Citrus Sinensis ID: 005954

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------
MLAGCSSSTLLSPRHRLRSEASAQFPACHFQLPSMGTQRLDLPCSFSRKDSSRSQPIRPVGLSVEKPIEPKTSACSLKQNVRLPPLATSTQREIKDEFWEKGKSLKRFAEGGLVDESCINRAKRKKGSSGDNDGKNDDIHEGGGDSLSLGQLGTGNFWFQPSFTGQNVPQVPFTLTCSGEKDRVCYVPGEFISPPLPLSNNPWVESVITEITDLGEKDGDETSHRLAKEVSASSTSSESGSLALRLHENPVEHDVGNGSRNPYPHQGGVEASEEGTNQGENGFELVRLLTDCVEAIGSRNIPAVNHFIAKLGDVASPRGSPISRLTAYYTEALALRVSRLWPHTFHITPPRDFDRVDDDSGAALRLLNQATPIPKFIHFTANEMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIRSTNPTIVLMAEQEAEHNSPFLETRVSNSLRYYSALFDLIDYSLPLDSPVRIKIEEMFAREVRSIVACEGSDRLERHESFENWRRMMEQGGFRCMGISEREMLQSQMLLKMYSCGNYGVKKQGQDGAALTLSWIDQPLYTVSAWAPVDVAGGSSSFSQPS
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccHHHHHccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHccccccccEEEECccccHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccccccEEEEEccccccccccccccccHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHEEEccccccccccccHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHccccccEEEEEcccccEEEEECcccEEEEEECccccccccccccccccc
**************************ACHFQLPSMGTQRLDLP*********************************LKQNVRL***************W*************************************************LGQLGTGNFWFQPSFTGQNVPQVPFTLTCSGEKDRVCYVPGEFISPPLPLSNNPWVESVITEIT*********************************************************************GFELVRLLTDCVEAIGSRNIPAVNHFIAKLGDVASPRGSPISRLTAYYTEALALRVSRLWPHTFHITPPRDFDRVDDDSGAALRLLNQATPIPKFIHFTANEMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIRSTNPTIVLMAEQEAEHNSPFLETRVSNSLRYYSALFDLIDYSLPLDSPVRIKIEEMFAREVRSIVACEGSDRLERHESFENWRRMMEQGGFRCMGISEREMLQSQMLLKMYSCGNYGVKKQGQDGAALTLSWIDQPLYTVSAWAPV*************
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MLAGCSSSTLLSPRHRLRSEASAQFPACHFQLPSMGTQRLDLPCSFSRKDSSRSQPIRPVGLSVEKPIEPKTSACSLKQNVRLPPLATSTQREIKDEFWEKGKSLKRFAEGGLVDESCINRAKRKKGSSGDNDGKNDDIHEGGGDSLSLGQLGTGNFWFQPSFTGQNVPQVPFTLTCSGEKDRVCYVPGEFISPPLPLSNNPWVESVITEITDLGEKDGDETSHRLAKEVSASSTSSESGSLALRLHENPVEHDVGNGSRNPYPHQGGVEASEEGTNQGENGFELVRLLTDCVEAIGSRNIPAVNHFIAKLGDVASPRGSPISRLTAYYTEALALRVSRLWPHTFHITPPRDFDRVDDDSGAALRLLNQATPIPKFIHFTANEMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIRSTNPTIVLMAEQEAEHNSPFLETRVSNSLRYYSALFDLIDYSLPLDSPVRIKIEEMFAREVRSIVACEGSDRLERHESFENWRRMMEQGGFRCMGISEREMLQSQMLLKMYSCGNYGVKKQGQDGAALTLSWIDQPLYTVSAWAPVDVAGGSSSFSQPS

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Scarecrow-like protein 28 Probable transcription factor involved in plant development.probableQ9CAN3

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 4A6D, chain A
Confidence level:confident
Coverage over the Query: 382-529,541-547,564-604
View the alignment between query and template
View the model in PyMOL
Template: 3DTN, chain A
Confidence level:probable
Coverage over the Query: 383-552,566-604
View the alignment between query and template
View the model in PyMOL
Template: 2QE6, chain A
Confidence level:probable
Coverage over the Query: 366-522
View the alignment between query and template
View the model in PyMOL