Citrus Sinensis ID: 005954

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------
MLAGCSSSTLLSPRHRLRSEASAQFPACHFQLPSMGTQRLDLPCSFSRKDSSRSQPIRPVGLSVEKPIEPKTSACSLKQNVRLPPLATSTQREIKDEFWEKGKSLKRFAEGGLVDESCINRAKRKKGSSGDNDGKNDDIHEGGGDSLSLGQLGTGNFWFQPSFTGQNVPQVPFTLTCSGEKDRVCYVPGEFISPPLPLSNNPWVESVITEITDLGEKDGDETSHRLAKEVSASSTSSESGSLALRLHENPVEHDVGNGSRNPYPHQGGVEASEEGTNQGENGFELVRLLTDCVEAIGSRNIPAVNHFIAKLGDVASPRGSPISRLTAYYTEALALRVSRLWPHTFHITPPRDFDRVDDDSGAALRLLNQATPIPKFIHFTANEMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIRSTNPTIVLMAEQEAEHNSPFLETRVSNSLRYYSALFDLIDYSLPLDSPVRIKIEEMFAREVRSIVACEGSDRLERHESFENWRRMMEQGGFRCMGISEREMLQSQMLLKMYSCGNYGVKKQGQDGAALTLSWIDQPLYTVSAWAPVDVAGGSSSFSQPS
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccHHHHHcccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHccccccccEEEEEccccHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccccccEEEEEccccccccccccccccHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHEEEccccccccccccHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHccccccEEEEEcccccEEEEEEcccEEEEEEEccccccccccccccccc
ccccccccccccccccccccccHHHcHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcHHHHHHHcccHHHHHcccccccccHHHccccccccccccccccccccccccHHHHHHcccccccccccccccccccccEEEEccccccccEcccccEccccccccccccHHHHHHccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHcccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEcHHHHcHccccHHHcccccccEEEEEHHHHHHHccccccccHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccEEEEEEccccEEEccccccEEEEEEcccccHcccccccccccc
mlagcssstllsprhrlrseasaqfpachfqlpsmgtqrldlpcsfsrkdssrsqpirpvglsvekpiepktsacslkqnvrlpplatstQREIKDEFWEKGKSLKrfaegglvdescinrakrkkgssgdndgknddihegggdslslgqlgtgnfwfqpsftgqnvpqvpftltcsgekdrvcyvpgefispplplsnnpwveSVITEITdlgekdgdetSHRLAKEvsasstssesgsLALRlhenpvehdvgngsrnpyphqggveaseegtnqgeNGFELVRLLTDCVEAigsrnipavNHFIAKlgdvasprgspisrLTAYYTEALALRVsrlwphtfhitpprdfdrvdddSGAALRLLnqatpipkfiHFTANEMLLRafdgkdrvhiidfdikqglqwpsffqslasrpnppshvritgigeskqeLNETGDRLSGFAealnlpfefhpvvdRLEDVRLWMLHVKEKESVAVNCIFQLHKTlysgnggvlRDFLglirstnpTIVLMAEQeaehnspfletRVSNSLRYYSALFDLidyslpldspvrIKIEEMFAREVRSIVAcegsdrlerhESFENWRRMMEQGGFRCMGISEREMLQSQMLLKMyscgnygvkkqgqdgaaltlswidqplytvsawapvdvaggsssfsqps
mlagcssstllsprhRLRSEASAQFPACHFQLPSMGTQRLDLPCSFsrkdssrsqpirpvglsvekpiepktsacslkqnvrlpplatstqreIKDEFWEKGKSlkrfaegglvdescinrakrkkgssgdndgkndDIHEGGGDSLSLGQLGTGNFWFQPSFTGQNVPQVPFTLTCSGEKDRVCYVPGEFispplplsnnpWVESVITEITDLGEKDGDETSHRLAKevsasstssesgsLALRLHENPVEHDVGNGSRNPYPHQGGVEASEEGTNQGENGFELVRLLTDCVEAIGSRNIPAVNHFIAKLgdvasprgspISRLTAYYTEALALRVSrlwphtfhitpprdfdrvDDDSGAALRLLnqatpipkFIHFTANEMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIRSTNPTIVLMAEQEAEHNSPFLETRVSNSLRYYSALFDLIDYSLPLDSPVRIKIEEMFAREVRsivacegsdrlerhesfeNWRRMMEQGGFRCMGISEREMLQSQMLLKMYSCGNYGVKKQGQDGAALTLSWIDQPLYTVSAWAPVDVAGGSSSFSQPS
MLAGCSSSTLLSPRHRLRSEASAQFPACHFQLPSMGTQRLDLPCSFSRKDSSRSQPIRPVGLSVEKPIEPKTSACSLKQNVRLPPLATSTQREIKDEFWEKGKSLKRFAEGGLVDESCINRAKRkkgssgdndgknddIHEgggdslslgqlgtgNFWFQPSFTGQNVPQVPFTLTCSGEKDRVCYVPGEFISPPLPLSNNPWVESVITEITDLGEKDGDETSHRLAKEVsasstssesgsLALRLHENPVEHDVGNGSRNPYPHQGGVEASEEGTNQGENGFELVRLLTDCVEAIGSRNIPAVNHFIAKLGDVASPRGSPISRLTAYYTEALALRVSRLWPHTFHITPPRDFDRVDDDSGAALRLLNQATPIPKFIHFTANEMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIRSTNPTIVLMAEQEAEHNSPFLETRVSNSLRYYSALFDLIDYSLPLDSPVRIKIEEMFAREVRSIVACEGSDRLERHESFENWRRMMEQGGFRCMGISEREMLQSQMLLKMYSCGNYGVKKQGQDGAALTLSWIDQPLYTVSAWAPVDVAGGSSSFSQPS
**************************************************************************************************W*************************************************LGQLGTGNFWFQPSFTGQNVPQVPFTLTCSGEKDRVCYVPGEFISPPLPLSNNPWVESVITEIT*********************************************************************GFELVRLLTDCVEAIGSRNIPAVNHFIAKLGDVASPRGSPISRLTAYYTEALALRVSRLWPHTFHITPPRDFDRVDDDSGAALRLLNQATPIPKFIHFTANEMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQS*****************************LSGFAEALNLPFEFHPVVDRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIRSTNPTIVLMAEQE***NSPFLETRVSNSLRYYSALFDLIDYSLPLDSPVRIKIEEMFAREVRSIVACEGSDRLERHESFENWRRMMEQGGFRCMGISEREMLQSQMLLKMYSCGNYGVKKQGQDGAALTLSWIDQPLYTVSAWAPVDV***********
**************************ACHFQLPSMGTQRLDLP*********************************LKQNVRL**********************************************************************************************************************************************************************************************************VRLLTDCVEAIGSRNIPAVNHFIAKLGDVASPRGSPISRLTAYYTEALALRVSRLWPH**************DDSGAALRLLNQATPIPKFIHFTANEMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIRSTNPTIVLMAEQEAEHNSPFLETRVSNSLRYYSALFDLIDYSLPLDSPVRIKIEEMFAREVRSIVACEGSDRLERHESFENWRRMMEQGGFRCMGISEREMLQSQMLLKMYSCGNYGVKKQGQDGAALTLSWIDQPLYTVSAWAP**************
***********SPRHRLRSEASAQFPACHFQLPSMGTQRLDLPCS***********IRPVGLSVEKPIEPKTSACSLKQNVRLPPLATSTQREIKDEFWEKGKSLKRFAEGGLVDESCINRA**********DGKNDDIHEGGGDSLSLGQLGTGNFWFQPSFTGQNVPQVPFTLTCSGEKDRVCYVPGEFISPPLPLSNNPWVESVITEITDLGEKD***********************LALRLHENPVEHDVGNGSRNPYPHQGGVEASEEGTNQGENGFELVRLLTDCVEAIGSRNIPAVNHFIAKLGDVASPRGSPISRLTAYYTEALALRVSRLWPHTFHITPPRDFDRVDDDSGAALRLLNQATPIPKFIHFTANEMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIRSTNPTIVLMAEQEAEHNSPFLETRVSNSLRYYSALFDLIDYSLPLDSPVRIKIEEMFAREVRSIVACEGSDRLERHESFENWRRMMEQGGFRCMGISEREMLQSQMLLKMYSCGNYGVKKQGQDGAALTLSWIDQPLYTVSAWAPVDVA**********
**************************************************************************C****NV*LPPLATSTQREIKDEFWEKGKSLKRF*E********************************GGDSLSLGQLGTGNFWFQPSFTGQNVPQVPFTLTCSGEKDRVCYVPGEFISPPLPLSNNPWVESVITEIT********************************************************************NGFELVRLLTDCVEAIGSRNIPAVNHFIAKLGDVASPRGSPISRLTAYYTEALALRVSRLWPHTFHITPPRDFDRVDDDSGAALRLLNQATPIPKFIHFTANEMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIRSTNPTIVLMAEQEAEHNSPFLETRVSNSLRYYSALFDLIDYSLPLDSPVRIKIEEMFAREVRSIVACEGSDRLERHESFENWRRMMEQGGFRCMGISEREMLQSQMLLKMYSCGNYGVKKQGQDGAALTLSWIDQPLYTVSAWAPV*************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLAGCSSSTLLSPRHRLRSEASAQFPACHFQLPSMGTQRLDLPCSFSRKDSSRSQPIRPVGLSVEKPIEPKTSACSLKQNVRLPPLATSTQREIKDEFWEKGKSLKRFAEGGLVDESCINRAKRKKGSSGDNDGKNDDIHEGGGDSLSLGQLGTGNFWFQPSFTGQNVPQVPFTLTCSGEKDRVCYVPGEFISPPLPLSNNPWVESVITEITDLGEKDGDETSHRLAKEVSASSTSSESGSLALRLHENPVEHDVGNGSRNPYPHQGGVEASEEGTNQGENGFELVRLLTDCVEAIGSRNIPAVNHFIAKLGDVASPRGSPISRLTAYYTEALALRVSRLWPHTFHITPPRDFDRVDDDSGAALRLLNQATPIPKFIHFTANEMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIRSTNPTIVLMAEQEAEHNSPFLETRVSNSLRYYSALFDLIDYSLPLDSPVRIKIEEMFAREVRSIVACEGSDRLERHESFENWRRMMEQGGFRCMGISEREMLQSQMLLKMYSCGNYGVKKQGQDGAALTLSWIDQPLYTVSAWAPVDVAGGSSSFSQPS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query667 2.2.26 [Sep-21-2011]
Q9CAN3658 Scarecrow-like protein 28 yes no 0.925 0.937 0.586 0.0
Q8S4W7590 DELLA protein GAI1 OS=Vit no no 0.535 0.605 0.354 4e-63
Q9LQT8533 DELLA protein GAI OS=Arab no no 0.535 0.669 0.371 1e-62
Q5BN22579 DELLA protein RGA2 OS=Bra N/A no 0.535 0.616 0.363 3e-62
Q5BN23573 DELLA protein RGA1 OS=Bra N/A no 0.535 0.623 0.360 4e-62
Q9SLH3587 DELLA protein RGA OS=Arab no no 0.535 0.608 0.363 9e-62
Q2RB59651 Protein SCARECROW 1 OS=Or no no 0.554 0.568 0.376 9e-61
Q9C8Y3511 DELLA protein RGL1 OS=Ara no no 0.535 0.698 0.358 1e-60
Q2Z2E9783 Protein SCARECROW OS=Ipom N/A no 0.562 0.478 0.360 2e-60
Q7Y1B6588 DELLA protein GAI OS=Sola N/A no 0.536 0.608 0.335 3e-60
>sp|Q9CAN3|SCL28_ARATH Scarecrow-like protein 28 OS=Arabidopsis thaliana GN=SCL28 PE=2 SV=1 Back     alignment and function desciption
 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/689 (58%), Positives = 483/689 (70%), Gaps = 72/689 (10%)

Query: 1   MLAGCSSSTLLSPRHRLRSEASAQFPACHFQLPSMGTQRLDLPCS--FSRKDSSRSQPI- 57
           MLAGCSSS+LLSP  RLRSEA A   A       M TQRLDLPCS  FSRK++  S+P+ 
Sbjct: 1   MLAGCSSSSLLSPTRRLRSEAVAATSATVSAHFPMNTQRLDLPCSSSFSRKETPSSRPLG 60

Query: 58  RPVGL-----SVEKPIE--PKTSACSLKQNVRLPPLATSTQR----EIKDEFWEKGKSLK 106
           R + L     +  KPIE   KTS CSLKQN++LPPLAT+          ++   +GKSLK
Sbjct: 61  RSISLDNSNNNNNKPIERKTKTSGCSLKQNIKLPPLATTRGNGEGFSWNNDNNNRGKSLK 120

Query: 107 RFAEGGLVDESCINRAKRKKGSSGDNDGKNDDIHEGGGDSLSLGQLGTGNFWFQPSFTGQ 166
           R AE    DESC++RAKR K  +           EGG             FWF+  FTGQ
Sbjct: 121 RLAEE---DESCLSRAKRTKCEN-----------EGG-------------FWFE-HFTGQ 152

Query: 167 NV--PQVPFTLTCSGE-KDRVCYVPGEFISPPLPLSNNPWVESVITEITDLGEKDGDETS 223
           +   P +PF+LTCSG+ +++VC+VP E IS PLP     WV+SVITE+  +G+KD + + 
Sbjct: 153 DSSSPALPFSLTCSGDDEEKVCFVPSEVISQPLP----NWVDSVITELAGIGDKDVESSL 208

Query: 224 HRLAKEVSASSTSSESGSLALRLHENPVEHDVGNGSRNPYPHQGGVEASEEGTNQG---- 279
               KE S  S++S S       H  P   +  NGSRNPY H+G  E    G        
Sbjct: 209 PAAVKEASGGSSTSASSESRSLSHRVP---EPTNGSRNPYSHRGATEERTTGNINNNNNR 265

Query: 280 ---ENGFELVRLLTDCVEAIGSRNIPAVNHFIAKLGDVASPRG-SPISRLTAYYTEALAL 335
              +  FELV LLT C++AI SRNI A+NHFIA+ GD+ASPRG +P++RL AYY EALAL
Sbjct: 266 NDLQRDFELVNLLTGCLDAIRSRNIAAINHFIARTGDLASPRGRTPMTRLIAYYIEALAL 325

Query: 336 RVSRLWPHTFHITPPRDFDR-VDDDSGAALRLLNQATPIPKFIHFTANEMLLRAFDGKDR 394
           RV+R+WPH FHI PPR+FDR V+D+SG ALR LNQ TPIPKFIHFTANEMLLRAF+GK+R
Sbjct: 326 RVARMWPHIFHIAPPREFDRTVEDESGNALRFLNQVTPIPKFIHFTANEMLLRAFEGKER 385

Query: 395 VHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLP 454
           VHIIDFDIKQGLQWPSFFQSLASR NPP HVRITGIGESK ELNETGDRL GFAEA+NL 
Sbjct: 386 VHIIDFDIKQGLQWPSFFQSLASRINPPHHVRITGIGESKLELNETGDRLHGFAEAMNLQ 445

Query: 455 FEFHPVVDRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIRSTNPTI 514
           FEFHPVVDRLEDVRLWMLHVKE ESVAVNC+ Q+HKTLY G G  +RDFLGLIRSTNP  
Sbjct: 446 FEFHPVVDRLEDVRLWMLHVKEGESVAVNCVMQMHKTLYDGTGAAIRDFLGLIRSTNPIA 505

Query: 515 VLMAEQEAEHNSPFLETRVSNSLRYYSALFDLIDYSLPLDSPVRIKIEEM-FAREVRSIV 573
           +++AEQEAEHNS  LETRV NSL+YYSA+FD I  +L  DS +R+K+EEM F RE+R+IV
Sbjct: 506 LVLAEQEAEHNSEQLETRVCNSLKYYSAMFDAIHTNLATDSLMRVKVEEMLFGREIRNIV 565

Query: 574 ACEGSDRLERHESFENWRRMMEQGGFRCMGISEREMLQSQMLLKMYSCGNYG---VKKQG 630
           ACEGS R ERH  F +WRRM+EQ GFR +G+SERE+LQS+MLL+MY   N G   V++  
Sbjct: 566 ACEGSHRQERHVGFRHWRRMLEQLGFRSLGVSEREVLQSKMLLRMYGSDNEGFFNVERSD 625

Query: 631 QDG-------AALTLSWIDQPLYTVSAWA 652
           +D          +TL W +QPLYT+SAW 
Sbjct: 626 EDNGGEGGRGGGVTLRWSEQPLYTISAWT 654
Probable transcription factor involved in plant development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8S4W7|GAI1_VITVI DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LQT8|GAI_ARATH DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1 Back     alignment and function description
>sp|Q5BN22|RGA2_BRACM DELLA protein RGA2 OS=Brassica campestris GN=RGA2 PE=3 SV=1 Back     alignment and function description
>sp|Q5BN23|RGA1_BRACM DELLA protein RGA1 OS=Brassica campestris GN=RGA1 PE=1 SV=1 Back     alignment and function description
>sp|Q9SLH3|RGA_ARATH DELLA protein RGA OS=Arabidopsis thaliana GN=RGA PE=1 SV=1 Back     alignment and function description
>sp|Q2RB59|SCR1_ORYSJ Protein SCARECROW 1 OS=Oryza sativa subsp. japonica GN=SCR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9C8Y3|RGL1_ARATH DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1 Back     alignment and function description
>sp|Q2Z2E9|SCR_IPONI Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1 Back     alignment and function description
>sp|Q7Y1B6|GAI_SOLLC DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query667
225426858676 PREDICTED: scarecrow-like protein 28 [Vi 0.976 0.963 0.778 0.0
224058599666 GRAS family transcription factor [Populu 0.977 0.978 0.775 0.0
224071735665 GRAS family transcription factor [Populu 0.986 0.989 0.761 0.0
255537295662 DELLA protein RGL1, putative [Ricinus co 0.970 0.977 0.762 0.0
383866663503 GRAS family protein, partial [Dimocarpus 0.745 0.988 0.873 0.0
356514060664 PREDICTED: scarecrow-like protein 28-lik 0.953 0.957 0.620 0.0
356563218669 PREDICTED: scarecrow-like protein 28-lik 0.950 0.947 0.616 0.0
15221688658 scarecrow-like protein 28 [Arabidopsis t 0.925 0.937 0.586 0.0
297837101691 scarecrow transcription factor family pr 0.929 0.897 0.583 0.0
449461098648 PREDICTED: LOW QUALITY PROTEIN: scarecro 0.925 0.952 0.598 0.0
>gi|225426858|ref|XP_002276880.1| PREDICTED: scarecrow-like protein 28 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1049 bits (2712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/674 (77%), Positives = 580/674 (86%), Gaps = 23/674 (3%)

Query: 1   MLAGCSSSTLLSPRHRLRSEASAQFPACHFQLPSMGTQRLDLPCSFSRKDSSRSQPIRPV 60
           MLAGCS  TLLSPRHRLRSE SAQF ACHFQLPSM TQRLDLPCSF RKD+SRSQPIRPV
Sbjct: 1   MLAGCS--TLLSPRHRLRSETSAQFQACHFQLPSMSTQRLDLPCSFPRKDASRSQPIRPV 58

Query: 61  GLSVEKPIEPKTSACSLKQNVRLPPLATSTQ-------REIKDEFWEKGKSLKRFAEGGL 113
           GLSVEK +E KTS CSLKQN+RLPP ATS Q       REIKDEFWEKGKSLKRFAE G 
Sbjct: 59  GLSVEKSMEAKTSTCSLKQNIRLPPSATSAQTTFIEGRREIKDEFWEKGKSLKRFAEQGS 118

Query: 114 VDESCINRAKRKKGSSGDNDGKNDDIHEGGGDSLSLGQLGTGNFWFQPSF--------TG 165
           VDESC++RAKRK+ S  D  GK+++  EGGG SLSLGQLG+GNFWFQPSF         G
Sbjct: 119 VDESCMSRAKRKRRS--DTYGKSEESLEGGGQSLSLGQLGSGNFWFQPSFGVPRSVPGVG 176

Query: 166 QNVPQVPFTLTCSGEKDRVCYVPGEFISPPLPLSNNPWVESVITEITDLGEKDGDETSHR 225
            N PQV F LTCSGE++RVC+VP E ISPPLPLSNNPW+ESV+TEIT LG+ D  ETSH 
Sbjct: 177 NN-PQVSFPLTCSGEEERVCFVPSEVISPPLPLSNNPWLESVVTEITSLGDNDL-ETSHG 234

Query: 226 LAKEVSASSTSSESGSLALRLHENPVEHDVGNGSRNPYPHQGGVEASEEGTNQGEN-GFE 284
           + KE S SS SSES  LALRLHE+ VE ++GNGS  P+ H+G   + ++  NQGE+ GFE
Sbjct: 235 VVKEASGSSNSSESHPLALRLHESTVEQEIGNGSSLPHLHEGPKMSGDDENNQGEHQGFE 294

Query: 285 LVRLLTDCVEAIGSRNIPAVNHFIAKLGDVASPRGSPISRLTAYYTEALALRVSRLWPHT 344
           L+ LL  CVEAIGSRNI A++HFIAKLGD+ASP+GSPISR+TAY+TEALALRVSRLWP  
Sbjct: 295 LISLLMACVEAIGSRNIAAISHFIAKLGDLASPKGSPISRVTAYFTEALALRVSRLWPAI 354

Query: 345 FHITPPRDFDRVDDDSGAALRLLNQATPIPKFIHFTANEMLLRAFDGKDRVHIIDFDIKQ 404
           FH+T PR+ DR DDD+  ALRLLNQ +PIPKFIHFT+NE+LLRAF+GKDRVHIIDFDIKQ
Sbjct: 355 FHVTTPRELDRADDDTWTALRLLNQVSPIPKFIHFTSNEILLRAFEGKDRVHIIDFDIKQ 414

Query: 405 GLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRL 464
           GLQWPS FQSLASR NPPSHVRITG+GESKQELNETGDRL+GFAEALNLPFEFHPVVDRL
Sbjct: 415 GLQWPSLFQSLASRTNPPSHVRITGVGESKQELNETGDRLAGFAEALNLPFEFHPVVDRL 474

Query: 465 EDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIRSTNPTIVLMAEQEAEH 524
           EDVRLWMLHVK+KESVAVNCIFQLHKTLY G+GG LRDFLGLIRSTNP+IVLMAEQEAEH
Sbjct: 475 EDVRLWMLHVKDKESVAVNCIFQLHKTLYDGSGGALRDFLGLIRSTNPSIVLMAEQEAEH 534

Query: 525 NSPFLETRVSNSLRYYSALFDLIDYSLPLDSPVRIKIEEMFAREVRSIVACEGSDRLERH 584
           N   LETRVSNSLRYYSA+FD IDYSLPLDSPVR+K+EEMFARE+R+I+ACEGSDR+ERH
Sbjct: 535 NELSLETRVSNSLRYYSAIFDSIDYSLPLDSPVRMKVEEMFAREIRNIIACEGSDRVERH 594

Query: 585 ESFENWRRMMEQGGFRCMGISEREMLQSQMLLKMYSCGNYGVKKQGQDGAALTLSWIDQP 644
           ESFE WRR MEQGGFRC+GISEREMLQSQMLLKMYSC NY V K+GQD AALTLSW+DQP
Sbjct: 595 ESFEKWRRRMEQGGFRCVGISEREMLQSQMLLKMYSCENYSVSKRGQD-AALTLSWLDQP 653

Query: 645 LYTVSAWAPVDVAG 658
           LYTVSAW  VDVAG
Sbjct: 654 LYTVSAWTQVDVAG 667

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224058599|ref|XP_002299559.1| GRAS family transcription factor [Populus trichocarpa] gi|222846817|gb|EEE84364.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224071735|ref|XP_002303565.1| GRAS family transcription factor [Populus trichocarpa] gi|222840997|gb|EEE78544.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255537295|ref|XP_002509714.1| DELLA protein RGL1, putative [Ricinus communis] gi|223549613|gb|EEF51101.1| DELLA protein RGL1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|383866663|gb|AFH54533.1| GRAS family protein, partial [Dimocarpus longan] Back     alignment and taxonomy information
>gi|356514060|ref|XP_003525725.1| PREDICTED: scarecrow-like protein 28-like [Glycine max] Back     alignment and taxonomy information
>gi|356563218|ref|XP_003549861.1| PREDICTED: scarecrow-like protein 28-like [Glycine max] Back     alignment and taxonomy information
>gi|15221688|ref|NP_176498.1| scarecrow-like protein 28 [Arabidopsis thaliana] gi|75169917|sp|Q9CAN3.1|SCL28_ARATH RecName: Full=Scarecrow-like protein 28; Short=AtSCL28; AltName: Full=GRAS family protein 8; Short=AtGRAS-8 gi|12323248|gb|AAG51600.1|AC010795_4 transcription factor SCARECROW, putative; 52594-50618 [Arabidopsis thaliana] gi|332195932|gb|AEE34053.1| scarecrow-like protein 28 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297837101|ref|XP_002886432.1| scarecrow transcription factor family protein [Arabidopsis lyrata subsp. lyrata] gi|297332273|gb|EFH62691.1| scarecrow transcription factor family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449461098|ref|XP_004148280.1| PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 28-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query667
TAIR|locus:2015243658 AT1G63100 "AT1G63100" [Arabido 0.730 0.740 0.631 1.8e-194
TAIR|locus:2006747533 GAI "GIBBERELLIC ACID INSENSIT 0.535 0.669 0.371 3.1e-60
TAIR|locus:2080345653 SCR "SCARECROW" [Arabidopsis t 0.550 0.562 0.359 1e-59
TAIR|locus:2005516587 RGA1 "REPRESSOR OF GA1-3 1" [A 0.535 0.608 0.360 2.2e-59
TAIR|locus:2201557511 RGL1 "RGA-like 1" [Arabidopsis 0.535 0.698 0.360 4e-58
TAIR|locus:2099624547 RGL2 "RGA-like 2" [Arabidopsis 0.661 0.806 0.317 2.2e-57
TAIR|locus:2020487445 LAS "AT1G55580" [Arabidopsis t 0.421 0.631 0.393 4.8e-56
TAIR|locus:2157477523 RGL3 "RGA-like protein 3" [Ara 0.538 0.686 0.336 4.8e-55
TAIR|locus:2174974584 AT5G66770 "AT5G66770" [Arabido 0.568 0.648 0.320 5.4e-51
TAIR|locus:2165685405 AT5G41920 "AT5G41920" [Arabido 0.577 0.950 0.339 1.1e-50
TAIR|locus:2015243 AT1G63100 "AT1G63100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1626 (577.4 bits), Expect = 1.8e-194, Sum P(2) = 1.8e-194
 Identities = 327/518 (63%), Positives = 387/518 (74%)

Query:   157 FWFQPSFTGQNV--PQVPFTLTCSGE-KDRVCYVPGEFISPPLPLSNNPWVESVITEITD 213
             FWF+  FTGQ+   P +PF+LTCSG+ +++VC+VP E IS PLP   N WV+SVITE+  
Sbjct:   144 FWFE-HFTGQDSSSPALPFSLTCSGDDEEKVCFVPSEVISQPLP---N-WVDSVITELAG 198

Query:   214 LGEKDGDETSHRLAKEVXXXXXXXXXXXLALRLHENPVEHDVGNGSRNPYPHQGGVEASE 273
             +G+KD + +     KE                 H  P   +  NGSRNPY H+G  E   
Sbjct:   199 IGDKDVESSLPAAVKEASGGSSTSASSESRSLSHRVP---EPTNGSRNPYSHRGATEERT 255

Query:   274 EGT-NQGEN------GFELVRLLTDCVEAIGSRNIPAVNHFIAKLGDVASPRG-SPISRL 325
              G  N   N       FELV LLT C++AI SRNI A+NHFIA+ GD+ASPRG +P++RL
Sbjct:   256 TGNINNNNNRNDLQRDFELVNLLTGCLDAIRSRNIAAINHFIARTGDLASPRGRTPMTRL 315

Query:   326 TAYYTEALALRVSRLWPHTFHITPPRDFDR-VDDDSGAALRLLNQATPIPKFIHFTANEM 384
              AYY EALALRV+R+WPH FHI PPR+FDR V+D+SG ALR LNQ TPIPKFIHFTANEM
Sbjct:   316 IAYYIEALALRVARMWPHIFHIAPPREFDRTVEDESGNALRFLNQVTPIPKFIHFTANEM 375

Query:   385 LLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRL 444
             LLRAF+GK+RVHIIDFDIKQGLQWPSFFQSLASR NPP HVRITGIGESK ELNETGDRL
Sbjct:   376 LLRAFEGKERVHIIDFDIKQGLQWPSFFQSLASRINPPHHVRITGIGESKLELNETGDRL 435

Query:   445 SGFAEALNLPFEFHPVVDRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFL 504
              GFAEA+NL FEFHPVVDRLEDVRLWMLHVKE ESVAVNC+ Q+HKTLY G G  +RDFL
Sbjct:   436 HGFAEAMNLQFEFHPVVDRLEDVRLWMLHVKEGESVAVNCVMQMHKTLYDGTGAAIRDFL 495

Query:   505 GLIRSTNPTIVLMAEQEAEHNSPFLETRVSNSLRYYSALFDLIDYSLPLDSPVRIKIEEM 564
             GLIRSTNP  +++AEQEAEHNS  LETRV NSL+YYSA+FD I  +L  DS +R+K+EEM
Sbjct:   496 GLIRSTNPIALVLAEQEAEHNSEQLETRVCNSLKYYSAMFDAIHTNLATDSLMRVKVEEM 555

Query:   565 -FAREVRSIVACEGSDRLERHESFENWRRMMEQGGFRCMGISEREMLQSQMLLKMYSCGN 623
              F RE+R+IVACEGS R ERH  F +WRRM+EQ GFR +G+SERE+LQS+MLL+MY   N
Sbjct:   556 LFGREIRNIVACEGSHRQERHVGFRHWRRMLEQLGFRSLGVSEREVLQSKMLLRMYGSDN 615

Query:   624 YG---VKKQGQD-------GAALTLSWIDQPLYTVSAW 651
              G   V++  +D       G  +TL W +QPLYT+SAW
Sbjct:   616 EGFFNVERSDEDNGGEGGRGGGVTLRWSEQPLYTISAW 653
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0000226 "microtubule cytoskeleton organization" evidence=RCA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0048451 "petal formation" evidence=RCA
GO:0048453 "sepal formation" evidence=RCA
TAIR|locus:2006747 GAI "GIBBERELLIC ACID INSENSITIVE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080345 SCR "SCARECROW" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005516 RGA1 "REPRESSOR OF GA1-3 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201557 RGL1 "RGA-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099624 RGL2 "RGA-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020487 LAS "AT1G55580" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157477 RGL3 "RGA-like protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174974 AT5G66770 "AT5G66770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165685 AT5G41920 "AT5G41920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9CAN3SCL28_ARATHNo assigned EC number0.58630.92500.9376yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query667
pfam03514372 pfam03514, GRAS, GRAS family transcription factor 1e-161
>gnl|CDD|217595 pfam03514, GRAS, GRAS family transcription factor Back     alignment and domain information 
 Score =  467 bits (1204), Expect = e-161
 Identities = 175/374 (46%), Positives = 239/374 (63%), Gaps = 10/374 (2%)

Query: 285 LVRLLTDCVEAIGSRNIPAVNHFIAKLGDVASPRGSPISRLTAYYTEALALRVSRLWPHT 344
           LV LL  C EA+ S ++      +A+L  +ASP G P+ RL AY+TEALA R++R     
Sbjct: 1   LVHLLLACAEAVSSGDLSLAQAILARLNQLASPAGDPMQRLAAYFTEALAARLARSGSSI 60

Query: 345 FHITPPRDFDRVD-DDSGAALRLLNQATPIPKFIHFTANEMLLRAFDGKDRVHIIDFDIK 403
           +   PP      D  +  AA +L  + +P  KF HFTAN+ +L AF+G++RVHIIDFDI 
Sbjct: 61  YSALPPSPSTPSDSVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFEGEERVHIIDFDIG 120

Query: 404 QGLQWPSFFQSLASRPNPPSHVRITGIG----ESKQELNETGDRLSGFAEALNLPFEFHP 459
           QGLQWPS  Q+LASRP  P H+RITGIG     S +EL ETGDRL+ FA++L +PFEF+P
Sbjct: 121 QGLQWPSLIQALASRPGGPPHLRITGIGSPQFSSAEELEETGDRLAQFADSLGVPFEFNP 180

Query: 460 VV-DRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIRSTNPTIVLMA 518
           +V  RLED+ L ML V+  E++AVNC+F LH+ L          FL L++S NP +V + 
Sbjct: 181 LVAKRLEDLDLEMLDVRPGEALAVNCVFALHRLLDESVSLESPTFLRLVKSLNPKVVTLV 240

Query: 519 EQEAEHNSPFLETRVSNSLRYYSALFDLIDYSLPLDSPVRIKIEEM-FAREVRSIVACEG 577
           EQEA HNS     R   +L YYSALFD ++ +LP DS  R K+E     RE+ ++VACEG
Sbjct: 241 EQEANHNSAPFLARFVEALHYYSALFDSLEATLPRDSEERRKVERELLGREIVNVVACEG 300

Query: 578 SDRLERHESFENWRRMMEQGGFRCMGISEREMLQSQMLLKMYSCGNYGVKKQGQDGAALT 637
           ++R+ERHE+F  WR  M + GFR + +SE  + Q+++LL++Y    Y V++   D  +L 
Sbjct: 301 AERVERHETFGKWRERMRRAGFRPVPLSEFAVKQAKLLLRLYYVDGYRVEE---DNGSLV 357

Query: 638 LSWIDQPLYTVSAW 651
           L W  +PL   SAW
Sbjct: 358 LGWKGRPLVAASAW 371

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 667
PF03514374 GRAS: GRAS domain family; InterPro: IPR005202 Sequ 100.0
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 97.08
TIGR00740239 methyltransferase, putative. A simple BLAST search 96.06
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 95.99
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 94.81
PLN02233261 ubiquinone biosynthesis methyltransferase 94.67
PRK06202232 hypothetical protein; Provisional 94.67
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 93.74
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 93.68
PRK08317241 hypothetical protein; Provisional 91.89
PF13649101 Methyltransf_25: Methyltransferase domain; PDB: 3B 91.28
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 91.2
PLN02396322 hexaprenyldihydroxybenzoate methyltransferase 90.87
PRK00216239 ubiE ubiquinone/menaquinone biosynthesis methyltra 90.76
TIGR03438301 probable methyltransferase. This model represents 90.41
PF12847112 Methyltransf_18: Methyltransferase domain; PDB: 3G 90.25
TIGR02072240 BioC biotin biosynthesis protein BioC. This enzyme 90.15
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 90.14
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 89.21
PTZ00098263 phosphoethanolamine N-methyltransferase; Provision 89.08
COG2226238 UbiE Methylase involved in ubiquinone/menaquinone 88.18
PLN02585315 magnesium protoporphyrin IX methyltransferase 86.53
smart00138264 MeTrc Methyltransferase, chemotaxis proteins. Meth 85.52
PRK05785226 hypothetical protein; Provisional 84.56
PLN02336 475 phosphoethanolamine N-methyltransferase 83.39
TIGR03587204 Pse_Me-ase pseudaminic acid biosynthesis-associate 82.86
PRK06922677 hypothetical protein; Provisional 81.95
PRK11036255 putative S-adenosyl-L-methionine-dependent methylt 81.5
PRK11873272 arsM arsenite S-adenosylmethyltransferase; Reviewe 80.97
PLN02336475 phosphoethanolamine N-methyltransferase 80.33
PRK05134233 bifunctional 3-demethylubiquinone-9 3-methyltransf 80.16
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] Back     alignment and domain information 
Probab=100.00  E-value=3.9e-108  Score=878.64  Aligned_cols=365  Identities=47%  Similarity=0.818  Sum_probs=344.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCCCCChhhhHHHHHHHHHHHhhcccCCcccccCCCCCCCc-ccchHHHH
Q 005954          285 LVRLLTDCVEAIGSRNIPAVNHFIAKLGDVASPRGSPISRLTAYYTEALALRVSRLWPHTFHITPPRDFDR-VDDDSGAA  363 (667)
Q Consensus       285 Lv~LLl~CAeAV~~gd~~~A~~lL~~L~~laSp~Gd~~QRLA~YFaeAL~~RL~~~~p~~~~~~~p~~~~~-~~~e~~~A  363 (667)
                      |++||++||+||+.||.+.|+.+|++|++++||+|||+||||+||++||.+||.+++++.|...++..... ...+...|
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a   80 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA   80 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999998887654443321 24578999


Q ss_pred             HHHHHhcCCccchhhhhhhHHHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCC----ChHHHHH
Q 005954          364 LRLLNQATPIPKFIHFTANEMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGE----SKQELNE  439 (667)
Q Consensus       364 ~~~f~e~sPf~kFAhftANqAILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~----s~~~L~e  439 (667)
                      |+.||++|||+||+|||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||||+.    +.+.+++
T Consensus        81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~  160 (374)
T PF03514_consen   81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQE  160 (374)
T ss_pred             HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999    7889999


Q ss_pred             HHHHHHHHHHHcCCceEEEEe-ccccccccccccccCCCcEEEEEeccchhhcccCCCC--ChHHHHHHHHHhcCCcEEE
Q 005954          440 TGDRLSGFAEALNLPFEFHPV-VDRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNG--GVLRDFLGLIRSTNPTIVL  516 (667)
Q Consensus       440 tG~RL~~fA~slgVpFEF~~V-~~~lE~l~~~~L~i~~gEaLAVN~~~~LH~lL~des~--~~l~~fL~~IRsL~PkVVV  516 (667)
                      ||+||.+||+++||||||++| ..+||+++.++|++++||+|||||+++|||++.+...  .+++.||+.||+|+|+|||
T Consensus       161 ~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv  240 (374)
T PF03514_consen  161 TGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVV  240 (374)
T ss_pred             HHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEE
Confidence            999999999999999999996 6799999999999999999999999999998744321  2456799999999999999


Q ss_pred             EeeecCCCCCcchhHHHHHHHHHHHHHHHHhhhhCCCCcHHHHHHHHH-hhhhhhheeeccCCCccccccchhHHHHHHH
Q 005954          517 MAEQEAEHNSPFLETRVSNSLRYYSALFDLIDYSLPLDSPVRIKIEEM-FAREVRSIVACEGSDRLERHESFENWRRMME  595 (667)
Q Consensus       517 lvEqEadhNsp~F~~RF~EAL~yYsAlFDSLea~lp~~s~eR~~iE~~-fgrEI~NIVAcEG~dRvERhE~~~qWr~Rm~  595 (667)
                      ++|+|+|||+|+|++||.|||+||+++|||||+++|+++++|+.+|++ ||+||+|||||||.+|+||||++++|+.||+
T Consensus       241 ~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r~~  320 (374)
T PF03514_consen  241 LVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRRMR  320 (374)
T ss_pred             EEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHHHH
Confidence            999999999999999999999999999999999999999999999997 9999999999999999999999999999999


Q ss_pred             cCCCeeccCChhHHHHHHHHHhccCCCCcEEEEecCCCCeEEEeeCCceeEEEeecc
Q 005954          596 QGGFRCMGISEREMLQSQMLLKMYSCGNYGVKKQGQDGAALTLSWIDQPLYTVSAWA  652 (667)
Q Consensus       596 rAGF~~vpLS~~a~~QAr~LLk~~~~~gy~v~e~g~D~g~LlLgWKgrpL~svSAWr  652 (667)
                      +|||+++|||++++.||++|+++|.++||+|+++   +|||+||||++||+++||||
T Consensus       321 ~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~---~~~l~L~Wk~~pL~~~SaWr  374 (374)
T PF03514_consen  321 RAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEED---GGCLLLGWKGRPLVAASAWR  374 (374)
T ss_pred             hcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEc---CCEEEEEeCCcEEEEEeCcC
Confidence            9999999999999999999999998778999976   79999999999999999997

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>PRK08317 hypothetical protein; Provisional Back     alignment and domain information
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase Back     alignment and domain information
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed Back     alignment and domain information
>TIGR03438 probable methyltransferase Back     alignment and domain information
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A Back     alignment and domain information
>TIGR02072 BioC biotin biosynthesis protein BioC Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Back     alignment and domain information
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PLN02585 magnesium protoporphyrin IX methyltransferase Back     alignment and domain information
>smart00138 MeTrc Methyltransferase, chemotaxis proteins Back     alignment and domain information
>PRK05785 hypothetical protein; Provisional Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase Back     alignment and domain information
>PRK06922 hypothetical protein; Provisional Back     alignment and domain information
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional Back     alignment and domain information
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query667
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 69.9 bits (170), Expect = 2e-12
 Identities = 60/412 (14%), Positives = 111/412 (26%), Gaps = 116/412 (28%)

Query: 284 ELVRLLTDCVEAIGSRNIPAVNHFIAKLGDVASPR----GSPI-------SRLTAYYTEA 332
                L   + +        V  F+    +V         SPI       S +T  Y E 
Sbjct: 62  SGTLRLFWTLLSKQEE---MVQKFV---EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 333 LALRVSRLW--PHTFHITPPRDFDRVDDDSGAALR-LLNQATPIPK-FIH---------F 379
                 RL+     F      +  R+       LR  L +  P     I           
Sbjct: 116 ----RDRLYNDNQVF---AKYNVSRLQPYL--KLRQALLELRPAKNVLIDGVLGSGKTWV 166

Query: 380 TA----NEMLLRAFDGKDRVHIIDF-------DIKQGLQWPSFFQSLASRPNPPSHVRIT 428
                 +  +    D K  +  ++         + + LQ       L  + +P    R  
Sbjct: 167 ALDVCLSYKVQCKMDFK--IFWLNLKNCNSPETVLEMLQ------KLLYQIDPNWTSRSD 218

Query: 429 GIGESKQELNETGDRLSGFAEALNLPFEFHP----VVDRLEDVRLWMLHVKEKESVAVNC 484
                K  ++     L        L  + +     V+  +++ + W        +  ++C
Sbjct: 219 HSSNIKLRIHSIQAELRRL-----LKSKPYENCLLVLLNVQNAKAW-------NAFNLSC 266

Query: 485 IFQLHKTLY-SGNGGVLRDFLGLIRSTNPTIVLMAEQEAEHNSPFLETRVSNSLRYYSAL 543
                K L  +    V  DFL    +T+ ++         H+                  
Sbjct: 267 -----KILLTTRFKQVT-DFLSAATTTHISLD-------HHSMTLTP---DEVKSLLLKY 310

Query: 544 FDLIDYSLPLD----SPVRIKIEEMFAREVRSIVACEGSDRLERHESFENWRRMMEQGGF 599
            D     LP +    +P R+    + A  +R     +G         ++NW+ +      
Sbjct: 311 LDCRPQDLPREVLTTNPRRLS---IIAESIR-----DGLAT------WDNWKHVNCDKLT 356

Query: 600 RCMGISEREMLQSQMLLKMY-SCG--NYGVKKQGQDGAALTLSWIDQPLYTV 648
             +  S   +L+     KM+                   L+L W D     V
Sbjct: 357 TIIESS-LNVLEPAEYRKMFDRLSVFPPSAHIPTI---LLSLIWFDVIKSDV 404
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query667
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 97.18
3dh0_A219 SAM dependent methyltransferase; cystal structure, 96.33
3dtn_A234 Putative methyltransferase MM_2633; structural gen 96.25
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 96.02
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 95.99
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 95.74
1vl5_A260 Unknown conserved protein BH2331; putative methylt 95.73
1xxl_A239 YCGJ protein; structural genomics, protein structu 94.74
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 94.44
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 94.43
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 94.31
3kkz_A267 Uncharacterized protein Q5LES9; putative methyltra 94.26
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 94.14
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 93.98
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 93.78
2r3s_A335 Uncharacterized protein; methyltransferase domain, 93.74
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 93.54
3hnr_A220 Probable methyltransferase BT9727_4108; structural 93.46
3f4k_A257 Putative methyltransferase; structural genomics, P 93.35
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 93.22
2p7i_A250 Hypothetical protein; putative methyltransferase, 93.11
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 92.95
4htf_A285 S-adenosylmethionine-dependent methyltransferase; 92.85
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 92.71
3bus_A273 REBM, methyltransferase; rebeccamycin synthesis; H 92.64
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 92.57
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 92.35
3gu3_A284 Methyltransferase; alpha-beta protein, structural 92.2
4fsd_A383 Arsenic methyltransferase; rossmann fold; 1.75A {C 92.08
3sm3_A235 SAM-dependent methyltransferases; NESG, structural 91.81
3ou2_A218 SAM-dependent methyltransferase; O-methyltransfera 91.71
3dp7_A363 SAM-dependent methyltransferase; structural genomi 91.69
1xtp_A254 LMAJ004091AAA; SGPP, structural genomics, PSI, pro 91.49
4e2x_A416 TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s 91.31
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 90.91
3l8d_A242 Methyltransferase; structural genomics, PSI, nysgr 90.63
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 89.95
3e8s_A227 Putative SAM dependent methyltransferase; NP_74470 89.71
3ccf_A279 Cyclopropane-fatty-acyl-phospholipid synthase; YP_ 89.6
2p35_A259 Trans-aconitate 2-methyltransferase; SAM dependent 89.54
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 89.52
3cc8_A230 Putative methyltransferase; structural genomics, j 89.42
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 89.39
2vdw_A302 Vaccinia virus capping enzyme D1 subunit; nucleoti 88.94
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 88.94
2fk8_A318 Methoxy mycolic acid synthase 4; S-adenosylmethion 88.33
3hem_A302 Cyclopropane-fatty-acyl-phospholipid synthase 2; p 88.31
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 88.25
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 88.05
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 88.01
2g72_A289 Phenylethanolamine N-methyltransferase; HET: SAM F 86.94
3m70_A286 Tellurite resistance protein TEHB homolog; structu 86.84
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 86.61
3dli_A240 Methyltransferase; PSI-II, NYSGXRC, structural gen 85.76
2xvm_A199 Tellurite resistance protein TEHB; antibiotic resi 85.72
3bgv_A313 MRNA CAP guanine-N7 methyltransferase; alternative 84.08
3i9f_A170 Putative type 11 methyltransferase; structural gen 83.94
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 83.72
3thr_A293 Glycine N-methyltransferase; GNMT, folate, methylt 83.69
2yxd_A183 Probable cobalt-precorrin-6Y C(15)-methyltransfer 83.5
1nkv_A256 Hypothetical protein YJHP; structural genomics, PS 82.98
3u81_A221 Catechol O-methyltransferase; neurotransmitter deg 82.44
3p9n_A189 Possible methyltransferase (methylase); RV2966C, a 82.41
1vlm_A219 SAM-dependent methyltransferase; possible histamin 81.79
3ofk_A216 Nodulation protein S; NODS, N-methyltransferase, S 81.43
3g2m_A299 PCZA361.24; SAM-dependent methyltransferase, glyco 81.11
1dus_A194 MJ0882; hypothetical protein, methanococcus jannas 81.09
3mq2_A218 16S rRNA methyltransferase; methyltranferase, ribo 80.81
1ve3_A227 Hypothetical protein PH0226; dimer, riken structur 80.64
3g5t_A299 Trans-aconitate 3-methyltransferase; structural ge 80.05
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
Probab=97.18  E-value=0.015  Score=58.53  Aligned_cols=109  Identities=15%  Similarity=0.232  Sum_probs=66.1

Q ss_pred             eEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEeccccccccccccc
Q 005954          394 RVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLWMLH  473 (667)
Q Consensus       394 ~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~~lE~l~~~~L~  473 (667)
                      .-+|+|+|.|.|.    +...|+.+- +.+..+||||+.+...|+...+++.++.  ...+++|.  ...++++.     
T Consensus        71 ~~~vLDlGcGtG~----~~~~la~~~-~~~~~~v~gvD~s~~ml~~A~~~~~~~~--~~~~v~~~--~~D~~~~~-----  136 (261)
T 4gek_A           71 GTQVYDLGCSLGA----ATLSVRRNI-HHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDVI--EGDIRDIA-----  136 (261)
T ss_dssp             TCEEEEETCTTTH----HHHHHHHTC-CSSSCEEEEEESCHHHHHHHHHHHHTSC--CSSCEEEE--ESCTTTCC-----
T ss_pred             CCEEEEEeCCCCH----HHHHHHHhc-CCCCCEEEEEECCHHHHHHHHHHHHhhc--cCceEEEe--eccccccc-----
Confidence            3479999999984    455566543 2345899999999999988887765432  22345553  22333332     


Q ss_pred             cCCCcEEEEEeccchhhcccCCCCChHHHHHHHH-HhcCCc-EEEEeeecC
Q 005954          474 VKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLI-RSTNPT-IVLMAEQEA  522 (667)
Q Consensus       474 i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~I-RsL~Pk-VVVlvEqEa  522 (667)
                      ...-.+++.  .+.||++..    .....+|+.| |.|+|. ++++.|.-.
T Consensus       137 ~~~~d~v~~--~~~l~~~~~----~~~~~~l~~i~~~LkpGG~lii~e~~~  181 (261)
T 4gek_A          137 IENASMVVL--NFTLQFLEP----SERQALLDKIYQGLNPGGALVLSEKFS  181 (261)
T ss_dssp             CCSEEEEEE--ESCGGGSCH----HHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             cccccccee--eeeeeecCc----hhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence            222234444  456777521    2345677776 569998 455666543
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Back     alignment and structure
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Back     alignment and structure
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Back     alignment and structure
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Back     alignment and structure
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Back     alignment and structure
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Back     alignment and structure
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Back     alignment and structure
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Back     alignment and structure
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Back     alignment and structure
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Back     alignment and structure
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Back     alignment and structure
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Back     alignment and structure
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Back     alignment and structure
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Back     alignment and structure
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query667
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 97.4
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 96.26
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 96.04
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 95.85
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 95.27
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 95.2
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 95.11
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 94.53
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 94.53
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 94.37
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 94.17
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 92.53
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 91.95
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 91.72
d1wzna1251 Hypothetical methyltransferase PH1305 {Archaeon Py 89.76
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 89.02
d1fp2a2244 Isoflavone O-methyltransferase {Alfalfa (Medicago 88.14
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 87.01
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 84.13
d1xvaa_292 Glycine N-methyltransferase {Rat (Rattus norvegicu 80.99
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.40  E-value=0.0043  Score=57.77  Aligned_cols=109  Identities=18%  Similarity=0.205  Sum_probs=67.1

Q ss_pred             CeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEecccccccccccc
Q 005954          393 DRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLWML  472 (667)
Q Consensus       393 ~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~~lE~l~~~~L  472 (667)
                      ..-||+|+|.|.|.    +...|+... ..|..+||||+.+...++.+.+++.    ..+....++.+.....       
T Consensus        39 ~~~~vLDlGCGtG~----~~~~l~~~~-~~~~~~v~giD~S~~ml~~A~~~~~----~~~~~~~~~~~~~d~~-------  102 (225)
T d1im8a_          39 ADSNVYDLGCSRGA----ATLSARRNI-NQPNVKIIGIDNSQPMVERCRQHIA----AYHSEIPVEILCNDIR-------  102 (225)
T ss_dssp             TTCEEEEESCTTCH----HHHHHHHTC-CCSSCEEEEECSCHHHHHHHHHHHH----TSCCSSCEEEECSCTT-------
T ss_pred             CCCEEEEeccchhh----HHHHHHHhh-cCCCCceEEeCCCHHHHHHHHHHhH----hhcccchhhhccchhh-------
Confidence            34589999999885    334444332 2356899999999999988887775    3333333333332222       


Q ss_pred             ccCCCcEEEEEeccchhhcccCCCCChHHHHHHHH-HhcCCcE-EEEeeec
Q 005954          473 HVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLI-RSTNPTI-VLMAEQE  521 (667)
Q Consensus       473 ~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~I-RsL~PkV-VVlvEqE  521 (667)
                      ....++.-+|.|.+.||++-.    .....+|+.| |.|+|.- +++.|.-
T Consensus       103 ~~~~~~~d~i~~~~~l~~~~~----~d~~~~l~~i~~~LkpgG~li~~~~~  149 (225)
T d1im8a_         103 HVEIKNASMVILNFTLQFLPP----EDRIALLTKIYEGLNPNGVLVLSEKF  149 (225)
T ss_dssp             TCCCCSEEEEEEESCGGGSCG----GGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ccccccceeeEEeeeccccCh----hhHHHHHHHHHHhCCCCceeeccccc
Confidence            222334445666677887522    2356788777 6799995 5555543
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure