcChhHHhcCC
Confidence            99998754321111111  55678999999999999999887      99999999999865

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=1.6e-61  Score=585.71  Aligned_cols=506  Identities=26%  Similarity=0.340  Sum_probs=401.3

Q ss_pred             CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874           55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV  134 (672)
Q Consensus        55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V  134 (672)
                      +...++.++|++.++++||++|+...           +|+           .+||+|+.++++++|+.|.+ ++++||+|
T Consensus       612 ~~~~~l~~~~~~~a~~~p~~~a~~~~-----------~~~-----------~~Ty~el~~~~~~~a~~L~~-~~~~g~~V  668 (1146)
T PRK08633        612 EALPPLAEAWIDTAKRNWSRLAVADS-----------TGG-----------ELSYGKALTGALALARLLKR-ELKDEENV  668 (1146)
T ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEcC-----------CCC-----------cCcHHHHHHHHHHHHHHHHH-hCCCCCeE
Confidence            45688999999999999999999742           233           69999999999999999987 58999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhh--cCCCCccEEEEecCCC
Q 005874          135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLS--GQLDTVKHVICMDANI  212 (672)
Q Consensus       135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~--~~~~~l~~ii~~~~~~  212 (672)
                      +++++|+++++++++||+++|++++|+++..+++++.+++++++++.++++++..+.+.+..  ...+....++..++..
T Consensus       669 ~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  748 (1146)
T PRK08633        669 GILLPPSVAGALANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLK  748 (1146)
T ss_pred             EEECCCchHHHHHHHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhc
Confidence            99999999999999999999999999999999999999999999999999987666554311  1122333444443311


Q ss_pred             cccccccccCCCeEEEeHHHHHhcccCC-----CCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcC
Q 005874          213 PSAVSSVEQSGRWKITSFADVQILGREN-----PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP  287 (672)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~  287 (672)
                      ...         .....+.+........     ........+||+++++|||||||.||||++||+++++.+......+ 
T Consensus       749 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-  818 (1146)
T PRK08633        749 AKI---------SKVDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-  818 (1146)
T ss_pred             ccc---------chhHHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhc-
Confidence            100         0000111111110000     0001345679999999999999999999999999999988887777 


Q ss_pred             CCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEee-C---CcccccCchhhhhcccccccccccceeeecchHHHHHHH
Q 005874          288 DLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY-G---TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVR  362 (672)
Q Consensus       288 ~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~-~---~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~  362 (672)
                      +++++|++++.+|++|.+++.. .+.++..|+++++ .   ++..+.+.           ++++++|++.++|.+++.+.
T Consensus       819 ~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~  887 (1146)
T PRK08633        819 NLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKL-----------VAKHRATILLGTPTFLRLYL  887 (1146)
T ss_pred             CCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHH-----------HHHcCCeEEEecHHHHHHHH
Confidence            8899999999999999999877 6778999999988 2   33344444           99999999999999998876


Q ss_pred             HHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHH
Q 005874          363 DGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINI  442 (672)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~  442 (672)
                      +....                                               .+...+++|.+++||+++++++.+.+++
T Consensus       888 ~~~~~-----------------------------------------------~~~~~~~lr~~~~gg~~~~~~~~~~~~~  920 (1146)
T PRK08633        888 RNKKL-----------------------------------------------HPLMFASLRLVVAGAEKLKPEVADAFEE  920 (1146)
T ss_pred             hcccc-----------------------------------------------CcccCCCeeeEEEcCCcCCHHHHHHHHH
Confidence            52110                                               0111248999999999999999999999


Q ss_pred             HhCCceecccCcccccccccccCCC----------CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcc
Q 005874          443 CLGAPIGQGYGLTETCAGGTFSEVD----------DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNV  512 (672)
Q Consensus       443 ~~~~~v~~~YG~TE~~~~~~~~~~~----------~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v  512 (672)
                      .+++++++.||+||+++.++....+          ....+++|.|.|+++++|+|+++++.+   ++|+.|||+++|+++
T Consensus       921 ~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~---~~g~~Gel~v~g~~~  997 (1146)
T PRK08633        921 KFGIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEEL---PPGEDGLILIGGPQV  997 (1146)
T ss_pred             HhCCCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccC---CCCCceEEEEcCCCc
Confidence            9999999999999998766544321          124578999999999999995555554   578999999999999


Q ss_pred             cccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCc--ccceEEEE
Q 005874          513 TVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSP--YVDNIMMH  590 (672)
Q Consensus       513 ~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~--~V~~~~V~  590 (672)
                      +.||+++|+.|++.+.. .+++|||+|||+|++|+||.+++.||.||+||+ +|++|+|.+||+++.+||  .+.+++|+
T Consensus       998 ~~gY~~~~~~t~~~~~~-~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~~~~~~~~v~ 1075 (1146)
T PRK08633        998 MKGYLGDPEKTAEVIKD-IDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKI-GGEMVPLGAVEEELAKALGGEEVVFAVT 1075 (1146)
T ss_pred             cccccCCccchHHHhhc-CCCCCeEECCCEEEEcCCceEEEEecccchhhh-CcEEECHHHHHHHHHhccCCCCceEEEE
Confidence            99999999999988852 235699999999999999999999999999997 699999999999999999  46689999


Q ss_pred             ecCCC---CeEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874          591 ADPFH---SYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD  666 (672)
Q Consensus       591 g~~~~---~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~  666 (672)
                      +.+++   +.+++++++......+..+    ...++.++.|++|..++++++.|      +|++||++|++|++..++.
T Consensus      1076 ~~~~~~~g~~~~~~v~~~~~~~~~l~~----~~~~~~l~~~~~P~~i~~~~~iP------~t~~GKi~r~~L~~~~~~~ 1144 (1146)
T PRK08633       1076 AVPDEKKGEKLVVLHTCGAEDVEELKR----AIKESGLPNLWKPSRYFKVEALP------LLGSGKLDLKGLKELALAL 1144 (1146)
T ss_pred             eccCCCCCcEEEEEEecCccCHHHHHH----HHHhcCCCcccCCcEEEEecCcC------CCCCCCCcHHHHHHHHHHh
Confidence            97765   3588888864322222111    22235799999999999999988      9999999999999887654

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-61  Score=531.91  Aligned_cols=471  Identities=23%  Similarity=0.314  Sum_probs=376.8

Q ss_pred             HHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH
Q 005874           65 EQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEW  144 (672)
Q Consensus        65 ~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e~  144 (672)
                      +.++..+||++|+....          ++.           .+||.|+.++++++|.+|.+.|+++|++|+++++|+++|
T Consensus         2 ~~~a~~~p~~~a~~~~~----------~~~-----------~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~   60 (488)
T PRK09088          2 AFHARLQPQRLAAVDLA----------LGR-----------RWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWL   60 (488)
T ss_pred             chhhhhCCCceEEEecC----------CCc-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence            35667899999987521          333           699999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccccccccCCC
Q 005874          145 FVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGR  224 (672)
Q Consensus       145 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~  224 (672)
                      ++++|||+++|++++|+++..+.+.+.+++++++++.+|+++......      .                         
T Consensus        61 ~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~------~-------------------------  109 (488)
T PRK09088         61 VALHFACARVGAIYVPLNWRLSASELDALLQDAEPRLLLGDDAVAAGR------T-------------------------  109 (488)
T ss_pred             HHHHHHHHHcCeEEEeeCccCCHHHHHHHHHhCCCCEEEEcchhhccc------c-------------------------
Confidence            999999999999999999999999999999999999999986533200      0                         


Q ss_pred             eEEEeHHHHHhcccC-CCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEEEecChHh
Q 005874          225 WKITSFADVQILGRE-NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAH  303 (672)
Q Consensus       225 ~~~~~~~~~~~~~~~-~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h  303 (672)
                       ....++++...... .........++++++++|||||||.||+|.+||+++...+..+...+ .+..+|++++.+|++|
T Consensus       110 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~~  187 (488)
T PRK09088        110 -DVEDLAAFIASADALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLG-RVDAHSSFLCDAPMFH  187 (488)
T ss_pred             -cccchhhhhhhccccccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCcEEEEecchHH
Confidence             00111122111111 01112233567899999999999999999999999998877776666 7889999999999999


Q ss_pred             HHHHHH-HHHHhHhCcEEeeCC---cccccCchhhhhcccccccc--cccceeeecchHHHHHHHHHHHHhhhhcCchhH
Q 005874          304 VLELVA-ENLIAGVGSAIGYGT---PLTLTDTSSKIKKGTQGDAS--VLRPTVMASVPAILDRVRDGVRKKVDAKGGLSK  377 (672)
Q Consensus       304 ~~~~~~-~~~~l~~G~~i~~~~---~~~l~~~~~~~~~~~~~~i~--~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~  377 (672)
                      ++++.. .+.++..|+++++.+   +......           +.  ++++|+++++|.++..+.+.....         
T Consensus       188 ~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------~~~~~~~~t~~~~~P~~~~~l~~~~~~~---------  247 (488)
T PRK09088        188 IIGLITSVRPVLAVGGSILVSNGFEPKRTLGR-----------LGDPALGITHYFCVPQMAQAFRAQPGFD---------  247 (488)
T ss_pred             HHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHH-----------HHhhccCCcEEeeHHHHHHHHHhCcCcC---------
Confidence            999877 556788899998833   3222222           43  588999999999998876521000         


Q ss_pred             HHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCcccc
Q 005874          378 KLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTET  457 (672)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~  457 (672)
                                                            ....+++|.+++||++++....+.+... ++++++.||+||+
T Consensus       248 --------------------------------------~~~~~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~  288 (488)
T PRK09088        248 --------------------------------------AAALRHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEA  288 (488)
T ss_pred             --------------------------------------ccccccceEEEecCCCCCHHHHHHHHHh-CCceeeeeccccc
Confidence                                                  0011379999999999999988877764 8999999999999


Q ss_pred             cccccccCC---CCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCC
Q 005874          458 CAGGTFSEV---DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGM  534 (672)
Q Consensus       458 ~~~~~~~~~---~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~  534 (672)
                      +........   ...+.+++|.|.|+++++|+| +++..+   +.|..|||+++|++++.||+++++.+++.|+    .+
T Consensus       289 ~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~---~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~----~~  360 (488)
T PRK09088        289 GTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVD-DQGNDC---PAGVPGELLLRGPNLSPGYWRRPQATARAFT----GD  360 (488)
T ss_pred             ccccccCCCcccccccCCccccCCCCcEEEEEC-CCCCCC---cCCCceEEEEECCccchhhcCChhhhhhhhc----CC
Confidence            865433211   123457899999999999999 666544   4788999999999999999999999998887    78


Q ss_pred             ceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcChhHHHH
Q 005874          535 RWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQPAVEE  611 (672)
Q Consensus       535 gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~~~~~~  611 (672)
                      |||+|||+|+++++|.+++.||++|+|+. +|++|+|.+||++|..+|.|.+++|++.+++   +..+++|+++++...+
T Consensus       361 g~~~TGDl~~~~~~g~l~i~GR~~d~i~~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~  439 (488)
T PRK09088        361 GWFRTGDIARRDADGFFWVVDRKKDMFIS-GGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLD  439 (488)
T ss_pred             CCeeecceEEEcCCCcEEEeccccceEEe-CCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCCCC
Confidence            99999999999999999999999999997 6999999999999999999999999997654   4578888876543211


Q ss_pred             HHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874          612 WAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       612 ~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                      ...  ..+.+++.|+.|++|..+.+++..|      +|++||++|++|++++.+
T Consensus       440 ~~~--l~~~~~~~l~~~~~p~~i~~~~~iP------~t~~gKi~r~~l~~~~~~  485 (488)
T PRK09088        440 LER--IRSHLSTRLAKYKVPKHLRLVDALP------RTASGKLQKARLRDALAA  485 (488)
T ss_pred             HHH--HHHHHHhhCcCCCCCCEEEEcccCC------CCCCCceeHHHHHHHHHh
Confidence            111  1156678899999999999999887      999999999999998865

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=9.6e-62  Score=546.45  Aligned_cols=501  Identities=22%  Similarity=0.264  Sum_probs=386.8

Q ss_pred             CCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 005874           56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA  135 (672)
Q Consensus        56 ~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~  135 (672)
                      ...|+.++|.+.++++|+++|+.+            +++           .+||+||.++++++|.+|.+.|+++|++|+
T Consensus        35 ~~~tl~~~l~~~a~~~p~~~Ai~~------------~~~-----------~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~   91 (600)
T PRK08279         35 SKRSLGDVFEEAAARHPDRPALLF------------EDQ-----------SISYAELNARANRYAHWAAARGVGKGDVVA   91 (600)
T ss_pred             CcccHHHHHHHHHHhCCCCcEEEe------------CCC-----------cccHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence            457899999999999999999986            333           699999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCccc
Q 005874          136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSA  215 (672)
Q Consensus       136 i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~  215 (672)
                      ++++|+.+++++++||+++|++++|+++.++.+++.++++.++++++|++.+..+.+.+..........++..++.... 
T Consensus        92 i~~~n~~~~v~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  170 (600)
T PRK08279         92 LLMENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLD-  170 (600)
T ss_pred             EECCCCHHHHHHHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCcccc-
Confidence            9999999999999999999999999999999999999999999999999998887776665444443333333221100 


Q ss_pred             ccccccCCCeEEEeHHHHHhcccCCC----CCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCC
Q 005874          216 VSSVEQSGRWKITSFADVQILGRENP----VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGS  291 (672)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~  291 (672)
                                ....+.++.......+    .......++++++|+|||||||.||||++||+++++.+..+...+ .+++
T Consensus       171 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~l~~  239 (600)
T PRK08279        171 ----------DPEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-RLTP  239 (600)
T ss_pred             ----------ccccHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhc-CCCC
Confidence                      0122334433222111    112334568999999999999999999999999999998888777 8999


Q ss_pred             CcEEEEecChHhHHHHHHHH-HHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHH
Q 005874          292 KDVYLAYLPLAHVLELVAEN-LIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRK  367 (672)
Q Consensus       292 ~d~~l~~~pl~h~~~~~~~~-~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~  367 (672)
                      +|++++.+|++|.+++...+ .++..|+++++   +++..+++.           ++++++|++.++|.++..+......
T Consensus       240 ~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~l~~~l~~~~~~  308 (600)
T PRK08279        240 DDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDD-----------VRRYRATAFQYIGELCRYLLNQPPK  308 (600)
T ss_pred             CcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHH-----------HHHhcceEEeehHHHHHHHHhCCCC
Confidence            99999999999999988744 56888888888   344444444           8999999999999999887652111


Q ss_pred             hhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCC-
Q 005874          368 KVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGA-  446 (672)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-  446 (672)
                      ...                                               ...++|.+  +|+++++++.+.+...++. 
T Consensus       309 ~~~-----------------------------------------------~~~~l~~~--~g~~l~~~~~~~~~~~~~~~  339 (600)
T PRK08279        309 PTD-----------------------------------------------RDHRLRLM--IGNGLRPDIWDEFQQRFGIP  339 (600)
T ss_pred             ccc-----------------------------------------------cCcceeEE--ecCCCCHHHHHHHHHHhCcc
Confidence            000                                               01256654  4778999999999998876 


Q ss_pred             ceecccCcccccccccccCCCCCCCCccCCCcC----CeEEE---------EEecCCCCcccCCCCCCccEEE--EccCc
Q 005874          447 PIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLP----CSFIK---------LIDWPEGGYLTSDSPMPRGEIV--IAGPN  511 (672)
Q Consensus       447 ~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~----~~~v~---------i~d~~~~~~~~~~~~g~~GEi~--v~g~~  511 (672)
                      .+++.||+||++...+.   .....+++|.+.+    +..+.         +.+ .++. ...+++|+.|||+  ++|++
T Consensus       340 ~l~~~YG~tE~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~-~~~~~~g~~Gel~~~i~~~~  414 (600)
T PRK08279        340 RILEFYAASEGNVGFIN---VFNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRD-ADGR-CIKVKPGEVGLLIGRITDRG  414 (600)
T ss_pred             eeeeeecccccceeecc---cCCCCcccccccccccccceeeeeccCcCceeeC-CCCc-cccCCCCCceeEEEEecCcc
Confidence            59999999998753322   1234467777665    33332         223 1221 1124678899998  78999


Q ss_pred             ccccccCCchhhhhhcccC--CCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEE
Q 005874          512 VTVGYFKNEEKTKEVYKVD--DKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMM  589 (672)
Q Consensus       512 v~~gY~~~~~~t~~~~~~~--~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V  589 (672)
                      ++.|| ++++.|.+.|..+  .++++||+|||+|++++||.|++.||.||+||+ +|++|+|.+||+++.+||+|.+|+|
T Consensus       415 ~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~-~G~~i~p~eIE~~l~~~p~V~~a~v  492 (600)
T PRK08279        415 PFDGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRW-KGENVATTEVENALSGFPGVEEAVV  492 (600)
T ss_pred             ccccc-CCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEE-CCcccCHHHHHHHHhcCCCcceEEE
Confidence            99999 8999888877533  235789999999999999999999999999998 6999999999999999999999999


Q ss_pred             EecCCC----CeEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874          590 HADPFH----SYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       590 ~g~~~~----~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                      ++.+.+    ...+++++..++...+...  ....++++|+.|++|+.|+++++.|      +|++||++|++|++++.+
T Consensus       493 ~gv~~~~~~~~~~~~~vv~~~~~~~~~~~--l~~~l~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~  564 (600)
T PRK08279        493 YGVEVPGTDGRAGMAAIVLADGAEFDLAA--LAAHLYERLPAYAVPLFVRLVPELE------TTGTFKYRKVDLRKEGFD  564 (600)
T ss_pred             EEeecCCCCCccceeEEEecCCccCCHHH--HHHHHHhhCccccCCeEEEeecCCC------CCcchhhhHHHHhhcCCC
Confidence            986532    2344555444221111111  1166778999999999999999987      999999999999988765


Q ss_pred             H
Q 005874          666 D  666 (672)
Q Consensus       666 ~  666 (672)
                      .
T Consensus       565 ~  565 (600)
T PRK08279        565 P  565 (600)
T ss_pred             c
Confidence            4

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9.7e-61  Score=529.16  Aligned_cols=482  Identities=21%  Similarity=0.237  Sum_probs=381.6

Q ss_pred             CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhc-CCCCCCE
Q 005874           55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQL-GHKKEER  133 (672)
Q Consensus        55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~-g~~~g~~  133 (672)
                      +...++.++|.+.+.  ++++|+.+            +++           ++||.|+.+++.++|++|.++ |++++++
T Consensus         2 ~~~~~~~~~l~~~a~--~~~~a~~~------------~~~-----------~~Ty~el~~~v~~lA~~L~~~~~~~~~~~   56 (529)
T PRK07867          2 SSAPTVAELLLPLAE--DDDRGLYF------------EDS-----------FTSWREHIRGSAARAAALRARLDPTRPPH   56 (529)
T ss_pred             CccccHHHHHHHhcc--cCCceEEE------------CCc-----------EEeHHHHHHHHHHHHHHHHHhhCCCCCCE
Confidence            344689999988774  78999876            444           799999999999999999997 8999999


Q ss_pred             EEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCc
Q 005874          134 VAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIP  213 (672)
Q Consensus       134 V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~  213 (672)
                      |+++++|+++|+++++||+++|++++|+++..+.+++.++++.++++++|++++....+....   +.+.. +..+.   
T Consensus        57 V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~---~~~~~-~~~~~---  129 (529)
T PRK07867         57 VGVLLDNTPEFSLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD---PGVRV-INVDS---  129 (529)
T ss_pred             EEEECCCCHHHHHHHHHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc---cCceE-EEecc---
Confidence            999999999999999999999999999999999999999999999999999988776554432   22221 11111   


Q ss_pred             ccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCc
Q 005874          214 SAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKD  293 (672)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d  293 (672)
                                    ..+.++...............++++++++|||||||.||||++||+++......+...+ +++.+|
T Consensus       130 --------------~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-~~~~~d  194 (529)
T PRK07867        130 --------------PAWADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF-GLGPDD  194 (529)
T ss_pred             --------------ccHHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh-CCCccc
Confidence                          01333332221112223345678999999999999999999999999998888887777 889999


Q ss_pred             EEEEecChHhHHHHHH-HHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhh
Q 005874          294 VYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKV  369 (672)
Q Consensus       294 ~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~  369 (672)
                      ++++.+|++|.+++.. .+.++..|+++++   +++..+.+.           ++++++|++.++|..+..++...... 
T Consensus       195 ~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~p~~~~~ll~~~~~~-  262 (529)
T PRK07867        195 VCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASGFLPD-----------VRRYGATYANYVGKPLSYVLATPERP-  262 (529)
T ss_pred             EEEEecchhHHHHHHHHHHHHHhcCceEEecCCCCHHHHHHH-----------HHHhCCeEEeccHHHHHHHHhCCCcc-
Confidence            9999999999999876 4567999999988   445555554           89999999999999988776421100 


Q ss_pred             hhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCcee
Q 005874          370 DAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIG  449 (672)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~  449 (672)
                         .                                           ...+++|. ++||+++++.. ..+...+|++++
T Consensus       263 ---~-------------------------------------------~~~~~lr~-~~gg~~~~~~~-~~~~~~~g~~l~  294 (529)
T PRK07867        263 ---D-------------------------------------------DADNPLRI-VYGNEGAPGDI-ARFARRFGCVVV  294 (529)
T ss_pred             ---c-------------------------------------------ccccceEE-EecCCCChHHH-HHHHHHhCCcEE
Confidence               0                                           00126774 56888888775 556667799999


Q ss_pred             cccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCC------------ccEEEE-ccCcccccc
Q 005874          450 QGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMP------------RGEIVI-AGPNVTVGY  516 (672)
Q Consensus       450 ~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~------------~GEi~v-~g~~v~~gY  516 (672)
                      +.||+||++...+...  ....+++|.|.++  ++++|.+.+..+   +.+.            .|||++ +|++++.||
T Consensus       295 ~~YG~TE~~~~~~~~~--~~~~~~~g~~~~~--~~i~~~~~~~~~---~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy  367 (529)
T PRK07867        295 DGFGSTEGGVAITRTP--DTPPGALGPLPPG--VAIVDPDTGTEC---PPAEDADGRLLNADEAIGELVNTAGPGGFEGY  367 (529)
T ss_pred             EeecccccccccccCC--CCCCCCcCCCCCC--EEEEECCCCCCC---CCCccccccccccCCcceEEEEecCCcccccc
Confidence            9999999976544322  2345789999998  778884444433   3455            899999 999999999


Q ss_pred             cCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC-
Q 005874          517 FKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH-  595 (672)
Q Consensus       517 ~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~-  595 (672)
                      +++++.+.+.|     .+|||+|||+|+++++|.+++.||+||+|++ +|++|+|.+||+++.+||+|.+|+|++.+++ 
T Consensus       368 ~~~~~~~~~~~-----~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~  441 (529)
T PRK07867        368 YNDPEADAERM-----RGGVYWSGDLAYRDADGYAYFAGRLGDWMRV-DGENLGTAPIERILLRYPDATEVAVYAVPDPV  441 (529)
T ss_pred             cCChHhhhhhh-----cCCeEeeccEEEEeCCCcEEEeccccCeEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCCC
Confidence            99999998888     6799999999999999999999999999998 6999999999999999999999999998765 


Q ss_pred             --CeEEEEEEcChhHHHHHHHHcChhhhh--cCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHH
Q 005874          596 --SYCVALVVASQPAVEEWAAKQGIVGKN--ARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFA  664 (672)
Q Consensus       596 --~~~va~v~~~~~~~~~~~~~~~~~~~~--~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~  664 (672)
                        +.++++++..++...+.....  ..+.  ..|+.+++|..+.++++.|      +|++||++|++|+++..
T Consensus       442 ~g~~~~a~vv~~~~~~~~~~~l~--~~~~~~~~l~~~~~P~~i~~~~~iP------~t~~GKv~r~~L~~~~~  506 (529)
T PRK07867        442 VGDQVMAALVLAPGAKFDPDAFA--EFLAAQPDLGPKQWPSYVRVCAELP------RTATFKVLKRQLSAEGV  506 (529)
T ss_pred             CCeeEEEEEEECCCCCCCHHHHH--HHHHhhccCCcccCCeEEEEeeccC------CCCCcceeHHHHHHhcC
Confidence              368888887655221111111  2222  3599999999999999987      99999999999998764

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=1e-60  Score=528.04  Aligned_cols=494  Identities=23%  Similarity=0.295  Sum_probs=403.6

Q ss_pred             CCCHHHHHHHH-HHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 005874           57 ISTLAELFEQS-CKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA  135 (672)
Q Consensus        57 ~~tl~~~~~~~-a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~  135 (672)
                      .++..+++.+. ++.+||++|+..            ++.           .+||.|+.++++++|..|.+.|+++|++|+
T Consensus         3 ~~~~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~   59 (508)
T TIGR02262         3 YNAAEDLLDRNVVEGRGGKTAFID------------DIS-----------SLSYGELEAQVRRLGAALRRLGVKREERVL   59 (508)
T ss_pred             chHHHHHHHHHHhcccCCceEEEe------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            35677888776 677999999975            333           699999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCccc
Q 005874          136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSA  215 (672)
Q Consensus       136 i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~  215 (672)
                      ++++|+.+|+++++||+++|++++|+++..+.+.+.++++.++++.+|+++...+.+.+....++.++.++..+....  
T Consensus        60 l~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  137 (508)
T TIGR02262        60 LLMLDGVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEA--  137 (508)
T ss_pred             EECCCCHHHHHHHHHHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCCc--
Confidence            999999999999999999999999999999999999999999999999999888877777666777777776544211  


Q ss_pred             ccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHH-HHhhcCCCCCCcE
Q 005874          216 VSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA-VMTIVPDLGSKDV  294 (672)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~~d~  294 (672)
                                ....+.++...... ...+....++++++++|||||||.||||++||+++...+.. ....+ +++.+|+
T Consensus       138 ----------~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~-~~~~~d~  205 (508)
T TIGR02262       138 ----------GEVQLAELLATESE-QFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL-GIREDDV  205 (508)
T ss_pred             ----------ccccHHHHhhcCCC-ccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhc-CCCCCCE
Confidence                      11234444332221 11223455789999999999999999999999999987766 33445 8899999


Q ss_pred             EEEecChHhHHHHHH-HHHHhHhCcEEeeC----CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhh
Q 005874          295 YLAYLPLAHVLELVA-ENLIAGVGSAIGYG----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKV  369 (672)
Q Consensus       295 ~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~----~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~  369 (672)
                      +++.+|++|.+++.. .+.++..|+++++.    ++..+++.           +++++||.++++|.++..+......  
T Consensus       206 ~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~~~~~~~~--  272 (508)
T TIGR02262       206 VFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDR-----------LRRHQPTIFYGVPTLYAAMLADPNL--  272 (508)
T ss_pred             EEEcCchHHHHHHHHHHHHHHHcCceEEEeCCCCCHHHHHHH-----------HHHHCCcEEecchHHHHHHhcCccc--
Confidence            999999999999866 55679999999883    33344444           9999999999999988776542100  


Q ss_pred             hhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCcee
Q 005874          370 DAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIG  449 (672)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~  449 (672)
                                                                   +...+.++|.+++||+++++++.+.|++.++++++
T Consensus       273 ---------------------------------------------~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~  307 (508)
T TIGR02262       273 ---------------------------------------------PAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIV  307 (508)
T ss_pred             ---------------------------------------------cccccccceeEEEcCCCCCHHHHHHHHHHhCCchh
Confidence                                                         00112379999999999999999999999999999


Q ss_pred             cccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhccc
Q 005874          450 QGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV  529 (672)
Q Consensus       450 ~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~  529 (672)
                      +.||+||++..++.....+...+++|.|.++++++|+| +++..+   +.|..|||+++|++++.||+++++.+++.|  
T Consensus       308 ~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d-~~~~~~---~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~--  381 (508)
T TIGR02262       308 DGIGSTEMLHIFLSNLPGDVRYGTSGKPVPGYRLRLVG-DGGQDV---AAGEPGELLISGPSSATMYWNNRAKTRDTF--  381 (508)
T ss_pred             hCccccccCceeecCCccCCCCCCcCCCCCCcEEEEEC-CCCCCC---CCCCeeEEEEecCccccccCCCHHHhHhhh--
Confidence            99999999876655444444567899999999999999 666654   478899999999999999999999999888  


Q ss_pred             CCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcCh
Q 005874          530 DDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQ  606 (672)
Q Consensus       530 ~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~  606 (672)
                         .++||+|||+|+++++|.++++||.+|++++ +|++|+|.+||+.+.++++|.++++++.++.   ..+++++++.+
T Consensus       382 ---~~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~-~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~  457 (508)
T TIGR02262       382 ---QGEWTRSGDKYVRNDDGSYTYAGRTDDMLKV-SGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRP  457 (508)
T ss_pred             ---hcCceeccceEEEcCCccEEEeccccceeee-CCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCC
Confidence               5789999999999999999999999999998 4999999999999999999999999996543   35788888765


Q ss_pred             hHHH-HHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHH
Q 005874          607 PAVE-EWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRK  661 (672)
Q Consensus       607 ~~~~-~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~  661 (672)
                      .... +.........++++|+.++.|..++++++.|      +|++||++|++|++
T Consensus       458 ~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~~~~iP------~t~~gKi~r~~l~~  507 (508)
T TIGR02262       458 GQDIDTALETELKEHVKDRLAPYKYPRWIVFVDDLP------KTATGKIQRFKLRE  507 (508)
T ss_pred             CCccccccHHHHHHHHHHhcccCCCCceEEEecCCC------CCCCCcEehhhccC
Confidence            4321 0011111155678899999999999998887      99999999999875

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=6.9e-62  Score=538.48  Aligned_cols=481  Identities=21%  Similarity=0.267  Sum_probs=357.6

Q ss_pred             HHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcC
Q 005874           60 LAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFAD  139 (672)
Q Consensus        60 l~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~  139 (672)
                      +.+.|+++++++|+++|+...           ++        +.++++||+||.++++++|..|.++  ++|++|+|+++
T Consensus         4 ~~~~l~~~~~~~~~~~a~~~~-----------~~--------~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~   62 (525)
T PRK05851          4 LAAALSDAMTASGRDLVVLDR-----------ES--------GLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGE   62 (525)
T ss_pred             HHHHHHHHhcCCCCceEEeCC-----------CC--------CcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcC
Confidence            889999999999999999863           22        2467899999999999999999988  79999999999


Q ss_pred             CCHHHHHHHHHHHhCCcEEEecCCC--------CCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCC
Q 005874          140 TRAEWFVALQGCFRRNVTVVTIYAS--------LGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDAN  211 (672)
Q Consensus       140 ns~e~~~~~lA~~~~G~~~vpl~~~--------~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~  211 (672)
                      |++++++++|||+++|++++ +++.        ...+++.+++++++++++|+++.....+......       +.+.+ 
T Consensus        63 ~~~e~~~~~la~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~-------~~~~~-  133 (525)
T PRK05851         63 PTVELVAAIQGAWLAGAAVS-ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSS-------VTVHD-  133 (525)
T ss_pred             CCHHHHHHHHHHHHcCCCCc-CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcc-------ccccc-
Confidence            99999999999999999865 3332        1234566788999999999998765544432111       00000 


Q ss_pred             CcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCC-
Q 005874          212 IPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG-  290 (672)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~-  290 (672)
                                        +........  ..+.....++++++|+|||||||.||||++||+++++.+..+...+ ++. 
T Consensus       134 ------------------~~~~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-~~~~  192 (525)
T PRK05851        134 ------------------LATAAHTNR--SASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARV-GLDA  192 (525)
T ss_pred             ------------------ccccccccc--cccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-CCCC
Confidence                              000000000  0011224678999999999999999999999999999988888777 787 


Q ss_pred             CCcEEEEecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhh
Q 005874          291 SKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD  370 (672)
Q Consensus       291 ~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~  370 (672)
                      ++|++++++|++|.+++...+.++..|+++++.+...+..+    +..+...++++++|++..+|.++..+.... ... 
T Consensus       193 ~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~----~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~-~~~-  266 (525)
T PRK05851        193 ATDVGCSWLPLYHDMGLAFLLTAALAGAPLWLAPTTAFSAS----PFRWLSWLSDSRATLTAAPNFAYNLIGKYA-RRV-  266 (525)
T ss_pred             CCCeEEEcCCCccCccHHHHHHHHHcCCeEEEcCHHHHHHC----HHHHHHHHHHhCCeEEeCCcHHHHHHHHhh-ccc-
Confidence            89999999999999999888889999999998432111111    011122288999998765554444432211 000 


Q ss_pred             hcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHH---hCC-
Q 005874          371 AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC---LGA-  446 (672)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~---~~~-  446 (672)
                                                                  .....++||.+++||+++++++.+.|.+.   +|. 
T Consensus       267 --------------------------------------------~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~  302 (525)
T PRK05851        267 --------------------------------------------SDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFD  302 (525)
T ss_pred             --------------------------------------------cCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCC
Confidence                                                        00111379999999999999999888764   354 


Q ss_pred             --ceecccCcccccccccccCCC---------------CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEcc
Q 005874          447 --PIGQGYGLTETCAGGTFSEVD---------------DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAG  509 (672)
Q Consensus       447 --~v~~~YG~TE~~~~~~~~~~~---------------~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g  509 (672)
                        .+++.||+||++..++.....               ....+++|.|+++++++|+| +++...  ++.|+.|||+++|
T Consensus       303 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~~--~~~g~~GEl~v~g  379 (525)
T PRK05851        303 AGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISP-GDGAAG--VAGREIGEIEIRG  379 (525)
T ss_pred             hhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEEC-CCCCcc--CCCCCeEEEEEec
Confidence              499999999997655443211               11236799999999999999 444321  3578899999999


Q ss_pred             CcccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEE
Q 005874          510 PNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMM  589 (672)
Q Consensus       510 ~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V  589 (672)
                      ++++.||+++++.+         .+|||+|||+|+++ +|.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|
T Consensus       380 ~~~~~GY~~~~~~~---------~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v  448 (525)
T PRK05851        380 ASMMSGYLGQAPID---------PDDWFPTGDLGYLV-DGGLVVCGRAKELITV-AGRNIFPTEIERVAAQVRGVREGAV  448 (525)
T ss_pred             CchhhccccCCccC---------CCCceeccceEEEE-CCEEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCcccceE
Confidence            99999999998642         56899999999997 8999999999999998 6999999999999999999999999


Q ss_pred             EecCCCC---eEEEEEEcC-hhHHHHHHHHcChhhhhcCCCCC--cceeEEEEee--cCCCCCCCccccccccChHHHHH
Q 005874          590 HADPFHS---YCVALVVAS-QPAVEEWAAKQGIVGKNARLDKF--EIPAKIKLLS--YPWTSEAGLVTAALKIKREAIRK  661 (672)
Q Consensus       590 ~g~~~~~---~~va~v~~~-~~~~~~~~~~~~~~~~~~~L~~~--~~p~~i~~~~--~~~~~~~~~~t~~gKi~R~~l~~  661 (672)
                      ++.+++.   .+.++|+.. .....+...    ..+.++|+.+  ++|+.+++++  +.|      +|++||++|++|++
T Consensus       449 v~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~l~~~l~~~P~~~~~v~~~~lP------~t~~GKi~r~~L~~  518 (525)
T PRK05851        449 VAVGTGEGSARPGLVIAAEFRGPDEAGAR----SEVVQRVASECGVVPSDVVFVAPGSLP------RTSSGKLRRLAVKR  518 (525)
T ss_pred             EEEEecCCCCceeEEEEEEecCcchHHHH----HHHHHHHHHHhCCCccEEEEECCCCcC------cCcchHHHHHHHHH
Confidence            9865442   355555433 111111111    3344556666  8999999998  565      99999999999998


Q ss_pred             HHHH
Q 005874          662 AFAD  665 (672)
Q Consensus       662 ~~~~  665 (672)
                      .+++
T Consensus       519 ~~~~  522 (525)
T PRK05851        519 SLEA  522 (525)
T ss_pred             HHHh
Confidence            8864

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=4.5e-62  Score=645.53  Aligned_cols=491  Identities=23%  Similarity=0.235  Sum_probs=402.8

Q ss_pred             CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874           55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV  134 (672)
Q Consensus        55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V  134 (672)
                      +...+++++|++.++++||++|+..            ++.           .+||+||.++++++|+.|.+.|+++|++|
T Consensus       508 ~~~~~~~~~~~~~a~~~p~~~A~~~------------~~~-----------~~TY~eL~~~~~~lA~~L~~~gv~~g~~V  564 (5163)
T PRK12316        508 PLQRGVHRLFEEQVERTPEAPALAF------------GEE-----------TLDYAELNRRANRLAHALIERGVGPDVLV  564 (5163)
T ss_pred             CCCCCHHHHHHHHHHHCCCCeEEEe------------CCc-----------eEcHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence            3357899999999999999999986            333           69999999999999999999999999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcc
Q 005874          135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS  214 (672)
Q Consensus       135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~  214 (672)
                      +|+++|++++++++|||+++|++++|++|.++.+++.++++++++++++++......+.    ..... .++.++...  
T Consensus       565 ~l~~~~s~~~i~~~la~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~----~~~~~-~~~~~~~~~--  637 (5163)
T PRK12316        565 GVAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLP----LAAGV-QVLDLDRPA--  637 (5163)
T ss_pred             EEEeCCCHHHHHHHHHHHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCC----cccCc-eEEEecCcc--
Confidence            99999999999999999999999999999999999999999999999999876543221    11111 122222110  


Q ss_pred             cccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcE
Q 005874          215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV  294 (672)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~  294 (672)
                                       .... ......+.....++++++|+|||||||.||||+++|+++++.+.+....+ +++++|+
T Consensus       638 -----------------~~~~-~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~  698 (5163)
T PRK12316        638 -----------------AWLE-GYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAY-GLGVGDT  698 (5163)
T ss_pred             -----------------hhhc-cCCCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhc-CCCCCCE
Confidence                             0000 01111122345678999999999999999999999999999999988888 8999999


Q ss_pred             EEEecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCc
Q 005874          295 YLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGG  374 (672)
Q Consensus       295 ~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~  374 (672)
                      +++++|++|..++..++.+|..|+++++.++....+     +..+...++++++|++.++|++++.|.+....  .    
T Consensus       699 ~l~~~p~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~-----~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~----  767 (5163)
T PRK12316        699 VLQKTPFSFDVSVWEFFWPLMSGARLVVAAPGDHRD-----PAKLVELINREGVDTLHFVPSMLQAFLQDEDV--A----  767 (5163)
T ss_pred             EEeeCCeehHHHHHHHHHHHhCCCEEEECCccccCC-----HHHHHHHHHHcCCeEEEeCHHHHHHHHhcccc--c----
Confidence            999999999999998999999999999843321111     11122239999999999999999988652100  0    


Q ss_pred             hhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCceecccC
Q 005874          375 LSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQGYG  453 (672)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG  453 (672)
                                                                 ..+++|.+++||+++++++.+.+...+ +++++|.||
T Consensus       768 -------------------------------------------~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG  804 (5163)
T PRK12316        768 -------------------------------------------SCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYG  804 (5163)
T ss_pred             -------------------------------------------cCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcC
Confidence                                                       113799999999999999999887654 789999999


Q ss_pred             cccccccccccCC--CCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCC
Q 005874          454 LTETCAGGTFSEV--DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDD  531 (672)
Q Consensus       454 ~TE~~~~~~~~~~--~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~  531 (672)
                      +||++..++....  ......++|.|+++++++|+| +++..+   +.|..|||+|+|+++++||+++|+.|++.|..++
T Consensus       805 ~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~---p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~  880 (5163)
T PRK12316        805 PTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILD-ANLEPV---PVGVLGELYLAGRGLARGYHGRPGLTAERFVPSP  880 (5163)
T ss_pred             cChheeeeeEEecccccCCCCCCccccCCCEEEEEC-CCCCCC---CCCCceEEEecccccChhhCCChhhhhhhCCCCC
Confidence            9999865544322  223446899999999999999 666544   5889999999999999999999999999997554


Q ss_pred             --CCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCCCeEEEEEEcChhHH
Q 005874          532 --KGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVALVVASQPAV  609 (672)
Q Consensus       532 --~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~~~~va~v~~~~~~~  609 (672)
                        ++++||+|||+|++++||.|+++||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+ ...++|+|++.++..
T Consensus       881 ~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~-~G~rI~~~EIE~~l~~~p~V~~a~V~~~~-~~~lva~vv~~~~~~  958 (5163)
T PRK12316        881 FVAGERMYRTGDLARYRADGVIEYAGRIDHQVKL-RGLRIELGEIEARLLEHPWVREAAVLAVD-GKQLVGYVVLESEGG  958 (5163)
T ss_pred             CCCCCeeEecCccEEECCCCCEEeecccCCEEEE-ceEEcChHHHHHHHHhCCCcceEEEEEcC-CCeEEEEEEccCCCC
Confidence              46789999999999999999999999999998 59999999999999999999999999987 667999999876431


Q ss_pred             --HHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHH
Q 005874          610 --EEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFA  664 (672)
Q Consensus       610 --~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~  664 (672)
                        .+...    ..++++||.|++|+.|+++++.|      +|++||++|++|.+.+.
T Consensus       959 ~~~~~l~----~~l~~~Lp~y~vP~~i~~v~~lP------~t~~GKidr~~L~~~~~ 1005 (5163)
T PRK12316        959 DWREALK----AHLAASLPEYMVPAQWLALERLP------LTPNGKLDRKALPAPEA 1005 (5163)
T ss_pred             CCHHHHH----HHHHhhCCCccCCCeEEEHhhCC------CCCCCChhHHhhcCccc
Confidence              12122    66778999999999999999987      99999999999987644

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=5.7e-62  Score=644.52  Aligned_cols=487  Identities=23%  Similarity=0.278  Sum_probs=400.8

Q ss_pred             CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874           55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV  134 (672)
Q Consensus        55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V  134 (672)
                      +...+++++|++.++++|+++|+.+            .+.           .+||+||.++++++|.+|.++|+++|++|
T Consensus      2000 ~~~~~~~~~~~~~a~~~p~~~A~~~------------~~~-----------~lTy~eL~~~a~~lA~~L~~~gv~~g~~V 2056 (5163)
T PRK12316       2000 PRGPGVHQRIAEQAARAPEAIAVVF------------GDQ-----------HLSYAELDSRANRLAHRLRARGVGPEVRV 2056 (5163)
T ss_pred             CCCCCHHHHHHHHHHhCCCCeEEEc------------CCC-----------eEcHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence            3446899999999999999999986            333           69999999999999999999999999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcc
Q 005874          135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS  214 (672)
Q Consensus       135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~  214 (672)
                      +|+++|++++++++|||+++|+++||++|.++.+++.++++++++++++++.+....+..    ...+..+ .++..   
T Consensus      2057 ~l~~~~s~~~~~~~lAil~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~----~~~~~~~-~~~~~--- 2128 (5163)
T PRK12316       2057 AIAAERSFELVVALLAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPL----PAGVARL-PLDRD--- 2128 (5163)
T ss_pred             EEEeCCCHHHHHHHHHHHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhccc----ccccceE-eccch---
Confidence            999999999999999999999999999999999999999999999999999865543211    1111111 11110   


Q ss_pred             cccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcE
Q 005874          215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV  294 (672)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~  294 (672)
                                      .++...  ....+.....++++++|+|||||||.||||+++|+++++.+......+ .++++|+
T Consensus      2129 ----------------~~~~~~--~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~ 2189 (5163)
T PRK12316       2129 ----------------AEWADY--PDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY-ELSPADC 2189 (5163)
T ss_pred             ----------------hhhhcc--CccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhc-CCCCcce
Confidence                            000000  111122345789999999999999999999999999999999888888 8999999


Q ss_pred             EEEecChHhHHHHHHHHHHhHhCcEEeeC-----CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhh
Q 005874          295 YLAYLPLAHVLELVAENLIAGVGSAIGYG-----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKV  369 (672)
Q Consensus       295 ~l~~~pl~h~~~~~~~~~~l~~G~~i~~~-----~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~  369 (672)
                      ++.++|++|..++..++.+|..|+++++.     ++..+.+.           ++++++|++.++|+++..+.+......
T Consensus      2190 ~l~~~~~~fd~~~~~~~~~L~~G~~~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~~~~~~~ 2258 (5163)
T PRK12316       2190 ELQFMSFSFDGAHEQWFHPLLNGARVLIRDDELWDPEQLYDE-----------MERHGVTILDFPPVYLQQLAEHAERDG 2258 (5163)
T ss_pred             EEEecCchHHHHHHHHHHHHhCCCEEEeCCcccCCHHHHHHH-----------HHHcCCeEEEcChHHHHHHHhhhhccc
Confidence            99999999999998899999999999773     23334444           999999999999999998876321100


Q ss_pred             hhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCce
Q 005874          370 DAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPI  448 (672)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v  448 (672)
                                                                      ...+||.+++||+++++++.+.|.+.+ +.++
T Consensus      2259 ------------------------------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l 2290 (5163)
T PRK12316       2259 ------------------------------------------------RPPAVRVYCFGGEAVPAASLRLAWEALRPVYL 2290 (5163)
T ss_pred             ------------------------------------------------CCcceeEEEEecccCCHHHHHHHHHhCCCcEE
Confidence                                                            012799999999999999999998765 6789


Q ss_pred             ecccCcccccccccccCCCCC-----CCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhh
Q 005874          449 GQGYGLTETCAGGTFSEVDDS-----SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT  523 (672)
Q Consensus       449 ~~~YG~TE~~~~~~~~~~~~~-----~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t  523 (672)
                      +|+||+||++..++.......     ...++|.|+++++++|+| +++..+   +.|..|||||+|+++++||+++|+.|
T Consensus      2291 ~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~v---p~g~~GEl~i~G~~v~~GY~~~p~~T 2366 (5163)
T PRK12316       2291 FNGYGPTEAVVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILD-ADLNLL---APGMAGELYLGGEGLARGYLNRPGLT 2366 (5163)
T ss_pred             EECccchhheeeeeeeecccccccCCCcCCcccccCCCEEEEEC-CCCCCC---CCCCeeEEEecchhhcccccCChhhh
Confidence            999999999877655433221     125799999999999999 666544   58999999999999999999999999


Q ss_pred             hhhcccCC---CCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC--CeE
Q 005874          524 KEVYKVDD---KGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH--SYC  598 (672)
Q Consensus       524 ~~~~~~~~---~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~--~~~  598 (672)
                      ++.|..++   .+++||+|||+|++++||.|+++||+||+||+ +|++|+|.|||++|.+||+|.+++|++..+.  +.+
T Consensus      2367 ~~~f~~~~~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki-~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~~~~~l 2445 (5163)
T PRK12316       2367 AERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKI-RGFRIELGEIEARLQAHPAVREAVVVAQDGASGKQL 2445 (5163)
T ss_pred             hhhccCCCCCCCCCeeEecccEEEEcCCCcEEEecCCCCeEEE-cCccCChHHHHHHHhhCcccceEEEEEEecCCCeEE
Confidence            99997553   25689999999999999999999999999998 5999999999999999999999999986533  579


Q ss_pred             EEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHH
Q 005874          599 VALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAF  663 (672)
Q Consensus       599 va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~  663 (672)
                      +|+|++.++........+  ..+.++||.|++|..+++++..|      +|++||++|++|++..
T Consensus      2446 ~a~v~~~~~~~~~~~~l~--~~l~~~Lp~~~vP~~~~~l~~lP------~t~~GKidR~~L~~~~ 2502 (5163)
T PRK12316       2446 VAYVVPDDAAEDLLAELR--AWLAARLPAYMVPAHWVVLERLP------LNPNGKLDRKALPKPD 2502 (5163)
T ss_pred             EEEEEecCCCccCHHHHH--HHHHhhCchhcCcceEeeecccC------CCCCCccCHhhcCCCc
Confidence            999998775422111111  66778999999999999999987      9999999999997654

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.2e-61  Score=532.37  Aligned_cols=481  Identities=20%  Similarity=0.237  Sum_probs=375.4

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCC-CCCCEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGH-KKEERVAI  136 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~-~~g~~V~i  136 (672)
                      .|+.++|..++  .|+++|+.+            ++.           .+||.||.+++.++|.+|.+.|+ .+|++|++
T Consensus         3 ~~~~~~l~~~~--~p~~~Al~~------------~~~-----------~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i   57 (540)
T PRK13388          3 DTIAQLLRDRA--GDDTIAVRY------------GDR-----------TWTWREVLAEAAARAAALIALADPDRPLHVGV   57 (540)
T ss_pred             hhHHHHHHhhc--cCCceEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            57888888764  799999976            444           69999999999999999999999 79999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccc
Q 005874          137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV  216 (672)
Q Consensus       137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~  216 (672)
                      +++|+++++++++||+++|++++|++|.++.+++.+++++++++.+|++.+....+.+..  .+.++.++ ++..     
T Consensus        58 ~~~n~~~~v~~~lA~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~--~~~~~~i~-~~~~-----  129 (540)
T PRK13388         58 LLGNTPEMLFWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD--LPGVRVLD-VDTP-----  129 (540)
T ss_pred             ECCCCcHHHHHHHHHHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc--ccCceEEE-ccch-----
Confidence            999999999999999999999999999999999999999999999999987766554431  23333332 2211     


Q ss_pred             cccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEE
Q 005874          217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL  296 (672)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l  296 (672)
                                  .+.++...... ..+.....++++++++|||||||.||||+++|+++..........+ +++.+|+++
T Consensus       130 ------------~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~l  195 (540)
T PRK13388        130 ------------AYAELVAAAGA-LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERF-GLTRDDVCY  195 (540)
T ss_pred             ------------hhhhhhccccC-cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHh-CCCCCCEEE
Confidence                        12222221111 1112235679999999999999999999999999998888777777 899999999


Q ss_pred             EecChHhHHHHHHHH-HHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhc
Q 005874          297 AYLPLAHVLELVAEN-LIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAK  372 (672)
Q Consensus       297 ~~~pl~h~~~~~~~~-~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~  372 (672)
                      +.+|++|.+++...+ .++..|+++++   .++..+++.           ++++++|++..+|..+..+......    .
T Consensus       196 ~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~vt~~~~~p~~l~~l~~~~~~----~  260 (540)
T PRK13388        196 VSMPLFHSNAVMAGWAPAVASGAAVALPAKFSASGFLDD-----------VRRYGATYFNYVGKPLAYILATPER----P  260 (540)
T ss_pred             EeeCchhhcchHHHHHHHHHcCcEEEECCCCCHHHHHHH-----------HHHhCCeEEEehHHHHHHHHhCCCC----c
Confidence            999999999887644 57999999988   344444444           9999999999999998877642100    0


Q ss_pred             CchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceeccc
Q 005874          373 GGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGY  452 (672)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~Y  452 (672)
                      .                                           ....+++.+ + |++++++..+.+...+++++++.|
T Consensus       261 ~-------------------------------------------~~~~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~Y  295 (540)
T PRK13388        261 D-------------------------------------------DADNPLRVA-F-GNEASPRDIAEFSRRFGCQVEDGY  295 (540)
T ss_pred             c-------------------------------------------ccccceEEE-E-CCCCCHHHHHHHHHHhCCceeccc
Confidence            0                                           000256643 3 566788888888888899999999


Q ss_pred             CcccccccccccCCCCCCCCccCCCcCCeEEE-----------EEecCCCCcccCCCCCCccEEEEc-cCcccccccCCc
Q 005874          453 GLTETCAGGTFSEVDDSSVGRVGAPLPCSFIK-----------LIDWPEGGYLTSDSPMPRGEIVIA-GPNVTVGYFKNE  520 (672)
Q Consensus       453 G~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~-----------i~d~~~~~~~~~~~~g~~GEi~v~-g~~v~~gY~~~~  520 (672)
                      |+||++.+++...  ....+++|.|.+++++.           ++| +++..+  ...+..|||+++ |++++.||+++|
T Consensus       296 G~tE~~~~~~~~~--~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~--~~~~~~GEl~v~~g~~~~~gY~~~~  370 (540)
T PRK13388        296 GSSEGAVIVVREP--GTPPGSIGRGAPGVAIYNPETLTECAVARFD-AHGALL--NADEAIGELVNTAGAGFFEGYYNNP  370 (540)
T ss_pred             ccccccceeecCC--CCCCCCCCCCCCCcEEEcCCCCccccceecc-Cccccc--cCCCcceEEEEecCCcccccccCCh
Confidence            9999986654322  23457899999996653           222 122221  134568999998 999999999999


Q ss_pred             hhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---Ce
Q 005874          521 EKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SY  597 (672)
Q Consensus       521 ~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~  597 (672)
                      +.+++.|     .+|||+|||+|++++||.+++.||++|+||+ +|++|+|.+||+++.++|+|.+|+|++..++   +.
T Consensus       371 ~~t~~~~-----~~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~  444 (540)
T PRK13388        371 EATAERM-----RHGMYWSGDLAYRDADGWIYFAGRTADWMRV-DGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQ  444 (540)
T ss_pred             HHHHHHh-----hcCceeccceEEEcCCCcEEEeccCCceEEE-CCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCce
Confidence            9999988     5789999999999999999999999999997 6999999999999999999999999998754   35


Q ss_pred             EEEEEEcChhHHHHHHHHcChhhhh--cCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHH
Q 005874          598 CVALVVASQPAVEEWAAKQGIVGKN--ARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFA  664 (672)
Q Consensus       598 ~va~v~~~~~~~~~~~~~~~~~~~~--~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~  664 (672)
                      +++++++.++...+.....  +.+.  ..|+.+++|..++++++.|      +|++||++|++|++...
T Consensus       445 ~~~~v~~~~~~~~~~~~l~--~~l~~~~~l~~~~~P~~~~~v~~iP------~t~~GKv~R~~L~~~~~  505 (540)
T PRK13388        445 VMAALVLRDGATFDPDAFA--AFLAAQPDLGTKAWPRYVRIAADLP------STATNKVLKRELIAQGW  505 (540)
T ss_pred             eEEEEEECCCCcCCHHHHH--HHHHhhccCCcccCCcEEEEeccCC------CCCcceeeHHhHHHhcc
Confidence            6777776654321111111  2222  3699999999999999988      99999999999998653

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=8.8e-62  Score=632.98  Aligned_cols=496  Identities=24%  Similarity=0.304  Sum_probs=401.9

Q ss_pred             CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874           57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI  136 (672)
Q Consensus        57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i  136 (672)
                      ..+++++|+++++++||++|+.+            +++           .+||+||.++++++|+.|.+.|+++|++|+|
T Consensus       511 ~~~~~~~~~~~a~~~pd~~Al~~------------~~~-----------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i  567 (3956)
T PRK12467        511 PDCVHQLIEAQARQHPERPALVF------------GEQ-----------VLSYAELNRQANRLAHVLIAAGVGPDVLVGI  567 (3956)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEe------------CCc-----------eEcHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            46899999999999999999986            333           6999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccc
Q 005874          137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV  216 (672)
Q Consensus       137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~  216 (672)
                      +++|+++++++++||+++|+++||++|.++.+++.++++++++++++++.+....+.    ...... ++.++...    
T Consensus       568 ~~~~s~~~vv~~lail~aG~~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~~~-~~~~~~~~----  638 (3956)
T PRK12467        568 AVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLAQLP----VPAGLR-SLCLDEPA----  638 (3956)
T ss_pred             EeCCCHHHHHHHHHHHHhCcEEeccCCCChHHHHHHHHHhcCCCEEEechhhhhhcc----cccCcc-EEEecccc----
Confidence            999999999999999999999999999999999999999999999999985433221    111111 11211110    


Q ss_pred             cccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEE
Q 005874          217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL  296 (672)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l  296 (672)
                                     +... ......+.....++++++|+|||||||.||||+++|+++++.+......+ ++.++|+++
T Consensus       639 ---------------~~~~-~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l  701 (3956)
T PRK12467        639 ---------------DLLC-GYSGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERL-QLAADDSML  701 (3956)
T ss_pred             ---------------cccc-ccCCCCCCCCCCCCCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhc-CCCCCCEEE
Confidence                           0000 00111122345679999999999999999999999999999999888888 899999999


Q ss_pred             EecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchh
Q 005874          297 AYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLS  376 (672)
Q Consensus       297 ~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~  376 (672)
                      ++.|++|..+.+.++.+|..|+++++.++....+     +..+...++++++|++.++|+++..+.+.....        
T Consensus       702 ~~~~~~fd~~~~~~~~~L~~G~~lv~~~~~~~~~-----~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~--------  768 (3956)
T PRK12467        702 MVSTFAFDLGVTELFGALASGATLHLLPPDCARD-----AEAFAALMADQGVTVLKIVPSHLQALLQASRVA--------  768 (3956)
T ss_pred             EecCccHhHHHHHHHHHHhCCCEEEEcCccccCC-----HHHHHHHHHHcCCeEEEcCHHHHHHHHhhhccc--------
Confidence            9999999999999999999999999944332211     111222399999999999999999887632110        


Q ss_pred             HHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCceecccCcc
Q 005874          377 KKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQGYGLT  455 (672)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~T  455 (672)
                                                               ...++|.+++||+++++++.+.+++.+ +++++|.||+|
T Consensus       769 -----------------------------------------~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~T  807 (3956)
T PRK12467        769 -----------------------------------------LPRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPT  807 (3956)
T ss_pred             -----------------------------------------cCCcccEEEEEeecCCHHHHHHHHHhCCCCEEEeCcCCC
Confidence                                                     012679999999999999999998875 78999999999


Q ss_pred             cccccccccCCCCC----CCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCC
Q 005874          456 ETCAGGTFSEVDDS----SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDD  531 (672)
Q Consensus       456 E~~~~~~~~~~~~~----~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~  531 (672)
                      |++..++.......    ...++|.|+++++++|+| ++++.+   +.|..|||+|+|+++++||+++|+.|+++|..++
T Consensus       808 E~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~v---p~G~~GEL~i~G~~v~~GYl~~p~~T~~~F~~~p  883 (3956)
T PRK12467        808 ETTVGVSTYELSDEERDFGNVPIGQPLANLGLYILD-HYLNPV---PVGVVGELYIGGAGLARGYHRRPALTAERFVPDP  883 (3956)
T ss_pred             hhhhheeeEecccccccCCCCcccCCcCCCEEEEEC-CCCCCC---CCCCceEEEecccccchhhcCCccccHhhCcCCC
Confidence            99877665543322    225799999999999999 666554   5889999999999999999999999999997654


Q ss_pred             ---CCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC--CeEEEEEEcCh
Q 005874          532 ---KGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH--SYCVALVVASQ  606 (672)
Q Consensus       532 ---~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~--~~~va~v~~~~  606 (672)
                         ++++||+|||+|++++||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.++.  ..++|++++..
T Consensus       884 ~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~vki-~G~rI~~~eIE~~L~~~p~V~~a~v~~~~~~~~~~lva~vv~~~  962 (3956)
T PRK12467        884 FGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKI-RGFRIELGEIEARLLAQPGVREAVVLAQPGDAGLQLVAYLVPAA  962 (3956)
T ss_pred             CCCCCceeEecCceeEEcCCCcEEEeccccCeEEE-CCEecCHHHHHHHHHhCCCcceEEEEEEcCCCCcEEEEEEEecc
Confidence               46689999999999999999999999999998 5999999999999999999999999985433  46999999653


Q ss_pred             hHHH---HHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874          607 PAVE---EWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD  666 (672)
Q Consensus       607 ~~~~---~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~  666 (672)
                      ....   ..........+++.||.|++|..+++++..|      +|++||++|++|.+.+...
T Consensus       963 ~~~~~~~~~~~~~l~~~l~~~Lp~y~vP~~~~~l~~lP------~t~~GKidR~~L~~~~~~~ 1019 (3956)
T PRK12467        963 VADGAEHQATRDELKAQLRQVLPDYMVPAHLLLLDSLP------LTPNGKLDRKALPKPDASA 1019 (3956)
T ss_pred             cccccccccCHHHHHHHHHhhCchhcCCceEeeecccC------CCCCCCcCHhhcCCccccc
Confidence            2110   0000111166778999999999999999987      9999999999998765443

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=1e-60  Score=527.65  Aligned_cols=489  Identities=22%  Similarity=0.241  Sum_probs=388.5

Q ss_pred             CHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEc
Q 005874           59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFA  138 (672)
Q Consensus        59 tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~  138 (672)
                      ++.+.+++.+..+|+++|+..            .+.           .+||+||.+++.++|..|.+.|+++|++|++++
T Consensus         1 ~~~~~l~~~a~~~p~~~a~~~------------~~~-----------~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~   57 (502)
T TIGR01734         1 KLIEAIQAFAETYPQTIAYRY------------QGQ-----------ELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYG   57 (502)
T ss_pred             CHHHHHHHHHHHCCCceEEEc------------CCc-----------EEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence            477899999999999999976            343           699999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccccc
Q 005874          139 DTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSS  218 (672)
Q Consensus       139 ~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~  218 (672)
                      +|+.++++++|||+++|++++|+++.++.+.+.++++..+++.++++......+..       .. ++.++         
T Consensus        58 ~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~-------~~-~~~~~---------  120 (502)
T TIGR01734        58 HMEPHMLVAFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG-------TQ-IITLS---------  120 (502)
T ss_pred             CCCHHHHHHHHHHHHhCCEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccccC-------Cc-eEEch---------
Confidence            99999999999999999999999999999999999999999999998765332211       11 11110         


Q ss_pred             cccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEEEe
Q 005874          219 VEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAY  298 (672)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~  298 (672)
                                ...++...... ........+++.++++|||||||.||+|+++|+++.+........+ .+..+|++++.
T Consensus       121 ----------~~~~~~~~~~~-~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~~~~l~~  188 (502)
T TIGR01734       121 ----------ALEQAETSGGP-VSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADF-PLSEGKQFLNQ  188 (502)
T ss_pred             ----------HhhhhhhhcCC-ccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhC-CCCCCceEEee
Confidence                      01111111111 1111234578999999999999999999999999999888877777 88899999999


Q ss_pred             cChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhHH
Q 005874          299 LPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKK  378 (672)
Q Consensus       299 ~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~  378 (672)
                      +|++|..++...+.++..|+++++.+.....+     ...+...++++++|.+.++|.+++.++......          
T Consensus       189 ~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~----------  253 (502)
T TIGR01734       189 APFSFDLSVMDLYPCLASGGTLHCLDKDITNN-----FKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFN----------  253 (502)
T ss_pred             cCceechhHHHHHHHHHCCCEEEEcCHHHhcC-----HHHHHHHHHHcCCeEEEEChhHHHHHHhccccc----------
Confidence            99999999988888999999998843221111     111222389999999999999987665421100          


Q ss_pred             HHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCceecccCcccc
Q 005874          379 LFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQGYGLTET  457 (672)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE~  457 (672)
                                                           ....++++.++++|+++++++.+.+.+.+ ++++++.||+||+
T Consensus       254 -------------------------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~  296 (502)
T TIGR01734       254 -------------------------------------QENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEA  296 (502)
T ss_pred             -------------------------------------cccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcc
Confidence                                                 01124899999999999999999998877 7899999999998


Q ss_pred             cccccccCC-----CCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCC
Q 005874          458 CAGGTFSEV-----DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDK  532 (672)
Q Consensus       458 ~~~~~~~~~-----~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~  532 (672)
                      ++..+....     ......++|.|.++++++|+| +++..+   +.|+.|||+++|++++.||+++++.+.+.|.. .+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~-~~~~~~---~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~-~~  371 (502)
T TIGR01734       297 TVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMD-EEGEPL---PEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFS-HE  371 (502)
T ss_pred             eEEEEEEEccccccccCCccccccccCCCEEEEEC-CCCCCC---CCCCeeEEEEccccccccccCCcccchHhhee-CC
Confidence            754433221     122335799999999999999 555544   47889999999999999999999999887742 23


Q ss_pred             CCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecC--C--CCeEEEEEEcChhH
Q 005874          533 GMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADP--F--HSYCVALVVASQPA  608 (672)
Q Consensus       533 ~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~--~--~~~~va~v~~~~~~  608 (672)
                      +.+||+|||+|+++++ .|+++||.+|+|++ +|++|+|++||+++.++|.|.+++|++..  +  ...++++|++....
T Consensus       372 ~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~  449 (502)
T TIGR01734       372 GQPAYRTGDAGTITDG-QLFYQGRLDFQIKL-HGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETED  449 (502)
T ss_pred             CcEEEECCCEEEEECC-EEEEeccccCeEEE-CcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccc
Confidence            5689999999999966 99999999999997 69999999999999999999999999843  1  24689999987643


Q ss_pred             HHHH--HHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHH
Q 005874          609 VEEW--AAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFA  664 (672)
Q Consensus       609 ~~~~--~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~  664 (672)
                      ..+.  ........+.++|+.+++|+.+++++..|      +|++||++|++|++++.
T Consensus       450 ~~~~~~~~~~i~~~~~~~l~~~~~P~~~~~v~~lP------~t~~gKv~r~~l~~~~~  501 (502)
T TIGR01734       450 FEKEFQLTKAIKKELKKSLPAYMIPRKFIYRDQLP------LTANGKIDRKALAEEVN  501 (502)
T ss_pred             cccchhhHHHHHHHHhhhChhhcCCcEEEEccccC------CCCCCcccHHHHHHhhc
Confidence            2211  11111266678999999999999999987      99999999999998764

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1.3e-61  Score=637.08  Aligned_cols=496  Identities=20%  Similarity=0.262  Sum_probs=402.7

Q ss_pred             CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874           55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV  134 (672)
Q Consensus        55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V  134 (672)
                      +...+++++|+++++++||++|+...           ++            .+||+||.++++++|+.|.++|+++|++|
T Consensus      3717 ~~~~~~~~~~~~~~~~~p~~~Av~~~-----------~~------------~~tY~eL~~~~~~la~~L~~~gv~~~~~V 3773 (4334)
T PRK05691       3717 PLEQSYVRLFEAQVAAHPQRIAASCL-----------DQ------------QWSYAELNRAANRLGHALRAAGVGVDQPV 3773 (4334)
T ss_pred             ccccCHHHHHHHHHHhCCCceEEEcC-----------CC------------cccHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence            44569999999999999999999973           33            59999999999999999999999999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCc--cEEEEecCCC
Q 005874          135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTV--KHVICMDANI  212 (672)
Q Consensus       135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l--~~ii~~~~~~  212 (672)
                      +|++++++++++++|||+++|+++|||+|+++.+++.++++++++++++++.............+...  ..++..+   
T Consensus      3774 ~v~~~~s~~~~v~~lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 3850 (4334)
T PRK05691       3774 ALLAERGLDLLGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWE--- 3850 (4334)
T ss_pred             EEEeCCCHHHHHHHHHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeec---
Confidence            99999999999999999999999999999999999999999999999999987655443333222111  1111111   


Q ss_pred             cccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCC
Q 005874          213 PSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSK  292 (672)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~  292 (672)
                                         +..........+.....+++.|+|+|||||||.||||+++|+|+++.+.+....+ .++++
T Consensus      3851 -------------------~~~~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~-~~~~~ 3910 (4334)
T PRK05691       3851 -------------------EVQAGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL-ALSEA 3910 (4334)
T ss_pred             -------------------ccccccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhc-CCCcc
Confidence                               1111111111222345689999999999999999999999999999999888888 99999


Q ss_pred             cEEEEecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhc
Q 005874          293 DVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAK  372 (672)
Q Consensus       293 d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~  372 (672)
                      |+++.+.+++|..+.+..+.+|..|+++++.+.....+     +..+...++++++|++.++|+++..+.......    
T Consensus      3911 ~~~~~~~s~~fd~s~~~~~~~l~~G~~l~i~~~~~~~~-----~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~~---- 3981 (4334)
T PRK05691       3911 DVIAQTASQSFDISVWQFLAAPLFGARVEIVPNAIAHD-----PQGLLAHVQAQGITVLESVPSLIQGMLAEDRQA---- 3981 (4334)
T ss_pred             ceEEEecCCchhHHHHHHHHHHhCCCEEEEcCccccCC-----HHHHHHHHHHcCCeEEEeCHHHHHHHHhhcccc----
Confidence            99999999999999999999999999999843322111     111222399999999999999998876521110    


Q ss_pred             CchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCceecc
Q 005874          373 GGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQG  451 (672)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~  451 (672)
                                                                    .++||.+++||+++++++.+.|.+.+ +++++|.
T Consensus      3982 ----------------------------------------------~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~ 4015 (4334)
T PRK05691       3982 ----------------------------------------------LDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNA 4015 (4334)
T ss_pred             ----------------------------------------------CCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeC
Confidence                                                          13799999999999999988887654 7899999


Q ss_pred             cCcccccccccccCCCC----CCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhc
Q 005874          452 YGLTETCAGGTFSEVDD----SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVY  527 (672)
Q Consensus       452 YG~TE~~~~~~~~~~~~----~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~  527 (672)
                      ||+||++..++......    ....++|.|++++.++|+| +.+..+   +.|..|||+|+|+++++||+++|+.|+++|
T Consensus      4016 YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~~---p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f 4091 (4334)
T PRK05691       4016 YGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLD-EALELV---PLGAVGELCVAGTGVGRGYVGDPLRTALAF 4091 (4334)
T ss_pred             ccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEEC-CCCCCC---CCCCceEEEEecccccccccCCcccchhhc
Confidence            99999998776543322    1235799999999999999 555554   588999999999999999999999999999


Q ss_pred             ccCC---CCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecC--CCCeEEEEE
Q 005874          528 KVDD---KGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADP--FHSYCVALV  602 (672)
Q Consensus       528 ~~~~---~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~--~~~~~va~v  602 (672)
                      ..++   ++++||||||+|++++||.|+++||+|++||++ |++|++.|||++|.++|+|.+++|+...  ....++|++
T Consensus      4092 ~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~-G~riel~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~~ 4170 (4334)
T PRK05691       4092 VPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIR-GYRIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGYL 4170 (4334)
T ss_pred             ccCCCCCCCceeeccCcceeecCCCcEEEecccCCcEEec-eEEecHHHHHHHHHhCCCccEEEEEEecCCCCcEEEEEE
Confidence            7664   367899999999999999999999999999985 9999999999999999999999887543  235799999


Q ss_pred             EcChhHHHH-HHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHH
Q 005874          603 VASQPAVEE-WAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKA  662 (672)
Q Consensus       603 ~~~~~~~~~-~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~  662 (672)
                      ++....... ...+.....++++||.|++|..++.++..|      +|++|||+|++|++.
T Consensus      4171 ~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~~~~lP------~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691       4171 VPHQTVLAQGALLERIKQRLRAELPDYMVPLHWLWLDRLP------LNANGKLDRKALPAL 4225 (4334)
T ss_pred             eCCcccccchHHHHHHHHHHHhhCChhhcCcceeecccCC------CCCCCcccHhhcCCC
Confidence            987653211 011111156679999999999999999987      999999999999764

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.5e-60  Score=527.94  Aligned_cols=510  Identities=24%  Similarity=0.314  Sum_probs=395.9

Q ss_pred             CCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 005874           56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA  135 (672)
Q Consensus        56 ~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~  135 (672)
                      ...++.++|.+.++++|+++|+.+            .+.           .+||.||.+++.++|..|.+.|+++|++|+
T Consensus        21 ~~~~i~~~l~~~a~~~p~~~a~~~------------~~~-----------~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~   77 (557)
T PRK07059         21 QYPSLADLLEESFRQYADRPAFIC------------MGK-----------AITYGELDELSRALAAWLQSRGLAKGARVA   77 (557)
T ss_pred             CCCCHHHHHHHHHHHcCCCceEEE------------cCc-----------eeeHHHHHHHHHHHHHHHHHhCCCCCCEEE
Confidence            346899999999999999999986            333           699999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCccc
Q 005874          136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSA  215 (672)
Q Consensus       136 i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~  215 (672)
                      ++++|+++++++++||+++|++++|+++..+.+++.++++.++++.+|+++.....+.+..... ..+.++.........
T Consensus        78 i~~~n~~~~~~~~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  156 (557)
T PRK07059         78 IMMPNVLQYPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKT-AVKHVVVASMGDLLG  156 (557)
T ss_pred             EECCCCHHHHHHHHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhccc-CCceeEEeccccccc
Confidence            9999999999999999999999999999999999999999999999999987666555543322 233333322110000


Q ss_pred             c-----c--------ccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHH
Q 005874          216 V-----S--------SVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV  282 (672)
Q Consensus       216 ~-----~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~  282 (672)
                      .     .        ............++++...............++++++|+|||||||.||+|+++|.+++..+...
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~  236 (557)
T PRK07059        157 FKGHIVNFVVRRVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQM  236 (557)
T ss_pred             ccccccccccccccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHH
Confidence            0     0        00000011224455555444333333345667899999999999999999999999998765543


Q ss_pred             HhhcC---CC---CCCcEEEEecChHhHHHHHH-HHHHhHhCcEEee-CCcccccCchhhhhcccccccccccceeeecc
Q 005874          283 MTIVP---DL---GSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY-GTPLTLTDTSSKIKKGTQGDASVLRPTVMASV  354 (672)
Q Consensus       283 ~~~~~---~~---~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~-~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~  354 (672)
                      ...+.   ..   ...+.+++.+|++|.+++.. .+.++..|++.++ .++...        ..++..++++++|.+.++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~i~~~~vt~~~~~  308 (557)
T PRK07059        237 EAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDI--------PGFIKELKKYQVHIFPAV  308 (557)
T ss_pred             hhhhcccccccCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCH--------HHHHHHHHHhCCeeeecC
Confidence            32220   11   12457889999999998765 5567778887666 322111        112223899999999999


Q ss_pred             hHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCH
Q 005874          355 PAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSA  434 (672)
Q Consensus       355 P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~  434 (672)
                      |.++..+......                                               .....+++|.++.||+++++
T Consensus       309 p~~~~~l~~~~~~-----------------------------------------------~~~~~~~l~~~~~gg~~~~~  341 (557)
T PRK07059        309 NTLYNALLNNPDF-----------------------------------------------DKLDFSKLIVANGGGMAVQR  341 (557)
T ss_pred             HHHHHHHHcCcCc-----------------------------------------------CcCCchhheEEEeccccCCH
Confidence            9999988753110                                               00011378999999999999


Q ss_pred             HHHHHHHHHhCCceecccCcccccccccccCCCC-CCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCccc
Q 005874          435 DTQRFINICLGAPIGQGYGLTETCAGGTFSEVDD-SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVT  513 (672)
Q Consensus       435 ~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~  513 (672)
                      .+.+.+...+++++++.||+||++.+++...... ...+++|.|+++++++|+| +++..+   +.|+.|||+++|+.++
T Consensus       342 ~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~~---~~g~~Gel~v~g~~~~  417 (557)
T PRK07059        342 PVAERWLEMTGCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRD-DDGNDL---PLGEPGEICIRGPQVM  417 (557)
T ss_pred             HHHHHHHHHhCCCeeeccccccccchhhcCCCCCCCcCCcccCccCCcEEEEEC-CCCCCC---CCCCceEEEEeCCccc
Confidence            9999999989999999999999987765543322 2347899999999999999 666654   4788999999999999


Q ss_pred             ccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecC
Q 005874          514 VGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADP  593 (672)
Q Consensus       514 ~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~  593 (672)
                      .||+++++.+.+.|.    .+|||+|||+|++++||.++++||++|+++. +|++|+|.+||+++.++|+|.+++|++..
T Consensus       418 ~gY~~~~~~~~~~~~----~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~-~G~~i~p~~iE~~l~~~~~V~~~~v~~~~  492 (557)
T PRK07059        418 AGYWNRPDETAKVMT----ADGFFRTGDVGVMDERGYTKIVDRKKDMILV-SGFNVYPNEIEEVVASHPGVLEVAAVGVP  492 (557)
T ss_pred             hhhhcCHHHHhhhcc----cCCceecCcEEEEcCCCcEEEecccccceEE-CCEEEcHHHHHHHHHhCCceeEEEEEecc
Confidence            999999999998887    7899999999999999999999999999997 59999999999999999999999999865


Q ss_pred             CC---CeEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHH
Q 005874          594 FH---SYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKA  662 (672)
Q Consensus       594 ~~---~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~  662 (672)
                      ++   +.++++++..+......   .....+.+.|+.+++|..+.+++..|      +|++||++|+.|+++
T Consensus       493 ~~~~ge~~~~~v~~~~~~~~~~---~l~~~~~~~l~~~~~P~~i~~v~~~P------~t~~GK~~r~~L~~~  555 (557)
T PRK07059        493 DEHSGEAVKLFVVKKDPALTEE---DVKAFCKERLTNYKRPKFVEFRTELP------KTNVGKILRRELRDG  555 (557)
T ss_pred             cCCCCeeEEEEEEeCCCCCCHH---HHHHHHHHhcccccCCcEEEEeccCC------CCcccceeHHHHHhh
Confidence            54   45888888665322111   11145568899999999999999987      999999999999864

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.6e-60  Score=529.02  Aligned_cols=509  Identities=23%  Similarity=0.279  Sum_probs=394.9

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF  137 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~  137 (672)
                      .++.++|+++++.+|+++|+.+            .++           .+||.||.+++.++|..|.++|+++|++|+++
T Consensus        33 ~~l~~~l~~~a~~~p~~~al~~------------~~~-----------~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~   89 (567)
T PRK06178         33 RPLTEYLRAWARERPQRPAIIF------------YGH-----------VITYAELDELSDRFAALLRQRGVGAGDRVAVF   89 (567)
T ss_pred             ccHHHHHHHHHHHCCCceEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            6899999999999999999986            344           69999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCccccc
Q 005874          138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS  217 (672)
Q Consensus       138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~  217 (672)
                      ++|+++++++++||+++|++++|++|..+.+.+.++++.++++++++++...+.+.+..... .++.++...........
T Consensus        90 ~~n~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~-~~~~i~~~~~~~~~~~~  168 (567)
T PRK06178         90 LPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET-SLRHVIVTSLADVLPAE  168 (567)
T ss_pred             CCCCcHHHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC-CcceEEEeccccccccc
Confidence            99999999999999999999999999999999999999999999999998887776655443 34444443321100000


Q ss_pred             -ccc---cC--CCeEEEeHHHHHhcccC--CCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCC
Q 005874          218 -SVE---QS--GRWKITSFADVQILGRE--NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL  289 (672)
Q Consensus       218 -~~~---~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~  289 (672)
                       ...   ..  .......+.++......  .........++++++|+|||||||.||+|++||+|++..+.........+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~  248 (567)
T PRK06178        169 PTLPLPDSLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVG  248 (567)
T ss_pred             cccccccccccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccC
Confidence             000   00  00000112222222111  11112335678999999999999999999999999988766554432377


Q ss_pred             CCCcEEEEecChHhHHHHHH-HHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHH
Q 005874          290 GSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGV  365 (672)
Q Consensus       290 ~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~  365 (672)
                      +.+|++++++|++|.+++.. .+.+++.|+++++   +++..+...           ++++++|.+.++|..+..+....
T Consensus       249 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~-----------i~~~~~t~~~~~~~~~~~l~~~~  317 (567)
T PRK06178        249 GEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAA-----------VERYRVTRTVMLVDNAVELMDHP  317 (567)
T ss_pred             CCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHH-----------HHHhCCeEEeccHHHHHHHHhCC
Confidence            89999999999999999865 6778999999998   334444444           99999999999999887775421


Q ss_pred             HHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEE--EcCCCCCHHHHHHHHHH
Q 005874          366 RKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFIL--SGGAPLSADTQRFINIC  443 (672)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~--~gG~~l~~~~~~~~~~~  443 (672)
                      ..  .                                             .....+++.+.  +.++++++++.+.++..
T Consensus       318 ~~--~---------------------------------------------~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  350 (567)
T PRK06178        318 RF--A---------------------------------------------EYDLSSLRQVRVVSFVKKLNPDYRQRWRAL  350 (567)
T ss_pred             CC--C---------------------------------------------CCCcchheeeeeccccccCCHHHHHHHHHH
Confidence            00  0                                             00112566554  34689999999999998


Q ss_pred             hCCceec-ccCcccccccccccCC---C----CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCccccc
Q 005874          444 LGAPIGQ-GYGLTETCAGGTFSEV---D----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVG  515 (672)
Q Consensus       444 ~~~~v~~-~YG~TE~~~~~~~~~~---~----~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~g  515 (672)
                      ++..++. .||+||++..++....   .    ....+++|.|+|+++++|+|+++++.+   +.|+.|||+++|++++.|
T Consensus       351 ~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~---~~g~~Gel~v~g~~v~~g  427 (567)
T PRK06178        351 TGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELL---PLGAEGEIVVRTPSLLKG  427 (567)
T ss_pred             hCCcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCCCCcC---CCCCceEEEEECCccccc
Confidence            8887775 7999998765443321   1    123467999999999999995556554   478899999999999999


Q ss_pred             ccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC
Q 005874          516 YFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH  595 (672)
Q Consensus       516 Y~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~  595 (672)
                      |+++++.+++.|     .+|||+|||+|++++||.++++||++|+|+. +|++|+|.+||+++.++++|.+++|++..++
T Consensus       428 Y~~~~~~~~~~~-----~dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~-~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~  501 (567)
T PRK06178        428 YWNKPEATAEAL-----RDGWLHTGDIGKIDEQGFLHYLGRRKEMLKV-NGMSVFPSEVEALLGQHPAVLGSAVVGRPDP  501 (567)
T ss_pred             ccCChhhhhhcc-----cCCceeecceEEEecCCeEEEEecccccEEE-CCEEECHHHHHHHHHhCCCeeEEEEEcCcCc
Confidence            999999998887     5789999999999999999999999999997 6999999999999999999999999997654


Q ss_pred             ---CeEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874          596 ---SYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD  666 (672)
Q Consensus       596 ---~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~  666 (672)
                         +.++++|+++++...+....  ...++++|+.+++|. ++++++.|      +|++||++|++|++++++.
T Consensus       502 ~~g~~~~~~v~~~~~~~~~~~~l--~~~~~~~l~~~~~p~-i~~v~~iP------~t~~GKv~r~~l~~~~~~~  566 (567)
T PRK06178        502 DKGQVPVAFVQLKPGADLTAAAL--QAWCRENMAVYKVPE-IRIVDALP------MTATGKVRKQDLQALAEEL  566 (567)
T ss_pred             ccCcceEEEEEeCCCCcCCHHHH--HHHHHhcCcccCCce-EEEeccCC------CCCccceeHHHHHHHHHhh
Confidence               45888998875432111111  155668999999996 77888876      9999999999999988764

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=4e-60  Score=529.34  Aligned_cols=511  Identities=21%  Similarity=0.217  Sum_probs=390.3

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF  137 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~  137 (672)
                      .|++++|...+..+|+++|+.+            ++.           .+||+||.++++++|..|.+.|+++||+|+++
T Consensus        20 ~~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~   76 (567)
T PLN02479         20 LTPLWFLERAAVVHPTRKSVVH------------GSV-----------RYTWAQTYQRCRRLASALAKRSIGPGSTVAVI   76 (567)
T ss_pred             cCHHHHHHHHHhhCCCceEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            5789999999999999999985            333           68999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCC-------CccEEEEecC
Q 005874          138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLD-------TVKHVICMDA  210 (672)
Q Consensus       138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~-------~l~~ii~~~~  210 (672)
                      ++|+++++++++||+++|++++|+++.++.+++.++++.++++.+|+++...+.+.+....+.       ....++.+..
T Consensus        77 ~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (567)
T PLN02479         77 APNIPAMYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGD  156 (567)
T ss_pred             CCCcHHHHHHHHHHHhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecC
Confidence            999999999999999999999999999999999999999999999999887655544322111       1123344332


Q ss_pred             CCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCC
Q 005874          211 NIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG  290 (672)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~  290 (672)
                      ..... .............|.++................++.++++|||||||.||||++||+++..........+ .++
T Consensus       157 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~~  234 (567)
T PLN02479        157 PTCDP-KSLQYALGKGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIW-GMN  234 (567)
T ss_pred             CcCCc-cccccccccCcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhc-CCC
Confidence            21100 0000000112345666654332111111122334677899999999999999999999877665555556 788


Q ss_pred             CCcEEEEecChHhHHHHHHHHH-HhHhCcEEee--CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHH
Q 005874          291 SKDVYLAYLPLAHVLELVAENL-IAGVGSAIGY--GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRK  367 (672)
Q Consensus       291 ~~d~~l~~~pl~h~~~~~~~~~-~l~~G~~i~~--~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~  367 (672)
                      .+|++++.+|++|.+++...+. .+..|+++++  +++..+.+.           ++++++|++.++|.++..|.+....
T Consensus       235 ~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------l~~~~~t~~~~~P~~~~~l~~~~~~  303 (567)
T PLN02479        235 EGAVYLWTLPMFHCNGWCFTWTLAALCGTNICLRQVTAKAIYSA-----------IANYGVTHFCAAPVVLNTIVNAPKS  303 (567)
T ss_pred             CCCEEEEecchhhhhhHHHHHHHHhhcCceEeccCCCHHHHHHH-----------HHHcCCeEEEecHHHHHHHHhhhhh
Confidence            9999999999999999776543 4667776666  555555555           9999999999999999988764211


Q ss_pred             hhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCc
Q 005874          368 KVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAP  447 (672)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~  447 (672)
                      ...                                              ...++++.++++|+++++++.+.+... +.+
T Consensus       304 ~~~----------------------------------------------~~~~~l~~~~~~G~~~~~~~~~~~~~~-~~~  336 (567)
T PLN02479        304 ETI----------------------------------------------LPLPRVVHVMTAGAAPPPSVLFAMSEK-GFR  336 (567)
T ss_pred             ccc----------------------------------------------ccccceeEEEEcCCCCCHHHHHHHHhc-CCc
Confidence            000                                              011378999999999999999988875 899


Q ss_pred             eecccCcccccccccccCCC----------CCC-CCccCCCcCCeE-EEEEecCCCCcccCCCCCCccEEEEccCccccc
Q 005874          448 IGQGYGLTETCAGGTFSEVD----------DSS-VGRVGAPLPCSF-IKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVG  515 (672)
Q Consensus       448 v~~~YG~TE~~~~~~~~~~~----------~~~-~~~~G~p~~~~~-v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~g  515 (672)
                      +++.||+||+++.++.....          ... ..+.|.+.++++ ++|+|.+++..++ .+.++.|||+++|++++.|
T Consensus       337 ~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~-~~g~~~GEl~v~g~~~~~G  415 (567)
T PLN02479        337 VTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVP-ADGKTMGEIVMRGNMVMKG  415 (567)
T ss_pred             eecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccC-CCCCCceEEEEeccchhhh
Confidence            99999999986554432110          001 135788888876 8899844555443 1112579999999999999


Q ss_pred             ccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC
Q 005874          516 YFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH  595 (672)
Q Consensus       516 Y~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~  595 (672)
                      ||++|+.|++.|     .+|||+|||+|+++++|.++++||.+|+||. +|++|+|.+||+++..||.|.+++|++.+++
T Consensus       416 Y~~~~~~t~~~~-----~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~  489 (567)
T PLN02479        416 YLKNPKANEEAF-----ANGWFHSGDLGVKHPDGYIEIKDRSKDIIIS-GGENISSLEVENVVYTHPAVLEASVVARPDE  489 (567)
T ss_pred             hhcCcccccchh-----cCCceecceeEEEcCCccEEEeccccceEEe-CCEEEcHHHHHHHHHhCcccceeeEEeccch
Confidence            999999999998     5789999999999999999999999999997 6999999999999999999999999998754


Q ss_pred             ---CeEEEEEEcChhHHH---HHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874          596 ---SYCVALVVASQPAVE---EWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       596 ---~~~va~v~~~~~~~~---~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                         ..+++++++.++...   ....+.....+.++|+.|+.|+.+.+. +.|      +|++||++|+.|++.+..
T Consensus       490 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~~-~iP------~t~~gKv~r~~L~~~~~~  558 (567)
T PLN02479        490 RWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVFG-PLP------KTATGKIQKHVLRAKAKE  558 (567)
T ss_pred             hcCceeEEEEEecCcccccchhhhHHHHHHHHHhhcccccCCceEEec-cCC------CCCccCeeHHHHHHHHHh
Confidence               368999987765311   111112225667899999999998874 444      899999999999988665

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.2e-60  Score=518.68  Aligned_cols=452  Identities=23%  Similarity=0.282  Sum_probs=369.0

Q ss_pred             HHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHH
Q 005874           68 CKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVA  147 (672)
Q Consensus        68 a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e~~~~  147 (672)
                      +++.++++|+..            +++           .+||+||.++++++|..|.     ++++|+++++|+++|+++
T Consensus        10 ~~~~~~~~a~~~------------~~~-----------~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~   61 (471)
T PRK07787         10 AAAADIADAVRI------------GGR-----------VLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLA   61 (471)
T ss_pred             hcccCCceEEEe------------CCc-----------EEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHH
Confidence            345788888876            444           7999999999999999996     479999999999999999


Q ss_pred             HHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccccccccCCCeEE
Q 005874          148 LQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKI  227 (672)
Q Consensus       148 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~  227 (672)
                      ++||+++|++++|+++..+.+++.+++++++++.++++....      ...++.+.   .....                
T Consensus        62 ~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~------~~~~~~~~---~~~~~----------------  116 (471)
T PRK07787         62 VVGALIAGVPVVPVPPDSGVAERRHILADSGAQAWLGPAPDD------PAGLPHVP---VRLHA----------------  116 (471)
T ss_pred             HHHHHhcCcEEeecCCCCChHHHHHHHHhcCCCEEEecCCcc------ccccccee---eeccc----------------
Confidence            999999999999999999999999999999999999986311      01111110   00000                


Q ss_pred             EeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEEEecChHhHHHH
Q 005874          228 TSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLEL  307 (672)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~  307 (672)
                                 ..........++++++++|||||||.||||++||+++.+.+..+...+ .+..+|++++.+|++|.+++
T Consensus       117 -----------~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~g~  184 (471)
T PRK07787        117 -----------RSWHRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAW-QWTADDVLVHGLPLFHVHGL  184 (471)
T ss_pred             -----------cccccCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhc-CCCccceeEeccCCeeechh
Confidence                       000011124568999999999999999999999999999988887777 78899999999999999998


Q ss_pred             HH-HHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHH
Q 005874          308 VA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLA  383 (672)
Q Consensus       308 ~~-~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~  383 (672)
                      .. .+.++..|+++++   .++..+.+.           ++ +++|++.++|.++..+.+.....               
T Consensus       185 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~-~~~t~~~~~P~~~~~l~~~~~~~---------------  237 (471)
T PRK07787        185 VLGVLGPLRIGNRFVHTGRPTPEAYAQA-----------LS-EGGTLYFGVPTVWSRIAADPEAA---------------  237 (471)
T ss_pred             HHHHHHHHhcCCEEEecCCCCHHHHHHH-----------Hh-hCceEEEcchHHHHHHHhCcccc---------------
Confidence            87 6778999999998   344444444           88 99999999999998887521000               


Q ss_pred             HHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCcccccccccc
Q 005874          384 YARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTF  463 (672)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~  463 (672)
                                                       ...+++|.+++||+++++++.+.+...++.++++.||+||++...+.
T Consensus       238 ---------------------------------~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~  284 (471)
T PRK07787        238 ---------------------------------RALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLST  284 (471)
T ss_pred             ---------------------------------ccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceec
Confidence                                             01137999999999999999999999899999999999999865544


Q ss_pred             cCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEE
Q 005874          464 SEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVG  543 (672)
Q Consensus       464 ~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg  543 (672)
                      ........+++|.|+++++++|+| +++..++ .+.+..|||+++|++++.||+++++.|++.|.    .+|||+|||+|
T Consensus       285 ~~~~~~~~~~vG~~~~g~~~~i~d-~~~~~~~-~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~----~~~~~~TGDlg  358 (471)
T PRK07787        285 RADGERRPGWVGLPLAGVETRLVD-EDGGPVP-HDGETVGELQVRGPTLFDGYLNRPDATAAAFT----ADGWFRTGDVA  358 (471)
T ss_pred             CCCCcccCCcccccCCCcEEEEEC-CCCCCCC-CCCCCceEEEEECcccchhhcCChhhchhccc----CCCceecCceE
Confidence            433344557899999999999999 5665543 11124799999999999999999999999986    68999999999


Q ss_pred             EEccCceEEEEecC-CCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcChhHHHHHHHHcChh
Q 005874          544 QVHADGCLEIIDRK-KDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQPAVEEWAAKQGIV  619 (672)
Q Consensus       544 ~~~~dG~l~i~gR~-~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~~~~~~~~~~~~~~  619 (672)
                      ++++||.++++||+ +++++. +|++|+|.+||+++..++.|.+++|++.++.   +.++++|++......+...    .
T Consensus       359 ~~~~dg~l~~~GR~~d~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~l~----~  433 (471)
T PRK07787        359 VVDPDGMHRIVGRESTDLIKS-GGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGADDVAADELI----D  433 (471)
T ss_pred             EEcCCCCEEEeCCCCceeEee-CCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCCCCCHHHHH----H
Confidence            99999999999996 789996 6999999999999999999999999998765   4688999874432222222    5


Q ss_pred             hhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHH
Q 005874          620 GKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRK  661 (672)
Q Consensus       620 ~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~  661 (672)
                      .+++.|+.+++|..+++++..|      +|++||++|++|++
T Consensus       434 ~l~~~l~~~~~P~~i~~~~~iP------~~~~GKi~r~~L~~  469 (471)
T PRK07787        434 FVAQQLSVHKRPREVRFVDALP------RNAMGKVLKKQLLS  469 (471)
T ss_pred             HHHhhcccccCCcEEEEeccCC------CCCCccccHHHhcc
Confidence            6678999999999999999887      99999999999975

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=3.8e-59  Score=519.31  Aligned_cols=504  Identities=25%  Similarity=0.339  Sum_probs=390.5

Q ss_pred             CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874           57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI  136 (672)
Q Consensus        57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i  136 (672)
                      ..|+.++|+++++.+|+++|+..            +++           .+||.||.++++++|.+|.+.|+.+|++|++
T Consensus        20 ~~~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i   76 (541)
T TIGR03205        20 RGTLPDLLSKAAADYGPRPALEF------------RDR-----------PITYTELEAMAETAAAALLRAGYGKDASVAL   76 (541)
T ss_pred             CCCHHHHHHHHHHHcCCCceEEE------------CCc-----------EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            45899999999999999999986            333           6999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccc--hHHHHhhhcCCCCccEEEEecCCCcc
Q 005874          137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKE--LKKLVDLSGQLDTVKHVICMDANIPS  214 (672)
Q Consensus       137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~--~~~l~~~~~~~~~l~~ii~~~~~~~~  214 (672)
                      +++|+++++++++||+++|++++|+++..+.+++.++++.++++.+|+++..  ...+.+.... ..+..+++.+.....
T Consensus        77 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  155 (541)
T TIGR03205        77 YLGNTPDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK-GLLDRLIVCEDDNWG  155 (541)
T ss_pred             ECCCChHHHHHHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc-ccceEEEEecccccc
Confidence            9999999999999999999999999999999999999999999999998631  1222222111 123344444332111


Q ss_pred             cccc--cccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhc-----C
Q 005874          215 AVSS--VEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV-----P  287 (672)
Q Consensus       215 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~  287 (672)
                      ....  ..........+++++...... +.......++++++++|||||||.||||+++|+++.+..... ..+     .
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~  233 (541)
T TIGR03205       156 KVGTPQAPIPADPRIVTYADFVKGAAA-PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRA  233 (541)
T ss_pred             cccccccccCCCcccccHHHHHhcCCC-CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-Hhhcccccc
Confidence            0000  000012234556666543221 112234567899999999999999999999999988755432 111     0


Q ss_pred             CCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeC---CcccccCchhhhhcccccccccccceeeecchHHHHHHHH
Q 005874          288 DLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG---TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRD  363 (672)
Q Consensus       288 ~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~---~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~  363 (672)
                      .....+++++.+|++|.+++.. .+.++..|+++.+.   ++..+.+.           ++++++|++.++|.++..+.+
T Consensus       234 ~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~  302 (541)
T TIGR03205       234 TRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRD-----------IEEKRATVFPGVPTMWIALAN  302 (541)
T ss_pred             cCCCCceEEEeccHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHH-----------HHHcCCeEeechHHHHHHHHh
Confidence            2234579999999999999776 56678999998873   34444444           999999999999999988764


Q ss_pred             HHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHH
Q 005874          364 GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC  443 (672)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~  443 (672)
                      ....                                               +....+++|.+++||+++++++.+++.+.
T Consensus       303 ~~~~-----------------------------------------------~~~~~~~l~~i~~gg~~~~~~~~~~~~~~  335 (541)
T TIGR03205       303 DPSL-----------------------------------------------EKRDLSSLATIGSGGAPLPVEVANFFERK  335 (541)
T ss_pred             Cccc-----------------------------------------------cccCccccceEEEccccCCHHHHHHHHHH
Confidence            2100                                               00011379999999999999999999998


Q ss_pred             hCCceecccCcccccccccccCC-CCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchh
Q 005874          444 LGAPIGQGYGLTETCAGGTFSEV-DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEK  522 (672)
Q Consensus       444 ~~~~v~~~YG~TE~~~~~~~~~~-~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~  522 (672)
                      ++.++++.||+||++..++.... .....+++|.|+++++++|++.++.+..  ++.|+.|||+++|++++.||+++|+.
T Consensus       336 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~~~--~~~g~~Gel~v~~~~~~~gy~~~~~~  413 (541)
T TIGR03205       336 TGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKV--LPPGEVGELRIRGPNVTRGYWNRPEE  413 (541)
T ss_pred             hCCCeecccccccCCcccccCCCCCCCCCCCcceeccCceeEEEecCCCCcc--CCCCCeeEEEEecCCccccccCChhh
Confidence            89999999999999876654432 2234578999999999998764433322  35788999999999999999999999


Q ss_pred             hhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEE
Q 005874          523 TKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCV  599 (672)
Q Consensus       523 t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~v  599 (672)
                      +++.|     .++||+|||+|++++||.++++||.+|+||. +|++|+|.+||+++.+|++|.+++|++.+++   +.++
T Consensus       414 ~~~~~-----~~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~  487 (541)
T TIGR03205       414 SAEAF-----VGDRFLTGDIGYMDTDGYFFLVDRKKDMIIS-GGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAK  487 (541)
T ss_pred             hHhhh-----ccCCcccCceEEEcCCceEEEEccccCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEE
Confidence            99888     5689999999999999999999999999996 6999999999999999999999999997654   3588


Q ss_pred             EEEEcChhHH-HHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHH
Q 005874          600 ALVVASQPAV-EEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIR  660 (672)
Q Consensus       600 a~v~~~~~~~-~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~  660 (672)
                      ++++++++.. .+...  ....++++|+.|++|+.|.++++.|      +|++||++|++|+
T Consensus       488 ~~v~~~~~~~~~~~~~--l~~~~~~~l~~~~~P~~i~~~~~iP------~t~~gK~~r~~l~  541 (541)
T TIGR03205       488 AFVKLRPGAKPFSLDE--LRAFLAGKLGKHELPVAVEFVDELP------RTPVGKLSRHELR  541 (541)
T ss_pred             EEEEECCCCCcCCHHH--HHHHHHhhcccccCCcEEEEeccCC------CCcccceeHhhcC
Confidence            8888765421 11111  1156678999999999999999987      9999999999874

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.3e-59  Score=525.55  Aligned_cols=509  Identities=25%  Similarity=0.325  Sum_probs=390.2

Q ss_pred             CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874           57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI  136 (672)
Q Consensus        57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i  136 (672)
                      .+++.++|.+.+..+|+++|+..            +++           .+||+||.+++.++|.+|.+.|+++|++|++
T Consensus        23 ~~~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i   79 (563)
T PRK06710         23 IQPLHKYVEQMASRYPEKKALHF------------LGK-----------DITFSVFHDKVKRFANYLQKLGVEKGDRVAI   79 (563)
T ss_pred             cccHHHHHHHHHHHCCCceEEEe------------cCe-----------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            46899999999999999999986            444           6999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCC----
Q 005874          137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANI----  212 (672)
Q Consensus       137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~----  212 (672)
                      +++|+.++++++|||+++|++++|++|..+.+++.++++.++++.+++++.....+...... .....++......    
T Consensus        80 ~~~~~~~~~~~~lA~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  158 (563)
T PRK06710         80 MLPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSA-TKIEHVIVTRIADFLPF  158 (563)
T ss_pred             ECCCChHHHHHHHHHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchh-hccceeEEecccccccc
Confidence            99999999999999999999999999999999999999999999999998765544433221 1122222211000    


Q ss_pred             cccc--ccccc---------CCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHH
Q 005874          213 PSAV--SSVEQ---------SGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA  281 (672)
Q Consensus       213 ~~~~--~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~  281 (672)
                      +...  .....         ........|..+.... ...........+++++++|||||||.||+|.+||++++.....
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~  237 (563)
T PRK06710        159 PKNLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEV-NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLM  237 (563)
T ss_pred             ccccccchhhcccccccccccccchhhhhhhhhhcc-ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHH
Confidence            0000  00000         0000001122221111 1111111223578999999999999999999999999865443


Q ss_pred             HHhhcCCC-CCCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeC---CcccccCchhhhhcccccccccccceeeecchH
Q 005874          282 VMTIVPDL-GSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG---TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPA  356 (672)
Q Consensus       282 ~~~~~~~~-~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~---~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~  356 (672)
                      ....+... ..++++++.+|++|.+++.. .+.++..|+++++.   ++..+.+.           ++++++|++.++|+
T Consensus       238 ~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~  306 (563)
T PRK06710        238 GVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEA-----------IKKHKVTLFPGAPT  306 (563)
T ss_pred             HHhhccCCCCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHH-----------HHHcCCeEEeccHH
Confidence            33322133 34568899999999999866 45678899999883   33333333           99999999999999


Q ss_pred             HHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHH
Q 005874          357 ILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADT  436 (672)
Q Consensus       357 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~  436 (672)
                      ++..+.......                                               ....+++|.+++||+++++++
T Consensus       307 ~~~~l~~~~~~~-----------------------------------------------~~~~~~lr~v~~gg~~~~~~~  339 (563)
T PRK06710        307 IYIALLNSPLLK-----------------------------------------------EYDISSIRACISGSAPLPVEV  339 (563)
T ss_pred             HHHHHHcCCccc-----------------------------------------------cCChhhhhheeeCCCcCCHHH
Confidence            998876521100                                               001137899999999999999


Q ss_pred             HHHHHHHhCCceecccCcccccccccccCC-CCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCccccc
Q 005874          437 QRFINICLGAPIGQGYGLTETCAGGTFSEV-DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVG  515 (672)
Q Consensus       437 ~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~-~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~g  515 (672)
                      .+++...+++++++.||+||++..+..... .....+++|.|.++++++++|.+++..+   +.|+.|||+++|+.++.|
T Consensus       340 ~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~---~~g~~Gel~v~g~~~~~g  416 (563)
T PRK06710        340 QEKFETVTGGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEAL---PPGEIGEIVVKGPQIMKG  416 (563)
T ss_pred             HHHHHHhhCCCEecccccccCccccccCcccccccCCccCCCCCCCeEEEEECCCCccC---CCCCceEEEEecCccchh
Confidence            999999889999999999999876543322 2233478999999999999995555444   578899999999999999


Q ss_pred             ccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC
Q 005874          516 YFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH  595 (672)
Q Consensus       516 Y~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~  595 (672)
                      |+++++.+...|     .+|||+|||+|+++++|.++++||.+|+|++ +|++|+|.+||+++.++|.|.+++|++.+++
T Consensus       417 Y~~~~~~~~~~~-----~~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~  490 (563)
T PRK06710        417 YWNKPEETAAVL-----QDGWLHTGDVGYMDEDGFFYVKDRKKDMIVA-SGFNVYPREVEEVLYEHEKVQEVVTIGVPDP  490 (563)
T ss_pred             hhCChHHHhhhc-----ccCcccccceEEEcCCCcEEEeeccccEEEE-CCEEECHHHHHHHHHhCcceeeEEEEccccC
Confidence            999999998888     6789999999999999999999999999997 6999999999999999999999999997654


Q ss_pred             ---CeEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874          596 ---SYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       596 ---~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                         +.++++|++.++...+....  ...+.+.|+.+++|..+.++++.|      +|++||++|++|++++..
T Consensus       491 ~~g~~~~~~v~~~~~~~~~~~~l--~~~~~~~l~~~~~P~~~~~v~~iP------~t~~GKi~r~~L~~~~~~  555 (563)
T PRK06710        491 YRGETVKAFVVLKEGTECSEEEL--NQFARKYLAAYKVPKVYEFRDELP------KTTVGKILRRVLIEEEKR  555 (563)
T ss_pred             CcCceeEEEEEECCCCCCCHHHH--HHHHHHhcccccCCcEEEEcccCC------CCccchhhHHHHHHHHhh
Confidence               45888888776532111111  145668899999999999999987      999999999999998754

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=1.4e-59  Score=525.18  Aligned_cols=508  Identities=25%  Similarity=0.350  Sum_probs=394.0

Q ss_pred             CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHH-hcCCCCCCEEE
Q 005874           57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLA-QLGHKKEERVA  135 (672)
Q Consensus        57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~-~~g~~~g~~V~  135 (672)
                      ..++.++|.+.++.+|+++|+..            .|+           .+||+||.+++.++|..|. +.|+++|++|+
T Consensus        24 ~~~~~~~l~~~~~~~~~~~a~~~------------~~~-----------~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~   80 (560)
T PRK08751         24 FRTVAEVFATSVAKFADRPAYHS------------FGK-----------TITYREADQLVEQFAAYLLGELQLKKGDRVA   80 (560)
T ss_pred             CCcHHHHHHHHHHhCCCCceEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHHhCCCCCCEEE
Confidence            46899999999999999999986            444           6999999999999999997 57999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCc-c
Q 005874          136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIP-S  214 (672)
Q Consensus       136 i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~-~  214 (672)
                      ++++|+++++++++||+++|++++|++|.++.+++.+++++++++.+++++.....+.+.....+ ...++....... .
T Consensus        81 i~~~~~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  159 (560)
T PRK08751         81 LMMPNCLQYPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTP-VKQVITTGLGDMLG  159 (560)
T ss_pred             EECCCCHHHHHHHHHHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCC-ccEEEEechhhhcc
Confidence            99999999999999999999999999999999999999999999999999887766665544433 233333221000 0


Q ss_pred             ---c----------ccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHH
Q 005874          215 ---A----------VSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA  281 (672)
Q Consensus       215 ---~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~  281 (672)
                         .          ..............+.+..........+.....++++++++|||||||.||||++||.++...+..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~  239 (560)
T PRK08751        160 FPKAALVNFVVKYVKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQ  239 (560)
T ss_pred             cccchhhhhhhhhhhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHH
Confidence               0          000000000112345555444332222334456789999999999999999999999999887776


Q ss_pred             HHhhcC---CCCC-CcEEEEecChHhHHHHHH-HHHHhHhCcEEee-CCcccccCchhhhhcccccccccccceeeecch
Q 005874          282 VMTIVP---DLGS-KDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY-GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVP  355 (672)
Q Consensus       282 ~~~~~~---~~~~-~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~-~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P  355 (672)
                      ....+.   .+.. ++++++.+|++|.+++.. .+.++..|+++++ .++...        ..++..++++++|++.++|
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~i~~~~~t~~~~~p  311 (560)
T PRK08751        240 AHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDM--------PGFVKELKKTRFTAFTGVN  311 (560)
T ss_pred             HHHhhccccccCCCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCH--------HHHHHHHHhcceeEecChH
Confidence            555431   1333 467889999999999765 4556667776665 322211        1123339999999999999


Q ss_pred             HHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHH
Q 005874          356 AILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSAD  435 (672)
Q Consensus       356 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~  435 (672)
                      .++..+.+....  .                                             +...+++|.+++||++++++
T Consensus       312 ~~~~~l~~~~~~--~---------------------------------------------~~~l~~lr~v~~gG~~~~~~  344 (560)
T PRK08751        312 TLFNGLLNTPGF--D---------------------------------------------QIDFSSLKMTLGGGMAVQRS  344 (560)
T ss_pred             HHHHHHHcCcCc--C---------------------------------------------CcchhhheeeeeCCCCCCHH
Confidence            999887652100  0                                             00113799999999999999


Q ss_pred             HHHHHHHHhCCceecccCcccccccccccCCC-CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccc
Q 005874          436 TQRFINICLGAPIGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTV  514 (672)
Q Consensus       436 ~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~  514 (672)
                      +.+.+++.+++++++.||+||++..++..... ....+++|.|.++++++++| +++..+   +.|..|||+++|+.++.
T Consensus       345 ~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~~---~~g~~Gel~v~~~~~~~  420 (560)
T PRK08751        345 VAERWKQVTGLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIPSTDACIKD-DAGTVL---AIGEIGELCIKGPQVMK  420 (560)
T ss_pred             HHHHHHHHhCCeEEEeeccccCCCceecccccccccCCCcCccCCCceEEEEC-CCCCCC---CCCCceEEEEecCccch
Confidence            99999998899999999999998766544322 23347899999999999999 666654   47789999999999999


Q ss_pred             cccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCC
Q 005874          515 GYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPF  594 (672)
Q Consensus       515 gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~  594 (672)
                      ||+++++.+++.|.    .+|||+|||+|+++++|.+++.||.+|+|++ +|++|+|.+||+++..+++|.+++|++.++
T Consensus       421 gy~~~~~~~~~~~~----~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~  495 (560)
T PRK08751        421 GYWKRPEETAKVMD----ADGWLHTGDIARMDEQGFVYIVDRKKDMILV-SGFNVYPNEIEDVIAMMPGVLEVAAVGVPD  495 (560)
T ss_pred             hhcCChhhhhhccc----cCCCccccceEEEcCCceEEEEeechhheeE-CCEEEcHHHHHHHHHhCcCeeeeEEEecCC
Confidence            99999999998886    7899999999999999999999999999998 599999999999999999999999999765


Q ss_pred             C---CeEEEEEEcChhHH-HHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHH
Q 005874          595 H---SYCVALVVASQPAV-EEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKA  662 (672)
Q Consensus       595 ~---~~~va~v~~~~~~~-~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~  662 (672)
                      .   +.++++++.+.... .+...    ..+.++|+.+++|+.+++++..|      +|++||++|++|++.
T Consensus       496 ~~~ge~~~~~v~~~~~~~~~~~l~----~~~~~~l~~~~~P~~v~~v~~lP------~t~~gKv~r~~L~~~  557 (560)
T PRK08751        496 EKSGEIVKVVIVKKDPALTAEDVK----AHARANLTGYKQPRIIEFRKELP------KTNVGKILRRELRDA  557 (560)
T ss_pred             CCCCceEEEEEEcCCCCCCHHHHH----HHHHHhhhhccCCeEEEEhhhCC------CCccccccHHHHHHh
Confidence            4   34666666543221 11111    45567899999999999999887      999999999999875

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-59  Score=519.55  Aligned_cols=474  Identities=21%  Similarity=0.232  Sum_probs=376.6

Q ss_pred             CCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 005874           56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA  135 (672)
Q Consensus        56 ~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~  135 (672)
                      ...++.+.|.+++..+||++|+..            ++.           .+||+|+.++++++|.+|.+.|+++|++|+
T Consensus        33 ~~~~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~lTy~el~~~~~~la~~L~~~gi~~g~~V~   89 (516)
T PRK13383         33 GGTNPYTLLAVTAARWPGRTAIID------------DDG-----------ALSYRELQRATESLARRLTRDGVAPGRAVG   89 (516)
T ss_pred             cCCcHHHHHHHHHHHCCCCcEEEe------------CCC-----------cEeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence            457899999999999999999975            333           599999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCccc
Q 005874          136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSA  215 (672)
Q Consensus       136 i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~  215 (672)
                      ++++|++++++++|||+.+|++++|+++.++.+++.++++.++++.++++++....+.....      .++.++....  
T Consensus        90 i~~~~~~~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~------~~~~~~~~~~--  161 (516)
T PRK13383         90 VMCRNGRGFVTAVFAVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADD------AVAVIDPATA--  161 (516)
T ss_pred             EECCCCHHHHHHHHHHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhc------ceEEeccchh--
Confidence            99999999999999999999999999999999999999999999999999876655443211      1222211100  


Q ss_pred             ccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHH--HHHHHHhhcCCCCCCc
Q 005874          216 VSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLA--TVSAVMTIVPDLGSKD  293 (672)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~--~~~~~~~~~~~~~~~d  293 (672)
                                      ...    ..  ...+...++.++|+|||||||.||||+++|.....  ........+ .+..+|
T Consensus       162 ----------------~~~----~~--~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~~~d  218 (516)
T PRK13383        162 ----------------GAE----ES--GGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRT-RLRTGS  218 (516)
T ss_pred             ----------------hhh----cC--CCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhh-ccCCCC
Confidence                            000    00  01112235667999999999999999999974321  112222334 788899


Q ss_pred             EEEEecChHhHHHHHHHHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhh
Q 005874          294 VYLAYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD  370 (672)
Q Consensus       294 ~~l~~~pl~h~~~~~~~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~  370 (672)
                      +++..+|++|.+++...+.++..|+++++   +++..+++.           ++++++|.+.++|.++..+.+.......
T Consensus       219 ~~~~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~  287 (516)
T PRK13383        219 RISVAMPMFHGLGLGMLMLTIALGGTVLTHRHFDAEAALAQ-----------ASLHRADAFTAVPVVLARILELPPRVRA  287 (516)
T ss_pred             eEEEecCCcchhhHHHHHHHHhcCCEEEECCCCCHHHHHHH-----------HHHhCCcEEEecHHHHHHHHhccccccc
Confidence            99999999999999888888999999987   444444444           8999999999999999888753211000


Q ss_pred             hcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceec
Q 005874          371 AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQ  450 (672)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~  450 (672)
                                                                   ....+++|.+++||+++++++.+.|.+.++.++++
T Consensus       288 ---------------------------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~  322 (516)
T PRK13383        288 ---------------------------------------------RNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYN  322 (516)
T ss_pred             ---------------------------------------------cCCCCceEEEEECCCCCCHHHHHHHHHHcCchhhh
Confidence                                                         00113799999999999999999999999999999


Q ss_pred             ccCcccccccccccCCC-CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhccc
Q 005874          451 GYGLTETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV  529 (672)
Q Consensus       451 ~YG~TE~~~~~~~~~~~-~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~  529 (672)
                      .||+||++..+...... ....+++|.|+|+++++|+| +++..+   ++|+.|||+++|+.++.||++++.   +.+  
T Consensus       323 ~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~---~~g~~Gel~v~g~~~~~~Y~~~~~---~~~--  393 (516)
T PRK13383        323 GYGSTEVGIGALATPADLRDAPETVGKPVAGCPVRILD-RNNRPV---GPRVTGRIFVGGELAGTRYTDGGG---KAV--  393 (516)
T ss_pred             cccccccccceeccccccccCCCcccCCCCCcEEEEEC-CCCCCC---CCCCceEEEEecCcccccccCCch---hhe--
Confidence            99999998654433222 23357899999999999999 666543   478899999999999999998764   222  


Q ss_pred             CCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcCh
Q 005874          530 DDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQ  606 (672)
Q Consensus       530 ~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~  606 (672)
                         .+|||+|||+|++|++|.+++.||++|+||+ +|++|+|.+||++|.+||.|.+++|++..+.   +.++++|++.+
T Consensus       394 ---~~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~  469 (516)
T PRK13383        394 ---VDGMTSTGDMGYLDNAGRLFIVGREDDMIIS-GGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHP  469 (516)
T ss_pred             ---ecCceecceeEEEcCCccEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECC
Confidence               5789999999999999999999999999997 6999999999999999999999999997644   45888888765


Q ss_pred             hHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHH
Q 005874          607 PAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIR  660 (672)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~  660 (672)
                      ....+...  ....+.++|+.|++|..+.++++.|      +|++||++|++|.
T Consensus       470 ~~~~~~~~--l~~~~~~~l~~~~~p~~i~~v~~iP------~t~~gKi~r~~L~  515 (516)
T PRK13383        470 GSGVDAAQ--LRDYLKDRVSRFEQPRDINIVSSIP------RNPTGKVLRKELP  515 (516)
T ss_pred             CCCCCHHH--HHHHHHHhcccCCCCcEEEEeCCCC------CCCCCcCcHHHhC
Confidence            43211111  1155667899999999999999887      9999999999874

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=1.3e-59  Score=508.31  Aligned_cols=425  Identities=20%  Similarity=0.208  Sum_probs=347.2

Q ss_pred             eeHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEEC
Q 005874          107 LTYGQAFETICNFASGLAQLGH-KKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICG  185 (672)
Q Consensus       107 ~Ty~el~~~a~~la~~L~~~g~-~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~  185 (672)
                      +.|+||.++++++|++|.+.|+ .+|++|+++++|+++++++++||+++|++++|+++.++.+++.++++++++++++++
T Consensus        20 ~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~   99 (452)
T PRK07445         20 YNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGL   99 (452)
T ss_pred             cChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEec
Confidence            6899999999999999999988 579999999999999999999999999999999999999999999999999999987


Q ss_pred             ccchHHHHhhhcCCCCccEEEEecCCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCC
Q 005874          186 SKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLP  265 (672)
Q Consensus       186 ~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~P  265 (672)
                      ++.....               .. .   .                         ........+++.++++|||||||.|
T Consensus       100 ~~~~~~~---------------~~-~---~-------------------------~~~~~~~~~~~~~~i~~TSGTTG~P  135 (452)
T PRK07445        100 DQLKLSH---------------PP-P---L-------------------------PSQGILPNLETGWIMIPTGGSSGQI  135 (452)
T ss_pred             Ccccccc---------------CC-C---C-------------------------CccccCCCCCCcEEEEeCCCCCCCC
Confidence            6532100               00 0   0                         0001113468999999999999999


Q ss_pred             ceEEeehHHHHHHHHHHHhhcCCCCCCcEEEEecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhccccccccc
Q 005874          266 KGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASV  345 (672)
Q Consensus       266 KgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~  345 (672)
                      |||++||+++++.+......+ .+.+ ++.++.+|++|.+++...+.++..|+++++.+...+...        ......
T Consensus       136 KgV~~t~~~l~~~~~~~~~~~-~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~--------~~~~~~  205 (452)
T PRK07445        136 RFAIHTWETLTASVQGFQRYF-QLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSG--------QELPPN  205 (452)
T ss_pred             cEEEechHHHHHHHHHHHHHh-cCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccch--------hhhhhh
Confidence            999999999998888777766 6654 467889999999999888889999999998542222211        001346


Q ss_pred             ccceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEE
Q 005874          346 LRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFI  425 (672)
Q Consensus       346 ~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i  425 (672)
                      +++|++.++|.++..+.+....                                                  ..+++|.+
T Consensus       206 ~~~t~~~~vP~~l~~l~~~~~~--------------------------------------------------~l~~l~~i  235 (452)
T PRK07445        206 PSDFFLSLVPTQLQRLLQLRPQ--------------------------------------------------WLAQFRTI  235 (452)
T ss_pred             cCceEEEehHHHHHHHHhhChh--------------------------------------------------hhhcceEE
Confidence            7889999999999988651000                                                  01389999


Q ss_pred             EEcCCCCCHHHHHHHHHHhCCceecccCcccccccccccCCCC--CCCCccCCCcCCeEEEEEecCCCCcccCCCCCCcc
Q 005874          426 LSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDD--SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRG  503 (672)
Q Consensus       426 ~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~--~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~G  503 (672)
                      ++||+++++++.+.++. +++++++.||+||++..++.....+  ...+++|.|.|+++++|++            ++.|
T Consensus       236 ~~gG~~l~~~~~~~~~~-~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~~------------g~~G  302 (452)
T PRK07445        236 LLGGAPAWPSLLEQARQ-LQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIPA------------NQTG  302 (452)
T ss_pred             EECCccCCHHHHHHHHh-cCCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEcC------------CCcc
Confidence            99999999999988876 4899999999999976554433322  2346899999999999972            3579


Q ss_pred             EEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcc
Q 005874          504 EIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPY  583 (672)
Q Consensus       504 Ei~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~  583 (672)
                      ||+|+||+++.||++++.      .    .+|||+|||+|++|+||.|++.||+||+||. +|++|+|.+||+++.+||+
T Consensus       303 el~v~g~~~~~gY~~~~~------~----~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~-~G~~V~p~eIE~~l~~~p~  371 (452)
T PRK07445        303 NITIQAQSLALGYYPQIL------D----SQGIFETDDLGYLDAQGYLHILGRNSQKIIT-GGENVYPAEVEAAILATGL  371 (452)
T ss_pred             eEEEeCCccchhhcCCcc------C----CCCEEECCCEEEEcCCCCEEEEeecCCEEEE-CCEEECHHHHHHHHHhCCC
Confidence            999999999999997532      1    5789999999999999999999999999996 6999999999999999999


Q ss_pred             cceEEEEecCCC---CeEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHH
Q 005874          584 VDNIMMHADPFH---SYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIR  660 (672)
Q Consensus       584 V~~~~V~g~~~~---~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~  660 (672)
                      |.+|+|++.+++   +.++|++++++.... ..  .....+.++|+.|++|+.++++++.|      +|++||++|++|+
T Consensus       372 V~~a~V~g~~~~~~g~~~~a~vv~~~~~~~-~~--~l~~~~~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~  442 (452)
T PRK07445        372 VQDVCVLGLPDPHWGEVVTAIYVPKDPSIS-LE--ELKTAIKDQLSPFKQPKHWIPVPQLP------RNPQGKINRQQLQ  442 (452)
T ss_pred             cceEEEEeccCcCCCcEEEEEEEeCCCCCC-HH--HHHHHHHHhCCcccCCeEEEEecCCC------CCCCcccCHHHHH
Confidence            999999998765   358999987655321 11  11156678999999999999999987      9999999999999


Q ss_pred             HHHHHHHH
Q 005874          661 KAFADDLA  668 (672)
Q Consensus       661 ~~~~~~i~  668 (672)
                      +.|.++|+
T Consensus       443 ~~~~~~~~  450 (452)
T PRK07445        443 QIAVQRLG  450 (452)
T ss_pred             HHHHHhhC
Confidence            99999875

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.8e-59  Score=511.15  Aligned_cols=444  Identities=24%  Similarity=0.290  Sum_probs=369.4

Q ss_pred             HHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH
Q 005874           64 FEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAE  143 (672)
Q Consensus        64 ~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e  143 (672)
                      ++..++++|+++|+..            +++           .+||.||.++++++|..|.+.|+.+|++|+++++|+++
T Consensus         9 ~~~~a~~~~~~~a~~~------------~~~-----------~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~   65 (458)
T PRK09029          9 WRHWAQVRPQAIALRL------------NDE-----------VLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPE   65 (458)
T ss_pred             HHHHHHhCCCceeeec------------CCc-----------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHH
Confidence            3566889999999975            444           69999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccccccccCC
Q 005874          144 WFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSG  223 (672)
Q Consensus       144 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~  223 (672)
                      ++++++||+++|++++|+++..+.+++..++++++++.++++++... +..       +....                 
T Consensus        66 ~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~-------~~~~~-----------------  120 (458)
T PRK09029         66 TLLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSA-------LTSLH-----------------  120 (458)
T ss_pred             HHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhh-------ccccc-----------------
Confidence            99999999999999999999999999999999999999999876432 110       00000                 


Q ss_pred             CeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEEEecChHh
Q 005874          224 RWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAH  303 (672)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h  303 (672)
                            ..      ...........++++++++|||||||.||||++||++++..+......+ ++.++|+++..+|++|
T Consensus       121 ------~~------~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~h  187 (458)
T PRK09029        121 ------LQ------LVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLM-PFTAQDSWLLSLPLFH  187 (458)
T ss_pred             ------cc------cccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcC-CCCccceEEEecCcHh
Confidence                  00      0000112234578899999999999999999999999999988887777 8899999999999999


Q ss_pred             HHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHH
Q 005874          304 VLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLA  383 (672)
Q Consensus       304 ~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~  383 (672)
                      .+++...+.++..|+++++.+...+.+.           +  .++|.+..+|+++..+......                
T Consensus       188 ~~g~~~~~~~l~~G~~v~~~~~~~~~~~-----------i--~~~t~~~~~P~~~~~l~~~~~~----------------  238 (458)
T PRK09029        188 VSGQGIVWRWLYAGATLVVRDKQPLEQA-----------L--AGCTHASLVPTQLWRLLDNRSE----------------  238 (458)
T ss_pred             hhhhHHHHHHHhCCceEEeCChHHHHHH-----------H--hhceeeecChHHHHHHHhcccc----------------
Confidence            9998777788999999998554444333           4  3789999999999887653110                


Q ss_pred             HHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCcccccccccc
Q 005874          384 YARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTF  463 (672)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~  463 (672)
                                                         ..++|.+++||+++++.+.+.++.. +++++++||+||++...+.
T Consensus       239 -----------------------------------~~~l~~i~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~  282 (458)
T PRK09029        239 -----------------------------------PLSLKAVLLGGAAIPVELTEQAEQQ-GIRCWCGYGLTEMASTVCA  282 (458)
T ss_pred             -----------------------------------CCcceEEEECCCCCCHHHHHHHHHc-CCcEeccccccccCcceec
Confidence                                               1269999999999999999998864 9999999999999865543


Q ss_pred             cCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEE
Q 005874          464 SEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVG  543 (672)
Q Consensus       464 ~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg  543 (672)
                      ....  ...++|.|+++++++|++               |||+++|+.++.||+++++.+....     .+|||+|||+|
T Consensus       283 ~~~~--~~~~~G~~~~~~~~~i~~---------------gel~v~g~~~~~gY~~~~~~~~~~~-----~~~~~~TGD~~  340 (458)
T PRK09029        283 KRAD--GLAGVGSPLPGREVKLVD---------------GEIWLRGASLALGYWRQGQLVPLVN-----DEGWFATRDRG  340 (458)
T ss_pred             cCCC--CCCCCCCCCCCCEEEEeC---------------CEEEEecCceeeeeecCcccccccc-----CCCccCCCCcE
Confidence            3322  235699999999999987               8999999999999999988875433     67999999999


Q ss_pred             EEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcChhHHHHHHHHcChhh
Q 005874          544 QVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQPAVEEWAAKQGIVG  620 (672)
Q Consensus       544 ~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~~~~~~~~~~~~~~~  620 (672)
                      ++| ||.+++.||++|+||+ +|++|+|.+||+++.++|+|.+++|++.+++   +.++++|+++.........    ..
T Consensus       341 ~~~-~g~l~~~gR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~l~----~~  414 (458)
T PRK09029        341 EWQ-NGELTILGRLDNLFFS-GGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSEAAVVNLA----EW  414 (458)
T ss_pred             EEe-CCEEEEecccccceee-CCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCcccCHHHHH----HH
Confidence            999 9999999999999997 5999999999999999999999999998766   3588999877433222222    66


Q ss_pred             hhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHHH
Q 005874          621 KNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDL  667 (672)
Q Consensus       621 ~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i  667 (672)
                      ++++|+.|++|..+++++..|      +|.+||++|+.|+++.++..
T Consensus       415 ~~~~l~~~~~P~~~~~~~~~p------~t~~gKi~r~~L~~~~~~~~  455 (458)
T PRK09029        415 LQDKLARFQQPVAYYLLPPEL------KNGGIKISRQALKEWVAQQL  455 (458)
T ss_pred             HHhhchhccCCeEEEEecccc------cCcCCCcCHHHHHHHHHhcc
Confidence            778999999999999999876      99999999999999887653

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=3.9e-60  Score=623.14  Aligned_cols=489  Identities=23%  Similarity=0.289  Sum_probs=399.5

Q ss_pred             CCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 005874           56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA  135 (672)
Q Consensus        56 ~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~  135 (672)
                      ...+++++|+++++.+||++|+.+            ++.           .+||+||.++++++|++|.++|+++|++|+
T Consensus      1129 ~~~~l~~~~~~~a~~~p~~~Al~~------------~~~-----------~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~ 1185 (4334)
T PRK05691       1129 AQAWLPELLNEQARQTPERIALVW------------DGG-----------SLDYAELHAQANRLAHYLRDKGVGPDVCVA 1185 (4334)
T ss_pred             ccCCHHHHHHHHHHhCCCCeEEEE------------CCc-----------eEeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            346899999999999999999986            333           699999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCccc
Q 005874          136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSA  215 (672)
Q Consensus       136 i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~  215 (672)
                      ++++|++++++++|||+++|++++|+++.++.+++.++++++++++++++......+...    .... .+..+..    
T Consensus      1186 i~~~~s~~~iv~~lailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~----~~~~-~~~~~~~---- 1256 (4334)
T PRK05691       1186 IAAERSPQLLVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQA----EGVS-AIALDSL---- 1256 (4334)
T ss_pred             EEeCCCHHHHHHHHHHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccc----cCce-EEeeccc----
Confidence            999999999999999999999999999999999999999999999999998655433211    1111 1111110    


Q ss_pred             ccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEE
Q 005874          216 VSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY  295 (672)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~  295 (672)
                                        .........+.....++++++++|||||||.||||+++|+++++.+.+....+ .++++|++
T Consensus      1257 ------------------~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~ 1317 (4334)
T PRK05691       1257 ------------------HLDSWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATY-ALDDSDVL 1317 (4334)
T ss_pred             ------------------cccccCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhc-CCCCCCEE
Confidence                              00000011112234578999999999999999999999999999998888888 89999999


Q ss_pred             EEecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCch
Q 005874          296 LAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGL  375 (672)
Q Consensus       296 l~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~  375 (672)
                      +++.|++|..++..++.+|..|+++++.++....+.     ..+...++++++|++.++|++++.+.+....        
T Consensus      1318 l~~~~~~fd~s~~~~~~~L~~G~~l~i~~~~~~~~~-----~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~-------- 1384 (4334)
T PRK05691       1318 MQKAPISFDVSVWECFWPLITGCRLVLAGPGEHRDP-----QRIAELVQQYGVTTLHFVPPLLQLFIDEPLA-------- 1384 (4334)
T ss_pred             EEeCCccHHHHHHHHHHHHhCCCEEEEcCccccCCH-----HHHHHHHHHcCCeEEECcHHHHHHHHhCccc--------
Confidence            999999999999889999999999999443222111     1122238999999999999999988652110        


Q ss_pred             hHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCceecccCc
Q 005874          376 SKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQGYGL  454 (672)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~  454 (672)
                                                               ...++||.+++||+++++++.+.+...+ +++++|.||+
T Consensus      1385 -----------------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~ 1423 (4334)
T PRK05691       1385 -----------------------------------------AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGP 1423 (4334)
T ss_pred             -----------------------------------------ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCc
Confidence                                                     0113899999999999999999998876 6889999999


Q ss_pred             ccccccccccC--CCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCC-
Q 005874          455 TETCAGGTFSE--VDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDD-  531 (672)
Q Consensus       455 TE~~~~~~~~~--~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~-  531 (672)
                      ||++..++...  ..+....++|.|+++++++|+| ++++.+   +.|..|||+|+|+++++||+++|+.|++.|..++ 
T Consensus      1424 TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~v---p~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~ 1499 (4334)
T PRK05691       1424 TETAINVTHWQCQAEDGERSPIGRPLGNVLCRVLD-AELNLL---PPGVAGELCIGGAGLARGYLGRPALTAERFVPDPL 1499 (4334)
T ss_pred             ChheeeeeeeecccccCCCCcccceeCCCEEEEEC-CCCCCC---CCCCceEEEecCcccchhhcCCccccHhhCCCCCC
Confidence            99987665432  2233457899999999999999 666554   5889999999999999999999999999997543 


Q ss_pred             --CCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC--CeEEEEEEcChh
Q 005874          532 --KGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH--SYCVALVVASQP  607 (672)
Q Consensus       532 --~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~--~~~va~v~~~~~  607 (672)
                        ++.+||+|||+|++++||.++++||+|++||+ +|++|+|.+||+++.+||+|.+|+|++....  ..++|++++..+
T Consensus      1500 ~~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki-~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~~~~~lva~~~~~~~ 1578 (4334)
T PRK05691       1500 GEDGARLYRTGDRARWNADGALEYLGRLDQQVKL-RGFRVEPEEIQARLLAQPGVAQAAVLVREGAAGAQLVGYYTGEAG 1578 (4334)
T ss_pred             CCCCceEEEccceEEECCCCCEEEecccCcEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEeeCCCCCEEEEEEEeCCC
Confidence              24579999999999999999999999999998 5999999999999999999999999876533  569999987765


Q ss_pred             HHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHH
Q 005874          608 AVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKA  662 (672)
Q Consensus       608 ~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~  662 (672)
                      ........  ...++++||.|++|..++.++..|      +|++||++|++|++.
T Consensus      1579 ~~~~~~~l--~~~l~~~Lp~y~vP~~~~~~~~lP------~t~~GKidr~~L~~~ 1625 (4334)
T PRK05691       1579 QEAEAERL--KAALAAELPEYMVPAQLIRLDQMP------LGPSGKLDRRALPEP 1625 (4334)
T ss_pred             CCCCHHHH--HHHHHHhCccccCCcEEEEccccC------CCCCCCcChhhcCcc
Confidence            32221111  166778999999999999999987      999999999999753

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2e-58  Score=513.64  Aligned_cols=506  Identities=22%  Similarity=0.264  Sum_probs=396.0

Q ss_pred             CHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEc
Q 005874           59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFA  138 (672)
Q Consensus        59 tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~  138 (672)
                      |+.++|++.++++||++|+.+            +++           .+||.|+.++++++|..|.+.|+++|++|++++
T Consensus         4 ~l~~~~~~~a~~~p~~~a~~~------------~~~-----------~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~   60 (533)
T PRK07798          4 NIADLFEAVADAVPDRVALVC------------GDR-----------RLTYAELEERANRLAHYLIAQGLGPGDHVGIYA   60 (533)
T ss_pred             cHHHHHHHHHHhCCCceEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence            799999999999999999986            444           799999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccccc
Q 005874          139 DTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSS  218 (672)
Q Consensus       139 ~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~  218 (672)
                      +|+++|++++|||+++|++++|+++.++.+++.+++++++++.++++......+.+.....+..+.++.++......   
T Consensus        61 ~n~~~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  137 (533)
T PRK07798         61 RNRIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGND---  137 (533)
T ss_pred             CCCHHHHHHHHHHHhcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCcccc---
Confidence            99999999999999999999999999999999999999999999999988887777766667777777766543211   


Q ss_pred             cccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhc--------CCC-
Q 005874          219 VEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV--------PDL-  289 (672)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--------~~~-  289 (672)
                          .....++++++........ .... ..++.++|+|||||||.||+|+++|+++..........+        ..+ 
T Consensus       138 ----~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (533)
T PRK07798        138 ----LLPGAVDYEDALAAGSPER-DFGE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELA  211 (533)
T ss_pred             ----cCCccccHHHHHhccCCcC-CCCC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhc
Confidence                0112446777665433221 1112 233457899999999999999999999986554432211        011 


Q ss_pred             -----CCCcEEEEecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHH-HHH
Q 005874          290 -----GSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR-VRD  363 (672)
Q Consensus       290 -----~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~-l~~  363 (672)
                           ..+++++..+|+.|..+++..+.+++.|+++++.+... . +    ...++..++++++|.+.++|..+.. +..
T Consensus       212 ~~~~~~~~~~~~~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~-~-~----~~~~~~~i~~~~~t~~~~~~~~~~~~l~~  285 (533)
T PRK07798        212 KRAAAGPGMRRFPAPPLMHGAGQWAAFAALFSGQTVVLLPDVR-F-D----ADEVWRTIEREKVNVITIVGDAMARPLLD  285 (533)
T ss_pred             ccccCCCCceEEEecchhhhhhHHHHHHHHhcCceEEEecCCC-c-C----HHHHHHHHHHhCCeEEEechHHHHHHHHH
Confidence                 56789999999999999998889999999999954221 1 1    1223334999999999999876643 322


Q ss_pred             HHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHH
Q 005874          364 GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC  443 (672)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~  443 (672)
                      .+. .                                             ......+++|.+++||+++++++.+++++.
T Consensus       286 ~~~-~---------------------------------------------~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~  319 (533)
T PRK07798        286 ALE-A---------------------------------------------RGPYDLSSLFAIASGGALFSPSVKEALLEL  319 (533)
T ss_pred             Hhc-c---------------------------------------------cccCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            211 0                                             001122489999999999999999999998


Q ss_pred             h-CCceecccCcccccccccccCCCCCCCCccC--CCcCCeEEEEEecCCCCcccCCCCCCc--cEEEEccCcccccccC
Q 005874          444 L-GAPIGQGYGLTETCAGGTFSEVDDSSVGRVG--APLPCSFIKLIDWPEGGYLTSDSPMPR--GEIVIAGPNVTVGYFK  518 (672)
Q Consensus       444 ~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G--~p~~~~~v~i~d~~~~~~~~~~~~g~~--GEi~v~g~~v~~gY~~  518 (672)
                      + +.++++.||+||++..........  ....|  .+.++.+++|+| +++..+   +.|+.  |+++ +++.++.||++
T Consensus       320 ~~~~~~~~~YG~tE~~~~~~~~~~~~--~~~~g~~~~~~~~~~~i~~-~~~~~~---~~g~~~~g~l~-~~~~~~~gy~~  392 (533)
T PRK07798        320 LPNVVLTDSIGSSETGFGGSGTVAKG--AVHTGGPRFTIGPRTVVLD-EDGNPV---EPGSGEIGWIA-RRGHIPLGYYK  392 (533)
T ss_pred             cCCCeEEeeecccccccccccCCCCC--CccCCCCccCCCceEEEEC-CCCCCC---CCCCCCeeEEE-eecCccccccC
Confidence            7 789999999999865544332211  12334  788899999999 666644   35555  6665 56689999999


Q ss_pred             CchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---
Q 005874          519 NEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---  595 (672)
Q Consensus       519 ~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---  595 (672)
                      +++.|++.|.. .++++||+|||+|++++||.+++.||++|+|+. +|++|+|++||+++.++|.|.+++|++..+.   
T Consensus       393 ~~~~t~~~f~~-~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~  470 (533)
T PRK07798        393 DPEKTAETFPT-IDGVRYAIPGDRARVEADGTITLLGRGSVCINT-GGEKVFPEEVEEALKAHPDVADALVVGVPDERWG  470 (533)
T ss_pred             ChhhhHHhhcc-CCCCceEEcCcEEEEcCCCcEEEEccccceEec-CCEEeCHHHHHHHHHhCccceeEEEEeccCcccC
Confidence            99999988853 235689999999999999999999999999996 6999999999999999999999999997654   


Q ss_pred             CeEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874          596 SYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       596 ~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                      +.++++++++++...+...  ....+++.|+.|++|+.++++++.|      +|++||++|+.|+++..+
T Consensus       471 ~~~~~~v~~~~~~~~~~~~--l~~~l~~~l~~~~~P~~i~~~~~iP------~t~~GK~~~~~~~~~~~~  532 (533)
T PRK07798        471 QEVVAVVQLREGARPDLAE--LRAHCRSSLAGYKVPRAIWFVDEVQ------RSPAGKADYRWAKEQAAE  532 (533)
T ss_pred             ceEEEEEEECCCCCCCHHH--HHHHHhhhcccCCCCeEEEEcccCC------CCCcchhhHHHHhhhhcc
Confidence            4588888876543211111  1155668899999999999999887      999999999999998754

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=7.6e-59  Score=513.13  Aligned_cols=488  Identities=23%  Similarity=0.241  Sum_probs=391.6

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF  137 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~  137 (672)
                      .++.+++++++..+|+++|+..            ++.           .+||.||.+.+.++|..|.++|+.+|++|+++
T Consensus         2 ~~~~~~l~~~a~~~p~~~~~~~------------~~~-----------~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~   58 (503)
T PRK04813          2 MDIIETIEEFAQTQPDFPAYDY------------LGE-----------KLTYGQLKEDSDALAAFIDSLKLPDKSPIIVF   58 (503)
T ss_pred             chHHHHHHHHHHhCCCceEEEe------------CCc-----------EEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            5788999999999999999875            333           69999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCccccc
Q 005874          138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS  217 (672)
Q Consensus       138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~  217 (672)
                      ++|+.+++++++||++.|++++|+++..+.+.+.++++.++++.++++.....       ...                 
T Consensus        59 ~~~~~~~~~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-----------------  114 (503)
T PRK04813         59 GHMSPEMLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPL-------EIL-----------------  114 (503)
T ss_pred             cCCCHHHHHHHHHHHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEecccccc-------ccc-----------------
Confidence            99999999999999999999999999999999999999999999999876410       000                 


Q ss_pred             ccccCCCeEEEeHHHHHhccc-CCC-CCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEE
Q 005874          218 SVEQSGRWKITSFADVQILGR-ENP-VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY  295 (672)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~  295 (672)
                            ....+.++++..... ... .......++++++++|||||||.||+|.+||+++.+.+......+ .+..+|++
T Consensus       115 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-~~~~~~~~  187 (503)
T PRK04813        115 ------GIPVITLDELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDF-ALPEGPQF  187 (503)
T ss_pred             ------CCcEEehHHhhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHc-CCCcCcee
Confidence                  111222333322211 111 112334678899999999999999999999999999888877777 88999999


Q ss_pred             EEecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCch
Q 005874          296 LAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGL  375 (672)
Q Consensus       296 l~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~  375 (672)
                      ++.+|++|..++...+.++..|+++++.+.....+     ...+...++++++|++.++|.++..+......        
T Consensus       188 ~~~~p~~~~~~~~~~~~~l~~g~~~v~~~~~~~~~-----~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~--------  254 (503)
T PRK04813        188 LNQAPYSFDLSVMDLYPTLASGGTLVALPKDMTAN-----FKQLFETLPQLPINVWVSTPSFADMCLLDPSF--------  254 (503)
T ss_pred             eecCCcchhHhHHHHHHHHhcCCEEEEcChhhhcC-----HHHHHHHHHHcCCeEEEeChHHHHHHHHhhcc--------
Confidence            99999999999888888999999998743211111     11122238999999999999999776542110        


Q ss_pred             hHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCceecccCc
Q 005874          376 SKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQGYGL  454 (672)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~  454 (672)
                                                             .....+++|.++++|+++++.+.+.+.+.+ ++++++.||+
T Consensus       255 ---------------------------------------~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~  295 (503)
T PRK04813        255 ---------------------------------------NEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGP  295 (503)
T ss_pred             ---------------------------------------CcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCccc
Confidence                                                   011124899999999999999999999988 7889999999


Q ss_pred             ccccccccccCCC-----CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhccc
Q 005874          455 TETCAGGTFSEVD-----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV  529 (672)
Q Consensus       455 TE~~~~~~~~~~~-----~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~  529 (672)
                      ||++...+.....     .....++|.|.++++++|+| +++..+   +.++.|||+++|++++.||+++++.+.+.|..
T Consensus       296 tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~~~~~---~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~  371 (503)
T PRK04813        296 TEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIID-EEGTKL---PDGEQGEIVISGPSVSKGYLNNPEKTAEAFFT  371 (503)
T ss_pred             chheeEEEEEEecccccccCCCCcccccCCCCEEEEEC-CCCCCC---CCCCceEEEEeccccccccCCChhHhHHhhcc
Confidence            9987654432211     23345799999999999999 666554   46789999999999999999999999888742


Q ss_pred             CCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcCh
Q 005874          530 DDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQ  606 (672)
Q Consensus       530 ~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~  606 (672)
                      . ++.+||+|||+|++ ++|.+++.||.+|+|+. +|++|+|.+||+++.++|+|.+++|++..++   +.+++++++++
T Consensus       372 ~-~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  448 (503)
T PRK04813        372 F-DGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKL-NGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKE  448 (503)
T ss_pred             C-CCceeEECCceEEe-eCCeEEEeccccceEEE-CcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEecc
Confidence            2 25579999999999 89999999999999997 6999999999999999999999999986543   46899999877


Q ss_pred             hHHHHH--HHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHH
Q 005874          607 PAVEEW--AAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFA  664 (672)
Q Consensus       607 ~~~~~~--~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~  664 (672)
                      +.....  ........+.++|+.+++|+.++++++.|      +|++||++|++|++.+.
T Consensus       449 ~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P------~t~~gKv~r~~l~~~~~  502 (503)
T PRK04813        449 EDFEREFELTKAIKKELKERLMEYMIPRKFIYRDSLP------LTPNGKIDRKALIEEVN  502 (503)
T ss_pred             ccccccchhHHHHHHHHHhhCccccCCeEEEEeccCC------CCCCCCCcHHHHHHHhc
Confidence            432110  11111156668999999999999999887      99999999999998875

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=8.1e-59  Score=559.79  Aligned_cols=493  Identities=23%  Similarity=0.250  Sum_probs=383.6

Q ss_pred             CCCCHHHHHHHHHHHcCC-CCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874           56 GISTLAELFEQSCKEHGD-KYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV  134 (672)
Q Consensus        56 ~~~tl~~~~~~~a~~~pd-~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V  134 (672)
                      ...++.+.+.+.++++|+ +.++.+.           +++           .+||+|+.++++++|+.|++ |+++||+|
T Consensus       629 ~~~~~~~~l~~~~~~~~~~~~ai~~~-----------~~~-----------~~Ty~el~~~~~~lA~~L~~-g~~~gd~V  685 (1140)
T PRK06814        629 YDRTLFEALIEAAKIHGFKKLAVEDP-----------VNG-----------PLTYRKLLTGAFVLGRKLKK-NTPPGENV  685 (1140)
T ss_pred             ccCCHHHHHHHHHHHcCCCCeEeECC-----------CCC-----------ccCHHHHHHHHHHHHHHHHh-cCCCCCeE
Confidence            357788999999999875 5555421           223           69999999999999999975 99999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHH--HhhhcCCCCccEEEEecCCC
Q 005874          135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKL--VDLSGQLDTVKHVICMDANI  212 (672)
Q Consensus       135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l--~~~~~~~~~l~~ii~~~~~~  212 (672)
                      +++++|+++++++++||+++|++++|+++..+++++.+++++++++.++++++..+..  .+..+..+....++..++..
T Consensus       686 ~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  765 (1140)
T PRK06814        686 GVMLPNANGAAVTFFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVR  765 (1140)
T ss_pred             EEEcCCchHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhh
Confidence            9999999999999999999999999999999999999999999999999997654322  11112222233344443211


Q ss_pred             cccccccccCCCeEEEeHHHHHhc--ccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCC
Q 005874          213 PSAVSSVEQSGRWKITSFADVQIL--GRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG  290 (672)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~  290 (672)
                      ..            ...++++...  ............+||+++++|||||||.||||++||+++.+.+......+ +++
T Consensus       766 ~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~~~  832 (1140)
T PRK06814        766 AQ------------IGLADKIKGLLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-DFS  832 (1140)
T ss_pred             cc------------CChHHHHHHHhhccCCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhh-CCC
Confidence            00            0001111110  00001111135679999999999999999999999999999888888777 889


Q ss_pred             CCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeCC-cc---cccCchhhhhcccccccccccceeeecchHHHHHHHHHH
Q 005874          291 SKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYGT-PL---TLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGV  365 (672)
Q Consensus       291 ~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~~-~~---~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~  365 (672)
                      ++|++++.+|++|.+++.. .+.++..|+++++.+ +.   .+.+.           ++++++|++.++|++++.+.+..
T Consensus       833 ~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~l~~l~~~~  901 (1140)
T PRK06814        833 PEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPEL-----------IYDTNATILFGTDTFLNGYARYA  901 (1140)
T ss_pred             CcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEecCcccHHHHHHH-----------HHhcCCEEEEecHHHHHHHHhhc
Confidence            9999999999999999854 677899999998832 22   22233           88999999999999998775521


Q ss_pred             HHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhC
Q 005874          366 RKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLG  445 (672)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~  445 (672)
                      .                                                 ....+++|.+++||+++++++.+.+.+.++
T Consensus       902 ~-------------------------------------------------~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~  932 (1140)
T PRK06814        902 H-------------------------------------------------PYDFRSLRYVFAGAEKVKEETRQTWMEKFG  932 (1140)
T ss_pred             c-------------------------------------------------cccccceeEEEEcCCcCCHHHHHHHHHHhC
Confidence            0                                                 011238999999999999999999999899


Q ss_pred             CceecccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhh
Q 005874          446 APIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKE  525 (672)
Q Consensus       446 ~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~  525 (672)
                      +++++.||+||++..++.........+++|.|.|++++++++.+ +       .++.|||+++|++++.||+++++.+..
T Consensus       933 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~g~~~~~~~~~-~-------~~~~Gel~v~g~~~~~gY~~~~~~~~~ 1004 (1140)
T PRK06814        933 IRILEGYGVTETAPVIALNTPMHNKAGTVGRLLPGIEYRLEPVP-G-------IDEGGRLFVRGPNVMLGYLRAENPGVL 1004 (1140)
T ss_pred             CcEEeccccccccceEEecCCCCCCCCcCCccCCCCeEEEeecC-C-------CCCceEEEEeCCCcchhhcCCCCCCcc
Confidence            99999999999987766554444556899999999999998832 1       246799999999999999987653321


Q ss_pred             hcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEE
Q 005874          526 VYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALV  602 (672)
Q Consensus       526 ~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v  602 (672)
                      .    ...+|||+|||+|++|+||.+++.||.||+||+ +|++|+|.+||+++.+|+.|.+++|++.+++   +.+++++
T Consensus      1005 ~----~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~ 1079 (1140)
T PRK06814       1005 E----PPADGWYDTGDIVTIDEEGFITIKGRAKRFAKI-AGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLT 1079 (1140)
T ss_pred             c----cCCCCeEecCCEEEECCCCeEEEEecccCeeee-CCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEE
Confidence            1    126899999999999999999999999999997 6999999999999999999999999997665   3466665


Q ss_pred             EcChhHHHHHHHHcChhhhh-cCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHHHH
Q 005874          603 VASQPAVEEWAAKQGIVGKN-ARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLA  668 (672)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~-~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~  668 (672)
                      ...+....+..     +.+. ..|+.|++|+.+.++++.|      +|++||++|++|++.+++...
T Consensus      1080 ~~~~~~~~~l~-----~~~~~~~l~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~~~ 1135 (1140)
T PRK06814       1080 TASDATRAAFL-----AHAKAAGASELMVPAEIITIDEIP------LLGTGKIDYVAVTKLAEEAAA 1135 (1140)
T ss_pred             cCCCcCHHHHH-----HHHHHcCCCcccCCcEEEEecCcC------CCCCCCCcHHHHHHHHHHhhc
Confidence            43322222211     3333 4699999999999999987      999999999999999887653

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.4e-58  Score=513.76  Aligned_cols=505  Identities=22%  Similarity=0.226  Sum_probs=386.6

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF  137 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~  137 (672)
                      .++.+.|++.++.+|+++|+..            ++.           .+||+||.+++.++|.+|.+.|+++|++|+++
T Consensus        18 ~~~~~~~~~~~~~~~~~~a~~~------------~~~-----------~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~   74 (545)
T PRK08162         18 LTPLSFLERAAEVYPDRPAVIH------------GDR-----------RRTWAETYARCRRLASALARRGIGRGDTVAVL   74 (545)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEE------------CCe-----------EEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            5889999999999999999976            333           69999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCccccc
Q 005874          138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS  217 (672)
Q Consensus       138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~  217 (672)
                      ++|++++++++|||+++|++++|+++..+.+++.+++++++++.++++.+..+.+.+.....+..+.++ ++......  
T Consensus        75 ~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--  151 (545)
T PRK08162         75 LPNIPAMVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLV-IDVDDPEY--  151 (545)
T ss_pred             CCCchHHHHHHHHHHHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCceEE-EecCcccc--
Confidence            999999999999999999999999999999999999999999999999988777766544444332222 22111100  


Q ss_pred             ccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEEE
Q 005874          218 SVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA  297 (672)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~  297 (672)
                        .....+...++.++................++.++|+|||||||.||||+++|+++..........+ .+..+|++++
T Consensus       152 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~-~~~~~~~~l~  228 (545)
T PRK08162        152 --PGGRFIGALDYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAW-GMPKHPVYLW  228 (545)
T ss_pred             --ccCCCcccccHHHHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-CCCCCCeeEe
Confidence              0001123345666654322211111223446789999999999999999999999877766555555 7888999999


Q ss_pred             ecChHhHHHHHHHHHH-hHhCcEEee--CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCc
Q 005874          298 YLPLAHVLELVAENLI-AGVGSAIGY--GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGG  374 (672)
Q Consensus       298 ~~pl~h~~~~~~~~~~-l~~G~~i~~--~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~  374 (672)
                      .+|++|.+++...+.. +..|++++.  .++..+.+.           ++++++|++.++|.++..|.+........   
T Consensus       229 ~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------l~~~~~t~~~~~P~~~~~l~~~~~~~~~~---  294 (545)
T PRK08162        229 TLPMFHCNGWCFPWTVAARAGTNVCLRKVDPKLIFDL-----------IREHGVTHYCGAPIVLSALINAPAEWRAG---  294 (545)
T ss_pred             ccCcHhhhhHHHHHHHHHHccEEEEeCCCCHHHHHHH-----------HHHcCCeEEEechHHHHHHHhCccccccC---
Confidence            9999999998765444 444444444  455555555           99999999999999999887632110000   


Q ss_pred             hhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCc
Q 005874          375 LSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGL  454 (672)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~  454 (672)
                                                                  ....+.++++|++++++..+.++.. ++++++.||+
T Consensus       295 --------------------------------------------~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~  329 (545)
T PRK08162        295 --------------------------------------------IDHPVHAMVAGAAPPAAVIAKMEEI-GFDLTHVYGL  329 (545)
T ss_pred             --------------------------------------------CccceEEEECCCCCCHHHHHHHHHh-CCceeecccc
Confidence                                                        0145566889999999999988874 8999999999


Q ss_pred             ccccccccccCCCC-----------CCCCccCCCcC-CeEEEEEecCCCCcccCCCCC-CccEEEEccCcccccccCCch
Q 005874          455 TETCAGGTFSEVDD-----------SSVGRVGAPLP-CSFIKLIDWPEGGYLTSDSPM-PRGEIVIAGPNVTVGYFKNEE  521 (672)
Q Consensus       455 TE~~~~~~~~~~~~-----------~~~~~~G~p~~-~~~v~i~d~~~~~~~~~~~~g-~~GEi~v~g~~v~~gY~~~~~  521 (672)
                      ||+++.++......           ...+++|.+.+ +.+++|+|.+++..++  ..| ..|||+++|+.++.||+++++
T Consensus       330 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~--~~g~~~Gel~v~g~~~~~gY~~~~~  407 (545)
T PRK08162        330 TETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVP--ADGETIGEIMFRGNIVMKGYLKNPK  407 (545)
T ss_pred             cccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccC--CCCCceeEEEEecCcchhhhcCChh
Confidence            99865444322110           11245666655 3468888844554443  223 469999999999999999999


Q ss_pred             hhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeE
Q 005874          522 KTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYC  598 (672)
Q Consensus       522 ~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~  598 (672)
                      .+...|     .+|||+|||+|++|+||.++++||.+|++|. +|++|+|.+||+++.++|+|.+++|++.+++   +.+
T Consensus       408 ~~~~~~-----~~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~  481 (545)
T PRK08162        408 ATEEAF-----AGGWFHTGDLAVLHPDGYIKIKDRSKDIIIS-GGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVP  481 (545)
T ss_pred             hhHHHh-----hCCCcccCceEEEcCCccEEEEecccceEEe-CCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceE
Confidence            999998     6789999999999999999999999999996 6999999999999999999999999997654   458


Q ss_pred             EEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHHH
Q 005874          599 VALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDL  667 (672)
Q Consensus       599 va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i  667 (672)
                      +++|++.++...+..+.  ...+++.|+.|++|..+.+. +.|      +|++||++|+.|++++++.-
T Consensus       482 ~~~v~~~~~~~~~~~~l--~~~~~~~l~~~~~P~~~~~~-~iP------~t~~gK~~r~~l~~~~~~l~  541 (545)
T PRK08162        482 CAFVELKDGASATEEEI--IAHCREHLAGFKVPKAVVFG-ELP------KTSTGKIQKFVLREQAKSLK  541 (545)
T ss_pred             EEEEEeCCCCCCCHHHH--HHHHHHhcccccCCcEEEec-ccC------CCCCcCCcHHHHHHHHhhhh
Confidence            88888776432111111  15667899999999998764 444      89999999999999877643

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.5e-59  Score=514.99  Aligned_cols=483  Identities=19%  Similarity=0.239  Sum_probs=371.6

Q ss_pred             HHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHH
Q 005874           66 QSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWF  145 (672)
Q Consensus        66 ~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e~~  145 (672)
                      ..++.+|+++|+...+          +|+           .+||+||.++++++|+.|.++|+++||+|+++++|+++++
T Consensus         5 ~~a~~~p~~~a~~~~~----------~~~-----------~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~   63 (501)
T PRK13390          5 THAQIAPDRPAVIVAE----------TGE-----------QVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEAL   63 (501)
T ss_pred             hhhhhCCCCcEEEecC----------CCe-----------EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH
Confidence            3567799999997531          233           7999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccccccccCCCe
Q 005874          146 VALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRW  225 (672)
Q Consensus       146 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~  225 (672)
                      +++|||+++|++++|+++.++++++.+++++++++.+++++.......+.....   ...+.+.....            
T Consensus        64 ~~~la~~~~Ga~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~------------  128 (501)
T PRK13390         64 VVLWAALRSGLYITAINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGADL---PLRLSFGGEID------------  128 (501)
T ss_pred             HHHHHHHHhCCEEeccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHhhhcc---ceEEEecCccc------------
Confidence            999999999999999999999999999999999999999876544333222111   11222211100            


Q ss_pred             EEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEe--ehHHHHHHHH----HHHhhcCCCCCCcEEEEec
Q 005874          226 KITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMM--THGNVLATVS----AVMTIVPDLGSKDVYLAYL  299 (672)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~--th~~l~~~~~----~~~~~~~~~~~~d~~l~~~  299 (672)
                      ...++++......     +.....++.++|+|||||||.||||++  +|.++.....    .....+ .+..+|++++.+
T Consensus       129 ~~~~~~~~~~~~~-----~~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  202 (501)
T PRK13390        129 GFGSFEAALAGAG-----PRLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFY-DISESDIYYSSA  202 (501)
T ss_pred             ccccHHHHhcccC-----CCCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHh-CCCCCCeEEecc
Confidence            0112333222110     111122357999999999999999995  5666554321    112234 788999999999


Q ss_pred             ChHhHHHHHHHHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchh
Q 005874          300 PLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLS  376 (672)
Q Consensus       300 pl~h~~~~~~~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~  376 (672)
                      |++|.+++......+..|+++++   +++..+++.           ++++++|++.++|.++..+.+......       
T Consensus       203 p~~h~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~-------  264 (501)
T PRK13390        203 PIYHAAPLRWCSMVHALGGTVVLAKRFDAQATLGH-----------VERYRITVTQMVPTMFVRLLKLDADVR-------  264 (501)
T ss_pred             cchhhhHHHHHHHHHhcCceEEEcCCcCHHHHHHH-----------HHHcCCeEEEecHHHHHHHHhccchhc-------
Confidence            99999988766666788999988   334444444           999999999999999988875211100       


Q ss_pred             HHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCccc
Q 005874          377 KKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTE  456 (672)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE  456 (672)
                                                            .....+++|.+++||+++++++.+.+++.++.++++.||+||
T Consensus       265 --------------------------------------~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE  306 (501)
T PRK13390        265 --------------------------------------TRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTE  306 (501)
T ss_pred             --------------------------------------ccCChhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccc
Confidence                                                  000113789999999999999999999988999999999999


Q ss_pred             ccccccccCCC-CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCc
Q 005874          457 TCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMR  535 (672)
Q Consensus       457 ~~~~~~~~~~~-~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~g  535 (672)
                      +++++...... ....+++|.|.++ +++|+| +++..+   ++|+.|||+++|++++.||+++|+.|++.|...  .++
T Consensus       307 ~~~~~~~~~~~~~~~~~~~G~~~~g-~~~i~d-~~~~~~---~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~--~~~  379 (501)
T PRK13390        307 AHGMTFIDSPDWLAHPGSVGRSVLG-DLHICD-DDGNEL---PAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPA--HPF  379 (501)
T ss_pred             cCceEEecchhhccCCCCcCCcccc-eEEEEC-CCCCCC---CCCCceEEEEecCCccccccCChhhhHHhhccC--CCc
Confidence            97654432221 2245789999999 799999 666544   588999999999999999999999999887521  368


Q ss_pred             eEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcChhHH-HH
Q 005874          536 WFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQPAV-EE  611 (672)
Q Consensus       536 w~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~~~~-~~  611 (672)
                      |++|||+|++|+||.+++.||.||+||. +|++|+|.+||+++..||+|.+++|++..++   +.+++++++.++.. .+
T Consensus       380 w~~tGDl~~~~~dg~l~~~gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~~  458 (501)
T PRK13390        380 WTTVGDLGSVDEDGYLYLADRKSFMIIS-GGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSD  458 (501)
T ss_pred             eEEcCceEEECCCCeEEEeeccccceeE-CCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCcch
Confidence            9999999999999999999999999997 5999999999999999999999999998765   45888888765421 11


Q ss_pred             HHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHH
Q 005874          612 WAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIR  660 (672)
Q Consensus       612 ~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~  660 (672)
                      ...+.....++++|+.|++|..++++++.|      +|++||++|++|+
T Consensus       459 ~~~~~l~~~~~~~l~~~~~P~~~~~~~~iP------~t~~GKi~r~~L~  501 (501)
T PRK13390        459 ELARELIDYTRSRIAHYKAPRSVEFVDELP------RTPTGKLVKGLLR  501 (501)
T ss_pred             hhHHHHHHHHHHhcccCCCCcEEEEeccCC------CCCccceehhhcC
Confidence            111111256678999999999999999987      9999999999874

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.8e-59  Score=523.93  Aligned_cols=503  Identities=22%  Similarity=0.270  Sum_probs=379.8

Q ss_pred             cCCCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCC
Q 005874           53 SWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEE  132 (672)
Q Consensus        53 ~~~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~  132 (672)
                      ..+++.++.++++..++.+|+..++..            +++        .++.+||.||..++.++|.+|.++|+++|+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~--------~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd   75 (579)
T PRK09192         16 RYADFPTLVEALDYAALGEAGMNFYDR------------RGQ--------LEEALPYQTLRARAEAGARRLLALGLKPGD   75 (579)
T ss_pred             cccchhhHHHHHHHhhccCCceEEEec------------CCC--------EEEEecHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            457788999999999999886655421            222        346899999999999999999999999999


Q ss_pred             EEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCC-------HHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEE
Q 005874          133 RVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG-------EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHV  205 (672)
Q Consensus       133 ~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~i  205 (672)
                      +|+++++|+++|+++++||+++|++++|+++..+       .+++.++++.++++++|+++...+.+.+.....+.    
T Consensus        76 ~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~~----  151 (579)
T PRK09192         76 RVALIAETDGDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNPL----  151 (579)
T ss_pred             EEEEEcCCchhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhccccc----
Confidence            9999999999999999999999999999986443       58999999999999999998877666554322110    


Q ss_pred             EEecCCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHh-
Q 005874          206 ICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT-  284 (672)
Q Consensus       206 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~-  284 (672)
                                         ..+.++.++...... ........++++++|+|||||||.||||+++|+++++.+..... 
T Consensus       152 -------------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~  211 (579)
T PRK09192        152 -------------------LHVLSHAWFKALPEA-DVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHD  211 (579)
T ss_pred             -------------------cceeehhhhcccCCC-ccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhh
Confidence                               111223333222211 11122345689999999999999999999999999998887776 


Q ss_pred             hcCCCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHH
Q 005874          285 IVPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRD  363 (672)
Q Consensus       285 ~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~  363 (672)
                      .+ ++.++|++++++|++|.+++.. .+.++..|+++.+.....+...    +..+...+.++++|+++.+|..+..+..
T Consensus       212 ~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~----~~~~~~~i~~~~~t~~~~~~~~~~l~~~  286 (579)
T PRK09192        212 GL-KVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARR----PLQWLDLISRNRGTISYSPPFGYELCAR  286 (579)
T ss_pred             cc-cCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHC----HHHHHHHHHhcCcEEEeCCcHHHHHHHH
Confidence            56 8899999999999999999886 4556889999876322111111    1112222899999987776655544432


Q ss_pred             HHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHH
Q 005874          364 GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC  443 (672)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~  443 (672)
                      ......                                            ......+++|.+++||+++++++.+.+.+.
T Consensus       287 ~~~~~~--------------------------------------------~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~  322 (579)
T PRK09192        287 RVNSKD--------------------------------------------LAELDLSCWRVAGIGADMIRPDVLHQFAEA  322 (579)
T ss_pred             hhcccc--------------------------------------------ccccchhhhheeEecCccCCHHHHHHHHHH
Confidence            211000                                            000112479999999999999999988887


Q ss_pred             hC------CceecccCcccccccccccCCCC----------------------------CCCCccCCCcCCeEEEEEecC
Q 005874          444 LG------APIGQGYGLTETCAGGTFSEVDD----------------------------SSVGRVGAPLPCSFIKLIDWP  489 (672)
Q Consensus       444 ~~------~~v~~~YG~TE~~~~~~~~~~~~----------------------------~~~~~~G~p~~~~~v~i~d~~  489 (672)
                      +.      ..+++.||+||+++.++......                            ...+++|.|.|+++++|+| +
T Consensus       323 ~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~  401 (579)
T PRK09192        323 FAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-E  401 (579)
T ss_pred             HHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-C
Confidence            63      34899999999986655432211                            0125789999999999999 6


Q ss_pred             CCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceee
Q 005874          490 EGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYV  569 (672)
Q Consensus       490 ~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v  569 (672)
                      ++..+   +.+..|||+++|+.+++||+++ +.+.+.+.    .+|||+|||+|++ ++|.++++||++|+||+ +|++|
T Consensus       402 ~~~~~---~~g~~Gel~i~g~~~~~gY~~~-~~~~~~~~----~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~-~G~~v  471 (579)
T PRK09192        402 AGMPL---PERVVGHICVRGPSLMSGYFRD-EESQDVLA----ADGWLDTGDLGYL-LDGYLYITGRAKDLIII-NGRNI  471 (579)
T ss_pred             CCCCC---CCCCEEEEEecCCchhhhhcCC-cccccccc----CCceeeccceeeE-ECCEEEEEeccccEEEE-CCCcc
Confidence            66554   4678999999999999999999 66766676    7899999999999 89999999999999998 69999


Q ss_pred             ccHHHHHHHhcCcccc--eEEEEecCCC--CeEEEEEEcChhHHHHHHHHcChhhhhcCCC-CCcceeEEEEee--cCCC
Q 005874          570 SLGKVEAALIVSPYVD--NIMMHADPFH--SYCVALVVASQPAVEEWAAKQGIVGKNARLD-KFEIPAKIKLLS--YPWT  642 (672)
Q Consensus       570 ~p~~iE~~l~~~~~V~--~~~V~g~~~~--~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~-~~~~p~~i~~~~--~~~~  642 (672)
                      +|.+||+++.+||+|.  +|+|++..++  ..++++|++.+....+....  ...+++.+. .+..|..+.+++  ..| 
T Consensus       472 ~p~eIE~~l~~~p~V~~~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~l--~~~~~~~l~~~~~~~~~i~~~~~~~lP-  548 (579)
T PRK09192        472 WPQDIEWIAEQEPELRSGDAAAFSIAQENGEKIVLLVQCRISDEERRGQL--IHALAALVRSEFGVEAAVELVPPHSLP-  548 (579)
T ss_pred             CHHHHHHHHHhcCCccCCcEEEEEeccCCCeeEEEEEEecCCChHHHHHH--HHHHHHHHHHHhCCCceEEEeCCCCcC-
Confidence            9999999999999998  8999886654  35788887654332211111  144445553 578888888776  444 


Q ss_pred             CCCCccccccccChHHHHHHHHHHH
Q 005874          643 SEAGLVTAALKIKREAIRKAFADDL  667 (672)
Q Consensus       643 ~~~~~~t~~gKi~R~~l~~~~~~~i  667 (672)
                           +|++||++|++|++.|....
T Consensus       549 -----~t~~GKv~R~~l~~~~~~~~  568 (579)
T PRK09192        549 -----RTSSGKLSRAKAKKRYLSGA  568 (579)
T ss_pred             -----CCCCcchhHHHHHHHHHcCC
Confidence                 99999999999999987643

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2e-58  Score=509.96  Aligned_cols=493  Identities=20%  Similarity=0.208  Sum_probs=389.6

Q ss_pred             HHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH
Q 005874           65 EQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEW  144 (672)
Q Consensus        65 ~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e~  144 (672)
                      ...++++||++|+.+..          +++           .+||.|+.+++.++|.+|.++|+++|++|+++++|++++
T Consensus         4 ~~~a~~~p~~~a~~~~~----------~~~-----------~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~   62 (511)
T PRK13391          4 GIHAQTTPDKPAVIMAS----------TGE-----------VVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRY   62 (511)
T ss_pred             hhhHhhCCCceEEEecC----------CCC-----------EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence            35678899999997621          233           699999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccccccccCCC
Q 005874          145 FVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGR  224 (672)
Q Consensus       145 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~  224 (672)
                      +++++||++.|++++|+++.++.+.+.+++++++++.++++......+.+.....+.....+..+.....          
T Consensus        63 ~~~~~a~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  132 (511)
T PRK13391         63 LEVCWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGEL----------  132 (511)
T ss_pred             HHHHHHHHHhccEEeccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCC----------
Confidence            9999999999999999999999999999999999999999998877766665555555555554432111          


Q ss_pred             eEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEe--ehHHHHHHH---HHHHhhcCCCCCCcEEEEec
Q 005874          225 WKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMM--THGNVLATV---SAVMTIVPDLGSKDVYLAYL  299 (672)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~--th~~l~~~~---~~~~~~~~~~~~~d~~l~~~  299 (672)
                      .....+++.....   +. ......++.++++|||||||.||||++  +|.++....   ......+ .+.+++++++.+
T Consensus       133 ~~~~~~~~~~~~~---~~-~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~  207 (511)
T PRK13391        133 EGFVGYAEAVAGL---PA-TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLW-GFRSDMVYLSPA  207 (511)
T ss_pred             cccccHHHHhcCC---CC-CCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhc-CCCCCCeEEEcC
Confidence            0112233332211   11 112234567899999999999999995  566654332   2233444 778899999999


Q ss_pred             ChHhHHHHHHHHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchh
Q 005874          300 PLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLS  376 (672)
Q Consensus       300 pl~h~~~~~~~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~  376 (672)
                      |++|.+++...+.++..|+++++   +++..+.+.           ++++++|++.++|.++..+........       
T Consensus       208 p~~h~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~~~~l~~~~~~~~-------  269 (511)
T PRK13391        208 PLYHSAPQRAVMLVIRLGGTVIVMEHFDAEQYLAL-----------IEEYGVTHTQLVPTMFSRMLKLPEEVR-------  269 (511)
T ss_pred             CHHHHHHHHHHHHHHHcCceEEECCCCCHHHHHHH-----------HHHhCCeEEEehHHHHHHHHhCchhhc-------
Confidence            99999998888888999999998   444444444           999999999999999988765211100       


Q ss_pred             HHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCccc
Q 005874          377 KKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTE  456 (672)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE  456 (672)
                                                            .....+++|.+++||+++++++.+.+++.+++.+++.||+||
T Consensus       270 --------------------------------------~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE  311 (511)
T PRK13391        270 --------------------------------------DKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATE  311 (511)
T ss_pred             --------------------------------------ccCCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeecccc
Confidence                                                  011124899999999999999999999999999999999999


Q ss_pred             ccccccccCCC-CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCc
Q 005874          457 TCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMR  535 (672)
Q Consensus       457 ~~~~~~~~~~~-~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~g  535 (672)
                      +++++...... ....+++|.|.++ +++|+| +++...   +.|..|||+++|+ ++.||+++++.+++.+..+   ++
T Consensus       312 ~~~~~~~~~~~~~~~~~~vG~~~~g-~~~i~d-~~~~~~---~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~---~~  382 (511)
T PRK13391        312 GLGFTACDSEEWLAHPGTVGRAMFG-DLHILD-DDGAEL---PPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPD---GT  382 (511)
T ss_pred             ccceEEecCccccccCCCcCCcccc-eEEEEC-CCCCCC---CCCCceEEEEecC-cceEEcCChhHhHHhhccC---CC
Confidence            98765433222 2345789999999 699999 666554   4788999999999 8899999999999888621   49


Q ss_pred             eEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCCC---eEEEEEEcChhHHHH-
Q 005874          536 WFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHS---YCVALVVASQPAVEE-  611 (672)
Q Consensus       536 w~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~~---~~va~v~~~~~~~~~-  611 (672)
                      ||+|||+|++++||.+++.||.+|++|. +|++|+|.+||+++.+||.|.+++|++.+++.   .+++++++.++...+ 
T Consensus       383 w~~TGD~g~~~~~g~l~~~gR~~~~i~~-~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~  461 (511)
T PRK13391        383 WSTVGDIGYVDEDGYLYLTDRAAFMIIS-GGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGP  461 (511)
T ss_pred             EEecCCEEEECCCccEEEeccCCCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCCccc
Confidence            9999999999999999999999999996 69999999999999999999999999876553   488888876532111 


Q ss_pred             HHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874          612 WAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       612 ~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                      ...+....+++..|+.|+.|..|.++++.|      +|++||++|+.+++.|.+
T Consensus       462 ~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P------~t~~gKv~r~~l~~~~~~  509 (511)
T PRK13391        462 ALAAELIAFCRQRLSRQKCPRSIDFEDELP------RLPTGKLYKRLLRDRYWG  509 (511)
T ss_pred             chHHHHHHHHHhhcccCcCCcEEEEeecCC------CCCccceeHHHHHHHhhc
Confidence            011111256678999999999999999987      999999999999998864

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.9e-58  Score=514.37  Aligned_cols=514  Identities=25%  Similarity=0.342  Sum_probs=394.7

Q ss_pred             CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHh-cCCCCCCEEE
Q 005874           57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQ-LGHKKEERVA  135 (672)
Q Consensus        57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~-~g~~~g~~V~  135 (672)
                      ..++.++|++.++++|+++|+..            +++           .+||.||.++++++|..|.+ .|+++|++|+
T Consensus        22 ~~~l~~~l~~~a~~~p~~~a~~~------------~~~-----------~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~   78 (560)
T PRK08974         22 YQSLVDMFEQAVARYADQPAFIN------------MGE-----------VMTFRKLEERSRAFAAYLQNGLGLKKGDRVA   78 (560)
T ss_pred             cccHHHHHHHHHHhCCCCceEEE------------CCc-----------cccHHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence            46899999999999999999986            444           69999999999999999985 7999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCc--
Q 005874          136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIP--  213 (672)
Q Consensus       136 i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~--  213 (672)
                      ++++|++++++++|||++.|++++|+++..+.+.+.++++.++++.++++++..+.+.++.... ..+.++.......  
T Consensus        79 i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  157 (560)
T PRK08974         79 LMMPNLLQYPIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKT-PVKHVILTRMGDQLS  157 (560)
T ss_pred             EECCCCHHHHHHHHHHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhc-CcceEEEeccccccc
Confidence            9999999999999999999999999999999999999999999999999887666555543322 2233332211100  


Q ss_pred             cccc------------ccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHH
Q 005874          214 SAVS------------SVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA  281 (672)
Q Consensus       214 ~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~  281 (672)
                      ....            ...+.......++.+....+...........++++++|+|||||||.||+|.++|.+++..+..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~  237 (560)
T PRK08974        158 TAKGTLVNFVVKYIKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQ  237 (560)
T ss_pred             ccccccccchhhhcccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHH
Confidence            0000            0000000011223333332222221223346789999999999999999999999999887665


Q ss_pred             HHhhcC--CCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEee-CCcccccCchhhhhcccccccccccceeeecchHH
Q 005874          282 VMTIVP--DLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY-GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAI  357 (672)
Q Consensus       282 ~~~~~~--~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~-~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~  357 (672)
                      ....+.  ....++.++..+|++|.+++.. .+.++..|+++++ .++...        ..+...++++++|++.++|.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~--------~~~~~~i~~~~~t~~~~~p~~  309 (560)
T PRK08974        238 AKAAYGPLLHPGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDI--------PGFVKELKKYPFTAITGVNTL  309 (560)
T ss_pred             HHHhhccccCCCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCH--------HHHHHHHHhcCcceEcCcHHH
Confidence            443331  2345678899999999999765 5667888888776 222211        112223899999999999999


Q ss_pred             HHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHH
Q 005874          358 LDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQ  437 (672)
Q Consensus       358 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~  437 (672)
                      +..+.+....                                               .....+++|.+++||+++++.+.
T Consensus       310 ~~~l~~~~~~-----------------------------------------------~~~~~~~lr~~~~gg~~~~~~~~  342 (560)
T PRK08974        310 FNALLNNEEF-----------------------------------------------QELDFSSLKLSVGGGMAVQQAVA  342 (560)
T ss_pred             HHHHHhCcCc-----------------------------------------------ccCCccceeEEEecCccCCHHHH
Confidence            9988752110                                               00112379999999999999999


Q ss_pred             HHHHHHhCCceecccCcccccccccccCCCC-CCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccc
Q 005874          438 RFINICLGAPIGQGYGLTETCAGGTFSEVDD-SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGY  516 (672)
Q Consensus       438 ~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY  516 (672)
                      +.+++.+|+++++.||+||++..++....+. ...+++|.|+|+++++|+| +++..+   +.|+.|||+++|+.++.||
T Consensus       343 ~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~---~~g~~Gel~v~g~~~~~gy  418 (560)
T PRK08974        343 ERWVKLTGQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVPSTEIKLVD-DDGNEV---PPGEPGELWVKGPQVMLGY  418 (560)
T ss_pred             HHHHHHhCCcEEeeecccccCceeeccCCCCcccCCccccCcCCCEEEEEC-CCCCCC---CCCCceEEEEecCCcchhh
Confidence            9999988999999999999987665543322 2347899999999999999 666554   4788999999999999999


Q ss_pred             cCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCCC
Q 005874          517 FKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHS  596 (672)
Q Consensus       517 ~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~~  596 (672)
                      +++++.+++.|     .+|||+|||+|+++++|.++++||.+|+|++ +|++|+|.+||+++.++|+|.+++|++.+++.
T Consensus       419 ~~~~~~~~~~~-----~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~  492 (560)
T PRK08974        419 WQRPEATDEVI-----KDGWLATGDIAVMDEEGFLRIVDRKKDMILV-SGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEV  492 (560)
T ss_pred             cCChhhhhhhh-----hcCCcccCCEEEEcCCceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeeecCC
Confidence            99999998888     6789999999999999999999999999998 59999999999999999999999999976542


Q ss_pred             ---eEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHHHH
Q 005874          597 ---YCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLA  668 (672)
Q Consensus       597 ---~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~  668 (672)
                         .++++++..+..... ..  ....+.+.|+.++.|..++++++.|      +|++||++|+.|++......+
T Consensus       493 ~g~~~~~~v~~~~~~~~~-~~--l~~~l~~~l~~~~~P~~~~~~~~lP------~t~~GK~~r~~l~~~~~~~~~  558 (560)
T PRK08974        493 SGEAVKIFVVKKDPSLTE-EE--LITHCRRHLTGYKVPKLVEFRDELP------KSNVGKILRRELRDEARAKVD  558 (560)
T ss_pred             cceEEEEEEECCCCCCCH-HH--HHHHHHhhcccccCCcEEEEhhhCC------CCCCCcEeHHHHHHHHHhhhc
Confidence               366666654322111 11  1145568899999999999999887      999999999999998876654

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.6e-58  Score=506.35  Aligned_cols=475  Identities=21%  Similarity=0.259  Sum_probs=382.3

Q ss_pred             EeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEEC
Q 005874          106 WLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICG  185 (672)
Q Consensus       106 ~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~  185 (672)
                      .+||.|+.+.+.++|.+|.+.|+++|++|+++++|+++++++++||+++|++++|+++..+.+++.+++++++++.++++
T Consensus        11 ~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~   90 (502)
T PRK08276         11 VVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIVS   90 (502)
T ss_pred             EEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEEc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHhhhcCCC-CccEEEEecCCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCC
Q 005874          186 SKELKKLVDLSGQLD-TVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGL  264 (672)
Q Consensus       186 ~~~~~~l~~~~~~~~-~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~  264 (672)
                      +.....+.+.....+ ..+.++......            .....|++......    .......++.++++|||||||.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSGtTG~  154 (502)
T PRK08276         91 AALADTAAELAAELPAGVPLLLVVAGPV------------PGFRSYEEALAAQP----DTPIADETAGADMLYSSGTTGR  154 (502)
T ss_pred             cchhhHHHHHhhhccccccEEEEeCCCC------------CccccHHHHHhcCC----CCCCCCCCcceEEEECCCCCCC
Confidence            887776665554444 455555543211            11233454433221    1122355778999999999999


Q ss_pred             CceEEeehHHHHHHHH------HHHhhcCCCCCCcEEEEecChHhHHHHHHHHHHhHhCcEEee---CCcccccCchhhh
Q 005874          265 PKGVMMTHGNVLATVS------AVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKI  335 (672)
Q Consensus       265 PKgV~~th~~l~~~~~------~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~---~~~~~l~~~~~~~  335 (672)
                      ||+|+++|.++.....      .....+ ....++++++.+|++|..++...+.++..|+++.+   +++..+.+.    
T Consensus       155 PK~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----  229 (502)
T PRK08276        155 PKGIKRPLPGLDPDEAPGMMLALLGFGM-YGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALAL----  229 (502)
T ss_pred             CceEEEccCCcchhhhhHHhhhhhhhcc-cCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHH----
Confidence            9999999877653321      111112 23578899999999999998888889999999988   344445444    


Q ss_pred             hcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHH
Q 005874          336 KKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVR  415 (672)
Q Consensus       336 ~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  415 (672)
                             ++++++|++.++|+++..+.+.......                                             
T Consensus       230 -------i~~~~~t~~~~~P~~~~~l~~~~~~~~~---------------------------------------------  257 (502)
T PRK08276        230 -------IERYRVTHSQLVPTMFVRMLKLPEEVRA---------------------------------------------  257 (502)
T ss_pred             -------HHHhCCeEEEehHHHHHHHHhCccccCC---------------------------------------------
Confidence                   9999999999999999888753211000                                             


Q ss_pred             HHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCcccccccccccCCC-CCCCCccCCCcCCeEEEEEecCCCCcc
Q 005874          416 AILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGYL  494 (672)
Q Consensus       416 ~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~~G~p~~~~~v~i~d~~~~~~~  494 (672)
                      ....+++|.+++||+++++++.+.+.+.++.++++.||+||+++++...... ....+++|.|+ +++++|+| +++..+
T Consensus       258 ~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~  335 (502)
T PRK08276        258 RYDVSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD-EDGNEL  335 (502)
T ss_pred             CCCcccceEEEecCCCCCHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC-CCCCCC
Confidence            0112489999999999999999999998899999999999998755544322 23447899999 88999999 666654


Q ss_pred             cCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHH
Q 005874          495 TSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKV  574 (672)
Q Consensus       495 ~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~i  574 (672)
                         +.|+.|||+++|+.++.||+++++.+.+.+.    .+|||+|||+|+++++|.+++.||.||++|. +|++|+|.+|
T Consensus       336 ---~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~----~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~-~G~~v~~~~i  407 (502)
T PRK08276        336 ---PPGEIGTVYFEMDGYPFEYHNDPEKTAAARN----PHGWVTVGDVGYLDEDGYLYLTDRKSDMIIS-GGVNIYPQEI  407 (502)
T ss_pred             ---cCCCceEEEEECCCccchhcCCHHHHHHHhc----CCCceeecceEEEcCCcCEEEeccCcceEEe-CCEEeCHHHH
Confidence               4788999999999999999999999999987    6699999999999999999999999999997 6999999999


Q ss_pred             HHHHhcCcccceEEEEecCCC---CeEEEEEEcChhHHHHHH-HHcChhhhhcCCCCCcceeEEEEeecCCCCCCCcccc
Q 005874          575 EAALIVSPYVDNIMMHADPFH---SYCVALVVASQPAVEEWA-AKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTA  650 (672)
Q Consensus       575 E~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~~~~~~~~-~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~  650 (672)
                      |+++.++|+|.+|+|++..++   +.++++|++++....... .+.....++.+|+.++.|+.+++++++|      +|+
T Consensus       408 E~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~~~~lP------~t~  481 (502)
T PRK08276        408 ENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLRGRLAHYKCPRSIDFEDELP------RTP  481 (502)
T ss_pred             HHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCCCChhhHHHHHHHHHhhccCCCCCcEEEEecCCC------CCc
Confidence            999999999999999998765   369999998754221110 1111256678999999999999999987      999


Q ss_pred             ccccChHHHHHHHHHHHHh
Q 005874          651 ALKIKREAIRKAFADDLAR  669 (672)
Q Consensus       651 ~gKi~R~~l~~~~~~~i~~  669 (672)
                      +||++|++|++.|-+.-++
T Consensus       482 ~GKi~r~~L~~~~~~~~~~  500 (502)
T PRK08276        482 TGKLYKRRLRDRYWEGRQR  500 (502)
T ss_pred             ccchhHHHHHHHHHhhhhh
Confidence            9999999999998776543

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.4e-58  Score=516.99  Aligned_cols=508  Identities=21%  Similarity=0.242  Sum_probs=362.7

Q ss_pred             CHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEc
Q 005874           59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFA  138 (672)
Q Consensus        59 tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~  138 (672)
                      ++.++|++.+..+|+++|+.+.+..        .+.      .+.++.+||+||..++.++|.+|.+.| .+||+|++++
T Consensus         2 s~~~~l~~~a~~~p~~~a~~~~~~~--------~~~------~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~   66 (578)
T PRK05850          2 SVPSLLRERASLQPDDAAFTFIDYE--------QDP------AGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILA   66 (578)
T ss_pred             cHHHHHHHHHhcCCCceEEEEEccC--------CCC------CCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEc
Confidence            6889999999999999999864210        000      123468999999999999999999999 6899999999


Q ss_pred             CCCHHHHHHHHHHHhCCcEEEecCC---CCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCC--CccEEEEecCCCc
Q 005874          139 DTRAEWFVALQGCFRRNVTVVTIYA---SLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLD--TVKHVICMDANIP  213 (672)
Q Consensus       139 ~ns~e~~~~~lA~~~~G~~~vpl~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~--~l~~ii~~~~~~~  213 (672)
                      +|+++|++++|||+++|++++|+++   ..+.+++.++++++++++++++++..+.+.+......  ....++.++..  
T Consensus        67 ~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  144 (578)
T PRK05850         67 PQGLEYIVAFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL--  144 (578)
T ss_pred             CCcccHHHHHHHHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc--
Confidence            9999999999999999999999997   4578899999999999999999887766654322111  11112221110  


Q ss_pred             ccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCC-----
Q 005874          214 SAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPD-----  288 (672)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~-----  288 (672)
                                        ++   ............++++++|+|||||||.||||+++|+++++.+......+..     
T Consensus       145 ------------------~~---~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~  203 (578)
T PRK05850        145 ------------------DL---DSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGV  203 (578)
T ss_pred             ------------------cc---ccCCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccC
Confidence                              00   0000011123456899999999999999999999999999887665543211     


Q ss_pred             CCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHH-HHHH
Q 005874          289 LGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVR-DGVR  366 (672)
Q Consensus       289 ~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~-~~~~  366 (672)
                      ...++++++++|++|.++++. .+.+++.|+++++.++..+...    +..+...++++++++. .+|..+..+. ....
T Consensus       204 ~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~----p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~  278 (578)
T PRK05850        204 PPPDTTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQR----PARWMQLLASNPHAFS-AAPNFAFELAVRKTS  278 (578)
T ss_pred             CCCcceEEEECCCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHC----HHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcc
Confidence            456889999999999999876 7778999999998543322111    1112223888998865 5555443332 2110


Q ss_pred             HhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhC-
Q 005874          367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLG-  445 (672)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-  445 (672)
                      ..                                            .......+++|.+++||+++++++.+.|...++ 
T Consensus       279 ~~--------------------------------------------~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~  314 (578)
T PRK05850        279 DD--------------------------------------------DMAGLDLGGVLGIISGSERVHPATLKRFADRFAP  314 (578)
T ss_pred             hh--------------------------------------------hhcCcchhhheeEEECcCCCCHHHHHHHHHHHHh
Confidence            00                                            000011237999999999999999999888763 


Q ss_pred             -----CceecccCcccccccccccCCCCC-------------------------CCCccCCCcCCeEEEEEecCCCCccc
Q 005874          446 -----APIGQGYGLTETCAGGTFSEVDDS-------------------------SVGRVGAPLPCSFIKLIDWPEGGYLT  495 (672)
Q Consensus       446 -----~~v~~~YG~TE~~~~~~~~~~~~~-------------------------~~~~~G~p~~~~~v~i~d~~~~~~~~  495 (672)
                           ..+++.||+||++..+........                         ...++|.|. +.+++|+|.+++..  
T Consensus       315 ~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~--  391 (578)
T PRK05850        315 FNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVDPDTCIE--  391 (578)
T ss_pred             cCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEcCCCCcC--
Confidence                 368999999998755443211100                         012345553 57999999444444  


Q ss_pred             CCCCCCccEEEEccCcccccccCCchhhhhhcccC-------CCCCceEecCcEEEEccCceEEEEecCCCeEecCCcee
Q 005874          496 SDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVD-------DKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEY  568 (672)
Q Consensus       496 ~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~-------~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~  568 (672)
                       ++.|+.|||+|+|++++.||+++|+.|++.|..+       ...+|||+|||+|+++ ||.|+++||++|+||+ +|++
T Consensus       392 -~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~-~G~~  468 (578)
T PRK05850        392 -CPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIV-DGRN  468 (578)
T ss_pred             -CCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEE-CCee
Confidence             4588999999999999999999999999998531       1135799999999998 9999999999999997 6999


Q ss_pred             eccHHHHHHHhcCcccceEEEEecCCC--CeEEEEEEcChhHHHHHHH----HcChhhhhcCCCC--CcceeEEEEee--
Q 005874          569 VSLGKVEAALIVSPYVDNIMMHADPFH--SYCVALVVASQPAVEEWAA----KQGIVGKNARLDK--FEIPAKIKLLS--  638 (672)
Q Consensus       569 v~p~~iE~~l~~~~~V~~~~V~g~~~~--~~~va~v~~~~~~~~~~~~----~~~~~~~~~~L~~--~~~p~~i~~~~--  638 (672)
                      |+|.+||+++.+||.+. ++|++.+++  +.++|+|++++....+...    ......+...|+.  ...|..+.+++  
T Consensus       469 i~p~eIE~~l~~~~~~~-~~v~~v~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~~  547 (578)
T PRK05850        469 HYPDDIEATIQEITGGR-VAAISVPDDGTEKLVAIIELKKRGDSDEEAMDRLRTVKREVTSAISKSHGLSVADLVLVAPG  547 (578)
T ss_pred             cCHHHHHHHHHHhcCCc-EEEEEecCCCceEEEEEEEeccccCcchhhhhhHHHHHHHHHHHHHHHhCCCceEEEEeCCC
Confidence            99999999999999864 777776654  4588999876543211000    0000122222322  23566777775  


Q ss_pred             cCCCCCCCccccccccChHHHHHHHHHH
Q 005874          639 YPWTSEAGLVTAALKIKREAIRKAFADD  666 (672)
Q Consensus       639 ~~~~~~~~~~t~~gKi~R~~l~~~~~~~  666 (672)
                      ..|      +|++||++|++|+++|++.
T Consensus       548 ~iP------~t~~GKi~R~~l~~~~~~~  569 (578)
T PRK05850        548 SIP------ITTSGKIRRAACVEQYRQD  569 (578)
T ss_pred             CcC------CCCCchHHHHHHHHHHHcC
Confidence            344      9999999999999999764

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-57  Score=534.07  Aligned_cols=491  Identities=18%  Similarity=0.175  Sum_probs=364.2

Q ss_pred             CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874           55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV  134 (672)
Q Consensus        55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V  134 (672)
                      +...|+.++|+++++++||++|+.+            +++           .+||+||.++++++|++|.++|+++|++|
T Consensus       444 ~~~~sl~~ll~~~a~~~pd~~Al~~------------~~~-----------~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~V  500 (994)
T PRK07868        444 HTRISLGRIIAEQARDAPKGEFLLF------------DGR-----------VHTYEAVNRRINNVVRGLIAVGVRQGDRV  500 (994)
T ss_pred             CCCccHHHHHHHHHHHCCCCeEEEe------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence            4456899999999999999999986            444           69999999999999999999999999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcc
Q 005874          135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS  214 (672)
Q Consensus       135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~  214 (672)
                      +|+++|+++++++++||+++|++++|++|.   +++.++++.++++++|++.+..+.+.+.      ...+++++.....
T Consensus       501 aI~~~n~~e~v~a~lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~------~~~iiv~~~~~~~  571 (994)
T PRK07868        501 GVLMETRPSALVAIAALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL------PGRVLVLGGGESR  571 (994)
T ss_pred             EEEcCCCHHHHHHHHHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc------CceEEEecCCccc
Confidence            999999999999999999999999999985   6899999999999999998776655332      1344554432110


Q ss_pred             cccccccCCCeEEEeHHHHHhcccCCC--CCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCC
Q 005874          215 AVSSVEQSGRWKITSFADVQILGRENP--VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSK  292 (672)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~  292 (672)
                      ... ..  .......++++.......+  ..+....++++++|+|| ||||.||++.++|.+...........+ .+.++
T Consensus       572 ~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~-~l~~~  646 (994)
T PRK07868        572 DLD-LP--DDADVIDMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAA-ALDRR  646 (994)
T ss_pred             ccc-CC--cchhhhhhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhc-CCCCC
Confidence            000 00  0000111111111000000  01112236899999998 688888888888877665544444455 78899


Q ss_pred             cEEEEecChHhHHHHHHHHHH-hHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHh
Q 005874          293 DVYLAYLPLAHVLELVAENLI-AGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKK  368 (672)
Q Consensus       293 d~~l~~~pl~h~~~~~~~~~~-l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~  368 (672)
                      |++++.+|++|++++...+.+ +..|+++++   +++..+.+.           ++++++|+++++|+++..|.+.....
T Consensus       647 d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~-----------I~~~~vT~~~~~Ps~l~~L~~~~~~~  715 (994)
T PRK07868        647 DTVYCLTPLHHESGLLVSLGGAVVGGSRIALSRGLDPDRFVQE-----------VRQYGVTVVSYTWAMLREVVDDPAFV  715 (994)
T ss_pred             CeEEEecChHHHhHHHHHHHHHhccceEEEecCCCCHHHHHHH-----------HHHhCCcEEEeHHHHHHHHHhCcCCc
Confidence            999999999999999875544 556666655   445555555           99999999999999998887621100


Q ss_pred             hhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhC-Cc
Q 005874          369 VDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLG-AP  447 (672)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~  447 (672)
                                                                     ....+++|.++  |+.+++++.+.+.+.++ ++
T Consensus       716 -----------------------------------------------~~~~~slr~~~--g~gl~~~l~~~~~~~~~~~~  746 (994)
T PRK07868        716 -----------------------------------------------LHGNHPVRLFI--GSGMPTGLWERVVEAFAPAH  746 (994)
T ss_pred             -----------------------------------------------cCCCCceEEEe--cCCCCHHHHHHHHHHhCchh
Confidence                                                           00113788876  34499999999999886 88


Q ss_pred             eecccCcccccccccccCCCCCCCCccCCCcCCe-EEEEEec---------CCCCcccCCCCCCccEEEEccCccccccc
Q 005874          448 IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCS-FIKLIDW---------PEGGYLTSDSPMPRGEIVIAGPNVTVGYF  517 (672)
Q Consensus       448 v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~-~v~i~d~---------~~~~~~~~~~~g~~GEi~v~g~~v~~gY~  517 (672)
                      ++++||+||++.....  ....+.+++|.|+|++ +++|.+.         ++.++...++.|+.|||+++|+..    +
T Consensus       747 l~~~YG~TE~~~~~~~--~~~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~----~  820 (994)
T PRK07868        747 VVEFFATTDGQAVLAN--VSGAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGP----I  820 (994)
T ss_pred             eeeeeecccccccccc--cCCCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCC----C
Confidence            9999999998754332  2234568999999998 7777521         122222224678999999999864    3


Q ss_pred             CCchhhhh--hcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC
Q 005874          518 KNEEKTKE--VYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH  595 (672)
Q Consensus       518 ~~~~~t~~--~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~  595 (672)
                       +|+.+..  .|.   +++|||+|||+|++|+||.|+|+||+||+||. +|++|+|+|||++|.+||.|.+|+|++.+++
T Consensus       821 -~p~~t~~~~~~~---~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~-~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~  895 (994)
T PRK07868        821 -DPTASVKRGVFA---PADTWISTEYLFRRDDDGDYWLVDRRGSVIRT-ARGPVYTEPVTDALGRIGGVDLAVTYGVEVG  895 (994)
T ss_pred             -ChhhhhHhcccc---cCCEEEeccceEEEcCCCCEEEeccCCCEEEe-CCceEcHHHHHHHHhcCCCeeEEEEEeecCC
Confidence             4544332  242   15899999999999999999999999999997 5889999999999999999999999997655


Q ss_pred             --CeEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHH
Q 005874          596 --SYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKA  662 (672)
Q Consensus       596 --~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~  662 (672)
                        +.++|+|+++++...+...  ...+++ .|+.|++|+.|+++++.|      +|++||++|++|++.
T Consensus       896 ~~~~~~a~Vv~~~~~~~~~~~--L~~~l~-~l~~y~vP~~i~~v~~lP------~T~sGKi~r~~L~~~  955 (994)
T PRK07868        896 GRQLAVAAVTLRPGAAITAAD--LTEALA-SLPVGLGPDIVHVVPEIP------LSATYRPTVSALRAA  955 (994)
T ss_pred             CCceEEEEEEeCCCCcCCHHH--HHHHHH-hCCCCcCCeEEEEeCCCC------CCccccEehHHHHhc
Confidence              4689999987653211111  114444 499999999999999988      999999999999764

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=5.7e-58  Score=503.66  Aligned_cols=454  Identities=18%  Similarity=0.149  Sum_probs=332.2

Q ss_pred             cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccc------hHHHHhhhcCCCCccEEEEecCC
Q 005874          138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKE------LKKLVDLSGQLDTVKHVICMDAN  211 (672)
Q Consensus       138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~------~~~l~~~~~~~~~l~~ii~~~~~  211 (672)
                      ++|++|+++++|||+++|++++|+++.++.+++.+++++++++++|+++..      .+.+.+.....+ .+.++.....
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~   79 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAP-AKAIVLPAAG   79 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhccc-ceEEEEeccC
Confidence            589999999999999999999999999999999999999999999998642      222222222212 2333332111


Q ss_pred             CcccccccccCCCeEEEeHHHHHhcccC------CCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhh
Q 005874          212 IPSAVSSVEQSGRWKITSFADVQILGRE------NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI  285 (672)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~  285 (672)
                      .....   .  ......+|+++...+..      ....+....++++++|+|||||||.||||++||+|+++........
T Consensus        80 ~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~  154 (499)
T PLN03051         80 EPVAV---P--LREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAH  154 (499)
T ss_pred             cccCC---c--cccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHh
Confidence            10000   0  00012346666532211      0111112356899999999999999999999999998776555555


Q ss_pred             cCCCCCCcEEEEecChHhHHHHHHHHHHhHhCcEEeeCC----cccccCchhhhhcccccccccccceeeecchHHHHHH
Q 005874          286 VPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGT----PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRV  361 (672)
Q Consensus       286 ~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~----~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l  361 (672)
                      + .++.+|++++.+|++|.+++...+.++..|+++++.+    +..+++.           ++++++|++.++|+++..|
T Consensus       155 ~-~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~-----------i~~~~vt~~~~vP~~~~~l  222 (499)
T PLN03051        155 M-DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKF-----------VQDAGVTVLGLVPSIVKAW  222 (499)
T ss_pred             c-CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHH-----------HHHhCCcEEEeCHHHHHHH
Confidence            6 7889999999999999999877778899999998832    3334444           9999999999999999988


Q ss_pred             HHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHH
Q 005874          362 RDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFIN  441 (672)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~  441 (672)
                      .+......                                             .....++||.+++||++++++..++++
T Consensus       223 ~~~~~~~~---------------------------------------------~~~~~~~Lr~i~~gG~~~~~~~~~~~~  257 (499)
T PLN03051        223 RHTGAFAM---------------------------------------------EGLDWSKLRVFASTGEASAVDDVLWLS  257 (499)
T ss_pred             HhcCcccc---------------------------------------------ccCCchhheEEEecCCCCCHHHHHHHH
Confidence            65210000                                             001113799999999999999988887


Q ss_pred             HHh--CCceecccCcccccccccccC-CCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCC--CccEEEEccCcc--cc
Q 005874          442 ICL--GAPIGQGYGLTETCAGGTFSE-VDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPM--PRGEIVIAGPNV--TV  514 (672)
Q Consensus       442 ~~~--~~~v~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g--~~GEi~v~g~~v--~~  514 (672)
                      +.+  +++++++||+||++...+... ......+++|.|.++++++|+| ++++.++   .|  +.|||+++||.+  +.
T Consensus       258 ~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~---~g~~~~Gel~v~g~~~~~~~  333 (499)
T PLN03051        258 SVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVPYP---DDQPCVGEVALAPPMLGASD  333 (499)
T ss_pred             HhccccceeEeeeccccccceeecccccCCCCCccccCCCCCceEEEEC-CCCCCCC---CCCCcceEEEEecCcCCCCc
Confidence            743  478999999999865433222 1223457899999999999999 6776654   44  589999999987  58


Q ss_pred             cccCCchhhhhhcccC-----CCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhc-CcccceEE
Q 005874          515 GYFKNEEKTKEVYKVD-----DKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIV-SPYVDNIM  588 (672)
Q Consensus       515 gY~~~~~~t~~~~~~~-----~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~-~~~V~~~~  588 (672)
                      ||++++ .++ .+...     .++.+||+|||+|++|+||.|+|+||+||+||. +|++|+|.|||++|.+ ||+|.+|+
T Consensus       334 gy~~~~-~~~-~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~-~G~~v~p~EIE~~l~~~~p~V~~aa  410 (499)
T PLN03051        334 RLLNAD-HDK-VYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNL-GGIKTSSVEIERACDRAVAGIAETA  410 (499)
T ss_pred             cccCCc-ccc-eeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEee-CCEECCHHHHHHHHHhcCCCcceEE
Confidence            999765 333 33211     023458999999999999999999999999997 6999999999999985 99999999


Q ss_pred             EEecCCC----CeEEEEE---EcChhH--H-HHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHH
Q 005874          589 MHADPFH----SYCVALV---VASQPA--V-EEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREA  658 (672)
Q Consensus       589 V~g~~~~----~~~va~v---~~~~~~--~-~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~  658 (672)
                      |++.+++    +.++|+|   +++++.  . .+.........+.++|+.+.+|..|.++++.|      +|++||++|++
T Consensus       411 vvg~~d~~~g~~~~~a~v~~~v~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~i~~v~~lP------~t~~GKi~r~~  484 (499)
T PLN03051        411 AVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNPLFKVSRVKIVPELP------RNASNKLLRRV  484 (499)
T ss_pred             EEEecCCCCCceEEEEEEEcceecccccccchHHHHHHHHHHHHhhcCCccCCceEEEcCCCC------CCCCccHHHHH
Confidence            9997654    3588888   665442  1 11111110133456798877887899999987      99999999999


Q ss_pred             HHHHHHHHH
Q 005874          659 IRKAFADDL  667 (672)
Q Consensus       659 l~~~~~~~i  667 (672)
                      |++.+.+..
T Consensus       485 L~~~~~~~~  493 (499)
T PLN03051        485 LRDQLKKEL  493 (499)
T ss_pred             HHHHHHHhh
Confidence            999887654

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.3e-56  Score=495.48  Aligned_cols=477  Identities=23%  Similarity=0.238  Sum_probs=373.4

Q ss_pred             EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEE
Q 005874          105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVIC  184 (672)
Q Consensus       105 ~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~  184 (672)
                      +.+||.||.++++++|.+|.+.|+++|++|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++.+++
T Consensus        10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~   89 (509)
T PRK12406         10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA   89 (509)
T ss_pred             eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccchHHHHhhhcCCCCccEEEEecCCCc-cccccccc---CCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecC
Q 005874          185 GSKELKKLVDLSGQLDTVKHVICMDANIP-SAVSSVEQ---SGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSG  260 (672)
Q Consensus       185 ~~~~~~~l~~~~~~~~~l~~ii~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSG  260 (672)
                      +......+.+...   ....++....... ........   .......+|+++.....    +......+++++++||||
T Consensus        90 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSG  162 (509)
T PRK12406         90 HADLLHGLASALP---AGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE----PYDGPPVPQPQSMIYTSG  162 (509)
T ss_pred             ccchhhhhhhhhh---cccceeecccccccccccccccccccCCCCccCHHHHhcccC----ccCCCCCCCceEEEECCC
Confidence            9877665543321   1112222221100 00000000   00112234555543221    122345689999999999


Q ss_pred             CCCCCceEEeehHHH---HHHHHHHHhhcCCCCCCcEEEEecChHhHHHHHHHHHHhHhCcEEeeC---CcccccCchhh
Q 005874          261 STGLPKGVMMTHGNV---LATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYG---TPLTLTDTSSK  334 (672)
Q Consensus       261 TTG~PKgV~~th~~l---~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~---~~~~l~~~~~~  334 (672)
                      |||.||+|+++|.+.   .+........+ ++.++|++++.+|++|..+....+.++..|+++++.   ++..+.+.   
T Consensus       163 tTG~PK~v~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---  238 (509)
T PRK12406        163 TTGHPKGVRRAAPTPEQAAAAEQMRALIY-GLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELLQL---  238 (509)
T ss_pred             CCCCCceEEEechhHHHHHHHHHhhhhhc-CCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHHHH---
Confidence            999999999876554   33333334445 788999999999999998887777788899999883   34444444   


Q ss_pred             hhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHH
Q 005874          335 IKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKV  414 (672)
Q Consensus       335 ~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  414 (672)
                              ++++++|++.++|.++..+++......                                             
T Consensus       239 --------l~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------------------------  265 (509)
T PRK12406        239 --------IERHRITHMHMVPTMFIRLLKLPEEVR---------------------------------------------  265 (509)
T ss_pred             --------HHHcCCeEEEccHHHHHHHHhCchhhc---------------------------------------------
Confidence                    999999999999999998875321100                                             


Q ss_pred             HHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCcccccccccccCCC-CCCCCccCCCcCCeEEEEEecCCCCc
Q 005874          415 RAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGY  493 (672)
Q Consensus       415 ~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~~G~p~~~~~v~i~d~~~~~~  493 (672)
                      +....+++|.+++||+++++++.+.+.+.+++.+++.||+||++.+++....+ ....+++|.|.++++++|+| +++..
T Consensus       266 ~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~  344 (509)
T PRK12406        266 AKYDVSSLRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGRP  344 (509)
T ss_pred             ccCCCCceeEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEEC-CCCCC
Confidence            00112489999999999999999999999999999999999998765543322 23457899999999999999 66654


Q ss_pred             ccCCCCCCccEEEEccCcccc-cccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccH
Q 005874          494 LTSDSPMPRGEIVIAGPNVTV-GYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLG  572 (672)
Q Consensus       494 ~~~~~~g~~GEi~v~g~~v~~-gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~  572 (672)
                      +   +.|..|||+++|++++. ||+++++.+.+.+     .+|||+|||+|++++||.+++.||.+|++|. +|++|+|.
T Consensus       345 ~---~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~-----~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~-~G~~v~~~  415 (509)
T PRK12406        345 L---PQGEIGEIYSRIAGNPDFTYHNKPEKRAEID-----RGGFITSGDVGYLDADGYLFLCDRKRDMVIS-GGVNIYPA  415 (509)
T ss_pred             C---CCCCceEEEEECCccccccccCCchhccccc-----CCCCeEEccEEEEcCCceEEEeecccceEEE-CCEEECHH
Confidence            4   47889999999999875 9999998887765     7899999999999999999999999999996 69999999


Q ss_pred             HHHHHHhcCcccceEEEEecCCC---CeEEEEEEcChhHH--HHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCc
Q 005874          573 KVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQPAV--EEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGL  647 (672)
Q Consensus       573 ~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~~~~--~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~  647 (672)
                      +||+++.++|+|.+++|++.++.   ..++++|++++...  .+...    ..+.+.|+.|++|..+.++++.|      
T Consensus       416 ~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~----~~l~~~l~~~~~P~~i~~~~~iP------  485 (509)
T PRK12406        416 EIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATLDEADIR----AQLKARLAGYKVPKHIEIMAELP------  485 (509)
T ss_pred             HHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCCCCCCHHHHH----HHHHHhcccCCCCcEEEEeccCC------
Confidence            99999999999999999997765   34888888765421  11111    55678999999999999999987      


Q ss_pred             cccccccChHHHHHHHHH
Q 005874          648 VTAALKIKREAIRKAFAD  665 (672)
Q Consensus       648 ~t~~gKi~R~~l~~~~~~  665 (672)
                      +|++||++|++|++.|..
T Consensus       486 ~t~~GK~~r~~L~~~~~~  503 (509)
T PRK12406        486 REDSGKIFKRRLRDPYWA  503 (509)
T ss_pred             CCCccchhHHHHHHHHHh
Confidence            999999999999988765

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=4.9e-57  Score=477.20  Aligned_cols=505  Identities=22%  Similarity=0.275  Sum_probs=399.2

Q ss_pred             HHHHHHHHHHH-cCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEc
Q 005874           60 LAELFEQSCKE-HGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFA  138 (672)
Q Consensus        60 l~~~~~~~a~~-~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~  138 (672)
                      ....+.+..+. -++.+++.++..         ++        ++...+||.|+.+++.++|..|.+.|+++||+|++++
T Consensus        66 ~~n~~~~~~~~~~~~~~a~~~~~~---------~~--------~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~m  128 (626)
T KOG1175|consen   66 CYNCLDRHIKEKGGDKVAIIFEGN---------EG--------GDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYM  128 (626)
T ss_pred             hHhhhhhhhhhcCCCCcEEEEEec---------CC--------CceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence            33445555444 489999998631         22        2333499999999999999999988999999999999


Q ss_pred             CCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchH---------HHHhhhcCCC-----CccE
Q 005874          139 DTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELK---------KLVDLSGQLD-----TVKH  204 (672)
Q Consensus       139 ~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~l~~~~~~~~-----~l~~  204 (672)
                      |+.+|++++++||.++|++.+++-...++.++...++.++++++|+.+....         ...+.....+     ..+.
T Consensus       129 Pm~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~  208 (626)
T KOG1175|consen  129 PMIPEAVIAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLD  208 (626)
T ss_pred             cCChHHHHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhccccccccccee
Confidence            9999999999999999999999999999999999999999999999875331         1111111111     1111


Q ss_pred             EEEecCCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHH-HHHHHHHH
Q 005874          205 VICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNV-LATVSAVM  283 (672)
Q Consensus       205 ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l-~~~~~~~~  283 (672)
                      +++.+              ..+...|+++...... ..++.....+|+.+|+|||||||.||++.+|+..- +..+....
T Consensus       209 ~~~~~--------------~~~d~~~~~~~~~a~~-~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~  273 (626)
T KOG1175|consen  209 LIVSR--------------RNRDLFWSLELKKASP-EHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSR  273 (626)
T ss_pred             eEEec--------------ccccccHHHHhhhcCC-CCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcc
Confidence            11111              1113345555443332 22366778899999999999999999999987644 44445555


Q ss_pred             hhcCCCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEee--C---CcccccCchhhhhcccccccccccceeeecchHH
Q 005874          284 TIVPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY--G---TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAI  357 (672)
Q Consensus       284 ~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~--~---~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~  357 (672)
                      ..+ .++++|++.++..+.|+.+.+. .+.+|..|+++++  +   ++..+++.           +.++++|++++.|+.
T Consensus       274 ~~~-d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~-----------v~k~~it~l~t~pt~  341 (626)
T KOG1175|consen  274 YHF-DLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKI-----------LDKYKVTVLYTAPTA  341 (626)
T ss_pred             eec-cCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhh-----------HhhcceEEEEeccHH
Confidence            556 9999999999999999999777 5668999999999  3   44455555           999999999999999


Q ss_pred             HHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHH
Q 005874          358 LDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQ  437 (672)
Q Consensus       358 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~  437 (672)
                      ++.|.....+......                                             .++||.+.++|+|++++..
T Consensus       342 ~r~l~~~~~~~~~~~~---------------------------------------------~~sLk~~~S~Gepi~~~~~  376 (626)
T KOG1175|consen  342 YRLLRRLGQEDVTSYS---------------------------------------------LKSLRTCGSVGEPINPEAW  376 (626)
T ss_pred             HHHHHHhccccccccc---------------------------------------------cceEEEEeecCccCCcchH
Confidence            9988764333221111                                             0279999999999999999


Q ss_pred             HHHHHHhCC-ceecccCcccccccccccCCCC--CCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccC---c
Q 005874          438 RFINICLGA-PIGQGYGLTETCAGGTFSEVDD--SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP---N  511 (672)
Q Consensus       438 ~~~~~~~~~-~v~~~YG~TE~~~~~~~~~~~~--~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~---~  511 (672)
                      +++...++. +|++.||+||++..+.......  ...+++|.|.+++.+.|.| ++|+.++.  ....|||+++.+   +
T Consensus       377 ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-e~g~~~~~--~~~~G~l~~~~~~P~~  453 (626)
T KOG1175|consen  377 EWWKRVTGLDPIYETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILD-ENGNELPP--STGNGELRLKPPWPPG  453 (626)
T ss_pred             HHHHHhcCccchhhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEEC-CCCCCcCC--CCceeEEEEeCCCCcc
Confidence            999999987 6999999999998887776655  6779999999999999999 67777752  228999999884   6


Q ss_pred             ccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEe
Q 005874          512 VTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHA  591 (672)
Q Consensus       512 v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g  591 (672)
                      .+++||+|++.-.....  .+-.|+|.|||.|++|+||.+++.||.||++++ +|.++++.|||+++.+||.|.|++|+|
T Consensus       454 ~~r~~~~n~erf~~~yf--~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNv-sGhRigtaEIE~al~~hp~VaEsAvVg  530 (626)
T KOG1175|consen  454 MFRTLWGNHERFRAAYF--KKFPGYYFTGDGGRRDEDGYYWILGRVDDVINV-SGHRIGTAEIESALVEHPAVAESAVVG  530 (626)
T ss_pred             ccccccCCHHHhhhhhc--ccCCceEEecCceEEcCCceEEEEecccccccc-cceeecHHHHHHHHhhCcchhheeeec
Confidence            79999999994333332  013689999999999999999999999999997 599999999999999999999999999


Q ss_pred             cCCC---CeEEEEEEcChhHHHH-HHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874          592 DPFH---SYCVALVVASQPAVEE-WAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       592 ~~~~---~~~va~v~~~~~~~~~-~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                      .+++   +.++|||+++++.... ...++....+++.+.++..|+.|++++.+|      +|.+||+-|+.||+....
T Consensus       531 ~p~~~~ge~v~aFvvl~~g~~~~~~L~kel~~~VR~~igp~a~P~~I~~v~~LP------kTrSGKimRr~lrki~~g  602 (626)
T KOG1175|consen  531 SPDPIKGEVVLAFVVLKSGSHDPEQLTKELVKHVRSVIGPYAVPRLIVFVPGLP------KTRSGKIMRRALRKIASG  602 (626)
T ss_pred             CCCCCCCeEEEEEEEEcCCCCChHHHHHHHHHHHHhhcCcccccceeEecCCCC------ccccchhHHHHHHHHhcc
Confidence            8877   4699999999875322 222233378889999999999999999998      999999999999987643

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=3.7e-56  Score=482.41  Aligned_cols=431  Identities=25%  Similarity=0.320  Sum_probs=353.8

Q ss_pred             eHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECcc
Q 005874          108 TYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK  187 (672)
Q Consensus       108 Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~  187 (672)
                      ||+|+.++++++|..|.+.|+++||+|+|+++|+++++++++||+++|++++|+++..+.+.+..++++++++.+++++.
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL   80 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             chHHHHhhhcCCCCccEEEEecCCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCce
Q 005874          188 ELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKG  267 (672)
Q Consensus       188 ~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKg  267 (672)
                      .....         .                       ....+.++................+++++++|||||||.||+
T Consensus        81 ~~~~~---------~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~  128 (436)
T TIGR01923        81 LEEKD---------F-----------------------QADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKA  128 (436)
T ss_pred             ccccc---------e-----------------------eecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcE
Confidence            32110         0                       000111111111111111223456789999999999999999


Q ss_pred             EEeehHHHHHHHHHHHhhcCCCCCCcEEEEecChHhHHHHHHHHHHhHhCcEEeeCCcc-cccCchhhhhcccccccccc
Q 005874          268 VMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPL-TLTDTSSKIKKGTQGDASVL  346 (672)
Q Consensus       268 V~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~-~l~~~~~~~~~~~~~~i~~~  346 (672)
                      |+++|+++...+......+ +++++|++++.+|++|..++...+.++..|+++++.++. .+.+           .++++
T Consensus       129 v~~s~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~-----------~l~~~  196 (436)
T TIGR01923       129 VPHTFRNHYASAVGSKENL-GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFNQLLE-----------MIANE  196 (436)
T ss_pred             EEEehHHHHHHHHHHHhhc-CCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchHHHHHH-----------HHHHh
Confidence            9999999999988888888 899999999999999999988788899999999985432 3333           39999


Q ss_pred             cceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEE
Q 005874          347 RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFIL  426 (672)
Q Consensus       347 k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~  426 (672)
                      ++|++.++|.++..+.+....                                                   ..++|.++
T Consensus       197 ~~t~~~~~P~~l~~l~~~~~~---------------------------------------------------~~~l~~~~  225 (436)
T TIGR01923       197 RVTHISLVPTQLNRLLDEGGH---------------------------------------------------NENLRKIL  225 (436)
T ss_pred             CCeEEEeHHHHHHHHHhCcCC---------------------------------------------------CCceEEEE
Confidence            999999999999888653110                                                   02799999


Q ss_pred             EcCCCCCHHHHHHHHHHhCCceecccCcccccccccccCCCC-CCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEE
Q 005874          427 SGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDD-SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEI  505 (672)
Q Consensus       427 ~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi  505 (672)
                      +||+++++++.++++. .++++++.||+||++...+...... ....++|.|++++++++.+.+         .++.|||
T Consensus       226 ~~G~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~---------~~~~Gel  295 (436)
T TIGR01923       226 LGGSAIPAPLIEEAQQ-YGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKVDN---------KEGHGEI  295 (436)
T ss_pred             ECCCCCCHHHHHHHHH-hCCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEeCC---------CCCceEE
Confidence            9999999999998876 4999999999999987655443322 122359999999999995412         1257999


Q ss_pred             EEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccc
Q 005874          506 VIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVD  585 (672)
Q Consensus       506 ~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~  585 (672)
                      +++|+.++.||+++++.+...+     .+|||+|||+|++++||.+++.||.+|+||+ +|++|+|.+||+++.++|.|.
T Consensus       296 ~v~~~~~~~gy~~~~~~~~~~~-----~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~  369 (436)
T TIGR01923       296 MVKGANLMKGYLYQGELTPAFE-----QQGWFNTGDIGELDGEGFLYVLGRRDDLIIS-GGENIYPEEIETVLYQHPGIQ  369 (436)
T ss_pred             EEECCccchhhCCChhhhhhhh-----cCCCeeccceEEEcCCCCEEEeccccCeEEe-CCEeeCHHHHHHHHHhCCCee
Confidence            9999999999999888877655     6799999999999999999999999999997 699999999999999999999


Q ss_pred             eEEEEecCCC---CeEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHH
Q 005874          586 NIMMHADPFH---SYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAI  659 (672)
Q Consensus       586 ~~~V~g~~~~---~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l  659 (672)
                      +++|++..+.   ..++++|+++++.......    .++.+.|+.+++|..++++++.|      +|++||++|++|
T Consensus       370 ~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~l~----~~l~~~l~~~~~p~~i~~~~~iP------~t~~GK~~r~~L  436 (436)
T TIGR01923       370 EAVVVPKPDAEWGQVPVAYIVSESDISQAKLI----AYLTEKLAKYKVPIAFEKLDELP------YNASGKILRNQL  436 (436)
T ss_pred             EEEEeCCcchhcCCeeEEEEEECCCCCHHHHH----HHHHHhhhCCCCCeEEEEecCCC------CCCCCceecccC
Confidence            9999998654   3478888877543222222    55678999999999999999887      999999999864

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.3e-56  Score=496.36  Aligned_cols=493  Identities=22%  Similarity=0.257  Sum_probs=368.5

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF  137 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~  137 (672)
                      .++.+++...+...|+.+++...           ++          .+.+||.||+++++++|++|.+.|+++||+|+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~----------~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~   60 (545)
T PRK07768          2 SRFTEKMYANARTSPRGMVTGEP-----------DA----------PVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVL   60 (545)
T ss_pred             chHHHHHHHHhhCCCcceEEecC-----------CC----------ceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            46888888999999999988652           22          2479999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHH-------HHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecC
Q 005874          138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEAL-------CYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDA  210 (672)
Q Consensus       138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~  210 (672)
                      ++|+++|+++++||+++|++++|+++..+.+++       .++++.++++.+++++.....+.....             
T Consensus        61 ~~~~~~~~~~~la~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------------  127 (545)
T PRK07768         61 AGAPVEIAPTAQGLWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEE-------------  127 (545)
T ss_pred             CCCchHHHHHHHHHHHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhcc-------------
Confidence            999999999999999999999999988776544       556777899999998765443322110             


Q ss_pred             CCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCC
Q 005874          211 NIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG  290 (672)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~  290 (672)
                                  ....+++++++.....   .......++++++++|||||||.||||+++|+++.+.+......+ ++.
T Consensus       128 ------------~~~~~~~~~~l~~~~~---~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-~~~  191 (545)
T PRK07768        128 ------------KGIRVLTVADLLAADP---IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAA-EFD  191 (545)
T ss_pred             ------------cCCceeehhhhcccCC---CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhc-CCC
Confidence                        1123445555554222   122345678999999999999999999999999999888777777 777


Q ss_pred             CC-cEEEEecChHhHHHHHH-HHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHh
Q 005874          291 SK-DVYLAYLPLAHVLELVA-ENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKK  368 (672)
Q Consensus       291 ~~-d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~  368 (672)
                      .+ |++++.+|++|.+++.. .+.++..|+++++..+.....+    +..+...++++++|++.++|.++..+...+...
T Consensus       192 ~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~  267 (545)
T PRK07768        192 VETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRD----PLLWAELISKYRGTMTAAPNFAYALLARRLRRQ  267 (545)
T ss_pred             CCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeCHHHHHHh----HHHHHHHHHHhCCEEEECchHHHHHHHHHHhcc
Confidence            76 89999999999999876 5567999999887544332222    111122289999999988888877665433111


Q ss_pred             hhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHH---hC
Q 005874          369 VDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC---LG  445 (672)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~---~~  445 (672)
                      ...                                           .....+++|.+++||+++++++.+.+.+.   ++
T Consensus       268 ~~~-------------------------------------------~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g  304 (545)
T PRK07768        268 AKP-------------------------------------------GAFDLSSLRFALNGAEPIDPADVEDLLDAGARFG  304 (545)
T ss_pred             ccc-------------------------------------------cCCCchheeeEEeccCCCCHHHHHHHHHHHHhcC
Confidence            100                                           00112489999999999999999988874   45


Q ss_pred             C---ceecccCcccccccccccCCC--------------------------CCCCCccCCCcCCeEEEEEecCCCCcccC
Q 005874          446 A---PIGQGYGLTETCAGGTFSEVD--------------------------DSSVGRVGAPLPCSFIKLIDWPEGGYLTS  496 (672)
Q Consensus       446 ~---~v~~~YG~TE~~~~~~~~~~~--------------------------~~~~~~~G~p~~~~~v~i~d~~~~~~~~~  496 (672)
                      .   .+++.||+||++..++.....                          ....+++|.|.++++++|+| ++++.+  
T Consensus       305 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~--  381 (545)
T PRK07768        305 LRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVL--  381 (545)
T ss_pred             CCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCC--
Confidence            5   499999999998655433221                          11235799999999999999 777655  


Q ss_pred             CCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHH
Q 005874          497 DSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEA  576 (672)
Q Consensus       497 ~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~  576 (672)
                       +.++.|||+++|+.++.||++++.... .+.    .+|||+|||+|++++||.++++||.+|+||+ +|++|+|.+||+
T Consensus       382 -~~g~~Gel~v~~~~~~~gy~~~~~~~~-~~~----~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eiE~  454 (545)
T PRK07768        382 -PPRGVGVIELRGESVTPGYLTMDGFIP-AQD----ADGWLDTGDLGYLTEEGEVVVCGRVKDVIIM-AGRNIYPTDIER  454 (545)
T ss_pred             -CCCCEEEEEEccCcccccccCCCCCcc-ccc----CCCeeeccceEEEecCCEEEEEccccceEEE-CCEecCHHHHHH
Confidence             478899999999999999998654433 222    6789999999999999999999999999998 599999999999


Q ss_pred             HHhcCcccceEEEEecC--CC---CeEEEEEEcChhHHHHHHHHcChhhhhcCCCCC--cceeEEEEee--cCCCCCCCc
Q 005874          577 ALIVSPYVDNIMMHADP--FH---SYCVALVVASQPAVEEWAAKQGIVGKNARLDKF--EIPAKIKLLS--YPWTSEAGL  647 (672)
Q Consensus       577 ~l~~~~~V~~~~V~g~~--~~---~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~--~~p~~i~~~~--~~~~~~~~~  647 (672)
                      ++.++|+|.+++|++..  +.   ..+++++.+.......... .....+.+.+..+  ..|..+.+++  ..|      
T Consensus       455 ~l~~~~~v~~~~vv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP------  527 (545)
T PRK07768        455 AAARVEGVRPGNAVAVRLDAGHSREGFAVAVESNAFEDPAEVR-RIRHQVAHEVVAEVGVRPRNVVVLGPGSIP------  527 (545)
T ss_pred             HHHhCcccccceEEEEEecCCCCceEEEEEEEecccccHHHHH-HHHHHHHHHHHHHhCCCccEEEEeCCCcCC------
Confidence            99999999998777642  11   2344444443322111101 1113333444433  5788888887  444      


Q ss_pred             cccccccChHHHHHHHH
Q 005874          648 VTAALKIKREAIRKAFA  664 (672)
Q Consensus       648 ~t~~gKi~R~~l~~~~~  664 (672)
                      +|++||++|++++++|.
T Consensus       528 ~t~~GKi~r~~l~~~~~  544 (545)
T PRK07768        528 KTPSGKLRRANAAELVT  544 (545)
T ss_pred             CCCchhHHHHHHHHhcC
Confidence            99999999999999875

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.5e-54  Score=463.98  Aligned_cols=394  Identities=16%  Similarity=0.147  Sum_probs=330.1

Q ss_pred             EeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEEC
Q 005874          106 WLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICG  185 (672)
Q Consensus       106 ~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~  185 (672)
                      .+||+||.++++++|..|. +|+++|++|+++++|+++++++++||+++|++++|+++..+.+.+..++++++++.++++
T Consensus         8 ~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~   86 (414)
T PRK08308          8 EYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLYG   86 (414)
T ss_pred             eecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEec
Confidence            7999999999999999985 689999999999999999999999999999999999999999999999999999999997


Q ss_pred             ccchHHHHhhhcCCCCccEEEEecCCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCC
Q 005874          186 SKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLP  265 (672)
Q Consensus       186 ~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~P  265 (672)
                      +....                .               .                   ......++++++++|||||||.|
T Consensus        87 ~~~~~----------------~---------------~-------------------~~~~~~~~~~~~i~~TSGtTG~P  116 (414)
T PRK08308         87 ESDFT----------------K---------------L-------------------EAVNYLAEEPSLLQYSSGTTGEP  116 (414)
T ss_pred             Ccccc----------------c---------------c-------------------cCCCCCCCCceEEEECCCCCCCC
Confidence            63110                0               0                   00123457899999999999999


Q ss_pred             ceEEeehHHHHHHHHHHHhhcCCCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEee---CCcccccCchhhhhccccc
Q 005874          266 KGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQG  341 (672)
Q Consensus       266 KgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~  341 (672)
                      |||++||+++.+.+..+...+ .+..+|+++..+|++|.+++.. .+.++..|+++++   .++..+.+.          
T Consensus       117 Kgv~~s~~~l~~~~~~~~~~~-~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~----------  185 (414)
T PRK08308        117 KLIRRSWTEIDREIEAYNEAL-NCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNI----------  185 (414)
T ss_pred             cEEEEehHhHHHHHHHHHHhh-CCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHH----------
Confidence            999999999999888887777 7889999999999999999865 6778999999988   344444444          


Q ss_pred             ccccccceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCc
Q 005874          342 DASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGR  421 (672)
Q Consensus       342 ~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  421 (672)
                       ++++++|+++++|.++..+.+....                                                   ..+
T Consensus       186 -l~~~~~t~~~~~P~~~~~l~~~~~~---------------------------------------------------~~~  213 (414)
T PRK08308        186 -LRNTPQHILYAVPLMLHILGRLLPG---------------------------------------------------TFQ  213 (414)
T ss_pred             -HHHhCCeEEEcCHHHHHHHHhcCCc---------------------------------------------------ccc
Confidence             9999999999999999888652110                                                   016


Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHhCCceecccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCC
Q 005874          422 IRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMP  501 (672)
Q Consensus       422 lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~  501 (672)
                      ++.+++||+++++++.+.+++. +.++++.||+||++.+..  .......+++|.|+|++++++.+ +         .+.
T Consensus       214 l~~~~~~G~~l~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~--~~~~~~~~~~G~p~~~~~~~~~~-~---------~~~  280 (414)
T PRK08308        214 FHAVMTSGTPLPEAWFYKLRER-TTYMMQQYGCSEAGCVSI--CPDMKSHLDLGNPLPHVSVSAGS-D---------ENA  280 (414)
T ss_pred             ccEEEEccCCCCHHHHHHHHHh-CChhhhccCccccCCeee--cCCCCCCCccCccCCCeEEEEec-C---------CCC
Confidence            7889999999999999999886 678999999999975433  22223457899999999999876 1         345


Q ss_pred             ccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcC
Q 005874          502 RGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVS  581 (672)
Q Consensus       502 ~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~  581 (672)
                      .|||++++                       .++||+|||+|++++||.++++||.||+||+ +|++|+|.+||+++.++
T Consensus       281 ~gel~v~~-----------------------~~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~  336 (414)
T PRK08308        281 PEEIVVKM-----------------------GDKEIFTKDLGYKSERGTLHFMGRMDDVINV-SGLNVYPIEVEDVMLRL  336 (414)
T ss_pred             CceEEEEc-----------------------CCceEECCceEEECCCccEEEecccCCeEEE-CCEEECHHHHHHHHHhC
Confidence            79999974                       3579999999999999999999999999997 59999999999999999


Q ss_pred             cccceEEEEecCCC---CeEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHH
Q 005874          582 PYVDNIMMHADPFH---SYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREA  658 (672)
Q Consensus       582 ~~V~~~~V~g~~~~---~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~  658 (672)
                      |+|.+++|++..++   +.++++++.......+...    .+++++|+.|++|..+++++..|      +|++||++|+.
T Consensus       337 ~~v~~a~v~~~~~~~~~~~~~~~v~~~~~~~~~~l~----~~l~~~l~~~~~P~~i~~v~~iP------~t~~GKi~r~~  406 (414)
T PRK08308        337 PGVQEAVVYRGKDPVAGERVKAKVISHEEIDPVQLR----EWCIQHLAPYQVPHEIESVTEIP------KNANGKVSRKL  406 (414)
T ss_pred             CCeeEEEEEeccCCCCCceEEEEEEeCCCCCHHHHH----HHHHHhCccccCCcEEEEeccCC------CCCCcCeehhh
Confidence            99999999997655   3577888766432222222    56678999999999999999887      99999999995


Q ss_pred             HH
Q 005874          659 IR  660 (672)
Q Consensus       659 l~  660 (672)
                      |+
T Consensus       407 ~~  408 (414)
T PRK08308        407 LE  408 (414)
T ss_pred             hh
Confidence            43

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=4.3e-55  Score=471.26  Aligned_cols=406  Identities=33%  Similarity=0.499  Sum_probs=316.5

Q ss_pred             HHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH
Q 005874           64 FEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAE  143 (672)
Q Consensus        64 ~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e  143 (672)
                      |+++|+++||++|+.+ +          ++           +++||+|+.++++++|..|.+.|+++|++|+++++|+++
T Consensus         1 f~~~a~~~pd~~a~~~-~----------~~-----------~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~   58 (417)
T PF00501_consen    1 FERQAQRYPDRIALID-D----------EG-----------RSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIE   58 (417)
T ss_dssp             HHHHHHHSTTSEEEEE-T----------TT-----------EEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHH
T ss_pred             ChhHHhhCCCceEEEE-C----------CC-----------EEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccce
Confidence            6899999999999986 1          22           489999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEE----CccchHHHHhhhcCCCCccEEEEecCCCccccccc
Q 005874          144 WFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVIC----GSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSV  219 (672)
Q Consensus       144 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~----~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~  219 (672)
                      ++++++||+++|++++|++|.++.+++.+++++++++++|+    +......+............++.++........  
T Consensus        59 ~~~~~~A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  136 (417)
T PF00501_consen   59 FVVAFLACLRAGAIPVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDLPKKE--  136 (417)
T ss_dssp             HHHHHHHHHHTT-EEEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSCTTCH--
T ss_pred             eeeeecccccccccccccccccccccccccccccceeEEEEeccccccccccchhhhccccccccccccccccccccc--
Confidence            99999999999999999999999999999999999999997    222233344444444445555565533221100  


Q ss_pred             ccCCCeEEEeHHHHHhcccCCCCCCCC-CCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHH--hhcCCCCCCcEEE
Q 005874          220 EQSGRWKITSFADVQILGRENPVDADY-PVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVM--TIVPDLGSKDVYL  296 (672)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~--~~~~~~~~~d~~l  296 (672)
                                  .+.......... .. ..++++++++|||||||.||+|.+||+++++.+..+.  ..+ +++  |+++
T Consensus       137 ------------~~~~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~-~~~--d~~l  200 (417)
T PF00501_consen  137 ------------ALKSASLSDEPQ-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYF-GLG--DRIL  200 (417)
T ss_dssp             ------------HHHHHHHCHCSH-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTT-TTT--TEEE
T ss_pred             ------------cccccccccccc-cCCCCccceeEeecccccccccccccccccccccccccccccccc-ccC--ceEE
Confidence                        000000000000 00 0568999999999999999999999999999988865  222 334  6999


Q ss_pred             EecChHhHHHH-HHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCch
Q 005874          297 AYLPLAHVLEL-VAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGL  375 (672)
Q Consensus       297 ~~~pl~h~~~~-~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~  375 (672)
                      +++|++|.+++ ...+.+++.|+++++.+.....+     ...+...+++++||+++++|.+++.+++..... ...   
T Consensus       201 ~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~-----~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~~~---  271 (417)
T PF00501_consen  201 SFLPLSHIFGLISALLAALFSGATLVLPSPFDLFD-----PESLLELISRYKPTILFAVPSMLEALLQSPEEK-TKI---  271 (417)
T ss_dssp             ESS-TTSHHHHHHHHHHHHHCTSEEEEESSHHHHH-----HHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-HHG---
T ss_pred             eeccccccccccccccccccccccccccccccccc-----cccchhccccccccccccccccccccccccccc-ccc---
Confidence            99999999999 66889999999999955443311     011122299999999999999999997732211 000   


Q ss_pred             hHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCC-ceecccCc
Q 005874          376 SKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGA-PIGQGYGL  454 (672)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~v~~~YG~  454 (672)
                                                             .....+++|.+++||+++++++.+.+++.++. ++++.||+
T Consensus       272 ---------------------------------------~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~  312 (417)
T PF00501_consen  272 ---------------------------------------SKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGS  312 (417)
T ss_dssp             ---------------------------------------TTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEE
T ss_pred             ---------------------------------------cccccccccccccccccCChhhccccccccccccceecccc
Confidence                                                   00012369999999999999999999999987 99999999


Q ss_pred             ccccccccccC--CCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCC
Q 005874          455 TETCAGGTFSE--VDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDK  532 (672)
Q Consensus       455 TE~~~~~~~~~--~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~  532 (672)
                      ||++.+++...  ......+++|.|+|+++++|+|.++++.+   ++|+.|||+|+||.++.||+++|+.+.+.|.    
T Consensus       313 tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~---~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~----  385 (417)
T PF00501_consen  313 TETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPL---PPGEPGEIVIRGPNVFSGYYNDPELTAEAFI----  385 (417)
T ss_dssp             GGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBE---STTSEEEEEEESTTSBSEETTBHHHHHHHEE----
T ss_pred             cccceeeecccccccccccccccccccccccccccccccccc---cccccccccccCCccceeeeccccccccccc----
Confidence            99998887553  22346688999999999999994446666   4788999999999999999999999999997    


Q ss_pred             CCceEecCcEEEEccCceEEEEecCCCeEecC
Q 005874          533 GMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQ  564 (672)
Q Consensus       533 ~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~  564 (672)
                      .+|||+|||+|++|+||.|+++||.||+||++
T Consensus       386 ~~~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~  417 (417)
T PF00501_consen  386 DDGWYRTGDLGRLDEDGYLYILGRSDDMIKVR  417 (417)
T ss_dssp             TTSEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred             cccceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence            56899999999999999999999999999974

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=1.4e-54  Score=437.50  Aligned_cols=504  Identities=21%  Similarity=0.236  Sum_probs=396.5

Q ss_pred             CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874           55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV  134 (672)
Q Consensus        55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V  134 (672)
                      ....|++++|..+++++|+++|+++.+                     ..+.+||+|+.+.++++|++|+..|++.||.|
T Consensus        74 r~~~ti~~~F~~~vrr~p~k~aii~~~---------------------~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~V  132 (649)
T KOG1179|consen   74 RERRTIAELFLSQVRRQPDKPAIIYEG---------------------PFQSLTFAELDARSNRVANYLHAEGLKAGDVV  132 (649)
T ss_pred             ccCCcHHHHHHHHHHhCCCccEEEEeC---------------------CCceeeHHHHHHHHHHHHHHHHHhhcccCCEE
Confidence            345899999999999999999999853                     12379999999999999999999999999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCc-cEEEEecCCCc
Q 005874          135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTV-KHVICMDANIP  213 (672)
Q Consensus       135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l-~~ii~~~~~~~  213 (672)
                      +++|+|++|++.++|+++++|++...||.++..+.|.|.++.++++++|++.+..+.+.+..+.+... -.+...+....
T Consensus       133 AL~men~pefv~lWlGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~  212 (649)
T KOG1179|consen  133 ALLMENRPEFVALWLGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSV  212 (649)
T ss_pred             EEecCCChhHHHHHHhHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCC
Confidence            99999999999999999999999999999999999999999999999999999988887774333211 11222211110


Q ss_pred             ccccccccCCCeEEEeHHHHHhcccCCCCC---CCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCC
Q 005874          214 SAVSSVEQSGRWKITSFADVQILGRENPVD---ADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG  290 (672)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~  290 (672)
                      .          ....++....+.....+.+   ....+-.++++.+|||||||.||..++||.-.......+...+ +++
T Consensus       213 ~----------~g~~~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~-g~~  281 (649)
T KOG1179|consen  213 P----------DGIESLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVF-GMT  281 (649)
T ss_pred             C----------chHHHHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-CCC
Confidence            0          0111222222333333322   2344566899999999999999999999999999888788888 999


Q ss_pred             CCcEEEEecChHhHHHHHH-HHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHH
Q 005874          291 SKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVR  366 (672)
Q Consensus       291 ~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~  366 (672)
                      ++|+++..+|++|..+.+. +..++..|+|+++   ++...++++           ..+|++|++.-.-.+.+.|++...
T Consensus       282 ~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~D-----------C~k~~~Tv~QYIGElcRYLl~~p~  350 (649)
T KOG1179|consen  282 ADDVVYTTLPLYHSAAGILGIGGCLLHGATVVLRKKFSASNFWDD-----------CRKYNVTVIQYIGELCRYLLNQPP  350 (649)
T ss_pred             ccceEEEcchhHHHHHHHHHHHHHHhcCceEEEecccchhhhHHH-----------HHHhCCeeeehHHHHHHHHHcCCC
Confidence            9999999999999998777 7889999999999   999999998           999999999999999999988544


Q ss_pred             HhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCC
Q 005874          367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGA  446 (672)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~  446 (672)
                      ...+..                                               .++|..+  |..+.+++++.|...||.
T Consensus       351 ~~~er~-----------------------------------------------HkVRla~--GNGLR~diW~~Fv~RFg~  381 (649)
T KOG1179|consen  351 SPEERQ-----------------------------------------------HKVRLAY--GNGLRPDIWQQFVKRFGI  381 (649)
T ss_pred             ChhhcC-----------------------------------------------ceEEEEe--cCCCCchHHHHHHHHcCC
Confidence            433322                                               2677776  888999999999999987


Q ss_pred             c-eecccCcccccccccccCCCCCCCCccCCCcC---C-eEEEE--EecC-------CCCcccCCCCCCccEEEE--ccC
Q 005874          447 P-IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLP---C-SFIKL--IDWP-------EGGYLTSDSPMPRGEIVI--AGP  510 (672)
Q Consensus       447 ~-v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~---~-~~v~i--~d~~-------~~~~~~~~~~g~~GEi~v--~g~  510 (672)
                      + +.+.||+||+... +++.  +.+.|.+|+..-   . ..+.+  +|+.       +.+.+..|++|+.|.+.-  .-.
T Consensus       382 ~~IgE~YgaTEgn~~-~~N~--d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k  458 (649)
T KOG1179|consen  382 IKIGEFYGATEGNSN-LVNY--DGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQK  458 (649)
T ss_pred             CeEEEEeccccCcce-eeee--cCccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccC
Confidence            7 8999999997543 2222  444455554311   0 12222  2322       344555688999997632  233


Q ss_pred             cc---cccccCCchhhhhhcccC--CCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccc
Q 005874          511 NV---TVGYFKNEEKTKEVYKVD--DKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVD  585 (672)
Q Consensus       511 ~v---~~gY~~~~~~t~~~~~~~--~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~  585 (672)
                      .-   |.||.++.+.|++...++  ..+|-||.|||+-.+|+.|.||+.||..|+|..+ ||+|+..|||.+|..+.+++
T Consensus       459 ~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWK-GENVsTtEVe~~l~~~~~~~  537 (649)
T KOG1179|consen  459 NPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWK-GENVSTTEVEDVLSALDFLQ  537 (649)
T ss_pred             CchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeec-CCcccHHHHHHHHhhhcccc
Confidence            33   899999888777655444  4588899999999999999999999999999997 99999999999999999999


Q ss_pred             eEEEEecCCCC----eEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHH
Q 005874          586 NIMMHADPFHS----YCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRK  661 (672)
Q Consensus       586 ~~~V~g~~~~~----~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~  661 (672)
                      |+.|+|..-+.    .-.|.|+.++....+..+.-  ..++..||+|.+|..+.+.++..      +|.+.|.++..|++
T Consensus       538 dv~VYGV~VP~~EGRaGMAaI~~~p~~~~d~~~l~--~~l~~~LP~YA~P~FlRl~~~i~------~TgTFKl~K~~L~~  609 (649)
T KOG1179|consen  538 DVNVYGVTVPGYEGRAGMAAIVLDPTTEKDLEKLY--QHLRENLPSYARPRFLRLQDEIE------KTGTFKLQKTELQK  609 (649)
T ss_pred             ceeEEEEecCCccCccceEEEEecCcccchHHHHH--HHHHhhCccccchHHHHHHhhhh------cccchhhHHHHHHH
Confidence            99999975443    25566665665544433322  66789999999999999999987      99999999999987


Q ss_pred             H
Q 005874          662 A  662 (672)
Q Consensus       662 ~  662 (672)
                      .
T Consensus       610 e  610 (649)
T KOG1179|consen  610 E  610 (649)
T ss_pred             c
Confidence            5

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=2.5e-51  Score=440.73  Aligned_cols=397  Identities=25%  Similarity=0.282  Sum_probs=322.4

Q ss_pred             eHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECc
Q 005874          108 TYGQAFETICNFASGLAQ-LGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGS  186 (672)
Q Consensus       108 Ty~el~~~a~~la~~L~~-~g~~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~  186 (672)
                      ||.|+.+.++++|+.|.+ .|+++||+|+++++|+++++++++||++.|++++|+++.++.+.+.++++.++++.++++.
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            799999999999999998 8999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cchHHHHhhhcCCCCccEEEEecCCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCc
Q 005874          187 KELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPK  266 (672)
Q Consensus       187 ~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK  266 (672)
                      +....+.....      .++.....                  +...................+++++++|||||||.||
T Consensus        81 ~~~~~~~~~~~------~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK  136 (408)
T TIGR01733        81 ALASRLAGLVL------PIILVDPL------------------ELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPK  136 (408)
T ss_pred             chhhhccccCC------ceEEechh------------------hhhhcccccccccccCCCCCCCcEEEEEcCCCCCCCC
Confidence            76654433211      11111110                  0000000000011111245789999999999999999


Q ss_pred             eEEeehHHHHHHHHHHHhhcCCCCCCcEEEEecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccc
Q 005874          267 GVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVL  346 (672)
Q Consensus       267 gV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~  346 (672)
                      +|.+||+++++.+..+...+ .++++|++++.+|++|.+++...+.++..|+++++.+..... .    ...+...++++
T Consensus       137 ~v~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~-~----~~~~~~~~~~~  210 (408)
T TIGR01733       137 GVVVTHRSLVNLLAWLARRY-GLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEER-D----AALLAALIAEH  210 (408)
T ss_pred             EEEeccHHHHHHHHHHHHhc-CCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhcc-C----HHHHHHHHHHc
Confidence            99999999999999888877 888999999999999999998899999999999984333221 1    11122227888


Q ss_pred             cceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEE
Q 005874          347 RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFIL  426 (672)
Q Consensus       347 k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~  426 (672)
                      ++|.+.++|.+++.+.+...                                                  ...+++|.++
T Consensus       211 ~~t~l~~~p~~~~~l~~~~~--------------------------------------------------~~~~~l~~v~  240 (408)
T TIGR01733       211 PVTVLNLTPSLLALLAAALP--------------------------------------------------PALASLRLVI  240 (408)
T ss_pred             CceEEEeCHHHHHHHHHhhh--------------------------------------------------hcccCceEEE
Confidence            99999999999999877432                                                  1113899999


Q ss_pred             EcCCCCCHHHHHHHHHHhC-CceecccCcccccccccccCCCCC-----CCCccCCCcCCeEEEEEecCCCCcccCCCCC
Q 005874          427 SGGAPLSADTQRFINICLG-APIGQGYGLTETCAGGTFSEVDDS-----SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPM  500 (672)
Q Consensus       427 ~gG~~l~~~~~~~~~~~~~-~~v~~~YG~TE~~~~~~~~~~~~~-----~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g  500 (672)
                      +||+++++++.+.+++.++ +.+++.||+||+++.++.......     ...++|.|.++++++|+| +++..+   +.|
T Consensus       241 ~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~---~~g  316 (408)
T TIGR01733       241 LGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLD-DDLRPV---PVG  316 (408)
T ss_pred             EeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEEC-CCCCCC---CCC
Confidence            9999999999999999987 899999999999877653322221     156799999999999999 555544   578


Q ss_pred             CccEEEEccCcccccccCCchhhhhhcccCC--CCCc--eEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHH
Q 005874          501 PRGEIVIAGPNVTVGYFKNEEKTKEVYKVDD--KGMR--WFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEA  576 (672)
Q Consensus       501 ~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~--~~~g--w~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~  576 (672)
                      +.|||+++|++++.||+++++.+.+.|...+  ..+|  ||+|||+|++|++|.+++.||.+|+++. +|++|+|.+||+
T Consensus       317 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~-~G~~v~~~~ie~  395 (408)
T TIGR01733       317 VVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI-RGYRIELGEIEA  395 (408)
T ss_pred             CceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEe-CeEEechHHHHH
Confidence            8999999999999999999999998886432  1223  9999999999999999999999999997 699999999999


Q ss_pred             HHhcCcccceEEE
Q 005874          577 ALIVSPYVDNIMM  589 (672)
Q Consensus       577 ~l~~~~~V~~~~V  589 (672)
                      ++..++.|.+|+|
T Consensus       396 ~l~~~~~v~~~~v  408 (408)
T TIGR01733       396 ALLRHPGVREAVV  408 (408)
T ss_pred             HHhcCcchhhhcC
Confidence            9999999999875

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.2e-44  Score=381.31  Aligned_cols=316  Identities=27%  Similarity=0.361  Sum_probs=254.5

Q ss_pred             CCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEEEecChHhHHHHHHHHHHhHhCcEEee---
Q 005874          246 YPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY---  322 (672)
Q Consensus       246 ~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~---  322 (672)
                      .+.++++++++|||||||.||||+++|+++.+.+......+   ...++++..+|++|..++...+.++..|+++++   
T Consensus        31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~  107 (358)
T PRK07824         31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL---GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDV  107 (358)
T ss_pred             CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc---CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCc
Confidence            45578999999999999999999999999998877655433   456789999999999999888888889988876   


Q ss_pred             ---CCcccccCchhhhhccccccccccc--ceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcC
Q 005874          323 ---GTPLTLTDTSSKIKKGTQGDASVLR--PTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFG  397 (672)
Q Consensus       323 ---~~~~~l~~~~~~~~~~~~~~i~~~k--~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (672)
                         +++..+.+.           +++++  .++...+|..+..+......                              
T Consensus       108 ~~~~~~~~~~~~-----------i~~~~~~~~~~~~~p~~l~~~~~~~~~------------------------------  146 (358)
T PRK07824        108 SAGFDPTALPRA-----------VAELGGGRRYTSLVPMQLAKALDDPAA------------------------------  146 (358)
T ss_pred             CCCcCHHHHHHH-----------HHHhCCCceEEEecHHHHHHHHhCccc------------------------------
Confidence               233333333           77777  45666678777655431100                              


Q ss_pred             CCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCcccccccccccCCCCCCCCccCCC
Q 005874          398 AWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAP  477 (672)
Q Consensus       398 ~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p  477 (672)
                                        ....+++|.+++||+++++++.+.+.+ +++++++.||+||++..+.          ..|.|
T Consensus       147 ------------------~~~~~~l~~i~~gG~~l~~~~~~~~~~-~~~~v~~~YG~TE~~~~~~----------~~G~~  197 (358)
T PRK07824        147 ------------------TAALAELDAVLVGGGPAPAPVLDAAAA-AGINVVRTYGMSETSGGCV----------YDGVP  197 (358)
T ss_pred             ------------------cCCcccceEEEECCCCCCHHHHHHHHh-cCCcEEecccCCccCCCcC----------cCcee
Confidence                              001138999999999999999998886 4999999999999875432          35899


Q ss_pred             cCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecC
Q 005874          478 LPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRK  557 (672)
Q Consensus       478 ~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~  557 (672)
                      ++++++++.|               |||+++|+.++.||+++++.+  .|.    .+|||+|||+|++ ++|.+++.||.
T Consensus       198 ~~g~~v~i~~---------------Gei~v~g~~~~~gY~~~~~~~--~~~----~~g~~~TGDl~~~-~~g~l~i~GR~  255 (358)
T PRK07824        198 LDGVRVRVED---------------GRIALGGPTLAKGYRNPVDPD--PFA----EPGWFRTDDLGAL-DDGVLTVLGRA  255 (358)
T ss_pred             CCCCEEEecC---------------CEEEEecCccccccCCCcccc--ccc----CCCceecccEEEE-eCCEEEEEecc
Confidence            9999999854               999999999999999988743  343    5689999999999 79999999999


Q ss_pred             CCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEE
Q 005874          558 KDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKI  634 (672)
Q Consensus       558 ~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i  634 (672)
                      ||+||+ +|++|+|.+||+++.+||+|.+|+|++.+++   +.++++++.+.........  ....+++.|+.+++|..|
T Consensus       256 ~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~--i~~~~~~~l~~~~~P~~i  332 (358)
T PRK07824        256 DDAIST-GGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAPTLEA--LRAHVARTLDRTAAPREL  332 (358)
T ss_pred             CCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCCcCHHH--HHHHHHhhCccccCCCEE
Confidence            999997 6999999999999999999999999997654   4588888766532211111  115667899999999999


Q ss_pred             EEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874          635 KLLSYPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       635 ~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                      +++++.|      +|++||++|++|+++|.+
T Consensus       333 ~~v~~lP------~t~~GKi~r~~L~~~~~~  357 (358)
T PRK07824        333 HVVDELP------RRGIGKVDRRALVRRFAG  357 (358)
T ss_pred             EEecCCC------CCCCccccHHHHHHHhhc
Confidence            9999887      999999999999999875

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.9e-39  Score=368.64  Aligned_cols=415  Identities=25%  Similarity=0.285  Sum_probs=331.4

Q ss_pred             CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874           55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV  134 (672)
Q Consensus        55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V  134 (672)
                      +...+++++|.+.+...|++.|+..            .+.           .+||+++..+++++|+.|.+.|+.+++.|
T Consensus       224 ~~~~~i~~~f~~~a~~~p~~~a~~~------------~~~-----------~lty~el~~~a~~la~~l~~~g~~~~~~V  280 (642)
T COG1020         224 PLRLTIHLLFEEQAATTPDAVALVR------------GGQ-----------QLTYAELDARANRLARLLISLGVGPGETV  280 (642)
T ss_pred             CccchHHHHHHHHHHhCCCceeEec------------CCC-----------cccHHHHHHHHHHHHHHHHHcCCCCCCeE
Confidence            3457899999999999999988875            223           69999999999999999999999999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcc
Q 005874          135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS  214 (672)
Q Consensus       135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~  214 (672)
                      +++.+++.+++++++|++++|..++|+++.++.+++.++++.++++.+++.........    ..+.    +..+...  
T Consensus       281 ~i~~~rs~~~i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~--  350 (642)
T COG1020         281 AILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDV----GLPG----LALDDAL--  350 (642)
T ss_pred             EEEcCCCHHHHHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccc----cCCc----ccccccc--
Confidence            99999999999999999999999999999999999999999999999999833221100    1110    1100000  


Q ss_pred             cccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcE
Q 005874          215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV  294 (672)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~  294 (672)
                                         .......+. .....+++.++++|||||||.||||+.+|+++.+.+......+ .++..|+
T Consensus       351 -------------------~~~~~~~~~-~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~-~~~~~d~  409 (642)
T COG1020         351 -------------------SEIPDTDPI-PQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARF-GLDADDR  409 (642)
T ss_pred             -------------------ccCCccCcc-cccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhc-CCCcccE
Confidence                               000000010 2234568999999999999999999999999999888877777 8999999


Q ss_pred             EEEecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCc
Q 005874          295 YLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGG  374 (672)
Q Consensus       295 ~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~  374 (672)
                      ++...++.+..+....+.++..|+++++.......+...     +...+.++++|++..+|.++..+.......... + 
T Consensus       410 ~l~~~s~~fD~~~~~~f~~l~~G~~l~~~~~~~~~~~~~-----l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~-~-  482 (642)
T COG1020         410 VLALASLSFDASVFEIFGALLEGARLVLAPALLQVDPAA-----LLELLEAQGITVLLLVPLLLRLLLLAALAPDLI-S-  482 (642)
T ss_pred             EeecCCcccchhHHHHHHHHhCCCEEEecCccccCCHHH-----HHHHHHHcCCEEEEecHHHHHHHHhchhhcccc-C-
Confidence            999999999999999999999999999954443333211     122278899999999999998887641110000 0 


Q ss_pred             hhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh--CCceeccc
Q 005874          375 LSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL--GAPIGQGY  452 (672)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~--~~~v~~~Y  452 (672)
                                                                 ..+.+|.+++||+.++..+...+....  ...+.+.|
T Consensus       483 -------------------------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~y  519 (642)
T COG1020         483 -------------------------------------------PCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLY  519 (642)
T ss_pred             -------------------------------------------CcccccEEEEcCCCCCHHHHHHHHHhccccceEeecc
Confidence                                                       002489999999999999988777655  46899999


Q ss_pred             CcccccccccccCCCCCC--CCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccC
Q 005874          453 GLTETCAGGTFSEVDDSS--VGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVD  530 (672)
Q Consensus       453 G~TE~~~~~~~~~~~~~~--~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~  530 (672)
                      |+||++...+........  ...+|.|++++.++|.| .....   ++.|..||+++.|.++++||+++|+.|.+.|..+
T Consensus       520 gpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild-~~~~~---~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~  595 (642)
T COG1020         520 GPTEATLDAPSFPISAELESRVPIGRPVANTQLYILD-QGLRP---LPLGVPGELYIAGLGLALGYLNRPDLTAERFIAL  595 (642)
T ss_pred             CccHHhhheeeEEcccccCCCCCcceeeCCCeEEEEC-CCCCc---CCCCCCeeeEECCcchhhhhcCChhhhHHHhhhc
Confidence            999977665544433333  35899999999999999 44444   4578889999999999999999999999999733


Q ss_pred             CCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCc
Q 005874          531 DKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSP  582 (672)
Q Consensus       531 ~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~  582 (672)
                          ++|+|||++++++||.+.++||.|+++|++ |++|.+.+||..+.++|
T Consensus       596 ----~~y~tgD~~r~~~dg~~e~lgr~D~qvki~-g~Riel~eie~~l~~~~  642 (642)
T COG1020         596 ----RLYRTGDLARPLADGALEYLGRKDSQVKIR-GFRIELGEIEAALAEQP  642 (642)
T ss_pred             ----cCccCCCeeeECCCCeEEEeccccceeEec-eEecCcHHHHHHHhcCC
Confidence                599999999999999999999999999985 99999999999998775

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=100.00  E-value=1.1e-36  Score=318.92  Aligned_cols=285  Identities=23%  Similarity=0.172  Sum_probs=217.0

Q ss_pred             CCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCC--CCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeC---
Q 005874          250 ADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG--SKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG---  323 (672)
Q Consensus       250 d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~--~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~---  323 (672)
                      +..++++|||||||.||||++||+++++.+..+...+ ++.  +.|++++.+|++|++++.. .+.++..|+++++.   
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~  173 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL-GERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAA  173 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh-CcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCC
Confidence            4568999999999999999999999999888777766 554  3468999999999999765 67788999999883   


Q ss_pred             CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhh
Q 005874          324 TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEK  403 (672)
Q Consensus       324 ~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (672)
                      ++..+++.           ++.  .|+++++|.+++.+.+..    .                                 
T Consensus       174 ~~~~~l~~-----------i~~--~t~~~~~P~~l~~l~~~~----~---------------------------------  203 (386)
T TIGR02372       174 PASGIMRH-----------ARP--GDLIVGTPFIWEQLADLD----Y---------------------------------  203 (386)
T ss_pred             ChHHHHHh-----------hcc--CCEEEECcHHHHHHHhhC----c---------------------------------
Confidence            33333332           433  289999999998886520    0                                 


Q ss_pred             HHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCC-ceecccCcccccccccccCCCCCCCCccCCCcCCeE
Q 005874          404 LLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGA-PIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSF  482 (672)
Q Consensus       404 ~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~  482 (672)
                                    ..++++. ++||+++++++.+.+++. +. .+++.||+||+++++....     .+..|.|.|+.+
T Consensus       204 --------------~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~-----~~~~~~~~p~~~  262 (386)
T TIGR02372       204 --------------RLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREA-----PDDPFRLLPDLA  262 (386)
T ss_pred             --------------CCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccC-----CCCCcccCCCcc
Confidence                          0125665 678999999999999875 54 6999999999987554321     234567777766


Q ss_pred             EEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEe
Q 005874          483 IKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVK  562 (672)
Q Consensus       483 v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik  562 (672)
                      +++ +  ++.           +   .|                       ...|++|||+|++|++|.|+++||+||+||
T Consensus       263 ~~~-~--~~~-----------~---~g-----------------------~~~~~~tgD~g~~d~~G~l~i~GR~dd~Ik  302 (386)
T TIGR02372       263 CFA-D--TLS-----------S---AG-----------------------LARRLDLQDRLAWDKDGGFTILGRKDEILQ  302 (386)
T ss_pred             ccC-C--Ccc-----------C---CC-----------------------ccceeecCceEEEcCCCcEEEecccCCEEE
Confidence            543 1  110           0   01                       123789999999999999999999999999


Q ss_pred             cCCceeeccHHHHHHHhcCcccceEEEEecCCCCeEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCC
Q 005874          563 LQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHSYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWT  642 (672)
Q Consensus       563 ~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~  642 (672)
                      + +|++|+|.+||+++.+||+|.+|+|...  ...++|+|+++++...+...+.....+.++|+.|++|..+.++++.| 
T Consensus       303 ~-~G~~V~p~eIE~~l~~~p~V~~~~v~~~--g~~~~a~vv~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~~~lP-  378 (386)
T TIGR02372       303 V-GGVNVSPGHVRDILERNPRVRAAAVRLD--GRRLKAFIVVAEDADEAELEIELRATAARHLPAPARPDRFRFGTELP-  378 (386)
T ss_pred             E-CCEEEcHHHHHHHHHcCCCceEEEEEcC--CceEEEEEEECCCCChHHHHHHHHHHHHHhCCCCCCCcEEEEcccCC-
Confidence            7 6999999999999999999999999753  45789999987643222111112255678999999999999999998 


Q ss_pred             CCCCccccccccC
Q 005874          643 SEAGLVTAALKIK  655 (672)
Q Consensus       643 ~~~~~~t~~gKi~  655 (672)
                           +|++||++
T Consensus       379 -----~t~~GKi~  386 (386)
T TIGR02372       379 -----RTGAGKLA  386 (386)
T ss_pred             -----CCCCCCcC
Confidence                 99999985

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=100.00  E-value=1.7e-31  Score=286.41  Aligned_cols=551  Identities=15%  Similarity=0.135  Sum_probs=358.7

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQL-GHKKEERVAI  136 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~-g~~~g~~V~i  136 (672)
                      .+|.|++++++.++||.+|+...           +++      ......+||.++..++.+++.+|..+ -+++||+|++
T Consensus       770 ~~ile~Lq~R~a~tp~~~a~~~~-----------n~~------~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~L  832 (1363)
T KOG3628|consen  770 LTILEILQWRAAKTPDHIAFTTL-----------NAR------GATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVL  832 (1363)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEe-----------ccC------CcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEE
Confidence            68999999999999999999875           444      33567899999999999999999987 7899999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCcEEEecCCCC------CHHHHHHHHhcccceEEEECccchHHHHhhhcCC----CCccEEE
Q 005874          137 FADTRAEWFVALQGCFRRNVTVVTIYASL------GEEALCYSLNETEVTTVICGSKELKKLVDLSGQL----DTVKHVI  206 (672)
Q Consensus       137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~------~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~----~~l~~ii  206 (672)
                      ++++++|++++++||+.+|.+++|+.|-.      ..+.+..+++.+++..|+++......|+..-...    .....++
T Consensus       833 my~~sie~vaa~~~Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~  912 (1363)
T KOG3628|consen  833 MYPPSIEFVAAIYACLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLIL  912 (1363)
T ss_pred             EcCChHHHHHHHHHHHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhh
Confidence            99999999999999999999999998743      3357889999999999999988766554421100    0111111


Q ss_pred             EecCCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhc
Q 005874          207 CMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV  286 (672)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~  286 (672)
                      ...+.......           ....+  .....+.++....++.+|++.|.--++|.--|+.++|..+++.++...+.+
T Consensus       913 ~~~~~~~t~~k-----------~~~~~--~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~  979 (1363)
T KOG3628|consen  913 VLPKLPETIRK-----------RKKNI--KKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETC  979 (1363)
T ss_pred             cccccchhhhh-----------hhhhh--hccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHH
Confidence            11111100000           00000  011122233445678999999999999999999999999999999999998


Q ss_pred             CCCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHH
Q 005874          287 PDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGV  365 (672)
Q Consensus       287 ~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~  365 (672)
                       .+.+.--++...+.+-..|+.. ++...|.|.+.++..|.++....+    .++.++++|++.-++.+-..++.+.+..
T Consensus       980 -~l~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnps----Lll~~i~~~kvkDt~~~~~tln~c~~~l 1054 (1363)
T KOG3628|consen  980 -QLYKSRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPS----LLLQIISQYKVKDTYPTYSTLNLCQKGL 1054 (1363)
T ss_pred             -ccccCCceEEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHH----HHHHHHhcccccccchhHHHHHHHHhcc
Confidence             7777777888888887888777 677799999999988888888844    4445599999999999988888877754


Q ss_pred             HHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEc-CCCCCHHHHHHHHHHh
Q 005874          366 RKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSG-GAPLSADTQRFINICL  444 (672)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~g-G~~l~~~~~~~~~~~~  444 (672)
                      ..+.+....   .        +........++..+.+.. .---.|.+.....|-+-+.+-+. +.++++-+..  +...
T Consensus      1055 ~t~~enl~~---~--------gnn~s~s~vv~~~~RPr~-ali~sf~klfa~igLsp~avStsys~r~Np~Ic~--r~~s 1120 (1363)
T KOG3628|consen 1055 ETSVENLSK---R--------GNNTSSSIVVPAEERPRI-ALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICL--RSYS 1120 (1363)
T ss_pred             ccccchhhh---h--------hcccccceeeecCCccHH-HHHHHHHHHHHHcCCChhhhcccccccCChHhhh--cccc
Confidence            433322111   0        000000111111111100 00011222222222111111111 1112111110  0001


Q ss_pred             CCceeccc----Cccccccccc-ccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCC
Q 005874          445 GAPIGQGY----GLTETCAGGT-FSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKN  519 (672)
Q Consensus       445 ~~~v~~~Y----G~TE~~~~~~-~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~  519 (672)
                      |+.-...|    ...|.-.-.. ...+........|...+++++.|+++++.+.   |..|+.||||++|...+.+|+.-
T Consensus      1121 g~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~IvnPEtk~p---c~dge~GEIW~~S~hnA~~~~~~ 1197 (1363)
T KOG3628|consen 1121 GPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVNPETKGP---CRDGELGEIWVNSAHNASCSFTI 1197 (1363)
T ss_pred             CCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeCCccccc---cccCCcceEEecccccccccccc
Confidence            11100000    0000000000 0001111123468888999999999555444   56899999999999999988864


Q ss_pred             ch-hhhhhcc----cCC-CCCceEecCcEEEEc------cCc----eEEEEecCCCeEecCCceeeccHHHHHHH-hcCc
Q 005874          520 EE-KTKEVYK----VDD-KGMRWFYTGDVGQVH------ADG----CLEIIDRKKDIVKLQHGEYVSLGKVEAAL-IVSP  582 (672)
Q Consensus       520 ~~-~t~~~~~----~~~-~~~gw~~TGDlg~~~------~dG----~l~i~gR~~d~ik~~~G~~v~p~~iE~~l-~~~~  582 (672)
                      .+ .....|.    .+. .+.+|.||||+|++.      .+|    .||++|-.++.+.+ +|.+++|.+||..+ +.||
T Consensus      1198 ~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl-~GL~h~p~DIE~TV~~vH~ 1276 (1363)
T KOG3628|consen 1198 GDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLEL-NGLRHFPSDIETTVERVHP 1276 (1363)
T ss_pred             CchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEeecccceeee-cCcccCcchHHHHHHHhcc
Confidence            21 1111121    112 367899999999984      233    49999999999999 59999999999999 7899


Q ss_pred             ccceEEEEecCCCCeEEEEEEcChh-HHHHHHHHcChhhhhcCCCCCcceeEEE-EeecCCCCCCCccccccccChHHHH
Q 005874          583 YVDNIMMHADPFHSYCVALVVASQP-AVEEWAAKQGIVGKNARLDKFEIPAKIK-LLSYPWTSEAGLVTAALKIKREAIR  660 (672)
Q Consensus       583 ~V~~~~V~g~~~~~~~va~v~~~~~-~~~~~~~~~~~~~~~~~L~~~~~p~~i~-~~~~~~~~~~~~~t~~gKi~R~~l~  660 (672)
                      .|.+|+|+...  ..+|.++....+ ...+..-    .-.+..|..|.++..++ +++.--.|    +++.|--+|..++
T Consensus      1277 ~I~~cavF~~~--glvVvviE~~gq~~~~~LvP----lIv~~vL~eH~iI~dvV~fV~~G~~p----~~~~gEK~R~~I~ 1346 (1363)
T KOG3628|consen 1277 SIGGCAVFQAT--GLVVVVIECHGQQELADLVP----LIVNVVLEEHYIILDVVAFVDKGVFP----RNSRGEKQRAHIL 1346 (1363)
T ss_pred             cccceeeEeeC--CeEEEEEEecCchhHhhhhH----HHHHHHHhhcceEEEEEEEecCCccc----cCCchhhHHHHHH
Confidence            99999999975  335555554442 2222222    44567788888887765 77765445    9999999999998


Q ss_pred             HHHH-HHHHhhh
Q 005874          661 KAFA-DDLARLY  671 (672)
Q Consensus       661 ~~~~-~~i~~ly  671 (672)
                      +.|- ++++-+|
T Consensus      1347 ~~w~~~kL~~~~ 1358 (1363)
T KOG3628|consen 1347 DSWLAGKLDPIY 1358 (1363)
T ss_pred             HHHHhcccceee
Confidence            8764 4555544

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=100.00  E-value=7.2e-32  Score=289.86  Aligned_cols=318  Identities=16%  Similarity=0.118  Sum_probs=219.9

Q ss_pred             CCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHH---hhcCCCCCCcEEEEecChHhHHH-HHHHHHHhHhCcEEeeC
Q 005874          248 VSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVM---TIVPDLGSKDVYLAYLPLAHVLE-LVAENLIAGVGSAIGYG  323 (672)
Q Consensus       248 ~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~~d~~l~~~pl~h~~~-~~~~~~~l~~G~~i~~~  323 (672)
                      ..++++.+++||||||.||+|.+||.++........   ..+ +++++|++++..++.+..+ +...+.++..|++++..
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~-g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  151 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAA-GGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPI  151 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHc-CCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEec
Confidence            456788999999999999999999999876544332   234 7889999988776654333 33345577888888763


Q ss_pred             C---cccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCc
Q 005874          324 T---PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWG  400 (672)
Q Consensus       324 ~---~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (672)
                      +   +..+++           .+++++||+++++|+++..|.+.........                            
T Consensus       152 ~~~~~~~~~~-----------~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~----------------------------  192 (422)
T TIGR02155       152 SGGQTEKQVQ-----------LIQDFKPDIIMVTPSYMLNLLEELKRMGIDP----------------------------  192 (422)
T ss_pred             CCCCHHHHHH-----------HHHHHCCCEEEEcHHHHHHHHHHHHHcCCCc----------------------------
Confidence            3   233333           3999999999999999999887543211000                            


Q ss_pred             hhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCccccccc-ccccCCCCCCCCccCCCc-
Q 005874          401 LEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAG-GTFSEVDDSSVGRVGAPL-  478 (672)
Q Consensus       401 ~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~-~~~~~~~~~~~~~~G~p~-  478 (672)
                                       ...++|.+++||++++++..+.+++.+|+++++.||+||+++. .......    ...|.++ 
T Consensus       193 -----------------~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~----~~~g~~~~  251 (422)
T TIGR02155       193 -----------------AQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVE----TQDGLHIW  251 (422)
T ss_pred             -----------------ccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeecccc----cCCCceEe
Confidence                             0127999999999999999999999999999999999998532 2211111    1223333 


Q ss_pred             -CCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccC-c-----eE
Q 005874          479 -PCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHAD-G-----CL  551 (672)
Q Consensus       479 -~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~d-G-----~l  551 (672)
                       +...++|+|++++..+   ++|+.|||+++|..            .+.|     ..+||+|||+|+++++ |     .+
T Consensus       252 ~~~~~~eivd~~~g~~v---~~Ge~Gelvvt~~~------------~~~~-----p~~ry~TGDl~~~~~~~Gr~~~~~~  311 (422)
T TIGR02155       252 EDHFYPEIIDPHTGEVL---PDGEEGELVFTTLT------------KEAL-----PVIRYRTRDLTRLLPGTARTMRRMD  311 (422)
T ss_pred             cCeeEEEEECCCCCCCC---CCCCeeEEEEecCC------------cccc-----ceeeEEcCcEEEEECCCCCcccccc
Confidence             3577889994455554   57899999999742            2333     4579999999999875 4     47


Q ss_pred             EEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcChhH-------HHHHHHHcChhhh
Q 005874          552 EIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQPA-------VEEWAAKQGIVGK  621 (672)
Q Consensus       552 ~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~~~-------~~~~~~~~~~~~~  621 (672)
                      ++.||.+|+|+++ |++|+|.+||+++.+||+|...+++.....   +.+++.|++.++.       ..+...+.....+
T Consensus       312 ~i~GR~~d~i~~~-G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~  390 (422)
T TIGR02155       312 RITGRSDDMLIIR-GVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPESYTLRLHEQASLLAGEIQHTI  390 (422)
T ss_pred             cccCccCCeEEEC-CEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEecCcccccchHHHHHHHHHHHHHH
Confidence            8999999999985 999999999999999999984443332222   3566666655322       0111111112445


Q ss_pred             hcCCCCCcceeEEEEee--cCCCCCCCccccccccChH
Q 005874          622 NARLDKFEIPAKIKLLS--YPWTSEAGLVTAALKIKRE  657 (672)
Q Consensus       622 ~~~L~~~~~p~~i~~~~--~~~~~~~~~~t~~gKi~R~  657 (672)
                      ++.+..+   ..|.++.  ..|      +|+ ||++|.
T Consensus       391 ~~~~~~~---~~v~~~~~~~lp------~~~-GK~~~~  418 (422)
T TIGR02155       391 KQEVGVS---MDVHLVEPGSLP------RSE-GKARRV  418 (422)
T ss_pred             HhccCcE---EEEEEECCCCcc------CCC-CCceEE
Confidence            5666554   2455553  555      878 999874

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.96  E-value=4e-29  Score=278.00  Aligned_cols=508  Identities=19%  Similarity=0.139  Sum_probs=323.4

Q ss_pred             CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874           57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI  136 (672)
Q Consensus        57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i  136 (672)
                      ..++.+.+++.+..+|+..+.......         ..      .+...+.||++.....+.++..|...|..+|+.|++
T Consensus        35 ~g~~~~~~~~~~~~~~~~~~~~~~p~~---------~~------~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i   99 (1032)
T KOG1178|consen   35 MGTLEDSFRRELAEAPENTGHVIIPTA---------SE------SGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAI   99 (1032)
T ss_pred             hcchhhHHHHHHhhcccCCCceEeecc---------cc------cccccchhhhhhhcccchhHHHhhhcccccCceEEE
Confidence            357888999999999999999875432         11      334457899999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCcEEEecCCCCC----HHHHHHHHhcc-cceEEEECccchHHHHhhhcCCCCccEEEEecCC
Q 005874          137 FADTRAEWFVALQGCFRRNVTVVTIYASLG----EEALCYSLNET-EVTTVICGSKELKKLVDLSGQLDTVKHVICMDAN  211 (672)
Q Consensus       137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~----~~~l~~~l~~~-~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~  211 (672)
                      ++..+.++++..+|.+++|.++++++|.++    ++.+..+.... ....-+....  +.+......           ..
T Consensus       100 ~~~~~~d~~v~v~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l--~i~~~~~~~-----------~~  166 (1032)
T KOG1178|consen  100 YMLPSVDLVVSVFAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRRL--NIIDILLNS-----------LF  166 (1032)
T ss_pred             eccCcCCeeeeeeehhhcceEEEEecCCCcccccchHHHhhhhhheeccceehhhh--hhHHHHhhc-----------cc
Confidence            999999999999999999999999999998    22111111100 0000000000  000000000           00


Q ss_pred             CcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCC
Q 005874          212 IPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGS  291 (672)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~  291 (672)
                      .....+..       ...|..+....  .........+|..+++.||||+||.||+|..+|..+.....+....+ ..+.
T Consensus       167 ~~~sv~~~-------~~~f~~~~~~~--~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f-~~t~  236 (1032)
T KOG1178|consen  167 PKLSVETI-------ADSFQMVLHNE--DTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTF-PPTG  236 (1032)
T ss_pred             cccchhhc-------cchhhhhhccC--CCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccC-CcCc
Confidence            00000000       01111111111  11112344567899999999999999999999999999999988887 7777


Q ss_pred             CcEEEEecCh-HhHHHHHHHHHHhHhCcEEeeC------CcccccCchhhhhcccccccccccceeeecchHHHHHHHHH
Q 005874          292 KDVYLAYLPL-AHVLELVAENLIAGVGSAIGYG------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDG  364 (672)
Q Consensus       292 ~d~~l~~~pl-~h~~~~~~~~~~l~~G~~i~~~------~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~  364 (672)
                      ++.+-..... +|..-.-...+.|..|..+...      .+..+.+.           +++|+++....+|++.+++...
T Consensus       237 s~~~~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~-----------le~y~i~~~~~~~a~~~~l~~~  305 (1032)
T KOG1178|consen  237 SDRFTFKTSVYFDDTIQKFIGALLFNGNNLLVPTATIKDTPGQLAST-----------LERYGITVSHLLPAMCQLLLAI  305 (1032)
T ss_pred             cchhhhhheeecccchHHHHhhHhhcCceeecccccCccchhhHHHH-----------HHhhhheeeeechhhhhhhhhh
Confidence            7765222222 2222233344556677666551      23333333           9999999999999999888764


Q ss_pred             HHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh
Q 005874          365 VRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL  444 (672)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~  444 (672)
                      ........       -+   ..-+.                 |.      .. .-+.|+....+|++...++...+...+
T Consensus       306 ~~~~~~~l-------~~---~~~~~-----------------dl------~~-~~~~Lkl~~~~~ep~~v~l~~s~~~~~  351 (1032)
T KOG1178|consen  306 LTTSLPLL-------EH---AFSLS-----------------DL------LT-KRSCLKLVVLGGEPLLVSLYTSTFDLL  351 (1032)
T ss_pred             cCcchhhh-------hh---hhhcc-----------------cc------cc-cchhheeeeecCCccchhhhhhhhhcc
Confidence            32210000       00   00000                 00      00 003789999999999999877544443


Q ss_pred             C-CceecccCcccccccccccCCCCCCCCccCCCcCCeEEEEEec---------------CCCCcccC-CCCCCccEEEE
Q 005874          445 G-APIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDW---------------PEGGYLTS-DSPMPRGEIVI  507 (672)
Q Consensus       445 ~-~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~---------------~~~~~~~~-~~~g~~GEi~v  507 (672)
                      - .-...-|+.++..+..+........     .-+-+..+.+++.               ..+..... ..-+..|+.+.
T Consensus       352 ~~~~~~~~y~s~~~~~~~s~~~~~~s~-----~ll~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~  426 (1032)
T KOG1178|consen  352 AEIFFGLPYLSTDPTGLVSYDDFSPSK-----VLLTNENVYSVPKFDSIIGSLTVLESLYRAGGEGEGGVGKGCLGAEQN  426 (1032)
T ss_pred             cceeeeecccCCCCccceeHHhhCccc-----ceecceeEEeccchhhccCCCcceeeeeccCcccCCcccceeeccccc
Confidence            2 2222348888877666544332221     1111111111110               11111000 01112222233


Q ss_pred             ccCcccccccCCchhhhhhcc-cCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccce
Q 005874          508 AGPNVTVGYFKNEEKTKEVYK-VDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDN  586 (672)
Q Consensus       508 ~g~~v~~gY~~~~~~t~~~~~-~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~  586 (672)
                      .+..+..| +..++.....+. .+...+..|+|||.|+..++|.+.+.||.|++||++ |.++.+.+|+.++..||.|.+
T Consensus       427 ~~~~~~~g-~~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~r-G~Ri~L~ei~t~v~~~p~v~~  504 (1032)
T KOG1178|consen  427 LSSWVVDG-YSTPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKDR-GVRIELGELNTVVEVHPDVKE  504 (1032)
T ss_pred             ccceeecc-ccchhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEEc-cEEEehhhhchhhccCcchhh
Confidence            33444445 334443332222 223467899999999999999999999999999985 999999999999999999999


Q ss_pred             EEEEecCCC---CeEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHH
Q 005874          587 IMMHADPFH---SYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRK  661 (672)
Q Consensus       587 ~~V~g~~~~---~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~  661 (672)
                      +++....++   ..++|||++............+ .++...|+.|++|..++.++..|      +|++||||+++|.+
T Consensus       505 ~itl~~~~~~~~~~l~aFvv~~~~~~~~~~~~i~-~~l~~~La~y~vPs~~V~l~~vP------l~~~GKvDkkaL~~  575 (1032)
T KOG1178|consen  505 AITLARENSTVGQTLLAFVVERGGSKSVLIRDIR-NYLKKELASYMLPSLVVPLAKVP------LNPNGKVDKKALLE  575 (1032)
T ss_pred             hheeeeeccccCceEEEEEeccCCCCchhHHHHH-HhhcccccceecceEEEEhhhCC------cCCCCCcChhhhhh
Confidence            998886655   3599999998887665533222 66779999999999999999988      99999999999998

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.93  E-value=4.5e-24  Score=229.52  Aligned_cols=258  Identities=17%  Similarity=0.166  Sum_probs=183.8

Q ss_pred             CCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhc--CCCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeCC
Q 005874          248 VSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV--PDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYGT  324 (672)
Q Consensus       248 ~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~~  324 (672)
                      ..++++.+.+||||||.||+|.+||.++..........+  .+++++|+++...|+.+..+... .+.++..|++++...
T Consensus        84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~  163 (445)
T TIGR03335        84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEG  163 (445)
T ss_pred             CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCC
Confidence            456889999999999999999999999877655443322  37889999999999887666544 455678888876522


Q ss_pred             -cccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhh
Q 005874          325 -PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEK  403 (672)
Q Consensus       325 -~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (672)
                       .....+.           ++.+++|.++++|+.+..|.+...+.....                               
T Consensus       164 ~~~~~~~~-----------i~~~~~t~l~~~ps~ll~La~~~~~~g~~~-------------------------------  201 (445)
T TIGR03335       164 KCTFPIRI-----------IESYRPTGIVASVFKLLRLARRMKAEGIDP-------------------------------  201 (445)
T ss_pred             chhHHHHH-----------HHHhCCCEEEECHHHHHHHHHHHHHcCCCc-------------------------------
Confidence             2222233           889999999999998887776443211000                               


Q ss_pred             HHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCcccccccccccCCCCCCCCccCCCc--CCe
Q 005874          404 LLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPL--PCS  481 (672)
Q Consensus       404 ~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~--~~~  481 (672)
                                    ...++|.+++||++++++..+.+.+.+|+++++.||+||++..+. ...      ..|..+  +.+
T Consensus       202 --------------~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~~~~-c~~------~~g~h~~~d~~  260 (445)
T TIGR03335       202 --------------AESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTMCGE-CQA------VAGLHVPEDLV  260 (445)
T ss_pred             --------------ccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhheEE-ecC------CCCccccCCce
Confidence                          012799999999999999999999999999999999999853221 111      123333  457


Q ss_pred             EEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEcc-C----c----eEE
Q 005874          482 FIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHA-D----G----CLE  552 (672)
Q Consensus       482 ~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~-d----G----~l~  552 (672)
                      .+.|+| ++++..  +++|+.|||++++-....      ......+.       -|+|||++++.. +    |    ++.
T Consensus       261 ~vEIvD-p~~~~~--vp~Ge~GELvvT~L~~~~------~r~~~Pli-------RYrtgD~~~~~~~~~C~CGr~~~r~~  324 (445)
T TIGR03335       261 HLDVYD-PRHQRF--LPDGECGRIVLTTLLKPG------ERCGSLLI-------NYDTEDTTVVISRDRCPCGRTHMRIL  324 (445)
T ss_pred             EEEEEc-CCCCCC--CcCCCceEEEEEecCCCC------ccCCceEE-------EeecCceEEEecCCCCCCCCCcceeC
Confidence            899999 555432  358899999998743210      00111122       589999999732 2    3    255


Q ss_pred             EEecCCCeEecCCceeeccHHHHHHHhcC---cccc
Q 005874          553 IIDRKKDIVKLQHGEYVSLGKVEAALIVS---PYVD  585 (672)
Q Consensus       553 i~gR~~d~ik~~~G~~v~p~~iE~~l~~~---~~V~  585 (672)
                      ..||.||+++++ |.+|+|.+||++|.++   +++.
T Consensus       325 ~~gR~dd~~~~~-g~~~~p~~ie~~l~~~~~~~~~~  359 (445)
T TIGR03335       325 NPEREAETIWIS-GVPFNRVDVERAVFQRENMDSLT  359 (445)
T ss_pred             CCcccCceEEEC-CEEeCHHHHHHHHhccCCCCCCC
Confidence            579999999995 9999999999999884   5554

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.91  E-value=2.4e-23  Score=201.95  Aligned_cols=221  Identities=17%  Similarity=0.112  Sum_probs=160.8

Q ss_pred             HHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCH
Q 005874           64 FEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQ-LGHKKEERVAIFADTRA  142 (672)
Q Consensus        64 ~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~-~g~~~g~~V~i~~~ns~  142 (672)
                      +..+++.+|+++|+.+.+          ++       .++.+.+||+|+.++++++|+.|++ +|+++||+|+|+++|++
T Consensus         2 ~~~~~~~~p~~~al~~~~----------~~-------~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~   64 (227)
T TIGR03089         2 LSPLLAADPASPRLTFYD----------DA-------TGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHW   64 (227)
T ss_pred             hhhhhhhCCCCcEEEEEc----------CC-------CCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCH
Confidence            467788999999997531          11       0122479999999999999999998 79999999999999999


Q ss_pred             HHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccccccccC
Q 005874          143 EWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQS  222 (672)
Q Consensus       143 e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~  222 (672)
                      +++++++||+++|++++|++             .+++++++++++..+.+.     .+  +.++.+..............
T Consensus        65 ~~~~~~~a~~~~G~v~vp~n-------------~s~a~~~v~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~  124 (227)
T TIGR03089        65 QTAVWLLAAWSTGVEVVLAG-------------DPDADVVVTGPDRLAAAA-----GS--GEVVALSLDPLGRRVAGELP  124 (227)
T ss_pred             HHHHHHHHHHHcCCEEEeCC-------------CCCCCEEEeCcchhhhcc-----cC--CceEEEeccccccCCCCCCC
Confidence            99999999999999999995             689999999988776532     11  23333321100000000000


Q ss_pred             CCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEEEecChH
Q 005874          223 GRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLA  302 (672)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~  302 (672)
                      .+  ..+|.+..........+.....++|++.|+||||+         +|.+++.+.    ..+ +++++|+++ .+|++
T Consensus       125 ~~--~~~~~~~~~~~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~-~l~~~D~~l-~~Pl~  187 (227)
T TIGR03089       125 PG--VIDFAPEVRVHGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAA-GLPPGDRVL-VLAWT  187 (227)
T ss_pred             Cc--ccchhhhhhccCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhc-CCCCCCeEE-ecCCC
Confidence            12  23566655432222221213466899999999985         677766654    334 789999999 99999


Q ss_pred             hHHHHHH-HHHHhHhCcEEee---CCcccccCchhhhhcccccccccccce
Q 005874          303 HVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPT  349 (672)
Q Consensus       303 h~~~~~~-~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t  349 (672)
                      |++|+.. .+.+++.|+++++   +++..+++.           ++++|+|
T Consensus       188 H~~gl~~~~~~~l~~G~t~v~~~rFd~~~~l~~-----------i~~~~vT  227 (227)
T TIGR03089       188 DLEDFLATLLAPLAAGGSLVLVTHPDPARLDQI-----------AETERVT  227 (227)
T ss_pred             chHHHHHHHHHHhccCceEEEecCCCHHHHHHH-----------HHhhcCC
Confidence            9999876 7788999999998   777777777           8888886

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.88  E-value=5.7e-21  Score=194.64  Aligned_cols=285  Identities=19%  Similarity=0.151  Sum_probs=202.6

Q ss_pred             CCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhc--CCCCCCcEEEEecChH-hHHHHHHHHHHhHhCcEEe
Q 005874          245 DYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV--PDLGSKDVYLAYLPLA-HVLELVAENLIAGVGSAIG  321 (672)
Q Consensus       245 ~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~~d~~l~~~pl~-h~~~~~~~~~~l~~G~~i~  321 (672)
                      .....+++..|--||||||+|+-+.+|+..+-.....+...+  .+...+|++....-.. +..++...+++--.|++++
T Consensus        85 ~~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vi  164 (438)
T COG1541          85 FAVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVI  164 (438)
T ss_pred             ccccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEE
Confidence            334456777788899999999999999988776666655554  4677788775544322 1222344455555777776


Q ss_pred             eCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCch
Q 005874          322 YGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGL  401 (672)
Q Consensus       322 ~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (672)
                      -..+...        ...+..++.++||++.++|+.+..|.+.+.+......                            
T Consensus       165 p~~~g~~--------~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~----------------------------  208 (438)
T COG1541         165 PISGGNT--------ERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPD----------------------------  208 (438)
T ss_pred             ccCCccH--------HHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChh----------------------------
Confidence            5333221        1123338999999999999999999998766531100                            


Q ss_pred             hhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCcccccccccccCCCCCCCCccCCCcCCe
Q 005874          402 EKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCS  481 (672)
Q Consensus       402 ~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~  481 (672)
                                       -.++|.+++|+|+++++..+.+...+|+..++.||+||..+.++....... -.+  ..-+..
T Consensus       209 -----------------~~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~eC~~~~-glh--i~eD~~  268 (438)
T COG1541         209 -----------------KLSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGECTERN-GLH--IWEDHF  268 (438)
T ss_pred             -----------------hcceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCccccccccc-CCC--cchhhc
Confidence                             028999999999999999999999999999999999999776522211111 111  223567


Q ss_pred             EEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccC----ce-----EE
Q 005874          482 FIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHAD----GC-----LE  552 (672)
Q Consensus       482 ~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~d----G~-----l~  552 (672)
                      .+.|+|+.++.+++   .|+.|||.++.=.            ++.+     .-=-|+|||+..+.++    |+     -.
T Consensus       269 ~~Ei~dP~t~e~l~---dge~GelV~T~L~------------~~~~-----PlIRYrtgDit~i~~~~C~cGr~~~ri~~  328 (438)
T COG1541         269 IFEIVDPETGEQLP---DGERGELVITTLT------------KEGM-----PLIRYRTGDITVILSDPCGCGRTHRRIER  328 (438)
T ss_pred             eeeeecCCcCccCC---CCCeeEEEEEecc------------ccCc-----ceEEEEcCCeeEecccCCCCCCccccccc
Confidence            88999977777765   7889999987532            1111     2226999999999763    32     67


Q ss_pred             EEecCCCeEecCCceeeccHHHHHHHhcCcccc---eEEEEecCCCCeEEEEEEcCh
Q 005874          553 IIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVD---NIMMHADPFHSYCVALVVASQ  606 (672)
Q Consensus       553 i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~---~~~V~g~~~~~~~va~v~~~~  606 (672)
                      |.||.+|+++++ |.+|+|..||+++.+++.+.   ++++........+..-|+..+
T Consensus       329 I~GR~dD~l~~~-G~~vfp~~ie~~l~~~~~~~~~yqi~~~~~~~~d~L~V~vE~~~  384 (438)
T COG1541         329 IEGRSDDMLIVR-GVNVFPSQIERVLLQIPEVTPHYQIILTRNGGLDELTVRVELEN  384 (438)
T ss_pred             cCcccccEEEEC-CEEeCHHHHHHHHhcccCCCceEEEEEecCCCCceEEEEEEecC
Confidence            889999999997 99999999999999999999   555555333345666666654

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.84  E-value=6e-20  Score=198.45  Aligned_cols=510  Identities=16%  Similarity=0.148  Sum_probs=326.7

Q ss_pred             CCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHH-HHHhcCCCCCCEE
Q 005874           56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFAS-GLAQLGHKKEERV  134 (672)
Q Consensus        56 ~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~-~L~~~g~~~g~~V  134 (672)
                      ....+..+++.+-.+++...|.+.-           |.+       |...++||..+..+|.++|+ .|-+.|+.++++|
T Consensus        92 a~~d~~avl~~~~nhs~~~ta~i~i-----------d~k-------gk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~v  153 (1363)
T KOG3628|consen   92 ALTDIIAVLRYRRNHSATSTAHICI-----------DKK-------GKATSITWDKLLNRAEKVAHVELNKSGLKPGDRV  153 (1363)
T ss_pred             hhcchHHHHHhhccCCCCCceEEEE-----------cCC-------CceeeeeHHHHHHHHHhhccHHhhccCCCCCcEE
Confidence            4556777888888889999999874           333       45678999999999999999 5555699999999


Q ss_pred             EEEcCCC--HHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCC
Q 005874          135 AIFADTR--AEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANI  212 (672)
Q Consensus       135 ~i~~~ns--~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~  212 (672)
                      .++...+  .|+++..++|...|++++|+.+..+.+++..+++....+++++.......+..........+.+       
T Consensus       154 vL~Y~~~e~ie~~isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~v-------  226 (1363)
T KOG3628|consen  154 VLYYRKCEAIEFLISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKAV-------  226 (1363)
T ss_pred             EEEEEhhhhhHHhhhhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHHH-------
Confidence            9999877  9999999999999999999999999999999999999999999877655444322111000000       


Q ss_pred             cccccccccCCCeEEEeHHHHHhcc-cCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhc-----
Q 005874          213 PSAVSSVEQSGRWKITSFADVQILG-RENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV-----  286 (672)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----  286 (672)
                                   .++...++.-.. .+....+.-.-+  .++|-||++++|.--|++.+|+ ++.+.+.+....     
T Consensus       227 -------------~~w~t~~~k~~~~~~k~~~P~~~~~--~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa  290 (1363)
T KOG3628|consen  227 -------------AWWKTNDFKGNYTKDKIKKPRMQLP--YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPA  290 (1363)
T ss_pred             -------------HhhhcccccceeehhhccCCceeee--eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChH
Confidence                         011111111000 000011111112  8899999999999999999998 655544433221     


Q ss_pred             --------------CCCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEee------CCcccccCchhhhhccccccccc
Q 005874          287 --------------PDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY------GTPLTLTDTSSKIKKGTQGDASV  345 (672)
Q Consensus       287 --------------~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~------~~~~~l~~~~~~~~~~~~~~i~~  345 (672)
                                    ......++++..+...-..|++. .+.+++.|.|...      ..|..+...           +-+
T Consensus       291 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l-----------~~k  359 (1363)
T KOG3628|consen  291 RFAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANL-----------ITK  359 (1363)
T ss_pred             HHHHhhhcchhhhccccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhh-----------hcc
Confidence                          13456788888888888888877 7788999999887      233333333           778


Q ss_pred             ccceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEE
Q 005874          346 LRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFI  425 (672)
Q Consensus       346 ~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i  425 (672)
                      +|.+++..--..+.+......+..                 |                   ..+.|.+.+....|+++.+
T Consensus       360 ~R~~~~ltd~~~Lkq~~~ny~~~p-----------------~-------------------a~~s~~k~~t~d~sslk~C  403 (1363)
T KOG3628|consen  360 YRATWSLTDYAGLKQPVYNYQEDP-----------------K-------------------ATLSFKKYKTPDLSSLKGC  403 (1363)
T ss_pred             ceeEEEeecccccCcccccccCCc-----------------c-------------------cccchhhccCCCccceeee
Confidence            888888776555444332211100                 0                   0122445555566899999


Q ss_pred             EEcCCCCCHHHHHHHHHHh----CCc-eeccc-----------------CcccccccccccCCCC---------------
Q 005874          426 LSGGAPLSADTQRFINICL----GAP-IGQGY-----------------GLTETCAGGTFSEVDD---------------  468 (672)
Q Consensus       426 ~~gG~~l~~~~~~~~~~~~----~~~-v~~~Y-----------------G~TE~~~~~~~~~~~~---------------  468 (672)
                      .+....+..+...-..+.+    |.. +-..|                 +++|.+...--.+...               
T Consensus       404 ~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L  483 (1363)
T KOG3628|consen  404 MVTCTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEAL  483 (1363)
T ss_pred             EEeeeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeecccc
Confidence            9999999998866555443    211 11111                 2233322211111100               


Q ss_pred             ---------------CCCCccCCCcCC-eEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccC--
Q 005874          469 ---------------SSVGRVGAPLPC-SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVD--  530 (672)
Q Consensus       469 ---------------~~~~~~G~p~~~-~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~--  530 (672)
                                     .....+|...|+ +.+.+++ |+.+.+  |..++.|||||.+++...+||.-+..|...|...  
T Consensus       484 ~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~-~~t~~L--C~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~  560 (1363)
T KOG3628|consen  484 KLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVN-PDTNQL--CKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPV  560 (1363)
T ss_pred             ccceEEEcchhhhhhcCccccceecccceEEEEeC-CCcccc--cccCcceeEEEecCCcccceeeccccccceEEeeec
Confidence                           001345655554 5677777 555554  6789999999999999999998887777666543  


Q ss_pred             ------CCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHH----------HHHHHhcCcccceEEEEecCC
Q 005874          531 ------DKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGK----------VEAALIVSPYVDNIMMHADPF  594 (672)
Q Consensus       531 ------~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~----------iE~~l~~~~~V~~~~V~g~~~  594 (672)
                            +....+.|||-+|++. +|.++++|-++|.+.--.|.+++..+          ++-+++..+.|-++.++-   
T Consensus       561 ~s~~~~~~n~~FmRtGLlGFv~-~gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~---  636 (1363)
T KOG3628|consen  561 ESSGKPPSNVPFMRTGLLGFVH-NGKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE---  636 (1363)
T ss_pred             cccCCCCccchhhhhcceeeee-CCeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee---
Confidence                  2345789999999997 66677776666555433477765544          345667778888888887   


Q ss_pred             CCeEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcce--eEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874          595 HSYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIP--AKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       595 ~~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p--~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                      +++.+.+++..+.+......+-..... +.+-...+.  -.+.+++.---|    +|+.|-|.-.+.++.|.+
T Consensus       637 ~E~~~Vv~~esP~a~e~~~~q~~~~v~-q~l~~iHqv~vyCilivP~~tLP----rt~~~Gi~~~~~k~~F~~  704 (1363)
T KOG3628|consen  637 DEHIVVVVLESPDATEENSFQWMSRVF-QALDSIHQVGVYCILIVPANTLP----RTPLGGIHNNECKQAFLE  704 (1363)
T ss_pred             cceEEEEEEeCcchhhhhhhhHHHHHH-HHHHHHhcccceEEEEeccccCC----CccccccccHHHHHHHHc
Confidence            455565666666553322111100111 122222222  234455543223    899888999999999875

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.77  E-value=9.9e-19  Score=179.26  Aligned_cols=117  Identities=18%  Similarity=0.165  Sum_probs=99.2

Q ss_pred             CCceEecCcEEEE-ccCceEEEEecCCCeEecCCc---eeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcC
Q 005874          533 GMRWFYTGDVGQV-HADGCLEIIDRKKDIVKLQHG---EYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVAS  605 (672)
Q Consensus       533 ~~gw~~TGDlg~~-~~dG~l~i~gR~~d~ik~~~G---~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~  605 (672)
                      .+|||+|||+|++ |+||.|++.||.+      +|   ++|+|+ ||+++.+||+|.+|+|+|.+++   +.++|+|++.
T Consensus       207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~------~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~  279 (365)
T PRK09188        207 SRIWLATGKKVYNFITRGLFSWSDGEG------TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAE  279 (365)
T ss_pred             cCcEEeCCCEEEEEcCCCeEEEEecCc------CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEEC
Confidence            7899999999998 7999999999997      58   899999 9999999999999999998766   3599999976


Q ss_pred             hhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHHH
Q 005874          606 QPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDL  667 (672)
Q Consensus       606 ~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i  667 (672)
                      .....+...    .+++++|+. ++|+.|.++++.|      +|++||++|++|++...+..
T Consensus       280 ~~~~~~el~----~~l~~~L~~-kvP~~v~~v~~lP------~t~~GKi~R~~Lr~~~~~~~  330 (365)
T PRK09188        280 LPADEKSLR----ARLAGAKPP-KPPEHIQPVAALP------RDADGTVRDDILRLIAMNQI  330 (365)
T ss_pred             CCCCHHHHH----HHHHhhchh-cCCcEEEEECCCC------CCCCCCccHHHHHHHhhccc
Confidence            421111122    667789999 9999999999987      99999999999998864433

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.56  E-value=5.5e-13  Score=140.34  Aligned_cols=262  Identities=12%  Similarity=0.101  Sum_probs=157.7

Q ss_pred             EEEEeecCCCCCCceEEeehHHHHHHHHHHHhh-c-CCCCCCcEEEEecC-hHhHHHHHHHHHHhHh-CcEEeeCCcccc
Q 005874          253 AVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI-V-PDLGSKDVYLAYLP-LAHVLELVAENLIAGV-GSAIGYGTPLTL  328 (672)
Q Consensus       253 a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~-~-~~~~~~d~~l~~~p-l~h~~~~~~~~~~l~~-G~~i~~~~~~~l  328 (672)
                      ..+..||||||.|-.+..+.............. + .++..++++..++. -.+.+..      +.. ...+-+++.   
T Consensus       102 ~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~~ly~~------~~~~~~~~~~~~l---  172 (430)
T TIGR02304       102 ISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADNNLYQS------VNNRWISLDFFDL---  172 (430)
T ss_pred             EEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccChhHHHH------HHhccceeeecCC---
Confidence            456779999999999999887654433332222 2 24445555544421 1121111      111 111122222   


Q ss_pred             cCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHH
Q 005874          329 TDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNL  408 (672)
Q Consensus       329 ~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (672)
                      .+.    ....+..+++++||++.+.|+.+..|++.+.+....                                     
T Consensus       173 ~~~----~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-------------------------------------  211 (430)
T TIGR02304       173 LAP----FQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-------------------------------------  211 (430)
T ss_pred             CcC----HHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-------------------------------------
Confidence            222    222344499999999999999999998865442110                                     


Q ss_pred             HHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCcccccccccccCCCCCCCCccCCCcCCeEEEEEec
Q 005874          409 LVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDW  488 (672)
Q Consensus       409 l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~  488 (672)
                                 ..++.++++||+++++..+.+.+.||+++++.||+|| +.++.-+..+   .-++-...--+|..++| 
T Consensus       212 -----------~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~eC~~g---~lHl~ed~~~vE~~ivD-  275 (430)
T TIGR02304       212 -----------IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLASTCRCG---TLHLNEDLVHIEKQYLD-  275 (430)
T ss_pred             -----------CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEEecCCC---CEEEccccEEEEeeEEC-
Confidence                       1689999999999999999999999999999999999 4433222111   01221111123444667 


Q ss_pred             CCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccC----ce----E-EEEecCCC
Q 005874          489 PEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHAD----GC----L-EIIDRKKD  559 (672)
Q Consensus       489 ~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~d----G~----l-~i~gR~~d  559 (672)
                      +++          .++..|++      +.+    ....+.       -|+|||++.+.++    |.    | .|.||.+|
T Consensus       276 ~~~----------~~~~ViT~------L~n----~~~PlI-------RYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD  328 (430)
T TIGR02304       276 EHK----------RFVPIITD------FTR----TTQPIV-------RYRLNDILVESEQPCSCGSATMAIERIEGRQDD  328 (430)
T ss_pred             CCC----------ceEEEEec------CCC----ccceEE-------eeeCCCEEEeCCCCCCCCCcccccCCccCccCC
Confidence            322          13333333      221    111222       5999999998543    32    4 48899999


Q ss_pred             eEec--CCceee--ccHHHHHHH-hcCcccceEEEEecCCCCeEEEEEEcChhH
Q 005874          560 IVKL--QHGEYV--SLGKVEAAL-IVSPYVDNIMMHADPFHSYCVALVVASQPA  608 (672)
Q Consensus       560 ~ik~--~~G~~v--~p~~iE~~l-~~~~~V~~~~V~g~~~~~~~va~v~~~~~~  608 (672)
                      ++++  .+|..+  +|..++.++ ...++|.+.-++... ...+...+++.+..
T Consensus       329 ~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~~-~~~l~v~~~~~~~~  381 (430)
T TIGR02304       329 IFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQTG-SAQLELIADCELEM  381 (430)
T ss_pred             EEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEcc-CCeEEEEEEeChHH
Confidence            9984  456555  899999885 567899988777654 34455555554443

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=98.70  E-value=2.3e-08  Score=78.13  Aligned_cols=67  Identities=24%  Similarity=0.161  Sum_probs=50.4

Q ss_pred             HHHHHHhcCcccceEEEEecCCC---CeEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeE--EEEeec-CCCCCCC
Q 005874          573 KVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAK--IKLLSY-PWTSEAG  646 (672)
Q Consensus       573 ~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~--i~~~~~-~~~~~~~  646 (672)
                      |||+++.+||+|.+|+|++.+++   +.++|+|++    ..+...    .+++++|++|++|+.  ++.+++ .|     
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~----~~~~i~----~~~~~~l~~~~~P~~~~~v~~~~~lP-----   67 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL----DEEEIR----DHLRDKLPPYMVPRRIRFVRLDEELP-----   67 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE----HHHHHH----HHHHHHS-GGGS-SEEEEEEESSSEE-----
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe----eecccc----cchhhhCCCcceeeEEEEccccCcCC-----
Confidence            79999999999999999998765   479999999    112122    666788999999954  444455 55     


Q ss_pred             ccccccc
Q 005874          647 LVTAALK  653 (672)
Q Consensus       647 ~~t~~gK  653 (672)
                       +|++||
T Consensus        68 -~t~~GK   73 (73)
T PF13193_consen   68 -RTPSGK   73 (73)
T ss_dssp             -BETTSS
T ss_pred             -CCCCCC
Confidence             999998

...

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.70  E-value=1.1e-06  Score=90.71  Aligned_cols=236  Identities=17%  Similarity=0.136  Sum_probs=130.4

Q ss_pred             CCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhc---CCCC-CCcEEEEecChHhHHH-H---H-HHHHHhHhCcE
Q 005874          249 SADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV---PDLG-SKDVYLAYLPLAHVLE-L---V-AENLIAGVGSA  319 (672)
Q Consensus       249 ~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~---~~~~-~~d~~l~~~pl~h~~~-~---~-~~~~~l~~G~~  319 (672)
                      ++++..++-||||||.|--+.+.+..+.....++...+   .... ....++...|-..... +   . .....+..++.
T Consensus        88 ~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~~  167 (365)
T PF04443_consen   88 EEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGSR  167 (365)
T ss_pred             hhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCce
Confidence            45677788899999998556666666665554444433   1222 2234444445332111 1   1 12222334444


Q ss_pred             EeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCC
Q 005874          320 IGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAW  399 (672)
Q Consensus       320 i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (672)
                      ..+ +...+ +. ......+.......+|..+++.|.++-.+...+++......                          
T Consensus       168 ~~l-~~~~l-d~-~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~--------------------------  218 (365)
T PF04443_consen  168 FAL-DNDEL-DL-EGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFR--------------------------  218 (365)
T ss_pred             eee-cCCcc-CH-HHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCccc--------------------------
Confidence            222 11111 10 11111222223466788999999877766665443321110                          


Q ss_pred             chhhHHHHHHHHHHHHHHcCCceEEEEEcC------CCCCH-HHHHHHHHHhCC----ceecccCcccccccccccCCCC
Q 005874          400 GLEKLLWNLLVFSKVRAILGGRIRFILSGG------APLSA-DTQRFINICLGA----PIGQGYGLTETCAGGTFSEVDD  468 (672)
Q Consensus       400 ~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG------~~l~~-~~~~~~~~~~~~----~v~~~YG~TE~~~~~~~~~~~~  468 (672)
                                        +.+..+.+-.||      +.+++ +..+.+++.+|+    .+++.||+||......-.    
T Consensus       219 ------------------L~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~----  276 (365)
T PF04443_consen  219 ------------------LPKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYEC----  276 (365)
T ss_pred             ------------------CCCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeC----
Confidence                              112456666775      44654 467778888888    699999999976432222    


Q ss_pred             CCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccC
Q 005874          469 SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHAD  548 (672)
Q Consensus       469 ~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~d  548 (672)
                       ..++.  ++|.- |.|+|+.+...   ++.|+.|-|.+-.+... .                 .-+..-|.|+|.+..+
T Consensus       277 -~~~~~--~~p~w-V~iRDp~tl~~---~~~Ge~Gli~vidl~~~-s-----------------~p~~IlTeDlGvl~~~  331 (365)
T PF04443_consen  277 -GHGHF--HVPPW-VIIRDPETLEP---LPPGETGLIQVIDLANT-S-----------------YPGFILTEDLGVLHGD  331 (365)
T ss_pred             -CCCcc--cCCCe-EEEECCCCCcC---CCCCCeeEEEEEccccc-C-----------------CCcEEEEcceeeecCC
Confidence             11111  22323 77888544443   56789999988776542 1                 1234779999988654


Q ss_pred             --------ceEEEEecCCCe
Q 005874          549 --------GCLEIIDRKKDI  560 (672)
Q Consensus       549 --------G~l~i~gR~~d~  560 (672)
                              ..+.|+||.+.-
T Consensus       332 ~~c~cr~g~~f~vlGR~~~a  351 (365)
T PF04443_consen  332 DDCGCRKGKYFEVLGRADGA  351 (365)
T ss_pred             CCCCCccCCEEEEEeCCCCC
Confidence                    279999998753

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=98.24  E-value=2e-05  Score=86.38  Aligned_cols=164  Identities=21%  Similarity=0.239  Sum_probs=91.8

Q ss_pred             HcCCceEEEEEcCCCCCHHHHHHHHHHhC-Cc-eecccCcccccccccccCCCCCCCCccCCCcCCe-EEEEEecCCCC-
Q 005874          417 ILGGRIRFILSGGAPLSADTQRFINICLG-AP-IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCS-FIKLIDWPEGG-  492 (672)
Q Consensus       417 ~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~-v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~-~v~i~d~~~~~-  492 (672)
                      .+.++|+.+.+-+..-.....+.++..++ .+ +..+|++||+.......   ...  ..+.+.++. -+..++.++.+ 
T Consensus       264 ~lWP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i~i~~~---~~~--~~~~l~~~~~ffEFip~~~~~~  338 (528)
T PF03321_consen  264 RLWPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFIGIPLD---PED--PGYVLAPDSGFFEFIPVDEDEQ  338 (528)
T ss_dssp             HHSTT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEEEEES----CCC----EEE-TTSSEEEEEE-STT--
T ss_pred             HhCCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEEEEecC---CCC--CceEeecCCeEEEEEeccCCcc
Confidence            34568996666544444456677777775 33 44799999964332222   111  112222322 44455543322 


Q ss_pred             -------c--ccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEcc--Cc--eEEEEecCCC
Q 005874          493 -------Y--LTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHA--DG--CLEIIDRKKD  559 (672)
Q Consensus       493 -------~--~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~--dG--~l~i~gR~~d  559 (672)
                             .  ....+.|+.-||.|+..+   |.|                  -|+.||+.++..  ++  .+.|+||.+.
T Consensus       339 ~~~~~~~~l~~~ele~G~~YelviTt~~---GLy------------------RY~iGDvVrv~gf~~~~P~i~F~~R~~~  397 (528)
T PF03321_consen  339 NPSEQPKTLLLHELEVGEEYELVITTNS---GLY------------------RYRIGDVVRVTGFYNQTPRIEFVGRRGQ  397 (528)
T ss_dssp             -----SSSEEGGG--TT-EEEEEEESTT---S-S------------------SEEECEEEEEEEEETTEEEEEEEEETTE
T ss_pred             cccCCCceecHHHhcCCCeEEEEEeccc---cee------------------eeecCCEEEEeeccCCCcEEEEeccCCc
Confidence                   1  112456777788887542   333                  489999999852  45  7999999999


Q ss_pred             eEecCCceeeccHHHHHHHhcC-----cccceEEEEec---CCCCeEEEEEEcChh
Q 005874          560 IVKLQHGEYVSLGKVEAALIVS-----PYVDNIMMHAD---PFHSYCVALVVASQP  607 (672)
Q Consensus       560 ~ik~~~G~~v~p~~iE~~l~~~-----~~V~~~~V~g~---~~~~~~va~v~~~~~  607 (672)
                      ++.+. ||+++-.+|++++.+.     -.+.+.++..+   ..+.+.+.++.+...
T Consensus       398 ~l~l~-gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~  452 (528)
T PF03321_consen  398 VLSLF-GEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELEGE  452 (528)
T ss_dssp             EE-SS-S--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEECS-
T ss_pred             eeecc-eeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeCCC
Confidence            99985 9999999999999654     23567777766   244566666666655

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=97.62  E-value=0.0015  Score=72.05  Aligned_cols=138  Identities=15%  Similarity=0.217  Sum_probs=81.9

Q ss_pred             HHcCCc---eEEEEEcCCCCCHHHHHHHHHHh-CCc-eecccCcccccccccccCCCCCCCCccCCC--cCCeEEEEEec
Q 005874          416 AILGGR---IRFILSGGAPLSADTQRFINICL-GAP-IGQGYGLTETCAGGTFSEVDDSSVGRVGAP--LPCSFIKLIDW  488 (672)
Q Consensus       416 ~~~~~~---lr~i~~gG~~l~~~~~~~~~~~~-~~~-v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p--~~~~~v~i~d~  488 (672)
                      ..+.++   +..+..||..   .....++..+ +.+ +..+|++||+....-..+  ......++..  +.+.-+..++.
T Consensus       298 ~~lWPnl~~i~~~~~G~~~---~Y~~~l~~~~g~~~~~~~~Y~ASEg~~gi~~~~--~~~p~~~~~~l~~~~~ffEFiP~  372 (597)
T PLN02249        298 TKIWPNTKYLDVIVTGAMA---QYIPMLEYYSGGLPMASTIYASSESYFGINLNP--MCKPSEVSYTIMPNMAYFEFLPH  372 (597)
T ss_pred             HHhCCCCCeEEEEecCChH---HHHHHHHHHcCCCccccccccccceEEEeecCC--CCCCCCcceEecCCcEEEEeeec
Confidence            345577   6666777755   5556666655 343 558999999653332211  1111112221  12444455543


Q ss_pred             CCCCc----------ccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccC----ceEEEE
Q 005874          489 PEGGY----------LTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHAD----GCLEII  554 (672)
Q Consensus       489 ~~~~~----------~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~d----G~l~i~  554 (672)
                      ++.+.          +...+.|..=|+.|+..+   |.|                  -|+.||+.++..=    =.|.|+
T Consensus       373 ~~~~~~~~~~~~~v~l~eVe~G~~Y~lVvTT~~---GLy------------------RY~iGDvVrvtgf~~~~P~i~F~  431 (597)
T PLN02249        373 NHDGDGALDETSLVELADVEVGKEYELVITTYA---GLY------------------RYRVGDILRVTGFHNSAPQFKFI  431 (597)
T ss_pred             ccCCcccCCCCcEecHHHcCCCCeEEEEEEccc---cee------------------EeecCCEEEEeeccCCCcEEEEE
Confidence            22111          111345566667665421   222                  3889999998532    369999


Q ss_pred             ecCCCeEecCCceeeccHHHHHHHhc
Q 005874          555 DRKKDIVKLQHGEYVSLGKVEAALIV  580 (672)
Q Consensus       555 gR~~d~ik~~~G~~v~p~~iE~~l~~  580 (672)
                      ||.+.++.+ .||++.-++++.++.+
T Consensus       432 gR~~~~ls~-~GEKl~e~~v~~Av~~  456 (597)
T PLN02249        432 RRKNVLLSI-ESDKTDEADLQKAVEN  456 (597)
T ss_pred             ccCCcceec-ccccCCHHHHHHHHHH
Confidence            999999998 5999999999998865

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=97.37  E-value=0.018  Score=63.14  Aligned_cols=141  Identities=15%  Similarity=0.148  Sum_probs=86.7

Q ss_pred             HHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCcee-cccCcccccccccccCCCCCCCC-ccCCCcCCe-EEEEEecCCC
Q 005874          416 AILGGRIRFILSGGAPLSADTQRFINICL-GAPIG-QGYGLTETCAGGTFSEVDDSSVG-RVGAPLPCS-FIKLIDWPEG  491 (672)
Q Consensus       416 ~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~-~~G~p~~~~-~v~i~d~~~~  491 (672)
                      ..+.++++.|.+-...-.......++... |.+++ -+||+||+....-..+.  .... .....+|+. -+..++.+++
T Consensus       289 ~rLWP~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~ginl~p~--~~p~~~sy~L~p~~~yFEFip~~~~  366 (606)
T PLN02247        289 KRLWPRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINLKPL--SDPSDVSYTLLPNMAYFEFLPVDKN  366 (606)
T ss_pred             HHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEEEeccCcC--CCccCCceeecCCcEEEEEeecCCC
Confidence            56678999988755554566667777665 56655 59999996543332221  1111 223333443 2444543332


Q ss_pred             Cc--------------------------ccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEE
Q 005874          492 GY--------------------------LTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQV  545 (672)
Q Consensus       492 ~~--------------------------~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~  545 (672)
                      +.                          +...+.|+.=||.|+.-   .|.|                  -||.||+.++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvTt~---~GLY------------------RYrlGDvv~V  425 (606)
T PLN02247        367 NGEVIHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTTF---TGLY------------------RYRVGDILMV  425 (606)
T ss_pred             cccccccccccccccccccccccCceecHHHccCCCeEEEEEEec---CceE------------------EEecCCEEEE
Confidence            21                          00134455566666532   1211                  4889999998


Q ss_pred             c----cCceEEEEecCCCeEecCCceeeccHHHHHHHhc
Q 005874          546 H----ADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIV  580 (672)
Q Consensus       546 ~----~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~  580 (672)
                      .    .-=.+.|++|.+.+..+ .|++.+-.++.+++.+
T Consensus       426 ~GF~n~~P~~~Fv~R~~~vlsi-~gEK~tE~~l~~Av~~  463 (606)
T PLN02247        426 TGFYNNAPQFRFVQRRNVVLSI-DTDKTNEEDLLKAVTQ  463 (606)
T ss_pred             eeecCCCceEEEEecCCceeec-ccccCCHHHHHHHHHH
Confidence            4    23469999999999998 5999999999888854

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=97.33  E-value=0.036  Score=60.70  Aligned_cols=165  Identities=13%  Similarity=0.125  Sum_probs=96.5

Q ss_pred             HHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCcee-cccCcccccccccccCCCCCCCCc-cCCCcCCe-EEEEEecCCC
Q 005874          416 AILGGRIRFILSGGAPLSADTQRFINICL-GAPIG-QGYGLTETCAGGTFSEVDDSSVGR-VGAPLPCS-FIKLIDWPEG  491 (672)
Q Consensus       416 ~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~-~G~p~~~~-~v~i~d~~~~  491 (672)
                      ..+.++++.|.+-...-.......++... |.+++ -+|++||+....-..+.  ..... ....+|+. -+..++.++.
T Consensus       300 ~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~~ginl~P~--~~p~~~sy~L~p~~~yFEFip~~~~  377 (612)
T PLN02620        300 TRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPL--CKPSEVSYTLIPTMAYFEFLPVHRN  377 (612)
T ss_pred             HHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceEEEeccCCC--CCcccceeeecCCcEEEEEeeccCc
Confidence            56778999888755555555666666555 66655 69999996543322221  22222 22333443 2344432211


Q ss_pred             Cc---------------------ccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEcc---
Q 005874          492 GY---------------------LTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHA---  547 (672)
Q Consensus       492 ~~---------------------~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~---  547 (672)
                      +.                     +...+.|..=|+.|+.-   .|.|                  -||.||+.++..   
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt~---~GLy------------------RYrlGDvv~V~Gf~n  436 (612)
T PLN02620        378 NGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTTY---AGLY------------------RYRVGDVLRVAGFKN  436 (612)
T ss_pred             ccccccccccccccccccCccccHHHccCCCeEEEEEEec---CceE------------------EEecCCEEEEeeecC
Confidence            00                     11134555666666532   1222                  488999999842   


Q ss_pred             -CceEEEEecCCCeEecCCceeeccHHHHHHHhcCcc--------cceEEEEec--CCCCeEEEEEEc
Q 005874          548 -DGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPY--------VDNIMMHAD--PFHSYCVALVVA  604 (672)
Q Consensus       548 -dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~--------V~~~~V~g~--~~~~~~va~v~~  604 (672)
                       .=.+.|++|.+.+..+ .|++.+-.++..++.+...        +.|..-+.+  ..+.+-+.++..
T Consensus       437 ~~P~~~Fv~R~~~~lsi-~gEK~tE~~l~~Av~~a~~~l~~~~~~l~dyts~~d~~~~PghYvl~~El  503 (612)
T PLN02620        437 KAPQFSFICRKNVVLSI-DSDKTDEVELQNAVKNAVNHLVPFDASLTEYTSYADTSTIPGHYVLFWEL  503 (612)
T ss_pred             CCceEEEEeecCceeec-ccccCCHHHHHHHHHHHHHhhcccCceeeeEEeccccCCCCCceEEEEEE
Confidence             3469999999999998 6999999999887744321        233333343  334566777754

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=93.99  E-value=0.49  Score=49.72  Aligned_cols=107  Identities=16%  Similarity=-0.012  Sum_probs=84.6

Q ss_pred             cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCC--HHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceE
Q 005874          104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTR--AEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTT  181 (672)
Q Consensus       104 ~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns--~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~  181 (672)
                      ..-+|+.++...+..+|+.|...|..+||+|..+..-+  ..-+...+|+.++|++++|+.+ -.-+....++++.++++
T Consensus       107 ~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~-g~~~~~~~l~~df~~tv  185 (438)
T COG1541         107 VFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISG-GNTERQLELMKDFKPTV  185 (438)
T ss_pred             eeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCC-ccHHHHHHHHHhcCCcE
Confidence            34689999999999999999999999999988877622  1126778899999999999988 34577788999999999


Q ss_pred             EEECccchHHHHhhhcCC------CCccEEEEecCC
Q 005874          182 VICGSKELKKLVDLSGQL------DTVKHVICMDAN  211 (672)
Q Consensus       182 vi~~~~~~~~l~~~~~~~------~~l~~ii~~~~~  211 (672)
                      |.+.+..+-.+.+...+.      -++|.++...+.
T Consensus       186 I~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~  221 (438)
T COG1541         186 IAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEP  221 (438)
T ss_pred             EEEChHHHHHHHHHHHHcCCChhhcceeEEEEeccc
Confidence            999999887666655333      256666665444

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=90.04  E-value=0.86  Score=37.37  Aligned_cols=43  Identities=16%  Similarity=-0.018  Sum_probs=29.8

Q ss_pred             ceeeccHHHHHHHhcCcccc-eEEEEec--CCCCeEEEEEEcChhH
Q 005874          566 GEYVSLGKVEAALIVSPYVD-NIMMHAD--PFHSYCVALVVASQPA  608 (672)
Q Consensus       566 G~~v~p~~iE~~l~~~~~V~-~~~V~g~--~~~~~~va~v~~~~~~  608 (672)
                      |.+|+|..||+++.++|++. +..++-.  .....+...|...++.
T Consensus         1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~   46 (96)
T PF14535_consen    1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGF   46 (96)
T ss_dssp             TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTC
T ss_pred             CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCcc
Confidence            78999999999999999998 4333332  3334566677766653

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=86.94  E-value=6.1  Score=42.42  Aligned_cols=111  Identities=12%  Similarity=-0.009  Sum_probs=78.1

Q ss_pred             CCcc--EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCH--HHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhc
Q 005874          101 LGEY--EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRA--EWFVALQGCFRRNVTVVTIYASLGEEALCYSLNE  176 (672)
Q Consensus       101 ~~~~--~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~--e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~  176 (672)
                      .|..  ..+|..++...+..++..+...|+++||++........  ......+++...|++++++.+.. ++.+...|++
T Consensus        87 TG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~  165 (422)
T TIGR02155        87 TGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQD  165 (422)
T ss_pred             CCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHH
Confidence            4443  34677777777777777888889999999887665442  22334667889999999887654 5788899999


Q ss_pred             ccceEEEECccchHHHHhhhc--C----CCCccEEEEecCCC
Q 005874          177 TEVTTVICGSKELKKLVDLSG--Q----LDTVKHVICMDANI  212 (672)
Q Consensus       177 ~~~~~vi~~~~~~~~l~~~~~--~----~~~l~~ii~~~~~~  212 (672)
                      .+++++++.+..+..+.+...  .    ..+++.+++..+..
T Consensus       166 ~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l  207 (422)
T TIGR02155       166 FKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPW  207 (422)
T ss_pred             HCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcC
Confidence            999999999987765554321  1    13567766655543

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=86.38  E-value=9.7  Score=41.20  Aligned_cols=104  Identities=10%  Similarity=0.061  Sum_probs=74.7

Q ss_pred             EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCH--HHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEE
Q 005874          105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRA--EWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTV  182 (672)
Q Consensus       105 ~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~--e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v  182 (672)
                      ..+|.+++...+...+..+...|+.+||++.++.+.+.  ......+|+...|++++|...   .+....++++.+++.+
T Consensus       104 v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l  180 (445)
T TIGR03335       104 FFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGI  180 (445)
T ss_pred             eeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEE
Confidence            46789999988888888888889999999999887654  233455788899999887653   2345678899999999


Q ss_pred             EECccchHHHHhhhc------CCCCccEEEEecCC
Q 005874          183 ICGSKELKKLVDLSG------QLDTVKHVICMDAN  211 (672)
Q Consensus       183 i~~~~~~~~l~~~~~------~~~~l~~ii~~~~~  211 (672)
                      ++.....-.+.+...      ....++.+++..+.
T Consensus       181 ~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~  215 (445)
T TIGR03335       181 VASVFKLLRLARRMKAEGIDPAESSIRRLVVGGES  215 (445)
T ss_pred             EECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCC
Confidence            887765544433211      12467777765544

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=81.46  E-value=17  Score=38.66  Aligned_cols=123  Identities=19%  Similarity=0.147  Sum_probs=86.6

Q ss_pred             cCCCCceEEeeccccccccccCCcccccccCCc--cEEeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCC--HHHH
Q 005874           71 HGDKYLLGTRQLISRETEVADNGRSFEKLHLGE--YEWLTYGQAFETICNFASGLAQL-GHKKEERVAIFADTR--AEWF  145 (672)
Q Consensus        71 ~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~Ty~el~~~a~~la~~L~~~-g~~~g~~V~i~~~ns--~e~~  145 (672)
                      .|+.++++...          .|.      .|.  ...+|++.+...+..+.  +... +++  +++..++|-+  ..++
T Consensus       153 ~~~~~~~i~~T----------SGT------TG~pK~v~~t~~~~~~~~~~~~--~~~~~~~~--d~~l~~~p~~~~~g~~  212 (417)
T PF00501_consen  153 SPDDPAFILFT----------SGT------TGKPKGVVLTHRNLLAQARALA--LPEYFGLG--DRILSFLPLSHIFGLI  212 (417)
T ss_dssp             TTTSEEEEEEE----------SSS------SSSEEEEEEEHHHHHHHHHHHH--HHHTTTTT--TEEEESS-TTSHHHHH
T ss_pred             CccceeEeecc----------ccc------cccccccccccccccccccccc--cccccccC--ceEEeecccccccccc
Confidence            56888887642          444      443  35789999999888877  4332 333  6776666655  4444


Q ss_pred             HHHHHHHhCCcEEEecCCCCC--HHHHHHHHhcccceEEEECccchHHHHhhh--------cCCCCccEEEEecCCCc
Q 005874          146 VALQGCFRRNVTVVTIYASLG--EEALCYSLNETEVTTVICGSKELKKLVDLS--------GQLDTVKHVICMDANIP  213 (672)
Q Consensus       146 ~~~lA~~~~G~~~vpl~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~--------~~~~~l~~ii~~~~~~~  213 (672)
                      ..+++++..|+..+..+....  ++.+...+++.+++.+++.+..+..+.+..        ..++.++.+++..+..+
T Consensus       213 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~  290 (417)
T PF00501_consen  213 SALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLP  290 (417)
T ss_dssp             HHHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-C
T ss_pred             ccccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence            788999999999998886644  677889999999999999998888777632        14667888887666543

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=80.82  E-value=19  Score=39.53  Aligned_cols=103  Identities=13%  Similarity=0.169  Sum_probs=74.2

Q ss_pred             EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCC--HHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEE
Q 005874          105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTR--AEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTV  182 (672)
Q Consensus       105 ~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns--~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v  182 (672)
                      ..+|+..+...+..+...   .++++++++...++-.  ..+...+++++..|+.+++. +...++.+...+++.+++++
T Consensus       184 v~~s~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~  259 (513)
T PRK07656        184 AMLTHRQLLSNAADWAEY---LGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPL-PVFDPDEVFRLIETERITVL  259 (513)
T ss_pred             EEEecHHHHHHHHHHHHh---hCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEec-CcCCHHHHHHHHHHhCCeEE
Confidence            467888887666554433   3788999998887754  33455678999999988875 45678999999999999999


Q ss_pred             EECccchHHHHhhhc----CCCCccEEEEecCC
Q 005874          183 ICGSKELKKLVDLSG----QLDTVKHVICMDAN  211 (672)
Q Consensus       183 i~~~~~~~~l~~~~~----~~~~l~~ii~~~~~  211 (672)
                      +..+..+..+.....    .++.++.++...+.
T Consensus       260 ~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~g~~  292 (513)
T PRK07656        260 PGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAAS  292 (513)
T ss_pred             echHHHHHHHHcCCCcCCCCccceeeEEecCCC
Confidence            999887776665432    23456666554443

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=80.29  E-value=18  Score=38.82  Aligned_cols=102  Identities=12%  Similarity=0.132  Sum_probs=74.0

Q ss_pred             cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCC-HHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEE
Q 005874          104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTR-AEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTV  182 (672)
Q Consensus       104 ~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns-~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v  182 (672)
                      ...+|++.+...+..++..+   +++++|++...++-. ...+..+++++..|++.+..++.   +.+...+++.+++.+
T Consensus       128 ~v~~s~~~~~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~---~~~~~~l~~~~~t~~  201 (436)
T TIGR01923       128 AVPHTFRNHYASAVGSKENL---GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF---NQLLEMIANERVTHI  201 (436)
T ss_pred             EEEEehHHHHHHHHHHHhhc---CCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH---HHHHHHHHHhCCeEE
Confidence            34789998888777666544   789999998887754 22334567888999998887653   488889999999999


Q ss_pred             EECccchHHHHhhhcCCCCccEEEEecCC
Q 005874          183 ICGSKELKKLVDLSGQLDTVKHVICMDAN  211 (672)
Q Consensus       183 i~~~~~~~~l~~~~~~~~~l~~ii~~~~~  211 (672)
                      .+....+..+.+.....+.++.+++..+.
T Consensus       202 ~~~P~~l~~l~~~~~~~~~l~~~~~~G~~  230 (436)
T TIGR01923       202 SLVPTQLNRLLDEGGHNENLRKILLGGSA  230 (436)
T ss_pred             EeHHHHHHHHHhCcCCCCceEEEEECCCC
Confidence            99988777666654444567766664443

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=80.11  E-value=27  Score=38.32  Aligned_cols=103  Identities=12%  Similarity=0.013  Sum_probs=74.6

Q ss_pred             EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCH-HHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEE
Q 005874          105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRA-EWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVI  183 (672)
Q Consensus       105 ~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~-e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi  183 (672)
                      ..+|++.+...+.....   ..++++++++....+... ..+...++++..|++++..+.. +++.+...+++.+++.++
T Consensus       185 v~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~-~~~~~~~~l~~~~~t~l~  260 (521)
T PRK06187        185 VVLSHRNLFLHSLAVCA---WLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRF-DPENLLDLIETERVTFFF  260 (521)
T ss_pred             EEeehHHHHHHHHHHHH---hhCCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEecCCC-CHHHHHHHHHHhCCeEEE
Confidence            46788888876666555   448899999988887553 2234445588889998877665 889999999999999999


Q ss_pred             ECccchHHHHhhhc----CCCCccEEEEecCC
Q 005874          184 CGSKELKKLVDLSG----QLDTVKHVICMDAN  211 (672)
Q Consensus       184 ~~~~~~~~l~~~~~----~~~~l~~ii~~~~~  211 (672)
                      +.+..+..+.+...    .++.++.+++..+.
T Consensus       261 ~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~  292 (521)
T PRK06187        261 AVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAA  292 (521)
T ss_pred             chHHHHHHHHcCcCCCccCcchhhEEEEcCcC
Confidence            99887776655432    33566666654443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	672
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		5e-21
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		1e-19
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		1e-17
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		3e-15
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		3e-15
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		3e-15
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		5e-15
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		9e-15
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		9e-15
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-14
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		1e-14
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		8e-14
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		1e-12
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		2e-13
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		5e-13
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		2e-13
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		3e-13
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		3e-13
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		3e-13
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		6e-13
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		1e-12
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		1e-11
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		7e-10
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		8e-10
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		8e-10
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		8e-10
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		8e-10
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		8e-10
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		9e-10
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		9e-10
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		4e-09
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		5e-09
3fcc_A	512	Crystal Structure Of Dlta Protein In Complex With A		9e-09
3dhv_A	512	Crystal Structure Of Dlta Protein In Complex With D		9e-09
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		2e-08
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		7e-08
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		8e-08
4gr5_A	570	Crystal Structure Of Slgn1deltaasub In Complex With		1e-07
1ry2_A	663	Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe		3e-07
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		4e-07
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		2e-06
3l8c_A	521	Structure Of Probable D-Alanine--Poly(Phosphoribito		6e-07
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		1e-06
3t5a_A	480	Crystal Structure Of N-Terminal Domain Of Faal28 G3		1e-06
3e7w_A	511	Crystal Structure Of Dlta: Implications For The Rea		2e-06
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		3e-06
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		5e-06
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		1e-05
3e53_A	480	Crystal Structure Of N-Terminal Domain Of A Fatty A		8e-05
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		3e-04
3vnq_A	544	Co-crystal Structure Of Nrps Adenylation Protein Cy		3e-04

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 99.4 bits (246), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 125/491 (25%), Positives = 206/491 (41%), Gaps = 82/491 (16%)
Query: 113 FETICN----FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEE 168
           F  IC      ASG+++ G +K E V +      ++   +   +R   T V I       
Sbjct: 55  FLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSF 114
Query: 169 ALCYSLNETEVTTVICGS---KELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRW 225
            L + LN++E TT++  S   +  K +++ +G    V+ V  +   + +++S V  SG  
Sbjct: 115 ELEHILNDSEATTLVVHSXLYENFKPVLEKTG----VERVFVVGGEV-NSLSEVXDSGS- 168
Query: 226 KITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI 285
               F +V++    NP +       DVA+I YT G+TG PKGV +TH N LA  +  + +
Sbjct: 169 --EDFENVKV----NPEE-------DVALIPYTGGTTGXPKGVXLTHFN-LAANALQLAV 214
Query: 286 VPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASV 345
              L   D  +   P  H  E    NL   VG+             +  I+K        
Sbjct: 215 ATGLSHXDTIVGCXPXFHSAEFGLVNLXVTVGNEYVVXGXFNQEXLAENIEK-------- 266
Query: 346 LRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLL 405
            + T   +VP  L+ + + +          S K +D +Y +  +       GAW +   L
Sbjct: 267 YKGTFSWAVPPALNVLVNTLES--------SNKTYDWSYLKVFAT------GAWPVAPAL 312
Query: 406 WNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFS- 464
              L+          R+R                          Q +G TE C   T + 
Sbjct: 313 VEKLLKLAAEKCNNPRLRH------------------------NQIWGXTEACPXVTTNP 348
Query: 465 --EVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEK 522
              +D S+    G P     +K+I   +G  L        GEIVI GPN+  GY+K E++
Sbjct: 349 PLRLDKSTTQ--GVPXSDIELKVISLEDGRELGVGE---SGEIVIRGPNIFKGYWKREKE 403
Query: 523 TKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSP 582
            +E +  D+KG ++F TGDVG +  +G L   DR K+++K + G  ++  ++EA L    
Sbjct: 404 NQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYK-GYTIAPFELEALLXKHE 462
Query: 583 YVDNIMMHADP 593
            V ++ +   P
Sbjct: 463 AVXDVAVIGKP 473

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 134/536 (25%), Positives = 210/536 (39%), Gaps = 99/536 (18%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           +TY Q        A  L  LG  K +RVA+      E+     G  +     V I   L 
Sbjct: 44  MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 103
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLD---TVKHVICMDANIPSAVSSVEQSG 223
              + + L+++    VI G+     +  +  Q D   TV   I  D        S+ +  
Sbjct: 104 APEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGAD--------SLAERL 155
Query: 224 RWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVM 283
           R        V+  G +N              IMYTSG+TG PKGV+ TH +V +  S+  
Sbjct: 156 RSAAADEPAVECGGDDN------------LFIMYTSGTTGHPKGVVHTHESVHSAASSWA 203
Query: 284 TIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDA 343
           + + D+  +D  L  LP+ HV  L      A  G  +        T   S I +      
Sbjct: 204 STI-DVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEE----- 257
Query: 344 SVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEK 403
              R  +  +VPAIL+ +R               ++ + A    L A +  +F       
Sbjct: 258 ---RVCIGGAVPAILNFMR---------------QVPEFA---ELDAPDFRYF------- 289
Query: 404 LLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIG--QGYGLTETCAGG 461
                                 ++GGAP+    +  I I     I   QGY LTE+C GG
Sbjct: 290 ----------------------ITGGAPMP---EALIKIYAAKNIEVVQGYALTESCGGG 324
Query: 462 TFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEE 521
           T    +D+      A     F  +    + G +        GE+VI    +   Y+   E
Sbjct: 325 TLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG---EGEVVIKSDILLKEYWNRPE 381
Query: 522 KTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVS 581
            T++ +   D G  WF TGD+G++  +G L I DR KD++ +  GE V   ++E+ +I  
Sbjct: 382 ATRDAF---DNG--WFRTGDIGEIDDEGYLYIKDRLKDMI-ISGGENVYPAEIESVIIGV 435
Query: 582 PYVDNIMMHADPFHSY---CVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKI 634
           P V  + +   P   +     A+VVA Q  V E   +Q +     RL ++++P K+
Sbjct: 436 PGVSEVAVIGLPDEKWGEIAAAIVVADQNEVSE---QQIVEYCGTRLARYKLPKKV 488

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 180/426 (42%), Gaps = 92/426 (21%)
Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLEL-VA 309
           D+A I+YTSG+TG  KG  ++H N LA+ S  +         DV +  LP+ H   L VA
Sbjct: 156 DLAAILYTSGTTGRSKGAXLSHDN-LASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 310 ENL-IAGVGSAIGYGT--PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVR 366
            N+ +   GS I      P  + D  +             R TV+  VP    R+    R
Sbjct: 215 SNVTLFARGSXIFLPKFDPDKILDLXA-------------RATVLXGVPTFYTRLLQSPR 261
Query: 367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFIL 426
              +  G    +LF          I+GS                                
Sbjct: 262 LTKETTG--HXRLF----------ISGS-------------------------------- 277
Query: 427 SGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLI 486
              APL ADT R  +   G  + + YG TET    +     D   G VG  LP    ++ 
Sbjct: 278 ---APLLADTHREWSAKTGHAVLERYGXTETNXNTSNPYDGDRVPGAVGPALPGVSARVT 334
Query: 487 DWPEGGYLTSDSPMPRGE---IVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVG 543
           D PE G       +PRG+   I + GPNV  GY++  EKTK  ++ D     +F TGD+G
Sbjct: 335 D-PETG-----KELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDG----FFITGDLG 384
Query: 544 QVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSP-YVDNIMM---HADPFHSYCV 599
           ++   G + I+ R KD+V +  G  V   ++E+ +   P  V++ ++   HAD F     
Sbjct: 385 KIDERGYVHILGRGKDLV-ITGGFNVYPKEIESEIDAXPGVVESAVIGVPHAD-FGEGVT 442
Query: 600 ALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAI 659
           A+VV  + A  + A  Q + G + +L KF+ P K+  +     +  G      K+++  +
Sbjct: 443 AVVVRDKGATIDEA--QVLHGLDGQLAKFKXPKKVIFVDDLPRNTXG------KVQKNVL 494
Query: 660 RKAFAD 665
           R+ + D
Sbjct: 495 RETYKD 500

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 107/395 (27%), Positives = 161/395 (40%), Gaps = 86/395 (21%)
Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLEL-VA 309
           D+A I+YTSG+TG   G M++H N LA+ S  +         DV +  LP+ H   L VA
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDN-LASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 310 ENL-IAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKK 368
            N+ +   GS I     L   D    +         + R TV+  VP    R+    R  
Sbjct: 215 SNVTLFARGSMIF----LPXFDPDXILDL-------MARATVLMGVPTFYTRLLQSPRLT 263
Query: 369 VDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSG 428
            +  G                                                +R  +SG
Sbjct: 264 XETTG-----------------------------------------------HMRLFISG 276
Query: 429 GAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDW 488
            APL ADT R  +   G  + + YG+TET    +     D   G VG  LP    ++ D 
Sbjct: 277 SAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD- 335
Query: 489 PEGGYLTSDSPMPRGE---IVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQV 545
           PE G       +PRG+   I + GPNV  GY++  E T   ++  D G  +F TGD+G +
Sbjct: 336 PETG-----XELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFR--DDG--FFITGDLGXI 386
Query: 546 HADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSP-YVDNIMM---HADPFHSYCVAL 601
              G + I+ R  D+V +  G  V   ++E+ +   P  V++ ++   HAD F     A 
Sbjct: 387 DERGYVHILGRGXDLV-ITGGFNVYPXEIESEIDAMPGVVESAVIGVPHAD-FGEGVTAF 444
Query: 602 VVASQPAVEEWAAKQGIV--GKNARLDKFEIPAKI 634
           VV  +    E+A  +  V  G + +L  F +P  +
Sbjct: 445 VVLXR----EFAPSEAQVLHGLDGQLAXFXMPXXV 475

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 157/399 (39%), Gaps = 94/399 (23%)
Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLEL-VA 309
           D+A I+YTSG+TG   G M++H N LA+ S  +         DV +  LP+ H   L VA
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDN-LASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 310 ENL-IAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKK 368
            N+ +   GS I     L   D    +         + R TV+  VP    R+    R  
Sbjct: 215 SNVTLFARGSMIF----LPXFDPDXILDL-------MARATVLMGVPTFYTRLLQSPRLT 263
Query: 369 VDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSG 428
            +  G                                                +R  +SG
Sbjct: 264 XETTG-----------------------------------------------HMRLFISG 276
Query: 429 GAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDW 488
            APL ADT R  +   G  + + YG+TET    +     D   G VG  LP    ++ D 
Sbjct: 277 SAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD- 335
Query: 489 PEGGYLTSDSPMPRGE---IVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQV 545
           PE G       +PRG+   I + GPNV  GY++  E T   ++  D G  +F TGD+G +
Sbjct: 336 PETG-----XELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFR--DDG--FFITGDLGXI 386
Query: 546 HADGCLEIIDRKKDIV----------KLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH 595
              G + I+ R  D+V          +++       G VE+A+I  P+ D        F 
Sbjct: 387 DERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHAD--------FG 438
Query: 596 SYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKI 634
               A+VV    A  + A  Q + G + +L  F +P  +
Sbjct: 439 EGVTAVVVRDXGATIDEA--QVLHGLDGQLAXFXMPXXV 475

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 158/393 (40%), Gaps = 79/393 (20%)
Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLEL-VA 309
           D+A I+YTSG+TG   G M++H N LA+ S  +         DV +  LP+ H   L VA
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDN-LASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 310 ENL-IAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKK 368
            N+ +   GS I     L   D    +         + R TV+  VP    R+    R  
Sbjct: 215 SNVTLFARGSMIF----LPXFDPDXILDL-------MARATVLMGVPTFYTRLLQSPRLT 263
Query: 369 VDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSG 428
            +  G                                                +R  +SG
Sbjct: 264 XETTG-----------------------------------------------HMRLFISG 276
Query: 429 GAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDW 488
            APL ADT R  +   G  + + YG+TET    +     D   G VG  LP    ++ D 
Sbjct: 277 SAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD- 335
Query: 489 PEGGYLTSDSPMPRGE---IVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQV 545
           PE G       +PRG+   I + GPNV  GY++  E T   ++  D G  +F TGD+G +
Sbjct: 336 PETG-----XELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFR--DDG--FFITGDLGXI 386
Query: 546 HADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSP-YVDNIMM---HADPFHSYCVAL 601
              G + I+ R  D+V +  G  V   ++E+ +   P  V++ ++   HAD        +
Sbjct: 387 DERGYVHILGRGXDLV-ITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAFV 445
Query: 602 VVASQPAVEEWAAKQGIVGKNARLDKFEIPAKI 634
           V+  + A  E  A++       RL  F +P  +
Sbjct: 446 VLXREFAPSEILAEELXAFVXDRLAXFXMPXXV 478

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 108/472 (22%), Positives = 167/472 (35%), Gaps = 72/472 (15%)
Query: 108 TYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGE 167
           TYG+  E    FAS L  LG   EER+ +         VA  G     V  V     L  
Sbjct: 50  TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109
Query: 168 EALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKI 227
               Y L  +    VI     ++   +++  L++ +H  C        + S  +    ++
Sbjct: 110 ADYVYMLTHSHARAVIASGALVQ---NVTQALESAEHDGC------QLIVSQPRESEPRL 160
Query: 228 TSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP 287
               +  I        A      D+A  +Y+SGSTG PKG + TH N+  T       + 
Sbjct: 161 APLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL 220
Query: 288 DLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLR 347
            +   DV  +           A  L    G   G   PL++  T+  + +    DA   R
Sbjct: 221 GIAENDVVFS-----------AAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFAR 269
Query: 348 PTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWN 407
             ++   P +                                         +G+  L  N
Sbjct: 270 --LVEHRPTVF----------------------------------------YGVPTLYAN 287
Query: 408 LLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVD 467
           +LV   + A     IR   S G  L  +         G  I  G G TE       +   
Sbjct: 288 MLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAG 347
Query: 468 DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVY 527
               G  G P+P   I+L D  E G+   D  +  G++ I GP+  V Y+ N EK++  +
Sbjct: 348 AVEYGTTGRPVPGYEIELRD--EAGHAVPDGEV--GDLYIKGPSAAVMYWNNREKSRATF 403
Query: 528 KVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALI 579
             +     W  +GD      +GC     R  D++K+  G+YVS  +VE  L+
Sbjct: 404 LGE-----WIRSGDKYCRLPNGCYVYAGRSDDMLKVS-GQYVSPVEVEMVLV 449

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 9/161 (5%)
Query: 425 ILSGGAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFI 483
           I SGGAPLS +    +      P + QGYGLTET +    +   D   G  G  +P    
Sbjct: 314 IASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKA 373
Query: 484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVG 543
           K+ID      L    P  RGE+ + GP +  GY  N E TKE+  +D++G  W +TGD+G
Sbjct: 374 KVIDLDTKKSL---GPNRRGEVCVKGPMLMKGYVNNPEATKEL--IDEEG--WLHTGDIG 426
Query: 544 QVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
               +    I+DR K ++K + G  V   ++E+ L+  P +
Sbjct: 427 YYDEEKHFFIVDRLKSLIKYK-GYQVPPAELESVLLQHPSI 466

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 9/161 (5%)
Query: 425 ILSGGAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFI 483
           I SGGAPLS +    +      P + QGYGLTET +    +   D   G  G  +P    
Sbjct: 314 IASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKA 373
Query: 484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVG 543
           K+ID      L    P  RGE+ + GP +  GY  N E TKE+  +D++G  W +TGD+G
Sbjct: 374 KVIDLDTKKSL---GPNRRGEVCVKGPMLMKGYVNNPEATKEL--IDEEG--WLHTGDIG 426
Query: 544 QVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
               +    I+DR K ++K + G  V   ++E+ L+  P +
Sbjct: 427 YYDEEKHFFIVDRLKSLIKYK-GYQVPPAELESVLLQHPSI 466

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 9/161 (5%)
Query: 425 ILSGGAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFI 483
           I SGGAPLS +    +      P + QGYGLTET +    +   D   G  G  +P    
Sbjct: 314 IASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKA 373
Query: 484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVG 543
           K+ID      L    P  RGE+ + GP +  GY  N E TKE+  +D++G  W +TGD+G
Sbjct: 374 KVIDLDTKKSL---GPNRRGEVCVKGPMLMKGYVNNPEATKEL--IDEEG--WLHTGDIG 426
Query: 544 QVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
               +    I+DR K ++K + G  V   ++E+ L+  P +
Sbjct: 427 YYDEEKHFFIVDRLKSLIKYK-GYQVPPAELESVLLQHPSI 466

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 132/545 (24%), Positives = 216/545 (39%), Gaps = 103/545 (18%)
Query: 108 TYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGE 167
           TY          A+   +LG  + + V +      E+ ++      R  T          
Sbjct: 90  TYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTP 149
Query: 168 EALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKI 227
             +      +    +I  ++ + K+  L      V  ++C+D N    +      G  + 
Sbjct: 150 AEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVV--IVCIDDNESVPIPE----GCLRF 203
Query: 228 TSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVS-AVMTIV 286
           T          E  +D+      DV  + Y+SG+TGLPKGVM+TH  ++ +V+  V    
Sbjct: 204 TELTQSTTEASEV-IDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN 262
Query: 287 PDL--GSKDVYLAYLPLAHVLELVAENLIA-GVGSAIGYGTPLTLTDTSSKIKKGTQGDA 343
           P+L   S DV L  LP+ H+  L +  L    VG+AI       +      I++     A
Sbjct: 263 PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVA 322
Query: 344 SVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEK 403
            ++ P V+A                  AK   ++K +DL+  R                 
Sbjct: 323 PMVPPIVLAI-----------------AKSSETEK-YDLSSIR----------------- 347
Query: 404 LLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQGYGLTETCAGGT 462
                                + SG APL  + +  +N     A +GQGYG+TE  AG  
Sbjct: 348 --------------------VVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTE--AGPV 385
Query: 463 FSEVDDSSVGRVGAPLP-----CSFI------KLIDWPEGGYLTSDSPMPRGEIVIAGPN 511
            +     S+G    P P     C  +      K++D   G  L+ + P   GEI I G  
Sbjct: 386 LA----MSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQP---GEICIRGHQ 438
Query: 512 VTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSL 571
           +  GY  N   T E   +D  G  W +TGD+G +  D  L I+DR K+++K + G  V+ 
Sbjct: 439 IMKGYLNNPAATAET--IDKDG--WLHTGDIGLIDDDDELFIVDRLKELIKYK-GFQVAP 493
Query: 572 GKVEAALIVSPYVDN---IMMHADPFHSYCVALVVASQPA------VEEWAAKQGIVGKN 622
            ++EA LI  P + +   + M  +      VA VV S+ +      V+++ +KQ +  K 
Sbjct: 494 AELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYK- 552
Query: 623 ARLDK 627
            R++K
Sbjct: 553 -RINK 556

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 95/208 (45%), Gaps = 24/208 (11%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           +TY + FE  C  A  + + G   +  +A+ ++   ++F+ + G     V V        
Sbjct: 85  ITYSEYFEMACRLAETMKRYGLGLQHHIAVCSENSLQFFMPVCGALFIGVGVAPTNDIYN 144
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
           E  L  SL+ ++ T V C  + L+K++ +  +L  ++ ++ +D       S  +  G+  
Sbjct: 145 ERELYNSLSISQPTIVFCSKRALQKILGVQKKLPIIQKIVILD-------SREDYMGKQS 197
Query: 227 ITSFADVQILGRENPVDADY-PVSAD----VAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281
           + SF +  +    N  + DY P S D     A+IM +SGSTGLPKGV +TH N+    S 
Sbjct: 198 MYSFIESHLPAGFN--EYDYIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVRFSH 255
Query: 282 VM------TIVPDLGSKDVYLAYLPLAH 303
                    I+PD       L  +P  H
Sbjct: 256 CRDPVFGNQIIPD----TAILTVIPFHH 279

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 79/162 (48%), Gaps = 10/162 (6%)
Query: 425 ILSGGAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLPCSF 482
           I SGGAPL+ +    +      P I QGYGLTET +    +    D   G  G  +P   
Sbjct: 346 IASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPRGRDDKPGACGKVVPFFS 405
Query: 483 IKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDV 542
            K++D   G  L  +    RGE+ + GP +  GY  N E T  +  +D  G  W ++GD+
Sbjct: 406 AKIVDLDTGKTLGVNQ---RGELCVKGPMIMKGYVNNPEATSAL--IDKDG--WLHSGDI 458
Query: 543 GQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
                DG   I+DR K ++K + G  V   ++E+ L+  P++
Sbjct: 459 AYYDKDGYFFIVDRLKSLIKYK-GYQVPPAELESILLQHPFI 499

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 27/200 (13%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           +TY + FE     A  + + G     R+ + ++   ++F+ + G     V V        
Sbjct: 56  ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYN 115
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
           E  L  S+N ++ T V    K L+K++++  +L  ++ +I MD       S  +  G   
Sbjct: 116 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMD-------SKTDYQGFQS 168
Query: 227 ITSFADVQILGRENPVDADYPVSAD----VAVIMYTSGSTGLPKGVMMTH---------- 272
           + +F    +    N  D   P S D    +A+IM +SGSTGLPKGV + H          
Sbjct: 169 MYTFVTSHLPPGFNEYDF-VPESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSHA 227
Query: 273 -----GNVLATVSAVMTIVP 287
                GN +A  +A++++VP
Sbjct: 228 RDPIFGNQIAPDTAILSVVP 247

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 79/161 (49%), Gaps = 9/161 (5%)
Query: 425 ILSGGAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFI 483
           I SGGAPLS +    +      P I QGYGLTET +    +   D   G VG  +P    
Sbjct: 317 IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPKGDDKPGAVGKVVPFFEA 376
Query: 484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVG 543
           K++D   G  L  +    RGE+ + GP +  GY  N E T  +  +D  G  W ++GD+ 
Sbjct: 377 KVVDLDTGKTLGVNQ---RGELSVRGPMIMSGYVNNPEATNAL--IDKDG--WLHSGDIA 429
Query: 544 QVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
               D    I+DR K ++K + G  V+  ++E+ L+  P +
Sbjct: 430 YWDEDEHFFIVDRLKSLIKYK-GCQVAPAELESILLQHPNI 469

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 126/532 (23%), Positives = 209/532 (39%), Gaps = 89/532 (16%)
Query: 108 TYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGE 167
           TY     T    ASGL ++G ++ + + +F  +  E+ +A  G   R   +         
Sbjct: 51  TYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTP 110
Query: 168 EALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKI 227
             L      +    +I  +   +K+ D + + D    V+C+D       S+ +    +  
Sbjct: 111 AELAKHAKASRAKLLITQACYYEKVKDFARESDV--KVMCVD-------SAPDGCLHFSE 161
Query: 228 TSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVS-AVMTIV 286
            + AD      EN          DV  + Y+SG+TGLPKGVM+TH  ++ +V+  V    
Sbjct: 162 LTQAD------ENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDN 215
Query: 287 PDL--GSKDVYLAYLPLAHVLELVAENLIA-GVGSAIGYGTPLTLTDTSSKIKKGTQGDA 343
           P+L   S+DV L  LP+ H+  L +  L    VG+ I       +      I+K     A
Sbjct: 216 PNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIA 275
Query: 344 SVLRPTVM--ASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGL 401
            V+ P +M  A  P +       +R        L K+L D   A+   A  G  +G    
Sbjct: 276 PVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEA 335
Query: 402 EKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGG 461
             +L   L F+K                                                
Sbjct: 336 GPVLAMCLAFAK------------------------------------------------ 347
Query: 462 TFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEE 521
              E  D   G  G  +  + +K++D   G  L  + P   GEI I G  +  GY  + E
Sbjct: 348 ---EPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQP---GEICIRGDQIMKGYLNDPE 401
Query: 522 KTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVS 581
            T     +D +G  W +TGD+G +  D  L I+DR K+++K + G  V+  ++EA LI  
Sbjct: 402 ATSRT--IDKEG--WLHTGDIGYIDDDDELFIVDRLKELIKYK-GFQVAPAELEALLIAH 456
Query: 582 PYVDN---IMMHADPFHSYCVALVVASQPA------VEEWAAKQGIVGKNAR 624
           P + +   + +  +      VA VV S+ +      ++++ +KQ I  K  +
Sbjct: 457 PEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIK 508

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 79/161 (49%), Gaps = 9/161 (5%)
Query: 425 ILSGGAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFI 483
           I SGGAPLS +    +      P I QGYGLTET +    +   D   G VG  +P    
Sbjct: 312 IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEA 371
Query: 484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVG 543
           K++D   G  L  +    RGE+ + GP +  GY  N E T  +  +D  G  W ++GD+ 
Sbjct: 372 KVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNAL--IDKDG--WLHSGDIA 424
Query: 544 QVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
               D    I+DR K ++K + G  V+  ++E+ L+  P +
Sbjct: 425 YWDEDEHFFIVDRLKSLIKYK-GYQVAPAELESILLQHPNI 464

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 79/161 (49%), Gaps = 9/161 (5%)
Query: 425 ILSGGAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFI 483
           I SGGAPLS +    +      P I QGYGLTET +    +   D   G VG  +P    
Sbjct: 312 IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEA 371
Query: 484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVG 543
           K++D   G  L  +    RGE+ + GP +  GY  N E T  +  +D  G  W ++GD+ 
Sbjct: 372 KVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNAL--IDKDG--WLHSGDIA 424
Query: 544 QVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
               D    I+DR K ++K + G  V+  ++E+ L+  P +
Sbjct: 425 YWDEDEHFFIVDRLKSLIKYK-GYQVAPAELESILLQHPNI 464

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 79/161 (49%), Gaps = 9/161 (5%)
Query: 425 ILSGGAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFI 483
           I SGGAPLS +    +      P I QGYGLTET +    +   D   G VG  +P    
Sbjct: 317 IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEA 376
Query: 484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVG 543
           K++D   G  L  +    RGE+ + GP +  GY  N E T  +  +D  G  W ++GD+ 
Sbjct: 377 KVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNAL--IDKDG--WLHSGDIA 429
Query: 544 QVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
               D    I+DR K ++K + G  V+  ++E+ L+  P +
Sbjct: 430 YWDEDEHFFIVDRLKSLIKYK-GYQVAPAELESILLQHPNI 469

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 103/416 (24%), Positives = 165/416 (39%), Gaps = 83/416 (19%)
Query: 184 CGSKELKKLVDLSGQLDTVKHVICM--DANIPSAVSSVEQSGRWKITSFADVQILGRENP 241
            G KEL  ++      D+   ++    DA +P A+ ++E+          DV +  R   
Sbjct: 102 SGDKELAHILS-----DSAPSLVLAPPDAELPPALGALER---------VDVDVRAR-GA 146
Query: 242 VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPL 301
           V  D     D A+++YTSG+TG PKG ++     LAT    +        +DV +  LPL
Sbjct: 147 VPEDGADDGDPALVVYTSGTTGPPKGAVIPR-RALATTLDALADAWQWTGEDVLVQGLPL 205
Query: 302 AHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKK-GTQGDASVLR--PTVMASVPAIL 358
            HV  LV           +G   PL    +   + +  T+G A  L    T++  VP + 
Sbjct: 206 FHVHGLV-----------LGILGPLRRGGSVRHLGRFSTEGAARELNDGATMLFGVPTMY 254
Query: 359 DRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAIL 418
            R+ +     + A   L+K    LA AR                                
Sbjct: 255 HRIAE----TLPADPELAKA---LAGAR-------------------------------- 275
Query: 419 GGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPL 478
                 ++SG A L       I    G  + + YG+TET    +     +   G VG PL
Sbjct: 276 -----LLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPL 330
Query: 479 PCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFY 538
           P   ++L++  +G  + +      GEI + GPN+   Y    + T   +  D     +F 
Sbjct: 331 PGVELRLVEE-DGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDG----FFR 385
Query: 539 TGDVGQVHADGCLEIIDRK-KDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADP 593
           TGD+     DG + I+ RK  D++K   G  +  G++E AL+  P V    +  +P
Sbjct: 386 TGDMAVRDPDGYVRIVGRKATDLIK-SGGYKIGAGEIENALLEHPEVREAAVTGEP 440

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 106/262 (40%), Gaps = 37/262 (14%)
Query: 45  RFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEY 104
           R  +  ST  +    L +  E++        L G ++++SR             LH GE 
Sbjct: 5   RMNAFPSTMMDEELNLWDFLERAAA------LFGRKEVVSR-------------LHTGEV 45
Query: 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYAS 164
              TY + ++       GL  LG    +RVA           A          + T    
Sbjct: 46  HRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPR 105
Query: 165 LGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGR 224
           L  + + Y LN  E   ++     L  +  + G+L TV+H + MD   P    + E++  
Sbjct: 106 LSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEA-- 163
Query: 225 WKITSFADVQILGRE-NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTH-GNVLATVSAV 282
                      LG E +PV      +  +A   YT+G+TGLPKGV+ +H   VL +++A 
Sbjct: 164 -----------LGEEADPVRVPERAACGMA---YTTGTTGLPKGVVYSHRALVLHSLAAS 209
Query: 283 MTIVPDLGSKDVYLAYLPLAHV 304
           +     L  KDV L  +P+ HV
Sbjct: 210 LVDGTALSEKDVVLPVVPMFHV 231

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 98/210 (46%), Gaps = 35/210 (16%)
Query: 423 RFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAG----------GTFSEVDDSSV- 471
           R ++ G A   +   RF    +G  + QGYGLTET              + SE +  ++ 
Sbjct: 297 RLVVGGSAAPRSLIARFER--MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLK 354
Query: 472 GRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR-----GEIVIAGPNVTVGYFKNEEKTKEV 526
            + G P+P   +++ D           P+P+     GE+ + GP +T GY+ NEE T+  
Sbjct: 355 AKTGLPIPLVRLRVAD-------EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSA 407
Query: 527 YKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDN 586
              D     +F TGD+     +G +EI DR KD++K   GE++S   +E AL+  P V  
Sbjct: 408 LTPDG----FFRTGDIAVWDEEGYVEIKDRLKDLIK-SGGEWISSVDLENALMGHPKVKE 462
Query: 587 IMMHADP---FHSYCVALVV--ASQPAVEE 611
             + A P   +    +A+VV    +P  EE
Sbjct: 463 AAVVAIPHPKWQERPLAVVVPRGEKPTPEE 492

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 115/279 (41%), Gaps = 48/279 (17%)
Query: 37  PGHALRNCRFTS-LVSTSWEGISTL---AELFEQSCKEHGDKYLLGTRQLISRETEVADN 92
           P   ++N  F    VS  W    TL   A   ++  +E+GD+  +           + + 
Sbjct: 51  PYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAI-----------IWEG 99
Query: 93  GRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCF 152
             + +  H+      +Y +    +C FA+ L  LG KK + VAI+     E  VA+  C 
Sbjct: 100 DDTSQSKHI------SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACA 153
Query: 153 RRNVTVVTIYASLGEEALCYSLNETEVTTVICG--------SKELKKLVD---LSGQLDT 201
           R       I+     EA+   + ++    VI          S  LKK VD    +  + +
Sbjct: 154 RIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTS 213
Query: 202 VKHVICMDANIPSAVSSVE-QSGR---WKITSFADVQILGRENPVDADYPVSA-DVAVIM 256
           V+HVI +        S ++ Q GR   W+        ++ + +P      ++A D   I+
Sbjct: 214 VEHVIVLK----RTGSDIDWQEGRDLWWR-------DLIEKASPEHQPEAMNAEDPLFIL 262
Query: 257 YTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295
           YTSGSTG PKGV+ T G  L   +     V D    D+Y
Sbjct: 263 YTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIY 301

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 115/279 (41%), Gaps = 48/279 (17%)
Query: 37  PGHALRNCRFTS-LVSTSWEGISTL---AELFEQSCKEHGDKYLLGTRQLISRETEVADN 92
           P   ++N  F    VS  W    TL   A   ++  +E+GD+  +           + + 
Sbjct: 51  PYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAI-----------IWEG 99
Query: 93  GRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCF 152
             + +  H+      +Y +    +C FA+ L  LG KK + VAI+     E  VA+  C 
Sbjct: 100 DDTSQSKHI------SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACA 153
Query: 153 RRNVTVVTIYASLGEEALCYSLNETEVTTVICG--------SKELKKLVD---LSGQLDT 201
           R       I+     EA+   + ++    VI          S  LKK VD    +  + +
Sbjct: 154 RIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTS 213
Query: 202 VKHVICMDANIPSAVSSVE-QSGR---WKITSFADVQILGRENPVDADYPVSA-DVAVIM 256
           V+HVI +        S ++ Q GR   W+        ++ + +P      ++A D   I+
Sbjct: 214 VEHVIVLK----RTGSDIDWQEGRDLWWR-------DLIEKASPEHQPEAMNAEDPLFIL 262
Query: 257 YTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295
           YTSGSTG PKGV+ T G  L   +     V D    D+Y
Sbjct: 263 YTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIY 301

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 115/279 (41%), Gaps = 48/279 (17%)
Query: 37  PGHALRNCRFTS-LVSTSWEGISTL---AELFEQSCKEHGDKYLLGTRQLISRETEVADN 92
           P   ++N  F    VS  W    TL   A   ++  +E+GD+  +           + + 
Sbjct: 51  PYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAI-----------IWEG 99
Query: 93  GRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCF 152
             + +  H+      +Y +    +C FA+ L  LG KK + VAI+     E  VA+  C 
Sbjct: 100 DDTSQSKHI------SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACA 153
Query: 153 RRNVTVVTIYASLGEEALCYSLNETEVTTVICG--------SKELKKLVD---LSGQLDT 201
           R       I+     EA+   + ++    VI          S  LKK VD    +  + +
Sbjct: 154 RIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTS 213
Query: 202 VKHVICMDANIPSAVSSVE-QSGR---WKITSFADVQILGRENPVDADYPVSA-DVAVIM 256
           V+HVI +        S ++ Q GR   W+        ++ + +P      ++A D   I+
Sbjct: 214 VEHVIVLK----RTGSDIDWQEGRDLWWR-------DLIEKASPEHQPEAMNAEDPLFIL 262
Query: 257 YTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295
           YTSGSTG PKGV+ T G  L   +     V D    D+Y
Sbjct: 263 YTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIY 301

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 115/279 (41%), Gaps = 48/279 (17%)
Query: 37  PGHALRNCRFTS-LVSTSWEGISTL---AELFEQSCKEHGDKYLLGTRQLISRETEVADN 92
           P   ++N  F    VS  W    TL   A   ++  +E+GD+  +           + + 
Sbjct: 51  PYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAI-----------IWEG 99
Query: 93  GRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCF 152
             + +  H+      +Y +    +C FA+ L  LG KK + VAI+     E  VA+  C 
Sbjct: 100 DDTSQSKHI------SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACA 153
Query: 153 RRNVTVVTIYASLGEEALCYSLNETEVTTVICG--------SKELKKLVD---LSGQLDT 201
           R       I+     EA+   + ++    VI          S  LKK VD    +  + +
Sbjct: 154 RIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTS 213
Query: 202 VKHVICMDANIPSAVSSVE-QSGR---WKITSFADVQILGRENPVDADYPVSA-DVAVIM 256
           V+HVI +        S ++ Q GR   W+        ++ + +P      ++A D   I+
Sbjct: 214 VEHVIVLK----RTGSDIDWQEGRDLWWR-------DLIEKASPEHQPEAMNAEDPLFIL 262
Query: 257 YTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295
           YTSGSTG PKGV+ T G  L   +     V D    D+Y
Sbjct: 263 YTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIY 301

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 115/279 (41%), Gaps = 48/279 (17%)
Query: 37  PGHALRNCRFTS-LVSTSWEGISTL---AELFEQSCKEHGDKYLLGTRQLISRETEVADN 92
           P   ++N  F    VS  W    TL   A   ++  +E+GD+  +           + + 
Sbjct: 51  PYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAI-----------IWEG 99
Query: 93  GRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCF 152
             + +  H+      +Y +    +C FA+ L  LG KK + VAI+     E  VA+  C 
Sbjct: 100 DDTSQSKHI------SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACA 153
Query: 153 RRNVTVVTIYASLGEEALCYSLNETEVTTVICG--------SKELKKLVD---LSGQLDT 201
           R       I+     EA+   + ++    VI          S  LKK VD    +  + +
Sbjct: 154 RIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGASIPLKKNVDDALKNPNVTS 213
Query: 202 VKHVICMDANIPSAVSSVE-QSGR---WKITSFADVQILGRENPVDADYPVSA-DVAVIM 256
           V+HVI +        S ++ Q GR   W+        ++ + +P      ++A D   I+
Sbjct: 214 VEHVIVLK----RTGSDIDWQEGRDLWWR-------DLIEKASPEHQPEAMNAEDPLFIL 262
Query: 257 YTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295
           YTSGSTG PKGV+ T G  L   +     V D    D+Y
Sbjct: 263 YTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIY 301

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 115/279 (41%), Gaps = 48/279 (17%)
Query: 37  PGHALRNCRFTS-LVSTSWEGISTL---AELFEQSCKEHGDKYLLGTRQLISRETEVADN 92
           P   ++N  F    VS  W    TL   A   ++  +E+GD+  +           + + 
Sbjct: 51  PYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAI-----------IWEG 99
Query: 93  GRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCF 152
             + +  H+      +Y +    +C FA+ L  LG KK + VAI+     E  VA+  C 
Sbjct: 100 DDTSQSKHI------SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACA 153
Query: 153 RRNVTVVTIYASLGEEALCYSLNETEVTTVICG--------SKELKKLVD---LSGQLDT 201
           R       I+     EA+   + ++    VI          S  LKK VD    +  + +
Sbjct: 154 RIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTS 213
Query: 202 VKHVICMDANIPSAVSSVE-QSGR---WKITSFADVQILGRENPVDADYPVSA-DVAVIM 256
           V+HVI +        S ++ Q GR   W+        ++ + +P      ++A D   I+
Sbjct: 214 VEHVIVLK----RTGSDIDWQEGRDLWWR-------DLIEKASPEHQPEAMNAEDPLFIL 262
Query: 257 YTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295
           YTSGSTG PKGV+ T G  L   +     V D    D+Y
Sbjct: 263 YTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIY 301

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 115/279 (41%), Gaps = 48/279 (17%)
Query: 37  PGHALRNCRFTS-LVSTSWEGISTL---AELFEQSCKEHGDKYLLGTRQLISRETEVADN 92
           P   ++N  F    VS  W    TL   A   ++  +E+GD+  +           + + 
Sbjct: 51  PYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAI-----------IWEG 99
Query: 93  GRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCF 152
             + +  H+      +Y +    +C FA+ L  LG KK + VAI+     E  VA+  C 
Sbjct: 100 DDTSQSKHI------SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACA 153
Query: 153 RRNVTVVTIYASLGEEALCYSLNETEVTTVICG--------SKELKKLVD---LSGQLDT 201
           R       I+     EA+   + ++    VI          S  LKK VD    +  + +
Sbjct: 154 RIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTS 213
Query: 202 VKHVICMDANIPSAVSSVE-QSGR---WKITSFADVQILGRENPVDADYPVSA-DVAVIM 256
           V+HVI +        S ++ Q GR   W+        ++ + +P      ++A D   I+
Sbjct: 214 VEHVIVLK----RTGSDIDWQEGRDLWWR-------DLIEKASPEHQPEAMNAEDPLFIL 262
Query: 257 YTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295
           YTSGSTG PKGV+ T G  L   +     V D    D+Y
Sbjct: 263 YTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIY 301

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 82/180 (45%), Gaps = 25/180 (13%)
Query: 437 QRFINICLGAPIGQGYGLTETCAGGTFSEVDD--SSVGRVGAPLPCSFIKLIDWPEGGYL 494
           +RF   C  A     +G +ET    TF+   D   S GR   PL    + ++D       
Sbjct: 287 ERFEATCPNATFWATFGQSETSGLSTFAPYRDRPKSAGR---PLFWRTVAVVD------- 336
Query: 495 TSDSPMPRGE---IVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCL 551
             D P+P GE   IV+ GP V  GY+ N   T+  ++       W +TGD+G+  ADG L
Sbjct: 337 AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-----NGWHHTGDMGRFDADGYL 391
Query: 552 EIIDR--KKDIVKLQHGEYVSLGKVEAALIVSPYVDN--IMMHADPFHSYCVALVVASQP 607
               R  +K+++K   GE V   +VE AL   P + +  ++   DP  S  +  V   +P
Sbjct: 392 FYAGRAPEKELIK-TGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKP 450

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 119/505 (23%), Positives = 201/505 (39%), Gaps = 89/505 (17%)
Query: 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYAS 164
           E  TY Q  +     A+ L   G K  +RV +          A  GC       V IY  
Sbjct: 39  ETXTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPP 98
Query: 165 LGEEALCYS---LNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS-AVSSVE 220
             E+ L  +   +  ++   V+  +  +KK    + +L+T    +     IP+ A+ S+E
Sbjct: 99  AQEKLLDKAQRIVTNSKPVIVLXIADHIKKFT--ADELNTNPKFL----KIPAIALESIE 152
Query: 221 --QSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAT 278
             +S  W+ TS                   S D+A + YTSGST  PKGV ++H N+L  
Sbjct: 153 LNRSSSWQPTSIK-----------------SNDIAFLQYTSGSTXHPKGVXVSHHNLLDN 195
Query: 279 VSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENL--IAGVGSAIGYGTPLTLTDTSSKIK 336
           ++ + T       + +  ++LP  H   L+   L  I G   AI       L +  S +K
Sbjct: 196 LNKIFTSF-HXNDETIIFSWLPPHHDXGLIGCILTPIYGGIQAIXXSPFSFLQNPLSWLK 254
Query: 337 KGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSW- 395
             T+  A++      A     + R+R+  ++ +D    ++   F+ A   R       + 
Sbjct: 255 HITKYKATISGSPNFA-YDYCVKRIREEKKEGLDLSSWVTA--FNGAEPVREETXEHFYQ 311
Query: 396 -FGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGL 454
            F  +G  K  +    +    A L      +++GG P                 G  Y  
Sbjct: 312 AFKEFGFRKEAF-YPCYGLAEATL------LVTGGTP-----------------GSSYK- 346
Query: 455 TETCAGGTFSE-----VDDSSVGR---VGAPLPCSFIKLIDWPEGGYLTSDSPMP----- 501
           T T A   F +      DD+S G    V +  P   +K+ID         D+ +P     
Sbjct: 347 TLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIID--------PDTLIPCDFDQ 398
Query: 502 RGEIVIAGPNVTVGYFKNEEKTKEVY----KVDDKGMRWFYTGDVGQVHADGCLEIIDRK 557
            GEI +   +V  GY+   E+T+  +    K D++   +  TGD+G +H +  L +  R 
Sbjct: 399 VGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENE-LYVTGRI 457
Query: 558 KDIVKLQHGEYVSLGKVEAALIVSP 582
           KD++ + +G+      +E +L  SP
Sbjct: 458 KDLIII-YGKNHYPQDIEFSLXHSP 481

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 113/251 (45%), Gaps = 36/251 (14%)
Query: 422 IRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGT-FSEVDDSSVGRVGAPLPC 480
           ++ +  GGA       R +   L   + Q +G+ E     T   + D+      G P+  
Sbjct: 309 LKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISS 368
Query: 481 S-FIKLIDWPEGGYLTSDSPMPRGEI---VIAGPNVTVGYFKNEEKTKEVYKVDDKGMRW 536
              IK++D            +P GEI      GP    GY+++ E   +V+  D+    +
Sbjct: 369 DDEIKIVD-------EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDN----Y 417
Query: 537 FYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHA----- 591
           +Y+GD+ Q   DG L ++ R KD +  + GE ++  ++E  +++ P V    MHA     
Sbjct: 418 YYSGDLVQRTPDGNLRVVGRIKDQIN-RGGEKIASEEIEKLILLHPEV----MHAALVAI 472
Query: 592 --DPFHSYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVT 649
             + F     A +V+  P ++    ++ ++     + ++++P +IKL+      E+  +T
Sbjct: 473 VDEQFGEKSCAFIVSRNPELKAVVLRRHLM--ELGIAQYKLPDQIKLI------ESLPLT 524
Query: 650 AALKIKREAIR 660
           A  K+ ++ +R
Sbjct: 525 AVGKVDKKQLR 535

>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 105/236 (44%), Gaps = 15/236 (6%)
Query: 408 LLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVD 467
           L+  S   ++L     F+  G    +   ++ I     A I   YG TE     T   V 
Sbjct: 250 LMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVT 309
Query: 468 DSSVGRVGAPLPCSFIK----LIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT 523
           +  + +  + LP  + K    L+   E G +  D    +GEIVI GP+V+VGY  + E T
Sbjct: 310 EEVLDQYKS-LPVGYCKSDCRLLIMKEDGTIAPDGE--KGEIVIVGPSVSVGYLGSPELT 366
Query: 524 KEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPY 583
           ++ + + D G R + TGD G V  +G L    R    +KL HG  + L ++E  L    Y
Sbjct: 367 EKAFTMID-GERAYKTGDAGYVE-NGLLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSY 423
Query: 584 VDN---IMMHADPFHSYCVALVVASQPAVEEWAAKQGIVGK--NARLDKFEIPAKI 634
           V+    + +     + Y +A+VV  + + E+       + K  N RL  + IP K 
Sbjct: 424 VEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKF 479

>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 105/236 (44%), Gaps = 15/236 (6%)
Query: 408 LLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVD 467
           L+  S   ++L     F+  G    +   ++ I     A I   YG TE     T   V 
Sbjct: 250 LMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVT 309
Query: 468 DSSVGRVGAPLPCSFIK----LIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT 523
           +  + +  + LP  + K    L+   E G +  D    +GEIVI GP+V+VGY  + E T
Sbjct: 310 EEVLDQYKS-LPVGYCKSDCRLLIMKEDGTIAPDGE--KGEIVIVGPSVSVGYLGSPELT 366
Query: 524 KEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPY 583
           ++ + + D G R + TGD G V  +G L    R    +KL HG  + L ++E  L    Y
Sbjct: 367 EKAFTMID-GERAYKTGDAGYVE-NGLLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSY 423
Query: 584 VDN---IMMHADPFHSYCVALVVASQPAVEEWAAKQGIVGK--NARLDKFEIPAKI 634
           V+    + +     + Y +A+VV  + + E+       + K  N RL  + IP K 
Sbjct: 424 VEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKF 479

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 123/573 (21%), Positives = 224/573 (39%), Gaps = 128/573 (22%)
Query: 102 GEYEWLTYGQAFETICNF---ASGLAQ-LGHKKEERVAIFADTRAEWFVALQGCFRRNVT 157
           G +  +T GQ   T  N    AS LA+ L   ++ RV ++ D   +  + +  C+  N+ 
Sbjct: 15  GHHIAITDGQESYTYQNLYCEASLLAKRLKAYQQSRVGLYIDNSIQSIILIHACWLANIE 74
Query: 158 VVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS 217
           +  I   L    +   +   +V  + C        ++L G       ++ +D +I  A  
Sbjct: 75  IAMINTRLTPNEMTNQMRSIDVQLIFCTLP-----LELRG-----FQIVSLD-DIEFAGR 123
Query: 218 SVEQSGRWKIT-----SFADVQILGRENP---VDADYPVSADVAVIMYTSGSTGLPKGVM 269
            +  +G    T       ++  ++ +E+P   ++  + +  D+A IM+TSG+TG  K V 
Sbjct: 124 DITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLD-DIASIMFTSGTTGPQKAVP 182
Query: 270 MTHGNVLATVSAVMTIVPDLG-SKDV-YLAYLPLAHVLELVAENLIAGVGSAIGYGTPLT 327
            T  N  A+          LG  +D  +L+ LP+ H+                       
Sbjct: 183 QTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHI----------------------- 216
Query: 328 LTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARR 387
                        G + +LR  +      I+D+               ++++  +    R
Sbjct: 217 ------------SGLSVLLRAVIEGFTVRIVDKFN-------------AEQILTMIKNER 251
Query: 388 LSAIN-----GSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINI 442
           ++ I+      +W    GL +  +NL      + IL G        GA LSA T     +
Sbjct: 252 ITHISLVPQTLNWLMQQGLHE-PYNL------QKILLG--------GAKLSA-TMIETAL 295
Query: 443 CLGAPIGQGYGLTETCAG--GTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPM 500
               PI   +G+TETC+       E+  +    VG P     +K+ +  + G+       
Sbjct: 296 QYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGH------- 348
Query: 501 PRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMR---WFYTGDVGQVHADGCLEIIDRK 557
             GE++I G NV  GY         +Y  D  G     +F TGD+ ++  +G + I DR+
Sbjct: 349 --GELMIKGANVMNGY---------LYPTDLTGTFENGYFNTGDIAEIDHEGYVMIYDRR 397
Query: 558 KDIVKLQHGEYVSLGKVEAALIVSPYVDNIMM--HADPFHSYCVALVVASQPAVEEWAAK 615
           KD++ +  GE +   ++E      P + + +   H D        L   S+  +   +  
Sbjct: 398 KDLI-ISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI---SKA 453
Query: 616 QGIVGKNARLDKFEIPAKI-KLLSYPWTSEAGL 647
           Q I   +  L K+++P    K+ + P+TS   L
Sbjct: 454 QLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKL 486

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 109/249 (43%), Gaps = 30/249 (12%)
Query: 428 GGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSS---VGRVGAPL-PCSFI 483
           GGA  SA+  R +    G  + Q +G+ E      ++ +DD     V   G P+ P    
Sbjct: 306 GGAKFSAEAARRVKAVFGCTLQQVFGMAEGLV--NYTRLDDPEEIIVNTQGKPMSPYDES 363
Query: 484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVG 543
           ++ D     +     P   G ++  GP    GY+K EE     +  D     ++ TGD+ 
Sbjct: 364 RVWD----DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDG----FYRTGDIV 415
Query: 544 QVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH----SYCV 599
           ++  DG + +  R KD +  + GE V+  +VE  L+  P V +  M + P        CV
Sbjct: 416 RLTRDGYIVVEGRAKDQIN-RGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCV 474
Query: 600 ALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLL-SYPWTSEAGLVTAALKIKREA 658
            ++   +      AA+     +   L  ++IP +++ + S+P T          K+ ++A
Sbjct: 475 FIIPRDEAPK---AAELKAFLRERGLAAYKIPDRVEFVESFPQTGVG-------KVSKKA 524
Query: 659 IRKAFADDL 667
           +R+A ++ L
Sbjct: 525 LREAISEKL 533

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 120/564 (21%), Positives = 214/564 (37%), Gaps = 106/564 (18%)
Query: 118 NFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNET 177
             A+G  +LG ++++RV +      E+F  +   FR     V    S     + Y     
Sbjct: 62  RLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFA 121
Query: 178 EVTTVICGSK----ELKKLV-DLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFAD 232
           E    I        + + L   +  +L T+K++I                   +   F  
Sbjct: 122 EAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAG----------------EAEEFLP 165
Query: 233 VQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSK 292
           ++ L  E PV      S+DVA +  + GSTGL K +  TH + + ++   + +   L   
Sbjct: 166 LEDLHTE-PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCW-LDHS 223
Query: 293 DVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVL----RP 348
            VYLA LP AH   L +     GV   +  G  + L+ + S        DA  L    + 
Sbjct: 224 TVYLAALPXAHNYPLSS----PGVLGVLYAGGRVVLSPSPSP------DDAFPLIEREKV 273
Query: 349 TVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNL 408
           T+ A VP +     D    + D          DL+  + L  + G+ F A          
Sbjct: 274 TITALVPPLAXVWXDAASSRRD----------DLSSLQVLQ-VGGAKFSAEAAR------ 316
Query: 409 LVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDD 468
               +V+A+ G  ++ +                       G   GL          E+  
Sbjct: 317 ----RVKAVFGCTLQQVF----------------------GXAEGLVNYTRLDDPEEIIV 350
Query: 469 SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYK 528
           ++ G+  +P   S +    W +  +     P   G ++  GP    GY+K EE     + 
Sbjct: 351 NTQGKPXSPYDESRV----WDD--HDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFT 404
Query: 529 VDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIM 588
            D     ++ TGD+ ++  DG + +  R KD +  + GE V+  +VE  L+  P V +  
Sbjct: 405 EDG----FYRTGDIVRLTRDGYIVVEGRAKDQIN-RGGEKVAAEEVENHLLAHPAVHDAA 459
Query: 589 MHADPFH----SYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLL-SYPWTS 643
             + P        CV ++   +      AA+     +   L  ++IP +++ + S+P T 
Sbjct: 460 XVSXPDQFLGERSCVFIIPRDEAPK---AAELKAFLRERGLAAYKIPDRVEFVESFPQTG 516
Query: 644 EAGLVTAALKIKREAIRKAFADDL 667
                    K+ ++A+R+A ++ L
Sbjct: 517 VG-------KVSKKALREAISEKL 533

>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 84/199 (42%), Gaps = 28/199 (14%)
Query: 401 LEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSAD---TQRFINICLGAPIGQGYGLTET 457
           L   L+N LV     A  G  +R+ ++GG P S       R  +  L   +G GYG  E+
Sbjct: 309 LSASLFNFLVDEVPEAFEG--VRYAITGGEPASVPHVAKARRDHPALR--LGNGYGPAES 364
Query: 458 CAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGG---YLTSDSPMPR-----GEIVIAG 509
               T   V    +   G  LP      I  P  G   Y+  D   P      GE+ +AG
Sbjct: 365 MGFTTHHAVVAGDLS--GTALP------IGVPLAGKRAYVLDDDLKPAANGALGELYVAG 416
Query: 510 PNVTVGYFKNEEKTKEVYKVDD----KGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQH 565
             +  GY      T E +  D      G R + TGD+ +  ADG LE + R  D VK++ 
Sbjct: 417 AGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIR- 475
Query: 566 GEYVSLGKVEAALIVSPYV 584
           G  V  G+VEA L+  P V
Sbjct: 476 GFRVEPGEVEARLVGHPAV 494

>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 86/212 (40%), Gaps = 17/212 (8%)
Query: 96  FEKLHLGEYEWLTYGQAFETICNFASGLA-QLGHKKEERVAIFADTRAEWFVALQGCFRR 154
           FE    G+   +TY +  E +C  A  L   +G +K + VA++     E  + L    R 
Sbjct: 103 FEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRI 162
Query: 155 NVTVVTIYASLGEEALCYSLNETEVTTVICGSK--------ELKKLVDLS-GQLDTVKHV 205
                 ++A     +L   +N+ +   VI   +        E K++VD +  +   V+HV
Sbjct: 163 GAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHV 222
Query: 206 ICM-DANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGL 264
           +     N PS      +   W  T     +      PVD++ P+      ++YTSGSTG 
Sbjct: 223 LVYRKTNNPSVAFHAPRDLDWA-TEKKKYKTYYPCTPVDSEDPL-----FLLYTSGSTGA 276
Query: 265 PKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL 296
           PKGV  +    L      M    D   +DV+ 
Sbjct: 277 PKGVQHSTAGYLLGALLTMRYTFDTHQEDVFF 308

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 82/204 (40%), Gaps = 24/204 (11%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           +TY Q        A  L  LG  K +RVA+      E+     G  +     V I   L 
Sbjct: 30  MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 89
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLD---TVKHVICMDANIPSAVSSVEQSG 223
              + + L+++    VI G+     +  +  Q D   TV   I  D        S+ +  
Sbjct: 90  APEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGAD--------SLAERL 141
Query: 224 RWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVM 283
           R        V+  G +N              IMYTSG+TG PKGV+ TH +V +  S+  
Sbjct: 142 RSAAADEPAVECGGDDN------------LFIMYTSGTTGHPKGVVHTHESVHSAASSWA 189
Query: 284 TIVPDLGSKDVYLAYLPLAHVLEL 307
           + + D+  +D  L  LP+ HV  L
Sbjct: 190 STI-DVRYRDRLLLPLPMFHVAAL 212

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 13/136 (9%)
Query: 422 IRFILSGGAPLSADTQRFINICLGAPIG--QGYGLTETCAGGTFSEVDDSSVGRVGAPLP 479
            R+ ++GGAP+    +  I I     I   QGY LTE+C GGT    +D+      A   
Sbjct: 272 FRYFITGGAPMP---EALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRA 328
Query: 480 CSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYT 539
             F  +    + G +        GE+VI    +   Y+   E T++ +   D G  WF T
Sbjct: 329 TMFTDVAVRGDDGVIREHG---EGEVVIKSDILLKEYWNRPEATRDAF---DNG--WFRT 380
Query: 540 GDVGQVHADGCLEIID 555
           GD+G++  +G L I D
Sbjct: 381 GDIGEIDDEGYLYIKD 396

>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 445 GAPIGQGYGLTETCAGGTFSE-----VDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSP 499
            A I   YG TE     +  E     VD+ +   +G P P S   +ID  +G  L+S   
Sbjct: 290 SAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDE-DGKELSSGE- 347
Query: 500 MPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCL 551
             +GEI++ GP V+ GY  N EKT E +    KG   ++TGD+G +  D  L
Sbjct: 348 --QGEIIVTGPAVSKGYLNNPEKTAEAF-FTFKGQPAYHTGDIGSLTEDNIL 396

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 80/191 (41%), Gaps = 21/191 (10%)
Query: 120 ASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179
           A  L  L  KK +RVA+ A+T +E+  A   C    +  V +    G             
Sbjct: 62  AKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPXG------------- 108
Query: 180 TTVICGSKELKKLVDLSGQLDTVK--HVICMDANIPSAVSSVEQSGRWKITSFADVQILG 237
                G ++      L G L + +   +I  D  +P   ++   +    + S A  + L 
Sbjct: 109 ----VGQRD-SWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLSHAWFKALP 163
Query: 238 RENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA 297
            E  V    PV  D+A + YTSGST  P+GV++TH  V A + A+      L   D  ++
Sbjct: 164 -EADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPGDRCVS 222
Query: 298 YLPLAHVLELV 308
           +LP  H   LV
Sbjct: 223 WLPFYHDXGLV 233

>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w Mutant From Mycobacterium Tuberculosis Length = 480

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 94/239 (39%), Gaps = 35/239 (14%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           LT+ Q +    N A  L++ G   + RV I A    E+ VA  G  +     V +    G
Sbjct: 59  LTWSQLYRRTLNVAQELSRCGSTGD-RVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQG 117
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
                  + +    +V+  S  +  L   S   D V+HV       P ++  V+      
Sbjct: 118 ------GVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVD------ 165
Query: 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT-- 284
                D+         + +YP +A    + YTSGST  P GV+M+H NV      +M+  
Sbjct: 166 ---LLDLDAPNGYTFKEDEYPSTA---YLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY 219
Query: 285 ------IVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKK 337
                 I P        +++LP  H +      L+ G+ + I  G P  LT   S +++
Sbjct: 220 FADTDGIPP---PNSALVSWLPFYHDM-----GLVIGICAPILGGYPAVLTSPVSFLQR 270

>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 87/200 (43%), Gaps = 19/200 (9%)
Query: 446 APIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSD---SPMP- 501
           A I   YG TE     T  E+ +  + R  + LP  F K    P+      D    P+P 
Sbjct: 287 AKIFNTYGPTEATVAVTSVEITNDVISRSES-LPVGFAK----PDMNIFIMDEEGQPLPE 341
Query: 502 --RGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKD 559
             +GEIVIAGP+V+ GY    E T++ +    +G   + TGD G +  DG +    R   
Sbjct: 342 GEKGEIVIAGPSVSRGYLGEPELTEKAF-FSHEGQWAYRTGDAGFIQ-DGQIFCQGRLDF 399
Query: 560 IVKLQHGEYVSLGKVEAALIVSPYVDN---IMMHADPFHSYCVALVVASQPAVEEWAAKQ 616
            +KL HG  + L ++E  +  S YV +   I    +    Y +A +V  +   E+     
Sbjct: 400 QIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLT 458
Query: 617 GIVGKN--ARLDKFEIPAKI 634
             + K   A L  + IP K 
Sbjct: 459 SAIKKELAASLPAYMIPRKF 478

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 126/278 (45%), Gaps = 49/278 (17%)
Query: 405 LW-NLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTF 463
           LW   L+  + RA L   ++ +  GGA LSA     I   +G  + Q +G+ E      +
Sbjct: 287 LWLQALIEGESRAQLAS-LKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLV--NY 343
Query: 464 SEVDDSS---VGRVGAPLPCSFIKLIDWPEGGYLTSD---SPMPRGEI---VIAGPNVTV 514
           + +DDS+   +   G P+ C        P+     +D   +P+P+GE+   +  GP    
Sbjct: 344 TRLDDSAEKIIHTQGYPM-C--------PDDEVWVADAEGNPLPQGEVGRLMTRGPYTFR 394
Query: 515 GYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKV 574
           GY+K+ +     +  D  G  ++ +GD+  +  +G + +  R+KD +  + GE ++  ++
Sbjct: 395 GYYKSPQHNASAF--DANG--FYCSGDLISIDPEGYITVQGREKDQIN-RGGEKIAAEEI 449
Query: 575 EAALIVSP---YVDNIMMHADPFHSYCVALVVASQP----AVEEWAAKQGIVGKNARLDK 627
           E  L+  P   Y   + M  +       A +V  +P     V  +  +QGI        +
Sbjct: 450 ENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQGIA-------E 502
Query: 628 FEIPAKIKLL-SYPWTSEAGLVTAALKIKREAIRKAFA 664
           F++P +++ + S P       +TA  K+ ++ +R+  A
Sbjct: 503 FKLPDRVECVDSLP-------LTAVGKVDKKQLRQWLA 533

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 19/170 (11%)
Query: 422 IRFILSGGAPLSADT-QRFINICLGAPIGQGYGLTETCAG-GTFSEVDDSSVGRVGAPLP 479
           +++ +  G PL+ +   RF+    G  + +G+G TET     TF  ++    G +G P P
Sbjct: 343 LKYAVVAGEPLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIATFPWMEPKP-GSIGKPTP 400
Query: 480 CSFIKLIDWPEGGYLTSDSPMPRGEIVI----AGP-NVTVGYFKNEEKTKEVYKVDDKGM 534
              I+L+D    G L        GEIVI      P  + V Y K+ E+T+E +       
Sbjct: 401 GYKIELMD--RDGRLCEVGE--EGEIVINTMEGKPVGLFVHYGKDPERTEETWHDG---- 452
Query: 535 RWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
            +++TGD+  +  DG L  + R  DI+K   G  V   +VE+ALI  P V
Sbjct: 453 -YYHTGDMAWMDEDGYLWFVGRADDIIKTS-GYKVGPFEVESALIQHPAV 500

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 105/244 (43%), Gaps = 35/244 (14%)
Query: 451 GYGLTETCAGGTFSEVDDSSVGR---VGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVI 507
            YG TET    T       ++G    +GAP+  + I ++D      L   S    GE+ I
Sbjct: 322 AYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD----ENLQLKSVGEAGELCI 377
Query: 508 AGPNVTVGYFKNEEKTKEVYKVDD---KGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQ 564
            G  +  GY+K  E T + + VD+    G + + TGD  +  +DG +E + R  + VK++
Sbjct: 378 GGEGLARGYWKRPELTSQKF-VDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIR 436
Query: 565 HGEYVSLGKVEAALIVSPYVDN--IMMHAD----PFHSYCVALVVASQPAVEEWAAKQGI 618
            G  V L +VE+ L+   Y+    + +H D    P+   C   V      +E+       
Sbjct: 437 -GHRVELEEVESILLKHMYISETAVSVHKDHQEQPY--LCAYFVSEKHIPLEQLRQ---- 489
Query: 619 VGKNARLDKFEIPAK-IKLLSYPWTSEAGL---------VTAALKIKREAIRKAFADDLA 668
              +  L  + IP+  I+L   P TS   +         +T  +++  EA R    + L 
Sbjct: 490 -FSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDLTFGMRVDYEAPRNEIEETLV 548
Query: 669 RLYE 672
            +++
Sbjct: 549 TIWQ 552

>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp Ligase Faal28 From Mycobacterium Tuberculosis Length = 480

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 94/249 (37%), Gaps = 41/249 (16%)
Query: 103 EYEW------LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNV 156
           E +W      LT+ Q +    N A  L++ G   + RV I A    E+ VA  G  +   
Sbjct: 49  EQDWDGVAITLTWSQLYRRTLNVAQELSRCGSTGD-RVVISAPQGLEYVVAFLGALQAGR 107
Query: 157 TVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216
             V +    G       + +    +V+  S  +  L   S   D V+HV       P ++
Sbjct: 108 IAVPLSVPQG------GVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSI 161
Query: 217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVL 276
             V+           D+         + +YP +A    + YTSGST  P GV+ +H NV 
Sbjct: 162 IEVD---------LLDLDAPNGYTFKEDEYPSTA---YLQYTSGSTRTPAGVVXSHQNVR 209
Query: 277 ATVSAVMT--------IVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTL 328
                + +        I P        +++LP  H        L+ G+ + I  G P  L
Sbjct: 210 VNFEQLXSGYFADTDGIPP---PNSALVSWLPFYH-----DXGLVIGICAPILGGYPAVL 261
Query: 329 TDTSSKIKK 337
           T   S +++
Sbjct: 262 TSPVSFLQR 270

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 77/195 (39%), Gaps = 36/195 (18%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           L+Y +  E     A  L + G  K   VA++     E  + + G  +     + +   L 
Sbjct: 490 LSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLP 549
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
           E+ + Y L ++    ++   +E+K+                  A +P   +++       
Sbjct: 550 EDRISYMLADSAAACLLT-HQEMKEQA----------------AELPYTGTTL------- 585
Query: 227 ITSFADVQILGRENPVDADYPVSA----DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV 282
              F D Q    E   D   P +A    D A IMYTSG+TG PKG + TH N+   V  V
Sbjct: 586 ---FIDDQTRFEEQASD---PATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHV 639
Query: 283 MTIVPDLGSKDVYLA 297
             +      +D +L+
Sbjct: 640 DYMA--FSDQDTFLS 652

>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 247 PVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLA 302
           P + D+A ++YTSG+TG PKGV + H NVLA ++   ++  D    D +L +  L+
Sbjct: 172 PGAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVF-DFSGDDRWLLFHSLS 226

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	672
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	7e-72
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	1e-68
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	6e-68
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	2e-67
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	1e-63
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	1e-62
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	3e-62
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	5e-62
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	5e-62
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	2e-61
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	4e-61
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	3e-60
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	3e-59
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	2e-58
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	2e-57
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	1e-45
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	7e-36
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	1e-23
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	9e-15
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	2e-21
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	2e-13
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	2e-20
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	1e-13
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-19
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	5e-19
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	2e-10
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	5e-17
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	1e-15
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-15
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	2e-14
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	3e-12
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	4e-11
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	2e-10
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	8e-09
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	1e-09
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	6e-05
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	3e-09
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  241 bits (618), Expect = 7e-72
 Identities = 108/520 (20%), Positives = 193/520 (37%), Gaps = 112/520 (21%)

Query: 59  TLAELFEQSCKEHGDKYLLGTRQLISRETEVADN-GRSFEKLHLGEYEWLTYGQAFETIC 117
           +LA+  + + ++ G+K       +IS E +       S           + + +  E   
Sbjct: 20  SLADRIDAAAEKFGEK-----TAIISAEPKFPSEFPES-----------MNFLEICEVTK 63

Query: 118 NFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNET 177
             ASG+++ G +K E V +      ++ + +   +R   T V I        L + LN++
Sbjct: 64  KLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDS 123

Query: 178 EVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILG 237
           E TT++  S   +    +  +   V+ V  +   + S                ++V   G
Sbjct: 124 EATTLVVHSMLYENFKPVLEKTG-VERVFVVGGEVNS---------------LSEVMDSG 167

Query: 238 RENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA 297
            E+  +       DVA+I YT G+TG+PKGVM+TH N+ A    +      L   D  + 
Sbjct: 168 SEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATG-LSHMDTIVG 226

Query: 298 YLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVP-- 355
            +P+ H  E    NL+  VG+             +  I+K         + T   +VP  
Sbjct: 227 CMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEK--------YKGTFSWAVPPA 278

Query: 356 --AILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSK 413
              +++ +    +             +D +                              
Sbjct: 279 LNVLVNTLESSNKT------------YDWS------------------------------ 296

Query: 414 VRAILGGRIRFILSGGAPLSADTQR-------FINICLGAPIGQGYGLTETCAGGTFSEV 466
                   ++   +G  P++                       Q +G+TE C   T +  
Sbjct: 297 -------YLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPP 349

Query: 467 DDSS-VGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNVTVGYFKNEEK 522
                    G P+    +K+I   E G       +     GEIVI GPN+  GY+K E++
Sbjct: 350 LRLDKSTTQGVPMSDIELKVIS-LEDG-----RELGVGESGEIVIRGPNIFKGYWKREKE 403

Query: 523 TKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVK 562
            +E +  D+KG ++F TGDVG +  +G L   DR K+++K
Sbjct: 404 NQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIK 443

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  231 bits (592), Expect = 1e-68
 Identities = 103/469 (21%), Positives = 169/469 (36%), Gaps = 93/469 (19%)

Query: 99  LHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTV 158
           +     + ++Y +        A+ L   G +  +RVA   +   E  V      R     
Sbjct: 21  IETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVY 80

Query: 159 VTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSS 218
           + +  +     L Y + + E   V+C   +   +  ++ ++      +      P    S
Sbjct: 81  LPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLG-----PDGRGS 135

Query: 219 VEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAT 278
           +  +      +FA +          AD     D+A I+YTSG+TG  KG M++H N+ + 
Sbjct: 136 LTDAAAGASEAFATI-------DRGAD-----DLAAILYTSGTTGRSKGAMLSHDNLASN 183

Query: 279 VSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLT---DTSSKI 335
              ++         DV +  LP+ H   L            +     +      D    +
Sbjct: 184 SLTLVDYW-RFTPDDVLIHALPIYHTHGLFV-----ASNVTLFARGSMIFLPKFDPDKIL 237

Query: 336 KKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSW 395
                    + R TV+  VP    R                                   
Sbjct: 238 D-------LMARATVLMGVPTFYTR----------------------------------- 255

Query: 396 FGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLT 455
                       LL   ++     G +R  +SG APL ADT R  +   G  + + YG+T
Sbjct: 256 ------------LLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMT 303

Query: 456 ETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNV 512
           ET    +     D   G VG  LP    ++ D PE G       +PR   G I + GPNV
Sbjct: 304 ETNMNTSNPYDGDRVPGAVGPALPGVSARVTD-PETG-----KELPRGDIGMIEVKGPNV 357

Query: 513 TVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
             GY++  EKTK  ++ D     +F TGD+G++   G + I+ R KD+V
Sbjct: 358 FKGYWRMPEKTKSEFRDD----GFFITGDLGKIDERGYVHILGRGKDLV 402

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  231 bits (591), Expect = 6e-68
 Identities = 101/517 (19%), Positives = 171/517 (33%), Gaps = 108/517 (20%)

Query: 59  TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
           +      +  + +      G     +     A  G              +Y +  E  C 
Sbjct: 24  SAGTQLRKYMERYAKL---GAIAFTN-----AVTGVD-----------YSYAEYLEKSCC 64

Query: 119 FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETE 178
               L   G   + R+A+ ++   E+F+ +       V V           L +SL  ++
Sbjct: 65  LGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISK 124

Query: 179 VTTVICGSKELKKLVDLSGQLDTVKHVICMDANI-PSAVSSVEQSGRWKITSFADVQILG 237
            T V    K L K++ +   + T+K ++ +D+ +       ++   +             
Sbjct: 125 PTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFK 184

Query: 238 RENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP--DLGSKDVY 295
                  +      VA+IM +SGSTGLPKGV +TH N++   S     +    +      
Sbjct: 185 TVEVDRKE-----QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAV 239

Query: 296 LAYLPLAHVLELVAENLIAGVGSAIGYGTPL------TLTDTSSKIKKGTQGDASVLRPT 349
           L  +P  H   +            +  G  +              ++          + T
Sbjct: 240 LTVVPFHHGFGMFT------TLGYLICGFRVVMLTKFDEETFLKTLQD--------YKCT 285

Query: 350 VMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLL 409
            +  VP +   +          K  L  K +DL                           
Sbjct: 286 SVILVPTLFAIL---------NKSELLNK-YDL--------------------------- 308

Query: 410 VFSKVRAILGGRIRFILSGGAPLSADTQ-RFINICLGAPIGQGYGLTETCAGGTFSEVDD 468
             S +  I         SGGAPLS +             + QGYGLTET +    +   D
Sbjct: 309 --SNLVEI--------ASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGD 358

Query: 469 SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMP---RGEIVIAGPNVTVGYFKNEEKTKE 525
              G  G  +P    K+ID  +         +    RGE+ + GP +  GY  N E TKE
Sbjct: 359 DKPGASGKVVPLFKAKVID-LDTK-----KSLGPNRRGEVCVKGPMLMKGYVNNPEATKE 412

Query: 526 VYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVK 562
           +   +     W +TGD+G    +    I+DR K ++K
Sbjct: 413 LIDEE----GWLHTGDIGYYDEEKHFFIVDRLKSLIK 445

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  229 bits (587), Expect = 2e-67
 Identities = 102/471 (21%), Positives = 165/471 (35%), Gaps = 93/471 (19%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           +TY + FE     A  + + G     R+ + ++   ++F+ + G     V V        
Sbjct: 51  ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 110

Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
           E  L  S+N ++ T V    K L+K++++  +L  ++ +I MD       S  +  G   
Sbjct: 111 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMD-------SKTDYQGFQS 163

Query: 227 ITSFADVQILGRENPVDADYPVSA---DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVM 283
           + +F    +    N  D           +A+IM +SGSTGLPKGV + H       S   
Sbjct: 164 MYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHAR 223

Query: 284 TIVP--DLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPL------TLTDTSSKI 335
             +    +      L+ +P  H   +            +  G  +              +
Sbjct: 224 DPIFGNQIIPDTAILSVVPFHHGFGMFT------TLGYLICGFRVVLMYRFEEELFLRSL 277

Query: 336 KKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSW 395
           +          +      VP +             AK  L  K +DL             
Sbjct: 278 QD--------YKIQSALLVPTLFSFF---------AKSTLIDK-YDL------------- 306

Query: 396 FGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQ-RFINICLGAPIGQGYGL 454
                           S +  I         SGGAPLS +             I QGYGL
Sbjct: 307 ----------------SNLHEI--------ASGGAPLSKEVGEAVAKRFHLPGIRQGYGL 342

Query: 455 TETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMP---RGEIVIAGPN 511
           TET +    +   D   G VG  +P    K++D  + G       +    RGE+ + GP 
Sbjct: 343 TETTSAILITPEGDDKPGAVGKVVPFFEAKVVD-LDTG-----KTLGVNQRGELCVRGPM 396

Query: 512 VTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVK 562
           +  GY  N E T  +   D     W ++GD+     D    I+DR K ++K
Sbjct: 397 IMSGYVNNPEATNALIDKD----GWLHSGDIAYWDEDEHFFIVDRLKSLIK 443

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  219 bits (560), Expect = 1e-63
 Identities = 112/522 (21%), Positives = 184/522 (35%), Gaps = 124/522 (23%)

Query: 59  TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
            L     ++   H  K  L              NG              TY     T   
Sbjct: 23  PLHSYVLENLSNHSSKPCL----------INGANGDV-----------YTYADVELTARR 61

Query: 119 FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETE 178
            ASGL ++G ++ + + +F  +  E+ +A  G   R   +           L      + 
Sbjct: 62  VASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASR 121

Query: 179 VTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGR 238
              +I  +   +K+ D + + D    V+C+D+     +             F+++     
Sbjct: 122 AKLLITQACYYEKVKDFARESDV--KVMCVDSAPDGCLH------------FSELTQADE 167

Query: 239 ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP---DLGSKDVY 295
                 D     DV  + Y+SG+TGLPKGVM+TH  ++ +V+  +          S+DV 
Sbjct: 168 NEAPQVDISPD-DVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVI 226

Query: 296 LAYLPLAHVLELVAENLIAGVGSAIGYGTPLTL------TDTSSKIKKGTQGDASVLRPT 349
           L  LP+ H+  L      + +   +  G P+ +            I+K         + +
Sbjct: 227 LCVLPMFHIYALN-----SIMLCGLRVGAPILIMPKFEIGSLLGLIEK--------YKVS 273

Query: 350 VMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLL 409
           +   VP ++  +         AK     K  DL                           
Sbjct: 274 IAPVVPPVMMSI---------AKSPDLDK-HDL--------------------------- 296

Query: 410 VFSKVRAILGGRIRFILSGGAPLSADT-QRFINICLGAPIGQGYGLTETCAGGTFS---- 464
             S +R         I SGGAPL  +           A +GQGYG+TE            
Sbjct: 297 --SSLR--------MIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFA 346

Query: 465 -EVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMP---RGEIVIAGPNVTVGYFKNE 520
            E  D   G  G  +  + +K++D PE G     + +P    GEI I G  +  GY  + 
Sbjct: 347 KEPFDIKPGACGTVVRNAEMKIVD-PETG-----ASLPRNQPGEICIRGDQIMKGYLNDP 400

Query: 521 EKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVK 562
           E T      +     W +TGD+G +  D  L I+DR K+++K
Sbjct: 401 EATSRTIDKE----GWLHTGDIGYIDDDDELFIVDRLKELIK 438

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  215 bits (550), Expect = 1e-62
 Identities = 95/516 (18%), Positives = 169/516 (32%), Gaps = 129/516 (25%)

Query: 59  TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
           +L     +  +++G                + D   S            TY   +     
Sbjct: 2   SLDFWLYKQAQQNGHH------------IAITDGQES-----------YTYQNLYCEASL 38

Query: 119 FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETE 178
            A  L      ++ RV ++ D   +  + +  C+  N+ +  I   L    +   +   +
Sbjct: 39  LAKRL---KAYQQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSID 95

Query: 179 VTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGR 238
           V  + C       L     Q+ ++  +     +I +        G    TS   V     
Sbjct: 96  VQLIFCTLP----LELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKES 151

Query: 239 ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP-DLGSKDVYLA 297
            + +        D+A IM+TSG+TG  K V  T  N  A  SA+             +L+
Sbjct: 152 PSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYA--SAIGCKESLGFDRDTNWLS 209

Query: 298 YLPLAHVLELVAENLIAGVGS---AIGYGTPLTL------TDTSSKIKKGTQGDASVLRP 348
            LP+ H         I+G+     A+  G  + +          + IK          R 
Sbjct: 210 VLPIYH---------ISGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNE--------RI 252

Query: 349 TVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNL 408
           T ++ VP  L+ +             + + L +                           
Sbjct: 253 THISLVPQTLNWL-------------MQQGLHEPY------------------------- 274

Query: 409 LVFSKVRAILGGRIRFILSGGAPLSADT-QRFINICLGAPIGQGYGLTETCAGGTFSEVD 467
                        ++ IL GGA LSA   +  +      PI   +G+TETC+    +  +
Sbjct: 275 ------------NLQKILLGGAKLSATMIETALQ--YNLPIYNSFGMTETCSQFLTATPE 320

Query: 468 DSS--VGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKE 525
                   VG P     +K+ + P             GE++I G NV  GY    + T  
Sbjct: 321 MLHARPDTVGMPSANVDVKIKN-PNKE--------GHGELMIKGANVMNGYLYPTDLTGT 371

Query: 526 VYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
               +     +F TGD+ ++  +G + I DR+KD++
Sbjct: 372 F--ENG----YFNTGDIAEIDHEGYVMIYDRRKDLI 401

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  214 bits (548), Expect = 3e-62
 Identities = 106/527 (20%), Positives = 178/527 (33%), Gaps = 152/527 (28%)

Query: 59  TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
           TLA+++ ++     D+            T    +G             LT+         
Sbjct: 7   TLADVYRRNAALFPDR------------TAFMVDGVR-----------LTHRDYLARAER 43

Query: 119 FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETE 178
            ASGL + G    +RVAI +   +E    +         ++ +   L  + + + L +  
Sbjct: 44  LASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGA 103

Query: 179 VTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGR 238
            + V+ G+     +  +   L  VK    +           + +     T F+       
Sbjct: 104 PSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLASD---TPFSAP----- 155

Query: 239 ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAY 298
                A      D  VI++T+   G P+G +++ GN+L   S+++     L   DV L  
Sbjct: 156 --EFGAA-----DGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-RLTEADVNLGM 207

Query: 299 LPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVL------------ 346
           LPL HV             + +G    L              G ASV+            
Sbjct: 208 LPLFHV-------------TGLGLMLTLQQA-----------GGASVIAAKFDPAQAARD 243

Query: 347 ----RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLE 402
               + TVMA    +L                    + D A   +L+             
Sbjct: 244 IEAHKVTVMAEFAPMLGN------------------ILDQAAPAQLA------------- 272

Query: 403 KLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGT 462
                              +R +     P +   +RF   C  A     +G +ET    T
Sbjct: 273 ------------------SLRAVTGLDTPETI--ERFEATCPNATFWATFGQSETSGLST 312

Query: 463 FSEVDD--SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNVTVGYF 517
           F+   D   S GR   PL    + ++D  E        P+P    GEIV+ GP V  GY+
Sbjct: 313 FAPYRDRPKSAGR---PLFWRTVAVVD-AED------RPLPPGEVGEIVLRGPTVFKGYW 362

Query: 518 KNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDR--KKDIVK 562
            N   T+  ++ +     W +TGD+G+  ADG L    R  +K+++K
Sbjct: 363 NNAAATQHAFR-NG----WHHTGDMGRFDADGYLFYAGRAPEKELIK 404

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  214 bits (548), Expect = 5e-62
 Identities = 107/485 (22%), Positives = 157/485 (32%), Gaps = 86/485 (17%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
            TYG+  E    FAS L  LG   EER+ +         VA  G     V  V     L 
Sbjct: 49  TTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLT 108

Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
                Y L  +    VI     ++ +       +     +         VS   +S    
Sbjct: 109 PADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLI--------VSQPRESEPRL 160

Query: 227 ITSFADVQILGRENPVDADYPVSA-DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI 285
              F +  ++    P          D+A  +Y+SGSTG PKG + TH N+  T       
Sbjct: 161 APLFEE--LIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKP 218

Query: 286 VPDLGSKDVYLAYLPLAHVLELVAENLIAGV---GSAIGYGTPLTLTDTSSKIKKGTQGD 342
           +  +   DV  +   L     L    L   +    +AI      T     +++ +     
Sbjct: 219 ILGIAENDVVFSAAKLFFAYGLGN-GLTFPLSVGATAILMAERPTADAIFARLVE----- 272

Query: 343 ASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLE 402
               RPTV   VP                                               
Sbjct: 273 ---HRPTVFYGVPT---------------------------------------------- 283

Query: 403 KLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGT 462
            L  N+LV   + A     IR   S G  L  +         G  I  G G TE      
Sbjct: 284 -LYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFL 342

Query: 463 FSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNVTVGYFKN 519
            +       G  G P+P   I+L D   G        +P    G++ I GP+  V Y+ N
Sbjct: 343 SNRAGAVEYGTTGRPVPGYEIELRD-EAG------HAVPDGEVGDLYIKGPSAAVMYWNN 395

Query: 520 EEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALI 579
            EK++  +   +    W  +GD      +GC     R  D++K+  G+YVS  +VE  L+
Sbjct: 396 REKSRATFL-GE----WIRSGDKYCRLPNGCYVYAGRSDDMLKVS-GQYVSPVEVEMVLV 449

Query: 580 VSPYV 584
               V
Sbjct: 450 QHDAV 454

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  214 bits (546), Expect = 5e-62
 Identities = 107/543 (19%), Positives = 181/543 (33%), Gaps = 130/543 (23%)

Query: 42  RNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHL 101
            +   + LV       S    L         D+              +    RS      
Sbjct: 7   HHHHSSGLVPRGSHMSSLFPALSPAPTGAPADR------------PALRFGERS------ 48

Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
                LTY +        A  +         RVA++A    E  VA+       V  V +
Sbjct: 49  -----LTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAAVPL 98

Query: 162 YASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQ 221
               G++ L + L+++  + V+                         DA +P A+ ++E 
Sbjct: 99  NPKSGDKELAHILSDSAPSLVLAPP----------------------DAELPPALGALE- 135

Query: 222 SGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281
               ++      +    E+  D       D A+++YTSG+TG PKG ++    +  T+ A
Sbjct: 136 ----RVDVDVRARGAVPEDGADDG-----DPALVVYTSGTTGPPKGAVIPRRALATTLDA 186

Query: 282 VMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQG 341
           +         +DV +  LPL HV       L+ G+   +  G  +      S        
Sbjct: 187 LAD-AWQWTGEDVLVQGLPLFHVH-----GLVLGILGPLRRGGSVRHLGRFST------- 233

Query: 342 DASVL-----RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWF 396
                       T++  VP +  R+                   D   A+ L+       
Sbjct: 234 -EGAARELNDGATMLFGVPTMYHRI-------------AETLPADPELAKALA------- 272

Query: 397 GAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTE 456
                                     R ++SG A L       I    G  + + YG+TE
Sbjct: 273 ------------------------GARLLVSGSAALPVHDHERIAAATGRRVIERYGMTE 308

Query: 457 TCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGY 516
           T    +     +   G VG PLP   ++L++  +G  + +      GEI + GPN+   Y
Sbjct: 309 TLMNTSVRADGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEY 367

Query: 517 FKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRK-KDIVKLQHGEYVSLGKVE 575
               + T   +  D     +F TGD+     DG + I+ RK  D++K   G  +  G++E
Sbjct: 368 LNRPDATAAAFTED----GFFRTGDMAVRDPDGYVRIVGRKATDLIK-SGGYKIGAGEIE 422

Query: 576 AAL 578
            AL
Sbjct: 423 NAL 425

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  212 bits (542), Expect = 2e-61
 Identities = 86/515 (16%), Positives = 158/515 (30%), Gaps = 124/515 (24%)

Query: 59  TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
           T+ E+  ++     D               +A   R            LT+ +    +  
Sbjct: 3   TVNEMLRRAATRAPDH------------CALAVPARGLR---------LTHAELRARVEA 41

Query: 119 FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETE 178
            A+ L   G + ++RVA+ A   A+  +A+    R       +   L    L   +   E
Sbjct: 42  VAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGE 101

Query: 179 VTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGR 238
           +T  +      +++ D   Q  +   +I +   +                     +    
Sbjct: 102 MTAAVIA--VGRQVADAIFQSGSGARIIFLGDLVRDG------------------EPYSY 141

Query: 239 ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP-DLGSKDVYLA 297
             P++      A  A I YTSG+TGLPK  ++      + V  + T V    G  +V L 
Sbjct: 142 GPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLG 201

Query: 298 YLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDA-SVL------RPTV 350
            +PL HV+   A      + +A+       + +                L      + T 
Sbjct: 202 LMPLYHVVGFFA-----VLVAALALDGTYVVVEEF---------RPVDALQLVQQEQVTS 247

Query: 351 MASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLV 410
           + + P  LD +         +          L                            
Sbjct: 248 LFATPTHLDALAAAAAHAGSS--------LKLD--------------------------- 272

Query: 411 FSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSS 470
                      +R +   GA +       ++  L       YG TE        +    +
Sbjct: 273 ----------SLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGT 322

Query: 471 VGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPN-VTVGYFKNEEKTKEV 526
                 P   S ++++    GG    D  +     GE+++A  +   VGY    + T E 
Sbjct: 323 EMA---PGFFSEVRIVR-IGGG---VDEIVANGEEGELIVAASDSAFVGYLNQPQATAEK 375

Query: 527 YKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
             + D G  W+ T DV     +G + I+ R  D++
Sbjct: 376 --LQD-G--WYRTSDVAVWTPEGTVRILGRVDDMI 405

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  212 bits (541), Expect = 4e-61
 Identities = 104/465 (22%), Positives = 162/465 (34%), Gaps = 102/465 (21%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           +TY Q        A  L  LG  K +RVA+      E+     G  +     V I   L 
Sbjct: 44  MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 103

Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
              + + L+++    VI G+     +  +  Q D    V                     
Sbjct: 104 APEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIG---------------- 147

Query: 227 ITSFADVQILGRENPVDADYPVSA-DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI 285
             S A+   L      +        D   IMYTSG+TG PKGV+ TH +V +  S+  + 
Sbjct: 148 ADSLAER--LRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAST 205

Query: 286 VPDLGSKDVYLAYLPLAHV--LELVAENLIAGVGSAIGYG-TPLTLTDTSSKIKKGTQGD 342
           + D+  +D  L  LP+ HV  L  V  + + GV            +      I +     
Sbjct: 206 I-DVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSL---IVEE---- 257

Query: 343 ASVLRPTVMASVPAILDRVRD--GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWG 400
               R  +  +VPAIL+ +R      +             D                   
Sbjct: 258 ----RVCIGGAVPAILNFMRQVPEFAE------------LDA------------------ 283

Query: 401 LEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAG 460
                         R  +        +GGAP+     +         + QGY LTE+C G
Sbjct: 284 -----------PDFRYFI--------TGGAPMPEALIKIYAA-KNIEVVQGYALTESCGG 323

Query: 461 GTFSEVDDSS--VGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR--GEIVIAGPNVTVGY 516
           GT    +D+    G  G     + + +    +G             GE+VI    +   Y
Sbjct: 324 GTLLLSEDALRKAGSAGRATMFTDVAVRG-DDG------VIREHGEGEVVIKSDILLKEY 376

Query: 517 FKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
           +   E T++    D+ G  WF TGD+G++  +G L I DR KD++
Sbjct: 377 WNRPEATRDA--FDN-G--WFRTGDIGEIDDEGYLYIKDRLKDMI 416

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  210 bits (537), Expect = 3e-60
 Identities = 87/526 (16%), Positives = 156/526 (29%), Gaps = 128/526 (24%)

Query: 54  WEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAF 113
           W     L  +     + H                 +    R            L+Y +  
Sbjct: 27  WIDQ-PLTRILTVGVQSHPHS------------LAIICGERQ-----------LSYIELD 62

Query: 114 ETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYS 173
               N A+ LA+ G  K +   +     AE+++      +  V V+    S  +  L   
Sbjct: 63  RLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAF 122

Query: 174 LNETEVTTVIC-----GSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKIT 228
           + + +   +I           + +  L     + + ++ ++                   
Sbjct: 123 IKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDF------------- 169

Query: 229 SFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPD 288
              D      E  VD     + +VA    + GSTG PK +  TH +   +V A   I   
Sbjct: 170 GLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-G 228

Query: 289 LGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVL-- 346
           L S    L  LP  H   L       G    +  G  + +               +    
Sbjct: 229 LNSNTRLLCALPAPHNFMLS----SPGALGVLHAGGCVVMAPNPEP--------LNCFSI 276

Query: 347 ----RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLE 402
               +  + + VP+                                          W LE
Sbjct: 277 IQRHQVNMASLVPSA--------------------------------------VIMW-LE 297

Query: 403 KLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGT 462
           K                  ++ +  GGA       R +   L   + Q +G+ E      
Sbjct: 298 KAAQYKDQIQ--------SLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLV--N 347

Query: 463 FSEVDDSS---VGRVGAPL-PCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNVTVG 515
           ++ +DDS        G P+     IK++D  +         +P    G +   GP    G
Sbjct: 348 YTRLDDSDEQIFTTQGRPISSDDEIKIVD-EQY------REVPEGEIGMLATRGPYTFCG 400

Query: 516 YFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
           Y+++ E   +V+  D     ++Y+GD+ Q   DG L ++ R KD +
Sbjct: 401 YYQSPEHNSQVFDED----NYYYSGDLVQRTPDGNLRVVGRIKDQI 442

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  214 bits (546), Expect = 3e-59
 Identities = 107/522 (20%), Positives = 176/522 (33%), Gaps = 116/522 (22%)

Query: 59  TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
           +L +   Q+  E   K  L               G              TY         
Sbjct: 62  SLHDYIFQNISEFATKPCL----------INGPTGHV-----------YTYSDVHVISRQ 100

Query: 119 FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETE 178
            A+   +LG  + + V +      E+ ++      R  T            +      + 
Sbjct: 101 IAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASN 160

Query: 179 VTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGR 238
              +I  ++ + K+  L      V   I  + ++P         G  + T          
Sbjct: 161 TKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIP------EGCLRFTELTQSTTEAS 214

Query: 239 ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPD---LGSKDVY 295
           E     +     DV  + Y+SG+TGLPKGVM+TH  ++ +V+  +          S DV 
Sbjct: 215 EVIDSVEISPD-DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVI 273

Query: 296 LAYLPLAHVLELVAENLIAGVGSAIGYGTPL------TLTDTSSKIKKGTQGDASVLRPT 349
           L  LP+ H+  L      + +   +  G  +       +      I++         + T
Sbjct: 274 LCVLPMFHIYALN-----SIMLCGLRVGAAILIMPKFEINLLLELIQR--------CKVT 320

Query: 350 VMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLL 409
           V   VP I+  +         AK   ++K +DL                           
Sbjct: 321 VAPMVPPIVLAI---------AKSSETEK-YDL--------------------------- 343

Query: 410 VFSKVRAILGGRIRFILSGGAPLSADTQ-RFINICLGAPIGQGYGLTETCAGGTFS---- 464
             S +R +         SG APL  + +         A +GQGYG+TE       S    
Sbjct: 344 --SSIRVV--------KSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFA 393

Query: 465 -EVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMP---RGEIVIAGPNVTVGYFKNE 520
            E      G  G  +  + +K++D P+ G       +     GEI I G  +  GY  N 
Sbjct: 394 KEPFPVKSGACGTVVRNAEMKIVD-PDTG-----DSLSRNQPGEICIRGHQIMKGYLNNP 447

Query: 521 EKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVK 562
             T E   +D  G  W +TGD+G +  D  L I+DR K+++K
Sbjct: 448 AATAET--IDKDG--WLHTGDIGLIDDDDELFIVDRLKELIK 485

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  205 bits (523), Expect = 2e-58
 Identities = 94/527 (17%), Positives = 169/527 (32%), Gaps = 134/527 (25%)

Query: 54  WEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAF 113
           W G  T  +L      ++GD+              +                  +Y +  
Sbjct: 22  WAGE-TFGDLLRDRAAKYGDR------------IAITCGNTH-----------WSYRELD 57

Query: 114 ETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYS 173
                 A+G  +LG ++++RV +      E+F  +   FR     V    S     + Y 
Sbjct: 58  TRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYF 117

Query: 174 LNETEVTTVIC-----GSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKIT 228
               E    I      G         +  +L T+K++I                   +  
Sbjct: 118 CEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGE-------------AEEFL 164

Query: 229 SFADVQILGRENP-VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP 287
              D+     + P V +      DVA +  + GSTGL K +  TH + + ++   + +  
Sbjct: 165 PLEDLHTEPVKLPEVKSS-----DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC- 218

Query: 288 DLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVL- 346
            L    VYLA LP+AH   L +  ++      +  G  + L+ + S              
Sbjct: 219 WLDHSTVYLAALPMAHNYPLSSPGVLG----VLYAGGRVVLSPSPSP--------DDAFP 266

Query: 347 -----RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGL 401
                + T+ A VP +                                         W +
Sbjct: 267 LIEREKVTITALVPPL--------------------------------------AMVW-M 287

Query: 402 EKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGG 461
           +         S ++         +  GGA  SA+  R +    G  + Q +G+ E     
Sbjct: 288 DAASSRRDDLSSLQ--------VLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLV-- 337

Query: 462 TFSEVDDSS---VGRVGAPL-PCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNVTV 514
            ++ +DD     V   G P+ P    ++ D            +     G ++  GP    
Sbjct: 338 NYTRLDDPEEIIVNTQGKPMSPYDESRVWD-DHD------RDVKPGETGHLLTRGPYTIR 390

Query: 515 GYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIV 561
           GY+K EE         + G  ++ TGD+ ++  DG + +  R KD +
Sbjct: 391 GYYKAEEHNAAS--FTEDG--FYRTGDIVRLTRDGYIVVEGRAKDQI 433

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  204 bits (521), Expect = 2e-57
 Identities = 107/592 (18%), Positives = 200/592 (33%), Gaps = 135/592 (22%)

Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
           L+Y +  +   N A  L + G K  E   +     AE ++      +  V  V    S  
Sbjct: 51  LSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110

Query: 167 EEALCYSLNETEVTTVIC-----GSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQ 221
              L    ++ E   +I             L     +  +++ V  ++ +    +     
Sbjct: 111 RSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAIN 170

Query: 222 SGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281
                              P  AD     +VA    + G+TG PK +  TH +   +V  
Sbjct: 171 HPAEDF----------TATPSPAD-----EVAYFQLSGGTTGTPKLIPRTHNDYYYSVRR 215

Query: 282 VMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQG 341
            + I      +  YL  +P AH   + +     G       G  + L    S        
Sbjct: 216 SVEIC-QFTQQTRYLCAIPAAHNYAMSS----PGSLGVFLAGGTVVLAADPSA------- 263

Query: 342 DASVL------RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSW 395
                      +  V A VP  +      + +              LA            
Sbjct: 264 -TLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESR--------AQLA------------ 302

Query: 396 FGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLT 455
                                     ++ +  GGA LSA     I   +G  + Q +G+ 
Sbjct: 303 -------------------------SLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMA 337

Query: 456 ETCAGGTFSEVDDSS---VGRVGAPL-PCSFIKLIDWPEGGYLTSDSPMPR---GEIVIA 508
           E      ++ +DDS+   +   G P+ P   + + D  EG      +P+P+   G ++  
Sbjct: 338 EGL--VNYTRLDDSAEKIIHTQGYPMCPDDEVWVAD-AEG------NPLPQGEVGRLMTR 388

Query: 509 GPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEY 568
           GP    GY+K+ +     +  +     ++ +GD+  +  +G + +  R+KD +  + GE 
Sbjct: 389 GPYTFRGYYKSPQHNASAFDAN----GFYCSGDLISIDPEGYITVQGREKDQI-NRGGEK 443

Query: 569 VSLGKVEAALIVSPYVDNIMMHA------DPFH--SYCVALVV---ASQPAVEEWAAKQG 617
           ++  ++E  L+  P V    ++A      D       C  LVV        V  +  +QG
Sbjct: 444 IAAEEIENLLLRHPAV----IYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQG 499

Query: 618 IVGKNARLDKFEIPAKIKLL-SYPWTSEAGLVTAALKIKREAIRKAFADDLA 668
           I    A    F++P +++ + S P       +TA  K+ ++ +R+  A   +
Sbjct: 500 I----AE---FKLPDRVECVDSLP-------LTAVGKVDKKQLRQWLASRAS 537

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  169 bits (431), Expect = 1e-45
 Identities = 132/556 (23%), Positives = 209/556 (37%), Gaps = 144/556 (25%)

Query: 59  TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
            L +  E++    G       ++++SR                GE    TY + ++    
Sbjct: 19  NLWDFLERAAALFGR------KEVVSRLHT-------------GEVHRTTYAEVYQRARR 59

Query: 119 FASGLAQLGHKKEERVAIFA-DTRA--E-WF-VALQGCFRRNVTVVTIYASLGEEALCYS 173
              GL  LG    +RVA    +     E +F V   G       + T    L  + + Y 
Sbjct: 60  LMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGA-----VLHTANPRLSPKEIAYI 114

Query: 174 LNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADV 233
           LN  E   ++     L  +  + G+L TV+H + MD   P    + E+            
Sbjct: 115 LNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEE------------ 162

Query: 234 QILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTH-GNVLATVSAVMTIVPDLGSK 292
             LG E       P       + YT+G+TGLPKGV+ +H   VL +++A +     L  K
Sbjct: 163 -ALGEEAD-PVRVP-ERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEK 219

Query: 293 DVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSK-IKKGTQGDASVL----- 346
           DV L  +P+ HV                 +  P   T   +K +  G + D + L     
Sbjct: 220 DVVLPVVPMFHVN---------------AWCLPYAATLVGAKQVLPGPRLDPASLVELFD 264

Query: 347 --RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKL 404
               T  A VP +       +   +++ G             RL                
Sbjct: 265 GEGVTFTAGVPTVW----LALADYLESTG------------HRLK--------------- 293

Query: 405 LWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFS 464
                  +  R ++G        G A   +   RF    +G  + QGYGLTET      +
Sbjct: 294 -------TLRRLVVG--------GSAAPRSLIARFER--MGVEVRQGYGLTETSPVVVQN 336

Query: 465 ----EVDDSSV-------GRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR-----GEIVIA 508
                ++  S         + G P+P   +++ D  EG       P+P+     GE+ + 
Sbjct: 337 FVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEG------RPVPKDGKALGEVQLK 389

Query: 509 GPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEY 568
           GP +T GY+ NEE T+     D  G  +F TGD+     +G +EI DR KD++K   GE+
Sbjct: 390 GPWITGGYYGNEEATRSALTPD--G--FFRTGDIAVWDEEGYVEIKDRLKDLIK-SGGEW 444

Query: 569 VSLGKVEAALIVSPYV 584
           +S   +E AL+  P V
Sbjct: 445 ISSVDLENALMGHPKV 460

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  140 bits (355), Expect = 7e-36
 Identities = 98/577 (16%), Positives = 161/577 (27%), Gaps = 156/577 (27%)

Query: 37  PGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSF 96
             H   +     +   S   + +L        +                    A     +
Sbjct: 3   SSHHHHHHSSGLVPRGSHMSVRSLPAALRACARLQPHD--------------PAFTFMDY 48

Query: 97  EKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNV 156
           E+   G    LT+ Q +    N A  L++ G    +RV I A    E+ VA  G  +   
Sbjct: 49  EQDWDGVAITLTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGR 107

Query: 157 TVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216
             V +    G                    +    ++  S        ++   + +   V
Sbjct: 108 IAVPLSVPQGGVTD----------------ERSDSVLSDSS----PVAILTTSSAVDDVV 147

Query: 217 SSVEQSGRWKITSFADVQILGRENPVDADYPV--SADVAVIMYTSGSTGLPKGVMMTHGN 274
             V +       S  +V +L  + P    +        A + YTSGST  P GV+M+H N
Sbjct: 148 QHVARRPGESPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQN 207

Query: 275 VLATVSAVM-----TIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLT 329
           V      +M                 +++LP  H +      L+ G+ + I  G P  LT
Sbjct: 208 VRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDM-----GLVIGICAPILGGYPAVLT 262

Query: 330 DTSSKIKKGTQ--GDASVLRPTVMASVP-----AILDRVRDGVRKKVDAKGGLSKKLFDL 382
              S +++  +     +       A+ P         R  D      D            
Sbjct: 263 SPVSFLQRPARWMHLMASDFHAFSAA-PNFAFELAARRTTDDDMAGRD------------ 309

Query: 383 AYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADT-QRFIN 441
                                          +  I        LSG   + A T +RF +
Sbjct: 310 ----------------------------LGNILTI--------LSGSERVQAATIKRFAD 333

Query: 442 ICLGAPIG-------QGYGLTETCAGGTFSEVDDS-----------SVGRV--------- 474
               A            Y L E       S+               S G           
Sbjct: 334 --RFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGAT 391

Query: 475 -----GAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNVTVGYFKNEEKTKEV 526
                  P     ++++D  +          P    GEI + G NV  GY++  ++++  
Sbjct: 392 SLISYMLPRSP-IVRIVD-SDTC-----IECPDGTVGEIWVHGDNVANGYWQKPDESERT 444

Query: 527 YKVDDKGM-------RWFYTGDVGQVHADGCLEIIDR 556
           +               W  TGD G V  DG + II R
Sbjct: 445 FGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 97.4 bits (243), Expect = 2e-21
 Identities = 46/235 (19%), Positives = 85/235 (36%), Gaps = 29/235 (12%)

Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
              E +TY Q  +     A+ L   G K  +RV +          A  GC       V I
Sbjct: 36  ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPI 95

Query: 162 YASLGEEA---LCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSS 218
           Y    E+        +  ++   V+  +  +KK                        +++
Sbjct: 96  YPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTA-------------------DELNT 136

Query: 219 VEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAT 278
             +  +    +   +++    +        S D+A + YTSGST  PKGVM++H N+L  
Sbjct: 137 NPKFLKIPAIALESIELNRSSSWQPTS-IKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDN 195

Query: 279 VSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSS 333
           ++ + T    +  + +  ++LP  H +      LI  + + I  G    +    S
Sbjct: 196 LNKIFTSF-HMNDETIIFSWLPPHHDM-----GLIGCILTPIYGGIQAIMMSPFS 244

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 72.3 bits (178), Expect = 2e-13
 Identities = 38/181 (20%), Positives = 62/181 (34%), Gaps = 47/181 (25%)

Query: 420 GRIRFILSGGAPLSADT-QRFINICLGAPIG-------QGYGLTETCAGGTFSEVDDSSV 471
                  +G  P+  +T + F         G         YGL E     T      S  
Sbjct: 289 SSWVTAFNGAEPVREETMEHFYQ--AFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYK 346

Query: 472 -----------GRV----------------GAPLPCSFIKLIDWPEGGYLTSDSPMPRGE 504
                       RV                G P+    +K+ID P+         +  GE
Sbjct: 347 TLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQ--EVKIID-PDTLIPCDFDQV--GE 401

Query: 505 IVIAGPNVTVGYFKNEEKTKEVY----KVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDI 560
           I +   +V  GY+   E+T+  +    K D++   +  TGD+G +H +  L +  R KD+
Sbjct: 402 IWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDL 460

Query: 561 V 561
           +
Sbjct: 461 I 461

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 94.2 bits (235), Expect = 2e-20
 Identities = 28/196 (14%), Positives = 77/196 (39%), Gaps = 14/196 (7%)

Query: 102 GEYEWLTYGQAFETICNFASGLAQ-LGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVT 160
           G+     + +  E     A+ L+   G ++ +RVA+      EW++ + GC R  +  + 
Sbjct: 69  GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMP 128

Query: 161 IYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVE 220
               +    + Y L  ++   ++ G + ++++  ++ +  +++  + +         + +
Sbjct: 129 GTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFK 188

Query: 221 QSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVS 280
           +      T+   V          +      + + I +TSG++GLPK    ++ ++     
Sbjct: 189 KLLNEASTTHHCV-------ETGSQ-----EASAIYFTSGTSGLPKMAEHSYSSLGLKAK 236

Query: 281 AVMTIVPDLGSKDVYL 296
                   L + D+  
Sbjct: 237 MDAGWT-GLQASDIMW 251

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 73.1 bits (180), Expect = 1e-13
 Identities = 41/172 (23%), Positives = 67/172 (38%), Gaps = 21/172 (12%)

Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTET---CAGGTFSEVDDSSVGRVGAP 477
            ++  ++ G  L  +T        G  I + YG TET   C      ++    +G     
Sbjct: 323 HLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGT---A 379

Query: 478 LPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVT-----VGYFKNEEKTKEVYKVDDK 532
             C  +++ID  +G  L   +    G+I I    +       GY  N +KT    + D  
Sbjct: 380 ASCYDVQIID-DKGNVLPPGTE---GDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGD-- 433

Query: 533 GMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
              ++  GD G    DG  + + R  DI+    G  +   +VE AL+  P V
Sbjct: 434 ---FWLLGDRGIKDEDGYFQFMGRADDIINSS-GYRIGPSEVENALMEHPAV 481

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 91.8 bits (229), Expect = 1e-19
 Identities = 84/412 (20%), Positives = 129/412 (31%), Gaps = 98/412 (23%)

Query: 234 QILGRENPVDADYPVSAD-VAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP-DLGS 291
                E P +  + V  D    I++TSG+TG PKGV ++H N+L+  + ++     D+  
Sbjct: 128 SAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPK 187

Query: 292 KDVYLAYLPL---AHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVL-- 346
           +   LA  P      V+              +  G  L        + K    D   L  
Sbjct: 188 QPQMLAQPPYSFDLSVMYWAP---------TLALGGTLFA------LPKELVADFKQLFT 232

Query: 347 -----RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGL 401
                   +  S P+  D                              A+    F    +
Sbjct: 233 TIAQLPVGIWTSTPSFAD-----------------------------MAMLSDDFCQAKM 263

Query: 402 EKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADT-QRFINICLGAPIGQGYGLTETCAG 460
             L                        G  L+  T ++       A I   YG TE    
Sbjct: 264 PAL------------------THFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVA 305

Query: 461 GTFSEVDDSSVGRV-----GAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNV 512
            +  E+    V        G P P S   +ID            +     GEI++ GP V
Sbjct: 306 LSAIEITREMVDNYTRLPIGYPKPDSPTYIID-------EDGKELSSGEQGEIIVTGPAV 358

Query: 513 TVGYFKNEEKTKEVYK-VDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSL 571
           + GY  N EKT E       KG   ++TGD+G +  D  L    R    +K   G  + L
Sbjct: 359 SKGYLNNPEKTAE--AFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKY-AGYRIEL 415

Query: 572 GKVEAALIVSPYVDN--IMMHADPFHS--YCVALVVASQPAVEEWAAKQGIV 619
             V   L  SP V +   +   +  H     +A +V      E +  +  + 
Sbjct: 416 EDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELT 467

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 89.9 bits (224), Expect = 5e-19
 Identities = 26/201 (12%), Positives = 63/201 (31%), Gaps = 16/201 (7%)

Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
           G  +  T+          A+   + G  K + V +   +R +++  + G  +     V  
Sbjct: 82  GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPA 141

Query: 162 YASLGEEALCYSLNETEVTTVIC-GSKELKKLVD-LSGQLDTVKHVICMDANIPSAVSSV 219
              L    + Y + +  +  ++C    ++ + VD    +   +             V   
Sbjct: 142 THMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKA-------KVGGD 194

Query: 220 EQSGR---WKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVL 276
              G     K    +          V      + D+ ++ ++SG+ G PK V   +   L
Sbjct: 195 VLEGWIDFRKELEESSPIFERPTGEVSTK---NEDICLVYFSSGTAGFPKMVEHDNTYPL 251

Query: 277 ATVSAVMTIVPDLGSKDVYLA 297
             +        ++    ++  
Sbjct: 252 GHILTAKYWQ-NVEDDGLHYT 271

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 63.0 bits (154), Expect = 2e-10
 Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 37/180 (20%)

Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTET---CAGGTFSEVDDSSVGRVGAP 477
            +++ +  G PL+ +         G  + +G+G TET    A   + E    S+G+   P
Sbjct: 342 TLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGK---P 398

Query: 478 LPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPN-----VTVGYFKNEEKTKEVYKV 529
            P   I+L+D  +G              GEIVI         + V Y K+ E+T+E +  
Sbjct: 399 TPGYKIELMD-RDG------RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHD 451

Query: 530 DDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVS---LG--KVEAALIVSPYV 584
                 +++TGD+  +  DG L  + R  DI+K       S   +G  +VE+ALI  P V
Sbjct: 452 G-----YYHTGDMAWMDEDGYLWFVGRADDIIK------TSGYKVGPFEVESALIQHPAV 500

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 83.3 bits (207), Expect = 5e-17
 Identities = 83/405 (20%), Positives = 137/405 (33%), Gaps = 98/405 (24%)

Query: 231 ADVQILGRENPVDADYPVSAD-VAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL 289
            D+    + N  + ++ V  D    I+YTSGSTG PKGV +T+  +++          +L
Sbjct: 124 KDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKW-AVEDFNL 182

Query: 290 GSKDVYLAYLPL---AHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVL 346
            +  V+L   P      V+++           ++  G  L        I K        L
Sbjct: 183 QTGQVFLNQAPFSFDLSVMDIYP---------SLVTGGTLWA------IDKDMIARPKDL 227

Query: 347 -------RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAW 399
                     V  S P+                                           
Sbjct: 228 FASLEQSDIQVWTSTPS------------------------------------------- 244

Query: 400 GLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADT-QRFINICLGAPIGQGYGLTETC 458
                    L+ +     +   ++  L  G  L  +  ++ I     A I   YG TE  
Sbjct: 245 ----FAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEAT 300

Query: 459 AGGTFSEVDDSSVGRV-----GAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGP 510
              T   V +  + +      G       + ++           +  P    GEIVI GP
Sbjct: 301 VAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-------EDGTIAPDGEKGEIVIVGP 353

Query: 511 NVTVGYFKNEEKTKEVYK-VDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYV 569
           +V+VGY  + E T++        G R + TGD G V  +G L    R    +KL HG  +
Sbjct: 354 SVSVGYLGSPELTEK--AFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKL-HGYRM 409

Query: 570 SLGKVEAALIVSPYVDN--IMMHAD-PFHSYCVALVVASQPAVEE 611
            L ++E  L    YV+   I+       + Y +A+VV  + + E+
Sbjct: 410 ELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEK 454

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 80.0 bits (198), Expect = 1e-15
 Identities = 93/493 (18%), Positives = 158/493 (32%), Gaps = 149/493 (30%)

Query: 120 ASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNV-TVVTIYASL--G---------- 166
           A  L + G  K   VA+                +R++  V+ I   L  G          
Sbjct: 503 ARRLQKHGAGKGSVVAL--------------YTKRSLELVIGILGVLKAGAAYLPVDPKL 548

Query: 167 -EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRW 225
            E+ + Y L ++    ++   +  ++  +L          + +D        + +     
Sbjct: 549 PEDRISYMLADSAAACLLTHQEMKEQAAELPYTGT----TLFIDDQTRFEEQASD----- 599

Query: 226 KITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI 285
                           +D +     D A IMYTSG+TG PKG + TH N+   V      
Sbjct: 600 ------------PATAIDPN-----DPAYIMYTSGTTGKPKGNITTHANIQGLVK--HVD 640

Query: 286 VPDLGSKDVYLAYLPLA---HVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGD 342
                 +D +L+    A      +  A         ++     L +        + T  D
Sbjct: 641 YMAFSDQDTFLSVSNYAFDAFTFDFYA---------SMLNAARLII------ADEHTLLD 685

Query: 343 ASVL-------RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSW 395
              L          VM +  A+ + +        D   GL          R +       
Sbjct: 686 TERLTDLILQENVNVMFATTALFNLL---TDAGEDWMKGL----------RCI------L 726

Query: 396 FGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLT 455
           FG  G E+     +   K   I+G                  + IN          YG T
Sbjct: 727 FG--G-ERASVPHV--RKALRIMGPG----------------KLIN---------CYGPT 756

Query: 456 ETCAGGTFSEVDDSSVGR----VGAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIA 508
           E     T   V D         +G P+  + + +++             P    GE+ I+
Sbjct: 757 EGTVFATAHVVHDLPDSISSLPIGKPISNASVYILN----EQS---QLQPFGAVGELCIS 809

Query: 509 GPNVTVGYFKNEEKTKEVYKVDD---KGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQH 565
           G  V+ GY    + TKE + +++    G   + TGD+ +   DG +E   R  D VK+  
Sbjct: 810 GMGVSKGYVNRADLTKEKF-IENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKI-R 867

Query: 566 GEYVSLGKVEAAL 578
           G  + L ++E  L
Sbjct: 868 GHRIELEEIEKQL 880

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 78.3 bits (194), Expect = 2e-15
 Identities = 87/525 (16%), Positives = 158/525 (30%), Gaps = 153/525 (29%)

Query: 124 AQLGHKKEERVAIFADTRAEWFVALQGCFRRNV-TVVTIYASL--G-----------EEA 169
            ++  +K+  + +                      +V+   S+  G            E 
Sbjct: 45  KRISGEKKSPILV--------------YGHMEPHMIVSFLGSVKAGHPYIPVDLSIPSER 90

Query: 170 LCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITS 229
           +   +  +    +I  +      V    Q       +  +  + +   S           
Sbjct: 91  IAKIIESSGAELLIHAAGLSIDAVGQQIQ------TVSAEELLENEGGS----------- 133

Query: 230 FADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL 289
                     +          +   I+YTSGSTG PKGV ++  N+ +     +     +
Sbjct: 134 ---------VSQDQWVKE--HETFYIIYTSGSTGNPKGVQISAANLQSFTDW-ICADFPV 181

Query: 290 GSKDVYLAYLPLA---HVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVL 346
               ++L   P +    V++L            +  G  L        + K       VL
Sbjct: 182 SGGKIFLNQAPFSFDLSVMDLYP---------CLQSGGTLHC------VTKDAVNKPKVL 226

Query: 347 -------RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAW 399
                     V  S P+ +                   ++                    
Sbjct: 227 FEELKKSGLNVWTSTPSFV-------------------QMC------------------- 248

Query: 400 GLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADT-QRFINICLGAPIGQGYGLTETC 458
            L    ++  +       +          G  L     +  +     A I   YG TE  
Sbjct: 249 -LMDPGFSQDLLPHADTFM--------FCGEVLPVSVAKALLERFPKAKIFNTYGPTEAT 299

Query: 459 AGGTFSEVDDSSVGR-----VGAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGP 510
              T  E+ +  + R     VG   P   I ++D           P+P    GEIVIAGP
Sbjct: 300 VAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD----EEG---QPLPEGEKGEIVIAGP 352

Query: 511 NVTVGYFKNEEKTKEVYK-VDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYV 569
           +V+ GY    E T++       +G   + TGD G +  DG +    R    +KL HG  +
Sbjct: 353 SVSRGYLGEPELTEK--AFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKL-HGYRM 408

Query: 570 SLGKVEAALIVSPYVDN--IMMHAD-PFHSYCVALVVASQPAVEE 611
            L ++E  +  S YV +  ++ +       Y +A +V  +   E+
Sbjct: 409 ELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEK 453

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 74.4 bits (182), Expect = 2e-14
 Identities = 42/300 (14%), Positives = 81/300 (27%), Gaps = 57/300 (19%)

Query: 226 KITSFADVQILG------RENPVDADYPVSAD---VAVIMYTSGSTGLPKGVMMTHGNVL 276
            + +  D++         R+ PV    P          +  + G+TG PK V+     + 
Sbjct: 58  DVKTINDLRQFSDISHCLRQEPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIE 117

Query: 277 ATVSAVMTIVPDLG--SKDVYLAYLPL-AHVLELVAENLIAGVGSAIGYGTPLTLTDTSS 333
           A +S  M+             LA +P   H++  + +   A     + +   +       
Sbjct: 118 ALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKER-ALRLGGMFFSIDIDPRWVKR 176

Query: 334 KIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAING 393
            + +G           ++  V   L                                   
Sbjct: 177 SLSEGDTATVRKYTHHLVDQVQNTLMNQDIRF---------------------------- 208

Query: 394 SWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFI--NICLGAPIGQG 451
                     +L  LL   +V   +   +  I  GG  L+ D  +FI   I         
Sbjct: 209 ----LVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSAS 264

Query: 452 YGLTETCAGGTFSEV-DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMP---RGEIVI 507
           YG T          +  +S      +  P     ++D            +    RG +++
Sbjct: 265 YGSTSALGVSRSLLITSESQQVIYDSFSPFITYDVVD-SITA-----QTVEYGERGNVIV 318

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 68.8 bits (169), Expect = 3e-12
 Identities = 56/211 (26%), Positives = 88/211 (41%), Gaps = 17/211 (8%)

Query: 96  FEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRN 155
           +E     + + ++Y +    +C FA+ L  LG KK + VAI+     E  VA+  C R  
Sbjct: 97  WEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 156

Query: 156 VTVVTIYASLGEEALCYSLNETEVTTVIC------GSK--ELKKLVD---LSGQLDTVKH 204
                I+     EA+   + ++    VI         +   LKK VD    +  + +V+H
Sbjct: 157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEH 216

Query: 205 VICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGL 264
           VI +     S +   E    W            +   ++A+ P+      I+YTSGSTG 
Sbjct: 217 VIVLK-RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPL-----FILYTSGSTGK 270

Query: 265 PKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295
           PKGV+ T G  L   +     V D    D+Y
Sbjct: 271 PKGVLHTTGGYLVYAATTFKYVFDYHPGDIY 301

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 65.3 bits (160), Expect = 4e-11
 Identities = 52/210 (24%), Positives = 85/210 (40%), Gaps = 15/210 (7%)

Query: 96  FEKLHLGEYEWLTYGQAFETICNFASGL-AQLGHKKEERVAIFADTRAEWFVALQGCFRR 154
           FE    G+   +TY +  E +C  A  L   +G +K + VA++     E  + L    R 
Sbjct: 103 FEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRI 162

Query: 155 NVTVVTIYASLGEEALCYSLNETEVTTVIC------GSK--ELKKLVDLS-GQLDTVKHV 205
                 ++A     +L   +N+ +   VI       G K  E K++VD +  +   V+HV
Sbjct: 163 GAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHV 222

Query: 206 ICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLP 265
           +        +V+          T     +      PVD++ P+      ++YTSGSTG P
Sbjct: 223 LVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPL-----FLLYTSGSTGAP 277

Query: 266 KGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295
           KGV  +    L      M    D   +DV+
Sbjct: 278 KGVQHSTAGYLLGALLTMRYTFDTHQEDVF 307

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 62.5 bits (153), Expect = 2e-10
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 232 DVQILGRENPVDADYPVSAD-VAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG 290
            V+ L       A    +AD +A I ++SG+TG PK +  TH  +               
Sbjct: 145 PVRHLPAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCL--GQSFLAFA 202

Query: 291 SKDVYLAYLPLA 302
            +  +L   PL+
Sbjct: 203 PQMRFLVNSPLS 214

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 57.5 bits (140), Expect = 8e-09
 Identities = 48/227 (21%), Positives = 85/227 (37%), Gaps = 26/227 (11%)

Query: 405 LWNLLVFSKVRAILGGRIRFILSGGAPLSADT-QRFINICLGAPIGQGYGLTETCAGGTF 463
           L+N LV      + G  +R +L+GG  LS    +R +       +  GYG TE       
Sbjct: 263 LFNTLVDLDPDCLGG--LRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCC 320

Query: 464 SEVDDSSVGR----VGAPLPCSFIKLIDWPEGGYLTSDSPMPR----GEIVIAGPNVTVG 515
             V D  +      +G  +  + + L+D     +      +      GEIV  G  +  G
Sbjct: 321 HVVTDDDLEEDDIPIGKAIAGTAVLLLD----EHGQ---EIAEPDRAGEIVAFGAGLAQG 373

Query: 516 YFKNEEKTKEVYKVDD----KGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSL 571
           Y  +  +T+  + V+     + +R + TGD  +    G L  I R    VKL +G  + L
Sbjct: 374 YRNDAARTRASF-VELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKL-NGYRLDL 431

Query: 572 GKVEAALIVSPYVDN--IMMHADPFHSYCVALVVASQPAVEEWAAKQ 616
             +E      P + +  +++         +        A  +   +Q
Sbjct: 432 PALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADASPQALLRQ 478

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 60.2 bits (147), Expect = 1e-09
 Identities = 39/219 (17%), Positives = 68/219 (31%), Gaps = 65/219 (29%)

Query: 103 EYEWLTYGQ----AFETICN-FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNV- 156
           E E LTY +    A     N  A    + G  K+  V I                 +++ 
Sbjct: 61  ENEQLTYHELNVKA-----NQLARIFIEKGIGKDTLVGI--------------MMEKSID 101

Query: 157 TVVTIYASL--G-----------EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVK 203
             + I A L  G           +E + Y L++++   ++        LV L   +    
Sbjct: 102 LFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKH----LVHLIHNIQFNG 157

Query: 204 HVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTG 263
            V   + +                            N          D+A ++YTSG+TG
Sbjct: 158 QVEIFEEDTIKIREG--------------------TNLHVPSKS--TDLAYVIYTSGTTG 195

Query: 264 LPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLA 302
            PKG M+ H  +            ++  KD    +  ++
Sbjct: 196 NPKGTMLEHKGISNLKVF-FENSLNVTEKDRIGQFASIS 233

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 45.2 bits (108), Expect = 6e-05
 Identities = 51/206 (24%), Positives = 85/206 (41%), Gaps = 39/206 (18%)

Query: 422 IRFILSGGAPLSADTQ-------RFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRV 474
           I+ +++ G+  S            +IN          YG TET    T       ++G  
Sbjct: 295 IQTLITAGSATSPSLVNKWKEKVTYIN---------AYGPTETTICATTWVATKETIGHS 345

Query: 475 ---GAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNVTVGYFKNEEKTKEVYK 528
              GAP+  + I ++D        +         GE+ I G  +  GY+K  E T +  K
Sbjct: 346 VPIGAPIQNTQIYIVD-------ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQ--K 396

Query: 529 -VDD---KGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYV 584
            VD+    G + + TGD  +  +DG +E + R  + VK+  G  V L +VE+ L+   Y+
Sbjct: 397 FVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYI 455

Query: 585 DN--IMMHAD-PFHSYCVALVVASQP 607
               + +H D     Y  A  V+ + 
Sbjct: 456 SETAVSVHKDHQEQPYLCAYFVSEKH 481

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 59.2 bits (144), Expect = 3e-09
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 11/88 (12%)

Query: 231 ADVQILGRENPVDADYPVSAD-VAVIMYTSGSTGLPKGVMMTHGNVLATVSA-------V 282
           + ++ L  ++  D       +  A ++YTSGSTG PKGV ++  N+ +   A       V
Sbjct: 155 SFIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNV 214

Query: 283 MTIVPDLGSKDVYLAYLPL---AHVLEL 307
                +LG    +L         H+ E+
Sbjct: 215 APKSLELGGVGKFLCLASRAFDVHIGEM 242

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 51.9 bits (125), Expect = 5e-07
 Identities = 45/200 (22%), Positives = 80/200 (40%), Gaps = 23/200 (11%)

Query: 423 RFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLP-- 479
            ++  GG  ++  TQ+  +      +   YG TE   G +   +  DS    +G PL   
Sbjct: 297 VYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDS 356

Query: 480 CSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRW 536
            + + L      G       + +   GE+VI G  V  GY    +        D  G + 
Sbjct: 357 VAHV-LAP----GSNE---HVKKGMAGELVIEGSLVANGYLNRPDAKGFC---DINGRKM 405

Query: 537 FYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDN--IMMHADP- 593
           + TGD+ ++ AD  +  + RK + VK+  G+ + LG+V   +      D   + +  +  
Sbjct: 406 YRTGDIVRMDADSSILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHP 464

Query: 594 --FHSYCVALVVASQPAVEE 611
                + V+ V +S  AV  
Sbjct: 465 GTSKQFLVSFVASSGAAVRG 484

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 3e-06
 Identities = 58/365 (15%), Positives = 117/365 (32%), Gaps = 83/365 (22%)

Query: 43  NCR----FTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEK 98
           +C+        + +  E    +  +        G   L  T  L+S++ E+    +  E+
Sbjct: 34  DCKDVQDMPKSILSKEE----IDHIIMSKDAVSGTLRLFWT--LLSKQEEMVQ--KFVEE 85

Query: 99  LHLGEYEWLTYGQAFETICNFASGLAQLGHKKEER----VAIFAD---TRAEWFVALQGC 151
           +    Y++L      +T     S + ++  ++ +R      +FA    +R + ++ L+  
Sbjct: 86  VLRINYKFLM--SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143

Query: 152 FR--RNVTVVTIY--ASLGEEALCYS-LNETEVTTVI-----------CGSKE--LKKLV 193
               R    V I      G+  +        +V   +           C S E  L+ L 
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 194 DLSGQLDTVKHVIC-MDANIPSAVSSVEQSGR---------------------WKITSFA 231
            L  Q+D          +NI   + S++   R                         +F 
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF- 262

Query: 232 DVQ----ILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI-V 286
           ++     +  R   V  D+  +A    I     S  L      T   V + +   +    
Sbjct: 263 NLSCKILLTTRFKQV-TDFLSAATTTHISLDHHSMTL------TPDEVKSLLLKYLDCRP 315

Query: 287 PDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVL 346
            DL  ++V L   P    L ++AE++  G+ +   +           K+    +   +VL
Sbjct: 316 QDL-PREV-LTTNPRR--LSIIAESIRDGLATWDNW-----KHVNCDKLTTIIESSLNVL 366

Query: 347 RPTVM 351
            P   
Sbjct: 367 EPAEY 371

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	672
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.95
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	98.98
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	98.98
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.64
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.58
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.45
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	92.68
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	91.97
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	91.61
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	81.23
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	80.93

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=6.6e-77  Score=658.94  Aligned_cols=498  Identities=22%  Similarity=0.302  Sum_probs=412.0

Q ss_pred             CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874           57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI  136 (672)
Q Consensus        57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i  136 (672)
                      ..|+.++|+++++++||++|+.+            .+           +.+||+||.++++++|++|+++|+++||+|+|
T Consensus        24 ~~tl~~~l~~~a~~~p~~~A~~~------------~~-----------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i   80 (539)
T 1mdb_A           24 GETFGDLLRDRAAKYGDRIAITC------------GN-----------THWSYRELDTRADRLAAGFQKLGIQQKDRVVV   80 (539)
T ss_dssp             SCCHHHHHHHHHHHHTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred             CCCHHHHHHHHHHHCCCCEEEEe------------CC-----------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            47999999999999999999986            33           37999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccch-----HHHHhhhcCCCCccEEEEecCC
Q 005874          137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL-----KKLVDLSGQLDTVKHVICMDAN  211 (672)
Q Consensus       137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~~~~~l~~ii~~~~~  211 (672)
                      +++|++++++++|||+++|+++||+++.++.+++.+++++++++++|++++..     ..+......++.++.++..++.
T Consensus        81 ~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (539)
T 1mdb_A           81 QLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA  160 (539)
T ss_dssp             CCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC
T ss_pred             EcCCcHHHHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCc
Confidence            99999999999999999999999999999999999999999999999987642     2333333445566666654432


Q ss_pred             CcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCC
Q 005874          212 IPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGS  291 (672)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~  291 (672)
                      ..                +.++.... ..+.......++++++|+|||||||.||||++||+++++.+......+ ++++
T Consensus       161 ~~----------------~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-~~~~  222 (539)
T 1mdb_A          161 EE----------------FLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-WLDH  222 (539)
T ss_dssp             TT----------------SEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCT
T ss_pred             cc----------------hhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-CCCC
Confidence            10                11111111 111122345679999999999999999999999999999988888777 8999


Q ss_pred             CcEEEEecChHhHHHHHH--HHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHH
Q 005874          292 KDVYLAYLPLAHVLELVA--ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVR  366 (672)
Q Consensus       292 ~d~~l~~~pl~h~~~~~~--~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~  366 (672)
                      +|++++++|++|.+++..  .+.++..|+++++   +++..+.+.           ++++++|+++++|+++..+.+...
T Consensus       223 ~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~  291 (539)
T 1mdb_A          223 STVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPL-----------IEREKVTITALVPPLAMVWMDAAS  291 (539)
T ss_dssp             TCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHH-----------HHHHTCSEEEECHHHHHHHHHHHH
T ss_pred             CCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHH-----------HHHcCCeEEEccHHHHHHHHhCcc
Confidence            999999999999999874  7788999999999   344444444           999999999999999999887533


Q ss_pred             HhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCC
Q 005874          367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGA  446 (672)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~  446 (672)
                      ...                                               ...++||.+++||+++++++.+.+++.+++
T Consensus       292 ~~~-----------------------------------------------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~  324 (539)
T 1mdb_A          292 SRR-----------------------------------------------DDLSSLQVLQVGGAKFSAEAARRVKAVFGC  324 (539)
T ss_dssp             HCC-----------------------------------------------CCCTTCCEEEEESSCCCHHHHTTHHHHTCS
T ss_pred             ccC-----------------------------------------------CCccceeEEEEcCCCCCHHHHHHHHHHhCC
Confidence            211                                               112489999999999999999999998999


Q ss_pred             ceecccCcccccccccccCCC-CCCCCccCCCcCC-eEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhh
Q 005874          447 PIGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLPC-SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK  524 (672)
Q Consensus       447 ~v~~~YG~TE~~~~~~~~~~~-~~~~~~~G~p~~~-~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~  524 (672)
                      +++++||+||++...+..... ....+++|.|+++ .+++|+| +++..+   +.|+.|||+|+||++++|||++|+.|+
T Consensus       325 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~  400 (539)
T 1mdb_A          325 TLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDV---KPGETGHLLTRGPYTIRGYYKAEEHNA  400 (539)
T ss_dssp             EEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEEC-TTSCBC---CTTCCEEEEEECTTSCSSCTTCHHHHH
T ss_pred             cEEEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEEC-CCCCCC---cCCCcceEEeeCcccchhhcCChhhhh
Confidence            999999999965433321111 1234689999975 5899999 666654   578999999999999999999999999


Q ss_pred             hhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEE
Q 005874          525 EVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVAL  601 (672)
Q Consensus       525 ~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~  601 (672)
                      +.|.    .+|||+|||+|++|+||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+
T Consensus       401 ~~f~----~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~  475 (539)
T 1mdb_A          401 ASFT----EDGFYRTGDIVRLTRDGYIVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVF  475 (539)
T ss_dssp             HHBC----TTSCEEEEEEEEECTTSCEEEEEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhcc----CCCCeecCceEEECCCCcEEEeccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEE
Confidence            9997    7899999999999999999999999999996 6999999999999999999999999997655   368999


Q ss_pred             EEcChhHH-HHHHHHcChhhhhcC-CCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHHHHhhhC
Q 005874          602 VVASQPAV-EEWAAKQGIVGKNAR-LDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLYE  672 (672)
Q Consensus       602 v~~~~~~~-~~~~~~~~~~~~~~~-L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~~ly~  672 (672)
                      |++++... .+...    ..++++ |+.|++|+.|+++++.|      +|++||++|++|++.|++.|+++|+
T Consensus       476 vv~~~~~~~~~~l~----~~l~~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~i~~~y~  538 (539)
T 1mdb_A          476 IIPRDEAPKAAELK----AFLRERGLAAYKIPDRVEFVESFP------QTGVGKVSKKALREAISEKLLAGFK  538 (539)
T ss_dssp             EEESSSCCCHHHHH----HHHHHTTCCGGGSCSEEEECSSCC------BCTTSCBCHHHHHHHHHHHHHTC--
T ss_pred             EEECCCCCCHHHHH----HHHHhCCCCcccCCCEEEEeccCC------CCCCcCEeHHHHHHHHHHHHhcccc
Confidence            99874321 11111    455565 99999999999999987      9999999999999999999999995

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=8.3e-77  Score=660.01  Aligned_cols=512  Identities=23%  Similarity=0.311  Sum_probs=390.8

Q ss_pred             CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874           57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI  136 (672)
Q Consensus        57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i  136 (672)
                      ..|+.++|+++++++||++|+.+.+           +.    +..+..+++||+||.++++++|.+|.++|+++||+|+|
T Consensus        18 ~~~l~~~l~~~a~~~p~~~A~~~~~-----------~~----~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i   82 (549)
T 3g7s_A           18 KISLADRIDAAAEKFGEKTAIISAE-----------PK----FPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGV   82 (549)
T ss_dssp             CCCTTHHHHHHHHHHTTSEEEEEES-----------SC----CCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             CCCHHHHHHHHHHhCCCceEEEeCC-----------Cc----ccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            4799999999999999999998742           11    00223458999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccc
Q 005874          137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV  216 (672)
Q Consensus       137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~  216 (672)
                      +++|++++++++|||+++|+++||+++.++.+++.+++++++++++|++....+.+.......+ ++.++..+..     
T Consensus        83 ~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----  156 (549)
T 3g7s_A           83 CIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG-VERVFVVGGE-----  156 (549)
T ss_dssp             ECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC-CCEEEEETCS-----
T ss_pred             ECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC-CcEEEEeCCC-----
Confidence            9999999999999999999999999999999999999999999999999998887777665554 5555554422     


Q ss_pred             cccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEE
Q 005874          217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL  296 (672)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l  296 (672)
                                ..++.++...+...........++++++|+|||||||.||||++||+++++.+..+...+ ++.++|+++
T Consensus       157 ----------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~  225 (549)
T 3g7s_A          157 ----------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-GLSHMDTIV  225 (549)
T ss_dssp             ----------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-CCCTTCEEE
T ss_pred             ----------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-CCCCCCEEE
Confidence                      123555555443322222222348999999999999999999999999999998888888 899999999


Q ss_pred             EecChHhHHHHHHHHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcC
Q 005874          297 AYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKG  373 (672)
Q Consensus       297 ~~~pl~h~~~~~~~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~  373 (672)
                      +.+|++|.+++...+.++..|+++++   +++..+.+.           ++++++|+++++|+++..|.+........  
T Consensus       226 ~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~~--  292 (549)
T 3g7s_A          226 GCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAEN-----------IEKYKGTFSWAVPPALNVLVNTLESSNKT--  292 (549)
T ss_dssp             CCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHHHHHSCCC--
T ss_pred             EeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHH-----------HHHhCCeEEEeCCHHHHHHHhhhhhhccc--
Confidence            99999999998888888999999998   455555555           99999999999999999998754332100  


Q ss_pred             chhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHH----hC---C
Q 005874          374 GLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC----LG---A  446 (672)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~----~~---~  446 (672)
                                                                 ...+++|.+++||+++++++.+.+.+.    ++   +
T Consensus       293 -------------------------------------------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~  329 (549)
T 3g7s_A          293 -------------------------------------------YDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRL  329 (549)
T ss_dssp             -------------------------------------------CCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTC
T ss_pred             -------------------------------------------CCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccc
Confidence                                                       112489999999999999999999887    56   8


Q ss_pred             ceecccCcccccccccccCCCC-CCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhh
Q 005874          447 PIGQGYGLTETCAGGTFSEVDD-SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKE  525 (672)
Q Consensus       447 ~v~~~YG~TE~~~~~~~~~~~~-~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~  525 (672)
                      ++++.||+||++++++...... ...+++|.|+++++++|+|.+++..+   +.|+.|||+|+||+++.|||++|+.|++
T Consensus       330 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~~  406 (549)
T 3g7s_A          330 RHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGREL---GVGESGEIVIRGPNIFKGYWKREKENQE  406 (549)
T ss_dssp             EEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEE---CTTCCEEEEEESTTSCSEETTCTTGGGT
T ss_pred             cccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCC---CCCCceEEEEECcchhhhhCCChhhhhh
Confidence            8999999999998776654433 45688999999999999996666665   4789999999999999999999999999


Q ss_pred             hcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEE
Q 005874          526 VYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALV  602 (672)
Q Consensus       526 ~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v  602 (672)
                      .|..+.++.+||+|||+|++|+||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|
T Consensus       407 ~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~v  485 (549)
T 3g7s_A          407 CWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFI  485 (549)
T ss_dssp             SEEECTTCCEEEEEEEEEEECTTSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEE
T ss_pred             hhhccCCCCceEccCcEEEEcCCceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEE
Confidence            98644445569999999999999999999999999998 6999999999999999999999999998765   3588999


Q ss_pred             EcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874          603 VASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD  666 (672)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~  666 (672)
                      +++++.......+....+++++|+.|++|+.|+++++.|      +|++||++|++|++++++.
T Consensus       486 v~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~~  543 (549)
T 3g7s_A          486 VLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELP------RTASGKLLRRLLREKEAEG  543 (549)
T ss_dssp             EECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC-------------------------
T ss_pred             EECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCC------CCCCcCEeHHHHHHHhhcc
Confidence            987652110001111166779999999999999999988      9999999999999998763

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=1.6e-76  Score=655.74  Aligned_cols=501  Identities=24%  Similarity=0.309  Sum_probs=413.6

Q ss_pred             CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874           55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV  134 (672)
Q Consensus        55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V  134 (672)
                      |...|+.++|.++++++||++|+.+.+          +|+           .+||+||.++++++|++|+++|+++||+|
T Consensus        19 p~~~~l~~~l~~~a~~~p~~~a~~~~~----------~~~-----------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V   77 (536)
T 3ni2_A           19 PKNLPLHSYVLENLSNHSSKPCLINGA----------NGD-----------VYTYADVELTARRVASGLNKIGIQQGDVI   77 (536)
T ss_dssp             CSSCCHHHHHTTTGGGSTTSEEEEETT----------TCC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred             CCCCcHHHHHHHHhhcCCCceEEEECC----------CCC-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence            455899999999999999999998621          233           79999999999999999999999999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcc
Q 005874          135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS  214 (672)
Q Consensus       135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~  214 (672)
                      +++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++....+.+.+..... .+ .++.++.... 
T Consensus        78 ~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~-  154 (536)
T 3ni2_A           78 MLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-DV-KVMCVDSAPD-  154 (536)
T ss_dssp             EEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-TC-EEEESSCCCT-
T ss_pred             EEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-Cc-eEEEecCCCC-
Confidence            99999999999999999999999999999999999999999999999999998877766654322 22 2444433211 


Q ss_pred             cccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhc---CCCCC
Q 005874          215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV---PDLGS  291 (672)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~---~~~~~  291 (672)
                                 ....++++....... .+.....++++++|+|||||||.||||++||+++++.+.......   ..+.+
T Consensus       155 -----------~~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~  222 (536)
T 3ni2_A          155 -----------GCLHFSELTQADENE-APQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHS  222 (536)
T ss_dssp             -----------TCEETHHHHTSCGGG-CCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCT
T ss_pred             -----------CccCHHHHhhccccc-cccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCC
Confidence                       123456665433222 233456789999999999999999999999999998877665421   16789


Q ss_pred             CcEEEEecChHhHHHHHH-HHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHH
Q 005874          292 KDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRK  367 (672)
Q Consensus       292 ~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~  367 (672)
                      +|++++.+|++|.+++.. .+.++..|+++++   +++..+.+.           ++++++|++.++|+++..+.+....
T Consensus       223 ~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~  291 (536)
T 3ni2_A          223 EDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGL-----------IEKYKVSIAPVVPPVMMSIAKSPDL  291 (536)
T ss_dssp             TCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHHHTCSCG
T ss_pred             CCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHH-----------HHHhCCeEEEccHHHHHHHHhCccc
Confidence            999999999999999866 6778999999998   344444444           9999999999999999988653111


Q ss_pred             hhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CC
Q 005874          368 KVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GA  446 (672)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~  446 (672)
                      .                                               ....++||.+++||+++++++.+.+++.+ ++
T Consensus       292 ~-----------------------------------------------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~  324 (536)
T 3ni2_A          292 D-----------------------------------------------KHDLSSLRMIKSGGAPLGKELEDTVRAKFPQA  324 (536)
T ss_dssp             G-----------------------------------------------GSCCTTCCEEEEESSCCCHHHHHHHHHHCTTS
T ss_pred             c-----------------------------------------------cCCCccceEEEECCCCCCHHHHHHHHHHCCCC
Confidence            0                                               11224899999999999999999999988 89


Q ss_pred             ceecccCccccccccccc-----CCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCch
Q 005874          447 PIGQGYGLTETCAGGTFS-----EVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEE  521 (672)
Q Consensus       447 ~v~~~YG~TE~~~~~~~~-----~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~  521 (672)
                      +++++||+||++++++..     .......+++|.|+++++++|+|.+++..+   +.|+.|||+|+|++++.||+++|+
T Consensus       325 ~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~---~~g~~GEl~v~g~~v~~GY~~~p~  401 (536)
T 3ni2_A          325 RLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASL---PRNQPGEICIRGDQIMKGYLNDPE  401 (536)
T ss_dssp             EEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBC---CTTCCEEEEEESTTSCSEETTCHH
T ss_pred             CccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCC---CCCCccEEEEeCcccchhhcCChh
Confidence            999999999998765543     122345688999999999999995555554   588999999999999999999999


Q ss_pred             hhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeE
Q 005874          522 KTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYC  598 (672)
Q Consensus       522 ~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~  598 (672)
                      .|++.|+    .+|||+|||+|++|+||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.+
T Consensus       402 ~t~~~~~----~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~  476 (536)
T 3ni2_A          402 ATSRTID----KEGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVP  476 (536)
T ss_dssp             HHHHHBC----TTSCEEEEEEEEECTTSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEE
T ss_pred             HHHhhcc----CCCceEcccEEEEcCCceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCcee
Confidence            9999998    8899999999999999999999999999998 6999999999999999999999999996544   458


Q ss_pred             EEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874          599 VALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       599 va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                      +|+|++.++...+..+.+  ..++++|+.|++|+.|+++++.|      +|++||++|++|+++|+.
T Consensus       477 ~a~vv~~~~~~~~~~~l~--~~l~~~l~~~~~p~~i~~v~~lP------~t~~GKi~R~~L~~~~~~  535 (536)
T 3ni2_A          477 VAFVVKSEKSQATEDEIK--QYISKQVIFYKRIKRVFFIEAIP------KAPSGKILRKNLKEKLAG  535 (536)
T ss_dssp             EEEEEECTTCCCCHHHHH--HHHHTTSCGGGCCSEEEECSCCC------BCTTSCBCHHHHHTC---
T ss_pred             EEEEEecCCCCCCHHHHH--HHHHHhccCCccccEEEEEecCC------CCCCCCeeHHHHHHHhcc
Confidence            999998765322111111  66778999999999999999988      999999999999988764

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=1.2e-76  Score=657.28  Aligned_cols=502  Identities=24%  Similarity=0.319  Sum_probs=386.1

Q ss_pred             CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874           57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI  136 (672)
Q Consensus        57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i  136 (672)
                      ..|+.++|+++++++||++|+.+.+          +         +..+++||+||.++++++|.+|+++|+++||+|++
T Consensus        17 ~~~l~~~l~~~a~~~p~~~a~~~~~----------~---------~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i   77 (541)
T 1v25_A           17 ELNLWDFLERAAALFGRKEVVSRLH----------T---------GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVAT   77 (541)
T ss_dssp             CCCTHHHHHHHHHHSTTCEEEEECT----------T---------SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             CCCHHHHHHHHHHhCCCceEEEEec----------C---------CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            4689999999999999999998631          1         13358999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccc
Q 005874          137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV  216 (672)
Q Consensus       137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~  216 (672)
                      +++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+......++.++.++.++.....  
T Consensus        78 ~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  155 (541)
T 1v25_A           78 LGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE--  155 (541)
T ss_dssp             ECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCT--
T ss_pred             EcCCcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCc--
Confidence            999999999999999999999999999999999999999999999999998888777776667777777776543211  


Q ss_pred             cccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHH--HhhcCCCCCCcE
Q 005874          217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV--MTIVPDLGSKDV  294 (672)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~~d~  294 (672)
                               ...+++++......    .....++++++|+|||||||.||||++||+++++.....  ...+ .++++|+
T Consensus       156 ---------~~~~~~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~d~  221 (541)
T 1v25_A          156 ---------GYLAYEEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-ALSEKDV  221 (541)
T ss_dssp             ---------TCEEHHHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-CCCTTCE
T ss_pred             ---------ccccHHHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-cCCCCCE
Confidence                     12345555432211    133457899999999999999999999999998776653  2334 7889999


Q ss_pred             EEEecChHhHHHHHHHHHHhHhCcEEeeC----CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhh
Q 005874          295 YLAYLPLAHVLELVAENLIAGVGSAIGYG----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD  370 (672)
Q Consensus       295 ~l~~~pl~h~~~~~~~~~~l~~G~~i~~~----~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~  370 (672)
                      +++++|++|.+++...+.++..|+++++.    ++..+.+.           ++++++|+++++|+++..|.+...... 
T Consensus       222 ~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~-  289 (541)
T 1v25_A          222 VLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVEL-----------FDGEGVTFTAGVPTVWLALADYLESTG-  289 (541)
T ss_dssp             EEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHHHHHHT-
T ss_pred             EEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHH-----------HHhcCeeEEecchHHHHHHHhhhhccC-
Confidence            99999999999987778889999999983    34444444           999999999999999999987543221 


Q ss_pred             hcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceec
Q 005874          371 AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQ  450 (672)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~  450 (672)
                                                                    ...++||.+++||+++++++.+.+ ..+++++++
T Consensus       290 ----------------------------------------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~  322 (541)
T 1v25_A          290 ----------------------------------------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQ  322 (541)
T ss_dssp             ----------------------------------------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEE
T ss_pred             ----------------------------------------------CcchhccEEEECCCCCCHHHHHHH-HHhCCceee
Confidence                                                          112489999999999999999999 567999999


Q ss_pred             ccCcccccccccccCCCC-----------CCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCC
Q 005874          451 GYGLTETCAGGTFSEVDD-----------SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKN  519 (672)
Q Consensus       451 ~YG~TE~~~~~~~~~~~~-----------~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~  519 (672)
                      +||+||+++.++......           ...+++|.|+|+++++|+| +++..++ .+.++.|||+|+||+++.|||++
T Consensus       323 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~-~~~~~~GEl~v~g~~v~~GY~~~  400 (541)
T 1v25_A          323 GYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVP-KDGKALGEVQLKGPWITGGYYGN  400 (541)
T ss_dssp             EEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCC-SSSCCCEEEEEESTTSBSSCBTC
T ss_pred             cccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCC-CCCCcceEEEEeCcchhccccCC
Confidence            999999987766543321           1247899999999999999 7776654 11236899999999999999999


Q ss_pred             chhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---C
Q 005874          520 EEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---S  596 (672)
Q Consensus       520 ~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~  596 (672)
                      |+.|++.|.    .+|||+|||+|++|+||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +
T Consensus       401 p~~t~~~f~----~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~  475 (541)
T 1v25_A          401 EEATRSALT----PDGFFRTGDIAVWDEEGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQE  475 (541)
T ss_dssp             HHHHHTTBC----TTSCEEEEEEEEECTTCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSE
T ss_pred             hhhhhhhcc----CCCCeEcCCEEEEcCCceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCc
Confidence            999999997    6899999999999999999999999999997 6999999999999999999999999997665   4


Q ss_pred             eEEEEEEcChhHHHHHHHHcChhhhhc-CCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHHHH
Q 005874          597 YCVALVVASQPAVEEWAAKQGIVGKNA-RLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLA  668 (672)
Q Consensus       597 ~~va~v~~~~~~~~~~~~~~~~~~~~~-~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~  668 (672)
                      .++|+|+++... .+  .+.....+.+ +|+.|++|+.++++++.|      +|++||++|++|++.|++.++
T Consensus       476 ~~~a~vv~~~~~-~~--~~~l~~~~~~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~~~  539 (541)
T 1v25_A          476 RPLAVVVPRGEK-PT--PEELNEHLLKAGFAKWQLPDAYVFAEEIP------RTSAGKFLKRALREQYKNYYG  539 (541)
T ss_dssp             EEEECC----------------------CCCTTTSCSBC--------------------CCTTHHHHSTTSSC
T ss_pred             eEEEEEEECCCC-CC--HHHHHHHHHhccCccccCCcEEEEeCCCC------CCCccCeeHHHHHHHHHHhhC
Confidence            689999886221 11  1111245556 899999999999999887      999999999999999876543

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=1.6e-76  Score=656.82  Aligned_cols=508  Identities=23%  Similarity=0.288  Sum_probs=417.6

Q ss_pred             CCCCCHHH-HHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCE
Q 005874           55 EGISTLAE-LFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEER  133 (672)
Q Consensus        55 ~~~~tl~~-~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~  133 (672)
                      +...|+.+ ++.++++++ |++|+.+..          ++           +.+||+||.++++++|.+|++.|+++||+
T Consensus        22 p~~~~l~~~~l~~~~~~~-~~~A~~~~~----------~~-----------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~   79 (548)
T 2d1s_A           22 EGSAGTQLRKYMERYAKL-GAIAFTNAV----------TG-----------VDYSYAEYLEKSCCLGKALQNYGLVVDGR   79 (548)
T ss_dssp             SSCHHHHHHHHHHHHHHH-TCEEEEETT----------TC-----------CEEEHHHHHHHHHHHHHHHHHHTCCTTCE
T ss_pred             CCcCcHHHHHHHhhhccc-CCceEEEcC----------CC-----------CEeeHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence            34458999 898999999 999998521          22           37999999999999999999999999999


Q ss_pred             EEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCc
Q 005874          134 VAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIP  213 (672)
Q Consensus       134 V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~  213 (672)
                      |+|+++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+......++....++.++....
T Consensus        80 V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (548)
T 2d1s_A           80 IALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVD  159 (548)
T ss_dssp             EEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSC
T ss_pred             EEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccc
Confidence            99999999999999999999999999999999999999999999999999999887777665555554556666543211


Q ss_pred             ccccccccCCCeEEEeHHHHHhcccCCCCCCCCC------CCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhh--
Q 005874          214 SAVSSVEQSGRWKITSFADVQILGRENPVDADYP------VSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI--  285 (672)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~--  285 (672)
                      .        .  ...+|+++.........+....      .++++++|+|||||||.||||++||+++++.+......  
T Consensus       160 ~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~  229 (548)
T 2d1s_A          160 Y--------R--GYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY  229 (548)
T ss_dssp             B--------T--TBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT
T ss_pred             c--------c--ccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh
Confidence            0        0  1124666654432110111111      23899999999999999999999999999988877665  


Q ss_pred             -cCCCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHH
Q 005874          286 -VPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR  360 (672)
Q Consensus       286 -~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~  360 (672)
                       + .++++|++++++|++|.+++.. .+.++ .|+++++   +++..+.+.           ++++++|+++++|+++..
T Consensus       230 ~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~  296 (548)
T 2d1s_A          230 GN-QVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKT-----------LQDYKCTSVILVPTLFAI  296 (548)
T ss_dssp             SC-CCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHH-----------HHHTTEEEEEECHHHHHH
T ss_pred             cc-CCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHH-----------HHHcCCcEEEecHHHHHH
Confidence             4 7889999999999999999887 45556 9999998   345555555           999999999999999998


Q ss_pred             HHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHH
Q 005874          361 VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFI  440 (672)
Q Consensus       361 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~  440 (672)
                      |.+.....                                               ....++||.+++||+++++++.+.+
T Consensus       297 l~~~~~~~-----------------------------------------------~~~l~~lr~i~~gG~~l~~~~~~~~  329 (548)
T 2d1s_A          297 LNKSELLN-----------------------------------------------KYDLSNLVEIASGGAPLSKEVGEAV  329 (548)
T ss_dssp             HHHCSCGG-----------------------------------------------GSCCTTCCEEEECSSCCCHHHHHHH
T ss_pred             HHhCcccc-----------------------------------------------cccccceeEEEEcCccCCHHHHHHH
Confidence            87521100                                               0122489999999999999999999


Q ss_pred             HHHh-CCceecccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCC
Q 005874          441 NICL-GAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKN  519 (672)
Q Consensus       441 ~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~  519 (672)
                      ++.+ +++++++||+||++..++.........+++|.|+|+++++|+|++++..+   ++|+.|||+|+|++++.|||++
T Consensus       330 ~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~---~~g~~GEl~v~g~~v~~GY~~~  406 (548)
T 2d1s_A          330 ARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSL---GPNRRGEVCVKGPMLMKGYVNN  406 (548)
T ss_dssp             HHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTCCBEECTTCEEEEECTTTCCBC---CTTCCEEEEEESTTSCSEETTC
T ss_pred             HHHcCCCceeeccccccccceeeecCcccCCCCCCCccCCCceEEEEeCCcCccC---CCCCCeEEEECCHHHhhhhcCC
Confidence            9988 68899999999998776665444456689999999999999995566554   4789999999999999999999


Q ss_pred             chhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---C
Q 005874          520 EEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---S  596 (672)
Q Consensus       520 ~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~  596 (672)
                      |+.|++.|+    .+|||+|||+|++|+||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +
T Consensus       407 ~~~t~~~f~----~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~  481 (548)
T 2d1s_A          407 PEATKELID----EEGWLHTGDIGYYDEEKHFFIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGE  481 (548)
T ss_dssp             HHHHHHHBC----TTSCEEEEEEEEECTTCCEEEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEE
T ss_pred             hHHhhhccc----CCcEEEccCEEEEcCCCeEEEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCe
Confidence            999999997    7899999999999999999999999999997 6999999999999999999999999998655   3


Q ss_pred             eEEEEEEcChhHHHHHHHHcChhhhhcCCCCCccee-EEEEeecCCCCCCCccccccccChHHHHHHHHHHHHhh
Q 005874          597 YCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPA-KIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARL  670 (672)
Q Consensus       597 ~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~-~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~~l  670 (672)
                      .++|+|+++++...+..+  ....++++|+.|++|+ .|+++++.|      +|++||++|++|+++|++.|++|
T Consensus       482 ~~~a~vv~~~~~~~~~~~--l~~~~~~~l~~~~~p~~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~i~~~  548 (548)
T 2d1s_A          482 LPGAVVVLESGKNMTEKE--VMDYVASQVSNAKRLRGGVRFVDEVP------KGLTGKIDGRAIREILKKPVAKM  548 (548)
T ss_dssp             EEEEEEEECTTCCCCHHH--HHHHHHTTSCGGGSCTTCEEECSSCC------BCTTSCBCHHHHHHHHHSCC---
T ss_pred             eeEEEEEEcCCCCCCHHH--HHHHHHHhccccccccccEEEccCCC------CCCcchhHHHHHHHHHhhhhhcC
Confidence            689999987653211111  1166778999999999 999999987      99999999999999999998876

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=1.3e-75  Score=652.68  Aligned_cols=506  Identities=17%  Similarity=0.179  Sum_probs=400.7

Q ss_pred             CCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 005874           56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA  135 (672)
Q Consensus        56 ~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~  135 (672)
                      .++..+++|+++|+++||++|+.+.+          +        .|+.+.+||+||.++++++|++|+++|+++||+|+
T Consensus        54 ~~n~~~~~l~~~a~~~pd~~Al~~~~----------~--------~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~  115 (580)
T 3etc_A           54 NFNFAYDVVDVYARDSPEKLAMIWCD----------D--------YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVM  115 (580)
T ss_dssp             SCCHHHHTHHHHHHHCTTCEEEEEEE----------S--------SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEE
T ss_pred             cchHHHHHHHHHHhhCCCCEEEEEEc----------C--------CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            34456699999999999999999742          1        12446899999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccch--HHHHhhhcCCCCc-cEEEEecCCC
Q 005874          136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL--KKLVDLSGQLDTV-KHVICMDANI  212 (672)
Q Consensus       136 i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~l~~~~~~~~~l-~~ii~~~~~~  212 (672)
                      |+++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++.+..  ..+.+....++.+ ..++.++...
T Consensus       116 l~~~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (580)
T 3etc_A          116 LTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDV  195 (580)
T ss_dssp             EECTTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSC
T ss_pred             EEcCCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCcc
Confidence            999999999999999999999999999999999999999999999999988754  5555555444544 4555554331


Q ss_pred             cccccccccCCCeEEEeHHHHHhcccCCCCCC---CCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCC
Q 005874          213 PSAVSSVEQSGRWKITSFADVQILGRENPVDA---DYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL  289 (672)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~  289 (672)
                      .           ..+.++.+...........+   ....++|+++|+|||||||.||||+++|.++++.+......+ .+
T Consensus       196 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-~~  263 (580)
T 3etc_A          196 L-----------EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-NV  263 (580)
T ss_dssp             C-----------TTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-CC
T ss_pred             c-----------cccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-CC
Confidence            1           11345666655443322212   246789999999999999999999999999988877666556 88


Q ss_pred             CCCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeC-----CcccccCchhhhhcccccccccccceeeecchHHHHHHHH
Q 005874          290 GSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG-----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRD  363 (672)
Q Consensus       290 ~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~-----~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~  363 (672)
                      .++|++++.+|+.|..+++. .+.++..|+++++.     ++..+.+.           ++++++|+++++|++++.|.+
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~  332 (580)
T 3etc_A          264 EDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEK-----------ASKYGVTTFCAPPTIYRFLIK  332 (580)
T ss_dssp             CTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHHHT
T ss_pred             CCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH-----------HHHHCCeEEEccHHHHHHHHh
Confidence            99999999999999988876 67789999999873     33344444           999999999999999988865


Q ss_pred             HHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHH
Q 005874          364 GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC  443 (672)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~  443 (672)
                      ...                                                .....++||.+++||+++++++.+.+++.
T Consensus       333 ~~~------------------------------------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~  364 (580)
T 3etc_A          333 EDL------------------------------------------------SHYNFSTLKYAVVAGEPLNPEVFNRFLEF  364 (580)
T ss_dssp             SCC---------------------------------------------------CCTTCCEEEECSSCCCHHHHHHHHHH
T ss_pred             ccc------------------------------------------------ccCCCccceEEEEccCCCCHHHHHHHHHH
Confidence            200                                                01123589999999999999999999999


Q ss_pred             hCCceecccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEcc-----CcccccccC
Q 005874          444 LGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAG-----PNVTVGYFK  518 (672)
Q Consensus       444 ~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g-----~~v~~gY~~  518 (672)
                      +|++++++||+||+++.++.........+++|.|+|+++++|+| +++..+   ++|+.|||+|+|     ++++.||++
T Consensus       365 ~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~g~~~---~~g~~GEl~v~~~~g~~~~~~~gY~~  440 (580)
T 3etc_A          365 TGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMD-RDGRLC---EVGEEGEIVINTMEGKPVGLFVHYGK  440 (580)
T ss_dssp             HSCCCEEEECCTTSSCCEECCTTSCCCTTCCBEECTTCEEEEEC-TTSCBC---CTTCCEEEEEECTTCCCTTCCCEETT
T ss_pred             hCCeEecccccccccceeecCCCCCCCCCccccCCCCCEEEEEC-CCCCCC---CCCCceEEEEecCCCCCCeeeccccC
Confidence            99999999999999877766665666779999999999999999 677654   588999999997     789999999


Q ss_pred             CchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---
Q 005874          519 NEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---  595 (672)
Q Consensus       519 ~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---  595 (672)
                      +|+.|++.|     .+|||+|||+|++|+||.|+|+||+||+||++ |++|+|.+||++|.+||+|.+|+|++.+++   
T Consensus       441 ~p~~t~~~f-----~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~-G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g  514 (580)
T 3etc_A          441 DPERTEETW-----HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTS-GYKVGPFEVESALIQHPAVLECAITGVPDPVRG  514 (580)
T ss_dssp             CHHHHHHHE-----ETTEEEEEEEEEECTTSCEEEEEESSSCEEET-TEEECHHHHHHHHTTSTTEEEEEEEEEEETTTE
T ss_pred             CHhHHHhhc-----CCCEEecCcEEEECCCCcEEEEecCCCEEEEC-CEEECHHHHHHHHHhCCCeeeEEEEeeeccCCC
Confidence            999999999     68999999999999999999999999999985 999999999999999999999999997765   


Q ss_pred             CeEEEEEEcChhHHH-HHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874          596 SYCVALVVASQPAVE-EWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD  666 (672)
Q Consensus       596 ~~~va~v~~~~~~~~-~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~  666 (672)
                      +.++|+|++.++... +...+.....++++|+.|++|+.|+++++.|      +|++|||+|++|+++++++
T Consensus       515 ~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP------~t~sGKi~R~~Lr~~~~~q  580 (580)
T 3etc_A          515 QVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELP------KTISGKIRRVEIRDKDQSQ  580 (580)
T ss_dssp             EEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC---------------------------
T ss_pred             cEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCC------CCCCcCCcHHHHHhHhhcC
Confidence            358899998775321 1111111266778999999999999999987      9999999999999998763

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=3.5e-76  Score=655.19  Aligned_cols=511  Identities=21%  Similarity=0.261  Sum_probs=335.9

Q ss_pred             CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874           57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI  136 (672)
Q Consensus        57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i  136 (672)
                      ..|+.++|.+.++++|+++|+....          ++.        ..+.+||+||.++++++|++|+++|+++||+|+|
T Consensus        19 ~~tl~~~l~~~a~~~p~~~a~~a~~----------~~~--------~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i   80 (550)
T 3rix_A           19 DGTAGEQLHKAMKRYALVPGTIAFT----------DAH--------IEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVV   80 (550)
T ss_dssp             CSCHHHHHHHHHHHHHTSTTCEEEE----------ETT--------TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred             cCCHHHHHHHHHHhCCCCceEEEee----------ecC--------CCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence            3799999999999999999986321          111        1147999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccc
Q 005874          137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV  216 (672)
Q Consensus       137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~  216 (672)
                      +++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.......+.++.++.++...... 
T Consensus        81 ~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  159 (550)
T 3rix_A           81 CSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQ-  159 (550)
T ss_dssp             ECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBT-
T ss_pred             EcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCcccc-
Confidence            9999999999999999999999999999999999999999999999999998888888877788888888876543211 


Q ss_pred             cccccCCCeEEEeHHHHHhcccCCC------CCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhc--CC
Q 005874          217 SSVEQSGRWKITSFADVQILGRENP------VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV--PD  288 (672)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~  288 (672)
                               ...++.++........      .+.....++++++|+|||||||.||||++||+++++.+......+  ..
T Consensus       160 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~  230 (550)
T 3rix_A          160 ---------GFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQ  230 (550)
T ss_dssp             ---------TBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCC
T ss_pred             ---------CcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhcccc
Confidence                     1234555554332211      111223457899999999999999999999999998887766542  26


Q ss_pred             CCCCcEEEEecChHhHHHHHHHHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHH
Q 005874          289 LGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGV  365 (672)
Q Consensus       289 ~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~  365 (672)
                      +.++|++++++|++|.+++...+.++..|+++++   +++..+.+.           ++++++|+++++|+++..+.+..
T Consensus       231 ~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~  299 (550)
T 3rix_A          231 IIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRS-----------LQDYKIQSALLVPTLFSFFAKST  299 (550)
T ss_dssp             CCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHTTCSEEEECHHHHHHHHHCC
T ss_pred             CCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHH-----------HHHcCCeEEEeCcHHHHHHHhCc
Confidence            7899999999999999999888889999999999   445555555           99999999999999999887632


Q ss_pred             HHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhC
Q 005874          366 RKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLG  445 (672)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~  445 (672)
                      ...                                               ....++||.+++||+++++++.+.+++.++
T Consensus       300 ~~~-----------------------------------------------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~  332 (550)
T 3rix_A          300 LID-----------------------------------------------KYDLSNLHEIASGGAPLSKEVGEAVAKRFH  332 (550)
T ss_dssp             GGG-----------------------------------------------GSCCTTCCEEEECSSCCCHHHHHHHHHHTT
T ss_pred             ccc-----------------------------------------------ccCcccccEEEEecCCCCHHHHHHHHHHcC
Confidence            110                                               112248999999999999999999999988


Q ss_pred             Cc-eecccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhh
Q 005874          446 AP-IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK  524 (672)
Q Consensus       446 ~~-v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~  524 (672)
                      .. ++++||+||+++.++.........+++|.|+|+++++|+|.+++..+   ++|+.|||+|+||+++.|||++|+.|+
T Consensus       333 ~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~  409 (550)
T 3rix_A          333 LPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTL---GVNQRGELCVRGPMIMSGYVNNPEATN  409 (550)
T ss_dssp             CSCCEEEEECGGGSSEEEECCTTCCCTTEEEEECTTCEEEEECTTTCCBC---CTTCCEEEEEESTTSCSEETTCHHHHH
T ss_pred             CCccccccCcCccccceecCCCCCCCCCCcccccCCcEEEEEeCCCCcCC---CCCCCeEEEEeCCCcchhhcCChhhhh
Confidence            75 89999999999888777766677799999999999999995555554   588999999999999999999999999


Q ss_pred             hhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEE
Q 005874          525 EVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVAL  601 (672)
Q Consensus       525 ~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~  601 (672)
                      +.|+    .+|||+|||+|++++||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+
T Consensus       410 ~~~~----~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~  484 (550)
T 3rix_A          410 ALID----KDGWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAV  484 (550)
T ss_dssp             HHBC----TTSCEEEEEEEEECTTCCEEEC--------------------------------------------------
T ss_pred             hhcC----CCCCeecCcEEEEeCCceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEE
Confidence            9997    8899999999999999999999999999998 6999999999999999999999999998765   358889


Q ss_pred             EEcChhHHHHHHHHcChhhhhcCCCCCccee-EEEEeecCCCCCCCccccccccChHHHHHHHHHHHHh
Q 005874          602 VVASQPAVEEWAAKQGIVGKNARLDKFEIPA-KIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLAR  669 (672)
Q Consensus       602 v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~-~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~~  669 (672)
                      |++.++...+..  .....++++|+.++.|. .|+++++.|      +|++||++|++|++++.+....
T Consensus       485 vv~~~~~~~~~~--~l~~~~~~~l~~~~~~~~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~~~~  545 (550)
T 3rix_A          485 VVLEHGKTMTEK--EIVDYVASQVTTAKKLRGGVVFVDEVP------KGLTGKLDARKIREILIKAKKG  545 (550)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             EEecCCCCCCHH--HHHHHHHHhcccccccCCceEEEeecC------CCCCcceeHHHHHHHHHhhccc
Confidence            988776543322  22266778899886665 688999987      9999999999999999876543

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=1.6e-75  Score=644.57  Aligned_cols=495  Identities=24%  Similarity=0.318  Sum_probs=409.4

Q ss_pred             CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874           55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV  134 (672)
Q Consensus        55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V  134 (672)
                      +...|+.++|+++++++||++|+.+.            +         ..+.+||+||.++++++|.+|.++|+++||+|
T Consensus        13 ~~~~~l~~~l~~~a~~~p~~~A~~~~------------~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V   71 (517)
T 3r44_A           13 DKMKNIGWMLRQRATVSPRLQAYVEP------------S---------TDVRMTYAQMNALANRCADVLTALGIAKGDRV   71 (517)
T ss_dssp             GGGGCHHHHHHHHHHHSTTSEEEEEG------------G---------GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred             ccccCHHHHHHHHHHhCCCCeEEEeC------------C---------cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEE
Confidence            56689999999999999999999862            1         22479999999999999999999999999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcc
Q 005874          135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS  214 (672)
Q Consensus       135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~  214 (672)
                      +|+++|++++++++|||+++|+++||+++.++.+++.+++++++++++|++....+.+.......+....++.+..    
T Consensus        72 ~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~----  147 (517)
T 3r44_A           72 ALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIG----  147 (517)
T ss_dssp             EEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEE----
T ss_pred             EEEcCCCHHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccC----
Confidence            9999999999999999999999999999999999999999999999999999888777665544332221111100    


Q ss_pred             cccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcE
Q 005874          215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV  294 (672)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~  294 (672)
                                  ..++.+...... ...+.....++++++|+|||||||.||||++||+++++.+......+ +++++|+
T Consensus       148 ------------~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~  213 (517)
T 3r44_A          148 ------------ADSLAERLRSAA-ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-DVRYRDR  213 (517)
T ss_dssp             ------------HHHHHHHHHHCC-CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-CCCTTCE
T ss_pred             ------------cccHHHHhhccC-cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-CCCCCCE
Confidence                        011233332222 12233456789999999999999999999999999999999988888 9999999


Q ss_pred             EEEecChHhHHHHHHHHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhh
Q 005874          295 YLAYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDA  371 (672)
Q Consensus       295 ~l~~~pl~h~~~~~~~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~  371 (672)
                      +++.+|++|.+++...+.++..|+++++   +++..+.+.           ++++++|++.++|+++..+.+....    
T Consensus       214 ~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~----  278 (517)
T 3r44_A          214 LLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSL-----------IVEERVCIGGAVPAILNFMRQVPEF----  278 (517)
T ss_dssp             EEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHSHHH----
T ss_pred             EEEeCchHHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHH-----------HHHhCCeEEEeHHHHHHHHHhCccc----
Confidence            9999999999999886666669999998   455555555           9999999999999999988763211    


Q ss_pred             cCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecc
Q 005874          372 KGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQG  451 (672)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~  451 (672)
                                                                 .....++||.+++||+++++++.+.+... +++++++
T Consensus       279 -------------------------------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~  314 (517)
T 3r44_A          279 -------------------------------------------AELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQG  314 (517)
T ss_dssp             -------------------------------------------HHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEE
T ss_pred             -------------------------------------------ccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEe
Confidence                                                       12233589999999999999999999987 9999999


Q ss_pred             cCcccccccccccCCC--CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhccc
Q 005874          452 YGLTETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV  529 (672)
Q Consensus       452 YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~  529 (672)
                      ||+||+++.++.....  ....+++|.|.++++++|+| +++...+   .| .|||+|+||+++.|||++|+.|++.|  
T Consensus       315 YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~---~g-~GEl~v~g~~v~~GY~~~p~~t~~~f--  387 (517)
T 3r44_A          315 YALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVIRE---HG-EGEVVIKSDILLKEYWNRPEATRDAF--  387 (517)
T ss_dssp             EECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCEES---SE-EEEEEEEETTSCSEETTCHHHHHHTE--
T ss_pred             ecccccccceeecCCccccccCCCCCcCCCCeEEEEEC-CCCCCCC---CC-CeEEEEeCcchhhhhCCChhhhHhhh--
Confidence            9999998876654433  34568999999999999999 6665543   55 79999999999999999999999999  


Q ss_pred             CCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCCC---eEEEEEEcCh
Q 005874          530 DDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHS---YCVALVVASQ  606 (672)
Q Consensus       530 ~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~~---~~va~v~~~~  606 (672)
                         .+|||+|||+|++++||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++.   .++|+|+...
T Consensus       388 ---~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~  463 (517)
T 3r44_A          388 ---DNGWFRTGDIGEIDDEGYLYIKDRLKDMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQ  463 (517)
T ss_dssp             ---ETTEEEEEEEEEECTTSCEEEEECGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECT
T ss_pred             ---cCCCEecceeEEEcCCeeEEEecCCcCEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCC
Confidence               6899999999999999999999999999997 69999999999999999999999999976553   4667774433


Q ss_pred             hHH-HHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHHHH
Q 005874          607 PAV-EEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLA  668 (672)
Q Consensus       607 ~~~-~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~  668 (672)
                      ... .+...    ..++++|+.|++|+.|+++++.|      +|++||++|++|+++|++.+.
T Consensus       464 ~~~~~~~l~----~~l~~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~~~~  516 (517)
T 3r44_A          464 NEVSEQQIV----EYCGTRLARYKLPKKVIFAEAIP------RNPTGKILKTVLREQYSATVP  516 (517)
T ss_dssp             TTCCHHHHH----HHHHHHSCGGGSCSEEEECSCCC------BCTTCCBCHHHHHHHHGGGCC
T ss_pred             CCCCHHHHH----HHHHHhCCCCCCCCEEEEECCCC------CCCCcCccHHHHHHHHHhhcc
Confidence            221 11122    66778999999999999999987      999999999999999987653

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=1.3e-75  Score=642.95  Aligned_cols=490  Identities=25%  Similarity=0.349  Sum_probs=403.6

Q ss_pred             HHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Q 005874           62 ELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTR  141 (672)
Q Consensus        62 ~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns  141 (672)
                      ++|++.++++||++|+.....         +|+           ++||+||.++++++|++|+++|+++||+|+++++|+
T Consensus         4 ~l~~~~a~~~p~~~a~~~~~~---------~~~-----------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~   63 (503)
T 4fuq_A            4 NLFARLFDKLDDPHKLAIETA---------AGD-----------KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKS   63 (503)
T ss_dssp             CHHHHHHSCCSCTTSEEEEET---------TCC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSC
T ss_pred             hHHHHHHHhCCCCceEEEecC---------CCc-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC
Confidence            578899999999999986321         344           799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCccccccccc
Q 005874          142 AEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQ  221 (672)
Q Consensus       142 ~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~  221 (672)
                      +++++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.+.......  .++.++.....       
T Consensus        64 ~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------  134 (503)
T 4fuq_A           64 VEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGA--TVETLGPDGRG-------  134 (503)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTC--EEEECCTTSCS-------
T ss_pred             HHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCc--eEEEecCCccc-------
Confidence            999999999999999999999999999999999999999999998766544443322221  23333222110       


Q ss_pred             CCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEEEecCh
Q 005874          222 SGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPL  301 (672)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl  301 (672)
                             .+.+.... ...........++++++|+|||||||.||||++||+++++.+......+ +++++|++++.+|+
T Consensus       135 -------~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~p~  205 (503)
T 4fuq_A          135 -------SLTDAAAG-ASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-RFTPDDVLIHALPI  205 (503)
T ss_dssp             -------HHHHHHHT-SCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCS
T ss_pred             -------ccchhhhc-CCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEeCCh
Confidence                   11121111 1122233456789999999999999999999999999999999888888 99999999999999


Q ss_pred             HhHHHHHH-HHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhH
Q 005874          302 AHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSK  377 (672)
Q Consensus       302 ~h~~~~~~-~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~  377 (672)
                      +|.+++.. .+.+++.|+++++   +++..+.+.           ++  ++|+++++|+++..+++.....         
T Consensus       206 ~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~--~~t~~~~~P~~~~~l~~~~~~~---------  263 (503)
T 4fuq_A          206 YHTHGLFVASNVTLFARGSMIFLPKFDPDKILDL-----------MA--RATVLMGVPTFYTRLLQSPRLT---------  263 (503)
T ss_dssp             SSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHH-----------HT--TCCEEEECHHHHHHHHTCTTCS---------
T ss_pred             HHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHH-----------Hh--hcCEEEEHHHHHHHHHhCCCcc---------
Confidence            99999765 6678999999988   345555444           55  8999999999999887531100         


Q ss_pred             HHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCcccc
Q 005874          378 KLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTET  457 (672)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~  457 (672)
                                                            ....+++|.+++||+++++++.+.+...+++++++.||+||+
T Consensus       264 --------------------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~  305 (503)
T 4fuq_A          264 --------------------------------------KETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTET  305 (503)
T ss_dssp             --------------------------------------TTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTT
T ss_pred             --------------------------------------ccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEccccc
Confidence                                                  111248999999999999999999999999999999999999


Q ss_pred             cccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceE
Q 005874          458 CAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWF  537 (672)
Q Consensus       458 ~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~  537 (672)
                      +..++.........+++|.|+++++++|+|++++..+   ++|+.|||+|+||+++.||+++|+.|++.|.    .+|||
T Consensus       306 ~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~----~~g~~  378 (503)
T 4fuq_A          306 NMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKEL---PRGDIGMIEVKGPNVFKGYWRMPEKTKSEFR----DDGFF  378 (503)
T ss_dssp             EECBCCCSSSCCCTTEEEEBCTTCEEEEECTTTCCBC---CTTCCEEEEEESTTSCCCBTTCHHHHHHTBC----TTSCE
T ss_pred             CcccccCCCCCCcCCccccCCCCeEEEEEECCCCCCC---cCCCceEEEEECCchhhhhcCChhhhHhhhC----CCCCe
Confidence            8776544444556689999999999999995566654   5889999999999999999999999999997    78999


Q ss_pred             ecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcChhHHHHHHH
Q 005874          538 YTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQPAVEEWAA  614 (672)
Q Consensus       538 ~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~~~~~~~~~  614 (672)
                      +|||+|++++||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+++++...+...
T Consensus       379 ~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~  457 (503)
T 4fuq_A          379 ITGDLGKIDERGYVHILGRGKDLVIT-GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQ  457 (503)
T ss_dssp             EEEEEEEECTTCEEEECCSSTTCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHH
T ss_pred             EcceeEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHH
Confidence            99999999999999999999999997 6999999999999999999999999987654   3589999987654222111


Q ss_pred             HcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874          615 KQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       615 ~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                      ..  ..++++|+.|++|+.|+++++.|      +|++||++|++|+++|++
T Consensus       458 l~--~~l~~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~  500 (503)
T 4fuq_A          458 VL--HGLDGQLAKFKMPKKVIFVDDLP------RNTMGKVQKNVLRETYKD  500 (503)
T ss_dssp             HH--HHHBTTBCGGGCCSEEEEESCCC------BCTTSCBCHHHHHHHTTT
T ss_pred             HH--HHHHhhcccCCCCCEEEEECCCC------CCcccceeHHHHHHHHHH
Confidence            11  56778999999999999999987      999999999999998865

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=4.7e-75  Score=639.37  Aligned_cols=486  Identities=21%  Similarity=0.265  Sum_probs=394.9

Q ss_pred             CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874           57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI  136 (672)
Q Consensus        57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i  136 (672)
                      ++|+.++|+++++++||++|+.+..          .+           +++||+||.++++++|++|+++|+++||+|++
T Consensus         1 M~tl~~~l~~~a~~~p~~~a~~~~~----------~~-----------~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i   59 (504)
T 1t5h_X            1 MQTVNEMLRRAATRAPDHCALAVPA----------RG-----------LRLTHAELRARVEAVAARLHADGLRPQQRVAV   59 (504)
T ss_dssp             CCCHHHHHHHHHHHCTTSEEEEETT----------TT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             CCcHHHHHHHHHHhCCCceEEEEcC----------CC-----------ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            3689999999999999999998620          13           37999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEE--CccchHHHHhhhcCCCCccEEEEecCCCcc
Q 005874          137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVIC--GSKELKKLVDLSGQLDTVKHVICMDANIPS  214 (672)
Q Consensus       137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~  214 (672)
                      +++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+  +.+..+.+....   +.++ ++        
T Consensus        60 ~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~-~~--------  127 (504)
T 1t5h_X           60 VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG---SGAR-II--------  127 (504)
T ss_dssp             ECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC---CCCE-EE--------
T ss_pred             EcCCCHHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc---ccce-eE--------
Confidence            999999999999999999999999999999999999999999999999  766554441111   1222 12        


Q ss_pred             cccccccCCCeEEEeHHHHHhccc----CCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCC-
Q 005874          215 AVSSVEQSGRWKITSFADVQILGR----ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL-  289 (672)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~-  289 (672)
                                    .++++.....    ..+.+.....++++++|+|||||||.||||++||+++.+.+..+...+ ++ 
T Consensus       128 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~~  192 (504)
T 1t5h_X          128 --------------FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-GLR  192 (504)
T ss_dssp             --------------EGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-CCC
T ss_pred             --------------EecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-CCC
Confidence                          2222221110    111112345678999999999999999999999999999888877777 77 


Q ss_pred             -CCCcEEEEecChHhHHHHHH-HHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHH
Q 005874          290 -GSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDG  364 (672)
Q Consensus       290 -~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~  364 (672)
                       .++|++++.+|++|.+++.. .+.++..|+++++   ++|..+.+.           ++++++|+++++|+++..|.+.
T Consensus       193 ~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~  261 (504)
T 1t5h_X          193 HGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQL-----------VQQEQVTSLFATPTHLDALAAA  261 (504)
T ss_dssp             SSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHH-----------HHHHTCCEEECCHHHHHHHHHH
T ss_pred             CCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHH-----------HHHhCCeEEEeChHHHHHHHhh
Confidence             88999999999999999854 7788999999999   344445444           9999999999999999998774


Q ss_pred             HHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh
Q 005874          365 VRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL  444 (672)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~  444 (672)
                      ......                                             ....++||.+++||+++++++.+.+++.+
T Consensus       262 ~~~~~~---------------------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~  296 (504)
T 1t5h_X          262 AAHAGS---------------------------------------------SLKLDSLRHVTFAGATMPDAVLETVHQHL  296 (504)
T ss_dssp             HCCTTC---------------------------------------------CCCCTTCCEEEECCTTCCHHHHHHHHHHC
T ss_pred             hccccc---------------------------------------------cccCccccEEEEcCCcCCHHHHHHHHHhc
Confidence            311000                                             00124899999999999999999999999


Q ss_pred             CCceecccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEc-cCcccccccCCchhh
Q 005874          445 GAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIA-GPNVTVGYFKNEEKT  523 (672)
Q Consensus       445 ~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~-g~~v~~gY~~~~~~t  523 (672)
                      ++++++.||+||++. +....  ....+++|.|.++++++|+| +++.....++.|+.|||+|+ |++++.||+++|+.|
T Consensus       297 ~~~~~~~YG~TE~~~-~~~~~--~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t  372 (504)
T 1t5h_X          297 PGEKVNIYGTTEAMN-SLYMR--QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQAT  372 (504)
T ss_dssp             CSEEEEEEEETTTEE-EEEEE--SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHH
T ss_pred             Ccceeeeeccccccc-ccccc--CCCCCccccCCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCchhh
Confidence            999999999999832 22221  34568899999999999999 55532223568899999999 999999999999999


Q ss_pred             hhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEE
Q 005874          524 KEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVA  600 (672)
Q Consensus       524 ~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va  600 (672)
                      ++.|     .+|||+|||+|++++||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|
T Consensus       373 ~~~f-----~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a  446 (504)
T 1t5h_X          373 AEKL-----QDGWYRTSDVAVWTPEGTVRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTA  446 (504)
T ss_dssp             HHHE-----ETTEEEEEEEEEECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEE
T ss_pred             hhhh-----cCCccccCcEEEECCCceEEEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEE
Confidence            9999     5789999999999999999999999999997 6999999999999999999999999998765   46999


Q ss_pred             EEEcChhHHHHHHHHcChhhhhc-CCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHH
Q 005874          601 LVVASQPAVEEWAAKQGIVGKNA-RLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFA  664 (672)
Q Consensus       601 ~v~~~~~~~~~~~~~~~~~~~~~-~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~  664 (672)
                      +|+++++...+....  ...+++ +|+.|++|+.|+++++.|      +|++||++|++|+++|+
T Consensus       447 ~vv~~~~~~~~~~~l--~~~~~~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~  503 (504)
T 1t5h_X          447 CVVPRLGETLSADAL--DTFCRSSELADFKRPKRYFILDQLP------KNALNKVLRRQLVQQVS  503 (504)
T ss_dssp             EEEECTTCCCCHHHH--HHHHHTSSCCGGGSCSEEEECSCCC------BCTTSCBCHHHHHHHHC
T ss_pred             EEEecCCcCcCHHHH--HHHHhhccCcccccceEEEEhhhCC------CCCCCCEeHHHHHHHhc
Confidence            999876531111111  145556 899999999999999987      99999999999999874

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=1.3e-75  Score=649.42  Aligned_cols=499  Identities=20%  Similarity=0.245  Sum_probs=334.0

Q ss_pred             CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874           55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV  134 (672)
Q Consensus        55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V  134 (672)
                      ....|+.++|+++++++||++|+.+            .++           .+||+||.++++++|++|+++|+++||+|
T Consensus        27 ~~~~tl~~~l~~~a~~~p~~~Al~~------------~~~-----------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V   83 (544)
T 3o83_A           27 WIDQPLTRILTVGVQSHPHSLAIIC------------GER-----------QLSYIELDRLSTNLATRLAEKGLGKGDTA   83 (544)
T ss_dssp             CCCCCTTHHHHHHHHHCTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred             CCCCCHHHHHHHHHHhCCCceEEEc------------CCC-----------ceeHHHHHHHHHHHHHHHHHCCCCCCCEE
Confidence            3457999999999999999999986            333           79999999999999999999999999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccch-----HHHHhhhcCCCCccEEEEec
Q 005874          135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL-----KKLVDLSGQLDTVKHVICMD  209 (672)
Q Consensus       135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~~~~~l~~ii~~~  209 (672)
                      +|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++....     ..+.......+....++..+
T Consensus        84 ~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (544)
T 3o83_A           84 LVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLN  163 (544)
T ss_dssp             EECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEET
T ss_pred             EEECCCCHHHHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEec
Confidence            9999999999999999999999999999999999999999999999999987653     33344444455566666655


Q ss_pred             CCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCC
Q 005874          210 ANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL  289 (672)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~  289 (672)
                      .....             ..+.++.........+.....++++++|+|||||||.||||++||+++++.+......+ ++
T Consensus       164 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~~  229 (544)
T 3o83_A          164 HQATD-------------FGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-GL  229 (544)
T ss_dssp             CCTTS-------------EEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-TC
T ss_pred             CCccc-------------cchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-CC
Confidence            43211             23445544433333333456789999999999999999999999999999999988888 99


Q ss_pred             CCCcEEEEecChHhHHHHHH--HHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHH
Q 005874          290 GSKDVYLAYLPLAHVLELVA--ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDG  364 (672)
Q Consensus       290 ~~~d~~l~~~pl~h~~~~~~--~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~  364 (672)
                      +++|++++++|++|.+++..  .+.++..|+++++   +++..+.+.           ++++++|+++++|+++..+++.
T Consensus       230 ~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~  298 (544)
T 3o83_A          230 NSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSI-----------IQRHQVNMASLVPSAVIMWLEK  298 (544)
T ss_dssp             CTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHHHHH
T ss_pred             CCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCCHHHHHHH-----------HHHHCCCEEEechHHHHHHHhc
Confidence            99999999999999999875  6778999999999   344444444           9999999999999999998875


Q ss_pred             HHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh
Q 005874          365 VRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL  444 (672)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~  444 (672)
                      ......                                               ..++||.+++||+++++++.+.+++.+
T Consensus       299 ~~~~~~-----------------------------------------------~~~~lr~i~~gG~~l~~~~~~~~~~~~  331 (544)
T 3o83_A          299 AAQYKD-----------------------------------------------QIQSLKLLQVGGASFPESLARQVPEVL  331 (544)
T ss_dssp             HTTTHH-----------------------------------------------HHTTCCEEEEESSCCCHHHHTHHHHHH
T ss_pred             hhhccc-----------------------------------------------cCCcceEEEEcCCCCCHHHHHHHHHHh
Confidence            322111                                               113899999999999999999999999


Q ss_pred             CCceecccCcccccccccccCCCC-CCCCccCCCc-CCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchh
Q 005874          445 GAPIGQGYGLTETCAGGTFSEVDD-SSVGRVGAPL-PCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEK  522 (672)
Q Consensus       445 ~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~~G~p~-~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~  522 (672)
                      ++++++.||+||++..++...... ...+++|.|+ ++++++|+| +++..+   ++|+.|||+|+||+++.||+++|+.
T Consensus       332 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~---~~g~~GEl~v~g~~v~~GY~~~~~~  407 (544)
T 3o83_A          332 NCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVD-EQYREV---PEGEIGMLATRGPYTFCGYYQSPEH  407 (544)
T ss_dssp             CSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEEC-TTSCBC---CTTCCEEEEEECTTSCSCCTTCHHH
T ss_pred             CCcEEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEEC-CCCCCC---CCCCeeEEEEecCCcchhhcCChhh
Confidence            999999999999875444322211 2236899996 899999999 777665   4889999999999999999999999


Q ss_pred             hhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEE
Q 005874          523 TKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCV  599 (672)
Q Consensus       523 t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~v  599 (672)
                      |++.|+    .+|||+|||+|++++||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++..++   +.++
T Consensus       408 t~~~f~----~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~  482 (544)
T 3o83_A          408 NSQVFD----EDNYYYSGDLVQRTPDGNLRVVGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSC  482 (544)
T ss_dssp             HHHHBC----TTCCEEEEEEEEECTTSCEEEEEEEC--------------------------------------------
T ss_pred             hhhhCC----CCCCeEcCCEEEEcCCCCEEEEeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEE
Confidence            999997    8899999999999999999999999999996 6999999999999999999999999997665   3588


Q ss_pred             EEEEcChhHHHHHHHHcChhhhhc-CCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874          600 ALVVASQPAVEEWAAKQGIVGKNA-RLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD  666 (672)
Q Consensus       600 a~v~~~~~~~~~~~~~~~~~~~~~-~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~  666 (672)
                      |+|++.+.....   ......+.+ +|+.|++|+.|+++++.|      +|++||++|++|+++|++.
T Consensus       483 a~vv~~~~~~~~---~~l~~~~~~~~l~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~  541 (544)
T 3o83_A          483 AFIVSRNPELKA---VVLRRHLMELGIAQYKLPDQIKLIESLP------LTAVGKVDKKQLRSILNTS  541 (544)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             EEEEeCCCCCCH---HHHHHHHHhCCCCcccCCcEEEEeccCC------CCCCCCCcHHHHHHHHhhc
Confidence            999887633221   111144445 799999999999999987      9999999999999998763

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=4.8e-74  Score=639.16  Aligned_cols=501  Identities=19%  Similarity=0.251  Sum_probs=416.4

Q ss_pred             CCCHHHHHHHHHHH-----cCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhc-CCCC
Q 005874           57 ISTLAELFEQSCKE-----HGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQL-GHKK  130 (672)
Q Consensus        57 ~~tl~~~~~~~a~~-----~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~-g~~~  130 (672)
                      .+++.++|+++++.     +||++|+.+.           ++.       |+.+.+||+||.++++++|++|.+. |+++
T Consensus        37 ~~~~~~~l~~~a~~~~a~~~p~~~al~~~-----------~~~-------g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~   98 (570)
T 3c5e_A           37 FNFASDVLDHWADMEKAGKRPPSPALWWV-----------NGK-------GKELMWNFRELSENSQQAANVLSGACGLQR   98 (570)
T ss_dssp             CCHHHHTHHHHHHHHHTTSSCCCEEEEEE-----------CSS-------SCEEEEEHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred             ccHHHHHHHHHHhhccccCCCCceEEEEE-----------cCC-------CceeEEeHHHHHHHHHHHHHHHHHccCCCC
Confidence            45678999999999     9999999874           211       2235899999999999999999999 9999


Q ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecC
Q 005874          131 EERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDA  210 (672)
Q Consensus       131 g~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~  210 (672)
                      ||+|+|+++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++++..+.+.+.....+.++.++.++.
T Consensus        99 gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (570)
T 3c5e_A           99 GDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSE  178 (570)
T ss_dssp             TCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESS
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999888877776667777777777654


Q ss_pred             CCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHH--HHHHHHhhcCC
Q 005874          211 NIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLA--TVSAVMTIVPD  288 (672)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~--~~~~~~~~~~~  288 (672)
                      ....         +  ..+++++...... ..+.....++++++|+|||||||.||||++||+ +++  ..... ..+ .
T Consensus       179 ~~~~---------~--~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-~  243 (570)
T 3c5e_A          179 KSCD---------G--WLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-G  243 (570)
T ss_dssp             SCCT---------T--SEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-S
T ss_pred             cCcc---------c--cccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-C
Confidence            2110         1  2346666544322 122344568999999999999999999999999 554  33333 445 8


Q ss_pred             CCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeC-----CcccccCchhhhhcccccccccccceeeecchHHHHHHH
Q 005874          289 LGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG-----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVR  362 (672)
Q Consensus       289 ~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~-----~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~  362 (672)
                      ++++|++++++|++|.+++.. .+.++..|+++++.     +|..+.+.           ++++++|+++++|+++..|.
T Consensus       244 ~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~  312 (570)
T 3c5e_A          244 LQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKT-----------LSSYPIKSMMGAPIVYRMLL  312 (570)
T ss_dssp             CCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHH-----------HHHSCCCEEEECHHHHHHHH
T ss_pred             CCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHH-----------HHHhCCeEEeccHHHHHHHH
Confidence            899999999999999999875 77889999999983     33334444           99999999999999999887


Q ss_pred             HHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHH
Q 005874          363 DGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINI  442 (672)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~  442 (672)
                      +..   ..                                             ....++||.+++||+++++++.+.+++
T Consensus       313 ~~~---~~---------------------------------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~  344 (570)
T 3c5e_A          313 QQD---LS---------------------------------------------SYKFPHLQNCVTVGESLLPETLENWRA  344 (570)
T ss_dssp             TSC---TT---------------------------------------------TCCCTTCCEEEEESSCCCHHHHHHHHH
T ss_pred             hcc---cc---------------------------------------------ccccccceEEEEcCCcCCHHHHHHHHH
Confidence            520   00                                             011248999999999999999999999


Q ss_pred             HhCCceecccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEc-----cCccccccc
Q 005874          443 CLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIA-----GPNVTVGYF  517 (672)
Q Consensus       443 ~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~-----g~~v~~gY~  517 (672)
                      .++++++++||+||++..++.........+++|.|+++++++|+| +++..+   +.|+.|||+|+     |++++.||+
T Consensus       345 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~g~~~---~~G~~GEl~v~~~~~~g~~v~~GY~  420 (570)
T 3c5e_A          345 QTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIID-DKGNVL---PPGTEGDIGIRVKPIRPIGIFSGYV  420 (570)
T ss_dssp             HHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCCEEEEC-TTSCBC---CTTCCEEEEEECSSBCCTTCCCEET
T ss_pred             HhCCchhhccchhhcccceecCcccccCCCcccccCCCceEEEEC-CCCCCC---CCCCCCeeEEeccCCCCchhhcccc
Confidence            889999999999999876665544455668999999999999999 677665   48899999999     999999999


Q ss_pred             CCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC--
Q 005874          518 KNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH--  595 (672)
Q Consensus       518 ~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~--  595 (672)
                      ++|+.|++.|     .+|||+|||+|++|+||.|+|+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++  
T Consensus       421 ~~~~~t~~~f-----~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~  494 (570)
T 3c5e_A          421 DNPDKTAANI-----RGDFWLLGDRGIKDEDGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVR  494 (570)
T ss_dssp             TCHHHHHHTE-----ETTEEEEEEEEEECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTT
T ss_pred             CChhHhhhhh-----cCCccccceeEEEcCCceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCC
Confidence            9999999999     5789999999999999999999999999997 6999999999999999999999999997654  


Q ss_pred             -CeEEEEEEcChhHH---HHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874          596 -SYCVALVVASQPAV---EEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       596 -~~~va~v~~~~~~~---~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                       +.++|+|++.++..   .+...+.....++++|+.|++|+.|+++++.|      +|++||++|++|++.+.+
T Consensus       495 g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~  562 (570)
T 3c5e_A          495 GEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLP------KTVTGKIQRAKLRDKEWK  562 (570)
T ss_dssp             EEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCC------BCTTCCBCHHHHHHHHTC
T ss_pred             CeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCC------CCCCcCCcHHHHHHHHHh
Confidence             45899999876541   11111111266678999999999999999987      999999999999998854

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=1.5e-73  Score=644.79  Aligned_cols=526  Identities=20%  Similarity=0.230  Sum_probs=417.8

Q ss_pred             CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874           57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI  136 (672)
Q Consensus        57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i  136 (672)
                      .++++++|+++++++||++|+.+..           ..      .+..+.+||+||.++++++|++|+++|+++||+|+|
T Consensus        75 ~n~~~~~l~~~a~~~pd~~Al~~~~-----------~~------~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i  137 (652)
T 1pg4_A           75 LNLAANCLDRHLQENGDRTAIIWEG-----------DD------TSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAI  137 (652)
T ss_dssp             ECHHHHHTGGGHHHHTTSEEEEEEC-----------SS------TTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred             hhHHHHHHHHHhccCCCceEEEEEc-----------CC------CCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            3568999999999999999999742           11      124468999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccch---------HHHHhhhcCCC--CccEE
Q 005874          137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL---------KKLVDLSGQLD--TVKHV  205 (672)
Q Consensus       137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~l~~~~~~~~--~l~~i  205 (672)
                      +++|++++++++|||+++|++++|+++.++++++.++++++++++||+++...         +.+.+.....+  .++.+
T Consensus       138 ~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  217 (652)
T 1pg4_A          138 YMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHV  217 (652)
T ss_dssp             ECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEE
T ss_pred             EeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEE
Confidence            99999999999999999999999999999999999999999999999987642         23444433332  46677


Q ss_pred             EEecCCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHH-HHh
Q 005874          206 ICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA-VMT  284 (672)
Q Consensus       206 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~  284 (672)
                      ++++...... . .   ......+|+++...... ..+.....++++++|+|||||||.||||++||++++..+.. ...
T Consensus       218 i~~~~~~~~~-~-~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~  291 (652)
T 1pg4_A          218 IVLKRTGSDI-D-W---QEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKY  291 (652)
T ss_dssp             EEECSSCCCC-C-C---CBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHH
T ss_pred             EEEeCCCCcc-c-c---cCCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHH
Confidence            7765432110 0 0   00123568887654322 12234456799999999999999999999999999876643 444


Q ss_pred             hcCCCCCCcEEEEecChHhHHHHH-HHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHH
Q 005874          285 IVPDLGSKDVYLAYLPLAHVLELV-AENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRD  363 (672)
Q Consensus       285 ~~~~~~~~d~~l~~~pl~h~~~~~-~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~  363 (672)
                      .+ +++++|++++++|++|+.++. .++.+|..|+++++.+......+    +..+...++++++|+++++|+++..|.+
T Consensus       292 ~~-~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~----~~~~~~~i~~~~vt~~~~~P~~~~~l~~  366 (652)
T 1pg4_A          292 VF-DYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPT----PARMCQVVDKHQVNILYTAPTAIRALMA  366 (652)
T ss_dssp             HT-TCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSS----TTHHHHHHHHHTCSEEEECHHHHHHHHT
T ss_pred             hc-CCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCC----HHHHHHHHHHhCCeEEEeCHHHHHHHHh
Confidence            56 899999999999999999984 47889999999998332111111    1112223999999999999999998876


Q ss_pred             HHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHH
Q 005874          364 GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC  443 (672)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~  443 (672)
                      ......                                             .....++||.+++||+++++++.+++.+.
T Consensus       367 ~~~~~~---------------------------------------------~~~~l~sLr~i~~gGe~l~~~~~~~~~~~  401 (652)
T 1pg4_A          367 EGDKAI---------------------------------------------EGTDRSSLRILGSVGEPINPEAWEWYWKK  401 (652)
T ss_dssp             TGGGGT---------------------------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred             cCcccc---------------------------------------------ccCCcCceEEEEEecCCCCHHHHHHHHHH
Confidence            321100                                             01123589999999999999999999998


Q ss_pred             hC---CceecccCcccccccccccCCC--CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEcc--Ccccccc
Q 005874          444 LG---APIGQGYGLTETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAG--PNVTVGY  516 (672)
Q Consensus       444 ~~---~~v~~~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g--~~v~~gY  516 (672)
                      +|   +++++.||+||+++.++.....  ....+++|.|+++++++|+| +++..+   +.|+.|||+|+|  |++++||
T Consensus       402 ~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v---~~g~~GEl~i~g~~p~~~~gY  477 (652)
T 1pg4_A          402 IGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQ---EGATEGNLVITDSWPGQARTL  477 (652)
T ss_dssp             TTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBC---CSSEEEEEEECSCCTTCCCEE
T ss_pred             hCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCc---CCCceEEEEEccCCCchhhhh
Confidence            88   8999999999998766654432  34568999999999999999 677655   468899999999  7999999


Q ss_pred             cCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC-
Q 005874          517 FKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH-  595 (672)
Q Consensus       517 ~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~-  595 (672)
                      |++|+.+.+.+...  .+|||+|||+|++|+||.|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ 
T Consensus       478 ~~~~e~~~~~~~~~--~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~  554 (652)
T 1pg4_A          478 FGDHERFEQTYFST--FKNMYFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAI  554 (652)
T ss_dssp             TTCHHHHHHHHHSS--STTSEEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETT
T ss_pred             cCCHHHHHhhhhhc--CCCEEECCcEEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCC
Confidence            99999998877521  3689999999999999999999999999998 5999999999999999999999999997654 


Q ss_pred             --CeEEEEEEcChhHHH-HHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHHHH
Q 005874          596 --SYCVALVVASQPAVE-EWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLA  668 (672)
Q Consensus       596 --~~~va~v~~~~~~~~-~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~  668 (672)
                        +.++|+|+++++... +...+.....++++|+.|++|+.|++++++|      +|++||++|++|++.+.++|+
T Consensus       555 ~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP------~T~sGKi~R~~L~~~~~~~~~  624 (652)
T 1pg4_A          555 KGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLP------KTRSGKIMRRILRKIAAGDTS  624 (652)
T ss_dssp             TEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCC------BCTTSCBCHHHHHHHHHTC--
T ss_pred             CCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCC------CCCCccchHHHHHHHHhCCCC
Confidence              469999998765311 1011111266778999999999999999988      999999999999999987654

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=1e-74  Score=637.75  Aligned_cols=489  Identities=24%  Similarity=0.307  Sum_probs=326.2

Q ss_pred             CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874           57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI  136 (672)
Q Consensus        57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i  136 (672)
                      ..|+.++|+++++++||++|+.+            +++           .+||+||.++++++|++|+++|+++||+|++
T Consensus         5 ~~tl~~~l~~~a~~~pd~~Al~~------------~~~-----------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i   61 (509)
T 3ivr_A            5 DFTLADVYRRNAALFPDRTAFMV------------DGV-----------RLTHRDYLARAERLASGLLRDGVHTGDRVAI   61 (509)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             cCCHHHHHHHHHHHCCCceEEEE------------CCc-----------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            47999999999999999999986            444           7999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccc
Q 005874          137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV  216 (672)
Q Consensus       137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~  216 (672)
                      +++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+.......+.++.++.+++....  
T Consensus        62 ~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  139 (509)
T 3ivr_A           62 LSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGP--  139 (509)
T ss_dssp             ECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCSS--
T ss_pred             EcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCcC--
Confidence            999999999999999999999999999999999999999999999999999887766666677777777776553211  


Q ss_pred             cccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEE
Q 005874          217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL  296 (672)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l  296 (672)
                                   +.++.......+.+.....++++++|+|||||||.||||++||+++++.+......+ +++++|+++
T Consensus       140 -------------~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l  205 (509)
T 3ivr_A          140 -------------FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-RLTEADVNL  205 (509)
T ss_dssp             -------------CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEE
T ss_pred             -------------hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCcEEE
Confidence                         111111112222334456789999999999999999999999999999999988888 999999999


Q ss_pred             EecChHhHHHHHHHHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcC
Q 005874          297 AYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKG  373 (672)
Q Consensus       297 ~~~pl~h~~~~~~~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~  373 (672)
                      +++|++|.+++...+.++..|++.++   +++..+.+.           ++++++|+++++|+++..+++...  .    
T Consensus       206 ~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~~~~l~~~~~--~----  268 (509)
T 3ivr_A          206 GMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARD-----------IEAHKVTVMAEFAPMLGNILDQAA--P----  268 (509)
T ss_dssp             ECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEEETTHHHHHHHHCC--G----
T ss_pred             EeCCCcchhHHHHHHHHHHhCCcEEEecccCHHHHHHH-----------HHHHCCcEEEecHHHHHHHHhccc--c----
Confidence            99999999999887765555554444   455555555           999999999999999999887420  0    


Q ss_pred             chhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCceeccc
Q 005874          374 GLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQGY  452 (672)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~Y  452 (672)
                                                                 ...+++|.++.+|++   +..+.+...+ ++++++.|
T Consensus       269 -------------------------------------------~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~Y  302 (509)
T 3ivr_A          269 -------------------------------------------AQLASLRAVTGLDTP---ETIERFEATCPNATFWATF  302 (509)
T ss_dssp             -------------------------------------------GGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEE
T ss_pred             -------------------------------------------cchhhhheecccCCh---HHHHHHHHhcCCCeEEccc
Confidence                                                       011389999999988   7778888877 99999999


Q ss_pred             CcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCC
Q 005874          453 GLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDK  532 (672)
Q Consensus       453 G~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~  532 (672)
                      |+||++++++.....+ ...++|.|+++++++|+| +++..+   ++|+.|||+|+|++++.||+++|+.|++.|     
T Consensus       303 G~TE~~~~~~~~~~~~-~~~~~G~p~~~~~~~i~d-~~~~~~---~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-----  372 (509)
T 3ivr_A          303 GQSETSGLSTFAPYRD-RPKSAGRPLFWRTVAVVD-AEDRPL---PPGEVGEIVLRGPTVFKGYWNNAAATQHAF-----  372 (509)
T ss_dssp             EEGGGTEEEEEEEGGG-STTSCCEECTTCEEEEEC-TTSCBC---CTTCCEEEEEESTTSCCEETTCHHHHHHHT-----
T ss_pred             CccccccccccCcccc-CCCcccccCCCcEEEEEC-CCCCCC---CCCCceEEEEecCCccccccCCHHHhHHHh-----
Confidence            9999998776654332 234599999999999999 666654   588999999999999999999999999999     


Q ss_pred             CCceEecCcEEEEccCceEEEEecC--CCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCCC---eEEEEEEcChh
Q 005874          533 GMRWFYTGDVGQVHADGCLEIIDRK--KDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHS---YCVALVVASQP  607 (672)
Q Consensus       533 ~~gw~~TGDlg~~~~dG~l~i~gR~--~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~~---~~va~v~~~~~  607 (672)
                      .+|||+|||+|++++||.|+++||+  +|+||+ +|++|+|.+||++|.+||+|.+|+|++.+++.   .++|+|++.++
T Consensus       373 ~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~  451 (509)
T 3ivr_A          373 RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPG  451 (509)
T ss_dssp             GGGSEEEEEEEEECTTSCEEEEEEC-------------------------------------------------------
T ss_pred             hcCCcccccEEEECCCceEEEeCCCCcceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCC
Confidence            5799999999999999999999999  999996 69999999999999999999999999987653   58899998776


Q ss_pred             HHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874          608 AVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD  666 (672)
Q Consensus       608 ~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~  666 (672)
                      ...+...  ....++++|+.|++|+.|+++++.|      +|++||++|++|++++++.
T Consensus       452 ~~~~~~~--l~~~l~~~L~~~~~P~~i~~v~~lP------~t~~GKidr~~Lr~~~~~~  502 (509)
T 3ivr_A          452 ESIAADA--LAEFVASLIARYKKPKHVVFVEALP------KDAKGAIDRAAVKTAHGQE  502 (509)
T ss_dssp             -----------------------------------------------------------
T ss_pred             CCCCHHH--HHHHHHhhCcccCCCcEEEEecCCC------CCCCCCccHHHHHHHHhhc
Confidence            5433222  2267788999999999999999987      9999999999999999874

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=1.5e-73  Score=644.87  Aligned_cols=530  Identities=19%  Similarity=0.197  Sum_probs=416.6

Q ss_pred             CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHH-hcCCCCCCEEE
Q 005874           57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLA-QLGHKKEERVA  135 (672)
Q Consensus        57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~-~~g~~~g~~V~  135 (672)
                      .+++.++|+++++++||++|+.+..           ..      .+..+.+||+||.++++++|..|+ ++|+++||+|+
T Consensus        81 ~n~~~~~l~~~a~~~pd~~Al~~~~-----------~~------~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~  143 (663)
T 1ry2_A           81 LNACYNCVDRHALKTPNKKAIIFEG-----------DE------PGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVA  143 (663)
T ss_dssp             ECHHHHHTHHHHTTCTTSEEEEEEC-----------SS------TTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEE
T ss_pred             ccHHHHHHHHHhccCCCceEEEEEc-----------CC------CCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence            4679999999999999999999742           11      234468999999999999999999 99999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccch---------HHHHhhhcCCCCccEEE
Q 005874          136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL---------KKLVDLSGQLDTVKHVI  206 (672)
Q Consensus       136 i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~l~~~~~~~~~l~~ii  206 (672)
                      |+++|++++++++|||+++|++++|+++.++.+++.++++++++++||+++...         +.+.+....++.++.++
T Consensus       144 i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi  223 (663)
T 1ry2_A          144 VYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVL  223 (663)
T ss_dssp             ECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEE
T ss_pred             EEcCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEE
Confidence            999999999999999999999999999999999999999999999999987642         33445555667777787


Q ss_pred             EecCCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHH-HHhh
Q 005874          207 CMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA-VMTI  285 (672)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~  285 (672)
                      +++........ .   ......+|+++...... ..+.....++++++|+|||||||.||||++||++++..+.. ....
T Consensus       224 ~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~  298 (663)
T 1ry2_A          224 VYRKTNNPSVA-F---HAPRDLDWATEKKKYKT-YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYT  298 (663)
T ss_dssp             EECSSCCSSCC-C---CSSSEEEHHHHHTTSCS-CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHH
T ss_pred             EEecCCCCccc-c---CCCccccHHHHHhhcCC-CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHh
Confidence            77643210000 0   01123567777654322 22334456799999999999999999999999998876643 4445


Q ss_pred             cCCCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHH
Q 005874          286 VPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDG  364 (672)
Q Consensus       286 ~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~  364 (672)
                      + +++++|++++++|++|+.+... ++.+|..|+++++.+......+    +..+...++++++|+++++|++++.|.+.
T Consensus       299 ~-~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~----~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~  373 (663)
T 1ry2_A          299 F-DTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPN----YSRYWDIIDEHKVTQFYVAPTALRLLKRA  373 (663)
T ss_dssp             S-CCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSC----TTHHHHHHHHTTCSEEEECHHHHHHHTTS
T ss_pred             c-CCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCC----HHHHHHHHHHcCCCEEEecHHHHHHHHhc
Confidence            6 8999999999999999999854 7789999999998322111111    11122339999999999999999887652


Q ss_pred             HHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh
Q 005874          365 VRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL  444 (672)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~  444 (672)
                      ..+..                                             +....++||.+++||+++++++.+++.+.+
T Consensus       374 ~~~~~---------------------------------------------~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~  408 (663)
T 1ry2_A          374 GDSYI---------------------------------------------ENHSLKSLRCLGSVGEPIAAEVWEWYSEKI  408 (663)
T ss_dssp             CTTSS---------------------------------------------SSCCCTTCCEEEECSSCCCHHHHHHHHHTT
T ss_pred             Ccccc---------------------------------------------ccCCcCceEEEEEEcCCCCHHHHHHHHHHh
Confidence            11000                                             011235899999999999999999999988


Q ss_pred             C---CceecccCcccccccccccCC---CCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEcc--Ccccccc
Q 005874          445 G---APIGQGYGLTETCAGGTFSEV---DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAG--PNVTVGY  516 (672)
Q Consensus       445 ~---~~v~~~YG~TE~~~~~~~~~~---~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g--~~v~~gY  516 (672)
                      |   +++++.||+||+++.++....   .....+++|.|+++++++|+|.+++..++  ..|+.|||+++|  |+++.||
T Consensus       409 g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~--~~g~~Gel~i~g~~p~~~~gy  486 (663)
T 1ry2_A          409 GKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELN--TSHAEGVLAVKAAWPSFARTI  486 (663)
T ss_dssp             SCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEE--CSSCEEEEEESSCCTTSCCEE
T ss_pred             CCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCC--CCCcceEEEEecCCCchhccc
Confidence            8   899999999999876655433   23456899999999999999933676654  127899999999  5899999


Q ss_pred             cCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC-
Q 005874          517 FKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH-  595 (672)
Q Consensus       517 ~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~-  595 (672)
                      |++|+.+.+.|...  .+|||+|||+|++|+||.|+|+||+||+||+ +|++|+|.+||++|.+||.|.+|+|++.+++ 
T Consensus       487 ~~~~~~~~~~~~~~--~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~  563 (663)
T 1ry2_A          487 WKNHDRYLDTYLNP--YPGYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDL  563 (663)
T ss_dssp             TTCHHHHHHHHTSS--STTSEEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCT
T ss_pred             ccChHHHHHhhhcC--CCCEEEcCCEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCC
Confidence            99999998887522  3689999999999999999999999999998 5999999999999999999999999998764 


Q ss_pred             --CeEEEEEEcChhHH---H-H----HHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874          596 --SYCVALVVASQPAV---E-E----WAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       596 --~~~va~v~~~~~~~---~-~----~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                        +.++|+|+++++..   . +    ...+.....++++|+.|++|+.|++++++|      +|++||++|++|++.+.+
T Consensus       564 ~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP------~T~sGKi~R~~L~~~~~~  637 (663)
T 1ry2_A          564 TGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLP------KTRSGKIMRRILRKILAG  637 (663)
T ss_dssp             TSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCC------BCTTSCBCHHHHHHSCC-
T ss_pred             CCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCC------CCCccCchHHHHHHHHcC
Confidence              46999999887643   1 1    011122266778999999999999999988      999999999999999877


Q ss_pred             HHHh
Q 005874          666 DLAR  669 (672)
Q Consensus       666 ~i~~  669 (672)
                      +++.
T Consensus       638 ~~~~  641 (663)
T 1ry2_A          638 ESDQ  641 (663)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            6543

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=7.2e-74  Score=636.79  Aligned_cols=485  Identities=20%  Similarity=0.240  Sum_probs=393.4

Q ss_pred             CCCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCE
Q 005874           54 WEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEER  133 (672)
Q Consensus        54 ~~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~  133 (672)
                      ++...|+.++|+++++++||++|+.+            .++           .+||+||.++++++|.+|.++|+++||+
T Consensus        35 ~~~~~~l~~~l~~~a~~~p~~~Al~~------------~~~-----------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~   91 (563)
T 1amu_A           35 YPRDKTIHQLFEEQVSKRPNNVAIVC------------ENE-----------QLTYHELNVKANQLARIFIEKGIGKDTL   91 (563)
T ss_dssp             CCTTCCHHHHHHHHHHHCTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCE
T ss_pred             CCCCCcHHHHHHHHHHHCCCCeEEEe------------CCc-----------eecHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence            34457999999999999999999986            333           7999999999999999999999999999


Q ss_pred             EEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCc
Q 005874          134 VAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIP  213 (672)
Q Consensus       134 V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~  213 (672)
                      |+|+++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+...    .....+..++....
T Consensus        92 V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~----~~~~~~~~~~~~~~  167 (563)
T 1amu_A           92 VGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI----QFNGQVEIFEEDTI  167 (563)
T ss_dssp             EEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTS----CCCSEEEECCCSTT
T ss_pred             EEEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhc----cccCceeeecchhh
Confidence            99999999999999999999999999999999999999999999999999998765543322    11112222221100


Q ss_pred             ccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCc
Q 005874          214 SAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKD  293 (672)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d  293 (672)
                                          ..  ...........++++++|+|||||||.||||++||+|+.+.+......+ +++++|
T Consensus       168 --------------------~~--~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d  224 (563)
T 1amu_A          168 --------------------KI--REGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-NVTEKD  224 (563)
T ss_dssp             --------------------TT--SCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-CCCTTC
T ss_pred             --------------------cc--ccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-CCCCCC
Confidence                                00  0011112345678999999999999999999999999999888877777 899999


Q ss_pred             EEEEecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcC
Q 005874          294 VYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKG  373 (672)
Q Consensus       294 ~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~  373 (672)
                      ++++++|++|..++...+.+++.|+++++.+.....+     +..+...++++++|++.++|+++..+...         
T Consensus       225 ~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~---------  290 (563)
T 1amu_A          225 RIGQFASISFDASVWEMFMALLTGASLYIILKDTIND-----FVKFEQYINQKEITVITLPPTYVVHLDPE---------  290 (563)
T ss_dssp             EEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTC-----HHHHHHHHHHTTCCEEEECHHHHTTSCTT---------
T ss_pred             EEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcC-----HHHHHHHHHHcCCcEEEeCHHHHHHHHhc---------
Confidence            9999999999999888888999999999843221111     11122228999999999999998765321         


Q ss_pred             chhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccC
Q 005874          374 GLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYG  453 (672)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG  453 (672)
                                                                  ..+++|.+++||+++++++.+.++.  .++++++||
T Consensus       291 --------------------------------------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG  324 (563)
T 1amu_A          291 --------------------------------------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYG  324 (563)
T ss_dssp             --------------------------------------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEEC
T ss_pred             --------------------------------------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEEC
Confidence                                                        0138999999999999999999887  478999999


Q ss_pred             cccccccccccCCCC---CCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccC
Q 005874          454 LTETCAGGTFSEVDD---SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVD  530 (672)
Q Consensus       454 ~TE~~~~~~~~~~~~---~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~  530 (672)
                      +||++..++......   ....++|.|+++++++|+| +++..+   +.|+.|||||+||+++.|||++|+.|++.|..+
T Consensus       325 ~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~---~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~  400 (563)
T 1amu_A          325 PTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLK---SVGEAGELCIGGEGLARGYWKRPELTSQKFVDN  400 (563)
T ss_dssp             CGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBC---CTTCEEEEEEEETTCCCEETTCHHHHHHHEEEC
T ss_pred             cCHHhHhheeeecccccCCCCCcccceeCCCEEEEEC-CCcCCC---CCCCcEEEEEechhhChhhCCCchhhhhhcccC
Confidence            999987766543322   2456899999999999999 677654   478999999999999999999999999999643


Q ss_pred             C--CCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcC
Q 005874          531 D--KGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVAS  605 (672)
Q Consensus       531 ~--~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~  605 (672)
                      +  +++|||+|||+|++|+||.|+|+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+++
T Consensus       401 ~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~  479 (563)
T 1amu_A          401 PFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSE  479 (563)
T ss_dssp             SSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEES
T ss_pred             CCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeC
Confidence            2  35679999999999999999999999999998 6999999999999999999999999997654   3589999986


Q ss_pred             hhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHH
Q 005874          606 QPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAF  663 (672)
Q Consensus       606 ~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~  663 (672)
                      .....+...    ..++++|+.|++|+.|+++++.|      +|++||++|++|++.+
T Consensus       480 ~~~~~~~l~----~~l~~~L~~y~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~  527 (563)
T 1amu_A          480 KHIPLEQLR----QFSSEELPTYMIPSYFIQLDKMP------LTSNGKIDRKQLPEPD  527 (563)
T ss_dssp             SCCCHHHHH----HHHHHHSCGGGSCSEEEECSSCC------BCTTSSBCGGGSCCCC
T ss_pred             CCCCHHHHH----HHHHhhCchhhCCcEEEEecccC------CCCCcChhHHhcCCcc
Confidence            543222222    56678999999999999999988      9999999999997643

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=4.5e-73  Score=624.72  Aligned_cols=486  Identities=21%  Similarity=0.235  Sum_probs=406.4

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQL-GHKKEERVAI  136 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~-g~~~g~~V~i  136 (672)
                      +|+.++|+++++++||++|+.+            +++           ++||+||.++++++|.+|.+. |.++|++|++
T Consensus         1 m~l~~~l~~~a~~~p~~~Al~~------------~~~-----------~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i   57 (511)
T 3e7w_A            1 MKLLHAIQTHAETYPQTDAFRS------------QGQ-----------SLTYQELWEQSDRAAAAIQKRISGEKKSPILV   57 (511)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEE
T ss_pred             CcHHHHHHHHHHHCCCCeEEEc------------CCc-----------eeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEE
Confidence            4789999999999999999986            444           799999999999999999885 8889999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccc
Q 005874          137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV  216 (672)
Q Consensus       137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~  216 (672)
                      +++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++......      ...                
T Consensus        58 ~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~~----------------  115 (511)
T 3e7w_A           58 YGHMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSID------AVG----------------  115 (511)
T ss_dssp             EESSCHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CCC----------------
T ss_pred             EecCCHHHHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccch------hcc----------------
Confidence            9999999999999999999999999999999999999999999999997643210      000                


Q ss_pred             cccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEE
Q 005874          217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL  296 (672)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l  296 (672)
                            ......++.++...............++++++|+|||||||.||||++||+++.+.+......+ .++++|+++
T Consensus       116 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l  188 (511)
T 3e7w_A          116 ------QQIQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-PVSGGKIFL  188 (511)
T ss_dssp             ------CSSCEEEHHHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-TTTTTCEEE
T ss_pred             ------cccceecHhhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-CCCccceEE
Confidence                  1123455666665443333333446778999999999999999999999999999999888888 899999999


Q ss_pred             EecChHhHHHHHHHHHHhHhCcEEeeC------CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhh
Q 005874          297 AYLPLAHVLELVAENLIAGVGSAIGYG------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD  370 (672)
Q Consensus       297 ~~~pl~h~~~~~~~~~~l~~G~~i~~~------~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~  370 (672)
                      +++|++|.+++...+.++..|+++++.      ++..+.+.           ++++++|+++++|+++..++......  
T Consensus       189 ~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~--  255 (511)
T 3e7w_A          189 NQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEE-----------LKKSGLNVWTSTPSFVQMCLMDPGFS--  255 (511)
T ss_dssp             ECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHH-----------HHHHCCSEEEECHHHHHHHHTSTTCS--
T ss_pred             EeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHH-----------HHHcCCcEEEecHHHHHHHHhccccc--
Confidence            999999999988888999999999983      34444444           99999999999999998876521100  


Q ss_pred             hcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCcee
Q 005874          371 AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIG  449 (672)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~  449 (672)
                                                                   ....+++|.+++||+++++++.+.+++.+ +++++
T Consensus       256 ---------------------------------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~  290 (511)
T 3e7w_A          256 ---------------------------------------------QDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIF  290 (511)
T ss_dssp             ---------------------------------------------TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEE
T ss_pred             ---------------------------------------------cccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEE
Confidence                                                         11224899999999999999999999988 89999


Q ss_pred             cccCcccccccccccCCC-----CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhh
Q 005874          450 QGYGLTETCAGGTFSEVD-----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK  524 (672)
Q Consensus       450 ~~YG~TE~~~~~~~~~~~-----~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~  524 (672)
                      +.||+||+++.++.....     .....++|.|.++++++|+| +++..+   ++|+.|||+|+||+++.|||++|+.|+
T Consensus       291 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~  366 (511)
T 3e7w_A          291 NTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPL---PEGEKGEIVIAGPSVSRGYLGEPELTE  366 (511)
T ss_dssp             ECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBC---CTTCCEEEEEESTTSCCCBTTCHHHHH
T ss_pred             eCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEEC-CCCCCC---CCCCceEEEEecCccChhhCCCcccch
Confidence            999999998776644322     23446799999999999999 677655   488999999999999999999999999


Q ss_pred             hhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEE
Q 005874          525 EVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVAL  601 (672)
Q Consensus       525 ~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~  601 (672)
                      +.|... ++++||+|||+|++ +||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+
T Consensus       367 ~~f~~~-~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~  443 (511)
T 3e7w_A          367 KAFFSH-EGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAA  443 (511)
T ss_dssp             HHEEES-SSSEEEEEEEEEEE-ETTEEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEE
T ss_pred             hhhcCC-CCCEEEeCCCeEEc-cCCeEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEE
Confidence            999532 14458999999999 59999999999999998 6999999999999999999999999987544   469999


Q ss_pred             EEcChhHHHHH--HHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874          602 VVASQPAVEEW--AAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD  666 (672)
Q Consensus       602 v~~~~~~~~~~--~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~  666 (672)
                      |+++++...+.  ..+.....++++||.|++|+.++++++.|      +|++|||+|++|++.+++.
T Consensus       444 vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP------~t~~GKi~R~~L~~~~~~~  504 (511)
T 3e7w_A          444 IVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQ------MTANGKIDRKRIGEEVLVR  504 (511)
T ss_dssp             EEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCC------BCTTSCBCHHHHHHHHHHH
T ss_pred             EEeccccccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCC------CCCCcCccHHHHHhHHhhh
Confidence            99887532110  11111266778999999999999999988      9999999999999999864

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=3.4e-74  Score=641.64  Aligned_cols=480  Identities=24%  Similarity=0.265  Sum_probs=313.7

Q ss_pred             CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874           55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV  134 (672)
Q Consensus        55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V  134 (672)
                      +...+++++|+++++++||++|+.+            .++           .+||+||.++++++|++|+++|+++||+|
T Consensus        72 ~~~~~l~~~l~~~a~~~pd~~A~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V  128 (570)
T 4gr5_A           72 PAGACVHELFEAQAARAPDAVALLH------------EAD-----------ELTYGALNERANRLAHRLVGLGVAPGTLV  128 (570)
T ss_dssp             CCSCCHHHHHHHHHHHCTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred             CccCCHHHHHHHHHHHCCCCeEEEC------------CCC-----------cEeHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence            4567999999999999999999986            333           79999999999999999999999999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcc
Q 005874          135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS  214 (672)
Q Consensus       135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~  214 (672)
                      +|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++......       +.....+...+...  
T Consensus       129 ~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~--  199 (570)
T 4gr5_A          129 GVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGR-------LTGTTTLYVEDEAA--  199 (570)
T ss_dssp             EEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTS-------SCSSEEEECCC-----
T ss_pred             EEEeCCCHHHHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhc-------ccCCcceeeecccc--
Confidence            999999999999999999999999999999999999999999999999999765332       22222222111100  


Q ss_pred             cccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcE
Q 005874          215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV  294 (672)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~  294 (672)
                                           .............++++++|+|||||||.||||++||+++++.+.. ...+ .++++|+
T Consensus       200 ---------------------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d~  256 (570)
T 4gr5_A          200 ---------------------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA-GFGPDEV  256 (570)
T ss_dssp             -------------------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS-CCSTTCE
T ss_pred             ---------------------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhc-CCCCCCE
Confidence                                 0011111223456899999999999999999999999999876544 2334 7889999


Q ss_pred             EEEecChHhHHHHHHHHHHhHhCcEEeeCC-----cccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhh
Q 005874          295 YLAYLPLAHVLELVAENLIAGVGSAIGYGT-----PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKV  369 (672)
Q Consensus       295 ~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~-----~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~  369 (672)
                      +++++|++|..+....+.++..|+++++.+     +..+.+.           ++++++|++.++|+++..|.+..... 
T Consensus       257 ~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~~~~~~-  324 (570)
T 4gr5_A          257 FLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGEL-----------VARHGVTMLQLSASLFNFLVDEVPEA-  324 (570)
T ss_dssp             EEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHH-----------HHHHTCCEEEEEHHHHHHHHHHCGGG-
T ss_pred             EEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHH-----------HHHcCCcEEEecHHHHHHHHhhchhh-
Confidence            999999999877777888999999999833     3333333           99999999999999999987632211 


Q ss_pred             hhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCce
Q 005874          370 DAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPI  448 (672)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v  448 (672)
                                                                       .++||.+++||++++++..+.+...+ ++++
T Consensus       325 -------------------------------------------------~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l  355 (570)
T 4gr5_A          325 -------------------------------------------------FEGVRYAITGGEPASVPHVAKARRDHPALRL  355 (570)
T ss_dssp             -------------------------------------------------GTTCSEEEEESSCCCHHHHHHHHHHCTTCEE
T ss_pred             -------------------------------------------------CCCceEEEEecccCCHHHHHHHHHhCCCcEE
Confidence                                                             13899999999999999988888776 8999


Q ss_pred             ecccCcccccccccccCCC----CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhh
Q 005874          449 GQGYGLTETCAGGTFSEVD----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK  524 (672)
Q Consensus       449 ~~~YG~TE~~~~~~~~~~~----~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~  524 (672)
                      +++||+||+++.++.....    .....++|.|+++++++|+| +++..+   +.|+.|||+|+||+++.|||++|+.|+
T Consensus       356 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~---~~G~~GEl~v~g~~v~~GY~~~~~~t~  431 (570)
T 4gr5_A          356 GNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPA---ANGALGELYVAGAGLAHGYVSRPALTA  431 (570)
T ss_dssp             EEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCBC---CTTCEEEEEEEETTCCCEETTCHHHHH
T ss_pred             EEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEEC-CCCCCC---CCCCcEEEEEeecccchhcCCCchhhh
Confidence            9999999998776654322    22346799999999999999 676655   478999999999999999999999999


Q ss_pred             hhcccC----CCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---Ce
Q 005874          525 EVYKVD----DKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SY  597 (672)
Q Consensus       525 ~~~~~~----~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~  597 (672)
                      ++|..+    .+++|||+|||+|++|+||.|+|+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.
T Consensus       432 ~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~  510 (570)
T 4gr5_A          432 ERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQ  510 (570)
T ss_dssp             HHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC--------------------------------------------
T ss_pred             cccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeE
Confidence            999744    235689999999999999999999999999997 6999999999999999999999999997654   46


Q ss_pred             EEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHH
Q 005874          598 CVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKA  662 (672)
Q Consensus       598 ~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~  662 (672)
                      ++|+|++++...... .+.....++++|+.|++|+.++++++.|      +|++|||+|++|++.
T Consensus       511 ~~a~vv~~~~~~~~~-~~~l~~~l~~~l~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~  568 (570)
T 4gr5_A          511 LVAYVVAERADAPPD-AAELRRHVAEALPAYMVPVECVPVDELP------RTPNGKLDRRALTGS  568 (570)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             EEEEEEecCCCCCcC-HHHHHHHHHhhCccccCCcEEEEcccCC------CCCCcCcchHhhhcc
Confidence            899998865432211 1122267778999999999999999987      999999999999863

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=1.7e-73  Score=628.44  Aligned_cols=484  Identities=22%  Similarity=0.238  Sum_probs=397.6

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF  137 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~  137 (672)
                      +|+.++|+++++++||++|+.+            .++           .+||+||.++++++|.+|.++|+++|++|+++
T Consensus         1 m~l~~~l~~~a~~~p~~~A~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~   57 (512)
T 3fce_A            1 MKLLEQIEKWAAETPDQTAFVW------------RDA-----------KITYKQLKEDSDALAHWISSEYPDDRSPIMVY   57 (512)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEE
T ss_pred             CcHHHHHHHHHHHCCCceEEEe------------CCc-----------eEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            4789999999999999999987            333           79999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCccccc
Q 005874          138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS  217 (672)
Q Consensus       138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~  217 (672)
                      ++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++.....      ...+                 
T Consensus        58 ~~n~~e~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~------~~~~-----------------  114 (512)
T 3fce_A           58 GHMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTV------TDLP-----------------  114 (512)
T ss_dssp             ESSCHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCS------SCCS-----------------
T ss_pred             eCCCHHHHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccc------cccc-----------------
Confidence            99999999999999999999999999999999999999999999999854321      0000                 


Q ss_pred             ccccCCCeEEEeH---HHHHhccc-CCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCc
Q 005874          218 SVEQSGRWKITSF---ADVQILGR-ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKD  293 (672)
Q Consensus       218 ~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d  293 (672)
                             ..+...   .++..... ..+.+.....++++++|+|||||||.||||++||+++++.+......+ +++++|
T Consensus       115 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~~~~d  186 (512)
T 3fce_A          115 -------VRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-NLQTGQ  186 (512)
T ss_dssp             -------SEEEETHHHHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-TCCSSC
T ss_pred             -------cceechhhhhhhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-CCCCCC
Confidence                   111111   22221111 112223445789999999999999999999999999999998888888 899999


Q ss_pred             EEEEecChHhHHHHHHHHHHhHhCcEEeeC------CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHH
Q 005874          294 VYLAYLPLAHVLELVAENLIAGVGSAIGYG------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRK  367 (672)
Q Consensus       294 ~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~------~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~  367 (672)
                      ++++++|++|.+++...+.++..|+++++.      ++..+.+.           ++++++|++.++|+++..++.....
T Consensus       187 ~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~  255 (512)
T 3fce_A          187 VFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFAS-----------LEQSDIQVWTSTPSFAEMCLMEASF  255 (512)
T ss_dssp             EEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHH-----------HHHHCCCEEEECHHHHHHHTTSTTC
T ss_pred             EEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHH-----------HHHcCCcEEEecHHHHHHHHhhccc
Confidence            999999999999998888999999999984      34444444           9999999999999999887642110


Q ss_pred             hhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CC
Q 005874          368 KVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GA  446 (672)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~  446 (672)
                      .                                               ....+++|.+++||+++++++.+.+.+.+ ++
T Consensus       256 ~-----------------------------------------------~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~  288 (512)
T 3fce_A          256 S-----------------------------------------------ESMLPNMKTFLFCGEVLPNEVARKLIERFPKA  288 (512)
T ss_dssp             S-----------------------------------------------TTTSTTCCEEEECSSCCCHHHHHHHHHHCTTC
T ss_pred             c-----------------------------------------------chhCccccEEEEecCcCCHHHHHHHHHHCCCC
Confidence            0                                               11224899999999999999999999988 89


Q ss_pred             ceecccCcccccccccccCCC-----CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCch
Q 005874          447 PIGQGYGLTETCAGGTFSEVD-----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEE  521 (672)
Q Consensus       447 ~v~~~YG~TE~~~~~~~~~~~-----~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~  521 (672)
                      ++++.||+||+++.++.....     .....++|.|.++++++|+| +++..+   ++|+.|||+|+||+++.|||++|+
T Consensus       289 ~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~---~~g~~GEl~v~g~~v~~GY~~~~~  364 (512)
T 3fce_A          289 TIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIA---PDGEKGEIVIVGPSVSVGYLGSPE  364 (512)
T ss_dssp             EEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBC---CTTSCEEEEEESTTSCSCBTTCHH
T ss_pred             EEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEEC-CCCCCC---CCCCeEEEEEeccccChhhcCCch
Confidence            999999999998776654332     22457899999999999999 676655   478999999999999999999999


Q ss_pred             hhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeE
Q 005874          522 KTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYC  598 (672)
Q Consensus       522 ~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~  598 (672)
                      .|++.|.. .+++|||+|||+|++ +||.|+|+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.++.   +.+
T Consensus       365 ~t~~~f~~-~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~  441 (512)
T 3fce_A          365 LTEKAFTM-IDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYL  441 (512)
T ss_dssp             HHHHHEEE-ETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEE
T ss_pred             hhhhcccc-CCCCEEEeCCceEEe-cCCEEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEE
Confidence            99999832 126789999999999 79999999999999998 6999999999999999999999999986544   358


Q ss_pred             EEEEEcChhHHHHH--HHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874          599 VALVVASQPAVEEW--AAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD  666 (672)
Q Consensus       599 va~v~~~~~~~~~~--~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~  666 (672)
                      +|+|++++....+.  ........++++|+.|++|+.++++++.|      +|++||++|++|++.|+++
T Consensus       442 ~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP------~t~~GKi~R~~L~~~~~~~  505 (512)
T 3fce_A          442 LAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIP------MTPNGKVDRKKLLSEVTAL  505 (512)
T ss_dssp             EEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCC------BCTTSSBCHHHHHHHHHC-
T ss_pred             EEEEecCCccccchhhhHHHHHHHHHhhCchhcCCeEEEEecccC------CCCCcChHHHHHHhhhhhc
Confidence            99999876431110  11111266779999999999999999988      9999999999999999763

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=6.7e-73  Score=626.34  Aligned_cols=495  Identities=24%  Similarity=0.255  Sum_probs=395.1

Q ss_pred             CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874           57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI  136 (672)
Q Consensus        57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i  136 (672)
                      .+++.++|+++++ +||++|+.+            ++.           .+||+||.++++++|++|+++|+++||+|++
T Consensus        23 ~~~~~~~l~~~~~-~p~~~A~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i   78 (529)
T 2v7b_A           23 FNFAAYLFRLNET-RAGKTAYID------------DTG-----------STTYGELEERARRFASALRTLGVHPEERILL   78 (529)
T ss_dssp             CCHHHHHHHHTGG-GTTSEEEEC------------SSC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             eeHHHHHHHhhhc-cCCceEEEe------------CCC-----------CccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            4569999999999 999999985            333           7999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCc-cEEEEecCCCccc
Q 005874          137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTV-KHVICMDANIPSA  215 (672)
Q Consensus       137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l-~~ii~~~~~~~~~  215 (672)
                      +++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.+.....+.+ ..++.++..... 
T Consensus        79 ~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  157 (529)
T 2v7b_A           79 VMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESE-  157 (529)
T ss_dssp             ECCSSTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC-----
T ss_pred             EcCCcHHHHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccc-
Confidence            999999999999999999999999999999999999999999999999998877666655444444 455554432110 


Q ss_pred             ccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHH-HHHHHHHHhhcCCCCCCcE
Q 005874          216 VSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNV-LATVSAVMTIVPDLGSKDV  294 (672)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~~d~  294 (672)
                              ......++++...... ..+.....++++++|+|||||||.||||++||+++ .+........+ ++.++|+
T Consensus       158 --------~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-~~~~~d~  227 (529)
T 2v7b_A          158 --------PRLAPLFEELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-GIAENDV  227 (529)
T ss_dssp             ----------CCCBHHHHHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-CCCTTCE
T ss_pred             --------cccccchhhhhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-CCCCCcE
Confidence                    0111246666543221 22233457799999999999999999999999999 55554444445 7889999


Q ss_pred             EEEecChHhHHHHHH-HHHHhHhCcEEeeC----CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhh
Q 005874          295 YLAYLPLAHVLELVA-ENLIAGVGSAIGYG----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKV  369 (672)
Q Consensus       295 ~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~----~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~  369 (672)
                      +++.+|++|.+++.. .+.++..|+++++.    ++..+.+.           ++++++|+++++|+++..+++...   
T Consensus       228 ~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~---  293 (529)
T 2v7b_A          228 VFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFAR-----------LVEHRPTVFYGVPTLYANMLVSPN---  293 (529)
T ss_dssp             EEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHH-----------HHHSCCSEEEECHHHHHHHHTCTT---
T ss_pred             EEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHH-----------HHHhCCEEEEecHHHHHHHHhCcc---
Confidence            999999999999876 56789999999974    33334444           999999999999999988865210   


Q ss_pred             hhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCcee
Q 005874          370 DAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIG  449 (672)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~  449 (672)
                        ...                                          ....++|.+++||+++++++.+.+++.++++++
T Consensus       294 --~~~------------------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~  329 (529)
T 2v7b_A          294 --LPA------------------------------------------RADVAIRICTSAGEALPREIGERFTAHFGCEIL  329 (529)
T ss_dssp             --CCC------------------------------------------GGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEE
T ss_pred             --ccc------------------------------------------ccCCceEEEEEcCCCCCHHHHHHHHHHhCCcee
Confidence              000                                          000279999999999999999999999999999


Q ss_pred             cccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhccc
Q 005874          450 QGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV  529 (672)
Q Consensus       450 ~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~  529 (672)
                      ++||+||++.+.+.........+++|.|+++++++|+| +++..+   ++|+.|||+|+||+++.||+++|+.|.+.|  
T Consensus       330 ~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~---~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f--  403 (529)
T 2v7b_A          330 DGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRD-EAGHAV---PDGEVGDLYIKGPSAAVMYWNNREKSRATF--  403 (529)
T ss_dssp             EEEECTTTSSEEEECCTTCCCTTSCCEECTTCEEEEEC-TTSCBC---CTTSCEEEEEECTTCCCCBTTCHHHHHHHE--
T ss_pred             eeEchhhcCceeeccccCCCccCCcccCCCCCEEEEEC-CCCCCC---CCCCccEEEEecCCcccccCCChHHHHHhh--
Confidence            99999999766555544455668999999999999999 777665   478999999999999999999999999999  


Q ss_pred             CCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCC--CCeEEEEEEcChh
Q 005874          530 DDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPF--HSYCVALVVASQP  607 (672)
Q Consensus       530 ~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~--~~~~va~v~~~~~  607 (672)
                         .+|||+|||+|++++||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++...  .+.++|+|++.++
T Consensus       404 ---~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~  479 (529)
T 2v7b_A          404 ---LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKRE  479 (529)
T ss_dssp             ---ETTEEEEEEEEEECTTSCEEEEEEGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTT
T ss_pred             ---hcCCcccCceEEECCCccEEEeCccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCC
Confidence               5789999999999999999999999999997 699999999999999999999999999722  2458999998764


Q ss_pred             HH--HHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHH
Q 005874          608 AV--EEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRK  661 (672)
Q Consensus       608 ~~--~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~  661 (672)
                      ..  ..... .....++++|+.|++|+.|+++++.|      +|++||++|++|++
T Consensus       480 ~~~~~~~~~-~l~~~l~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~  528 (529)
T 2v7b_A          480 FAPSEILAE-ELKAFVKDRLAPHKYPRDIVFVDDLP------KTATGKIQRFKLRE  528 (529)
T ss_dssp             CCCCHHHHH-HHHHHHHTTSCTTTSCSEEEEESCCC------BCTTSCBCHHHHHC
T ss_pred             CCcchhHHH-HHHHHHHhhcchhhCCeEEEEeccCC------CCCccchhHHhHhh
Confidence            31  11111 11266779999999999999999987      99999999999985

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=1.4e-72  Score=634.19  Aligned_cols=499  Identities=18%  Similarity=0.234  Sum_probs=411.9

Q ss_pred             CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874           55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV  134 (672)
Q Consensus        55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V  134 (672)
                      ....|+.++|+++++  ||++|+.+            .++           .+||+||.++++++|++|+++|+++|++|
T Consensus        24 ~~~~~l~~~~~~~a~--pd~~Av~~------------~~~-----------~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V   78 (617)
T 3rg2_A           24 WQDLPLTDILTRHAA--SDSIAVID------------GER-----------QLSYRELNQAADNLACSLRRQGIKPGETA   78 (617)
T ss_dssp             CCCCCTTHHHHTTTT--CCSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred             CCcCCHHHHHHHhhC--CCCeEEec------------CCc-----------eEeHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence            455899999999987  99999986            333           79999999999999999999999999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccch-----HHHHhhhcCCCCccEEEEec
Q 005874          135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL-----KKLVDLSGQLDTVKHVICMD  209 (672)
Q Consensus       135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~~~~~l~~ii~~~  209 (672)
                      +++++|++++++++|||+++|+++||+++.++.+++.++++++++++++++....     ..+.......+.++.+...+
T Consensus        79 ~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (617)
T 3rg2_A           79 LVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLN  158 (617)
T ss_dssp             EEECCSSHHHHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEET
T ss_pred             EEECCCcHHHHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecc
Confidence            9999999999999999999999999999999999999999999999999987654     33333334445555565554


Q ss_pred             CCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCC
Q 005874          210 ANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL  289 (672)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~  289 (672)
                      .....              .+.+....... ........++++++|+|||||||.||||+++|+++++.+......+ ++
T Consensus       159 ~~~~~--------------~~~~~~~~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-~~  222 (617)
T 3rg2_A          159 DSGEH--------------NLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-QF  222 (617)
T ss_dssp             CCSTT--------------BHHHHHHSCCS-SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TC
T ss_pred             ccccc--------------chhhhhccccc-ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-CC
Confidence            43211              12333322221 2223455679999999999999999999999999999999988888 89


Q ss_pred             CCCcEEEEecChHhHHHHHH--HHHHhHhCcEEeeCC---cccccCchhhhhcccccccccccceeeecchHHHHHHHHH
Q 005874          290 GSKDVYLAYLPLAHVLELVA--ENLIAGVGSAIGYGT---PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDG  364 (672)
Q Consensus       290 ~~~d~~l~~~pl~h~~~~~~--~~~~l~~G~~i~~~~---~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~  364 (672)
                      .++|++++++|++|.+++..  .+.++..|+++++.+   +..+.+.           ++++++|++.++|+++..+.+.
T Consensus       223 ~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~  291 (617)
T 3rg2_A          223 TQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPL-----------IEKHQVNVTALVPPAVSLWLQA  291 (617)
T ss_dssp             CTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHH
T ss_pred             CCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHH-----------HHHhCCcEEEcchHHHHHHHHh
Confidence            99999999999999999875  778899999999933   3333333           8999999999999999998875


Q ss_pred             HHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh
Q 005874          365 VRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL  444 (672)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~  444 (672)
                      .......                                             ...++||.+++||+++++++.+.+...+
T Consensus       292 ~~~~~~~---------------------------------------------~~l~~lr~i~~gGe~l~~~~~~~~~~~~  326 (617)
T 3rg2_A          292 LIEGESR---------------------------------------------AQLASLKLLQVGGARLSATLAARIPAEI  326 (617)
T ss_dssp             HHTTCCT---------------------------------------------TTTTTCCEEEEESSCCCHHHHHHHHHHT
T ss_pred             hhccccc---------------------------------------------ccCCCccEEEEcCCcCCHHHHHHHHHHh
Confidence            4332110                                             0113899999999999999999999999


Q ss_pred             CCceecccCcccccccccccCCCC-CCCCccCCCc-CCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchh
Q 005874          445 GAPIGQGYGLTETCAGGTFSEVDD-SSVGRVGAPL-PCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEK  522 (672)
Q Consensus       445 ~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~~G~p~-~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~  522 (672)
                      +++++|.||+||++..++...... ....++|.|+ ++++++|+| +++..+   +.|+.|||||+|+++++||+++|+.
T Consensus       327 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~---p~G~~GEl~i~G~~v~~GY~~~p~~  402 (617)
T 3rg2_A          327 GCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVAD-AEGNPL---PQGEVGRLMTRGPYTFRGYYKSPQH  402 (617)
T ss_dssp             CSEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEEC-TTSCBC---CTTCCEEEEEECSSSCSCCTTCHHH
T ss_pred             CCcEEEEeccCcceeecccCCCcccccccCCCccCCCCceEEEEC-CCCCCC---CCCCceEEEecCccccchhcCChhh
Confidence            999999999999986544322211 1235789997 788999999 777655   5889999999999999999999999


Q ss_pred             hhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEE
Q 005874          523 TKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCV  599 (672)
Q Consensus       523 t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~v  599 (672)
                      |+++|.    .+|||+|||+|++++||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++..++   +.++
T Consensus       403 t~~~f~----~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~  477 (617)
T 3rg2_A          403 NASAFD----ANGFYCSGDLISIDPEGYITVQGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSC  477 (617)
T ss_dssp             HHHHBC----TTSCEEEEEEEEECTTSCEEEEEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEE
T ss_pred             hhhccC----CCCceecCceEEEcCCceEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEE
Confidence            999998    8899999999999999999999999999997 5999999999999999999999999987544   4688


Q ss_pred             EEEEcChhHHHHHHHHcChhhhhc-CCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHHHHh
Q 005874          600 ALVVASQPAVEEWAAKQGIVGKNA-RLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLAR  669 (672)
Q Consensus       600 a~v~~~~~~~~~~~~~~~~~~~~~-~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~~  669 (672)
                      |++++.+........    ..+.+ .||.|++|..+++++..|      +|++||++|++|++.+.+....
T Consensus       478 a~vv~~~~~~~~~l~----~~l~~~~lp~~~vP~~~~~v~~lP------~t~~GKidR~~L~~~~~~~~~~  538 (617)
T 3rg2_A          478 AYLVVKEPLRAVQVR----RFLREQGIAEFKLPDRVECVDSLP------LTAVGKVDKKQLRQWLASRASA  538 (617)
T ss_dssp             EEEEESSCCCHHHHH----HHHHTTTCCGGGSCSEEEECSCCC------BCTTSSBCHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHH----HHHHhCCCccccCCcEEEEecccC------CCCCCCCcHHHHHHHHhccccc
Confidence            998887643222222    44445 799999999999999988      9999999999999999876543

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=7e-73  Score=625.27  Aligned_cols=492  Identities=20%  Similarity=0.206  Sum_probs=394.5

Q ss_pred             CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874           57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI  136 (672)
Q Consensus        57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i  136 (672)
                      ..|+.++|++.++++||++|+.+            .|+           .+||+||.++++++|.+|.++|+++|++|++
T Consensus         3 ~~~l~~~l~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i   59 (521)
T 3l8c_A            3 LKDMIDSIEQFAQTQADFPVYDC------------LGE-----------RRTYGQLKRDSDSIAAFIDSLALLAKSPVLV   59 (521)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEE
T ss_pred             HHHHHHHHHHHHHHCCCCcceec------------CCC-----------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            46899999999999999999986            444           7999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccc
Q 005874          137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV  216 (672)
Q Consensus       137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~  216 (672)
                      +++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+                        
T Consensus        60 ~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~------------------------  115 (521)
T 3l8c_A           60 FGAQTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI------------------------  115 (521)
T ss_dssp             EECSSHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC------------------------
T ss_pred             EeCCCHHHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc------------------------
Confidence            99999999999999999999999999999999999999999999999987643211                        


Q ss_pred             cccccCCCeEEEeHHHHHhccc--CCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhh--cCCCCCC
Q 005874          217 SSVEQSGRWKITSFADVQILGR--ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI--VPDLGSK  292 (672)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~~  292 (672)
                            .......+.++.....  ..........++++++|+|||||||.||||++||+|+++.+......  + .+..+
T Consensus       116 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~  188 (521)
T 3l8c_A          116 ------EGISLVSLSEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAF-DVPKQ  188 (521)
T ss_dssp             ------TTSEEEEHHHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTT-CCCSS
T ss_pred             ------ccCcccchhhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcccc-CCCCC
Confidence                  1123344444433221  11122345678999999999999999999999999999988776665  4 78899


Q ss_pred             cEEEEecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhc
Q 005874          293 DVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAK  372 (672)
Q Consensus       293 d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~  372 (672)
                      +++++..|++|..++...+.++..|+++++.+.....+     ...+...++++++|++.++|+++..+.......    
T Consensus       189 ~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----  259 (521)
T 3l8c_A          189 PQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVAD-----FKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFC----  259 (521)
T ss_dssp             CEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTC-----HHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCS----
T ss_pred             CeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhC-----HHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccc----
Confidence            99999999999999888888999999999843221111     111222389999999999999998776421100    


Q ss_pred             CchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCceecc
Q 005874          373 GGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQG  451 (672)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~  451 (672)
                                                                 ....+++|.+++||+++++++.+.+.+.+ +++++++
T Consensus       260 -------------------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~  296 (521)
T 3l8c_A          260 -------------------------------------------QAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINA  296 (521)
T ss_dssp             -------------------------------------------TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEE
T ss_pred             -------------------------------------------cccCccceEEEEecccCCHHHHHHHHHHCCCceEEeC
Confidence                                                       01124899999999999999999998887 8999999


Q ss_pred             cCcccccccccccCCC-----CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhh
Q 005874          452 YGLTETCAGGTFSEVD-----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEV  526 (672)
Q Consensus       452 YG~TE~~~~~~~~~~~-----~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~  526 (672)
                      ||+||+++.++.....     ....+++|.|+++++++|+| +++..+   +.|+.|||+|+||+++.|||++|+.|++.
T Consensus       297 YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~~~  372 (521)
T 3l8c_A          297 YGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKEL---SSGEQGEIIVTGPAVSKGYLNNPEKTAEA  372 (521)
T ss_dssp             ECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBC---CTTCCEEEEEESTTSCSCBTTCHHHHHHH
T ss_pred             cCccHHhhhhceeecccccccCCCccccccccCCCEEEEEC-CCcCCC---CCCCceEEEecccccChhhcCCchHhhcc
Confidence            9999998776654322     23456899999999999999 777665   47899999999999999999999999999


Q ss_pred             cccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC----CeEEEEE
Q 005874          527 YKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH----SYCVALV  602 (672)
Q Consensus       527 ~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~----~~~va~v  602 (672)
                      |... +++|||+|||+|++|+||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++..+.    +.++|+|
T Consensus       373 f~~~-~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~v  450 (521)
T 3l8c_A          373 FFTF-KGQPAYHTGDIGSLTEDNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYI  450 (521)
T ss_dssp             EEEE-TTEEEEEEEEEEEECSSSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEE
T ss_pred             CcCC-CCceeeeCCCEEEEeCCCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEE
Confidence            8421 26789999999999999999999999999998 5999999999999999999999999986533    3589999


Q ss_pred             EcChhHHHH-----HHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874          603 VASQPAVEE-----WAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD  666 (672)
Q Consensus       603 ~~~~~~~~~-----~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~  666 (672)
                      +++++...+     ...+.....++++|+.|++|+.|+++++.|      +|++|||+|++|+++|+++
T Consensus       451 v~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP------~t~~GKidr~~L~~~~~~~  513 (521)
T 3l8c_A          451 VVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLP------LTPNGKIDIKTLINEVNNR  513 (521)
T ss_dssp             EECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCC------BCTTSSBCHHHHHHHTC--
T ss_pred             EecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccC------CCCCcCccHHHHhhhhhcC
Confidence            988753211     011111266778999999999999999988      9999999999999998764

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=1.3e-72  Score=631.78  Aligned_cols=475  Identities=17%  Similarity=0.164  Sum_probs=385.4

Q ss_pred             CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874           55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV  134 (672)
Q Consensus        55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V  134 (672)
                      ....|+.++|+++++++||++|+.+            .+.           .+||+||.++++++|++|+++|+++|++|
T Consensus        24 ~~~~tl~~~~~~~a~~~Pd~~Av~~------------~~~-----------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V   80 (620)
T 4dg8_A           24 YAHPTVVARFSEMAALHPHREAIRD------------RFG-----------SVDYRQLLDSAEQLSDYLLEHYPQPGVCL   80 (620)
T ss_dssp             GGSCCHHHHHHHHHHHCTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHHCCSSCCEE
T ss_pred             CCCCCHHHHHHHHHHhCCCCeEEEc------------CCC-----------cCcHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence            3457999999999999999999986            333           79999999999999999999999999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcc
Q 005874          135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS  214 (672)
Q Consensus       135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~  214 (672)
                      +|+++|++++++++|||+++|+++||+++.++.+++.++++++++++++++.......       ..+..+         
T Consensus        81 ~i~~~~s~~~vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~-------~~~~~~---------  144 (620)
T 4dg8_A           81 GVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA-------NGLPCV---------  144 (620)
T ss_dssp             EEESSSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC-------TTSCEE---------
T ss_pred             EEEeCCCHHHHHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc-------cCCcee---------
Confidence            9999999999999999999999999999999999999999999999999765432210       111110         


Q ss_pred             cccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcE
Q 005874          215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV  294 (672)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~  294 (672)
                                    .+....  ............++++++|+|||||||.||||+++|+++.+.+.. ...+ .+.++|+
T Consensus       145 --------------~~~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d~  206 (620)
T 4dg8_A          145 --------------PVRHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-AFAPQMR  206 (620)
T ss_dssp             --------------EGGGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-TTCTTCE
T ss_pred             --------------eeccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-CCCCCCE
Confidence                          010000  001111223346799999999999999999999999999877655 3345 7899999


Q ss_pred             EEEecChHhHHHHHHHHHHhHhCcEEeeC-----CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhh
Q 005874          295 YLAYLPLAHVLELVAENLIAGVGSAIGYG-----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKV  369 (672)
Q Consensus       295 ~l~~~pl~h~~~~~~~~~~l~~G~~i~~~-----~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~  369 (672)
                      +++++|++|..++..++.++..|+++++.     ++..+.+.           ++++++|+++++|+++..+.+....  
T Consensus       207 ~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~Ps~~~~l~~~~~~--  273 (620)
T 4dg8_A          207 FLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQL-----------IGERGADSAWLTASLFNTLVDLDPD--  273 (620)
T ss_dssp             EEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHHH-----------HHTTCCCEEEEEHHHHHHHHHHCGG--
T ss_pred             EEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHHH-----------HHHhCCcEEEccHHHHHHHHhcChh--
Confidence            99999999999999899999999999984     23333333           8999999999999999988752110  


Q ss_pred             hhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCce
Q 005874          370 DAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPI  448 (672)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v  448 (672)
                                                                      ..++||.+++||++++++..+.+...+ ++++
T Consensus       274 ------------------------------------------------~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l  305 (620)
T 4dg8_A          274 ------------------------------------------------CLGGLRQLLTGGDILSVPHVRRALLRHPRLHL  305 (620)
T ss_dssp             ------------------------------------------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEE
T ss_pred             ------------------------------------------------hCCCccEEEEEeCcCCHHHHHHHHHhCCCeEE
Confidence                                                            113899999999999988877776654 8999


Q ss_pred             ecccCcccccccccccCCC----CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhh
Q 005874          449 GQGYGLTETCAGGTFSEVD----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK  524 (672)
Q Consensus       449 ~~~YG~TE~~~~~~~~~~~----~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~  524 (672)
                      +|.||+||++..++.....    .....++|.|+++++++|+| +++...  ++.|..|||||+|+++++||+++|+.|+
T Consensus       306 ~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~--~~~g~~GEl~i~G~~v~~GY~~~p~~t~  382 (620)
T 4dg8_A          306 VNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLD-EHGQEI--AEPDRAGEIVAFGAGLAQGYRNDAARTR  382 (620)
T ss_dssp             EEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEEC-TTSCBC--CSSSCCEEEEEEETTCCSEETTCHHHHH
T ss_pred             EeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEEC-ccCCCC--CCCCCceEEEEeccccccccCCChhhhh
Confidence            9999999998876654322    23447899999999999999 666653  3578999999999999999999999999


Q ss_pred             hhcccCCCC-C--ceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCCC--eEE
Q 005874          525 EVYKVDDKG-M--RWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHS--YCV  599 (672)
Q Consensus       525 ~~~~~~~~~-~--gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~~--~~v  599 (672)
                      ++|..++.. .  +||+|||+|++++||.|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++..+..  .++
T Consensus       383 ~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv  461 (620)
T 4dg8_A          383 ASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLL  461 (620)
T ss_dssp             HHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEE
T ss_pred             hhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEE
Confidence            999744321 1  79999999999999999999999999998 69999999999999999999999999976553  466


Q ss_pred             EEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874          600 ALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       600 a~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                      ++++.......        ..+.++||.|++|+.+++++..|      +|++||++|++|++.|.+
T Consensus       462 ~~~~~~~~~~~--------~~l~~~Lp~y~~P~~~~~v~~lP------~t~~GKidR~~L~~~~~~  513 (620)
T 4dg8_A          462 CAWTGKADASP--------QALLRQLPTWQRPHACVRVEALP------LTAHGKLDRAALLRRLEE  513 (620)
T ss_dssp             EEEEECTTCCC--------HHHHHHSCGGGSCSEEEECSSCC------CC----CCHHHHHHHTCS
T ss_pred             EEEecChHHHH--------HHHHHhChhhcCCcEEEEECcCC------CCcccCHhHHHHhhcccc
Confidence            66665433221        44557899999999999999988      999999999999988754

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=4.9e-73  Score=670.61  Aligned_cols=515  Identities=24%  Similarity=0.283  Sum_probs=336.7

Q ss_pred             cCCCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCC
Q 005874           53 SWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEE  132 (672)
Q Consensus        53 ~~~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~  132 (672)
                      +.|...|++++|+++++++||++|+.+.+          +|+           .+||+||.++++++|++|+++|+++||
T Consensus        56 ~~p~~~tl~~~l~~~a~~~pd~~Al~~~~----------~~~-----------~~TY~eL~~~~~~lA~~L~~~Gv~~gd  114 (979)
T 3tsy_A           56 YIPNHLSLHDYIFQNISEFATKPCLINGP----------TGH-----------VYTYSDVHVISRQIAANFHKLGVNQND  114 (979)
T ss_dssp             CCCTTSCHHHHHTTTGGGTTTSEEEEETT----------TCC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTC
T ss_pred             CCCCCCCHHHHHHHHHHhCCCCeEEEECC----------CCc-----------EEEHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            34666899999999999999999998621          233           799999999999999999999999999


Q ss_pred             EEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCC
Q 005874          133 RVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANI  212 (672)
Q Consensus       133 ~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~  212 (672)
                      +|+|+++|+++|++++|||+++|+++||++|.++++++.+++++++++++|++.+..+.+....... .+ .++.++...
T Consensus       115 ~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~-~~~~~~~~~  192 (979)
T 3tsy_A          115 VVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-GV-VIVCIDDNE  192 (979)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-CC-EEEECCCCT
T ss_pred             EEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-Cc-eEEEeCCcc
Confidence            9999999999999999999999999999999999999999999999999999988776665554332 22 344444321


Q ss_pred             cccccccccCCCeEEEeHHHHHhcccC--CCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhc---C
Q 005874          213 PSAVSSVEQSGRWKITSFADVQILGRE--NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV---P  287 (672)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~---~  287 (672)
                      ...       ......+|.++......  ...+.....++++++|+|||||||.||||++||+++++.+.......   .
T Consensus       193 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~  265 (979)
T 3tsy_A          193 SVP-------IPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNL  265 (979)
T ss_dssp             TSC-------CCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSS
T ss_pred             ccc-------CCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccc
Confidence            110       01123455555433222  12233456789999999999999999999999999999887765422   1


Q ss_pred             CCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeC---CcccccCchhhhhcccccccccccceeeecchHHHHHHHH
Q 005874          288 DLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG---TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRD  363 (672)
Q Consensus       288 ~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~---~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~  363 (672)
                      .+.++|++++++|++|.+++.. .+.++..|+++++.   ++..+.+.           ++++++|++.++|+++..+.+
T Consensus       266 ~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~  334 (979)
T 3tsy_A          266 YFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLEL-----------IQRCKVTVAPMVPPIVLAIAK  334 (979)
T ss_dssp             CCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHHHH
T ss_pred             cCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHH-----------HHHhCCeEEEcHHHHHHHHHh
Confidence            6789999999999999999866 67789999999993   44444444           999999999999999998876


Q ss_pred             HHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHH
Q 005874          364 GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC  443 (672)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~  443 (672)
                      .....                                               ....++||.+++||+++++++.+.+++.
T Consensus       335 ~~~~~-----------------------------------------------~~~l~~lr~~~~gg~~l~~~~~~~~~~~  367 (979)
T 3tsy_A          335 SSETE-----------------------------------------------KYDLSSIRVVKSGAAPLGKELEDAVNAK  367 (979)
T ss_dssp             CGGGG-----------------------------------------------TSCCTTCCEEEESSCCCCSSHHHHHHHH
T ss_pred             Ccccc-----------------------------------------------CCCccceEEEEEcCCCCCHHHHHHHHHH
Confidence            32111                                               1122489999999999999999999998


Q ss_pred             h-CCceecccCcccccccccccC-----CCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCccccccc
Q 005874          444 L-GAPIGQGYGLTETCAGGTFSE-----VDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYF  517 (672)
Q Consensus       444 ~-~~~v~~~YG~TE~~~~~~~~~-----~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~  517 (672)
                      + +++++++||+||++++++...     ......+++|.|+++++++|+|++++..+   ++|+.|||+|+||++++|||
T Consensus       368 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~---~~g~~GEl~i~g~~v~~GY~  444 (979)
T 3tsy_A          368 FPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSL---SRNQPGEICIRGHQIMKGYL  444 (979)
T ss_dssp             CTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBC---CTTCCEEEEEESTTSCSEET
T ss_pred             CCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCC---CCCCccEEEEECCCcccccc
Confidence            8 899999999999987655431     22335588999999999999995556554   47899999999999999999


Q ss_pred             CCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC--
Q 005874          518 KNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH--  595 (672)
Q Consensus       518 ~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~--  595 (672)
                      ++|+.|++.|+    .+|||+|||+|++++||.|+|+||+||+||+ +|++|+|.+||++|.+||+|.+++|++.+++  
T Consensus       445 ~~p~~t~~~f~----~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~  519 (979)
T 3tsy_A          445 NNPAATAETID----KDGWLHTGDIGLIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAA  519 (979)
T ss_dssp             TCHHHHHHHBC----TTSCEEEEEEEEECTTSCEEEEEESCC--------------------------------------
T ss_pred             CChhhhhhhcc----CCCcEEcCCEEEEcCCceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCC
Confidence            99999999998    8899999999999999999999999999998 6999999999999999999999999997654  


Q ss_pred             -CeEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHHHHhhh
Q 005874          596 -SYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLARLY  671 (672)
Q Consensus       596 -~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~~ly  671 (672)
                       +.++|+|++.++...+..  .....++++|+.|++|+.++++++.|      +|++||++|++|++.|.+.+...|
T Consensus       520 g~~~~a~vv~~~~~~~~~~--~l~~~l~~~l~~~~~p~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~~~~~~  588 (979)
T 3tsy_A          520 GEVPVAFVVKSKDSELSED--DVKQFVSKQVVFYKRINKVFFTESIP------KAPSGKILRKDLRAKLANGLGSGM  588 (979)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             CcEEEEEEEECCCCCCCHH--HHHHHHHHhcccccCCeEEEEeCCcC------cCCCCCeeHHHHHHHHHhhcCCcc
Confidence             358999998766433322  22267788999999999999999987      999999999999999998887665

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=3.8e-72  Score=616.34  Aligned_cols=488  Identities=19%  Similarity=0.250  Sum_probs=370.8

Q ss_pred             CHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEc
Q 005874           59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFA  138 (672)
Q Consensus        59 tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~  138 (672)
                      |+.++|+++++++||++|+.+            .++           .+||+||.++++++|.+|+++   +||+|++++
T Consensus         2 tl~~~l~~~a~~~pd~~Al~~------------~~~-----------~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~   55 (501)
T 3ipl_A            2 SLDFWLYKQAQQNGHHIAITD------------GQE-----------SYTYQNLYCEASLLAKRLKAY---QQSRVGLYI   55 (501)
T ss_dssp             -CCCHHHHHHHHHTTSEEEEC------------SSC-----------EEEHHHHHHHHHHHHHHHHTT---CCSEEEEEC
T ss_pred             CHHHHHHHHHHhcCCceEEEe------------CCc-----------EEEHHHHHHHHHHHHHHHHHc---CCCEEEEEc
Confidence            677899999999999999985            333           799999999999999999987   899999999


Q ss_pred             CCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccccc
Q 005874          139 DTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSS  218 (672)
Q Consensus       139 ~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~  218 (672)
                      +|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+.......... .+.+..+........ .   
T Consensus        56 ~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~---  130 (501)
T 3ipl_A           56 DNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS-LDDIEFAGRDITTNG-L---  130 (501)
T ss_dssp             CSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE-TTC-----------------
T ss_pred             CCCHHHHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc-cccceeeeeeccccc-c---
Confidence            99999999999999999999999999999999999999999999999875443221110 111111111000000 0   


Q ss_pred             cccCCCeEEE-eHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEEE
Q 005874          219 VEQSGRWKIT-SFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA  297 (672)
Q Consensus       219 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~  297 (672)
                      .......... ..+.+...............++++++|+|||||||.||||++||+++++.+......+ +++++|++++
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-~~~~~d~~l~  209 (501)
T 3ipl_A          131 LDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-GFDRDTNWLS  209 (501)
T ss_dssp             -------------------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-CCCTTCEEEE
T ss_pred             cccccccccccchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-CCCccCEEEE
Confidence            0000000000 0011111011011122345689999999999999999999999999999999888888 8999999999


Q ss_pred             ecChHhHHHHHHHHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCc
Q 005874          298 YLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGG  374 (672)
Q Consensus       298 ~~pl~h~~~~~~~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~  374 (672)
                      ++|++|.+++...+.++..|+++++   +++..+.+.           ++++++|+++++|+++..|.+.....      
T Consensus       210 ~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~------  272 (501)
T 3ipl_A          210 VLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTM-----------IKNERITHISLVPQTLNWLMQQGLHE------  272 (501)
T ss_dssp             CSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHSCCCEEEECHHHHHHHHHHTCCS------
T ss_pred             eCcHHHHHHHHHHHHHHHcCceEEeCCCCCHHHHHHH-----------HHHcCCcEEEchHHHHHHHHhcCCCC------
Confidence            9999999999888889999999999   345555555           99999999999999999887632100      


Q ss_pred             hhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCc
Q 005874          375 LSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGL  454 (672)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~  454 (672)
                                                                  ..+||.+++||+++++++.+.++. +++++++.||+
T Consensus       273 --------------------------------------------~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~  307 (501)
T 3ipl_A          273 --------------------------------------------PYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGM  307 (501)
T ss_dssp             --------------------------------------------CTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEE
T ss_pred             --------------------------------------------cCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccc
Confidence                                                        017999999999999999999887 59999999999


Q ss_pred             ccccccccccCCC--CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCC
Q 005874          455 TETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDK  532 (672)
Q Consensus       455 TE~~~~~~~~~~~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~  532 (672)
                      ||+++.++.....  ....+++|.|+++++++|+| ++        +++.|||+|+|+++++||+++|+.|.. |     
T Consensus       308 TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~--------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-----  372 (501)
T 3ipl_A          308 TETCSQFLTATPEMLHARPDTVGMPSANVDVKIKN-PN--------KEGHGELMIKGANVMNGYLYPTDLTGT-F-----  372 (501)
T ss_dssp             GGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEES-CC--------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-----
T ss_pred             cccccceeecCccccccCCCCCCCCCCCcEEEEec-CC--------CCCccEEEEeccchhhhhCcChhhcch-h-----
Confidence            9998755443332  23557899999999999999 32        346799999999999999999999987 5     


Q ss_pred             CCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCCC---eEEEEEEcChhHH
Q 005874          533 GMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFHS---YCVALVVASQPAV  609 (672)
Q Consensus       533 ~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~~---~~va~v~~~~~~~  609 (672)
                      .+|||+|||+|++++||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++.   .++++|++.....
T Consensus       373 ~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~  451 (501)
T 3ipl_A          373 ENGYFNTGDIAEIDHEGYVMIYDRRKDLIIS-GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDIS  451 (501)
T ss_dssp             ETTEEEEEEEEEECTTSCEEEEEECCCCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCC
T ss_pred             cCCceecCCEEEEcCCCeEEEEccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCCC
Confidence            6899999999999999999999999999996 69999999999999999999999999976553   5788888765433


Q ss_pred             HHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874          610 EEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD  666 (672)
Q Consensus       610 ~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~  666 (672)
                      .+...    ..++++|+.|++|+.|+++++.|      +|++||++|++|++.+++.
T Consensus       452 ~~~l~----~~l~~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~l~~~~~~~  498 (501)
T 3ipl_A          452 KAQLI----AYLSKHLAKYKVPKHFEKVDTLP------YTSTGKLQRNKLYREGHHH  498 (501)
T ss_dssp             HHHHH----HHHHHHSCGGGSCSEEEECSSCC-------------------------
T ss_pred             HHHHH----HHHHhhCccccCCCEEEEecccC------CCCCCCEeHHHHhhccccc
Confidence            33222    66678999999999999999988      9999999999999988764

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=3e-72  Score=616.25  Aligned_cols=473  Identities=24%  Similarity=0.321  Sum_probs=372.7

Q ss_pred             CCCCHHHHHHHHHHHcCC-CCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874           56 GISTLAELFEQSCKEHGD-KYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV  134 (672)
Q Consensus        56 ~~~tl~~~~~~~a~~~pd-~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V  134 (672)
                      .+.|+.++|.++++++|+ ++|+.+            +++           .+||+||.++++++|.+|.     .|++|
T Consensus        20 ~~~tl~~~l~~~a~~~p~d~~Al~~------------~~~-----------~~Ty~eL~~~~~~~A~~L~-----~~~~V   71 (505)
T 3nyq_A           20 HMSSLFPALSPAPTGAPADRPALRF------------GER-----------SLTYAELAAAAGATAGRIG-----GAGRV   71 (505)
T ss_dssp             ----CCTTTSSCCCSGGGGSEEEEE------------TTE-----------EEEHHHHHHHHHHHHTTCC--------CE
T ss_pred             ccchhHHHHHHHHHhCCCCCeEEEE------------CCe-----------eeeHHHHHHHHHHHHhhcc-----CCCEE
Confidence            467888999999999887 999986            443           7999999999999998875     38899


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcc
Q 005874          135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS  214 (672)
Q Consensus       135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~  214 (672)
                      +++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+...     ......+..+.. +.    
T Consensus        72 ~i~~~~~~~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~-~~----  141 (505)
T 3nyq_A           72 AVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL-----PPALGALERVDV-DV----  141 (505)
T ss_dssp             EEECCSSHHHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC-----CGGGTTSEEEEC-CT----
T ss_pred             EEEcCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc-----chhhcccccccc-cc----
Confidence            99999999999999999999999999999999999999999999999999865210     001111211111 00    


Q ss_pred             cccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcE
Q 005874          215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV  294 (672)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~  294 (672)
                                            ......+.....++++++|+|||||||.||||++||+++++.+..+...+ .++++|+
T Consensus       142 ----------------------~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~  198 (505)
T 3nyq_A          142 ----------------------RARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-QWTGEDV  198 (505)
T ss_dssp             ----------------------TCCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-TCCTTCE
T ss_pred             ----------------------ccccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-CCCCCcE
Confidence                                  00111223445678999999999999999999999999999999988888 8999999


Q ss_pred             EEEecChHhHHHHHH-HHHHhHhCcEEeeC---CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhh
Q 005874          295 YLAYLPLAHVLELVA-ENLIAGVGSAIGYG---TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD  370 (672)
Q Consensus       295 ~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~---~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~  370 (672)
                      +++.+|++|..++.. .+.++..|+++++.   ++..+.+.           + ++++|+++++|+++..+.+.......
T Consensus       199 ~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i-~~~~t~~~~~P~~~~~l~~~~~~~~~  266 (505)
T 3nyq_A          199 LVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARE-----------L-NDGATMLFGVPTMYHRIAETLPADPE  266 (505)
T ss_dssp             EEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHH-----------H-TTTCCEEEECHHHHHHHHHHGGGCHH
T ss_pred             EEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHH-----------H-hhCCeEEEehHHHHHHHHHhhhcCch
Confidence            999999999999876 77889999999983   33333333           6 67999999999999998874322110


Q ss_pred             hcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceec
Q 005874          371 AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQ  450 (672)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~  450 (672)
                      .                                            ....+++|.+++||+++++++.+.++..+++++++
T Consensus       267 ~--------------------------------------------~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~  302 (505)
T 3nyq_A          267 L--------------------------------------------AKALAGARLLVSGSAALPVHDHERIAAATGRRVIE  302 (505)
T ss_dssp             H--------------------------------------------HHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEE
T ss_pred             h--------------------------------------------hcccccceEEEECCCCCCHHHHHHHHHhcCCeeec
Confidence            0                                            00012789999999999999999999999999999


Q ss_pred             ccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccC
Q 005874          451 GYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVD  530 (672)
Q Consensus       451 ~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~  530 (672)
                      .||+||+++.++.........+++|.|+++++++|+| +++..++..+.|+.|||+|+|++++.|||++|+.|++.|.  
T Consensus       303 ~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~--  379 (505)
T 3nyq_A          303 RYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFT--  379 (505)
T ss_dssp             EEEETTTEEEEECCTTSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBC--
T ss_pred             ccchhhcccccccCCCCCCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhc--
Confidence            9999999887776665566678999999999999999 7777665445588999999999999999999999999997  


Q ss_pred             CCCCceEecCcEEEEccCceEEEEecC-CCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcCh
Q 005874          531 DKGMRWFYTGDVGQVHADGCLEIIDRK-KDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQ  606 (672)
Q Consensus       531 ~~~~gw~~TGDlg~~~~dG~l~i~gR~-~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~  606 (672)
                        .+|||+|||+|++++||.|+++||+ ||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.+
T Consensus       380 --~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~  456 (505)
T 3nyq_A          380 --EDGFFRTGDMAVRDPDGYVRIVGRKATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPAD  456 (505)
T ss_dssp             --TTSCEEEEEEEEECTTSCEEEEEESSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS
T ss_pred             --CCCCCccCCeEEECCCccEEEeCCccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECC
Confidence              7899999999999999999999998 599997 6999999999999999999999999997654   46999999876


Q ss_pred             hH---HHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHH
Q 005874          607 PA---VEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRK  661 (672)
Q Consensus       607 ~~---~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~  661 (672)
                      ..   ..+...    ..++++|+.|++|+.|+++++.|      +|++||++|++|++
T Consensus       457 ~~~~~~~~~l~----~~l~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~  504 (505)
T 3nyq_A          457 PAAPPALGTLA----DHVAARLAPHKRPRVVRYLDAVP------RNDMGKIMKRALNR  504 (505)
T ss_dssp             TTSCCCHHHHH----HHHHHHTCGGGSCSEEEECSCCC------C-------------
T ss_pred             CCCCCCHHHHH----HHHHhhCCCCcCccEEEEECCCC------CCCCcCeeHHhhcc
Confidence            32   111122    66778999999999999999988      99999999999986

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=6.7e-70  Score=611.21  Aligned_cols=502  Identities=19%  Similarity=0.185  Sum_probs=394.7

Q ss_pred             CCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 005874           55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV  134 (672)
Q Consensus        55 ~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V  134 (672)
                      ....|+.++|+++++++||++|+.+.+           +        +..+++||+||.++++++|.+|.++|+++||+|
T Consensus         8 ~~~~tl~~~l~~~a~~~p~~~a~~~~~-----------~--------~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V   68 (590)
T 3kxw_A            8 LQCQSLVDVVRLRALHSPNKKSCTFLN-----------K--------ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRV   68 (590)
T ss_dssp             HTCSSHHHHHHHHHHHCTTSEEEEEEE-----------T--------TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred             cCcccHHHHHHHHHHhCCCCeEEEEEc-----------C--------CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence            455899999999999999999998742           1        123589999999999999999999999999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCcEEEecCCCC---CHHHHHHHHhcccceEEEECccchHHHHhhh-cCCCCccEEEEecC
Q 005874          135 AIFADTRAEWFVALQGCFRRNVTVVTIYASL---GEEALCYSLNETEVTTVICGSKELKKLVDLS-GQLDTVKHVICMDA  210 (672)
Q Consensus       135 ~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~-~~~~~l~~ii~~~~  210 (672)
                      +++++|++++++++|||+++|++++|+++.+   +.+++.++++.+++++++++.+....+.... ...+....      
T Consensus        69 ~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~------  142 (590)
T 3kxw_A           69 LLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLK------  142 (590)
T ss_dssp             EEECCSSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETT------
T ss_pred             EEEcCCchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccc------
Confidence            9999999999999999999999999999988   4578999999999999999987665544322 12221111      


Q ss_pred             CCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCC
Q 005874          211 NIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG  290 (672)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~  290 (672)
                                    ..+...+++.... .....+....++++++|+|||||||.||||++||+++++.+......+ +++
T Consensus       143 --------------~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~  206 (590)
T 3kxw_A          143 --------------IPAIALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-HMN  206 (590)
T ss_dssp             --------------EEEEEGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-TCC
T ss_pred             --------------cceeechhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-CCC
Confidence                          1122222221111 112233456789999999999999999999999999999999988888 999


Q ss_pred             CCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeC-------CcccccCchhhhhcccccccccccceeeecchHHHHHHH
Q 005874          291 SKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG-------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVR  362 (672)
Q Consensus       291 ~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~-------~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~  362 (672)
                      ++|++++++|++|.+++.. .+.+++.|+++++.       +|..+.+.           ++++++|++.++|.++..+.
T Consensus       207 ~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~~~~l~  275 (590)
T 3kxw_A          207 DETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKH-----------ITKYKATISGSPNFAYDYCV  275 (590)
T ss_dssp             TTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHH-----------HHHHTCSEEEECTHHHHHHH
T ss_pred             CcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHH-----------HHHhCCeeecCChhHHHHHH
Confidence            9999999999999999987 78889999999984       44445555           99999999999999999887


Q ss_pred             HHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHH
Q 005874          363 DGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINI  442 (672)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~  442 (672)
                      +.+......                                            ....++||.+++||+++++++.+.+++
T Consensus       276 ~~~~~~~~~--------------------------------------------~~~l~~lr~~~~gg~~l~~~~~~~~~~  311 (590)
T 3kxw_A          276 KRIREEKKE--------------------------------------------GLDLSSWVTAFNGAEPVREETMEHFYQ  311 (590)
T ss_dssp             HHCCGGGGT--------------------------------------------TCCCTTCCEEEECSSCCCHHHHHHHHH
T ss_pred             HHhhhhhcc--------------------------------------------CCCchhhHHHhhCCCCCCHHHHHHHHH
Confidence            643221110                                            112358999999999999999999998


Q ss_pred             HhC------CceecccCcccccccccccCCC---------------------------CCCCCccCCCcCCeEEEEEecC
Q 005874          443 CLG------APIGQGYGLTETCAGGTFSEVD---------------------------DSSVGRVGAPLPCSFIKLIDWP  489 (672)
Q Consensus       443 ~~~------~~v~~~YG~TE~~~~~~~~~~~---------------------------~~~~~~~G~p~~~~~v~i~d~~  489 (672)
                      .++      ++++++||+||+++.++.....                           ....+++|.|+++  ++|+|.+
T Consensus       312 ~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~  389 (590)
T 3kxw_A          312 AFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPD  389 (590)
T ss_dssp             HHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTT
T ss_pred             HHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCC
Confidence            873      4799999999998876643221                           1123678999988  8899943


Q ss_pred             CCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCC--C--CCceEecCcEEEEccCceEEEEecCCCeEecCC
Q 005874          490 EGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDD--K--GMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQH  565 (672)
Q Consensus       490 ~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~--~--~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~  565 (672)
                      ++..+   ++|+.|||+|+||+++.|||++|+.|++.|....  +  +.+||+|||+|+++ ||.|+|+||+||+||+ +
T Consensus       390 ~~~~~---~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~  464 (590)
T 3kxw_A          390 TLIPC---DFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-Y  464 (590)
T ss_dssp             TCCBC---CTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-H
T ss_pred             CCcCC---CCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-C
Confidence            35443   5889999999999999999999999999996431  1  23399999999999 9999999999999998 6


Q ss_pred             ceeeccHHHHHHH-hcCcccc--eEEEEecCCC--CeEEEEEEcChhHHHHHHHHcChhhhhcCCCC-Cccee-EEEEee
Q 005874          566 GEYVSLGKVEAAL-IVSPYVD--NIMMHADPFH--SYCVALVVASQPAVEEWAAKQGIVGKNARLDK-FEIPA-KIKLLS  638 (672)
Q Consensus       566 G~~v~p~~iE~~l-~~~~~V~--~~~V~g~~~~--~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~-~~~p~-~i~~~~  638 (672)
                      |++|+|.+||++| ..+|.|.  +|+|++.+++  +.+++++++.+....+...+.....+++.|+. +++|. .+.+++
T Consensus       465 G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~  544 (590)
T 3kxw_A          465 GKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIP  544 (590)
T ss_dssp             HHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETTEEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEE
T ss_pred             CEecCHHHHHHHHHhcCccccCccEEEEEecCCCCceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEEEEC
Confidence            9999999999999 8899998  7888886443  46888888776431111111111455566774 67775 666664


Q ss_pred             --cCCCCCCCccccccccChHHHHHHHHH
Q 005874          639 --YPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       639 --~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                        +.|      +|++|||+|++|+++|.+
T Consensus       545 ~~~lP------~t~sGKi~R~~L~~~~~~  567 (590)
T 3kxw_A          545 LKAMP------HTTSGKIRRNFCRKHLLD  567 (590)
T ss_dssp             TTCSC------CCSCHHHHHHHHHHHHHH
T ss_pred             CCccC------cCCCcHHHHHHHHHHHHc
Confidence              565      999999999999999976

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=4.4e-69  Score=652.30  Aligned_cols=485  Identities=21%  Similarity=0.257  Sum_probs=398.0

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF  137 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~  137 (672)
                      .+++++|+++++++||++|+.+            .++           .+||+||.++++++|++|.+.|+++|++|+|+
T Consensus       464 ~~l~~~~~~~~~~~p~~~Av~~------------~~~-----------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~  520 (1304)
T 2vsq_A          464 KPLTYWFKEAVNANPDAPALTY------------SGQ-----------TLSYRELDEEANRIARRLQKHGAGKGSVVALY  520 (1304)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEES------------SSC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred             CCHHHHHHHHHHhCCCCeEEEE------------CCe-----------eEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEE
Confidence            7899999999999999999986            333           79999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCccccc
Q 005874          138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS  217 (672)
Q Consensus       138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~  217 (672)
                      ++|++++++++|||+++|+++||++|.++.+++.++++++++++++++.+....+.    .++.....+.+++..     
T Consensus       521 ~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~~~~~~~~~~~~-----  591 (1304)
T 2vsq_A          521 TKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA----ELPYTGTTLFIDDQT-----  591 (1304)
T ss_dssp             CCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST----TCCCCSEEEESSCGG-----
T ss_pred             eCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh----ccCCCCcEEEecccc-----
Confidence            99999999999999999999999999999999999999999999999976543221    122222333322210     


Q ss_pred             ccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEEE
Q 005874          218 SVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA  297 (672)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~  297 (672)
                                    .   .......+.....++++|+|+|||||||.||||+++|+++++. ......+ .++++|++++
T Consensus       592 --------------~---~~~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-~~~~~d~~l~  652 (1304)
T 2vsq_A          592 --------------R---FEEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-AFSDQDTFLS  652 (1304)
T ss_dssp             --------------G---GGSCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-CCCTTCEEEE
T ss_pred             --------------c---cccccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-CCCCCCEEEE
Confidence                          0   0001111223456899999999999999999999999999875 3333445 7889999999


Q ss_pred             ecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhH
Q 005874          298 YLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSK  377 (672)
Q Consensus       298 ~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~  377 (672)
                      +.|++|..+.+.++.+|..|+++++.++....+.     ..+...++++++|+++++|++++.+.+.....         
T Consensus       653 ~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~-----~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~---------  718 (1304)
T 2vsq_A          653 VSNYAFDAFTFDFYASMLNAARLIIADEHTLLDT-----ERLTDLILQENVNVMFATTALFNLLTDAGEDW---------  718 (1304)
T ss_dssp             CSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCH-----HHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHH---------
T ss_pred             ECCccHHHHHHHHHHHHHcCCEEEECChhhcCCH-----HHHHHHHHHcCCcEEEccHHHHHHHHhhchhc---------
Confidence            9999999998889999999999999544332221     11222389999999999999999886521000         


Q ss_pred             HHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCceecccCccc
Q 005874          378 KLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQGYGLTE  456 (672)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE  456 (672)
                                                               .++||.+++||++++++..+.+...+ +++++|+||+||
T Consensus       719 -----------------------------------------~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE  757 (1304)
T 2vsq_A          719 -----------------------------------------MKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTE  757 (1304)
T ss_dssp             -----------------------------------------HHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGG
T ss_pred             -----------------------------------------CCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhH
Confidence                                                     02799999999999999988888776 478999999999


Q ss_pred             ccccccccCCC----CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCC-
Q 005874          457 TCAGGTFSEVD----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDD-  531 (672)
Q Consensus       457 ~~~~~~~~~~~----~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~-  531 (672)
                      ++..++.....    .....++|.|+++++++|+| +++..+   +.|..|||||+|+++++||+++|+.|+++|..++ 
T Consensus       758 ~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~---p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~  833 (1304)
T 2vsq_A          758 GTVFATAHVVHDLPDSISSLPIGKPISNASVYILN-EQSQLQ---PFGAVGELCISGMGVSKGYVNRADLTKEKFIENPF  833 (1304)
T ss_dssp             GSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCBC---CTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTT
T ss_pred             HhHHheeeeccCccccCCCCCCceeeCCCEEEEEC-CCcCCC---CCCCceEEEEeccccCccccCCcccchhhhccCCC
Confidence            99877655432    22346899999999999999 666554   5889999999999999999999999999997553 


Q ss_pred             -CCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcChh
Q 005874          532 -KGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQP  607 (672)
Q Consensus       532 -~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~~  607 (672)
                       ++++||+|||+|++++||.|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++..+.   ..++|+|++...
T Consensus       834 ~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~  912 (1304)
T 2vsq_A          834 KPGETLYRTGDLARWLPDGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQ  912 (1304)
T ss_dssp             STTCEEEEEEEEEEECTTSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSS
T ss_pred             CCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCC
Confidence             46789999999999999999999999999998 5999999999999999999999999997643   479999998763


Q ss_pred             HHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHH
Q 005874          608 AVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAF  663 (672)
Q Consensus       608 ~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~  663 (672)
                      ...+...    ..++++||.|++|..+++++..|      +|++||++|++|.+.+
T Consensus       913 ~~~~~l~----~~l~~~Lp~ymvP~~~~~l~~lP------~t~~GKidR~~L~~~~  958 (1304)
T 2vsq_A          913 LSAEDVK----AHLKKQLPAYMVPQTFTFLDELP------LTTNGKVNKRLLPKPD  958 (1304)
T ss_dssp             SCHHHHH----HHHHHHSCGGGSCSEEEEESCCC------CCSSCSSCCSCCCCCC
T ss_pred             CCHHHHH----HHHHHhChHhhhccEEEEecccC------CCCCcccCHhhcCCcc
Confidence            3222222    56678999999999999999988      9999999999886543

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=4.3e-69  Score=600.34  Aligned_cols=505  Identities=20%  Similarity=0.220  Sum_probs=310.2

Q ss_pred             CCCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCE
Q 005874           54 WEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEER  133 (672)
Q Consensus        54 ~~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~  133 (672)
                      +....|+.++|+++++++||++|+.+.+-.        .+.     ..+..+.+||+||.++++++|+.|.+.|+ +||+
T Consensus        16 ~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~--------~~~-----~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~   81 (562)
T 3ite_A           16 YTSTVPPSHYIETWAKTHPEWKAVEVATGF--------LGS-----QKIVTEDWTYKKLNETANQVANLIIHASL-HGRA   81 (562)
T ss_dssp             --CCCCTTHHHHHHHHHCTTSEEEEEEECC------------------CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCE
T ss_pred             ecccCCHHHHHHHHHHHCCCchhhhccccc--------ccc-----cccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCE
Confidence            455689999999999999999999874210        000     01234689999999999999999999999 7999


Q ss_pred             EEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCc
Q 005874          134 VAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIP  213 (672)
Q Consensus       134 V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~  213 (672)
                      |+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++++....+     ..+....++....   
T Consensus        82 V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~---  153 (562)
T 3ite_A           82 IAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDTKN---  153 (562)
T ss_dssp             EEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEETTC---
T ss_pred             EEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeecccc---
Confidence            99999999999999999999999999999999999999999999999999987654321     1111111111100   


Q ss_pred             ccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhc-------
Q 005874          214 SAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV-------  286 (672)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-------  286 (672)
                                    ..+.+....... ........++++++|+|||||||.||||++||+++.+.+..+...+       
T Consensus       154 --------------~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~  218 (562)
T 3ite_A          154 --------------QSFIENLSTQDT-SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKS  218 (562)
T ss_dssp             --------------HHHHHHHHHSCC-SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             --------------hhhhhhcccccc-cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchh
Confidence                          012222221111 1122344578899999999999999999999999998877655432       


Q ss_pred             CCCCCCcEEEEecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHH
Q 005874          287 PDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVR  366 (672)
Q Consensus       287 ~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~  366 (672)
                      ..+...+++++..|+.|..++...+.++..|+++++.......+       .+...++++++|++.++|++++.+...  
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~-------~~~~~i~~~~~t~~~~~P~~l~~~~~~--  289 (562)
T 3ite_A          219 LELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLD-------DLPRTFRELGVTHAGIVPSLLDQTGLV--  289 (562)
T ss_dssp             GGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHH-------SHHHHHHHTTCCEEEECHHHHHHHTCC--
T ss_pred             cccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHH-------HHHHHHHHcCCCEEEcCHHHHhhcccC--
Confidence            15788999999999999998888888999999999844322111       122338999999999999987654220  


Q ss_pred             HhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCC
Q 005874          367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGA  446 (672)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~  446 (672)
                        .                                               ...++||.+++||+++++++.+.++..+++
T Consensus       290 --~-----------------------------------------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~  320 (562)
T 3ite_A          290 --P-----------------------------------------------EDAPHLVYLGVGGEKMTPRTQQIWSSSDRV  320 (562)
T ss_dssp             --G-----------------------------------------------GGSTTCCEEEEESSCCCHHHHHHHTTCSSC
T ss_pred             --c-----------------------------------------------cccCceEEEEEecCCCCHHHHHHHhhCCCc
Confidence              0                                               012489999999999999999999998899


Q ss_pred             ceecccCcccccccccccCC-CCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhh
Q 005874          447 PIGQGYGLTETCAGGTFSEV-DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKE  525 (672)
Q Consensus       447 ~v~~~YG~TE~~~~~~~~~~-~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~  525 (672)
                      +++++||+||++..++.... .....+++|.|+++++++|+|.+.+..+   ++|+.|||+|+||+++.|||++|+.|+.
T Consensus       321 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~---~~g~~GEl~v~g~~v~~GY~~~p~~t~~  397 (562)
T 3ite_A          321 ALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHV---KKGMAGELVIEGSLVANGYLNRPDAKGF  397 (562)
T ss_dssp             EEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBC---CTTSCEEEEEESTTSCCEESSCTTCCSE
T ss_pred             EEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCC---CCCCceEEEEeccccchhhCCCcccccc
Confidence            99999999999877665443 3345578999999999999994344443   5889999999999999999999999886


Q ss_pred             hcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcC-cccceEEEEecCCCC----eEEE
Q 005874          526 VYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVS-PYVDNIMMHADPFHS----YCVA  600 (672)
Q Consensus       526 ~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~-~~V~~~~V~g~~~~~----~~va  600 (672)
                      .+.   ++++||+|||+|++|+||.|+|+||+||+||+ +|++|+|.+||++|.+| |.+.+++|++..++.    .+++
T Consensus       398 ~~~---~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~  473 (562)
T 3ite_A          398 CDI---NGRKMYRTGDIVRMDADSSILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVS  473 (562)
T ss_dssp             EEE---TTEEEEEEEEEEEECTTSCEEEEEEC------------------------------------------------
T ss_pred             ccC---CCCEEEecCCEEEEcCCCeEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEE
Confidence            652   14569999999999999999999999999997 69999999999999888 778888888866542    2445


Q ss_pred             EEEcChhHHHHH----------HHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccc-cccccChHHHHHHHHHH
Q 005874          601 LVVASQPAVEEW----------AAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVT-AALKIKREAIRKAFADD  666 (672)
Q Consensus       601 ~v~~~~~~~~~~----------~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t-~~gKi~R~~l~~~~~~~  666 (672)
                      ++..........          ..+....+++++|+.|++|+.|+++++.|      +| ++||++|++|+++|++.
T Consensus       474 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP------~t~~~GKi~r~~L~~~~~~~  544 (562)
T 3ite_A          474 FVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIP------LRDTSAKTDAKALEHMFHTL  544 (562)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             EEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCC------CCCCCCcchHHHHHHHHhcc
Confidence            554433322110          01122267778999999999999999987      88 89999999999999763

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=5.6e-58  Score=501.40  Aligned_cols=401  Identities=21%  Similarity=0.232  Sum_probs=312.2

Q ss_pred             CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874           57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI  136 (672)
Q Consensus        57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i  136 (672)
                      ..|+.++|+++++++||++|+.+.+..        ++.      .|..+.+||+||.++++++|++|+++|+ +||+|+|
T Consensus        23 ~~tl~~~l~~~a~~~pd~~Al~~~~~~--------~~~------~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i   87 (480)
T 3t5a_A           23 VRSLPAALRACARLQPHDPAFTFMDYE--------QDW------DGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVI   87 (480)
T ss_dssp             -CCHHHHHHHHHHHSTTSEEEEEEETT--------TCT------TCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEE
T ss_pred             cccHHHHHHHHHHhCCCCceEEEeccc--------CCC------CCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEE
Confidence            478999999999999999999975311        111      2345789999999999999999999996 9999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCcEEEecCC---CCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCc--cEEEEecCC
Q 005874          137 FADTRAEWFVALQGCFRRNVTVVTIYA---SLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTV--KHVICMDAN  211 (672)
Q Consensus       137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l--~~ii~~~~~  211 (672)
                      +++|+++|++++|||+++|+++||+++   .++.+++.+++++++++++|++.+....+.+.....+..  ..++.++..
T Consensus        88 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (480)
T 3t5a_A           88 SAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLL  167 (480)
T ss_dssp             ECCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGS
T ss_pred             EcCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEeccc
Confidence            999999999999999999999999999   788999999999999999999998887777654433321  122222111


Q ss_pred             CcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCC
Q 005874          212 IPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGS  291 (672)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~  291 (672)
                                            .. ............++++++|+|||||||.||||++||+|+++.+......+ .+..
T Consensus       168 ----------------------~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~  223 (480)
T 3t5a_A          168 ----------------------DL-DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-FADT  223 (480)
T ss_dssp             ----------------------CT-TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-CTTT
T ss_pred             ----------------------cc-ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-cccc
Confidence                                  10 01111223455678999999999999999999999999999988888777 6666


Q ss_pred             ------CcEEEEecChHhHHHHHH-HHHHhHhCcEEeeC-------CcccccCchhhhhcccccccccccceeeecchHH
Q 005874          292 ------KDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG-------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAI  357 (672)
Q Consensus       292 ------~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~-------~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~  357 (672)
                            +|++++++|++|.+++.. ++.+++.|+++++.       ++..+.+.           ++++++| +.++|.+
T Consensus       224 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~-----------i~~~~~t-~~~~p~~  291 (480)
T 3t5a_A          224 DGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHL-----------MASDFHA-FSAAPNF  291 (480)
T ss_dssp             TTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHH-----------TTSSSEE-EEEECHH
T ss_pred             ccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHH-----------HHhhcee-EeeChHH
Confidence                  999999999999999775 67889999999984       44444444           9999999 8899998


Q ss_pred             HHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHH
Q 005874          358 LDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQ  437 (672)
Q Consensus       358 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~  437 (672)
                      +..++........                                           ......++||.+++||+++++++.
T Consensus       292 ~~~l~~~~~~~~~-------------------------------------------~~~~~l~~lr~i~~gG~~l~~~~~  328 (480)
T 3t5a_A          292 AFELAARRTTDDD-------------------------------------------MAGRDLGNILTILSGSERVQAATI  328 (480)
T ss_dssp             HHHHHHHHCCTGG-------------------------------------------GTTCCCTTCCEEEECCTTCCHHHH
T ss_pred             HHHHHHhhcCccc-------------------------------------------ccccchhhhheeeecCCcCCHHHH
Confidence            8887653211000                                           011223589999999999999999


Q ss_pred             HHHHHHhC------CceecccCcccccccccccCCCC-------------------------CCCCccCCCcCCeEEEEE
Q 005874          438 RFINICLG------APIGQGYGLTETCAGGTFSEVDD-------------------------SSVGRVGAPLPCSFIKLI  486 (672)
Q Consensus       438 ~~~~~~~~------~~v~~~YG~TE~~~~~~~~~~~~-------------------------~~~~~~G~p~~~~~v~i~  486 (672)
                      +.+++.++      +.++++||+||+++.++......                         ...+++|.|++ ++++|+
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~iv  407 (480)
T 3t5a_A          329 KRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIV  407 (480)
T ss_dssp             HHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEE
T ss_pred             HHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEE
Confidence            99999874      46999999999998776654321                         22358999999 999999


Q ss_pred             ecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcc-------cCCCCCceEecCcEEEEccCceEEEEec
Q 005874          487 DWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYK-------VDDKGMRWFYTGDVGQVHADGCLEIIDR  556 (672)
Q Consensus       487 d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~-------~~~~~~gw~~TGDlg~~~~dG~l~i~gR  556 (672)
                      |.+++..+   +.|+.|||||+||+++.|||++|+.|+++|.       ...+++|||+|||+|+++ ||.|+|+||
T Consensus       408 d~~~g~~~---~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          408 DSDTCIEC---PDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             ETTTTEEC---CTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred             cCCCCcCC---CCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence            94335544   5889999999999999999999999999995       222367899999999997 999999998

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=1.5e-51  Score=430.46  Aligned_cols=312  Identities=19%  Similarity=0.237  Sum_probs=262.0

Q ss_pred             CCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCcEEEEecChHhHHHHHHHHHHhHhCcEEeeCC-ccc
Q 005874          249 SADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGT-PLT  327 (672)
Q Consensus       249 ~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~-~~~  327 (672)
                      .|++++|+|||||||.||||++||+|+++.+......+ +++++|++++++|++|++++...+.++..|+++++.+ ...
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~  114 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN  114 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc
Confidence            47899999999999999999999999999999988888 9999999999999999999998888999999998833 333


Q ss_pred             ccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHH
Q 005874          328 LTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWN  407 (672)
Q Consensus       328 l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (672)
                      ....           ++++++|++.++|+++..+++.....                                       
T Consensus       115 ~~~~-----------i~~~~~t~~~~~P~~l~~ll~~~~~~---------------------------------------  144 (358)
T 4gs5_A          115 PLAG-----------LDHADFDFVAMVPMQLQSILENSATS---------------------------------------  144 (358)
T ss_dssp             TTTT-----------CSSCCCSEEEECHHHHHHHHHCTTTG---------------------------------------
T ss_pred             HHHH-----------HHHhCCeEEEcChHHHHHhhcccccc---------------------------------------
Confidence            4444           89999999999999999987632111                                       


Q ss_pred             HHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCcccccccccccCCCCCCCCccCCCcCCeEEEEEe
Q 005874          408 LLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLID  487 (672)
Q Consensus       408 ~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d  487 (672)
                               ...++||.+++||+++++++.+++++ ++++++++||+||+++.++....+....+.+|.+.|++++.+.+
T Consensus       145 ---------~~l~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~~  214 (358)
T 4gs5_A          145 ---------GQVDRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVDE  214 (358)
T ss_dssp             ---------GGGGGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEECT
T ss_pred             ---------ccCCcceEEEEcccCCCchheecccc-cCceEEeccccccccceeecccccccccceeeccCCCeEEEecC
Confidence                     01138999999999999999999987 49999999999999988887777777788999999999887644


Q ss_pred             cCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCce
Q 005874          488 WPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGE  567 (672)
Q Consensus       488 ~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~  567 (672)
                                    .|||+++|+..                    .+|||+|||+|++|+|| ++++||+||+||+ +|+
T Consensus       215 --------------~Gel~~~g~~~--------------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~  258 (358)
T 4gs5_A          215 --------------RGCLHISGAVT--------------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGV  258 (358)
T ss_dssp             --------------TSEEEEESGGG--------------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTE
T ss_pred             --------------cCceEEecccc--------------------cCcceecCCccccccCc-eEEcccccCeEEE-CCE
Confidence                          59999998642                    67899999999999888 6778999999997 699


Q ss_pred             eeccHHHHHHH---hcCcccceEEEE-ecCCC---CeEEEEEEcChhHHHH-HHHHcChhhhhcCCCCCcceeEEEEeec
Q 005874          568 YVSLGKVEAAL---IVSPYVDNIMMH-ADPFH---SYCVALVVASQPAVEE-WAAKQGIVGKNARLDKFEIPAKIKLLSY  639 (672)
Q Consensus       568 ~v~p~~iE~~l---~~~~~V~~~~V~-g~~~~---~~~va~v~~~~~~~~~-~~~~~~~~~~~~~L~~~~~p~~i~~~~~  639 (672)
                      +|+|.+||++|   ..||.|.+++|+ +.+++   +.++|+|+........ ...    .+++++|+.|++|+.|+++++
T Consensus       259 ~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~~~~~~l~----~~l~~~L~~~~~P~~i~~v~~  334 (358)
T 4gs5_A          259 KIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPEALTERLT----AEIRSRVSTYENPKHIYFAKA  334 (358)
T ss_dssp             EEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCHHHHHHHH----HHHHHHSCGGGSCSCEEEESS
T ss_pred             EECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCCCcCHHHHH----HHHHhhCCCCCCceEEEEECC
Confidence            99999999877   468999998876 44444   3588888877654322 122    667789999999999999999


Q ss_pred             CCCCCCCccccccccChHHHHHHHHHHH
Q 005874          640 PWTSEAGLVTAALKIKREAIRKAFADDL  667 (672)
Q Consensus       640 ~~~~~~~~~t~~gKi~R~~l~~~~~~~i  667 (672)
                      .|      +|++|||+|++|+++|.+..
T Consensus       335 lP------~t~~GKi~R~~L~~~l~e~~  356 (358)
T 4gs5_A          335 FA------KTQTDKIDKRATFQKLSDSS  356 (358)
T ss_dssp             CC------BCTTSCBCHHHHHHHTC---
T ss_pred             cC------CCCCCChhHHHHHHHhhhhc
Confidence            87      99999999999999987754

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=3.4e-45  Score=394.50  Aligned_cols=322  Identities=16%  Similarity=0.146  Sum_probs=247.4

Q ss_pred             CCCC-CCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHh---hcCCCCCCcEEEEecChHhHHHHH-HHHHHhHhCcEE
Q 005874          246 YPVS-ADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT---IVPDLGSKDVYLAYLPLAHVLELV-AENLIAGVGSAI  320 (672)
Q Consensus       246 ~~~~-d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~d~~l~~~pl~h~~~~~-~~~~~l~~G~~i  320 (672)
                      ...+ +++++|+|||||||.||||++||+++.+....+..   .+ +++++|++++++|+.|..+.+ ..+.++..|+++
T Consensus        81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~  159 (436)
T 3qov_A           81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMV-GIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLT  159 (436)
T ss_dssp             CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHT-TCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEE
T ss_pred             cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHc-CCCCCCEEEECcccccchhHHHHHHHHHHcCCEE
Confidence            3445 89999999999999999999999999877665533   34 789999999999997666554 467789999999


Q ss_pred             eeC---CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcC
Q 005874          321 GYG---TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFG  397 (672)
Q Consensus       321 ~~~---~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (672)
                      ++.   ++..+.+.           +++++||+++++|+++..|.+.........                         
T Consensus       160 ~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~-------------------------  203 (436)
T 3qov_A          160 VPAAAGNSKRQIKF-----------ISDFKTTALHAIPSYAIRLAEVFQEEGIDP-------------------------  203 (436)
T ss_dssp             ECCCSCCHHHHHHH-----------HHHHTCCEEECCHHHHHHHHHHHHHTTCCT-------------------------
T ss_pred             EeCCCCCHHHHHHH-----------HHHHCCCEEEECHHHHHHHHHHHHHcCCCc-------------------------
Confidence            983   34444444           999999999999999999987654322110                         


Q ss_pred             CCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCcccccccccccCCCCCCCCccCCC
Q 005874          398 AWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAP  477 (672)
Q Consensus       398 ~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p  477 (672)
                                          ..+++|.+++||+++++++.+.+++.+|++++++||+||+++.+......  .....|.|
T Consensus       204 --------------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~g~~~~  261 (436)
T 3qov_A          204 --------------------RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ--EQNGMHFW  261 (436)
T ss_dssp             --------------------TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT--TCSSEEEC
T ss_pred             --------------------ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC--CCCeeEEc
Confidence                                01389999999999999999999999999999999999996543222211  11236777


Q ss_pred             cCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccCc------e-
Q 005874          478 LPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADG------C-  550 (672)
Q Consensus       478 ~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG------~-  550 (672)
                      .++++++|+|++++..+   ++|+.|||+|+|..            ++.|     .++||+|||+|+++++|      . 
T Consensus       262 ~~~~~v~i~d~~~g~~~---~~g~~Gel~v~~~~------------~~~~-----~~~~y~TGDl~~~~~~gc~cG~~~~  321 (436)
T 3qov_A          262 EDCYLVEIIDPETGEPV---PEGEIGELVLTTLD------------REMM-----PLIRYRTRDLTRILPGKCPCGRTHL  321 (436)
T ss_dssp             TTTEEEEEECTTTCSBC---STTCCEEEEEEESS------------CCSS-----CCCSEEEEEEECEECSCCTTCCCSC
T ss_pred             cCceEEEEEECCCCCCC---CCCCceEEEEeccC------------cCCc-----eEEEEEcCCEEEEcCCCCCCCCCcc
Confidence            78999999996566655   47899999999842            2334     67899999999999998      4 


Q ss_pred             --EEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCC---CCeEEEEEEcChhHHH----HHHHHcChhhh
Q 005874          551 --LEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPF---HSYCVALVVASQPAVE----EWAAKQGIVGK  621 (672)
Q Consensus       551 --l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~---~~~~va~v~~~~~~~~----~~~~~~~~~~~  621 (672)
                        ++|+||+||+||+ +|++|+|.+||++|.+||+|.+++|++..+   .+.++|+|+++ +...    +.....  ..+
T Consensus       322 ~il~i~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~~~~~~~~~~l~--~~l  397 (436)
T 3qov_A          322 RIDRIKGRSDDMFII-KGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLSTDNYIELEKIR--RDI  397 (436)
T ss_dssp             EECCCCCBSSSCEEE-TTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTCCCCHHHHHHHH--HHH
T ss_pred             ccCcccCccCCEEEE-CCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-CccccchhhHHHHH--HHH
Confidence              6999999999998 699999999999999999999999988654   35699999988 3211    111111  455


Q ss_pred             hcCCCCC-cceeEEEEee--cCCCCCCCccccccccChH
Q 005874          622 NARLDKF-EIPAKIKLLS--YPWTSEAGLVTAALKIKRE  657 (672)
Q Consensus       622 ~~~L~~~-~~p~~i~~~~--~~~~~~~~~~t~~gKi~R~  657 (672)
                      ++.|+.+ +.|..+.+++  ..|      +|+ ||++|.
T Consensus       398 ~~~l~~~~~~p~~i~~v~~~~lP------~t~-GKi~R~  429 (436)
T 3qov_A          398 IRQLKDEILVTPKVKLVKKGSLP------QSE-GKAVRV  429 (436)
T ss_dssp             HHHHHHHHSSCCEEEEECTTCCC--------------CE
T ss_pred             HHHHHHhcCCceEEEEeCCCccc------CcC-CcceEE
Confidence            6778888 8899999998  666      999 999985

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=6.6e-45  Score=393.05  Aligned_cols=343  Identities=16%  Similarity=0.106  Sum_probs=260.2

Q ss_pred             EEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHh---hcCCCCCCcEEEEecCh-H
Q 005874          227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT---IVPDLGSKDVYLAYLPL-A  302 (672)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~d~~l~~~pl-~  302 (672)
                      +.+.+++....   +.......++++++++|||||||.||||++||+++......+..   .+ +++++|++++.+|+ .
T Consensus        72 ~~~~~~l~~~~---p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~~  147 (443)
T 2y4o_A           72 FSTKNDLRDNY---PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAA-GGRPGDTLHNAFGYGL  147 (443)
T ss_dssp             CBCHHHHHTTT---TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSS
T ss_pred             CCcHHHHHhhC---CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEeccCcc
Confidence            44556665432   11223345689999999999999999999999999876555443   45 78999999999999 5


Q ss_pred             hHHHHHHHHHHhHhCcEEeeC---CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhHHH
Q 005874          303 HVLELVAENLIAGVGSAIGYG---TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKL  379 (672)
Q Consensus       303 h~~~~~~~~~~l~~G~~i~~~---~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~  379 (672)
                      |..++...+.++..|+++++.   ++..+.+.           ++++++|+++++|+++..|.+.........       
T Consensus       148 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~-------  209 (443)
T 2y4o_A          148 FTGGLGIHYGAERLGCMVVPMSGGQTEKQVQL-----------IRDFEPKIILVTPSYMLNLIDEMVRQGMDP-------  209 (443)
T ss_dssp             SHHHHHHHHHHHHHTCEEECCCSCCHHHHHHH-----------HHHHCCSEEEECHHHHHHHHHHHHHTTCCG-------
T ss_pred             cccHHHHHHHHHHcCCEEEECCCCCHHHHHHH-----------HHHhCCcEEEECHHHHHHHHHHHHHcCCCc-------
Confidence            777777778889999999883   44444444           999999999999999999987543321100       


Q ss_pred             HHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCcccccc
Q 005874          380 FDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCA  459 (672)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~  459 (672)
                                                            ..+++|.+++||+++++++.+.+++.+|+++++.||+||+++
T Consensus       210 --------------------------------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g  251 (443)
T 2y4o_A          210 --------------------------------------AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMG  251 (443)
T ss_dssp             --------------------------------------GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTE
T ss_pred             --------------------------------------ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcC
Confidence                                                  013899999999999999999999989999999999999854


Q ss_pred             c-ccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEe
Q 005874          460 G-GTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFY  538 (672)
Q Consensus       460 ~-~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~  538 (672)
                      . .+..... ... ..+.|.++++++|+|++++..+   +.|+.|||+|+|.            +++.|     .++||+
T Consensus       252 ~~~~~~~~~-~~~-g~~~~~~~~~~~i~d~~~g~~~---~~G~~Gel~v~~~------------t~~~~-----p~~~y~  309 (443)
T 2y4o_A          252 PGVACECVE-TKD-GPVIWEDHFYPEIIDPVTGEVL---PDGSQGELVFTSL------------TKEAM-----PVIRYR  309 (443)
T ss_dssp             EEEEEECTT-TCC-SEEECTTTEEEEEECTTTCCBC---CTTCCEEEEEEES------------SCSSS-----CCSSEE
T ss_pred             CeEEeccCC-CCC-ceEEccCCeEEEEEcCCCCCCC---CCCCceEEEEeCC------------CcccC-----hhheee
Confidence            3 3322221 111 2455678999999994456554   4789999999983            23344     578999


Q ss_pred             cCcEEEEccC-ceE-----EEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCC---CCeEEEEEEcCh--h
Q 005874          539 TGDVGQVHAD-GCL-----EIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPF---HSYCVALVVASQ--P  607 (672)
Q Consensus       539 TGDlg~~~~d-G~l-----~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~---~~~~va~v~~~~--~  607 (672)
                      |||+|+++++ |.+     +++||+||+||+ +|++|+|.+||++|.+||+|.+++|++..+   .+.++++|++++  +
T Consensus       310 TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~  388 (443)
T 2y4o_A          310 TRDLTALLPPTARAMRRLAKITGRSDDMLIV-RGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAA  388 (443)
T ss_dssp             EEEEECEECCSSSSSCEECCCCEESSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHH
T ss_pred             cCCEEEEcCCCCCCccccCccccccCCeEEE-CCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCccc
Confidence            9999999999 987     899999999998 599999999999999999999999887432   356899999886  2


Q ss_pred             H---HHHHHHHcChhhhhcCCCCC-cceeEEEEee--cCCCCCCCccccccccChHHHH
Q 005874          608 A---VEEWAAKQGIVGKNARLDKF-EIPAKIKLLS--YPWTSEAGLVTAALKIKREAIR  660 (672)
Q Consensus       608 ~---~~~~~~~~~~~~~~~~L~~~-~~p~~i~~~~--~~~~~~~~~~t~~gKi~R~~l~  660 (672)
                      .   ..+....  ...++++|+.+ .+|..|.+++  +.|      +|++||++|+..+
T Consensus       389 ~~~~~~~~~~l--~~~l~~~l~~~~~~p~~v~~v~~~~lP------~t~~GKi~r~~~~  439 (443)
T 2y4o_A          389 ASVTDGERAAL--ARELQHRIKTMVGVSSGVTVLAAGGIP------ATATGKARRVIDR  439 (443)
T ss_dssp             TTCCHHHHHHH--HHHHHHHHHHHTCCCCEEEEECTTCSC------CCTTSCCCSEEEC
T ss_pred             ccchhhHHHHH--HHHHHHHHHHHhCCceEEEEeCCCccc------CccCCcceEEEec
Confidence            1   1111111  15566788876 4888888885  565      9999999997543

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=3.1e-44  Score=387.16  Aligned_cols=340  Identities=16%  Similarity=0.108  Sum_probs=259.4

Q ss_pred             EEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHh---hcCCCCCCcEEEEecCh-H
Q 005874          227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT---IVPDLGSKDVYLAYLPL-A  302 (672)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~d~~l~~~pl-~  302 (672)
                      +.+.+++....   +.......++++++++|||||||.||+|++||+++......+..   .+ +++++|++++.+|+ .
T Consensus        70 ~~~~~~l~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~  145 (437)
T 2y27_A           70 FTTKGDLRDSY---PFGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAA-GARRGDKVHVSYGYGL  145 (437)
T ss_dssp             CBCHHHHHHTT---TTTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSS
T ss_pred             CCCHHHHHhcC---CCccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEcccccc
Confidence            34455655432   11223345689999999999999999999999999876654433   45 78999999999998 6


Q ss_pred             hHHHHHHHHHHhHhCcEEeeC---CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhHHH
Q 005874          303 HVLELVAENLIAGVGSAIGYG---TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKL  379 (672)
Q Consensus       303 h~~~~~~~~~~l~~G~~i~~~---~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~  379 (672)
                      |..++...+.++..|+++++.   ++..+.+.           +++++||+++++|+++..|.+.........       
T Consensus       146 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~-------  207 (437)
T 2y27_A          146 FTGGLGAHYGAERAGLTVIPFGGGQTEKQVQL-----------IQDFRPDIIMVTPSYMLSIADEIERQGLDP-------  207 (437)
T ss_dssp             SHHHHHHHHHHHHTTCEEECCCSCCHHHHHHH-----------HHHHCCSEEEECHHHHHHHHHHHHHTTCCG-------
T ss_pred             cccchHHHHHHHHcCCEEEeCCCCCHHHHHHH-----------HHHhCCCEEEECHHHHHHHHHHHHHcCCCc-------
Confidence            888877788889999999873   34444444           999999999999999999987544321100       


Q ss_pred             HHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecccCcccccc
Q 005874          380 FDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCA  459 (672)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE~~~  459 (672)
                                                            ..+++|.+++||+++++++.+.+++.+|+++++.||+||+++
T Consensus       208 --------------------------------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g  249 (437)
T 2y27_A          208 --------------------------------------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMG  249 (437)
T ss_dssp             --------------------------------------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTE
T ss_pred             --------------------------------------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcC
Confidence                                                  013899999999999999999999988999999999999854


Q ss_pred             c-ccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEe
Q 005874          460 G-GTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFY  538 (672)
Q Consensus       460 ~-~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~  538 (672)
                      . ++..... .. ..++.|.++++++|+|++++..+   +.|+.|||+|+|.            |++.|     .++||+
T Consensus       250 ~~~~~~~~~-~~-~g~~~~~~~~~~~i~d~~~g~~~---~~g~~Gel~v~~~------------t~~~~-----~~~~y~  307 (437)
T 2y27_A          250 PGVASECVE-TK-DGPTIWEDHFYPEIIDPETGEVL---PDGELGELVFTSL------------TKEAL-----PIIRYR  307 (437)
T ss_dssp             EEEEECCTT-TC-SSCEECTTTEEEEEECTTTCCBC---CTTCCEEEEEEES------------SCSSS-----CCCSEE
T ss_pred             CeeEEecCC-CC-CceeEccCceEEEEEcCCCCCCC---CCCCccEEEEecC------------CcCCc-----hhheee
Confidence            3 3332221 11 12556678999999994456554   4789999999983            23344     578999


Q ss_pred             cCcEEEEcc-CceE-----EEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecC---CCCeEEEEEEcChhHH
Q 005874          539 TGDVGQVHA-DGCL-----EIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADP---FHSYCVALVVASQPAV  609 (672)
Q Consensus       539 TGDlg~~~~-dG~l-----~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~---~~~~~va~v~~~~~~~  609 (672)
                      |||+|++++ ||.+     ++.||+||+||+ +|++|+|.+||++|.+||+|.+++|++..   ..+.++|+|+++++..
T Consensus       308 TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~  386 (437)
T 2y27_A          308 TRDLTRLLPGTARTMRRMEKITGRSDDMMIV-RGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETA  386 (437)
T ss_dssp             EEEEECEECCSSSSSCEECCCCEEGGGCEEE-TTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTT
T ss_pred             cCCEEEEeCCCCCCccccCccccccCCeEEE-CCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCcc
Confidence            999999998 6985     999999999998 69999999999999999999998888743   2356999999886532


Q ss_pred             ---HHHHHHcChhhhhcCCCCC-cceeEEEEee--cCCCCCCCccccccccChHH
Q 005874          610 ---EEWAAKQGIVGKNARLDKF-EIPAKIKLLS--YPWTSEAGLVTAALKIKREA  658 (672)
Q Consensus       610 ---~~~~~~~~~~~~~~~L~~~-~~p~~i~~~~--~~~~~~~~~~t~~gKi~R~~  658 (672)
                         .+...  ....+++.|+.+ .+|..|.+++  +.|      +|+ ||++|..
T Consensus       387 ~~~~~~~~--l~~~l~~~l~~~~~~p~~v~~v~~~~lP------~t~-GKi~r~~  432 (437)
T 2y27_A          387 PDTAAIQV--AKQALAYDIKSLIGVTAVINVLPVNGIE------RSV-GKARRVV  432 (437)
T ss_dssp             TCHHHHHH--HHHHHHHHHHHHHCCCEEEEECCTTCSC------CCS-SSCCCEE
T ss_pred             chhhhHHH--HHHHHHHHHHHhcCCceEEEEeCCCCcc------CCC-CcceEEE
Confidence               11111  115567888888 5888888885  555      999 9999964

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.95  E-value=2.7e-28  Score=256.47  Aligned_cols=247  Identities=15%  Similarity=0.129  Sum_probs=170.5

Q ss_pred             CCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhc--CCCCCCcEEEEecCh-HhHHHHHHHHHHhHhCcEEee-
Q 005874          247 PVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV--PDLGSKDVYLAYLPL-AHVLELVAENLIAGVGSAIGY-  322 (672)
Q Consensus       247 ~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~~d~~l~~~pl-~h~~~~~~~~~~l~~G~~i~~-  322 (672)
                      ..++++++|+|||||||.||+|+++|+++.+....+...+  .+++++|++++.+|+ +|..++...+.++..|+.++. 
T Consensus        88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~  167 (369)
T 3hgu_A           88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI  167 (369)
T ss_dssp             SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred             CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence            3678899999999999999999999999999887654332  267899999999999 999999888888999994433 


Q ss_pred             -CCccc---ccCc---------hhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHh
Q 005874          323 -GTPLT---LTDT---------SSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLS  389 (672)
Q Consensus       323 -~~~~~---l~~~---------~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (672)
                       ++|..   +...         .......+...++++++|+++++|+++..|++.....                     
T Consensus       168 ~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~---------------------  226 (369)
T 3hgu_A          168 DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV---------------------  226 (369)
T ss_dssp             CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH---------------------
T ss_pred             cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh---------------------
Confidence             33330   0000         0000112222389999999999999999987642110                     


Q ss_pred             hhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHH-HHh-CCceecccCcccccccccccCCC
Q 005874          390 AINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFIN-ICL-GAPIGQGYGLTETCAGGTFSEVD  467 (672)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~-~~~-~~~v~~~YG~TE~~~~~~~~~~~  467 (672)
                                                ....+++|.+++||+++++++.+.++ +.+ ++++++.||+||+++++..... 
T Consensus       227 --------------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-  279 (369)
T 3hgu_A          227 --------------------------LQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-  279 (369)
T ss_dssp             --------------------------HHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred             --------------------------ccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence                                      00112799999999999999999999 888 8999999999999866532211 


Q ss_pred             CCCCCccCCC------cCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCc
Q 005874          468 DSSVGRVGAP------LPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGD  541 (672)
Q Consensus       468 ~~~~~~~G~p------~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGD  541 (672)
                          .++|.|      .++++++|+|.+++..+   ++|+.|||+|++...            +.+.      -+|+|||
T Consensus       280 ----~~~G~~~~~~~~~~~~~v~ivD~~~g~~v---p~G~~GEl~vt~l~~------------~~~l------~ry~tgD  334 (369)
T 3hgu_A          280 ----TSESQQVIYDSFSPFITYDVVDSITAQTV---EYGERGNVIVTHLSP------------WAFY------PRVAERD  334 (369)
T ss_dssp             ----CTTCSSCEEECCTTTEEEEEECTTTCSBC---CTTCEEEEEEEEEET------------TEEE------EEEEEEE
T ss_pred             ----ccCCCcccccCCCCCeEEEEECCCCCcCC---CCCCceEEEEEEcCc------------cccc------ccccCCc
Confidence                148999      99999999994366655   489999999997431            1111      2689999


Q ss_pred             EEEEccC--c-------eEEEEecCCCeEecCCce
Q 005874          542 VGQVHAD--G-------CLEIIDRKKDIVKLQHGE  567 (672)
Q Consensus       542 lg~~~~d--G-------~l~i~gR~~d~ik~~~G~  567 (672)
                      ++...+.  |       .+..++|.++..++. |.
T Consensus       335 ~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~-gv  368 (369)
T 3hgu_A          335 TAIRLPGVSGFAGDRLADIEPLKISEGRKVIE-GV  368 (369)
T ss_dssp             EEEEECCSTTCSSCEEEEEEECC------------
T ss_pred             eEEEecCCCCCcCcccccceeccccCCCceee-ec
Confidence            9987543  2       356677777777764 64

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=98.98  E-value=9e-11  Score=98.90  Aligned_cols=93  Identities=15%  Similarity=0.045  Sum_probs=59.6

Q ss_pred             ecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEEcChhHH---HHHHHHcChhhhhcCCCC-
Q 005874          555 DRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVVASQPAV---EEWAAKQGIVGKNARLDK-  627 (672)
Q Consensus       555 gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~~~~~~~---~~~~~~~~~~~~~~~L~~-  627 (672)
                      .|.||+|++ +|.+|+|.+||+++.+||+|.+++|++.+++   +.++++|+..+...   .......  ..+.+.+.. 
T Consensus         1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~--~~i~~~l~~~   77 (109)
T 3lax_A            1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALT--REITRQLKDE   77 (109)
T ss_dssp             CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHH--HHHHHHHHHH
T ss_pred             CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhH--HHHHHHHHHH
Confidence            489999998 5999999999999999999999998886544   35778887665421   1111000  222233322 


Q ss_pred             CcceeEEEEee--cCCCCCCCccccccccChH
Q 005874          628 FEIPAKIKLLS--YPWTSEAGLVTAALKIKRE  657 (672)
Q Consensus       628 ~~~p~~i~~~~--~~~~~~~~~~t~~gKi~R~  657 (672)
                      +.++..+.+++  .+|      +| +||++|-
T Consensus        78 ~gv~~~v~~v~~~~lP------rt-sGKi~Rv  102 (109)
T 3lax_A           78 ILVTPRVKLVPKGALP------KS-EGKAVRV  102 (109)
T ss_dssp             HSSCCEEEEECTTCSC------CC----CCCE
T ss_pred             hCCccceEEEcCCeec------CC-CCCcchh
Confidence            12444677775  354      88 7999883

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.64  E-value=2.3e-07  Score=100.17  Aligned_cols=148  Identities=18%  Similarity=0.240  Sum_probs=91.7

Q ss_pred             cCCc---eEEEEEcCCCCCHHHHHHHHHHh-CCcee-cccCcccccccccccCCCCCCCCccCC-CcCC-eEEEEEecCC
Q 005874          418 LGGR---IRFILSGGAPLSADTQRFINICL-GAPIG-QGYGLTETCAGGTFSEVDDSSVGRVGA-PLPC-SFIKLIDWPE  490 (672)
Q Consensus       418 ~~~~---lr~i~~gG~~l~~~~~~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~-~~v~i~d~~~  490 (672)
                      +.++   +..++.||.   ......++..+ +.+++ .+|++||+...  ++.......+..+. .+|+ .-+..++.++
T Consensus       300 lWPnlk~l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g--i~~~p~~~p~~~~~~L~p~~~ffEFIP~~~  374 (609)
T 4b2g_A          300 IWPNTKYLDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECYFG--LNLNPMSKPSEVSYTIMPNMAYFEFLPHEH  374 (609)
T ss_dssp             HSTTCCEEEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCEEE--ECSCTTSCGGGCCEEECTTSCEEEEEEGGG
T ss_pred             hCCCCcEEEEEccCCh---HHHHHHHHHHcCCCccccCcccccceeee--eecCCCCCcccCceeecCCcEEEEEEeccc
Confidence            3466   445555663   33345555544 67776 99999996432  22211111122222 1222 4455555333


Q ss_pred             C------Cc------ccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEcc----CceEEEE
Q 005874          491 G------GY------LTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHA----DGCLEII  554 (672)
Q Consensus       491 ~------~~------~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~----dG~l~i~  554 (672)
                      .      ..      +...+.|+.+||.|+..   .|.|                  -|++||+.++..    ..++.|+
T Consensus       375 ~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~---~GL~------------------RYr~GD~v~v~~f~~~~p~i~~~  433 (609)
T 4b2g_A          375 SSIPLSRDSPPRLVDLAHVEVGKEYELVITTY---AGLY------------------RYRVGDILRVTGFHNSAPQFHFV  433 (609)
T ss_dssp             TTSCCCSSSCCCCEEGGGCCTTCEEEEEEECT---TSCC------------------SEEEEEEEEEEEEETTEEEEEEE
T ss_pred             cccccccCCCCccccHhHcCCCCeEEEehhhh---hhhh------------------heecCCEEEEeecCCCCcEEEEE
Confidence            2      10      12356889999999754   3444                  399999999973    4689999


Q ss_pred             ecCCCeEecCCceeeccHHHHHHHhc-C-----cc--cceEEEEec
Q 005874          555 DRKKDIVKLQHGEYVSLGKVEAALIV-S-----PY--VDNIMMHAD  592 (672)
Q Consensus       555 gR~~d~ik~~~G~~v~p~~iE~~l~~-~-----~~--V~~~~V~g~  592 (672)
                      ||.++++.+ .|+++++.+||+++.+ +     .+  |.|-.++.+
T Consensus       434 gR~~~~l~~-~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d  478 (609)
T 4b2g_A          434 RRKNVLLSI-DSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFAD  478 (609)
T ss_dssp             EETTCCBCS-SSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEE
T ss_pred             EecCCeEEc-cccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecC
Confidence            999999997 5999999999999952 2     22  556665554

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.58  E-value=3.1e-07  Score=98.98  Aligned_cols=136  Identities=18%  Similarity=0.217  Sum_probs=87.7

Q ss_pred             cCCc---eEEEEEcCCCCCHHHHHHHHHHh-CCcee-cccCcccccccccccCCCCCCCCccCCC-cCC-eEEEEEecCC
Q 005874          418 LGGR---IRFILSGGAPLSADTQRFINICL-GAPIG-QGYGLTETCAGGTFSEVDDSSVGRVGAP-LPC-SFIKLIDWPE  490 (672)
Q Consensus       418 ~~~~---lr~i~~gG~~l~~~~~~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~G~p-~~~-~~v~i~d~~~  490 (672)
                      +.++   +..+++||.   ......++..+ +.+++ .+|++||+...  ++..........|.. +|+ +-+..++.++
T Consensus       295 lWPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g--i~~~p~~~~~~~~~~L~~~~~ffEFip~~~  369 (581)
T 4eql_A          295 LWPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETTFG--INLDPLCKPEDVSYTFMPNMSYFEFIPMDG  369 (581)
T ss_dssp             HSTTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCEEE--ECSCTTSCGGGCCEEECTTSSEEEEEECST
T ss_pred             hCCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccceee--eccCCCCCcccCceeecCCcEEEEEEeccc
Confidence            4457   556666773   33345555554 67777 99999996322  222111111223322 222 4455665333


Q ss_pred             CC-----cccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEcc----CceEEEEecCCCeE
Q 005874          491 GG-----YLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHA----DGCLEIIDRKKDIV  561 (672)
Q Consensus       491 ~~-----~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~----dG~l~i~gR~~d~i  561 (672)
                      .+     .+...+.|+.+||.++..+   |.|                  -|++||+.++..    ..++.|+||.++++
T Consensus       370 ~~~~~~v~l~eVe~G~~YelViTt~~---GL~------------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l  428 (581)
T 4eql_A          370 GDKNDVVDLEDVKLGCTYEPVVTNFA---GLY------------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVL  428 (581)
T ss_dssp             TCCSSCEEGGGCCTTCEEEEEEECSS---SCC------------------SEECCEEEEEEEEETTEEEEEEEEETTEEE
T ss_pred             cCCCcEeCHHHcCCCceEEEEEeecc---cee------------------eEEcCCEEEEcccCCCCcEEEEEEecCCEE
Confidence            21     1223568899999998753   322                  499999999975    45899999999999


Q ss_pred             ecCCceeeccHHHHHHHhc
Q 005874          562 KLQHGEYVSLGKVEAALIV  580 (672)
Q Consensus       562 k~~~G~~v~p~~iE~~l~~  580 (672)
                      .+ .|+++++++||+++.+
T Consensus       429 ~~-~Gekl~~~~v~~al~~  446 (581)
T 4eql_A          429 SI-DSDKTNEEDLFKAVSQ  446 (581)
T ss_dssp             CS-SSCCEEHHHHHHHHHH
T ss_pred             Ee-eeeECCHHHHHHHHHH
Confidence            98 5999999999999963

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.45  E-value=1.4e-06  Score=93.62  Aligned_cols=162  Identities=16%  Similarity=0.131  Sum_probs=96.2

Q ss_pred             HcCCceEEE--EEcCCCCCHHHHHHHHHHh-CCcee-cccCcccccccccccCCCCCCCCccCC-CcCC-eEEEEEecCC
Q 005874          417 ILGGRIRFI--LSGGAPLSADTQRFINICL-GAPIG-QGYGLTETCAGGTFSEVDDSSVGRVGA-PLPC-SFIKLIDWPE  490 (672)
Q Consensus       417 ~~~~~lr~i--~~gG~~l~~~~~~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~-~~v~i~d~~~  490 (672)
                      .+.++++.|  +.+|..  ......++..+ +.+++ .+|++||+...  ++.......+..+. .+|+ .-+..++.++
T Consensus       299 ~lWPnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g--i~~~p~~~~~~~~~~L~p~~~ffEFiP~~~  374 (581)
T 4epl_A          299 ALFPNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEGWIA--ANVTPRLSPEEATFAVIPNLGYFEFLPVSE  374 (581)
T ss_dssp             HHCTTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTEEEE--ECCCTTSCTTTCCEEECTTSCEEEEEEC--
T ss_pred             HhCCCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceeccceeee--eecCCCCCccccceeecCCcEEEEEEeccc
Confidence            455788532  334422  22345555555 67777 99999996432  22222222222222 2233 3344454322


Q ss_pred             CC-------cccCCCCCCccEEEEccCcccccccCCchhhhhhcccCCCCCceEecCcEEEEccC----ceEEEEecCCC
Q 005874          491 GG-------YLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHAD----GCLEIIDRKKD  559 (672)
Q Consensus       491 ~~-------~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~d----G~l~i~gR~~d  559 (672)
                      .+       .+...+.|+.+||.++..+   |.|                  -|++||+.++..-    .++.|+||.++
T Consensus       375 ~~~~~~~~v~l~eve~G~~YelviTt~~---GL~------------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~  433 (581)
T 4epl_A          375 TGEGEEKPVGLTQVKIGEEYEVVITNYA---GLY------------------RYRLGDVVKVIGFYNNTPQLKFICRRNL  433 (581)
T ss_dssp             -----CCCEEGGGCCTTCEEEEEEESTT---SCS------------------SEEEEEEEEEEEEETTEEEEEEEEETTC
T ss_pred             ccCCCCceeeHHHcCCCCeEEEEEeecc---cee------------------eEEcCCEEEEecccCCCcEEEEEeecCC
Confidence            21       1223578899999998653   322                  4999999998642    57999999999


Q ss_pred             eEecCCceeeccHHHHHHHhc------Cc--ccceEEEEecCCC--CeEEEEEEc
Q 005874          560 IVKLQHGEYVSLGKVEAALIV------SP--YVDNIMMHADPFH--SYCVALVVA  604 (672)
Q Consensus       560 ~ik~~~G~~v~p~~iE~~l~~------~~--~V~~~~V~g~~~~--~~~va~v~~  604 (672)
                      ++.+. |+++++.+||+++.+      ..  .|.|-.++.+...  .+-+.+...
T Consensus       434 ~l~~~-Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~hyv~~wE~  487 (581)
T 4epl_A          434 ILSIN-IDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYAIFWEI  487 (581)
T ss_dssp             CBCSS-SCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCEEEEEEEE
T ss_pred             eEEee-eeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCCcEEEEEee
Confidence            99985 999999999999953      22  3566666664322  344444553

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=92.68  E-value=1.4  Score=46.09  Aligned_cols=112  Identities=13%  Similarity=-0.014  Sum_probs=86.0

Q ss_pred             CCcc--EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCC--HHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhc
Q 005874          101 LGEY--EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTR--AEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNE  176 (672)
Q Consensus       101 ~~~~--~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns--~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~  176 (672)
                      +|..  ..+|.+.+...+..++..+...|+.+++++..+++-+  ...+...++++..|++++++... .++.+...+++
T Consensus       104 TG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~  182 (443)
T 2y4o_A          104 TGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRD  182 (443)
T ss_dssp             SSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHH
T ss_pred             CCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHH
Confidence            4543  4679999988888888888788999999999998853  44455678888999999887664 78899999999


Q ss_pred             ccceEEEECccchHHHHhhhc------CCCCccEEEEecCCCc
Q 005874          177 TEVTTVICGSKELKKLVDLSG------QLDTVKHVICMDANIP  213 (672)
Q Consensus       177 ~~~~~vi~~~~~~~~l~~~~~------~~~~l~~ii~~~~~~~  213 (672)
                      .+++++++.+..+..+.+...      ..+.++.+++..+..+
T Consensus       183 ~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~  225 (443)
T 2y4o_A          183 FEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWT  225 (443)
T ss_dssp             HCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCC
T ss_pred             hCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCC
Confidence            999999999987766655321      1357777777665543

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=91.97  E-value=1.7  Score=45.39  Aligned_cols=109  Identities=11%  Similarity=0.015  Sum_probs=84.7

Q ss_pred             cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCC--CHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceE
Q 005874          104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADT--RAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTT  181 (672)
Q Consensus       104 ~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~n--s~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~  181 (672)
                      ...+|.+.+...+..++..+...|+.++|++..+++-  ....+...++++..|++++++... .++.+...+++.++++
T Consensus       107 ~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~  185 (437)
T 2y27_A          107 VVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGG-QTEKQVQLIQDFRPDI  185 (437)
T ss_dssp             EEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCSC-CHHHHHHHHHHHCCSE
T ss_pred             EEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHhCCCE
Confidence            3568999998888888888878899999999999885  344455678889999999877654 7889999999999999


Q ss_pred             EEECccchHHHHhhhc--C----CCCccEEEEecCCCc
Q 005874          182 VICGSKELKKLVDLSG--Q----LDTVKHVICMDANIP  213 (672)
Q Consensus       182 vi~~~~~~~~l~~~~~--~----~~~l~~ii~~~~~~~  213 (672)
                      +++.+..+..+.+...  .    .+.++.+++..+..+
T Consensus       186 l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~  223 (437)
T 2y27_A          186 IMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWT  223 (437)
T ss_dssp             EEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCC
T ss_pred             EEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCC
Confidence            9999988776655421  1    356777777665543

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=91.61  E-value=1.5  Score=45.80  Aligned_cols=109  Identities=11%  Similarity=-0.058  Sum_probs=86.0

Q ss_pred             cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCC--CHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceE
Q 005874          104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADT--RAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTT  181 (672)
Q Consensus       104 ~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~n--s~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~  181 (672)
                      ...+|.+.+...+..++..+...|+.+++++..+++-  ....+..+++++..|+++++.++. .++.+...+++.++++
T Consensus       103 ~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~  181 (436)
T 3qov_A          103 VIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTA  181 (436)
T ss_dssp             EEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCE
T ss_pred             EEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCE
Confidence            3568999999989888888888899999999999874  345556678889999998887654 6788999999999999


Q ss_pred             EEECccchHHHHhhhc------CCCCccEEEEecCCCc
Q 005874          182 VICGSKELKKLVDLSG------QLDTVKHVICMDANIP  213 (672)
Q Consensus       182 vi~~~~~~~~l~~~~~------~~~~l~~ii~~~~~~~  213 (672)
                      ++..+..+..+.+...      .++.++.+++..+..+
T Consensus       182 ~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~  219 (436)
T 3qov_A          182 LHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHT  219 (436)
T ss_dssp             EECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCC
T ss_pred             EEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCC
Confidence            9999987776655421      1457888887665543

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=81.23  E-value=24  Score=37.13  Aligned_cols=103  Identities=11%  Similarity=0.094  Sum_probs=76.5

Q ss_pred             EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCC-HHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEE
Q 005874          105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTR-AEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVI  183 (672)
Q Consensus       105 ~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns-~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi  183 (672)
                      ..+|.+.+...+..+..   ..++.+++++..++|-. .--+..+++++..|++++..+. ..++.+...+++.+++.++
T Consensus       181 v~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~  256 (501)
T 3ipl_A          181 VPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDK-FNAEQILTMIKNERITHIS  256 (501)
T ss_dssp             EEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS-CCHHHHHHHHHHSCCCEEE
T ss_pred             EEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCCC-CCHHHHHHHHHHcCCcEEE
Confidence            46798888777666543   34889999999988865 3333446778889999887764 6789999999999999999


Q ss_pred             ECccchHHHHhhhcC-CCCccEEEEecCC
Q 005874          184 CGSKELKKLVDLSGQ-LDTVKHVICMDAN  211 (672)
Q Consensus       184 ~~~~~~~~l~~~~~~-~~~l~~ii~~~~~  211 (672)
                      +....+..+.+.... ...++.+++..+.
T Consensus       257 ~~P~~~~~l~~~~~~~~~~lr~i~~gG~~  285 (501)
T 3ipl_A          257 LVPQTLNWLMQQGLHEPYNLQKILLGGAK  285 (501)
T ss_dssp             ECHHHHHHHHHHTCCSCTTCCEEEECSSC
T ss_pred             chHHHHHHHHhcCCCCcCcccEEEEeCCC
Confidence            999888777665422 2267777665544

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=80.93  E-value=14  Score=39.73  Aligned_cols=107  Identities=15%  Similarity=0.062  Sum_probs=77.7

Q ss_pred             cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH--HHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceE
Q 005874          104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAE--WFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTT  181 (672)
Q Consensus       104 ~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~ns~e--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~  181 (672)
                      -..+|.+.+...+......+...++.+++++..++|-+..  +...+++++ .|++.+.++ ...++.+...+++.+++.
T Consensus       209 gv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~  286 (548)
T 2d1s_A          209 GVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTS  286 (548)
T ss_dssp             CEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEE
T ss_pred             EEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcE
Confidence            3578999887776665544333588899999988886533  333456777 999988775 467899999999999999


Q ss_pred             EEECccchHHHHhhh----cCCCCccEEEEecCCC
Q 005874          182 VICGSKELKKLVDLS----GQLDTVKHVICMDANI  212 (672)
Q Consensus       182 vi~~~~~~~~l~~~~----~~~~~l~~ii~~~~~~  212 (672)
                      ++..+..+..+.+..    ..++.++.+++..+..
T Consensus       287 ~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l  321 (548)
T 2d1s_A          287 VILVPTLFAILNKSELLNKYDLSNLVEIASGGAPL  321 (548)
T ss_dssp             EEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCC
T ss_pred             EEecHHHHHHHHhCcccccccccceeEEEEcCccC
Confidence            999998877776532    2356777777755543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	672
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	4e-71
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	2e-67
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	2e-58
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	4e-29
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	2e-23
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	9e-24
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	3e-19
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	2e-22
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	9e-21
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	4e-21
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	1e-19

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  241 bits (615), Expect = 4e-71
 Identities = 107/603 (17%), Positives = 194/603 (32%), Gaps = 101/603 (16%)

Query: 96  FEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRN 155
           +E     + + ++Y +    +C FA+ L  LG KK + VAI+     E  VA+  C R  
Sbjct: 93  WEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 152

Query: 156 VTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDL-----------SGQLDTVKH 204
                I+     EA+   + ++    VI   + ++    +           +  + +V+H
Sbjct: 153 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEH 212

Query: 205 VICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGL 264
           VI +     S +   E    W            +   ++A+     D   I+YTSGSTG 
Sbjct: 213 VIVLKR-TGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAE-----DPLFILYTSGSTGK 266

Query: 265 PKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGT 324
           PKGV+ T G  L   +     V D    D+Y     +  V           +   +  G 
Sbjct: 267 PKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYL-----LYGPLACGA 321

Query: 325 PLTLTDTSSKIKKGTQGDASV--LRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDL 382
              + +         +    V   +  ++ + P  +  +     K ++          D 
Sbjct: 322 TTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEG--------TDR 373

Query: 383 AYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINI 442
           +                                      +R + S G P++ +   +   
Sbjct: 374 S-------------------------------------SLRILGSVGEPINPEAWEWYWK 396

Query: 443 CLG---APIGQGYGLTETCAGGTFSEVDDSSV--GRVGAPLPCSFIKLIDWPEGGYLTSD 497
            +G    P+   +  TET             +  G    P       L+D  EG      
Sbjct: 397 KIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEG------ 449

Query: 498 SPMP---RGEIVIAG--PNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLE 552
            P      G +VI    P      F + E+ ++ Y    K    +++GD  +   DG   
Sbjct: 450 HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKN--MYFSGDGARRDEDGYYW 507

Query: 553 IIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDN---IMMHADPFHSYCVALVVASQPAV 609
           I  R  D++ +  G  +   ++E+AL+  P +     + +          A V  +    
Sbjct: 508 ITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEE 566

Query: 610 EEWAAKQGIVGK-NARLDKFEIPAKIKLL-SYPWTSEAGLVTAALKIKREAIRKAFADDL 667
                   +       +     P  +    S P        T + KI R  +RK  A D 
Sbjct: 567 PSPELYAEVRNWVRKEIGPLATPDVLHWTDSLP-------KTRSGKIMRRILRKIAAGDT 619

Query: 668 ARL 670
           + L
Sbjct: 620 SNL 622

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  228 bits (581), Expect = 2e-67
 Identities = 129/625 (20%), Positives = 216/625 (34%), Gaps = 119/625 (19%)

Query: 59  TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
            L +  E++    G K ++                      H GE    TY + ++    
Sbjct: 12  NLWDFLERAAALFGRKEVVSRL-------------------HTGEVHRTTYAEVYQRARR 52

Query: 119 FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETE 178
              GL  LG    +RVA           A          + T    L  + + Y LN  E
Sbjct: 53  LMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAE 112

Query: 179 VTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGR 238
              ++     L  +  + G+L TV+H + MD   P    + E++                
Sbjct: 113 DKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGE------------- 159

Query: 239 ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLA-TVSAVMTIVPDLGSKDVYLA 297
               D           + YT+G+TGLPKGV+ +H  ++  +++A +     L  KDV L 
Sbjct: 160 --EADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLP 217

Query: 298 YLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAI 357
            +P+ HV           VG+      P     +  ++  G          T  A VP +
Sbjct: 218 VVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGE-------GVTFTAGVPTV 270

Query: 358 LDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAI 417
                                                             L  + +    
Sbjct: 271 -----------------------------------------------WLALADYLESTGH 283

Query: 418 LGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDD--------- 468
               +R ++ GG+             +G  + QGYGLTET      + V           
Sbjct: 284 RLKTLRRLVVGGSAAPRSLIARFE-RMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEE 342

Query: 469 --SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEV 526
             +   + G P+P   +++ D  EG  +  D     GE+ + GP +T GY+ NEE T+  
Sbjct: 343 KLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKAL-GEVQLKGPWITGGYYGNEEATRSA 400

Query: 527 YKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDN 586
              D     +F TGD+     +G +EI DR KD++K   GE++S   +E AL+  P V  
Sbjct: 401 LTPD----GFFRTGDIAVWDEEGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKE 455

Query: 587 IMMHADP---FHSYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTS 643
             + A P   +    +A+VV            + ++   A   K+++P            
Sbjct: 456 AAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLL--KAGFAKWQLPDAYVFA------ 507

Query: 644 EAGLVTAALKIKREAIRKAFADDLA 668
           E    T+A K  + A+R+ + +   
Sbjct: 508 EEIPRTSAGKFLKRALREQYKNYYG 532

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  206 bits (524), Expect = 2e-58
 Identities = 118/607 (19%), Positives = 204/607 (33%), Gaps = 99/607 (16%)

Query: 96  FEKLHLGEYEWLTYGQAFETICNFASGLA-QLGHKKEERVAIFADTRAEWFVALQGCFRR 154
           FE    G+   +TY +  E +C  A  L   +G +K + VA++     E  + L    R 
Sbjct: 80  FEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRI 139

Query: 155 NVTVVTIYASLGEEALCYSLNETEVTTVICGSK--------ELKKLV-DLSGQLDTVKHV 205
                 ++A     +L   +N+ +   VI   +        E K++V D   +   V+HV
Sbjct: 140 GAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHV 199

Query: 206 ICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLP 265
           +        +V+          T     +      PVD++     D   ++YTSGSTG P
Sbjct: 200 LVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSE-----DPLFLLYTSGSTGAP 254

Query: 266 KGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTP 325
           KGV  +    L      M    D   +DV+     +  +           V   + YG  
Sbjct: 255 KGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYV-----VYGPLLYGCA 309

Query: 326 LTLTDTSSKIKKGTQGDASV--LRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLA 383
             + + +      ++    +   + T     P  L                         
Sbjct: 310 TLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTAL------------------------- 344

Query: 384 YARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC 443
             R L     S+     L+ L                  R + S G P++A+   + +  
Sbjct: 345 --RLLKRAGDSYIENHSLKSL------------------RCLGSVGEPIAAEVWEWYSEK 384

Query: 444 LG---APIGQGYGLTETCAGGTFSEVDDSS---VGRVGAPLPCSFIKLIDWPEGGYLTSD 497
           +G    PI   Y  TE+ +          +    G    P       ++D   G  L  +
Sbjct: 385 IGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEEL--N 442

Query: 498 SPMPRGEIVIAG--PNVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIID 555
           +    G + +    P+     +KN ++  + Y     G  +++TGD      DG + I+ 
Sbjct: 443 TSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPG--YYFTGDGAAKDKDGYIWILG 500

Query: 556 RKKDIVKLQHGEYVSLGKVEAALIVSPYVDN---IMMHADPFHSYCVALVVASQPAVEEW 612
           R  D+V +  G  +S  ++EAA+I  P V     +  + D       A VV    +    
Sbjct: 501 RVDDVVNVS-GHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWST 559

Query: 613 AAKQGIVGK--------NARLDKFEIPAKIKLL-SYPWTSEAGLVTAALKIKREAIRKAF 663
           A    +              +  F  P  I L+   P        T + KI R  +RK  
Sbjct: 560 ATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLP-------KTRSGKIMRRILRKIL 612

Query: 664 ADDLARL 670
           A +  +L
Sbjct: 613 AGESDQL 619

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  120 bits (300), Expect = 4e-29
 Identities = 61/255 (23%), Positives = 100/255 (39%), Gaps = 33/255 (12%)

Query: 421 RIRFILSGGAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLP 479
            +  I SGGAPLS +    +      P I QGYGLTET +    +   D   G VG  +P
Sbjct: 305 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVP 364

Query: 480 CSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYT 539
               K++D   G  L  +     GE+ + GP +  GY  N E T  +   D     W ++
Sbjct: 365 FFEAKVVDLDTGKTLGVNQR---GELCVRGPMIMSGYVNNPEATNALIDKD----GWLHS 417

Query: 540 GDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHA---DPFHS 596
           GD+     D    I+DR K ++K   G  V+  ++E+ L+  P + +  +     D    
Sbjct: 418 GDIAYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGE 476

Query: 597 YCVALVV------ASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLL-SYPWTSEAGLVT 649
              A+VV       ++  + ++ A Q            ++   +  +   P         
Sbjct: 477 LPAAVVVLEHGKTMTEKEIVDYVASQV-------TTAKKLRGGVVFVDEVP-------KG 522

Query: 650 AALKIKREAIRKAFA 664
              K+    IR+   
Sbjct: 523 LTGKLDARKIREILI 537

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  102 bits (255), Expect = 2e-23
 Identities = 50/252 (19%), Positives = 91/252 (36%), Gaps = 24/252 (9%)

Query: 59  TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
           T  E   ++ K +      GT        EV                 +TY + FE    
Sbjct: 18  TAGEQLHKAMKRYALVP--GTIAFTDAHIEVN----------------ITYAEYFEMSVR 59

Query: 119 FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETE 178
            A  + + G     R+ + ++   ++F+ + G     V V        E  L  S+N ++
Sbjct: 60  LAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQ 119

Query: 179 VTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGR 238
            T V    K L+K++++  +L  ++ +I MD+              +   +         
Sbjct: 120 PTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQ----GFQSMYTFVTSHLPPGFNE 175

Query: 239 ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP--DLGSKDVYL 296
            + V   +     +A+IM +SGSTGLPKGV + H       S     +    +      L
Sbjct: 176 YDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAIL 235

Query: 297 AYLPLAHVLELV 308
           + +P  H   + 
Sbjct: 236 SVVPFHHGFGMF 247

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  103 bits (256), Expect = 9e-24
 Identities = 54/245 (22%), Positives = 94/245 (38%), Gaps = 21/245 (8%)

Query: 422 IRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGR-VGAPLPC 480
           I+ +++ G+  S                  YG TET    T       ++G  V    P 
Sbjct: 279 IQTLITAGSATSPSLVNKW--KEKVTYINAYGPTETTICATTWVATKETIGHSVPIGAPI 336

Query: 481 SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVD--DKGMRWFY 538
              ++    E   L S      GE+ I G  +  GY+K  E T + +  +    G + + 
Sbjct: 337 QNTQIYIVDENLQLKSVGEA--GELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYK 394

Query: 539 TGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDN--IMMHADPFHS 596
           TGD  +  +DG +E + R  + VK+  G  V L +VE+ L+   Y+    + +H D    
Sbjct: 395 TGDQARWLSDGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQ 453

Query: 597 YCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLL-SYPWTSEAGLVTAALKIK 655
             +     S+  +     +Q     +  L  + IP+    L   P       +T+  KI 
Sbjct: 454 PYLCAYFVSEKHIPLEQLRQFS---SEELPTYMIPSYFIQLDKMP-------LTSNGKID 503

Query: 656 REAIR 660
           R+ + 
Sbjct: 504 RKQLP 508

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 89.2 bits (220), Expect = 3e-19
 Identities = 34/217 (15%), Positives = 69/217 (31%), Gaps = 49/217 (22%)

Query: 58  STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETIC 117
            T+ +LFE+   +  +               +                 LTY +      
Sbjct: 23  KTIHQLFEEQVSKRPNN------------VAIVCENEQ-----------LTYHELNVKAN 59

Query: 118 NFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNET 177
             A    + G  K+  V I  +   + F+ +    +     V I     +E + Y L+++
Sbjct: 60  QLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDS 119

Query: 178 EVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILG 237
           +   ++     +  + ++                              KI    ++ +  
Sbjct: 120 QARMLLTQKHLVHLIHNIQFNGQVEIFEEDT----------------IKIREGTNLHV-- 161

Query: 238 RENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGN 274
              P  +      D+A ++YTSG+TG PKG M+ H  
Sbjct: 162 ---PSKST-----DLAYVIYTSGTTGNPKGTMLEHKG 190

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 99.3 bits (246), Expect = 2e-22
 Identities = 52/253 (20%), Positives = 102/253 (40%), Gaps = 22/253 (8%)

Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTE-TCAGGTFSEVDDSSVGRVGAPLP 479
            ++ +  GGA  SA+  R +    G  + Q +G+ E         + ++  V   G P+ 
Sbjct: 299 SLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMS 358

Query: 480 CSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVDDKGMRWFYT 539
                 +       +    P   G ++  GP    GY+K EE     +        ++ T
Sbjct: 359 PYDESRVWDDHDRDVK---PGETGHLLTRGPYTIRGYYKAEEHNAASFT----EDGFYRT 411

Query: 540 GDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDN---IMMHADPFHS 596
           GD+ ++  DG + +  R KD +    GE V+  +VE  L+  P V +   + M       
Sbjct: 412 GDIVRLTRDGYIVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGE 470

Query: 597 YCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLL-SYPWTSEAGLVTAALKIK 655
                ++    A +    K  +  +   L  ++IP +++ + S+P        T   K+ 
Sbjct: 471 RSCVFIIPRDEAPKAAELKAFLRERG--LAAYKIPDRVEFVESFP-------QTGVGKVS 521

Query: 656 REAIRKAFADDLA 668
           ++A+R+A ++ L 
Sbjct: 522 KKALREAISEKLL 534

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 93.9 bits (232), Expect = 9e-21
 Identities = 40/224 (17%), Positives = 71/224 (31%), Gaps = 36/224 (16%)

Query: 54  WEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAF 113
           W G  T  +L      ++GD+              +                  +Y +  
Sbjct: 22  WAG-ETFGDLLRDRAAKYGDR------------IAITCGNTH-----------WSYRELD 57

Query: 114 ETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYS 173
                 A+G  +LG ++++RV +      E+F  +   FR     V    S     + Y 
Sbjct: 58  TRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYF 117

Query: 174 LNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADV 233
               E    I          D     D       + + +P+  + +      +     D+
Sbjct: 118 CEFAEAAAYII--------PDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDL 169

Query: 234 QILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLA 277
                  PV      S+DVA +  + GSTGL K +  TH + + 
Sbjct: 170 H----TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIY 209

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 95.1 bits (235), Expect = 4e-21
 Identities = 49/278 (17%), Positives = 88/278 (31%), Gaps = 30/278 (10%)

Query: 395 WFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGL 454
            F        L      +     L   +R +   GA +       ++  L       YG 
Sbjct: 248 LFATPTHLDALAAAAAHAGSSLKLD-SLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGT 306

Query: 455 TETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGE----IVIAGP 510
           TE        +    +    G       +++           D  +  GE    IV A  
Sbjct: 307 TEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGG-------GVDEIVANGEEGELIVAASD 359

Query: 511 NVTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVS 570
           +  VGY    + T E  +       W+ T DV     +G + I+ R  D++    GE + 
Sbjct: 360 SAFVGYLNQPQATAEKLQ-----DGWYRTSDVAVWTPEGTVRILGRVDDMIISG-GENIH 413

Query: 571 LGKVEAALIVSPYVDNIMMHADP---FHSYCVALVVASQPAVEEWAAKQGIVGKNARLDK 627
             ++E  L  +P V  +++       +     A VV          A      +++ L  
Sbjct: 414 PSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFC-RSSELAD 472

Query: 628 FEIPAKIKLL-SYPWTSEAGLVTAALKIKREAIRKAFA 664
           F+ P +  +L   P         A  K+ R  + +  +
Sbjct: 473 FKRPKRYFILDQLP-------KNALNKVLRRQLVQQVS 503

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 90.5 bits (223), Expect = 1e-19
 Identities = 41/228 (17%), Positives = 75/228 (32%), Gaps = 41/228 (17%)

Query: 57  ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETI 116
           + T+ E+  ++     D   L           V   G             LT+ +    +
Sbjct: 1   MQTVNEMLRRAATRAPDHCAL----------AVPARGLR-----------LTHAELRARV 39

Query: 117 CNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNE 176
              A+ L   G + ++RVA+ A   A+  +A+    R       +   L    L   +  
Sbjct: 40  EAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKR 99

Query: 177 TEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQIL 236
            E+T  +       ++ D   Q  +   +I +   +                   D +  
Sbjct: 100 GEMTAAVIAVGR--QVADAIFQSGSGARIIFLGDLV------------------RDGEPY 139

Query: 237 GRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT 284
               P++      A  A I YTSG+TGLPK  ++      + V  + T
Sbjct: 140 SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST 187

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	672
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=5.7e-73  Score=635.84  Aligned_cols=514  Identities=20%  Similarity=0.246  Sum_probs=412.7

Q ss_pred             HHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcC
Q 005874           60 LAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFAD  139 (672)
Q Consensus        60 l~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~~~  139 (672)
                      ...+++++++.+||++|+++...         +        .++.+++||+||.++++++|++|+++|+++||+|+++++
T Consensus        74 ~~n~ldrh~~~~~d~~Ali~~~~---------~--------~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~  136 (643)
T d1pg4a_          74 AANCLDRHLQENGDRTAIIWEGD---------D--------TSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMP  136 (643)
T ss_dssp             HHHHTGGGHHHHTTSEEEEEECS---------S--------TTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             HHHHHHHHHHhCCCCEEEEEEec---------C--------CCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecc
Confidence            45677788899999999997420         1        235678999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccch---------HHHHhhh--cCCCCccEEEEe
Q 005874          140 TRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL---------KKLVDLS--GQLDTVKHVICM  208 (672)
Q Consensus       140 ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~l~~~~--~~~~~l~~ii~~  208 (672)
                      |++++++++|||+++|++++|+++.++++++.+++++++++++|+++...         ..+....  ...+.+.+++..
T Consensus       137 n~~e~iv~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~  216 (643)
T d1pg4a_         137 MVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL  216 (643)
T ss_dssp             SSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEE
T ss_pred             cchHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEe
Confidence            99999999999999999999999999999999999999999999976421         2222222  245677788877


Q ss_pred             cCCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHH-HHhhcC
Q 005874          209 DANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA-VMTIVP  287 (672)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~  287 (672)
                      .........     .......+.+..... .....+....+|++++|+|||||||.||||++||++++..... +...+ 
T Consensus       217 ~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~-  289 (643)
T d1pg4a_         217 KRTGSDIDW-----QEGRDLWWRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-  289 (643)
T ss_dssp             CSSCCCCCC-----CBTTEEEHHHHHTTS-CSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-
T ss_pred             ccCCccccc-----ccccchhhhhhhccc-CcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhh-
Confidence            654322100     011223344444332 2333445567899999999999999999999999997765444 44445 


Q ss_pred             CCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeC-------CcccccCchhhhhcccccccccccceeeecchHHHH
Q 005874          288 DLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG-------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILD  359 (672)
Q Consensus       288 ~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~-------~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~  359 (672)
                      .++++|++++++|++|++++.. ++.+|+.|+++++.       ++..+++.           ++++++|+++++|+++.
T Consensus       290 ~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~l~  358 (643)
T d1pg4a_         290 DYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQV-----------VDKHQVNILYTAPTAIR  358 (643)
T ss_dssp             TCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHH-----------HHHHTCSEEEECHHHHH
T ss_pred             CCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHH-----------HHHHCCcEEEehHHHHH
Confidence            8999999999999999999876 56789999999982       33444444           99999999999999999


Q ss_pred             HHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHH
Q 005874          360 RVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRF  439 (672)
Q Consensus       360 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~  439 (672)
                      .|++......                                             +....++||.+++||+++++++.++
T Consensus       359 ~l~~~~~~~~---------------------------------------------~~~dl~sLr~i~~~G~pl~~~~~~~  393 (643)
T d1pg4a_         359 ALMAEGDKAI---------------------------------------------EGTDRSSLRILGSVGEPINPEAWEW  393 (643)
T ss_dssp             HHHTTGGGGT---------------------------------------------TTCCCTTCCEEEEESSCCCHHHHHH
T ss_pred             HHHhCcchhc---------------------------------------------cccCCCceEEEEEEeCCCCHHHHHH
Confidence            8876422111                                             1112358999999999999999999


Q ss_pred             HHHHhC---CceecccCcccccccccccCCC--CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEcc--Ccc
Q 005874          440 INICLG---APIGQGYGLTETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAG--PNV  512 (672)
Q Consensus       440 ~~~~~~---~~v~~~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g--~~v  512 (672)
                      +.+.++   +++++.||+||+++.++.....  +.+.+++|.|+++++++|+| +++..+   +.++.|||+|+|  |++
T Consensus       394 ~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~~---~~g~~Gel~v~~~~p~~  469 (643)
T d1pg4a_         394 YWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQ---EGATEGNLVITDSWPGQ  469 (643)
T ss_dssp             HHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBC---CSSEEEEEEECSCCTTC
T ss_pred             HHHHhCCCCceEEEeechhhccceEEecCCCccCCCCCccccccCCCEEEEEC-CCCCCC---CCCceEEEEEecCCCcc
Confidence            999874   7799999999998776654433  34568999999999999999 777665   478899999999  578


Q ss_pred             cccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEec
Q 005874          513 TVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHAD  592 (672)
Q Consensus       513 ~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~  592 (672)
                      +.||+++++.+.+.+...  .+|||+|||+|++|+||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|+|.
T Consensus       470 ~~~~~~~~~~~~~~~~~~--~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~-~G~ri~p~eIE~~l~~~p~V~eaaVvg~  546 (643)
T d1pg4a_         470 ARTLFGDHERFEQTYFST--FKNMYFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGI  546 (643)
T ss_dssp             CCEETTCHHHHHHHHHSS--STTSEEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEE
T ss_pred             cccccCChhhchhhhccc--CCCeEEcCCEEEECCCceEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEE
Confidence            999999999888776422  5789999999999999999999999999997 5999999999999999999999999997


Q ss_pred             CCC---CeEEEEEEcChhHHHHH-HHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874          593 PFH---SYCVALVVASQPAVEEW-AAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD  666 (672)
Q Consensus       593 ~~~---~~~va~v~~~~~~~~~~-~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~  666 (672)
                      +++   +.++|||+++++...+. ........++++|+.|++|+.|+++++.|      +|++||++|++|++++..+
T Consensus       547 ~d~~~ge~~~a~Vv~~~~~~~~~~~~~~i~~~~~~~L~~~~vP~~i~~v~~lP------~T~sGKi~R~~Lr~~~~~~  618 (643)
T d1pg4a_         547 PHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLP------KTRSGKIMRRILRKIAAGD  618 (643)
T ss_dssp             EETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCC------BCTTSCBCHHHHHHHHHTC
T ss_pred             ECCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCcccCccEEEEECCCC------CCCCcCccHHHHHHHhcCC
Confidence            654   46999999887543211 11111266778999999999999999988      9999999999999998653

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=4.1e-73  Score=627.49  Aligned_cols=506  Identities=25%  Similarity=0.329  Sum_probs=389.9

Q ss_pred             ccCCCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCC
Q 005874           52 TSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKE  131 (672)
Q Consensus        52 ~~~~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g  131 (672)
                      .+.+...|++++|+++++++||++|+++.+                   .|+++++||+||.+++.++|++|.++|+++|
T Consensus         5 ~~~~~~~~l~~~l~~~a~~~pd~~av~~~~-------------------~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~g   65 (534)
T d1v25a_           5 TMMDEELNLWDFLERAAALFGRKEVVSRLH-------------------TGEVHRTTYAEVYQRARRLMGGLRALGVGVG   65 (534)
T ss_dssp             CBCCCCCCTHHHHHHHHHHSTTCEEEEECT-------------------TSCEEEEEHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred             ccCCCCCCHHHHHHHHHHHcCCCeEEEEec-------------------CCceEEEcHHHHHHHHHHHHHHHHHCCcCCC
Confidence            344556789999999999999999998742                   2356689999999999999999999999999


Q ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCC
Q 005874          132 ERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDAN  211 (672)
Q Consensus       132 ~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~  211 (672)
                      |+|+|+++|+++|++++|||+++|++++|+++.++.+++.++++.++++.++++......+.......+.++..+.....
T Consensus        66 d~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (534)
T d1v25a_          66 DRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEK  145 (534)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSC
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeecc
Confidence            99999999999999999999999999999999999999999999999999999999999888888888888888876655


Q ss_pred             CcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhc-CCCC
Q 005874          212 IPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV-PDLG  290 (672)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~  290 (672)
                      ......           ....    ......+.....++++++++|||||||.||||+++|.+++.......... ..+.
T Consensus       146 ~~~~~~-----------~~~~----~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~  210 (534)
T d1v25a_         146 APEGYL-----------AYEE----ALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALS  210 (534)
T ss_dssp             CCTTCE-----------EHHH----HCCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCC
T ss_pred             cccccc-----------cccc----cccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccc
Confidence            432210           0111    01112233456678999999999999999999999999987665544332 3678


Q ss_pred             CCcEEEEecChHhHHHHHHHHHHhHhCcEEeeC----CcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHH
Q 005874          291 SKDVYLAYLPLAHVLELVAENLIAGVGSAIGYG----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVR  366 (672)
Q Consensus       291 ~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~----~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~  366 (672)
                      .+|++++.+|++|.+++...+..+..|++.++.    ++..+...           ++++++|++.++|.++..+.+...
T Consensus       211 ~~d~~~~~~p~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~-----------~~~~~vt~~~~~p~~~~~~~~~~~  279 (534)
T d1v25a_         211 EKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVEL-----------FDGEGVTFTAGVPTVWLALADYLE  279 (534)
T ss_dssp             TTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHHHH
T ss_pred             cccccccccchhhhccccccceeeeecceeeeccccccccccchh-----------hhhccccccccCchhhhhhhhhhc
Confidence            899999999999999999988888888877773    33333333           889999999999999998877543


Q ss_pred             HhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCC
Q 005874          367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGA  446 (672)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~  446 (672)
                      ...                                               ...++||.+++||++++++..++++. ++.
T Consensus       280 ~~~-----------------------------------------------~~~~~lr~~~~gG~~~~~~~~~~~~~-~~~  311 (534)
T d1v25a_         280 STG-----------------------------------------------HRLKTLRRLVVGGSAAPRSLIARFER-MGV  311 (534)
T ss_dssp             HHT-----------------------------------------------CCCSSCCEEEECSSCCCHHHHHHHHH-TTC
T ss_pred             ccc-----------------------------------------------ccccceeEEEEecCCCCHHHHHHHHH-hCC
Confidence            322                                               22358999999999999999999886 489


Q ss_pred             ceecccCcccccccccccCCCCC-----------CCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCccccc
Q 005874          447 PIGQGYGLTETCAGGTFSEVDDS-----------SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVG  515 (672)
Q Consensus       447 ~v~~~YG~TE~~~~~~~~~~~~~-----------~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~g  515 (672)
                      +++++||+||++..++.......           ..+++|.|+|+++++|+| ++++.++ .+.++.|||+|+|++++.|
T Consensus       312 ~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~-~~~~~~Gel~v~g~~v~~g  389 (534)
T d1v25a_         312 EVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVP-KDGKALGEVQLKGPWITGG  389 (534)
T ss_dssp             EEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCC-SSSCCCEEEEEESTTSBSS
T ss_pred             eeeeeccccccccceeecccCccccccCccccccccccceeccCCcEEEEEC-CCCCCCC-CCCCeeEEEEEcCCcccce
Confidence            99999999999887765433221           126899999999999999 7777765 3457899999999999999


Q ss_pred             ccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC
Q 005874          516 YFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH  595 (672)
Q Consensus       516 Y~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~  595 (672)
                      ||++++.|...|.    .+|||+|||+|++++||.|+++||++|+||+ +|++|+|.+||++|.+||+|.+|+|++.+++
T Consensus       390 Y~~~~~~t~~~~~----~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~  464 (534)
T d1v25a_         390 YYGNEEATRSALT----PDGFFRTGDIAVWDEEGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHP  464 (534)
T ss_dssp             CBTCHHHHHTTBC----TTSCEEEEEEEEECTTCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECS
T ss_pred             ecCChhhhhhhcc----cCCCCccCceeEECCCccEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECC
Confidence            9999999999998    8999999999999999999999999999997 6999999999999999999999999997654


Q ss_pred             ---CeEEEEEEcChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHH
Q 005874          596 ---SYCVALVVASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFAD  665 (672)
Q Consensus       596 ---~~~va~v~~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~  665 (672)
                         +.++|+|+++.+........+  ..++++|+.|++|+.|+++++.|      +|++|||+|++||++|++
T Consensus       465 ~~~~~l~a~vv~~~~~~~~~~~~~--~~~~~~l~~~~~P~~i~~~~~lP------~t~~GKi~R~~lr~~~~~  529 (534)
T d1v25a_         465 KWQERPLAVVVPRGEKPTPEELNE--HLLKAGFAKWQLPDAYVFAEEIP------RTSAGKFLKRALREQYKN  529 (534)
T ss_dssp             SSSEEEEECC---------------------CCCTTTSCSBC--------------------CCTTHHHHSTT
T ss_pred             CCCeEEEEEEEeCCCCCCHHHHHH--HHHHhcCCcCCCccEEEEECCCC------CCCCccccHHHHHHHHHh
Confidence               358999988765533211111  34567899999999999999987      999999999999988865

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.3e-72  Score=631.97  Aligned_cols=524  Identities=20%  Similarity=0.216  Sum_probs=407.0

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHH-hcCCCCCCEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLA-QLGHKKEERVAI  136 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~-~~g~~~g~~V~i  136 (672)
                      +..+.+++++|+++||++|+++..           ..      .|+.+++||+||.++++++|++|+ ++|+++||+|+|
T Consensus        59 N~~~n~ldr~a~~~pd~~Ali~~~-----------~~------~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i  121 (640)
T d1ry2a_          59 NACYNCVDRHALKTPNKKAIIFEG-----------DE------PGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAV  121 (640)
T ss_dssp             CHHHHHTHHHHTTCTTSEEEEEEC-----------SS------TTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEE
T ss_pred             hHHHHHHHHHHhhCCCCEEEEEEe-----------cC------CCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            346888999999999999999742           11      345678999999999999999997 679999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccc---------hHHHHhhhcCCCCccEEEE
Q 005874          137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKE---------LKKLVDLSGQLDTVKHVIC  207 (672)
Q Consensus       137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~l~~~~~~~~~l~~ii~  207 (672)
                      +++|++++++++|||+++|++++|+++.++++++.++++++++++++++...         ...+.+.......+.....
T Consensus       122 ~~~n~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (640)
T d1ry2a_         122 YMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLV  201 (640)
T ss_dssp             CCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEE
T ss_pred             EeCCCHHHHHHHHHhccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeee
Confidence            9999999999999999999999999999999999999999999999998643         2334444455555665555


Q ss_pred             ecCCCcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcC
Q 005874          208 MDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP  287 (672)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~  287 (672)
                      ...........    .......+..... .........+..++++++|+|||||||.||||+++|++++...........
T Consensus       202 ~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~  276 (640)
T d1ry2a_         202 YRKTNNPSVAF----HAPRDLDWATEKK-KYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF  276 (640)
T ss_dssp             ECSSCCSSCCC----CSSSEEEHHHHHT-TSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS
T ss_pred             ecccccccccc----ccccccccccccc-ccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhc
Confidence            44332211000    0111222222222 222233445567789999999999999999999999998887655554333


Q ss_pred             CCCCCcEEEEecChHhHHHHHH-HHHHhHhCcEEeeC-------CcccccCchhhhhcccccccccccceeeecchHHHH
Q 005874          288 DLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG-------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILD  359 (672)
Q Consensus       288 ~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~~-------~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~  359 (672)
                      .++++|++++++|++|++++.. ++.+|..|+++++.       ++..+.+.           ++++++|++.++|.++.
T Consensus       277 ~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~  345 (640)
T d1ry2a_         277 DTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI-----------IDEHKVTQFYVAPTALR  345 (640)
T ss_dssp             CCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHH-----------HHHTTCSEEEECHHHHH
T ss_pred             CCCcccceeeccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHH-----------HHHhCccEEEcChHHHH
Confidence            8999999999999999999776 66789999988872       33344444           99999999999999998


Q ss_pred             HHHHHHHHhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHH
Q 005874          360 RVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRF  439 (672)
Q Consensus       360 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~  439 (672)
                      .|.+.......                                             ....++||.+++||+++++++.++
T Consensus       346 ~l~~~~~~~~~---------------------------------------------~~~l~sLr~v~~gG~~l~~~~~~~  380 (640)
T d1ry2a_         346 LLKRAGDSYIE---------------------------------------------NHSLKSLRCLGSVGEPIAAEVWEW  380 (640)
T ss_dssp             HHTTSCTTSSS---------------------------------------------SCCCTTCCEEEECSSCCCHHHHHH
T ss_pred             HHHhccccccc---------------------------------------------cCCCCceEEEEEecccCcHHHHHH
Confidence            87652211110                                             112358999999999999999999


Q ss_pred             HHHHhC---CceecccCcccccccccccCCC---CCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEcc--Cc
Q 005874          440 INICLG---APIGQGYGLTETCAGGTFSEVD---DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAG--PN  511 (672)
Q Consensus       440 ~~~~~~---~~v~~~YG~TE~~~~~~~~~~~---~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g--~~  511 (672)
                      +++.++   .+++++||+||++.........   ..+.+++|.|+++++++|+| ++++... .+.+..|||+++|  |+
T Consensus       381 ~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d-~~~~~~~-~~~~~~Gel~i~~~~p~  458 (640)
T d1ry2a_         381 YSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEEL-NTSHAEGVLAVKAAWPS  458 (640)
T ss_dssp             HHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCE-ECSSCEEEEEESSCCTT
T ss_pred             HHHhcCCCcceEEeeecccccccccccccCCCcCCCCCcccccccCCceEEEEe-CCCCccc-CCCCceEEEEEEecCCC
Confidence            999885   5689999999998766554333   33568999999999999999 5444332 2455679999998  68


Q ss_pred             ccccccCCchhhhhhcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEe
Q 005874          512 VTVGYFKNEEKTKEVYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHA  591 (672)
Q Consensus       512 v~~gY~~~~~~t~~~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g  591 (672)
                      ++.|||++++.|.+.|..+  .+|||+|||+|++|+||.|+|+||+||+||+ +|++|+|.+||++|.+||+|.+|+|+|
T Consensus       459 ~~~gy~~~~e~t~~~~~~~--~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg  535 (640)
T d1ry2a_         459 FARTIWKNHDRYLDTYLNP--YPGYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVG  535 (640)
T ss_dssp             SCCEETTCHHHHHHHHTSS--STTSEEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEEC
T ss_pred             cccccccCHHHHHhhhccC--CCCeEEcCCceeECCCCCEEEEEcCCCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEE
Confidence            9999999999999888522  5689999999999999999999999999996 699999999999999999999999999


Q ss_pred             cCCC---CeEEEEEEcChhHHHHHHH--------HcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHH
Q 005874          592 DPFH---SYCVALVVASQPAVEEWAA--------KQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIR  660 (672)
Q Consensus       592 ~~~~---~~~va~v~~~~~~~~~~~~--------~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~  660 (672)
                      .+++   +.++|+|+++++.......        +.....++++|++|++|+.|+++++.|      +|++|||+|++||
T Consensus       536 ~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP------~T~sGKi~R~~Lr  609 (640)
T d1ry2a_         536 FNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLP------KTRSGKIMRRILR  609 (640)
T ss_dssp             CCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCC------BCTTSCBCHHHHH
T ss_pred             EECCCCCeEEEEEEEEcCCCCccccchHHHHHHHHHHHHHHHhhCCCCCCceEEEEeCCCC------CCCCcCccHHHHH
Confidence            8765   4699999998875433211        111155678999999999999999987      9999999999999


Q ss_pred             HHHHHHHHhh
Q 005874          661 KAFADDLARL  670 (672)
Q Consensus       661 ~~~~~~i~~l  670 (672)
                      +++..+.+++
T Consensus       610 ~~~~~~~~~~  619 (640)
T d1ry2a_         610 KILAGESDQL  619 (640)
T ss_dssp             HSCC------
T ss_pred             HHHhCCcccc
Confidence            9987766554

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=6.3e-71  Score=611.00  Aligned_cols=507  Identities=21%  Similarity=0.265  Sum_probs=401.2

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF  137 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~  137 (672)
                      .|+.++|.+.+++|+++++.....          |+.        ..+++||+||.+++.++|.+|+++|+++||+|+|+
T Consensus        17 ~t~~~~l~~~~~~~~~~P~~~a~~----------d~~--------~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~   78 (541)
T d1lcia_          17 GTAGEQLHKAMKRYALVPGTIAFT----------DAH--------IEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVC   78 (541)
T ss_dssp             SCHHHHHHHHHHHHHTSTTCEEEE----------ETT--------TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred             CCHHHHHHHHHHhhCCCCCeEEEE----------eCC--------CCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEE
Confidence            689999999999995555433211          111        12379999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCccccc
Q 005874          138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS  217 (672)
Q Consensus       138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~  217 (672)
                      ++|++++++++|||+++|++++|+++.++.+++.++++.++++.+|++++..+.+.++...++..+.+++++......  
T Consensus        79 ~~ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  156 (541)
T d1lcia_          79 SENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQ--  156 (541)
T ss_dssp             CSSCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBT--
T ss_pred             eCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCCcccc--
Confidence            999999999999999999999999999999999999999999999999999999999989999999999887654322  


Q ss_pred             ccccCCCeEEEeHHHHHhccc------CCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhc--CCC
Q 005874          218 SVEQSGRWKITSFADVQILGR------ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV--PDL  289 (672)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~  289 (672)
                            .  ..++.+......      ....+.....++++++|+|||||||.||||++||++++.........+  ..+
T Consensus       157 ------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~  228 (541)
T d1lcia_         157 ------G--FQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQI  228 (541)
T ss_dssp             ------T--BEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCC
T ss_pred             ------c--cchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccc
Confidence                  1  122233222211      112223445678999999999999999999999999998777766543  357


Q ss_pred             CCCcEEEEecChHhHHHHHHHHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHH
Q 005874          290 GSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVR  366 (672)
Q Consensus       290 ~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~  366 (672)
                      .+++++++++|++|.+++...+..+..|+.++.   .++......           +..+++|.++.+|.++..+.....
T Consensus       229 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~t~~~~~p~~~~~~~~~~~  297 (541)
T d1lcia_         229 IPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRS-----------LQDYKIQSALLVPTLFSFFAKSTL  297 (541)
T ss_dssp             CTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHTTCSEEECCHHHHHHHHHCSC
T ss_pred             cccccccccccccccccccccccccccccccccccccccchhHHH-----------HhhhhccccccCcccccccccccc
Confidence            789999999999999999988888888888877   333333333           788999999999999988876322


Q ss_pred             HhhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCC
Q 005874          367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGA  446 (672)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~  446 (672)
                      ...                                               ...+++|.+++||+++++...+.+.+.++.
T Consensus       298 ~~~-----------------------------------------------~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~  330 (541)
T d1lcia_         298 IDK-----------------------------------------------YDLSNLHEIASGGAPLSKEVGEAVAKRFHL  330 (541)
T ss_dssp             GGG-----------------------------------------------SCCTTCCEEECTTCCCCHHHHHHHHHHTTC
T ss_pred             ccc-----------------------------------------------cccccceEEEecccccccccccccccccCC
Confidence            111                                               122489999999999999999999988864


Q ss_pred             -ceecccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhh
Q 005874          447 -PIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKE  525 (672)
Q Consensus       447 -~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~  525 (672)
                       .++++||+||+++.++.........+++|.|+|+++++|+|.+++..+   +.|+.|||+|+|++++.||+++++.+..
T Consensus       331 ~~~~~~YG~TE~~~~~~~~~~~~~~~~svG~p~~~~~~~i~d~d~~~~~---~~g~~Gel~v~g~~~~~gY~~~~~~~~~  407 (541)
T d1lcia_         331 PGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTL---GVNQRGELCVRGPMIMSGYVNNPEATNA  407 (541)
T ss_dssp             SCCBCEECCGGGSSCSEECCCC---CCCCBEECTTCEEEEECTTTCCBC---CTTCCEEEEEESTTSCSEETTBHHHHHH
T ss_pred             ceeeecCCccccCceEEecCcccCCCCccccccCCCEEEEEECCCCcCC---CCCCeEEEEEccCccCCeeCCChhhhhh
Confidence             688999999999988888777778899999999999999995555554   5788999999999999999999999998


Q ss_pred             hcccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEE
Q 005874          526 VYKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALV  602 (672)
Q Consensus       526 ~~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v  602 (672)
                      .+.    .+|||+|||+|++++||.++++||++|+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|
T Consensus       408 ~~~----~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v  482 (541)
T d1lcia_         408 LID----KDGWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVV  482 (541)
T ss_dssp             HBC----TTSCEEEEEEEEECTTCCEEEC-----CEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEE
T ss_pred             ccc----CCccccCCCeeEEcCCeEEEEeeeecCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEE
Confidence            887    8999999999999999999999999999998 6999999999999999999999999996544   3688999


Q ss_pred             EcChhHHHHHHHHcChhhhhcCCCCCc-ceeEEEEeecCCCCCCCccccccccChHHHHHHHHHH
Q 005874          603 VASQPAVEEWAAKQGIVGKNARLDKFE-IPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADD  666 (672)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~L~~~~-~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~  666 (672)
                      +++++...+....  ...++++|+++. +|+.|+++++.|      +|++|||+|++|++++.++
T Consensus       483 ~~~~~~~~~~~~l--~~~~~~~l~~~~~~p~~i~~v~~lP------~t~~GKi~r~~l~~~~~~~  539 (541)
T d1lcia_         483 VLEHGKTMTEKEI--VDYVASQVTTAKKLRGGVVFVDEVP------KGLTGKLDARKIREILIKA  539 (541)
T ss_dssp             EECTTCCCCHHHH--HHHHHHHSCGGGSCTTEEEEESSCC------C-----CCHHHHHHHHHHH
T ss_pred             EECCCCCCCHHHH--HHHHHHhCCccccCCcEEEEeCCCC------cCCCcCccHHHHHHHHHHh
Confidence            9876542221111  155667787765 789999999887      9999999999999998764

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=2.3e-68  Score=586.59  Aligned_cols=485  Identities=20%  Similarity=0.232  Sum_probs=396.6

Q ss_pred             ccCCCCCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCC
Q 005874           52 TSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKE  131 (672)
Q Consensus        52 ~~~~~~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g  131 (672)
                      .++|...||.++|+++|+++||++|+++            +++           .+||+||.++++++|.+|+++|+++|
T Consensus        17 ~~~~~~~tl~~l~~~~a~~~Pd~~Al~~------------~~~-----------~~Ty~eL~~~v~~lA~~L~~~Gv~~g   73 (514)
T d1amua_          17 AEYPRDKTIHQLFEEQVSKRPNNVAIVC------------ENE-----------QLTYHELNVKANQLARIFIEKGIGKD   73 (514)
T ss_dssp             CCCCTTCCHHHHHHHHHHHCTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred             CCCCCCCcHHHHHHHHHHhCCCCeEEEE------------CCe-----------eEcHHHHHHHHHHHHHHHHHcCcCCc
Confidence            3567889999999999999999999997            444           79999999999999999999999999


Q ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCC
Q 005874          132 ERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDAN  211 (672)
Q Consensus       132 ~~V~i~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~  211 (672)
                      |+|+++++|+.+|++++|||+++|++++|+++.++++++.++++.++++++|++....+.+......   . ....... 
T Consensus        74 d~Vai~~~n~~~~v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~---~-~~~~~~~-  148 (514)
T d1amua_          74 TLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFN---G-QVEIFEE-  148 (514)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCC---S-EEEECCC-
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhccc---c-ccccccc-
Confidence            9999999999999999999999999999999999999999999999999999998877655433211   1 1111111 


Q ss_pred             CcccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCC
Q 005874          212 IPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGS  291 (672)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~  291 (672)
                                           .............+..++++++|+|||||||.||+|++||.++..........+ .+..
T Consensus       149 ---------------------~~~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~  206 (514)
T d1amua_         149 ---------------------DTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-NVTE  206 (514)
T ss_dssp             ---------------------STTTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-CCCT
T ss_pred             ---------------------ccccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccc-cccc
Confidence                                 011111122233456788999999999999999999999999999999988888 9999


Q ss_pred             CcEEEEecChHhHHHHHHHHHHhHhCcEEeeCCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHHhhhh
Q 005874          292 KDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDA  371 (672)
Q Consensus       292 ~d~~l~~~pl~h~~~~~~~~~~l~~G~~i~~~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~  371 (672)
                      +|++++++|++|..++...+.++..|+++++..+....+.....     ..+....++.+..+|.......         
T Consensus       207 ~d~~l~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---------  272 (514)
T d1amua_         207 KDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFE-----QYINQKEITVITLPPTYVVHLD---------  272 (514)
T ss_dssp             TCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHH-----HHHHHTTCCEEEECHHHHTTSC---------
T ss_pred             cccccceeccccccccccccccccccccccccccccccchhhhh-----hhhhhhhcccccceeeeccccc---------
Confidence            99999999999999999999999999999984443333321111     1166777888888886543210         


Q ss_pred             cCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCceecc
Q 005874          372 KGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQG  451 (672)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~  451 (672)
                                                                  .....+++.+++||+++++++.+++..  ++.+++.
T Consensus       273 --------------------------------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~--~~~~~~~  306 (514)
T d1amua_         273 --------------------------------------------PERILSIQTLITAGSATSPSLVNKWKE--KVTYINA  306 (514)
T ss_dssp             --------------------------------------------TTTCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEE
T ss_pred             --------------------------------------------ccccccccEEEEecccCCHHHhhhhcc--ceeEEEe
Confidence                                                        112248999999999999999887766  6889999


Q ss_pred             cCcccccccccccCCCCCC---CCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhhcc
Q 005874          452 YGLTETCAGGTFSEVDDSS---VGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYK  528 (672)
Q Consensus       452 YG~TE~~~~~~~~~~~~~~---~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~~~  528 (672)
                      ||+||++..++........   .++.|.+.++.++.+.| +++..++   .|+.|||+|+||+++.||+++++.+.+.|.
T Consensus       307 yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~~~~---~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~  382 (514)
T d1amua_         307 YGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKS---VGEAGELCIGGEGLARGYWKRPELTSQKFV  382 (514)
T ss_dssp             ECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCC---TTCEEEEEEEETTCCCEETTCHHHHHHHEE
T ss_pred             eccccCceeeeeccccccccCcccccccceeeeeEeeec-ccceecC---CCCeeEEEEccCcccccccccccccceeeE
Confidence            9999999887665544433   36788899999999999 6666654   788999999999999999999999999886


Q ss_pred             cC--CCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEE
Q 005874          529 VD--DKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVV  603 (672)
Q Consensus       529 ~~--~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~  603 (672)
                      .+  .+++|||+|||+|++|+||.|++.||++|+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   .+++|+|+
T Consensus       383 ~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~-~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~  461 (514)
T d1amua_         383 DNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFV  461 (514)
T ss_dssp             ECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEE
T ss_pred             eccccCCCceEEECCEEEECCCCcEEEEecccCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEE
Confidence            44  357899999999999999999999999999997 6999999999999999999999999997654   36999999


Q ss_pred             cChhHHHHHHHHcChhhhhcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHH
Q 005874          604 ASQPAVEEWAAKQGIVGKNARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRK  661 (672)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~  661 (672)
                      ++++...+...    ..++++|++|++|..|+++++.|      +|++|||+|++|++
T Consensus       462 ~~~~~~~~~l~----~~~~~~l~~~~~p~~i~~v~~lP------~t~~GKi~R~~L~~  509 (514)
T d1amua_         462 SEKHIPLEQLR----QFSSEELPTYMIPSYFIQLDKMP------LTSNGKIDRKQLPE  509 (514)
T ss_dssp             ESSCCCHHHHH----HHHHHHSCGGGSCSEEEECSSCC------BCTTSSBCGGGSCC
T ss_pred             cCCCCCHHHHH----HHHHhhCCcccCceEEEEeCCCC------CCCCcChhHHhcCC
Confidence            98875443333    55678999999999999999987      99999999999876

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=6.3e-66  Score=569.98  Aligned_cols=494  Identities=22%  Similarity=0.292  Sum_probs=399.8

Q ss_pred             CCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 005874           58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF  137 (672)
Q Consensus        58 ~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i~  137 (672)
                      .|+.++|+++|+++||++|+.+            ++           +.+||+||.++++++|++|+++|+++||+|+|+
T Consensus        25 ~tl~~~l~~~a~~~pd~~Al~~------------~~-----------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~   81 (536)
T d1mdba_          25 ETFGDLLRDRAAKYGDRIAITC------------GN-----------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQ   81 (536)
T ss_dssp             CCHHHHHHHHHHHHTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEC
T ss_pred             CCHHHHHHHHHHHCCCCeEEEE------------CC-----------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEE
Confidence            6999999999999999999986            33           379999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchH-----HHHhhhcCCCCccEEEEecCCC
Q 005874          138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELK-----KLVDLSGQLDTVKHVICMDANI  212 (672)
Q Consensus       138 ~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~l~~~~~~~~~l~~ii~~~~~~  212 (672)
                      ++|+++|++++|||+++|++++|+++.++.+++.++++.++++.+++++....     .........+.+...+......
T Consensus        82 ~~n~~~~~v~~lA~~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (536)
T d1mdba_          82 LPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE  161 (536)
T ss_dssp             CCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT
T ss_pred             eCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccc
Confidence            99999999999999999999999999999999999999999999999865431     1122222333443333322221


Q ss_pred             cccccccccCCCeEEEeHHHHHhcccCCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCC
Q 005874          213 PSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSK  292 (672)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~  292 (672)
                      ..             .++++    ....+.......++|+++|+|||||||.||||++||+++.+.+......+ .+.++
T Consensus       162 ~~-------------~~~~~----~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-~~~~~  223 (536)
T d1mdba_         162 EF-------------LPLED----LHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-WLDHS  223 (536)
T ss_dssp             TS-------------EEGGG----CCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCTT
T ss_pred             cc-------------cchhh----cccCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccc-ccccc
Confidence            11             11111    11223334556789999999999999999999999999999999988888 89999


Q ss_pred             cEEEEecChHhHHHHHH-H-HHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHH
Q 005874          293 DVYLAYLPLAHVLELVA-E-NLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRK  367 (672)
Q Consensus       293 d~~l~~~pl~h~~~~~~-~-~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~  367 (672)
                      |++++.+|+.|.+++.. . ...+..|++++.   +++..+...           +++++++.+..+|..+..+......
T Consensus       224 d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~  292 (536)
T d1mdba_         224 TVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPL-----------IEREKVTITALVPPLAMVWMDAASS  292 (536)
T ss_dssp             CEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHH-----------HHHHTCSEEEECHHHHHHHHHHHHH
T ss_pred             cccccccccccccceeeccccccccccccccccCCCCHHHHHHH-----------Hhhhccccccccchhhhhhhhhccc
Confidence            99999999999999765 3 334555666666   444444444           8999999999999999887765433


Q ss_pred             hhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCc
Q 005874          368 KVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAP  447 (672)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~  447 (672)
                      ...                                               ..++++.+++||+++++...+++...++..
T Consensus       293 ~~~-----------------------------------------------~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~  325 (536)
T d1mdba_         293 RRD-----------------------------------------------DLSSLQVLQVGGAKFSAEAARRVKAVFGCT  325 (536)
T ss_dssp             CCC-----------------------------------------------CCTTCCEEEEESSCCCHHHHTTHHHHTCSE
T ss_pred             ccc-----------------------------------------------ccCcceeEEEeccccccccccchhhccCce
Confidence            222                                               124899999999999999999999999999


Q ss_pred             eecccCcccccccccccCC-CCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccCcccccccCCchhhhhh
Q 005874          448 IGQGYGLTETCAGGTFSEV-DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEV  526 (672)
Q Consensus       448 v~~~YG~TE~~~~~~~~~~-~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~~  526 (672)
                      ....||.+|.+........ .....+++|.|+++....+++.+++..+   +.++.|||+++|+.++.||+++++.+...
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~---~~~~~Gel~v~g~~~~~gY~~~~~~~~~~  402 (536)
T d1mdba_         326 LQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDV---KPGETGHLLTRGPYTIRGYYKAEEHNAAS  402 (536)
T ss_dssp             EEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBC---CTTCCEEEEEECTTSCSSCTTCHHHHHHH
T ss_pred             eeeccccccccccccccccccccccCCcccCCCCcceEEEEcCCCCee---cccccceeecCCCcccccccccccccccc
Confidence            9999999987655443322 2233478999987665555553666554   57899999999999999999999999999


Q ss_pred             cccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEE
Q 005874          527 YKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVV  603 (672)
Q Consensus       527 ~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~  603 (672)
                      +.    .+|||+|||+|++++||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++..++   +.++|+|+
T Consensus       403 ~~----~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~-~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~  477 (536)
T d1mdba_         403 FT----EDGFYRTGDIVRLTRDGYIVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFII  477 (536)
T ss_dssp             BC----TTSCEEEEEEEEECTTSCEEEEEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             cc----ccCccccCccccccCCCceecCCCcceEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEE
Confidence            98    8899999999999999999999999999997 6999999999999999999999999996544   35899999


Q ss_pred             cChhHHHH-HHHHcChhhhhc-CCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHHHHHHH
Q 005874          604 ASQPAVEE-WAAKQGIVGKNA-RLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAFADDLA  668 (672)
Q Consensus       604 ~~~~~~~~-~~~~~~~~~~~~-~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~~~~i~  668 (672)
                      +.++.... ...    ..+++ .|+.|++|+.|+++++.|      +|++|||+|++|+++|+++|.
T Consensus       478 ~~~~~~~~~~l~----~~l~~~~l~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~l~  534 (536)
T d1mdba_         478 PRDEAPKAAELK----AFLRERGLAAYKIPDRVEFVESFP------QTGVGKVSKKALREAISEKLL  534 (536)
T ss_dssp             ESSSCCCHHHHH----HHHHHTTCCGGGSCSEEEECSSCC------BCTTSCBCHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHH----HHHHhcCCCcCcCccEEEEECCCC------cCCCcCccHHHHHHHHHHHHh
Confidence            87653221 111    33444 599999999999999987      999999999999999998775

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=8.7e-63  Score=539.60  Aligned_cols=488  Identities=19%  Similarity=0.226  Sum_probs=389.5

Q ss_pred             CCCHHHHHHHHHHHcCCCCceEEeeccccccccccCCcccccccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 005874           57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI  136 (672)
Q Consensus        57 ~~tl~~~~~~~a~~~pd~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~a~~la~~L~~~g~~~g~~V~i  136 (672)
                      ++|++++|+++|+++||++|+.+.+          +|           +++||+||.++++++|.+|+++|+++||+|+|
T Consensus         1 ~~ti~~~l~~~a~~~pd~~al~~~~----------~~-----------~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i   59 (503)
T d3cw9a1           1 MQTVNEMLRRAATRAPDHCALAVPA----------RG-----------LRLTHAELRARVEAVAARLHADGLRPQQRVAV   59 (503)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEEGG----------GT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEECC----------CC-----------cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEE
Confidence            4799999999999999999998742          33           37999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHhcccceEEEECccchHHHHhhhcCCCCccEEEEecCCCcccc
Q 005874          137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV  216 (672)
Q Consensus       137 ~~~ns~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~  216 (672)
                      +++|+++|++++|||+++|++++|+++.++++++.+++++++++++|++..... ........... .            
T Consensus        60 ~~~n~~~~~~~~lA~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~-~~~~~~~~~~~-~------------  125 (503)
T d3cw9a1          60 VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV-ADAIFQSGSGA-R------------  125 (503)
T ss_dssp             ECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHH-HHHHHHTTCCC-E------------
T ss_pred             EeCCCHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHH-HHHHhhhcccc-c------------
Confidence            999999999999999999999999999999999999999999999999876432 22222222222 2            


Q ss_pred             cccccCCCeEEEeHHHHHhccc----CCCCCCCCCCCCCeEEEEeecCCCCCCceEEeehHHHHHHHHHHHhhc-CCCCC
Q 005874          217 SSVEQSGRWKITSFADVQILGR----ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV-PDLGS  291 (672)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~  291 (672)
                                ++.+.++.....    ..+.......++++++++|||||||.||+|+++|+++.+.+......+ .....
T Consensus       126 ----------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~  195 (503)
T d3cw9a1         126 ----------IIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGR  195 (503)
T ss_dssp             ----------EEEHHHHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSST
T ss_pred             ----------cccchhhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccc
Confidence                      222333322221    122333456788999999999999999999999999999988887765 24566


Q ss_pred             CcEEEEecChHhHHHHHH-HHHHhHhCcEEee---CCcccccCchhhhhcccccccccccceeeecchHHHHHHHHHHHH
Q 005874          292 KDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRK  367 (672)
Q Consensus       292 ~d~~l~~~pl~h~~~~~~-~~~~l~~G~~i~~---~~~~~l~~~~~~~~~~~~~~i~~~k~t~~~~~P~~l~~l~~~~~~  367 (672)
                      .+++++.+|+.|..+... .+.+...++.+++   +++......           +..++++....+|..+..+......
T Consensus       196 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------i~~~~~~~~~~~~~~~~~~~~~~~~  264 (503)
T d3cw9a1         196 HNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQL-----------VQQEQVTSLFATPTHLDALAAAAAH  264 (503)
T ss_dssp             TCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHHHHHHHH
T ss_pred             cccccccCccccccccccccccccccccccccccccChHHhhhh-----------hhhceeecccccccccccccccccc
Confidence            789999999998888776 5556667777666   555555555           8899999999999998887664433


Q ss_pred             hhhhcCchhHHHHHHHHHHHHhhhcCCCcCCCchhhHHHHHHHHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCc
Q 005874          368 KVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAP  447 (672)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~  447 (672)
                      ....                                             ...++||.+++||++++++....+...++..
T Consensus       265 ~~~~---------------------------------------------~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~  299 (503)
T d3cw9a1         265 AGSS---------------------------------------------LKLDSLRHVTFAGATMPDAVLETVHQHLPGE  299 (503)
T ss_dssp             TCTT---------------------------------------------CCCTTCCEEEECSSCCCHHHHHHHHHHCCSE
T ss_pred             cccc---------------------------------------------ccccceEEEEecccccccccccccccccccc
Confidence            2211                                             1235899999999999999999999999999


Q ss_pred             eecccCcccccccccccCCCCCCCCccCCCcCCeEEEEEecCCCCcccCCCCCCccEEEEccC-cccccccCCchhhhhh
Q 005874          448 IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP-NVTVGYFKNEEKTKEV  526 (672)
Q Consensus       448 v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~~~~g~~GEi~v~g~-~v~~gY~~~~~~t~~~  526 (672)
                      +.+.||+||++..+.............+.+.+...+.+.+ ..++..   ..|+.|++++.+. ....||+++++.|.+.
T Consensus       300 ~~~~yg~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~  375 (503)
T d3cw9a1         300 KVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGG-GVDEIV---ANGEEGELIVAASDSAFVGYLNQPQATAEK  375 (503)
T ss_dssp             EEEEEEETTTEEEEEEESCSSSSEEBCCTTCCEEEECTTS-CTTCBC---CTTCCEEEEEECCTTSCCCBTTCHHHHHHH
T ss_pred             ccccccccccceeeeeccccccccccccccccceeeeeec-ccCccc---CCCccccccccccccccccccCChhhhHHH
Confidence            9999999999887776666555555555555555555444 444443   4788898877654 5677899999999998


Q ss_pred             cccCCCCCceEecCcEEEEccCceEEEEecCCCeEecCCceeeccHHHHHHHhcCcccceEEEEecCCC---CeEEEEEE
Q 005874          527 YKVDDKGMRWFYTGDVGQVHADGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMMHADPFH---SYCVALVV  603 (672)
Q Consensus       527 ~~~~~~~~gw~~TGDlg~~~~dG~l~i~gR~~d~ik~~~G~~v~p~~iE~~l~~~~~V~~~~V~g~~~~---~~~va~v~  603 (672)
                      |     .+|||+|||+|++++||.|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+
T Consensus       376 ~-----~~g~~~TgD~g~~~~dG~l~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~  449 (503)
T d3cw9a1         376 L-----QDGWYRTSDVAVWTPEGTVRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVV  449 (503)
T ss_dssp             E-----ETTEEEEEEEEEECTTSCEEEEEESSCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             h-----cCCceecccccccccCCeEEeCCCcCCeEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEE
Confidence            8     6799999999999999999999999999998 6999999999999999999999999997654   36999999


Q ss_pred             cChhHHHHHHHHcChhhh-hcCCCCCcceeEEEEeecCCCCCCCccccccccChHHHHHHH
Q 005874          604 ASQPAVEEWAAKQGIVGK-NARLDKFEIPAKIKLLSYPWTSEAGLVTAALKIKREAIRKAF  663 (672)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~-~~~L~~~~~p~~i~~~~~~~~~~~~~~t~~gKi~R~~l~~~~  663 (672)
                      ++.+...+.....  ..+ +++|+.|++|+.|+++++.|      +|++|||+|++|++++
T Consensus       450 ~~~~~~~~~~~l~--~~~~~~~l~~~~~P~~i~~v~~~P------~t~~GKi~R~~L~~~~  502 (503)
T d3cw9a1         450 PRLGETLSADALD--TFCRSSELADFKRPKRYFILDQLP------KNALNKVLRRQLVQQV  502 (503)
T ss_dssp             ECTTCCCCHHHHH--HHHHHSSSCGGGSCSEEEECSCCC------BCTTSCBCHHHHHHHH
T ss_pred             eCCCCCCCHHHHH--HHHHhcCCCCCCCccEEEEECCCC------cCCCcCccHHHHHHhc
Confidence            8765322211111  333 57899999999999999987      9999999999999875