Citrus Sinensis ID: 005914

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670

MGMNEQAVDDTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAGTHLNICRIYTRGLAYPEFVKKVIAMMMILLILIMSYTITGLTFQVLLA

ccccHHcHHHHHccccccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcc

cccccccEccccccccccccccccEEEEcccccccHHHHHHHHHHEEEEEEcEHHHHHHHHHHHHHHHHHHHHcccccHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEcEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

mgmneqavddtcignpepdkgylhevtlssgidmqekqidctMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIhgnndealefsangqlsningkskmknADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINflkgnndsntkkvGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSkaesktesVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQysgksssatmynagdtddkellinptnnlagatvktSEDAVSLMKSVQAGTHLNICRiytrglayPEFVKKVIAMMMILLILIMSYTITGLTFQVLLA

mgmneqavddtcignpepdKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEivnvhhkissckHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLestknsevltmkEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINflkgnndsntkkVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSkaesktesveeqcivlsednfelknkqsfMRDKIKILESslnraniekaasakevnhRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQysgksssaTMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAGTHLNICRIYTRGLAYPEFVKKVIAMMMILLILIMSYTITGLTFQVLLA

MGMNEQAVDDTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKlvnlhvllmyllARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAGTHLNICRIYTRGLAYPEFVKKVIAmmmillilimSYTITGLTFQVLLA

*********************YLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKM**************************KFQRVLSYFIHGNND**********************************************************LKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGS*************FI**********************************************************************************************************************************************LYSAIWDMETLIE*******************CIVLS*******************************************LMMEMVMQLATQRELIQKQVYSLTSENKLLVEKL**********************LI*****LAGATV*****AVSLMKSVQAGTHLNICRIYTRGLAYPEFVKKVIAMMMILLILIMSYTITGLTFQVLL*

*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************VIAMMMILLILIMSYTITGLTFQVLLA

*********DTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHD*****************QSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL****************LTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQL**************SMLYSAIWDMETLIEDLK**************EQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAGTHLNICRIYTRGLAYPEFVKKVIAMMMILLILIMSYTITGLTFQVLLA

*****QAVDDTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAGTHLNICRIYTRGLAYPEFVKKVIAMMMILLILIMSYTITGLTFQVLLA

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi

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MGMNEQAVDDTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIxxxxxxxxxxxxxxxxxxxxxVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSExxxxxxxxxxxxxxxxxxxxxxxxxxxxFQTSQEQLNEMDNFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxINFLKGNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQSMLYSAxxxxxxxxxxxxxxxxxxxxxxxxxxxxCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAGTHLNICRIYTRGLAYPEFVKKVIAMMMILLILIMSYTITGLTFQVLLA

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		670	2.2.26 [Sep-21-2011]
A8MQR0		627	WPP domain-interacting ta	yes	no	0.791	0.845	0.535	1e-143
Q8L7E5		703	WPP domain-interacting ta	no	no	0.953	0.908	0.362	3e-97

>sp\|A8MQR0\|WIT2_ARATH WPP domain-interacting tail-anchored protein 2 OS=Arabidopsis thaliana GN=WIT2 PE=1 SV=1	Back alignment and function desciption

 Score =  510 bits (1314), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 300/560 (53%), Positives = 404/560 (72%), Gaps = 30/560 (5%)

Query: 43  MTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLF 102
           + +LT++++D AY+SEKL+NLHVLLM+LLA  +DLE   M   D +  S EKAL +DLL 
Sbjct: 24  LRMLTKLEIDSAYTSEKLMNLHVLLMHLLAWDNDLEG--MGTLDSSPASFEKALTFDLLC 81

Query: 103 GILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQE 162
           GIL+SE++EV+ +LD +  +IV+  +KISSCKH   +      +E KL +   SLK+S+ 
Sbjct: 82  GILESEVKEVDEVLDVLEAQIVDTSYKISSCKHGNYIV-----IEGKLGESAESLKQSRG 136

Query: 163 HVSELKMQSAKFQRVLSYFIHGN--NDEALEFSANGQLSNINGKSKMKNAD-QQRHILRM 219
            VSE+ +Q A+ +R L Y  +G   N+E++E         +  K  +K +D + ++ LRM
Sbjct: 137 QVSEITLQLAQLRRTLHYIRNGTSENEESVE---------LRQKYALKPSDLRHKNALRM 187

Query: 220 LEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVL 279
           LEKSL+REL+LEKK+ E  QNEEQLKLKLH+TE+V+ RMEEA+E +WGRFLEA+NS+EVL
Sbjct: 188 LEKSLSRELELEKKLMEFQQNEEQLKLKLHYTEEVSSRMEEASEFIWGRFLEADNSSEVL 247

Query: 280 MGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKN------ 333
            GISKE++GR QI+QF+LNGS QRESELKSKL D   QL+AKD+++QKLE T +      
Sbjct: 248 TGISKELVGRLQILQFSLNGSAQRESELKSKLEDCTVQLEAKDLLVQKLEGTISENSEIV 307

Query: 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAE 393
           SEVLT++E VKS E++LK +++ L++ NA  Q     L EM+N  ES+KE+L+ AESRAE
Sbjct: 308 SEVLTLREYVKSAEQKLKNTDLELKSVNASKQEILVHLAEMENANESVKENLFEAESRAE 367

Query: 394 SAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQE 453
           S E K+ +L   NLEL+EE+NFLK  +D  TKKV  LE Q+R+LE+Q+Q +KVSSEA+QE
Sbjct: 368 SGEAKIKELDAANLELTEELNFLKDADDKKTKKVNSLEKQVRELEVQVQNSKVSSEANQE 427

Query: 454 QQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKI 513
           QQ+MLYSAIWDMETLIEDLKSK SKAES+TE+VEEQCIVLS  N EL    SF+R K K 
Sbjct: 428 QQNMLYSAIWDMETLIEDLKSKASKAESRTETVEEQCIVLSTTNSELNKDVSFLRQKAKS 487

Query: 514 LESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573
           LE+ L+ AN EK   A+E+  R K++M+M++QL+++RE IQ+Q+YSL  ENK+L      
Sbjct: 488 LEAMLDLANNEKERYAQEITTRNKVLMDMMLQLSSERERIQEQLYSLAKENKIL-----R 542

Query: 574 SGKSSSATMYNAGDTDDKEL 593
             + S+    N     DKEL
Sbjct: 543 VNQCSNTYQRNGSYAGDKEL 562

Together with WIT1, required for the nuclear envelope docking of RANGAP proteins in root tips.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q8L7E5\|WIT1_ARATH WPP domain-interacting tail-anchored protein 1 OS=Arabidopsis thaliana GN=WIT1 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		670
255547013		601	conserved hypothetical protein [Ricinus	0.885	0.986	0.599	0.0
297738216		735	unnamed protein product [Vitis vinifera]	0.880	0.802	0.579	0.0
147817708		745	hypothetical protein VITISV_040555 [Viti	0.888	0.798	0.550	1e-177
359473487		629	PREDICTED: WPP domain-interacting tail-a	0.795	0.847	0.589	1e-172
224111830		502	predicted protein [Populus trichocarpa]	0.738	0.986	0.625	1e-163
449463561		589	PREDICTED: WPP domain-interacting tail-a	0.832	0.947	0.547	1e-158
356502676		607	PREDICTED: WPP domain-interacting tail-a	0.816	0.901	0.531	1e-154
356498101		607	PREDICTED: WPP domain-interacting tail-a	0.852	0.940	0.515	1e-148
30697764		627	WPP domain-interacting tail-anchored pro	0.791	0.845	0.535	1e-142
145327191		582	WPP domain-interacting tail-anchored pro	0.791	0.910	0.535	1e-142

>gi\|255547013\|ref\|XP_002514564.1\| conserved hypothetical protein [Ricinus communis] gi\|223546168\|gb\|EEF47670.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/612 (59%), Positives = 456/612 (74%), Gaps = 19/612 (3%)

Query: 3   MNEQAVDDTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVN 62
           M+  ++   C  N E  KGY+ +  LS G   Q+  I+ TM VLTR DLDL +SSEKLVN
Sbjct: 1   MDGYSIAQACTINAESGKGYVDDGNLSGGRGTQD--IESTMEVLTRADLDLGFSSEKLVN 58

Query: 63  LHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVE 122
           LH LLM+LLA  ++LE +  E S ++ATS+E+AL +DLL GILDSELR VE   D I  E
Sbjct: 59  LHGLLMHLLAWDNNLEVMA-EYSYISATSVERALEFDLLSGILDSELRVVENFTDNIQAE 117

Query: 123 IVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI 182
           IV+  HKISSC+H  ++  I+EK   KL D E SLK++QE   E KMQ+ K QR  S F 
Sbjct: 118 IVDARHKISSCRHSAKLVAIIEK---KLRDSEESLKKTQERFIEAKMQTVKLQRFFSAFK 174

Query: 183 HGN--NDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQN 240
             N  +D + E SANGQL NI   SK   A+Q+RHILRMLEK LARELDLEK +SEL +N
Sbjct: 175 LENWKDDNSTELSANGQLPNIKTNSKRHTAEQKRHILRMLEKCLARELDLEKNLSELRRN 234

Query: 241 EEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGS 300
           EEQLKLKLH+TEQVA  MEEAAEVVWGRFLEAEN+AEVLMGISKEM GR QI QFNLNGS
Sbjct: 235 EEQLKLKLHYTEQVALHMEEAAEVVWGRFLEAENAAEVLMGISKEMAGRLQIFQFNLNGS 294

Query: 301 LQRESELKSKLGDFIEQLKAKDMVLQKLES------TKNSEVLTMKEKVKSLEEQLKESE 354
            QRE+ELKS+L   +EQL AKD  L+KLE        K+S+V ++ EKV SLEEQLK SE
Sbjct: 295 FQREAELKSQLHSCLEQLDAKDAALKKLEGKIGEHIAKSSQVPSLMEKVNSLEEQLKRSE 354

Query: 355 IRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414
           +RL++AN   + SQEQ++EM + +E +KES+Y AESRAE+AE KVTQLTDTN ELS+EI+
Sbjct: 355 LRLKHANDFIEESQEQVSEMVSIVEKMKESIYEAESRAETAEAKVTQLTDTNSELSDEIS 414

Query: 415 FLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKS 474
           FLK + +SNTKKV +LE Q+R+LEIQ+Q +K SSEASQEQQ+MLY+AIWDMETLIEDLKS
Sbjct: 415 FLKSSAESNTKKVSLLEKQVRELEIQVQHSKASSEASQEQQNMLYAAIWDMETLIEDLKS 474

Query: 475 KVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNH 534
           KVSKAESKTE+VE+QCI+LSE N EL  + +F+R K++ LE+SL+RAN  KA SAKE+N 
Sbjct: 475 KVSKAESKTETVEDQCILLSETNMELDKELNFLRSKVEGLEASLDRANNSKATSAKEINL 534

Query: 535 RTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELL 594
            T L+ + VMQL+ +R+ IQ Q++SL  ENKLLVEKL    + +S T +  GD D+K++L
Sbjct: 535 TTTLIKDTVMQLSRERDYIQNQLFSLMKENKLLVEKL----RDASITGFKHGDNDNKKVL 590

Query: 595 INPTNNLAGATV 606
            +  N L+  T 
Sbjct: 591 FSE-NGLSNQTC 601

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297738216\|emb\|CBI27417.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147817708\|emb\|CAN75587.1\| hypothetical protein VITISV_040555 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359473487\|ref\|XP_002267767.2\| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224111830\|ref\|XP_002315993.1\| predicted protein [Populus trichocarpa] gi\|222865033\|gb\|EEF02164.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449463561\|ref\|XP_004149502.1\| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Cucumis sativus] gi\|449481214\|ref\|XP_004156116.1\| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356502676\|ref\|XP_003520143.1\| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|356498101\|ref\|XP_003517892.1\| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|30697764\|ref\|NP_177057.2\| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] gi\|205830832\|sp\|A8MQR0.1\|WIT2_ARATH RecName: Full=WPP domain-interacting tail-anchored protein 2 gi\|332196737\|gb\|AEE34858.1\| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi|145327191|ref|NP_001077797.1| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] gi|334183748|ref|NP_001185353.1| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] gi|332196738|gb|AEE34859.1| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] gi|332196739|gb|AEE34860.1| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		670
TAIR\|locus:2205470		627	WIT2 "AT1G68910" [Arabidopsis	0.794	0.848	0.517	1.8e-133
TAIR\|locus:2148057		703	WIT1 "AT5G11390" [Arabidopsis	0.819	0.780	0.330	7.1e-61
DICTYBASE\|DDB_G0290503		1492	DDB_G0290503 [Dictyostelium di	0.762	0.342	0.198	2.7e-18
UNIPROTKB\|F1N8D3		848	Gga.11048 "Uncharacterized pro	0.698	0.551	0.223	1e-15
UNIPROTKB\|O15083		957	ERC2 "ERC protein 2" [Homo sap	0.720	0.504	0.219	9.1e-15
UNIPROTKB\|F1NZF5		1940	Gga.27138 "Uncharacterized pro	0.665	0.229	0.246	1.1e-14
MGI\|MGI:1098749		957	Erc2 "ELKS/RAB6-interacting/CA	0.720	0.504	0.217	1.2e-14
SGD\|S000004300		911	IMH1 "Protein involved in vesi	0.719	0.529	0.207	1.4e-14
UNIPROTKB\|P02565		1940	MYH3 "Myosin-3" [Gallus gallus	0.665	0.229	0.246	1.8e-14
DICTYBASE\|DDB_G0286985		1024	zipA "zipper-like domain-conta	0.694	0.454	0.214	2.1e-14

TAIR\|locus:2205470 WIT2 "AT1G68910" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1308 (465.5 bits), Expect = 1.8e-133, P = 1.8e-133
 Identities = 289/558 (51%), Positives = 393/558 (70%)

Query:    43 MTVLTRVDLDLAYSSEKXXXXXXXXXXXXARGDDLETLVMENSDVAATSIEKALVYDLLF 102
             + +LT++++D AY+SEK            A  +DLE   M   D +  S EKAL +DLL 
Sbjct:    24 LRMLTKLEIDSAYTSEKLMNLHVLLMHLLAWDNDLEG--MGTLDSSPASFEKALTFDLLC 81

Query:   103 GILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQE 162
             GIL+SE++EV+ +LD +  +IV+  +KISSCKH   +      +E KL +   SLK+S+ 
Sbjct:    82 GILESEVKEVDEVLDVLEAQIVDTSYKISSCKHGNYIV-----IEGKLGESAESLKQSRG 136

Query:   163 HVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNAD-QQRHILRMLE 221
              VSE+ +Q A+ +R L Y  +G ++       N +   +  K  +K +D + ++ LRMLE
Sbjct:   137 QVSEITLQLAQLRRTLHYIRNGTSE-------NEESVELRQKYALKPSDLRHKNALRMLE 189

Query:   222 KSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMG 281
             KSL+REL+LEKK+ E  QNEEQLKLKLH+TE+V+ RMEEA+E +WGRFLEA+NS+EVL G
Sbjct:   190 KSLSRELELEKKLMEFQQNEEQLKLKLHYTEEVSSRMEEASEFIWGRFLEADNSSEVLTG 249

Query:   282 ISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST--KNSE---- 335
             ISKE++GR QI+QF+LNGS QRESELKSKL D   QL+AKD+++QKLE T  +NSE    
Sbjct:   250 ISKELVGRLQILQFSLNGSAQRESELKSKLEDCTVQLEAKDLLVQKLEGTISENSEIVSE 309

Query:   336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESA 395
             VLT++E VKS E++LK +++ L++ NA  Q     L EM+N  ES+KE+L+ AESRAES 
Sbjct:   310 VLTLREYVKSAEQKLKNTDLELKSVNASKQEILVHLAEMENANESVKENLFEAESRAESG 369

Query:   396 EEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQ 455
             E K+ +L   NLEL+EE+NFLK  +D  TKKV  LE Q+R+LE+Q+Q +KVSSEA+QEQQ
Sbjct:   370 EAKIKELDAANLELTEELNFLKDADDKKTKKVNSLEKQVRELEVQVQNSKVSSEANQEQQ 429

Query:   456 SMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILE 515
             +MLYSAIWDMETLIEDLKSK SKAES+TE+VEEQCIVLS  N EL    SF+R K K LE
Sbjct:   430 NMLYSAIWDMETLIEDLKSKASKAESRTETVEEQCIVLSTTNSELNKDVSFLRQKAKSLE 489

Query:   516 SSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575
             + L+ AN EK   A+E+  R K++M+M++QL+++RE IQ+Q+YSL  ENK+L  ++    
Sbjct:   490 AMLDLANNEKERYAQEITTRNKVLMDMMLQLSSERERIQEQLYSLAKENKIL--RVN--- 544

Query:   576 KSSSATMYNAGDTDDKEL 593
             + S+    N     DKEL
Sbjct:   545 QCSNTYQRNGSYAGDKEL 562

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR\|locus:2148057 WIT1 "AT5G11390" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N8D3 Gga.11048 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|O15083 ERC2 "ERC protein 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NZF5 Gga.27138 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:1098749 Erc2 "ELKS/RAB6-interacting/CAST family member 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

SGD\|S000004300 IMH1 "Protein involved in vesicular transport" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

UNIPROTKB\|P02565 MYH3 "Myosin-3" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0286985 zipA "zipper-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A8MQR0	WIT2_ARATH	No assigned EC number	0.5357	0.7910	0.8452	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00021167001	SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (659 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		670
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-11
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-09
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-08
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-08
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-08
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-07
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-07
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-05
PLN02939		977	PLN02939, PLN02939, transferase, transferring glyc	2e-05
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	3e-05
COG5185		622	COG5185, HEC1, Protein involved in chromosome segr	3e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-05
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-04
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-04
pfam07888		546	pfam07888, CALCOCO1, Calcium binding and coiled-co	8e-04
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	0.002
pfam07888		546	pfam07888, CALCOCO1, Calcium binding and coiled-co	0.002
pfam00261		237	pfam00261, Tropomyosin, Tropomyosin	0.002
TIGR04211		198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.002
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.004
pfam05557		722	pfam05557, MAD, Mitotic checkpoint protein	0.004

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

 Score = 65.1 bits (159), Expect = 8e-11
 Identities = 72/359 (20%), Positives = 165/359 (45%), Gaps = 32/359 (8%)

Query: 223  SLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGI 282
            SLA++ +L++   EL + E QL+      + +   +              E+  E L   
Sbjct: 662  SLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSL-----------EDLLEELRRQ 710

Query: 283  SKEMLGRFQIVQFNLNGSLQRESELKSKLGDF---IEQLKAKDMVLQKLESTKNSEVLTM 339
             +E+  + + ++  L    +   +L+S+L +    +E+L+ +   LQ+       E+ ++
Sbjct: 711  LEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESL 770

Query: 340  KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKV 399
            +E +  L+E+++E E + Q      +  +E+L E +  +++L+  L   E R E  E+++
Sbjct: 771  EEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEI 830

Query: 400  TQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLY 459
             +L +   EL E+++ L+   +   K++  L+ +L +LE + ++ +   +  +E++  L 
Sbjct: 831  EELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELE 890

Query: 460  SAIWDMETLIEDLKSKVSKAESKTESVEEQC----IVLSEDNFELKNKQSFM-----RDK 510
              + ++E+ + +LK ++ K   + E +E +     + L E   EL+ +           +
Sbjct: 891  EELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELERE 950

Query: 511  IKILESSL------NRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSE 563
            I+ LE  +      N   IE+    +EV  R + +      L   +E + + +  L  E
Sbjct: 951  IERLEEEIEALGPVNLRAIEE---YEEVEERYEELKSQREDLEEAKEKLLEVIEELDKE 1006

Length = 1163

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like	Back alignment and domain information

>gnl\|CDD\|189476 pfam00261, Tropomyosin, Tropomyosin	Back alignment and domain information

>gnl\|CDD\|234501 TIGR04211, SH3_and_anchor, SH3 domain protein	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|218636 pfam05557, MAD, Mitotic checkpoint protein	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		670
KOG1003		205	consensus Actin filament-coating protein tropomyos	100.0
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	99.96
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	99.22
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	99.19
PRK02224		880	chromosome segregation protein; Provisional	99.08
PRK02224		880	chromosome segregation protein; Provisional	99.07
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	98.84
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	98.84
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	98.82
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	98.8
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	98.71
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	98.67
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	98.46
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	98.41
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	98.4
PRK03918		880	chromosome segregation protein; Provisional	98.35
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	98.33
KOG0971		1243	consensus Microtubule-associated protein dynactin	98.24
PRK04863		1486	mukB cell division protein MukB; Provisional	98.15
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	98.14
PHA02562		562	46 endonuclease subunit; Provisional	98.08
PRK03918		880	chromosome segregation protein; Provisional	98.05
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	97.99
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	97.97
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	97.94
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	97.94
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.9
KOG1003		205	consensus Actin filament-coating protein tropomyos	97.86
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	97.85
PRK01156		895	chromosome segregation protein; Provisional	97.66
KOG0933		1174	consensus Structural maintenance of chromosome pro	97.63
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	97.61
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	97.59
KOG0996		1293	consensus Structural maintenance of chromosome pro	97.55
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	97.49
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	97.48
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	97.47
PRK11637		428	AmiB activator; Provisional	97.35
PRK04863		1486	mukB cell division protein MukB; Provisional	97.29
KOG0971		1243	consensus Microtubule-associated protein dynactin	97.28
KOG0933		1174	consensus Structural maintenance of chromosome pro	97.2
PRK01156		895	chromosome segregation protein; Provisional	97.18
PF00038		312	Filament: Intermediate filament protein; InterPro:	97.18
KOG0996		1293	consensus Structural maintenance of chromosome pro	97.12
PRK04778		569	septation ring formation regulator EzrA; Provision	97.08
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	97.05
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	96.94
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	96.93
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	96.92
PHA02562		562	46 endonuclease subunit; Provisional	96.78
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.7
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	96.53
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	96.53
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	96.46
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.44
KOG0963		629	consensus Transcription factor/CCAAT displacement	96.36
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	96.3
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	96.16
KOG0978		698	consensus E3 ubiquitin ligase involved in syntaxin	96.15
PF06160		560	EzrA: Septation ring formation regulator, EzrA ; I	96.09
PF06008		264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	95.9
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	95.86
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	95.8
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	95.55
KOG0018		1141	consensus Structural maintenance of chromosome pro	95.22
PF12777		344	MT: Microtubule-binding stalk of dynein motor; Int	95.21
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	95.11
PF00038		312	Filament: Intermediate filament protein; InterPro:	95.03
PRK04778		569	septation ring formation regulator EzrA; Provision	95.02
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	94.98
PF14915		305	CCDC144C: CCDC144C protein coiled-coil region	94.8
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	94.8
PF05483		786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	94.6
PF10473		140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	94.43
TIGR03185		650	DNA_S_dndD DNA sulfur modification protein DndD. T	94.37
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	94.33
PF05010		207	TACC: Transforming acidic coiled-coil-containing p	94.3
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	94.29
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	94.15
PRK11281		1113	hypothetical protein; Provisional	94.13
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	94.13
PF14662		193	CCDC155: Coiled-coil region of CCDC155	94.1
PRK09039		343	hypothetical protein; Validated	93.95
PF10168		717	Nup88: Nuclear pore component; InterPro: IPR019321	93.91
TIGR03007		498	pepcterm_ChnLen polysaccharide chain length determ	93.9
TIGR01843		423	type_I_hlyD type I secretion membrane fusion prote	93.76
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	93.73
PF14915		305	CCDC144C: CCDC144C protein coiled-coil region	93.67
PF05911		769	DUF869: Plant protein of unknown function (DUF869)	93.6
PLN02939		977	transferase, transferring glycosyl groups	93.48
PRK09039		343	hypothetical protein; Validated	93.42
COG0419		908	SbcC ATPase involved in DNA repair [DNA replicatio	93.29
KOG0978		698	consensus E3 ubiquitin ligase involved in syntaxin	93.05
COG5185		622	HEC1 Protein involved in chromosome segregation, i	92.92
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	92.88
KOG0963		629	consensus Transcription factor/CCAAT displacement	92.76
TIGR01005		754	eps_transp_fam exopolysaccharide transport protein	92.48
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	92.39
PF04012		221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	92.28
PF06008		264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	92.18
TIGR00634		563	recN DNA repair protein RecN. All proteins in this	91.98
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	91.94
PF14662		193	CCDC155: Coiled-coil region of CCDC155	91.91
TIGR03007		498	pepcterm_ChnLen polysaccharide chain length determ	91.84
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	91.75
KOG0018		1141	consensus Structural maintenance of chromosome pro	91.5
KOG4593		716	consensus Mitotic checkpoint protein MAD1 [Cell cy	91.33
PF14073		178	Cep57_CLD: Centrosome localisation domain of Cep57	91.33
TIGR03185		650	DNA_S_dndD DNA sulfur modification protein DndD. T	91.24
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	90.97
KOG0239		670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	90.93
PRK10929		1109	putative mechanosensitive channel protein; Provisi	90.61
KOG0980		980	consensus Actin-binding protein SLA2/Huntingtin-in	90.1
TIGR01005		754	eps_transp_fam exopolysaccharide transport protein	90.07
PF10473		140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	89.98
TIGR02680		1353	conserved hypothetical protein TIGR02680. Members	89.65
TIGR02977		219	phageshock_pspA phage shock protein A. Members of	89.41
PF00769		246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	89.01
PF13851		201	GAS: Growth-arrest specific micro-tubule binding	88.46
KOG0982		502	consensus Centrosomal protein Nuf [Cell cycle cont	88.07
PF15397		258	DUF4618: Domain of unknown function (DUF4618)	88.02
PLN03188		1320	kinesin-12 family protein; Provisional	87.99
PLN02939		977	transferase, transferring glycosyl groups	87.89
PRK10869		553	recombination and repair protein; Provisional	87.78
KOG0249		916	consensus LAR-interacting protein and related prot	87.72
PRK10698		222	phage shock protein PspA; Provisional	87.51
KOG0979		1072	consensus Structural maintenance of chromosome pro	87.48
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	87.3
PF11559		151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	87.23
COG0419		908	SbcC ATPase involved in DNA repair [DNA replicatio	86.87
PF15619		194	Lebercilin: Ciliary protein causing Leber congenit	86.81
KOG4673		961	consensus Transcription factor TMF, TATA element m	86.43
TIGR01843		423	type_I_hlyD type I secretion membrane fusion prote	85.6
PF09787		511	Golgin_A5: Golgin subfamily A member 5; InterPro:	85.55
smart00787		312	Spc7 Spc7 kinetochore protein. This domain is foun	85.35
TIGR00634		563	recN DNA repair protein RecN. All proteins in this	85.1
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	84.44
TIGR01000		457	bacteriocin_acc bacteriocin secretion accessory pr	84.18
PF06160		560	EzrA: Septation ring formation regulator, EzrA ; I	84.11
COG3883		265	Uncharacterized protein conserved in bacteria [Fun	83.79
KOG0249		916	consensus LAR-interacting protein and related prot	83.32
PF05911		769	DUF869: Plant protein of unknown function (DUF869)	83.23
PRK10884		206	SH3 domain-containing protein; Provisional	82.93
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	82.85
PRK10884		206	SH3 domain-containing protein; Provisional	82.83
PF05335		188	DUF745: Protein of unknown function (DUF745); Inte	82.73
TIGR03017		444	EpsF chain length determinant protein EpsF. Sequen	82.48
PF10481		307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	81.79
COG4942		420	Membrane-bound metallopeptidase [Cell division and	81.65
PF04156		191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	81.61
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	81.51
TIGR01010		362	BexC_CtrB_KpsE polysaccharide export inner-membran	81.39

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]	Back alignment and domain information

Probab=100.00  E-value=4.3e-34  Score=278.68  Aligned_cols=187  Identities=18%  Similarity=0.269  Sum_probs=184.2

Q ss_pred             hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhh
Q 005914          367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV  446 (670)
Q Consensus       367 sE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~a  446 (670)
                      ++++|++++|+|++|++++++|++|+.+|.+|+.+++++|+|.+|++|+|++|+.++++||+.+|.||++++       +
T Consensus         2 ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk-------~   74 (205)
T KOG1003|consen    2 AEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAK-------H   74 (205)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------H
Confidence            467899999999999999999999999999999999999999999999999999999999999999999988       9


Q ss_pred             hhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHH
Q 005914          447 SSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKA  526 (670)
Q Consensus       447 saEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke  526 (670)
                      +|+++++    ||++|+|+++|||   ++|+++|.|||.+|++|.       +|+++++++++++++|+++.++++++.+
T Consensus        75 iaE~adr----K~eEVarkL~iiE---~dLE~~eeraE~~Es~~~-------eLeEe~~~~~~nlk~l~~~ee~~~q~~d  140 (205)
T KOG1003|consen   75 IAEKADR----KYEEVARKLVIIE---GELERAEERAEAAESQSE-------ELEEDLRILDSNLKSLSAKEEKLEQKEE  140 (205)
T ss_pred             HHHHHHH----HHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHH-------HHHHHHHHhHhHHHHHHHHHHHHhhhHH
Confidence            9999999    9999999999999   999999999999999999       9999999999999999999999999999


Q ss_pred             hh----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005914          527 AS----------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS  574 (670)
Q Consensus       527 ~t----------lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T  574 (670)
                      .|          +|++++|++|++|.|++|+++||+|++.+...+.+|+.+...||+|
T Consensus       141 ~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~  198 (205)
T KOG1003|consen  141 KYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDET  198 (205)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            99          9999999999999999999999999999999999999999999987

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site	Back alignment and domain information

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells	Back alignment and domain information

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PF14915 CCDC144C: CCDC144C protein coiled-coil region	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex	Back alignment and domain information

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]	Back alignment and domain information

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>PRK11281 hypothetical protein; Provisional	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>PF14662 CCDC155: Coiled-coil region of CCDC155	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs	Back alignment and domain information

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily	Back alignment and domain information

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>PF14915 CCDC144C: CCDC144C protein coiled-coil region	Back alignment and domain information

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants	Back alignment and domain information

>PLN02939 transferase, transferring glycosyl groups	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]	Back alignment and domain information

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family	Back alignment and domain information

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription	Back alignment and domain information

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells	Back alignment and domain information

>TIGR00634 recN DNA repair protein RecN	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>PF14662 CCDC155: Coiled-coil region of CCDC155	Back alignment and domain information

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57	Back alignment and domain information

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD	Back alignment and domain information

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	Back alignment and domain information

>PRK10929 putative mechanosensitive channel protein; Provisional	Back alignment and domain information

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]	Back alignment and domain information

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family	Back alignment and domain information

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]	Back alignment and domain information

>TIGR02680 conserved hypothetical protein TIGR02680	Back alignment and domain information

>TIGR02977 phageshock_pspA phage shock protein A	Back alignment and domain information

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []	Back alignment and domain information

>PF13851 GAS: Growth-arrest specific micro-tubule binding	Back alignment and domain information

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>PF15397 DUF4618: Domain of unknown function (DUF4618)	Back alignment and domain information

>PLN03188 kinesin-12 family protein; Provisional	Back alignment and domain information

>PLN02939 transferase, transferring glycosyl groups	Back alignment and domain information

>PRK10869 recombination and repair protein; Provisional	Back alignment and domain information

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]	Back alignment and domain information

>PRK10698 phage shock protein PspA; Provisional	Back alignment and domain information

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch	Back alignment and domain information

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease	Back alignment and domain information

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]	Back alignment and domain information

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family	Back alignment and domain information

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure	Back alignment and domain information

>smart00787 Spc7 Spc7 kinetochore protein	Back alignment and domain information

>TIGR00634 recN DNA repair protein RecN	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein	Back alignment and domain information

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site	Back alignment and domain information

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]	Back alignment and domain information

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants	Back alignment and domain information

>PRK10884 SH3 domain-containing protein; Provisional	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK10884 SH3 domain-containing protein; Provisional	Back alignment and domain information

>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function	Back alignment and domain information

>TIGR03017 EpsF chain length determinant protein EpsF	Back alignment and domain information

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		670
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-15
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-14
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-08
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-04
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	9e-05
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-04
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-04
2efr_A		155	General control protein GCN4 and tropomyosin 1 Al;	5e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

 Score = 80.3 bits (198), Expect = 1e-15
 Identities = 55/307 (17%), Positives = 125/307 (40%), Gaps = 10/307 (3%)

Query: 284  KEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKV 343
             E L R +  Q      L+   +  ++L +    L+ K     +L +      + +  K 
Sbjct: 863  DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK 922

Query: 344  KSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 403
            + LEE L E E R++      Q  Q +  +M   +  L+E L   E+  +  + +     
Sbjct: 923  QELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTAD 982

Query: 404  DTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIW 463
                ++ ++I  ++  N+  TK+  +LE ++ DL   L + +  ++   + ++   S I 
Sbjct: 983  GKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMIS 1042

Query: 464  DMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANI 523
            ++E  ++  +    + E     +E +   L E   EL+ + + ++ ++   E  L  A  
Sbjct: 1043 ELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA 1102

Query: 524  EKAASAKEVNHRTKLMMEMVMQLA----------TQRELIQKQVYSLTSENKLLVEKLQY 573
                   + N+  K + E+   ++            R   +KQ   L+ E + L  +L+ 
Sbjct: 1103 RLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELED 1162

Query: 574  SGKSSSA 580
            +  +++ 
Sbjct: 1163 TLDTTAT 1169

PyMOL of 1i84

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284	Back alignment and structure

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284	Back alignment and structure

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284	Back alignment and structure

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Length = 155	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		670
2b9c_A		147	Striated-muscle alpha tropomyosin; alpha-helix, co	99.91
2efr_A		155	General control protein GCN4 and tropomyosin 1 Al;	99.86
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.88
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.7
2z5i_A		52	TM, general control protein GCN4 and tropomyosin a	98.57
2efr_A		155	General control protein GCN4 and tropomyosin 1 Al;	98.44
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	98.42
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	98.33
3u1c_A		101	Tropomyosin alpha-1 chain; anti-parallel coiled co	98.27
1ic2_A		81	Tropomyosin alpha chain, skeletal muscle; alpha-he	98.13
3u59_A		101	Tropomyosin beta chain; muscle contraction, actin,	98.05
2b9c_A		147	Striated-muscle alpha tropomyosin; alpha-helix, co	97.63
3u1c_A		101	Tropomyosin alpha-1 chain; anti-parallel coiled co	97.49
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.42
3u59_A		101	Tropomyosin beta chain; muscle contraction, actin,	97.05
3mud_A		175	DNA repair protein XRCC4, tropomyosin alpha-1 CHA;	96.75
3na7_A		256	HP0958; flagellar biogenesis, flagellum export, C4	96.67
1ic2_A		81	Tropomyosin alpha chain, skeletal muscle; alpha-he	96.17
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.98
3na7_A		256	HP0958; flagellar biogenesis, flagellum export, C4	95.82
2v71_A		189	Nuclear distribution protein NUDE-like 1; developm	95.62
3o0z_A		168	RHO-associated protein kinase 1; coiled-coil, tran	95.17
3o0z_A		168	RHO-associated protein kinase 1; coiled-coil, tran	94.54
2v71_A		189	Nuclear distribution protein NUDE-like 1; developm	93.5
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.13
2fxo_A		129	Myosin heavy chain, cardiac muscle beta isoform; c	92.5
2fxo_A		129	Myosin heavy chain, cardiac muscle beta isoform; c	92.34
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	91.97
3mtu_E		77	Head morphogenesis protein, tropomyosin alpha-1 C;	90.88
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	90.06
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	88.86
3bas_A		89	Myosin heavy chain, striated muscle/general contro	83.26

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1	Back alignment and structure

Probab=99.91  E-value=3.3e-25  Score=207.62  Aligned_cols=138  Identities=22%  Similarity=0.321  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHH
Q 005914          374 MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQE  453 (670)
Q Consensus       374 LerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~e  453 (670)
                      |+|+|++|++++.+|++|+.+|..||..++++++|++|.+++|++|+..+++|++.||.||++++       .+|+++++
T Consensus         1 l~Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak-------~~aeeadr   73 (147)
T 2b9c_A            1 MNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAK-------HIAEDADR   73 (147)
T ss_dssp             ----------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999988       99999999


Q ss_pred             HHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHH
Q 005914          454 QQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEV  532 (670)
Q Consensus       454 qQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKea  532 (670)
                          +|++++|+++|++   ++|.||+.|++.+|+||.       +|+++|+.++++|||||++..+|+++++.|-..|
T Consensus        74 ----KyeE~~RKl~~~E---~dLeraeeRae~aE~k~~-------eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I  138 (147)
T 2b9c_A           74 ----KYEEVARKLVIIE---SDLERAEERAELSEGKCA-------ELEEELKTVTNNLKSLEDKVEELLSKNYHLENEV  138 (147)
T ss_dssp             ----HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Confidence                9999999999999   999999999999999999       9999999999999999999999999999996554

PyMOL of 2b9c

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A	Back alignment and structure

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A	Back alignment and structure

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A	Back alignment and structure

>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C	Back alignment and structure

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A	Back alignment and structure

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A	Back alignment and structure

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1	Back alignment and structure

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}	Back alignment and structure

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1	Back alignment and structure

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}	Back alignment and structure

>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*	Back alignment and structure

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}	Back alignment and structure

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}	Back alignment and structure

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}	Back alignment and structure

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}	Back alignment and structure

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}	Back alignment and structure

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A	Back alignment and structure

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00